Citrus Sinensis ID: 025529

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEEccccccccHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHcccEEEEcccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHcccccHHHHHHHHHHHHcccccccccccEEEEEEccccccHHHHHHHHHHHcccEEEEHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHcccEEEEcccccHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHccEEccccccEEEcccEccccccEccccccEcEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
masssaanledvpsVDLMTELLRRMKCASKPDKRLILIIVWLagppgsgkgtqspiikdeyclCHLATGDMLRAAVAAKtplgikakeamdkgelvsdDLVVGIIDEamkkpscqkgfildgfprteVQAQKLDEMLEKQGKKVDKVLNFAIDDAvleeritgrwihpssgrtyhtkfappkvpgvddvtgepliqrkDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIvaqlhaekppqeVTSEVQKALSA
Flexible Loop (DISEMBL)
masssaanledvpsvDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIkakeamdkgelvSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEkqgkkvdkVLNFAIDDavleeritgrwihpssgrtyhtkfappkvpgvddVTGEPLIQRKDDTAAVLKSRLEafhkqtepvIDYYSKKGIVAQLHaekppqevtsEVQKALSA
Low Complexity Region (SEG)
MASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA
Disordered region (IsUnstruct)
****************LMTELLRRMKCASKPDKRLILIIVWLAGPP*****TQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQ***********GKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFA******V**V****LI*****TAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQ********************
Disordered Region (DISOPRED)
************PSVDLMTE**************LILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA
Disordered Region (DISEMBL)
**********DVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE****************
Disordered Region (DISPRO)
*********EDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q08480	243	Adenylate kinase B OS=Ory	yes	no	0.964	0.995	0.898	1e-129
Q08479	241	Adenylate kinase A OS=Ory	no	no	0.956	0.995	0.885	1e-125
O82514	246	Adenylate kinase 1 OS=Ara	yes	no	0.960	0.979	0.796	1e-116
Q9FK35	248	Adenylate kinase 2 OS=Ara	no	no	0.936	0.947	0.789	1e-112
Q54QJ9	276	Adenylate kinase 2, mitoc	yes	no	0.784	0.713	0.609	3e-70
B4KLY1	240	Adenylate kinase 2, mitoc	N/A	no	0.812	0.85	0.583	4e-70
Q74ZL1	277	Adenylate kinase 1 OS=Ash	yes	no	0.840	0.761	0.576	7e-70
Q9U915	240	Adenylate kinase 2, mitoc	yes	no	0.836	0.875	0.571	2e-69
B3MCQ5	240	Adenylate kinase 2, mitoc	N/A	no	0.836	0.875	0.566	5e-69
B4QBH8	240	Adenylate kinase 2, mitoc	N/A	no	0.836	0.875	0.566	6e-69

>sp|Q08480|KAD2_ORYSJ Adenylate kinase B OS=Oryza sativa subsp. japonica GN=ADK-B PE=2 SV=1

 Score =  459 bits (1181), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/247 (89%), Positives = 235/247 (95%), Gaps = 5/247 (2%)

Query: 4   SSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63
           ++AANLEDVPS+DLM ELLRRMKC+SKPDKRLIL+     GPPGSGKGTQSPIIKDEYCL
Sbjct: 2   AAAANLEDVPSMDLMNELLRRMKCSSKPDKRLILV-----GPPGSGKGTQSPIIKDEYCL 56

Query: 64  CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGF 123
           CHLATGDMLRAAVAAKTPLG+KAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGF
Sbjct: 57  CHLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGF 116

Query: 124 PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKV 183
           PRT VQAQKLDEMLEK+G KVDKVLNFAIDD++LEERITGRWIHPSSGR+YHTKFAPPKV
Sbjct: 117 PRTVVQAQKLDEMLEKKGTKVDKVLNFAIDDSILEERITGRWIHPSSGRSYHTKFAPPKV 176

Query: 184 PGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTS 243
           PGVDDVTGEPLIQRKDDTA VLKSRLEAFHKQTEPVIDYYSKK +VA LHAEKPP+EVT+
Sbjct: 177 PGVDDVTGEPLIQRKDDTAEVLKSRLEAFHKQTEPVIDYYSKKALVANLHAEKPPKEVTA 236

Query: 244 EVQKALS 250
           EVQK LS
Sbjct: 237 EVQKVLS 243

This small ubiquitous enzyme is essential for maintenance and cell growth.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 3

>sp|Q08479|KAD1_ORYSJ Adenylate kinase A OS=Oryza sativa subsp. japonica GN=ADK-A PE=2 SV=1

 Score =  448 bits (1152), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/245 (88%), Positives = 231/245 (94%), Gaps = 5/245 (2%)

Query: 6   AANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH 65
           AANLEDVPS++LMTELLRRMKC+SKPDKR+IL+     GPPG GKGTQSP+IKDE+CLCH
Sbjct: 2   AANLEDVPSMELMTELLRRMKCSSKPDKRVILV-----GPPGCGKGTQSPLIKDEFCLCH 56

Query: 66  LATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPR 125
           LATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK SCQKGFILDGFPR
Sbjct: 57  LATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKTSCQKGFILDGFPR 116

Query: 126 TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG 185
           T VQAQKLDEML KQG K+DKVLNFAIDDA+LEERITGRWIHPSSGR+YHTKFAPPK PG
Sbjct: 117 TVVQAQKLDEMLAKQGTKIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPG 176

Query: 186 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 245
           +DDVTGEPLIQRKDDTAAVLKSRLEAFH QT+PVIDYY+KKGIVA LHAEKPP+EVT EV
Sbjct: 177 LDDVTGEPLIQRKDDTAAVLKSRLEAFHVQTKPVIDYYTKKGIVANLHAEKPPKEVTVEV 236

Query: 246 QKALS 250
           QKALS
Sbjct: 237 QKALS 241

This small ubiquitous enzyme is essential for maintenance and cell growth.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|O82514|KAD1_ARATH Adenylate kinase 1 OS=Arabidopsis thaliana GN=ADK1 PE=2 SV=2

 Score =  418 bits (1075), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/246 (79%), Positives = 223/246 (90%), Gaps = 5/246 (2%)

Query: 5   SAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64
           +AA+LEDV +VDLM+ELLRR+KC+ KPDKRLI I     GPPGSGKGTQSP++KDEYCLC
Sbjct: 6   AAADLEDVQTVDLMSELLRRLKCSQKPDKRLIFI-----GPPGSGKGTQSPVVKDEYCLC 60

Query: 65  HLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFP 124
           HL+TGDMLRAAVA+KTPLG+KAKEAM+KGELVSDDLVVGIIDEAM KP CQKGFILDGFP
Sbjct: 61  HLSTGDMLRAAVASKTPLGVKAKEAMEKGELVSDDLVVGIIDEAMNKPKCQKGFILDGFP 120

Query: 125 RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVP 184
           RT  QA+KLDEML+++G ++DKVLNFAIDDA+LEERITGRWIHPSSGR+YHTKFAPPK P
Sbjct: 121 RTVTQAEKLDEMLKRRGTEIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTP 180

Query: 185 GVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSE 244
           GVDD+TGEPLIQRKDD A VLKSRL AFH QT+PVIDYY+KK ++  + AEK PQEVTSE
Sbjct: 181 GVDDITGEPLIQRKDDNADVLKSRLAAFHSQTQPVIDYYAKKAVLTNIQAEKAPQEVTSE 240

Query: 245 VQKALS 250
           V+KALS
Sbjct: 241 VKKALS 246

This small ubiquitous enzyme is essential for maintenance and cell growth.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9FK35|KAD2_ARATH Adenylate kinase 2 OS=Arabidopsis thaliana GN=ADK2 PE=2 SV=1

 Score =  404 bits (1037), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/242 (78%), Positives = 219/242 (90%), Gaps = 7/242 (2%)

Query: 1   MASSSAA--NLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIK 58
           MA+SSAA  ++ED+ +VDLM+ELLRRMKCASKPDKRL+ I     GPPGSGKGTQSP+IK
Sbjct: 1   MATSSAASVDMEDIQTVDLMSELLRRMKCASKPDKRLVFI-----GPPGSGKGTQSPVIK 55

Query: 59  DEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 118
           DE+CLCHL+TGDMLRAAVAAKTPLG+KAKEAMDKGELVSDDLVVGI+DEAM +P CQKGF
Sbjct: 56  DEFCLCHLSTGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIMDEAMNRPKCQKGF 115

Query: 119 ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKF 178
           ILDGFPRT  QA+KLDEML ++G ++DKVLNFAIDD+VLEERITGRWIHPSSGR+YHTKF
Sbjct: 116 ILDGFPRTVTQAEKLDEMLNRRGAQIDKVLNFAIDDSVLEERITGRWIHPSSGRSYHTKF 175

Query: 179 APPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPP 238
           APPKVPGVDD+TGEPLIQRKDD A VL+SRL+AFHKQT+PVIDYY+KK  +  + AEK P
Sbjct: 176 APPKVPGVDDLTGEPLIQRKDDNADVLRSRLDAFHKQTQPVIDYYAKKENLVNIPAEKAP 235

Query: 239 QE 240
           +E
Sbjct: 236 EE 237

This small ubiquitous enzyme is essential for maintenance and cell growth.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q54QJ9|KAD2_DICDI Adenylate kinase 2, mitochondrial OS=Dictyostelium discoideum GN=adkA PE=3 SV=1

 Score =  265 bits (677), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 120/197 (60%), Positives = 154/197 (78%)

Query: 40  VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
           V   GPPGSGKGTQ+P++K++YCLCHL+TGDMLRAA+   T  G +AK  MD+G LV D+
Sbjct: 31  VVFIGPPGSGKGTQAPLVKEDYCLCHLSTGDMLRAAIEQGTETGKQAKTIMDQGGLVPDE 90

Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
           ++V +I E ++ P C+KGFILDGFPRT  QA+KLD+ML +  KK+D VL+FAIDD++L +
Sbjct: 91  VMVNMIKENIQTPECKKGFILDGFPRTVPQAEKLDKMLAEDNKKIDHVLDFAIDDSLLVK 150

Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
           RITGR +HPSSGR+YH +F PPKV  +DD+TGEPLIQR DD   VLK RLE+FHK T PV
Sbjct: 151 RITGRLVHPSSGRSYHREFFPPKVDMIDDITGEPLIQRSDDNEEVLKKRLESFHKNTTPV 210

Query: 220 IDYYSKKGIVAQLHAEK 236
           + YY  KGI++ + A K
Sbjct: 211 LGYYQNKGILSTIDASK 227

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B4KLY1|KAD2_DROMO Adenylate kinase 2, mitochondrial OS=Drosophila mojavensis GN=Adk2 PE=3 SV=1

 Score =  264 bits (675), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 119/204 (58%), Positives = 160/204 (78%)

Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           L GPPGSGKGTQ+P++K+++C+CHL+TGDMLRA +A+ + LG + K+ MD+G+LVSDDLV
Sbjct: 23  LLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEIASGSKLGAELKKVMDEGKLVSDDLV 82

Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
           V +ID  + KP C+ GF+LDGFPRT VQAQKLD +L+K+   +D V+ FAIDD +L  RI
Sbjct: 83  VDMIDSNLDKPECKNGFLLDGFPRTVVQAQKLDSLLDKRKTSLDAVIEFAIDDNLLVRRI 142

Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
           TGR IH +SGR+YH +FAPPKVP  DD+TGEPL++R DD A  LK RLEA+HKQT+P++D
Sbjct: 143 TGRLIHQASGRSYHEEFAPPKVPMKDDITGEPLMKRSDDNAEALKKRLEAYHKQTKPLVD 202

Query: 222 YYSKKGIVAQLHAEKPPQEVTSEV 245
           YY  +G+  ++ A K   +V S +
Sbjct: 203 YYGLRGLHFKVDAAKKASDVFSTI 226

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila mojavensis (taxid: 7230)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q74ZL1|KAD1_ASHGO Adenylate kinase 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ADK1 PE=3 SV=1

 Score =  263 bits (673), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 125/217 (57%), Positives = 163/217 (75%), Gaps = 6/217 (2%)

Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
           R++LI     GPPG+GKGTQ+P +K+++C+CHLATGDMLR+ VA +T LG++AK+ MD+G
Sbjct: 64  RMVLI-----GPPGAGKGTQAPKLKEKFCVCHLATGDMLRSQVAKQTALGVQAKKIMDQG 118

Query: 94  ELVSDDLVVGII-DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
            LVSD+++V +I DE    P C  GFILDGFPRT  QAQKLDEML  QGK +D+ +   I
Sbjct: 119 GLVSDEIMVNMIKDELRSNPECANGFILDGFPRTIPQAQKLDEMLVAQGKPLDRAVELKI 178

Query: 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 212
           DD +L  RITGR +HP+SGR+YH  F PPKV   DDVTG+PL+QR DD A  LK RL+A+
Sbjct: 179 DDELLVARITGRLVHPASGRSYHKLFNPPKVAMTDDVTGDPLVQRSDDNADALKKRLDAY 238

Query: 213 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
           H QTEP++D+Y K GI A + A +PP+ V S++ KAL
Sbjct: 239 HAQTEPIVDFYKKTGIWAGVDASQPPKTVWSDILKAL 275

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth. Functions both in cytoplasm and mitochondrion intermembrane space.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9U915|KAD2_DROME Adenylate kinase 2, mitochondrial OS=Drosophila melanogaster GN=Adk2 PE=1 SV=1

 Score =  262 bits (670), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 120/210 (57%), Positives = 161/210 (76%)

Query: 36  ILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL 95
           I I   L GPPGSGKGTQ+P++K+++C+CHL+TGDMLRA +++ + LG + K+ MD G+L
Sbjct: 17  IGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDAGKL 76

Query: 96  VSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDA 155
           VSDDLVV +ID  + KP C+ GF+LDGFPRT VQA+KLD +L+K+   +D V+ FAIDD+
Sbjct: 77  VSDDLVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDKRKTNLDAVIEFAIDDS 136

Query: 156 VLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQ 215
           +L  RITGR IH +SGR+YH +FAPPK P  DDVTGEPLI+R DD A  LK RLEA+HKQ
Sbjct: 137 LLVRRITGRLIHQASGRSYHEEFAPPKKPMTDDVTGEPLIRRSDDNAEALKKRLEAYHKQ 196

Query: 216 TEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 245
           T+P++DYY  +G+  ++ A K   +V S +
Sbjct: 197 TKPLVDYYGLRGLHFKVDAAKKSSDVFSTI 226

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B3MCQ5|KAD2_DROAN Adenylate kinase 2, mitochondrial OS=Drosophila ananassae GN=Adk2 PE=3 SV=1

 Score =  261 bits (666), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 119/210 (56%), Positives = 160/210 (76%)

Query: 36  ILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL 95
           I I   L GPPGSGKGTQ+P++K+++C+CHL+TGDMLRA +++ + LG + K+ MD G+L
Sbjct: 17  IGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDAGKL 76

Query: 96  VSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDA 155
           VSDDLVV +ID  + KP C+ GF+LDGFPRT VQA+KLD +L+K+   +D V+ FAIDD+
Sbjct: 77  VSDDLVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDKRKANLDAVIEFAIDDS 136

Query: 156 VLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQ 215
           +L  RITGR IH +SGR+YH +FAPPK P  DDVTGEPL++R DD A  LK RLEA+HKQ
Sbjct: 137 LLVRRITGRLIHQASGRSYHEEFAPPKKPMTDDVTGEPLMRRSDDNAEALKKRLEAYHKQ 196

Query: 216 TEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 245
           T P++DYY  +G+  ++ A K   +V S +
Sbjct: 197 TRPLVDYYGLRGLHFKVDAAKKSSDVFSTI 226

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila ananassae (taxid: 7217)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B4QBH8|KAD2_DROSI Adenylate kinase 2, mitochondrial OS=Drosophila simulans GN=Adk2 PE=3 SV=1

 Score =  260 bits (665), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 119/210 (56%), Positives = 161/210 (76%)

Query: 36  ILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL 95
           I I   L GPPGSGKGTQ+P++K+++C+CHL+TGDMLRA +++ + LG + K+ MD G+L
Sbjct: 17  IGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDAGKL 76

Query: 96  VSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDA 155
           VSD+LVV +ID  + KP C+ GF+LDGFPRT VQA+KLD +L+K+   +D V+ FAIDD+
Sbjct: 77  VSDELVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDKRKTNLDAVIEFAIDDS 136

Query: 156 VLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQ 215
           +L  RITGR IH +SGR+YH +FAPPK P  DDVTGEPLI+R DD A  LK RLEA+HKQ
Sbjct: 137 LLVRRITGRLIHQASGRSYHEEFAPPKKPMTDDVTGEPLIRRSDDNAEALKKRLEAYHKQ 196

Query: 216 TEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 245
           T+P++DYY  +G+  ++ A K   +V S +
Sbjct: 197 TKPLVDYYGLRGLHFKVDAAKKSSDVFSTI 226

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila simulans (taxid: 7240)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
224121954	246	predicted protein [Populus trichocarpa]	0.980	1.0	0.896	1e-128
225456268	245	PREDICTED: adenylate kinase B [Vitis vin	0.972	0.995	0.891	1e-127
115485231	243	Os11g0312400 [Oryza sativa Japonica Grou	0.964	0.995	0.898	1e-127
357477153	243	Adenylate kinase B [Medicago truncatula]	0.964	0.995	0.9	1e-126
449469623	247	PREDICTED: adenylate kinase B-like [Cucu	0.976	0.991	0.892	1e-126
356513991	242	PREDICTED: adenylate kinase B-like [Glyc	0.960	0.995	0.902	1e-125
255540299	241	adenylate kinase 1, putative [Ricinus co	0.956	0.995	0.906	1e-125
297738377	301	unnamed protein product [Vitis vinifera]	0.976	0.813	0.872	1e-125
225425838	245	PREDICTED: adenylate kinase B-like [Viti	0.976	1.0	0.872	1e-124
255547804	242	adenylate kinase 1, putative [Ricinus co	0.960	0.995	0.878	1e-124

>gi|224121954|ref|XP_002318714.1| predicted protein [Populus trichocarpa] gi|222859387|gb|EEE96934.1| predicted protein [Populus trichocarpa]

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/251 (89%), Positives = 238/251 (94%), Gaps = 5/251 (1%)

Query: 1   MASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60
           MASS+AANLEDVPSV+LMTELLRRMKC+SKPDKRLILI     GPPGSGKGTQSPIIKDE
Sbjct: 1   MASSAAANLEDVPSVNLMTELLRRMKCSSKPDKRLILI-----GPPGSGKGTQSPIIKDE 55

Query: 61  YCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFIL 120
           YCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFIL
Sbjct: 56  YCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFIL 115

Query: 121 DGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAP 180
           DGFPRT VQA+KLDEML+KQG K+DKVLNFAIDDA+LEERITGRWIHPSSGRTYHTKFAP
Sbjct: 116 DGFPRTVVQAEKLDEMLQKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAP 175

Query: 181 PKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQE 240
           PKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH+QTEPVI YY  KG VA+LHAEK P++
Sbjct: 176 PKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHRQTEPVIGYYKNKGAVAELHAEKSPKD 235

Query: 241 VTSEVQKALSA 251
           VT+EVQK LS+
Sbjct: 236 VTAEVQKVLSS 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456268|ref|XP_002283508.1| PREDICTED: adenylate kinase B [Vitis vinifera] gi|297734386|emb|CBI15633.3| unnamed protein product [Vitis vinifera]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/249 (89%), Positives = 238/249 (95%), Gaps = 5/249 (2%)

Query: 3   SSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62
           ++ +ANLED+PSVDLMTELLRRMKC++KPDKRLILI     GPPGSGKGTQSPIIKDEYC
Sbjct: 2   ATLSANLEDIPSVDLMTELLRRMKCSTKPDKRLILI-----GPPGSGKGTQSPIIKDEYC 56

Query: 63  LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDG 122
           LCHLATGDMLRAAVAAKTPLGIKAKEAM+KGELVSDDLVVGIIDEA+KKPSCQKGFILDG
Sbjct: 57  LCHLATGDMLRAAVAAKTPLGIKAKEAMEKGELVSDDLVVGIIDEAIKKPSCQKGFILDG 116

Query: 123 FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPK 182
           FPRTEVQAQKLDEMLEKQG KVDKVLNFAIDD +LEERITGRW+HPSSGRTYHTKFAPPK
Sbjct: 117 FPRTEVQAQKLDEMLEKQGVKVDKVLNFAIDDGILEERITGRWMHPSSGRTYHTKFAPPK 176

Query: 183 VPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVT 242
           V G+DDVTGEPLIQRKDDTAAVLKSRLEAFH+QTEPVIDYY+KKGIVA LHAEK P+EVT
Sbjct: 177 VHGIDDVTGEPLIQRKDDTAAVLKSRLEAFHRQTEPVIDYYTKKGIVANLHAEKSPKEVT 236

Query: 243 SEVQKALSA 251
           +EVQKALS+
Sbjct: 237 TEVQKALSS 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115485231|ref|NP_001067759.1| Os11g0312400 [Oryza sativa Japonica Group] gi|585338|sp|Q08480.1|KAD2_ORYSJ RecName: Full=Adenylate kinase B; Short=AK B; AltName: Full=ATP-AMP transphosphorylase B gi|391879|dbj|BAA01181.1| adenylate kinase-b [Oryza sativa] gi|62734015|gb|AAX96124.1| adenylate kinase b (ec 2.7.4.3) (atp-amp transphosphorylase) [Oryza sativa Japonica Group] gi|77550163|gb|ABA92960.1| Adenylate kinase B, putative, expressed [Oryza sativa Japonica Group] gi|113644981|dbj|BAF28122.1| Os11g0312400 [Oryza sativa Japonica Group] gi|125534192|gb|EAY80740.1| hypothetical protein OsI_35920 [Oryza sativa Indica Group] gi|125576978|gb|EAZ18200.1| hypothetical protein OsJ_33744 [Oryza sativa Japonica Group] gi|215707086|dbj|BAG93546.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/247 (89%), Positives = 235/247 (95%), Gaps = 5/247 (2%)

Query: 4   SSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63
           ++AANLEDVPS+DLM ELLRRMKC+SKPDKRLIL+     GPPGSGKGTQSPIIKDEYCL
Sbjct: 2   AAAANLEDVPSMDLMNELLRRMKCSSKPDKRLILV-----GPPGSGKGTQSPIIKDEYCL 56

Query: 64  CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGF 123
           CHLATGDMLRAAVAAKTPLG+KAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGF
Sbjct: 57  CHLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGF 116

Query: 124 PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKV 183
           PRT VQAQKLDEMLEK+G KVDKVLNFAIDD++LEERITGRWIHPSSGR+YHTKFAPPKV
Sbjct: 117 PRTVVQAQKLDEMLEKKGTKVDKVLNFAIDDSILEERITGRWIHPSSGRSYHTKFAPPKV 176

Query: 184 PGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTS 243
           PGVDDVTGEPLIQRKDDTA VLKSRLEAFHKQTEPVIDYYSKK +VA LHAEKPP+EVT+
Sbjct: 177 PGVDDVTGEPLIQRKDDTAEVLKSRLEAFHKQTEPVIDYYSKKALVANLHAEKPPKEVTA 236

Query: 244 EVQKALS 250
           EVQK LS
Sbjct: 237 EVQKVLS 243

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477153|ref|XP_003608862.1| Adenylate kinase B [Medicago truncatula] gi|217075582|gb|ACJ86151.1| unknown [Medicago truncatula] gi|355509917|gb|AES91059.1| Adenylate kinase B [Medicago truncatula] gi|388515225|gb|AFK45674.1| unknown [Medicago truncatula]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/250 (90%), Positives = 236/250 (94%), Gaps = 8/250 (3%)

Query: 1   MASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60
           MASS   NLEDVPSVDLM+ELLRR KC+SKPDKRLIL+     GPPGSGKGTQSPIIKDE
Sbjct: 1   MASS---NLEDVPSVDLMSELLRRFKCSSKPDKRLILV-----GPPGSGKGTQSPIIKDE 52

Query: 61  YCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFIL 120
           YCLCHLATGDMLRAAVAAKTPLGIKAKEAM+KGELVSDDLVVGIIDEAMKKPSCQKGFIL
Sbjct: 53  YCLCHLATGDMLRAAVAAKTPLGIKAKEAMEKGELVSDDLVVGIIDEAMKKPSCQKGFIL 112

Query: 121 DGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAP 180
           DGFPRT VQAQKLDEML+KQG K+DKVLNFAIDDA+LEERITGRWIHPSSGRTYHTKFAP
Sbjct: 113 DGFPRTVVQAQKLDEMLQKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAP 172

Query: 181 PKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQE 240
           PKV GVDDVTGEPLIQRKDDTAAVLKSRLE+FH+QTEPVIDYYSKKGIVA LHAEKPP+E
Sbjct: 173 PKVSGVDDVTGEPLIQRKDDTAAVLKSRLESFHRQTEPVIDYYSKKGIVASLHAEKPPKE 232

Query: 241 VTSEVQKALS 250
           VTSEV+K LS
Sbjct: 233 VTSEVEKVLS 242

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469623|ref|XP_004152518.1| PREDICTED: adenylate kinase B-like [Cucumis sativus] gi|449521377|ref|XP_004167706.1| PREDICTED: adenylate kinase B-like [Cucumis sativus]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/250 (89%), Positives = 236/250 (94%), Gaps = 5/250 (2%)

Query: 2   ASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61
           A+S+A  LEDVPSVDLMTELLRRMKC+SKPDKRLILI     GPPGSGKGTQSPIIKD+Y
Sbjct: 3   ANSAALALEDVPSVDLMTELLRRMKCSSKPDKRLILI-----GPPGSGKGTQSPIIKDDY 57

Query: 62  CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILD 121
           CLCHLATGDMLRAAVAAKTPLG+KAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILD
Sbjct: 58  CLCHLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILD 117

Query: 122 GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPP 181
           GFPRT VQAQKLDE+LEKQG +VDKVLNFAIDDA+LEERITGRWIHPSSGR+YHTKFAPP
Sbjct: 118 GFPRTVVQAQKLDEVLEKQGVRVDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPP 177

Query: 182 KVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEV 241
           K PGVDDVTGEPLIQRKDDT AVLKSRLEAFH+QTEPVIDYY+KKGIVA LHAEK P+EV
Sbjct: 178 KTPGVDDVTGEPLIQRKDDTVAVLKSRLEAFHRQTEPVIDYYAKKGIVANLHAEKAPKEV 237

Query: 242 TSEVQKALSA 251
           TSEVQK LS+
Sbjct: 238 TSEVQKVLSS 247

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513991|ref|XP_003525691.1| PREDICTED: adenylate kinase B-like [Glycine max] gi|356513993|ref|XP_003525692.1| PREDICTED: adenylate kinase B-like [Glycine max] gi|255637862|gb|ACU19250.1| unknown [Glycine max]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/246 (90%), Positives = 233/246 (94%), Gaps = 5/246 (2%)

Query: 5   SAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64
           +  NLEDVPS+DLMTELLRR+KC+SKPDKRLILI     GPPGSGKGTQSPIIKDEYCLC
Sbjct: 2   ANTNLEDVPSLDLMTELLRRLKCSSKPDKRLILI-----GPPGSGKGTQSPIIKDEYCLC 56

Query: 65  HLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFP 124
           HLATGDMLRAAVAAKTPLG+KAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFP
Sbjct: 57  HLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFP 116

Query: 125 RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVP 184
           RT VQAQKLDEML+KQG KVDKVLNFAIDDA+LEERITGRWIHPSSGRTYHTKF+PPKV 
Sbjct: 117 RTVVQAQKLDEMLQKQGVKVDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFSPPKVL 176

Query: 185 GVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSE 244
           GVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKG+VA LHAEKPP+EVT E
Sbjct: 177 GVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGLVANLHAEKPPKEVTVE 236

Query: 245 VQKALS 250
           V+K LS
Sbjct: 237 VEKVLS 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540299|ref|XP_002511214.1| adenylate kinase 1, putative [Ricinus communis] gi|223550329|gb|EEF51816.1| adenylate kinase 1, putative [Ricinus communis]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/245 (90%), Positives = 233/245 (95%), Gaps = 5/245 (2%)

Query: 7   ANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL 66
           ANLEDVPSVDLMTELLRRMKC+SKPDKRLILI     GPPGSGKGTQSPIIKDEYCLCHL
Sbjct: 2   ANLEDVPSVDLMTELLRRMKCSSKPDKRLILI-----GPPGSGKGTQSPIIKDEYCLCHL 56

Query: 67  ATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRT 126
           ATGDMLRAAVAAKTPLG+KAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRT
Sbjct: 57  ATGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRT 116

Query: 127 EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGV 186
            VQAQKLDEMLEKQG K+DKVLNFAIDDA+LEERITGRWIHPSSGRTYHTKFAPPKV GV
Sbjct: 117 VVQAQKLDEMLEKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVAGV 176

Query: 187 DDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQ 246
           DDV+GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYY +KG+VA+L AEKPP+ VT+EVQ
Sbjct: 177 DDVSGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYKQKGVVAELPAEKPPKVVTAEVQ 236

Query: 247 KALSA 251
           K LS+
Sbjct: 237 KVLSS 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738377|emb|CBI27578.3| unnamed protein product [Vitis vinifera]

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/250 (87%), Positives = 233/250 (93%), Gaps = 5/250 (2%)

Query: 1   MASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60
           M SSS   LE++PSVDLMTELLRRMKC+SKPDKRLIL+     GPPGSGKGTQSPIIKDE
Sbjct: 57  MGSSSGVVLEEIPSVDLMTELLRRMKCSSKPDKRLILV-----GPPGSGKGTQSPIIKDE 111

Query: 61  YCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFIL 120
           YCLCHLATGDMLR AVAAKTPLGIKAKEAMDKGELV+DDLVVGIIDEAMKKPSCQKGFIL
Sbjct: 112 YCLCHLATGDMLRVAVAAKTPLGIKAKEAMDKGELVTDDLVVGIIDEAMKKPSCQKGFIL 171

Query: 121 DGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAP 180
           DGFPRT VQA+KLDEML KQG K+DKVLNFAIDDA+LEERITGRWIHPSSGRTYHTKFAP
Sbjct: 172 DGFPRTVVQAEKLDEMLAKQGNKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAP 231

Query: 181 PKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQE 240
           PKV GVDDVTGEPLIQRKDDT  VLKSRLEAFH+QTEPVIDYY+KK ++AQLHAEKPP+E
Sbjct: 232 PKVSGVDDVTGEPLIQRKDDTPEVLKSRLEAFHRQTEPVIDYYAKKNVLAQLHAEKPPKE 291

Query: 241 VTSEVQKALS 250
           V++EVQKALS
Sbjct: 292 VSAEVQKALS 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425838|ref|XP_002266762.1| PREDICTED: adenylate kinase B-like [Vitis vinifera]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/250 (87%), Positives = 233/250 (93%), Gaps = 5/250 (2%)

Query: 1   MASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60
           M SSS   LE++PSVDLMTELLRRMKC+SKPDKRLIL+     GPPGSGKGTQSPIIKDE
Sbjct: 1   MGSSSGVVLEEIPSVDLMTELLRRMKCSSKPDKRLILV-----GPPGSGKGTQSPIIKDE 55

Query: 61  YCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFIL 120
           YCLCHLATGDMLR AVAAKTPLGIKAKEAMDKGELV+DDLVVGIIDEAMKKPSCQKGFIL
Sbjct: 56  YCLCHLATGDMLRVAVAAKTPLGIKAKEAMDKGELVTDDLVVGIIDEAMKKPSCQKGFIL 115

Query: 121 DGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAP 180
           DGFPRT VQA+KLDEML KQG K+DKVLNFAIDDA+LEERITGRWIHPSSGRTYHTKFAP
Sbjct: 116 DGFPRTVVQAEKLDEMLAKQGNKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAP 175

Query: 181 PKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQE 240
           PKV GVDDVTGEPLIQRKDDT  VLKSRLEAFH+QTEPVIDYY+KK ++AQLHAEKPP+E
Sbjct: 176 PKVSGVDDVTGEPLIQRKDDTPEVLKSRLEAFHRQTEPVIDYYAKKNVLAQLHAEKPPKE 235

Query: 241 VTSEVQKALS 250
           V++EVQKALS
Sbjct: 236 VSAEVQKALS 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547804|ref|XP_002514959.1| adenylate kinase 1, putative [Ricinus communis] gi|223546010|gb|EEF47513.1| adenylate kinase 1, putative [Ricinus communis]

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/246 (87%), Positives = 233/246 (94%), Gaps = 5/246 (2%)

Query: 6   AANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH 65
           A +LEDVPSVD+MTELLRR +C+SK DKRL+ I     GPPGSGKGTQSPIIKD+YCLCH
Sbjct: 2   ATSLEDVPSVDIMTELLRRFQCSSKTDKRLVFI-----GPPGSGKGTQSPIIKDDYCLCH 56

Query: 66  LATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPR 125
           LATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF+LDGFPR
Sbjct: 57  LATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFVLDGFPR 116

Query: 126 TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG 185
           T VQAQ+LDEMLEKQG KVDKVL+FAIDD++LEERITGRWIHPSSGRTYHTKFAPPKVPG
Sbjct: 117 TVVQAQRLDEMLEKQGTKVDKVLDFAIDDSILEERITGRWIHPSSGRTYHTKFAPPKVPG 176

Query: 186 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 245
           VDDVTGEPLIQRKDDT AVLKSRLEAFHKQTEPVIDYY+KKG++AQLHAEKPP+EVT+EV
Sbjct: 177 VDDVTGEPLIQRKDDTPAVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTAEV 236

Query: 246 QKALSA 251
           QK LS+
Sbjct: 237 QKVLSS 242

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
UNIPROTKB|Q08480	243	ADK-B "Adenylate kinase B" [Or	0.964	0.995	0.898	1e-116
UNIPROTKB|Q08479	241	ADK-A "Adenylate kinase A" [Or	0.956	0.995	0.885	1.2e-113
TAIR|locus:2167316	246	ADK1 "adenylate kinase 1" [Ara	0.976	0.995	0.788	1.1e-105
TAIR|locus:2177527	248	AT5G50370 [Arabidopsis thalian	0.976	0.987	0.777	8.6e-104
DICTYBASE|DDB_G0283805	276	adkA "adenylate kinase" [Dicty	0.852	0.775	0.566	8.5e-65
FB|FBgn0022708	240	Adk2 "Adenylate kinase-2" [Dro	0.812	0.85	0.578	3.7e-64
MGI|MGI:87978	239	Ak2 "adenylate kinase 2" [Mus	0.832	0.874	0.540	1.5e-60
CGD|CAL0004216	249	ADK1 [Candida albicans (taxid:	0.960	0.967	0.508	1.9e-60
UNIPROTKB|E2RE39	241	AK2 "Uncharacterized protein"	0.832	0.867	0.535	8.1e-60
UNIPROTKB|P08166	241	AK2 "Adenylate kinase 2, mitoc	0.832	0.867	0.535	1e-59

UNIPROTKB|Q08480 ADK-B "Adenylate kinase B" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1150 (409.9 bits), Expect = 1.0e-116, P = 1.0e-116
 Identities = 222/247 (89%), Positives = 235/247 (95%)

Query:     4 SSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63
             ++AANLEDVPS+DLM ELLRRMKC+SKPDKRLIL+     GPPGSGKGTQSPIIKDEYCL
Sbjct:     2 AAAANLEDVPSMDLMNELLRRMKCSSKPDKRLILV-----GPPGSGKGTQSPIIKDEYCL 56

Query:    64 CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGF 123
             CHLATGDMLRAAVAAKTPLG+KAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGF
Sbjct:    57 CHLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGF 116

Query:   124 PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKV 183
             PRT VQAQKLDEMLEK+G KVDKVLNFAIDD++LEERITGRWIHPSSGR+YHTKFAPPKV
Sbjct:   117 PRTVVQAQKLDEMLEKKGTKVDKVLNFAIDDSILEERITGRWIHPSSGRSYHTKFAPPKV 176

Query:   184 PGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTS 243
             PGVDDVTGEPLIQRKDDTA VLKSRLEAFHKQTEPVIDYYSKK +VA LHAEKPP+EVT+
Sbjct:   177 PGVDDVTGEPLIQRKDDTAEVLKSRLEAFHKQTEPVIDYYSKKALVANLHAEKPPKEVTA 236

Query:   244 EVQKALS 250
             EVQK LS
Sbjct:   237 EVQKVLS 243

GO:0004017 "adenylate kinase activity" evidence=IGI;ISS

GO:0005524 "ATP binding" evidence=IGI

GO:0006163 "purine nucleotide metabolic process" evidence=IEP

UNIPROTKB|Q08479 ADK-A "Adenylate kinase A" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1121 (399.7 bits), Expect = 1.2e-113, P = 1.2e-113
 Identities = 217/245 (88%), Positives = 231/245 (94%)

Query:     6 AANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH 65
             AANLEDVPS++LMTELLRRMKC+SKPDKR+IL+     GPPG GKGTQSP+IKDE+CLCH
Sbjct:     2 AANLEDVPSMELMTELLRRMKCSSKPDKRVILV-----GPPGCGKGTQSPLIKDEFCLCH 56

Query:    66 LATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPR 125
             LATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK SCQKGFILDGFPR
Sbjct:    57 LATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKTSCQKGFILDGFPR 116

Query:   126 TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG 185
             T VQAQKLDEML KQG K+DKVLNFAIDDA+LEERITGRWIHPSSGR+YHTKFAPPK PG
Sbjct:   117 TVVQAQKLDEMLAKQGTKIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPG 176

Query:   186 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 245
             +DDVTGEPLIQRKDDTAAVLKSRLEAFH QT+PVIDYY+KKGIVA LHAEKPP+EVT EV
Sbjct:   177 LDDVTGEPLIQRKDDTAAVLKSRLEAFHVQTKPVIDYYTKKGIVANLHAEKPPKEVTVEV 236

Query:   246 QKALS 250
             QKALS
Sbjct:   237 QKALS 241

GO:0004017 "adenylate kinase activity" evidence=IGI;ISS

GO:0005524 "ATP binding" evidence=IGI

GO:0006163 "purine nucleotide metabolic process" evidence=IEP

TAIR|locus:2167316 ADK1 "adenylate kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1046 (373.3 bits), Expect = 1.1e-105, P = 1.1e-105
 Identities = 198/251 (78%), Positives = 226/251 (90%)

Query:     1 MASS-SAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59
             MA+  +AA+LEDV +VDLM+ELLRR+KC+ KPDKRLI I     GPPGSGKGTQSP++KD
Sbjct:     1 MATGGAAADLEDVQTVDLMSELLRRLKCSQKPDKRLIFI-----GPPGSGKGTQSPVVKD 55

Query:    60 EYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFI 119
             EYCLCHL+TGDMLRAAVA+KTPLG+KAKEAM+KGELVSDDLVVGIIDEAM KP CQKGFI
Sbjct:    56 EYCLCHLSTGDMLRAAVASKTPLGVKAKEAMEKGELVSDDLVVGIIDEAMNKPKCQKGFI 115

Query:   120 LDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFA 179
             LDGFPRT  QA+KLDEML+++G ++DKVLNFAIDDA+LEERITGRWIHPSSGR+YHTKFA
Sbjct:   116 LDGFPRTVTQAEKLDEMLKRRGTEIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFA 175

Query:   180 PPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQ 239
             PPK PGVDD+TGEPLIQRKDD A VLKSRL AFH QT+PVIDYY+KK ++  + AEK PQ
Sbjct:   176 PPKTPGVDDITGEPLIQRKDDNADVLKSRLAAFHSQTQPVIDYYAKKAVLTNIQAEKAPQ 235

Query:   240 EVTSEVQKALS 250
             EVTSEV+KALS
Sbjct:   236 EVTSEVKKALS 246

GO:0004017 "adenylate kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2177527 AT5G50370 [Arabidopsis thaliana (taxid:3702)]

 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 196/252 (77%), Positives = 226/252 (89%)

Query:     1 MASSSAAN--LEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIK 58
             MA+SSAA+  +ED+ +VDLM+ELLRRMKCASKPDKRL+ I     GPPGSGKGTQSP+IK
Sbjct:     1 MATSSAASVDMEDIQTVDLMSELLRRMKCASKPDKRLVFI-----GPPGSGKGTQSPVIK 55

Query:    59 DEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 118
             DE+CLCHL+TGDMLRAAVAAKTPLG+KAKEAMDKGELVSDDLVVGI+DEAM +P CQKGF
Sbjct:    56 DEFCLCHLSTGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIMDEAMNRPKCQKGF 115

Query:   119 ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKF 178
             ILDGFPRT  QA+KLDEML ++G ++DKVLNFAIDD+VLEERITGRWIHPSSGR+YHTKF
Sbjct:   116 ILDGFPRTVTQAEKLDEMLNRRGAQIDKVLNFAIDDSVLEERITGRWIHPSSGRSYHTKF 175

Query:   179 APPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPP 238
             APPKVPGVDD+TGEPLIQRKDD A VL+SRL+AFHKQT+PVIDYY+KK  +  + AEK P
Sbjct:   176 APPKVPGVDDLTGEPLIQRKDDNADVLRSRLDAFHKQTQPVIDYYAKKENLVNIPAEKAP 235

Query:   239 QEVTSEVQKALS 250
             +EVT  V+K +S
Sbjct:   236 EEVTKVVKKVVS 247

GO:0004017 "adenylate kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

DICTYBASE|DDB_G0283805 adkA "adenylate kinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 123/217 (56%), Positives = 164/217 (75%)

Query:    30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEA 89
             K D+ L ++ +   GPPGSGKGTQ+P++K++YCLCHL+TGDMLRAA+   T  G +AK  
Sbjct:    24 KRDEGLRVVFI---GPPGSGKGTQAPLVKEDYCLCHLSTGDMLRAAIEQGTETGKQAKTI 80

Query:    90 MDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLN 149
             MD+G LV D+++V +I E ++ P C+KGFILDGFPRT  QA+KLD+ML +  KK+D VL+
Sbjct:    81 MDQGGLVPDEVMVNMIKENIQTPECKKGFILDGFPRTVPQAEKLDKMLAEDNKKIDHVLD 140

Query:   150 FAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL 209
             FAIDD++L +RITGR +HPSSGR+YH +F PPKV  +DD+TGEPLIQR DD   VLK RL
Sbjct:   141 FAIDDSLLVKRITGRLVHPSSGRSYHREFFPPKVDMIDDITGEPLIQRSDDNEEVLKKRL 200

Query:   210 EAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQ 246
             E+FHK T PV+ YY  KGI++ + A K    V+  ++
Sbjct:   201 ESFHKNTTPVLGYYQNKGILSTIDASKSAPFVSHTIK 237

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA;ISS

GO:0006166 "purine ribonucleoside salvage" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0022708 Adk2 "Adenylate kinase-2" [Drosophila melanogaster (taxid:7227)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 118/204 (57%), Positives = 159/204 (77%)

Query:    42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
             L GPPGSGKGTQ+P++K+++C+CHL+TGDMLRA +++ + LG + K+ MD G+LVSDDLV
Sbjct:    23 LLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDAGKLVSDDLV 82

Query:   102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
             V +ID  + KP C+ GF+LDGFPRT VQA+KLD +L+K+   +D V+ FAIDD++L  RI
Sbjct:    83 VDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDKRKTNLDAVIEFAIDDSLLVRRI 142

Query:   162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
             TGR IH +SGR+YH +FAPPK P  DDVTGEPLI+R DD A  LK RLEA+HKQT+P++D
Sbjct:   143 TGRLIHQASGRSYHEEFAPPKKPMTDDVTGEPLIRRSDDNAEALKKRLEAYHKQTKPLVD 202

Query:   222 YYSKKGIVAQLHAEKPPQEVTSEV 245
             YY  +G+  ++ A K   +V S +
Sbjct:   203 YYGLRGLHFKVDAAKKSSDVFSTI 226

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0004017 "adenylate kinase activity" evidence=ISS;IMP;IDA

GO:0006172 "ADP biosynthetic process" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

MGI|MGI:87978 Ak2 "adenylate kinase 2" [Mus musculus (taxid:10090)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 113/209 (54%), Positives = 156/209 (74%)

Query:    42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
             L GPPG+GKGTQ+P + + +C+CHLATGDMLRA VA+ + LG K K  MD G+LVSD++V
Sbjct:    20 LLGPPGAGKGTQAPKLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMV 79

Query:   102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
             V +I++ ++ PSC+ GF+LDGFPRT  QA+ LD+++EK+ +K+D V+ F+I D++L  RI
Sbjct:    80 VELIEKNLETPSCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIQDSLLIRRI 139

Query:   162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
             TGR IHP SGR+YH +F PPK P  DD+TGEPLI+R DD    LK+RLEA+H QT P+++
Sbjct:   140 TGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKTRLEAYHTQTTPLVE 199

Query:   222 YYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
             YY K+GI   + A + P  V + +  A S
Sbjct:   200 YYRKRGIHCAIDASQTPDIVFASILAAFS 228

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0006172 "ADP biosynthetic process" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=ISO

GO:0036126 "sperm flagellum" evidence=IDA

GO:0046033 "AMP metabolic process" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0046060 "dATP metabolic process" evidence=ISO

GO:0046939 "nucleotide phosphorylation" evidence=ISO

GO:0097226 "sperm mitochondrial sheath" evidence=IDA

CGD|CAL0004216 ADK1 [Candida albicans (taxid:5476)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 125/246 (50%), Positives = 168/246 (68%)

Query:     8 NLEDVPS-VDLMTELLRRM--KCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64
             ++ED+ + V  + E ++ +  K    PD    + +V L GPPG+GKGTQ+P +K+++C C
Sbjct:     2 SIEDLKNTVTKLQERIQELEKKAGIIPDVPKSVRMV-LIGPPGAGKGTQAPNLKEKFCAC 60

Query:    65 HLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII-DEAMKKPSCQKGFILDGF 123
             HLATGDMLRA VAAKT LG++AK+ MD+G LVSD+++V +I  E      C KGFILDGF
Sbjct:    61 HLATGDMLRAQVAAKTALGVEAKKIMDQGGLVSDEIMVNMIKSELENNQECSKGFILDGF 120

Query:   124 PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKV 183
             PRT  QA+KLD MLE +   ++K +   IDD +L  RITGR +HP+SGR+YH  F PPK 
Sbjct:   121 PRTIPQAEKLDSMLESRKTPLEKAVELKIDDELLVARITGRLVHPASGRSYHKLFNPPKK 180

Query:   184 PGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTS 243
                DDVTGEPL+QR DD    LK RL  +HKQTEP++ YY K GI + + A + P +V S
Sbjct:   181 DMTDDVTGEPLVQRSDDNEDALKKRLVTYHKQTEPIVAYYQKTGIWSGVDASQKPTKVWS 240

Query:   244 EVQKAL 249
             ++ K L
Sbjct:   241 DILKCL 246

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0006172 "ADP biosynthetic process" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

UNIPROTKB|E2RE39 AK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 112/209 (53%), Positives = 155/209 (74%)

Query:    42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
             L GPPG+GKGTQ+P + + +C+CHLATGDMLRA VA+ + LG K K  MD G+LVSD++V
Sbjct:    22 LLGPPGAGKGTQAPKLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMV 81

Query:   102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
             V +I++ ++ P C+ GF+LDGFPRT  QA+ LD+++EK+ +K+D V+ F+I D++L  RI
Sbjct:    82 VELIEKNLETPQCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRI 141

Query:   162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
             TGR IHP SGR+YH +F PPK P  DD+TGEPL++R DD    LK RLEA+H QT P++D
Sbjct:   142 TGRLIHPLSGRSYHEEFNPPKEPMKDDITGEPLVRRSDDNEKALKIRLEAYHTQTTPLVD 201

Query:   222 YYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
             YY K+GI + + A + P  V + +  A S
Sbjct:   202 YYRKRGIHSVIDATQTPDVVFASILAAFS 230

GO:0005524 "ATP binding" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

UNIPROTKB|P08166 AK2 "Adenylate kinase 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 112/209 (53%), Positives = 155/209 (74%)

Query:    42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
             L GPPG+GKGTQ+P +   +C+CHLATGDMLRA VA+ + LG K K  MD G+LVSD++V
Sbjct:    22 LLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMV 81

Query:   102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
             + +I++ ++ P C+ GF+LDGFPRT  QA+ LD+++EK+ +K+D V+ F+I D++L  RI
Sbjct:    82 LELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRI 141

Query:   162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
             TGR IHP SGR+YH +F PPK P  DD+TGEPLI+R DD    LK RLEA+H QT P+++
Sbjct:   142 TGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVE 201

Query:   222 YYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
             YYSK+GI + + A + P  V + +  A S
Sbjct:   202 YYSKRGIHSAIDASQTPDVVFASILAAFS 230

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0097226 "sperm mitochondrial sheath" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B4LP08	KAD2_DROVI	2, ., 7, ., 4, ., 3	0.5686	0.8127	0.85	N/A	no
Q28F55	KAD2_XENTR	2, ., 7, ., 4, ., 3	0.5305	0.8486	0.8838	yes	no
Q9WTP6	KAD2_MOUSE	2, ., 7, ., 4, ., 3	0.5352	0.8486	0.8912	yes	no
P29410	KAD2_RAT	2, ., 7, ., 4, ., 3	0.5258	0.8486	0.8912	yes	no
B4MQT3	KAD2_DROWI	2, ., 7, ., 4, ., 3	0.5523	0.8366	0.875	N/A	no
P07170	KAD1_YEAST	2, ., 7, ., 4, ., 3	0.5275	0.8446	0.9549	yes	no
Q9U915	KAD2_DROME	2, ., 7, ., 4, ., 3	0.5714	0.8366	0.875	yes	no
Q7QJX9	KAD2_ANOGA	2, ., 7, ., 4, ., 3	0.5399	0.8486	0.8875	yes	no
Q5A4Q1	KAD12_CANAL	2, ., 7, ., 4, ., 3	0.5529	0.8406	0.8473	N/A	no
B4QBH8	KAD2_DROSI	2, ., 7, ., 4, ., 3	0.5666	0.8366	0.875	N/A	no
Q1HQK0	KAD2_AEDAE	2, ., 7, ., 4, ., 3	0.5514	0.8525	0.8879	N/A	no
B3MCQ5	KAD2_DROAN	2, ., 7, ., 4, ., 3	0.5666	0.8366	0.875	N/A	no
B4I2A8	KAD2_DROSE	2, ., 7, ., 4, ., 3	0.5666	0.8366	0.875	N/A	no
Q9FK35	KAD2_ARATH	2, ., 7, ., 4, ., 3	0.7892	0.9362	0.9475	no	no
Q5REI7	KAD2_PONAB	2, ., 7, ., 4, ., 3	0.5305	0.8486	0.8912	yes	no
Q6FM32	KAD1_CANGA	2, ., 7, ., 4, ., 3	0.5391	0.8406	0.9504	yes	no
Q8AVD3	KAD2_XENLA	2, ., 7, ., 4, ., 3	0.5399	0.8486	0.8838	N/A	no
Q6CK57	KAD1_KLULA	2, ., 7, ., 4, ., 3	0.5483	0.8406	0.9295	yes	no
A3LV51	KAD1_PICST	2, ., 7, ., 4, ., 3	0.5345	0.8406	0.8473	yes	no
B4KLY1	KAD2_DROMO	2, ., 7, ., 4, ., 3	0.5833	0.8127	0.85	N/A	no
B4PAR6	KAD2_DROYA	2, ., 7, ., 4, ., 3	0.5666	0.8366	0.875	N/A	no
P33075	KAD1_SCHPO	2, ., 7, ., 4, ., 3	0.5446	0.8247	0.9409	yes	no
Q4WJ21	KAD1_ASPFU	2, ., 7, ., 4, ., 3	0.5336	0.8844	0.8638	yes	no
Q08479	KAD1_ORYSJ	2, ., 7, ., 4, ., 3	0.8857	0.9561	0.9958	no	no
A1D3M8	KAD1_NEOFI	2, ., 7, ., 4, ., 3	0.5336	0.8844	0.8638	N/A	no
P54819	KAD2_HUMAN	2, ., 7, ., 4, ., 3	0.5305	0.8486	0.8912	yes	no
Q1L8L9	KAD2_DANRE	2, ., 7, ., 4, ., 3	0.5186	0.8525	0.8879	yes	no
B4J672	KAD2_DROGR	2, ., 7, ., 4, ., 3	0.5686	0.8127	0.8571	N/A	no
A7THY5	KAD1_VANPO	2, ., 7, ., 4, ., 3	0.5183	0.8446	0.9506	N/A	no
B0X5E3	KAD2_CULQU	2, ., 7, ., 4, ., 3	0.5432	0.8286	0.8630	N/A	no
B3NQ53	KAD2_DROER	2, ., 7, ., 4, ., 3	0.5625	0.8286	0.8666	N/A	no
Q08480	KAD2_ORYSJ	2, ., 7, ., 4, ., 3	0.8987	0.9641	0.9958	yes	no
Q59W41	KAD11_CANAL	2, ., 7, ., 4, ., 3	0.5483	0.8406	0.8473	N/A	no
Q54QJ9	KAD2_DICDI	2, ., 7, ., 4, ., 3	0.6091	0.7848	0.7137	yes	no
A6ZYI0	KAD1_YEAS7	2, ., 7, ., 4, ., 3	0.5275	0.8446	0.9549	N/A	no
A1CQR5	KAD1_ASPCL	2, ., 7, ., 4, ., 3	0.5291	0.8844	0.8638	N/A	no
B5XCA1	KAD2_SALSA	2, ., 7, ., 4, ., 3	0.5384	0.8286	0.8739	N/A	no
O82514	KAD1_ARATH	2, ., 7, ., 4, ., 3	0.7967	0.9601	0.9796	yes	no
Q2UBH0	KAD1_ASPOR	2, ., 7, ., 4, ., 3	0.5291	0.8844	0.8604	yes	no
Q290A8	KAD2_DROPS	2, ., 7, ., 4, ., 3	0.5497	0.8406	0.8791	yes	no
P08166	KAD2_BOVIN	2, ., 7, ., 4, ., 3	0.5358	0.8326	0.8672	yes	no
B0XPW9	KAD1_ASPFC	2, ., 7, ., 4, ., 3	0.5336	0.8844	0.8638	N/A	no
Q74ZL1	KAD1_ASHGO	2, ., 7, ., 4, ., 3	0.5760	0.8406	0.7617	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.998
3rd Layer	2.7.4.3	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XII0928	adenylate kinase (EC-2.7.4.3) (246 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00400106	RecName- Full=Nucleoside diphosphate kinase; EC=2.7.4.6; (149 aa)						•	•		0.913
	gw1.X.1884.1	adenylosuccinate lyase (EC-4.3.2.2) (472 aa)						•	•		0.912
	gw1.XIII.2192.1	polyribonucleotide nucleotidyltransferase (EC-2.7.7.8) (853 aa)						•	•		0.912
	fgenesh4_pg.C_LG_XII000913	hypothetical protein (152 aa)						•	•		0.911
	gw1.II.1445.1	SubName- Full=Putative uncharacterized protein; (164 aa)						•	•		0.910
	estExt_fgenesh4_pg.C_1270057	adenine phosphoribosyltransferase (EC-2.4.2.7) (183 aa)						•	•		0.909
	fgenesh4_pm.C_LG_I000007	pyruvate kinase (EC-2.7.1.40) (493 aa)						•	•		0.909
	eugene3.00051017	ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (810 aa)						•	•		0.908
	fgenesh4_pm.C_LG_XIII000262	pyruvate kinase (EC-2.7.1.40) (500 aa)						•	•		0.908
	estExt_fgenesh4_pg.C_LG_III1798	pyruvate kinase (EC-2.7.1.40) (495 aa)						•	•		0.908

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
PLN02674	244	PLN02674, PLN02674, adenylate kinase	1e-177
PRK00279	215	PRK00279, adk, adenylate kinase; Reviewed	1e-109
pfam00406	186	pfam00406, ADK, Adenylate kinase	1e-105
TIGR01351	210	TIGR01351, adk, adenylate kinase	1e-105
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	4e-92
COG0563	178	COG0563, Adk, Adenylate kinase and related kinases	2e-59
PRK02496	184	PRK02496, adk, adenylate kinase; Provisional	9e-59
PRK14530	215	PRK14530, PRK14530, adenylate kinase; Provisional	8e-52
PRK14528	186	PRK14528, PRK14528, adenylate kinase; Provisional	1e-49
PRK14526	211	PRK14526, PRK14526, adenylate kinase; Provisional	4e-49
PRK14532	188	PRK14532, PRK14532, adenylate kinase; Provisional	4e-48
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	4e-46
PRK14531	183	PRK14531, PRK14531, adenylate kinase; Provisional	5e-46
PLN02842	505	PLN02842, PLN02842, nucleotide kinase	4e-45
PRK14527	191	PRK14527, PRK14527, adenylate kinase; Provisional	1e-37
TIGR01360	188	TIGR01360, aden_kin_iso1, adenylate kinase, isozym	4e-36
PTZ00088	229	PTZ00088, PTZ00088, adenylate kinase 1; Provisiona	5e-34
PRK14529	223	PRK14529, PRK14529, adenylate kinase; Provisional	3e-33
TIGR01359	183	TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family	3e-32
PLN02459	261	PLN02459, PLN02459, probable adenylate kinase	1e-31
PLN02200	234	PLN02200, PLN02200, adenylate kinase family protei	1e-20
pfam05191	36	pfam05191, ADK_lid, Adenylate kinase, active site	3e-18
pfam13207	114	pfam13207, AAA_17, AAA domain	2e-04
PRK09270	229	PRK09270, PRK09270, nucleoside triphosphate hydrol	0.002
TIGR02173	171	TIGR02173, cyt_kin_arch, cytidylate kinase, putati	0.004

>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase

 Score =  487 bits (1256), Expect = e-177
 Identities = 230/249 (92%), Positives = 240/249 (96%), Gaps = 5/249 (2%)

Query: 2   ASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61
           +S++AANLEDVPSVDLMTELLRRMKC+SKPDKRLILI     GPPGSGKGTQSPIIKDEY
Sbjct: 1   SSAAAANLEDVPSVDLMTELLRRMKCSSKPDKRLILI-----GPPGSGKGTQSPIIKDEY 55

Query: 62  CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILD 121
           CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILD
Sbjct: 56  CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILD 115

Query: 122 GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPP 181
           GFPRT VQAQKLDEML KQG K+DKVLNFAIDDA+LEERITGRWIHPSSGRTYHTKFAPP
Sbjct: 116 GFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPP 175

Query: 182 KVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEV 241
           KVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYY+KKG+VA LHAEKPP+EV
Sbjct: 176 KVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEV 235

Query: 242 TSEVQKALS 250
           T+EVQKALS
Sbjct: 236 TAEVQKALS 244

Length = 244

>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed

 Score =  313 bits (804), Expect = e-109
 Identities = 113/219 (51%), Positives = 150/219 (68%), Gaps = 5/219 (2%)

Query: 33  KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK 92
            RLIL+     GPPG+GKGTQ+  I ++Y + H++TGDMLRAAV A T LG +AK  MD 
Sbjct: 1   MRLILL-----GPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDA 55

Query: 93  GELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
           GELV D++V+G++ E + +P C+ GF+LDGFPRT  QA+ LDEML++ G K+D V+   +
Sbjct: 56  GELVPDEIVIGLVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDV 115

Query: 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 212
            D  L ER++GR I P+ GRTYH KF PPKV G  DV GE LIQR DD    ++ RLE +
Sbjct: 116 PDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVY 175

Query: 213 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           HKQT P+IDYY KKG + ++       EV +++ KAL  
Sbjct: 176 HKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214

Length = 215

>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase

 Score =  302 bits (775), Expect = e-105
 Identities = 113/187 (60%), Positives = 142/187 (75%), Gaps = 1/187 (0%)

Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           L GPPG+GKGTQ+  I  +Y + HL+TGD+LRA V + T LG +AKE MDKGELV D++V
Sbjct: 1   LLGPPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60

Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
           +G++ E +++  C+ GF+LDGFPRT  QA+ L+EMLE  G K+D V+ F + D VL ER+
Sbjct: 61  IGLVKERLEQNDCKNGFLLDGFPRTVPQAEALEEMLE-YGIKLDYVIEFDVPDEVLVERL 119

Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
           TGR IHP+SGR+YH +F PPKVPG DDVTGEPL QR DD    +K RLE +HKQTEPVID
Sbjct: 120 TGRRIHPNSGRSYHLEFNPPKVPGKDDVTGEPLSQRSDDNEETVKKRLETYHKQTEPVID 179

Query: 222 YYSKKGI 228
           YY KKG 
Sbjct: 180 YYKKKGK 186

Length = 186

>gnl|CDD|233369 TIGR01351, adk, adenylate kinase

 Score =  302 bits (777), Expect = e-105
 Identities = 114/218 (52%), Positives = 150/218 (68%), Gaps = 9/218 (4%)

Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
           RL+L+     GPPGSGKGTQ+  I ++Y L H++TGD+LRA + A TPLG KAKE M+KG
Sbjct: 1   RLVLL-----GPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKG 55

Query: 94  ELVSDDLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
           ELV D++V  ++ E + +    + GFILDGFPRT  QA+ LD +L++   K+D V+   +
Sbjct: 56  ELVPDEIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEALDALLKE---KIDAVIELDV 112

Query: 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 212
            D  L ER++GR I PS GR YH KF PPKVPG DD TGE LIQR+DDT  V+K RLE +
Sbjct: 113 PDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVY 172

Query: 213 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
            +QTEP+IDYY K+GI+ Q+    P  EV   + +AL 
Sbjct: 173 KEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEALK 210

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 210

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score =  269 bits (689), Expect = 4e-92
 Identities = 104/203 (51%), Positives = 135/203 (66%), Gaps = 9/203 (4%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
            + L GPPGSGKGTQ+  +  +Y L H++TGD+LR  +A+ T LG KAKE +D G+LV D
Sbjct: 1   RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPD 60

Query: 99  DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 158
           ++V+ ++ E +KKP C+KGFILDGFPRT  QA+ LDE+L++ G K DKV+   + D VL 
Sbjct: 61  EIVIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELLDE-GIKPDKVIELDVPDEVLI 119

Query: 159 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 218
           ERI GR I P SGR YH         G DDVTGEPL QR DD    +K RLE + +QT P
Sbjct: 120 ERILGRRICPVSGRVYHL--------GKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAP 171

Query: 219 VIDYYSKKGIVAQLHAEKPPQEV 241
           +IDYY KKG + ++       EV
Sbjct: 172 LIDYYKKKGKLVEIDGSGDIDEV 194

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]

 Score =  185 bits (472), Expect = 2e-59
 Identities = 76/218 (34%), Positives = 121/218 (55%), Gaps = 40/218 (18%)

Query: 33  KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK 92
            R++++     GPPG+GK T +  +  +  L HL TGD+LRAA+A +T LG + K+ +DK
Sbjct: 1   MRILIL-----GPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDK 55

Query: 93  GELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
           GELV D++V G++ E + +  C+ GFILDGFPRT  QA+ L  +L++ G ++D V+   +
Sbjct: 56  GELVPDEIVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDV 115

Query: 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 212
            + +L ER+ GR +                              R+DD    +K RL+ +
Sbjct: 116 PEELLLERLLGRRV------------------------------REDDNEETVKKRLKVY 145

Query: 213 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
           H+QT P+I+YYS       +      +EV +++ KALS
Sbjct: 146 HEQTAPLIEYYSVT-----IDGSGEIEEVLADILKALS 178

Length = 178

>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional

 Score =  184 bits (468), Expect = 9e-59
 Identities = 81/219 (36%), Positives = 125/219 (57%), Gaps = 36/219 (16%)

Query: 33  KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK 92
            RLI +     GPPG+GKGTQ+ ++ +   + H++TGD+LR A+  +TPLGIKA+  MDK
Sbjct: 2   TRLIFL-----GPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDK 56

Query: 93  GELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
           GELV D LV+ ++ E +++P    G+ILDGFPR   QA  LDE+L++ G+  ++V+N  +
Sbjct: 57  GELVPDQLVLDLVQERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDV 116

Query: 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 212
            D V+ ER+  R                                RKDDT  V++ RLE +
Sbjct: 117 PDDVVVERLLAR-------------------------------GRKDDTEEVIRRRLEVY 145

Query: 213 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
            +QT P+IDYY  +  +  +   +  + VT+E++ AL+ 
Sbjct: 146 REQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALAP 184

Length = 184

>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional

 Score =  167 bits (425), Expect = 8e-52
 Identities = 84/221 (38%), Positives = 125/221 (56%), Gaps = 22/221 (9%)

Query: 40  VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA---------AVAAKTPLGIKAKEAM 90
           + L G PG+GKGTQS  + +E+ + H+ TGD LRA              TP      E M
Sbjct: 6   ILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTP-----GEYM 60

Query: 91  DKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 150
           D GELV D +V  I++EA+   S   GF+LDG+PR   QA+ L+ + +     +D VL  
Sbjct: 61  DAGELVPDAVVNEIVEEAL---SDADGFVLDGYPRNLEQAEYLESITD-----LDVVLYL 112

Query: 151 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLE 210
            + +  L +R+TGR + P  G  YH +F  P+  GV D  G  LIQR DDT   ++ RL+
Sbjct: 113 DVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLD 172

Query: 211 AFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
            F + TEPVI++Y  +G++ ++  E+ P EV +++Q A+  
Sbjct: 173 VFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213

Length = 215

>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional

 Score =  160 bits (407), Expect = 1e-49
 Identities = 79/217 (36%), Positives = 126/217 (58%), Gaps = 32/217 (14%)

Query: 33  KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK 92
           K +I +     GPPG+GKGTQ+ I+ +   +  ++TGD+LR AV  +T +GI+AK  MD 
Sbjct: 2   KNIIFM-----GPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDA 56

Query: 93  GELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
           G+LV D +V+GII + +++  C+ GF+LDGFPRT  QA  LD +L+ +GK +DK +N  +
Sbjct: 57  GDLVPDSVVIGIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEV 116

Query: 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 212
            D  L +R+ GR                                R DD  A +K+RL+ +
Sbjct: 117 PDGELLKRLLGRAEIEG---------------------------RADDNEATIKNRLDNY 149

Query: 213 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
           +K+T P++D+Y+ +  ++Q++     +EVTS +QK L
Sbjct: 150 NKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKEL 186

Length = 186

>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional

 Score =  160 bits (406), Expect = 4e-49
 Identities = 77/207 (37%), Positives = 120/207 (57%), Gaps = 5/207 (2%)

Query: 44  GPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG 103
           GPPGSGKGT + I+ +E    H++TGD+ R  +   TPLG + K+ ++ G+LV D + + 
Sbjct: 7   GPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIK 66

Query: 104 IIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 163
           I+++ +        FILDGFPR   QA+ LD+ L        K++NF ID+ +L +R++G
Sbjct: 67  IVEDKINTIKNNDNFILDGFPRNINQAKALDKFLPNI-----KIINFLIDEELLIKRLSG 121

Query: 164 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYY 223
           R I  S    ++    P K  G+ DV    L QRKDD    LK+RL+ +  QT+P+I++Y
Sbjct: 122 RRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFY 181

Query: 224 SKKGIVAQLHAEKPPQEVTSEVQKALS 250
           SK   +  + A K   EV  ++ + +S
Sbjct: 182 SKCNRLNNIDASKDIDEVKKKLIEIIS 208

Length = 211

>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional

 Score =  157 bits (398), Expect = 4e-48
 Identities = 76/210 (36%), Positives = 116/210 (55%), Gaps = 27/210 (12%)

Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           L GPP +GKGTQ+  + +E  +  L+TGDMLRAA+A+ + LG + K  MD+GELVSD++V
Sbjct: 5   LFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIV 64

Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
           + +I+E + +     G I DGFPRT  QA+ LD+ML  +G+K+D V+   +DD  L ERI
Sbjct: 65  IALIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERI 124

Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
             R+     GR                          DD   V  +RL+A++ QT P++ 
Sbjct: 125 VKRF--EEQGRP-------------------------DDNPEVFVTRLDAYNAQTAPLLP 157

Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           YY+ +G + ++      + V + +  AL  
Sbjct: 158 YYAGQGKLTEVDGMGSIEAVAASIDAALEG 187

Length = 188

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score =  156 bits (395), Expect = 4e-46
 Identities = 89/218 (40%), Positives = 127/218 (58%), Gaps = 26/218 (11%)

Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
           RLIL+     GPPG+GKGTQ+  +  +Y +  L+TGDMLRAAVAA TP+G+KAK+ M  G
Sbjct: 2   RLILL-----GPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASG 56

Query: 94  ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 153
            LV D++VVGII + +++P    GFILDGFPRT  QA+ LD +L+ +  K+D V+   ++
Sbjct: 57  GLVPDEVVVGIISDRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVN 116

Query: 154 DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH 213
           +  L  R+  R +     R                  GE +  R DDT  VL  RL ++ 
Sbjct: 117 EGALLARVETR-VAEMRAR------------------GEEV--RADDTPEVLAKRLASYR 155

Query: 214 KQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
            QTEP++ YYS+K  +  +       EVT E+ + L+A
Sbjct: 156 AQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAA 193

Length = 333

>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional

 Score =  151 bits (383), Expect = 5e-46
 Identities = 74/207 (35%), Positives = 122/207 (58%), Gaps = 32/207 (15%)

Query: 44  GPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG 103
           GPPG+GKGTQ+  +   + L HL+TGD+LR+ VAA + LG +A+  M++GELVSD LV+ 
Sbjct: 9   GPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLA 68

Query: 104 IIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 163
           I++  +K  +   G++LDGFPRT  QA+ L+ +LE+  + ++ V+   +DDAVL ER+  
Sbjct: 69  IVESQLKALNSG-GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLA 127

Query: 164 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYY 223
           R                                R DD  AV+++RLE + ++T P+ID+Y
Sbjct: 128 R-------------------------------GRADDNEAVIRNRLEVYREKTAPLIDHY 156

Query: 224 SKKGIVAQLHAEKPPQEVTSEVQKALS 250
            ++G++  + A+   + +T  ++K L+
Sbjct: 157 RQRGLLQSVEAQGSIEAITERIEKVLA 183

Length = 183

>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase

 Score =  157 bits (399), Expect = 4e-45
 Identities = 73/210 (34%), Positives = 123/210 (58%), Gaps = 11/210 (5%)

Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           ++G P SGKGTQ  +I  ++ L H++TGD+LRA V+A T +G +AKE M+ G LV D++V
Sbjct: 2   ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIV 61

Query: 102 VGIIDEAMKKP-SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER 160
           + ++   + +  + +KG++LDG+PR+  QAQ L+++      + D  +   + D +L +R
Sbjct: 62  IAMVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEKL----KIRPDIFILLDVPDEILIDR 117

Query: 161 ITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVI 220
             GR + P +G+ YH K  PP+   +       LI R DDT   +K+RL+ + K  E ++
Sbjct: 118 CVGRRLDPVTGKIYHIKNFPPESEEIK----ARLITRPDDTEEKVKARLQIYKKNAEAIL 173

Query: 221 DYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
             YS   I+ ++   +P + V  E+   LS
Sbjct: 174 STYSD--IMVKIDGNRPKEVVFEEISSLLS 201

Length = 505

>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional

 Score =  130 bits (328), Expect = 1e-37
 Identities = 70/212 (33%), Positives = 107/212 (50%), Gaps = 28/212 (13%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           +V   GPPG+GKGTQ+  +  E  L  L+TGD+LR  VA  T LG +AK  M+ G+LV D
Sbjct: 8   VVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPD 67

Query: 99  DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 158
           +L++ +I + +      +  I DGFPRT  QA+ LD +LE+ G ++  V+   + D  L 
Sbjct: 68  ELILALIRDELAGMEPVR-VIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELI 126

Query: 159 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 218
            RI  R       R                        R DD    ++ R + + +QT+P
Sbjct: 127 RRIVER------AR---------------------QEGRSDDNEETVRRRQQVYREQTQP 159

Query: 219 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
           ++DYY  +G + ++     P EV + + KAL 
Sbjct: 160 LVDYYEARGHLKRVDGLGTPDEVYARILKALG 191

Length = 191

>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily

 Score =  126 bits (317), Expect = 4e-36
 Identities = 69/212 (32%), Positives = 108/212 (50%), Gaps = 32/212 (15%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           I+++ G PGSGKGTQ   I ++Y   HL+TGD+LRA VA+ +  G + +  M+ G+LV  
Sbjct: 5   IIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPL 64

Query: 99  DLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 157
           D V+ ++ +AM       KGF++DG+PR   Q ++     E++      VL F   +  +
Sbjct: 65  DTVLDLLKDAMVAALGTSKGFLIDGYPREVKQGEE----FERRIGPPTLVLYFDCSEDTM 120

Query: 158 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 217
            +R+  R    +SGR                          DD    +K RLE ++K TE
Sbjct: 121 VKRLLKR--AETSGRV-------------------------DDNEKTIKKRLETYYKATE 153

Query: 218 PVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
           PVI YY  KG + +++AE    +V  +V  A+
Sbjct: 154 PVIAYYETKGKLRKINAEGTVDDVFLQVCTAI 185

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188

>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional

 Score =  122 bits (307), Expect = 5e-34
 Identities = 61/199 (30%), Positives = 102/199 (51%), Gaps = 17/199 (8%)

Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           L G PG GKGT + I+  +  L H+  G++LR  + AKT +G + ++ +  G LV D+LV
Sbjct: 11  LFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLV 70

Query: 102 VGIIDEAMKKPS--CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
           + I+ + + K +  C KGFILDGFPR   Q ++L ++       +D  +N  +   +L +
Sbjct: 71  IAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKI-----TNIDLFVNIYLPRNILIK 125

Query: 160 RITGRWIHPSSGRTYHTKF-------APPKVPGVDDVT--GEP-LIQRKDDTAAVLKSRL 209
           ++ GR I  +  R ++           PP +P  D     G P L +R DDT  ++  RL
Sbjct: 126 KLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQKRSDDTEEIVAHRL 185

Query: 210 EAFHKQTEPVIDYYSKKGI 228
             +     P+I ++  +  
Sbjct: 186 NTYESTNSPIIQFFKNENC 204

Length = 229

>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional

 Score =  120 bits (302), Expect = 3e-33
 Identities = 55/121 (45%), Positives = 81/121 (66%), Gaps = 1/121 (0%)

Query: 44  GPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG 103
           GP GSGKGTQ  ++K +Y L H+ +G + R  +   T LG KAKE +D+G+LV DD+ + 
Sbjct: 7   GPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIP 66

Query: 104 IIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 163
           +I E +K+   + G++LDGFPR +VQA+KL E L+K+G K+D V+   +   V + RI G
Sbjct: 67  MILETLKQDG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMG 125

Query: 164 R 164
           R
Sbjct: 126 R 126

Length = 223

>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family

 Score =  115 bits (291), Expect = 3e-32
 Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 33/214 (15%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           +V++ G PGSGKGTQ   I + +   HL+ GD+LRA + + +  G   +  +  G++V  
Sbjct: 1   VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPS 60

Query: 99  DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVD--KVLNFAIDDAV 156
           ++ V ++  A++     K F++DGFPR E   + L+   +    KV+   VL F   + V
Sbjct: 61  EVTVKLLKNAIQA-DGSKKFLIDGFPRNE---ENLEAWEKLMDNKVNFKFVLFFDCPEEV 116

Query: 157 LEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQT 216
           + +R+  R    SSGR                          DD    +K R   +++QT
Sbjct: 117 MIKRLLKR--GQSSGRV-------------------------DDNIESIKKRFRTYNEQT 149

Query: 217 EPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
            PVI++Y  KG V +++AE   +EV  +V+K  +
Sbjct: 150 LPVIEHYENKGKVKEINAEGSVEEVFEDVEKIFA 183

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. Length = 183

>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase

 Score =  116 bits (292), Expect = 1e-31
 Identities = 64/197 (32%), Positives = 107/197 (54%), Gaps = 18/197 (9%)

Query: 44  GPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG 103
           G PG GKGT +  +     + H+ATGD++R  + +  PLG + KE +++G+LV D+++  
Sbjct: 36  GCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFS 95

Query: 104 IIDEAMKKPSCQ--KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
           ++ + ++    +   GFILDGFPRT  QA+ L+ + +     +D V+N  + + VL E+ 
Sbjct: 96  LLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTD-----IDLVVNLKLREEVLVEKC 150

Query: 162 TGRWIHPSSGRTY-----HTKFAPPKVPGVDDVTGEP------LIQRKDDTAAVLKSRLE 210
            GR I    G+ +       K    +   V      P      LI R DDT  V+K+RL 
Sbjct: 151 LGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKARLR 210

Query: 211 AFHKQTEPVIDYYSKKG 227
            + ++++PV D+Y K+G
Sbjct: 211 VYKEESQPVEDFYRKRG 227

Length = 261

>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein

 Score = 86.9 bits (215), Expect = 1e-20
 Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 34/235 (14%)

Query: 17  LMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 76
             TE++   +  S   ++   I   L GP GSGKGTQ   I + +   HL+ GD+LR  +
Sbjct: 24  FSTEIITLEERGSSSKEKTPFITFVLGGP-GSGKGTQCEKIVETFGFKHLSAGDLLRREI 82

Query: 77  AAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEM 136
           A+ +  G      + +G++V  ++ V +I + M+     K F++DGFPRTE      + +
Sbjct: 83  ASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSDNNK-FLIDGFPRTEENRIAFERI 141

Query: 137 LEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQ 196
           +   G + + VL F       EE +  R ++ + GR                        
Sbjct: 142 I---GAEPNVVLFFDCP----EEEMVKRVLNRNQGRV----------------------- 171

Query: 197 RKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
             DD    +K RL+ F+    PVIDYYSKKG +  ++A     E+  +V+   +A
Sbjct: 172 --DDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAA 224

Length = 234

>gnl|CDD|218488 pfam05191, ADK_lid, Adenylate kinase, active site lid

 Score = 74.9 bits (185), Expect = 3e-18
 Identities = 21/36 (58%), Positives = 23/36 (63%)

Query: 164 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD 199
           R + PS GR YH KF PPKV GV D  G  L+QR D
Sbjct: 1   RRVCPSCGRIYHVKFNPPKVEGVCDKCGGELVQRDD 36

Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain, is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function. Length = 36

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 16/126 (12%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           I+ + GPPGSGK T +  + ++  +  ++  D+LR           +    +D GEL   
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLRE----------EGLAELDDGELDDI 50

Query: 99  DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 158
           D+ + +++E + +   ++ +++DG   +      L+  LE+    V   L        L 
Sbjct: 51  DIDLELLEEILDEL-AKQEWVIDGVRES-----TLELRLEEADLVVFLDLPLPACRFRLL 104

Query: 159 ERITGR 164
           +R   R
Sbjct: 105 KRRLQR 110

Length = 114

>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)

Query: 16 DLMTELLRRM-KCASKPDKRLILIIVWLAGPPGSGKGT 52
           +   LLRR+    ++P +R    IV +AGPPG+GK T
Sbjct: 14 AVHKPLLRRLAALQAEPQRR---TIVGIAGPPGAGKST 48

Length = 229

>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 9/54 (16%)

Query: 38 IIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD 91
          +I+ ++GPPGSGK T + I+ ++  L  ++ GD+ R          + AK  +D
Sbjct: 1  MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFR---------ELAAKMGLD 45

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
PLN02674	244	adenylate kinase	100.0
PLN02459	261	probable adenylate kinase	100.0
PRK14526	211	adenylate kinase; Provisional	100.0
PRK00279	215	adk adenylate kinase; Reviewed	100.0
PRK14529	223	adenylate kinase; Provisional	100.0
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	100.0
PTZ00088	229	adenylate kinase 1; Provisional	100.0
PRK14530	215	adenylate kinase; Provisional	100.0
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	100.0
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	100.0
PRK13808	333	adenylate kinase; Provisional	100.0
PRK14528	186	adenylate kinase; Provisional	100.0
PRK14532	188	adenylate kinase; Provisional	100.0
PRK14531	183	adenylate kinase; Provisional	100.0
PLN02842	505	nucleotide kinase	100.0
PRK14527	191	adenylate kinase; Provisional	100.0
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	100.0
PRK02496	184	adk adenylate kinase; Provisional	100.0
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	100.0
PLN02200	234	adenylate kinase family protein	99.98
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.97
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.97
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.96
PRK13974	212	thymidylate kinase; Provisional	99.75
PRK01184	184	hypothetical protein; Provisional	99.75
PRK03839	180	putative kinase; Provisional	99.74
PRK13973	213	thymidylate kinase; Provisional	99.71
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.68
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.67
PRK06217	183	hypothetical protein; Validated	99.67
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.66
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.65
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.65
PRK13949	169	shikimate kinase; Provisional	99.65
PRK13975	196	thymidylate kinase; Provisional	99.63
PRK08356	195	hypothetical protein; Provisional	99.63
PLN02924	220	thymidylate kinase	99.61
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.6
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	99.59
PRK03731	171	aroL shikimate kinase II; Reviewed	99.59
PRK13948	182	shikimate kinase; Provisional	99.59
PRK08233	182	hypothetical protein; Provisional	99.58
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.58
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.58
PRK00625	173	shikimate kinase; Provisional	99.57
PLN02422	232	dephospho-CoA kinase	99.57
PRK13947	171	shikimate kinase; Provisional	99.57
PHA02530	300	pseT polynucleotide kinase; Provisional	99.57
PRK00698	205	tmk thymidylate kinase; Validated	99.57
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.56
PRK05057	172	aroK shikimate kinase I; Reviewed	99.56
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.56
PRK00131	175	aroK shikimate kinase; Reviewed	99.55
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.55
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.55
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.54
PTZ00451	244	dephospho-CoA kinase; Provisional	99.53
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	99.53
PRK04040	188	adenylate kinase; Provisional	99.53
PRK07933	213	thymidylate kinase; Validated	99.52
PRK13946	184	shikimate kinase; Provisional	99.52
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.51
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.51
PRK04182	180	cytidylate kinase; Provisional	99.5
PLN02199	303	shikimate kinase	99.49
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.48
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.48
PRK08118	167	topology modulation protein; Reviewed	99.48
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.47
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.47
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.45
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	99.44
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.44
PRK13976	209	thymidylate kinase; Provisional	99.44
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.43
PRK06762	166	hypothetical protein; Provisional	99.43
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.42
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.41
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.4
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.4
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	99.37
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.36
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.34
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.32
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.32
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.3
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.29
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.26
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.25
PRK07261	171	topology modulation protein; Provisional	99.23
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.23
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.22
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	99.21
PRK14738	206	gmk guanylate kinase; Provisional	99.2
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.2
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.16
PRK09825	176	idnK D-gluconate kinase; Provisional	99.16
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.14
PRK05480	209	uridine/cytidine kinase; Provisional	99.14
PRK00023	225	cmk cytidylate kinase; Provisional	99.12
PRK06547	172	hypothetical protein; Provisional	99.12
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.11
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	99.07
PRK11545	163	gntK gluconate kinase 1; Provisional	99.07
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.06
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	99.06
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.06
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.04
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.03
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	99.02
PRK06696	223	uridine kinase; Validated	99.02
PRK05541	176	adenylylsulfate kinase; Provisional	99.02
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.02
PRK00300	205	gmk guanylate kinase; Provisional	99.0
PRK14737	186	gmk guanylate kinase; Provisional	98.99
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.98
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.98
PRK12338	319	hypothetical protein; Provisional	98.97
PHA03132	580	thymidine kinase; Provisional	98.97
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.96
PRK07667	193	uridine kinase; Provisional	98.91
PRK00889	175	adenylylsulfate kinase; Provisional	98.9
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.89
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.89
PTZ00301	210	uridine kinase; Provisional	98.88
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.88
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.87
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.84
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.83
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.81
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	98.8
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.8
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.79
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	98.78
KOG3308	225	consensus Uncharacterized protein of the uridine k	98.76
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	98.75
PRK03846	198	adenylylsulfate kinase; Provisional	98.73
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.73
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.71
COG0645	170	Predicted kinase [General function prediction only	98.7
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.66
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.66
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.66
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.66
PLN02348	395	phosphoribulokinase	98.65
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.64
PRK07429	327	phosphoribulokinase; Provisional	98.63
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.61
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.59
COG4639	168	Predicted kinase [General function prediction only	98.57
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.54
COG1660	286	Predicted P-loop-containing kinase [General functi	98.54
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.53
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.5
PRK05439	311	pantothenate kinase; Provisional	98.46
PHA00729	226	NTP-binding motif containing protein	98.44
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.4
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.4
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	98.33
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	98.33
PLN02772	398	guanylate kinase	98.3
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.21
PLN02318	656	phosphoribulokinase/uridine kinase	98.15
COG3709	192	Uncharacterized component of phosphonate metabolis	98.05
PHA03136	378	thymidine kinase; Provisional	98.04
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	97.97
PRK15453	290	phosphoribulokinase; Provisional	97.94
PF00004	132	AAA: ATPase family associated with various cellula	97.88
PF05191	36	ADK_lid: Adenylate kinase, active site lid; InterP	97.86
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	97.84
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	97.81
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	97.78
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	97.78
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.78
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	97.77
PLN02165	334	adenylate isopentenyltransferase	97.77
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.76
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.76
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	97.74
PF13173	128	AAA_14: AAA domain	97.71
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.7
PRK09169	2316	hypothetical protein; Validated	97.69
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	97.68
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.67
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	97.66
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.65
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.64
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.64
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.58
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.57
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.57
PRK06761	282	hypothetical protein; Provisional	97.56
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.55
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.55
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	97.53
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.53
CHL00181	287	cbbX CbbX; Provisional	97.52
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.51
PHA03134	340	thymidine kinase; Provisional	97.49
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.48
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.48
PLN02840	421	tRNA dimethylallyltransferase	97.47
smart00382	148	AAA ATPases associated with a variety of cellular	97.45
PRK12377	248	putative replication protein; Provisional	97.45
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.44
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.43
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	97.43
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	97.4
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.36
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.36
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	97.33
PRK06526	254	transposase; Provisional	97.32
PHA03135	343	thymidine kinase; Provisional	97.31
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.31
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.31
PLN02748	468	tRNA dimethylallyltransferase	97.29
PF05729	166	NACHT: NACHT domain	97.27
KOG3062	281	consensus RNA polymerase II elongator associated p	97.25
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.24
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.23
PLN02796	347	D-glycerate 3-kinase	97.23
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.22
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.22
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.19
CHL00195	489	ycf46 Ycf46; Provisional	97.14
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.14
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.13
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.13
TIGR01223	182	Pmev_kin_anim phosphomevalonate kinase, animal typ	97.12
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.12
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.09
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.08
COG1855	604	ATPase (PilT family) [General function prediction	97.08
PRK10646	153	ADP-binding protein; Provisional	97.07
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	97.07
PLN03046	460	D-glycerate 3-kinase; Provisional	97.05
PF13245	76	AAA_19: Part of AAA domain	97.04
PF01712	146	dNK: Deoxynucleoside kinase; InterPro: IPR002624 T	97.04
COG0802	149	Predicted ATPase or kinase [General function predi	97.04
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.03
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.03
PRK04195	482	replication factor C large subunit; Provisional	97.03
PHA02244	383	ATPase-like protein	97.02
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.02
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.0
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.99
PRK08116	268	hypothetical protein; Validated	96.99
PRK09087	226	hypothetical protein; Validated	96.98
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	96.98
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.98
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.97
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.97
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	96.97
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	96.96
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.95
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.95
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	96.95
COG4240	300	Predicted kinase [General function prediction only	96.93
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	96.93
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.92
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	96.92
COG3911	183	Predicted ATPase [General function prediction only	96.92
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.92
KOG4622	291	consensus Predicted nucleotide kinase [General fun	96.91
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	96.9
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.88
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	96.88
PF07726	131	AAA_3: ATPase family associated with various cellu	96.85
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.85
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	96.85
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.84
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	96.84
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	96.83
PRK06620	214	hypothetical protein; Validated	96.83
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.82
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.82
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.82
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	96.82
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	96.8
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.8
KOG1969	877	consensus DNA replication checkpoint protein CHL12	96.79
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	96.79
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	96.79
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.78
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.78
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	96.78
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	96.74
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.74
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.74
PRK08181	269	transposase; Validated	96.72
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	96.72
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.72
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.72
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.69
KOG0736	953	consensus Peroxisome assembly factor 2 containing	96.69
CHL00176	638	ftsH cell division protein; Validated	96.69
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	96.67
PHA03138	340	thymidine kinase; Provisional	96.66
PRK13342	413	recombination factor protein RarA; Reviewed	96.65
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.65
CHL00206	2281	ycf2 Ycf2; Provisional	96.65
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.63
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	96.62
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	96.61
PRK13695	174	putative NTPase; Provisional	96.6
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.6
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.59
PHA03133	368	thymidine kinase; Provisional	96.59
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.59
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.58
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.58
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	96.58
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.55
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.55
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.55
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.54
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.54
PRK06893	229	DNA replication initiation factor; Validated	96.54
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	96.54
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.52
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.51
PLN03025	319	replication factor C subunit; Provisional	96.51
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.51
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	96.5
PRK08084	235	DNA replication initiation factor; Provisional	96.49
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.49
cd03116	159	MobB Molybdenum is an essential trace element in t	96.48
PHA02544	316	44 clamp loader, small subunit; Provisional	96.48
PHA02624	647	large T antigen; Provisional	96.46
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.46
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.45
PRK04296	190	thymidine kinase; Provisional	96.45
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	96.45
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.45
PRK12402	337	replication factor C small subunit 2; Reviewed	96.44
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.44
PRK06921	266	hypothetical protein; Provisional	96.44
KOG1534	273	consensus Putative transcription factor FET5 [Tran	96.44
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	96.43
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	96.41
PRK10416	318	signal recognition particle-docking protein FtsY;	96.4
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.39
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.39
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.39
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	96.38
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.37
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	96.36
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	96.36
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.36
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.36
PRK07952	244	DNA replication protein DnaC; Validated	96.36
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.36
PRK00149	450	dnaA chromosomal replication initiation protein; R	96.36
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.35
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.34
COG4525	259	TauB ABC-type taurine transport system, ATPase com	96.34
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	96.33
PRK14088	440	dnaA chromosomal replication initiation protein; P	96.33
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	96.32
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	96.32
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.31
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	96.31
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.3
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.3
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	96.3
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.3
COG0714	329	MoxR-like ATPases [General function prediction onl	96.29
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.29
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.29
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.28
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	96.28
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	96.27
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	96.27
PRK15455	644	PrkA family serine protein kinase; Provisional	96.27
PF00693	281	Herpes_TK: Thymidine kinase from herpesvirus; Inte	96.26
PRK14974	336	cell division protein FtsY; Provisional	96.25
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	96.24
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.24
PRK04328	249	hypothetical protein; Provisional	96.24
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	96.23
PRK09183	259	transposase/IS protein; Provisional	96.22
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	96.22
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	96.22
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	96.2
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	96.2
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.2
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.19
PRK14086	617	dnaA chromosomal replication initiation protein; P	96.19
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.19
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.18
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	96.18
PRK08939	306	primosomal protein DnaI; Reviewed	96.17
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	96.17
PRK13341	725	recombination factor protein RarA/unknown domain f	96.17
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	96.17
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.17
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.16
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	96.16
PRK06835	329	DNA replication protein DnaC; Validated	96.16
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.15
cd03114	148	ArgK-like The function of this protein family is u	96.14
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	96.14
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	96.14
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	96.13
KOG2028	554	consensus ATPase related to the helicase subunit o	96.13
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.12
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.12
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	96.12
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.1
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.1
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.1
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.08
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.07
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	96.06
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.04
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	96.04
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.03
KOG1533	290	consensus Predicted GTPase [General function predi	96.03
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.03
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.02
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	96.02
COG1484	254	DnaC DNA replication protein [DNA replication, rec	96.01
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.01
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.01
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.01
cd03269	210	ABC_putative_ATPase This subfamily is involved in	95.99
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	95.98
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	95.98
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	95.98
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.97
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.97
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	95.97
PRK06067	234	flagellar accessory protein FlaH; Validated	95.97
PRK13768	253	GTPase; Provisional	95.97
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	95.96
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	95.96
PRK06851	367	hypothetical protein; Provisional	95.95
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.95
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.95
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.95
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.94
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	95.94
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	95.94
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	95.93
PRK10867	433	signal recognition particle protein; Provisional	95.93
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.93
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.93
PRK13531	498	regulatory ATPase RavA; Provisional	95.93
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.91
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	95.91
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	95.91
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.9
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.9
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	95.9
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	95.9
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.89
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.89
cd03246	173	ABCC_Protease_Secretion This family represents the	95.89
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	95.89
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.88
cd03215	182	ABC_Carb_Monos_II This family represents domain II	95.88
cd03216	163	ABC_Carb_Monos_I This family represents the domain	95.88
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	95.88
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	95.87
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	95.87
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	95.87
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.86
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	95.86
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	95.86
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.86
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	95.86
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	95.86
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	95.85
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	95.85
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.85
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	95.85
COG2884	223	FtsE Predicted ATPase involved in cell division [C	95.84
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	95.84
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	95.84
PRK13851	344	type IV secretion system protein VirB11; Provision	95.84
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	95.84
PRK07940	394	DNA polymerase III subunit delta'; Validated	95.84
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	95.82
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	95.82
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.81
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	95.8
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	95.8
cd02034	116	CooC The accessory protein CooC, which contains a	95.8
TIGR00959	428	ffh signal recognition particle protein. This mode	95.8
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	95.8
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	95.79
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.79
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	95.79
PRK00440	319	rfc replication factor C small subunit; Reviewed	95.79
PF13479	213	AAA_24: AAA domain	95.79
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	95.78
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.78
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	95.77
cd01128	249	rho_factor Transcription termination factor rho is	95.77
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	95.77

>PLN02674 adenylate kinase

Probab=100.00  E-value=1.7e-47  Score=313.94  Aligned_cols=243  Identities=95%  Similarity=1.397  Sum_probs=231.0

Q ss_pred             cccccccCCCCchhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCch
Q 025529            3 SSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPL   82 (251)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~   82 (251)
                      |..+.|+++.|..|++.++.+.+.+..+++++|+++     |||||||+|+|+.|+++||++|+++++++|.++..++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~-----G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~   76 (244)
T PLN02674          2 SAAAANLEDVPSVDLMTELLRRMKCSSKPDKRLILI-----GPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPL   76 (244)
T ss_pred             cccccccccCchHHHHHHHHHHHhhccccCceEEEE-----CCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChh
Confidence            456778999999999999999887666667899999     999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529           83 GIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT  162 (251)
Q Consensus        83 ~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~  162 (251)
                      |..+++++..|..+|++++..++.+++...++.+|||+||||++..|+..|...+...+..++.+|+|++|++++.+|+.
T Consensus        77 g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~  156 (244)
T PLN02674         77 GIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERIT  156 (244)
T ss_pred             hHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHh
Confidence            99999999999999999999999999988877789999999999999999998887778889999999999999999999


Q ss_pred             cCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHH
Q 025529          163 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVT  242 (251)
Q Consensus       163 ~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~  242 (251)
                      .|+.|+.||+.||..+.||..++.|+.|++++.+|.+|+++.+++|+..|++...++.+||.+.+.++.|||+.++++|+
T Consensus       157 gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~  236 (244)
T PLN02674        157 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVT  236 (244)
T ss_pred             ccccccccCCccccccCCCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 025529          243 SEVQKALS  250 (251)
Q Consensus       243 ~~i~~~l~  250 (251)
                      +.|.+.|+
T Consensus       237 ~~i~~~l~  244 (244)
T PLN02674        237 AEVQKALS  244 (244)
T ss_pred             HHHHHHhC
Confidence            99998874

>PLN02459 probable adenylate kinase

Probab=100.00  E-value=4.1e-40  Score=271.29  Aligned_cols=225  Identities=31%  Similarity=0.563  Sum_probs=199.3

Q ss_pred             chhHHHHHHHHhhccC--CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHH
Q 025529           14 SVDLMTELLRRMKCAS--KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD   91 (251)
Q Consensus        14 ~~~~~~~~~~~~~~~~--~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~   91 (251)
                      +.++.+.+...-...+  .++|+|+|+     |||||||||+|+.|++.||+.|+++++++|+++...+++|..+++++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~ii~~-----G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~   83 (261)
T PLN02459          9 TSALADDLASACDRSLAKGRNVNWVFL-----GCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVN   83 (261)
T ss_pred             cccchhhccccccCCccccCccEEEEE-----CCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHH
Confidence            3444444444443333  356889999     999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCHHHHHHHHHHHHcCC--CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025529           92 KGELVSDDLVVGIIDEAMKKP--SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS  169 (251)
Q Consensus        92 ~~~~~~~~~~~~ll~~~l~~~--~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~  169 (251)
                      +|..+|++++..++..++...  ...+|||+||||++..|+..|...     ..++.+|+|++|++++++|+.+|+.|+.
T Consensus        84 ~G~lVPdeiv~~ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~-----~~id~Vi~L~v~d~~l~~Rl~gR~~~~~  158 (261)
T PLN02459         84 QGKLVPDEIIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGV-----TDIDLVVNLKLREEVLVEKCLGRRICSE  158 (261)
T ss_pred             cCCccCHHHHHHHHHHHHhcccccCCceEEEeCCCCCHHHHHHHHhc-----CCCCEEEEEECCHHHHHHHhhccccccc
Confidence            999999999999999999765  345799999999999999988764     3579999999999999999999999999


Q ss_pred             CCceecccC-------------CCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCC
Q 025529          170 SGRTYHTKF-------------APPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK  236 (251)
Q Consensus       170 ~~~~~~~~~-------------~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~  236 (251)
                      ||+.||..+             +||..+.  +.|++++..|.+|+++.+++|+..|++...++.+||.+.+.++.||+++
T Consensus       159 ~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~  236 (261)
T PLN02459        159 CGKNFNVADIDLKGEDGRPGIVMPPLLPP--PECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPG  236 (261)
T ss_pred             cCccccccccccccccccccccCCCCCCC--cccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCC
Confidence            999999863             6665543  5688999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHhc
Q 025529          237 PPQEVTSEVQKALS  250 (251)
Q Consensus       237 ~~eev~~~i~~~l~  250 (251)
                      ++++|++.|.++|+
T Consensus       237 ~~~eV~~~i~~~l~  250 (261)
T PLN02459        237 GIPETWPRLLQALN  250 (261)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999999874

>PRK14526 adenylate kinase; Provisional

Probab=100.00  E-value=5.5e-40  Score=265.96  Aligned_cols=209  Identities=37%  Similarity=0.655  Sum_probs=195.9

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+|+     |+|||||||+++.|++.+++.++++++++++.+...++.|..+++++.+|..+|++++..++.+.+...
T Consensus         1 m~i~l~-----G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~   75 (211)
T PRK14526          1 MKLVFL-----GPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTI   75 (211)
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcc
Confidence            467888     999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      .+.++||+||||++..|+..|...+     ....+|+|++|++++.+|+.+|+.|+.||+.||..++||..++.|+.|++
T Consensus        76 ~~~~g~ilDGfPR~~~Qa~~l~~~~-----~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~  150 (211)
T PRK14526         76 KNNDNFILDGFPRNINQAKALDKFL-----PNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKG  150 (211)
T ss_pred             cccCcEEEECCCCCHHHHHHHHHhc-----CCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCC
Confidence            7778999999999999999887642     12467889999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA  251 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~  251 (251)
                      ++..|.+|+++.+++|+..|++...++.+||...+.++.|||+.++++|+++|.+.|++
T Consensus       151 ~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~  209 (211)
T PRK14526        151 DLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK  209 (211)
T ss_pred             eeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            99999999999999999999999999999999989999999999999999999998863

>PRK00279 adk adenylate kinase; Reviewed

Probab=100.00  E-value=1.8e-39  Score=265.19  Aligned_cols=214  Identities=53%  Similarity=0.898  Sum_probs=202.6

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+++     |+|||||||+|+.|+++||+.++++++++++.+...++.|..+++++.+|..+|++++..++.+.+...
T Consensus         1 ~~I~v~-----G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~   75 (215)
T PRK00279          1 MRLILL-----GPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQP   75 (215)
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc
Confidence            467888     999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      ++..+||+||||++..|+..|.+.+...+..++.+|+|++|.+++.+|+..|..|+.||+.|+..++||..++.++.|++
T Consensus        76 ~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~  155 (215)
T PRK00279         76 DCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGE  155 (215)
T ss_pred             CccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCC
Confidence            66679999999999999999988877777788999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA  251 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~  251 (251)
                      ++..|.+|+++.+++|+..|+..+.++.+||...+.++.|||+.++++|++.|...|.+
T Consensus       156 ~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (215)
T PRK00279        156 ELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK  214 (215)
T ss_pred             cccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999988999999999999999999998863

>PRK14529 adenylate kinase; Provisional

Probab=100.00  E-value=1.2e-39  Score=264.72  Aligned_cols=212  Identities=34%  Similarity=0.571  Sum_probs=192.8

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+|+     |||||||||+|+.|+++|+++++++++++++.+..++++|..+++++.+|..+|++++..++.+++...
T Consensus         1 m~I~l~-----G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~   75 (223)
T PRK14529          1 MNILIF-----GPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQD   75 (223)
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhcc
Confidence            578888     999999999999999999999999999999999889999999999999999999999999999999877


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCC-CCCCC-CCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFA-PPKVP-GVDDVT  190 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~-~p~~~-~~~~~~  190 (251)
                      + .+|||+||||++..|+..|...+...+..|+++|+|++|++++.+|+..|+.|+.||..|+..+. ||..+ +.|+.|
T Consensus        76 ~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~  154 (223)
T PRK14529         76 G-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVC  154 (223)
T ss_pred             C-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCc
Confidence            6 78999999999999999999888777788999999999999999999999999988877666554 45444 488999


Q ss_pred             CCCcccCCCCc-HHHHHHHHHHHHhc---cHHHHHHHhh-----CCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          191 GEPLIQRKDDT-AAVLKSRLEAFHKQ---TEPVIDYYSK-----KGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       191 ~~~~~~r~~~~-~~~~~~r~~~y~~~---~~~~~~~~~~-----~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                      ++++.+|.+|+ ++.+++|+..|++.   ..++.+||.+     .+.++.|||++++++|++.|.+.|+
T Consensus       155 ~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l~  223 (223)
T PRK14529        155 GGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQLS  223 (223)
T ss_pred             CCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence            99999999996 78999999999997   4578899996     6889999999999999999998874

>TIGR01351 adk adenylate kinases

Probab=100.00  E-value=1.4e-38  Score=259.02  Aligned_cols=207  Identities=55%  Similarity=0.917  Sum_probs=193.3

Q ss_pred             EEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC-
Q 025529           35 LILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-  113 (251)
Q Consensus        35 i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~-  113 (251)
                      |+++     |||||||||+|+.|+++||++++++++++++.+...++.|..+++++.+|..+|++++..++..++.... 
T Consensus         2 I~i~-----G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~   76 (210)
T TIGR01351         2 LVLL-----GPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD   76 (210)
T ss_pred             EEEE-----CCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc
Confidence            6677     9999999999999999999999999999999999899999999999999999999999999999998743 


Q ss_pred             CCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCC
Q 025529          114 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP  193 (251)
Q Consensus       114 ~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  193 (251)
                      ...+||+||||++..|+..|.+.+.   ..++.+|+|++|++++.+|+..|+.|+.||+.|+..+.||..++.|+.|+++
T Consensus        77 ~~~~~ilDGfPrt~~Qa~~l~~~~~---~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~  153 (210)
T TIGR01351        77 NENGFILDGFPRTLSQAEALDALLK---EKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGEL  153 (210)
T ss_pred             cCCcEEEeCCCCCHHHHHHHHHHhc---cCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCc
Confidence            4579999999999999998887642   1589999999999999999999999999999999999999888888889999


Q ss_pred             cccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          194 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       194 ~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                      +..|.+|+++.+++|+..|++...++.+||.+.+.++.|||+.++++|++.|.+.|
T Consensus       154 l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  209 (210)
T TIGR01351       154 LIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL  209 (210)
T ss_pred             cccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence            99999999999999999999999999999999899999999999999999999876

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PTZ00088 adenylate kinase 1; Provisional

Probab=100.00  E-value=1.9e-37  Score=253.85  Aligned_cols=210  Identities=29%  Similarity=0.576  Sum_probs=190.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM  109 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l  109 (251)
                      ..+|+|+++     |||||||||+|+.|+++||++++++++++++++...+++|..+++++.+|..+|++++..++.+.+
T Consensus         4 ~~~mrIvl~-----G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l   78 (229)
T PTZ00088          4 KGPLKIVLF-----GAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEI   78 (229)
T ss_pred             CCCceEEEE-----CCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHH
Confidence            467889999     999999999999999999999999999999999988999999999999999999999999999998


Q ss_pred             cC--CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccC-------CC
Q 025529          110 KK--PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKF-------AP  180 (251)
Q Consensus       110 ~~--~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~-------~~  180 (251)
                      ..  .....+||+||||++..|+..|.+.     ..++++|+|++|.+++++|+..|+.|+.||+.||..+       .|
T Consensus        79 ~~~~~~~~~g~iLDGfPRt~~Qa~~l~~~-----~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~p  153 (229)
T PTZ00088         79 AKVTDDCFKGFILDGFPRNLKQCKELGKI-----TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMP  153 (229)
T ss_pred             HhhccccCceEEEecCCCCHHHHHHHHhc-----CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCC
Confidence            77  4456799999999999999987653     4689999999999999999999999999999999974       34


Q ss_pred             CCC-CCCCCCCC--CCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCc-EEEE---cCCCChhHHHHHHHHHh
Q 025529          181 PKV-PGVDDVTG--EPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGI-VAQL---HAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       181 p~~-~~~~~~~~--~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~-~~~i---d~~~~~eev~~~i~~~l  249 (251)
                      |.. ++.|+.|+  +++..|.+|+++.+++|+..|++...++.+||.+.|. ++.|   |+++++++|++.|.+.+
T Consensus       154 p~~~~~~c~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~  229 (229)
T PTZ00088        154 PILPPADCEGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQRL  229 (229)
T ss_pred             CCCCCCcccccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhhC
Confidence            433 46778888  4788999999999999999999999999999999999 9888   79999999999998754

>PRK14530 adenylate kinase; Provisional

Probab=100.00  E-value=1.3e-35  Score=242.41  Aligned_cols=206  Identities=40%  Similarity=0.728  Sum_probs=185.5

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHH-----HcCCchHHHHHHHHHcCCCcCHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV-----AAKTPLGIKAKEAMDKGELVSDDLVVGIID  106 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~  106 (251)
                      +++|+|+     |+|||||||+|+.|+++||++|++++++++...     ...+..+. .++.+..|..+|+.....++.
T Consensus         3 ~~~I~i~-----G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~   76 (215)
T PRK14530          3 QPRILLL-----GAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVE   76 (215)
T ss_pred             CCEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHH
Confidence            3478889     999999999999999999999999999999876     23344554 677888999999999999888


Q ss_pred             HHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCC
Q 025529          107 EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGV  186 (251)
Q Consensus       107 ~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~  186 (251)
                      ..+..   ..+||+||||++..|+..|...     ..++.+|+|++|.+++.+|+..|+.++.+|+.|+..+.||..++.
T Consensus        77 ~~l~~---~~~~IldG~pr~~~q~~~l~~~-----~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~  148 (215)
T PRK14530         77 EALSD---ADGFVLDGYPRNLEQAEYLESI-----TDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGV  148 (215)
T ss_pred             HHHhc---CCCEEEcCCCCCHHHHHHHHHh-----cCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCccccc
Confidence            77644   3589999999999998877654     357999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529          187 DDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA  251 (251)
Q Consensus       187 ~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~  251 (251)
                      ++.|++++..|.+|.++.+++|+..|++.+.++.+||.+.+.++.|||+.++++|++.|...|.+
T Consensus       149 ~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  213 (215)
T PRK14530        149 CDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD  213 (215)
T ss_pred             CcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999988999999999999999999998863

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=4.3e-34  Score=219.24  Aligned_cols=187  Identities=34%  Similarity=0.597  Sum_probs=171.1

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHc-CCchHHHHHHHHHcCCCcCHHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDE  107 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~ll~~  107 (251)
                      +..++.|.++     |+|||||-|+|..++++|++.|+|+++|+|++... +++.|..+++++.+|..+|.++...+++.
T Consensus         5 ~~~~~IifVl-----GGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~   79 (195)
T KOG3079|consen    5 LDKPPIIFVL-----GGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEE   79 (195)
T ss_pred             ccCCCEEEEE-----cCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHH
Confidence            3456777788     99999999999999999999999999999999987 99999999999999999999999999999


Q ss_pred             HHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCC
Q 025529          108 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVD  187 (251)
Q Consensus       108 ~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~  187 (251)
                      .+......++|+|||||+...|...|+..+.   ..+++++|++|+.|++.+|+..|...                    
T Consensus        80 am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~---~~~~fvl~fdc~ee~~l~Rll~R~q~--------------------  136 (195)
T KOG3079|consen   80 AMRSSGDSNGFLIDGYPRNVDQLVEFERKIQ---GDPDFVLFFDCPEETMLKRLLHRGQS--------------------  136 (195)
T ss_pred             HHHhcCCCCeEEecCCCCChHHHHHHHHHhc---CCCCEEEEEeCCHHHHHHHHHhhccc--------------------
Confidence            9988776677999999999999999998753   26899999999999999999998521                    


Q ss_pred             CCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          188 DVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       188 ~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                             ..|.+|+.+.+++|+.-|++...++++||++.|+++.||++.++++|+++|.+.|.
T Consensus       137 -------~~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id  192 (195)
T KOG3079|consen  137 -------NSRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAID  192 (195)
T ss_pred             -------CCCCCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhh
Confidence                   12679999999999999999999999999999999999999999999999998874

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.4e-34  Score=232.59  Aligned_cols=211  Identities=53%  Similarity=0.927  Sum_probs=198.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM  109 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l  109 (251)
                      .++.+++++     |+||+||+|+|..+++.|++.|+++++++|..+...++.|..+++++..|+.+|++++..++...+
T Consensus        13 ~~~~~~v~~-----G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l   87 (235)
T KOG3078|consen   13 KKGVRAVLL-----GAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRL   87 (235)
T ss_pred             ccceEEEEE-----eCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhc
Confidence            368899999     999999999999999999999999999999999999999999999999999999999999777777


Q ss_pred             cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCC
Q 025529          110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV  189 (251)
Q Consensus       110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~  189 (251)
                      ....+.++|++||||++..|...+.    .++..+|.+|.|.+|.+.+.+|+..|+.|+.+|+.||..|+||..++.++.
T Consensus        88 ~~~~~~~~~ildg~Prt~~qa~~l~----~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDi  163 (235)
T KOG3078|consen   88 ENPRCQKGFILDGFPRTVQQAEELL----DRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDI  163 (235)
T ss_pred             cccccccccccCCCCcchHHHHHHH----HccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCcccccccc
Confidence            7776889999999999999888633    345789999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          190 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       190 ~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                      +++.|++|.+|.++.+..|+..|+++..++.+||...+.+..+++.. .++||..|...++
T Consensus       164 tgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~  223 (235)
T KOG3078|consen  164 TGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLS  223 (235)
T ss_pred             ccChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988 8999999988774

>PRK13808 adenylate kinase; Provisional

Probab=100.00  E-value=4.1e-34  Score=243.40  Aligned_cols=192  Identities=45%  Similarity=0.756  Sum_probs=174.2

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+|+     |||||||||+|+.|++.||++|++++++++.++...++.|..+.+++.+|..+|++++..++.+.+...
T Consensus         1 mrIiv~-----GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~   75 (333)
T PRK13808          1 MRLILL-----GPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQP   75 (333)
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            578888     999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      ++..||||||||++..|...|+.++...+..||++|+|++|++++++|+..|+.+...                   ++.
T Consensus        76 ~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~-------------------rg~  136 (333)
T PRK13808         76 DAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRA-------------------RGE  136 (333)
T ss_pred             cccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccc-------------------cCC
Confidence            7778999999999999999999888878889999999999999999999988632100                   111


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                        ..|.+++.+.+++|+..|+....++.+||.+.+.++.||++.++++|++.|...|.
T Consensus       137 --~~R~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~  192 (333)
T PRK13808        137 --EVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLA  192 (333)
T ss_pred             --ccCCCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHH
Confidence              13678899999999999999999999999988899999999999999999998874

>PRK14528 adenylate kinase; Provisional

Probab=100.00  E-value=6.4e-33  Score=221.44  Aligned_cols=185  Identities=43%  Similarity=0.771  Sum_probs=169.9

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      ++|+++     |||||||||+|+.|+++||+++++++++++..+..++++|..++.++..|..+|+.++..++...+...
T Consensus         2 ~~i~i~-----G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~   76 (186)
T PRK14528          2 KNIIFM-----GPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREA   76 (186)
T ss_pred             cEEEEE-----CCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCc
Confidence            357777     999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      .+..+||+||||++..|+..|.+++...+..++.+|+|+||++++.+|+..|..+                         
T Consensus        77 ~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~-------------------------  131 (186)
T PRK14528         77 DCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI-------------------------  131 (186)
T ss_pred             CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc-------------------------
Confidence            7778999999999999999999888777778999999999999999999998632                         


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                        ..|.+|+++.+++|+..|+....++.++|...+.++.|||++++++|++.|.+.+
T Consensus       132 --~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~~  186 (186)
T PRK14528        132 --EGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKEL  186 (186)
T ss_pred             --cCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhC
Confidence              1256889999999999999999999999999999999999999999999998753

>PRK14532 adenylate kinase; Provisional

Probab=100.00  E-value=1e-32  Score=220.94  Aligned_cols=186  Identities=41%  Similarity=0.719  Sum_probs=170.2

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+++     |+|||||||+|+.|++++|+.++++++++++.+..+++.+..+++++..|..+|++++..++...+...
T Consensus         1 ~~i~~~-----G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   75 (188)
T PRK14532          1 MNLILF-----GPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEA   75 (188)
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCc
Confidence            468888     999999999999999999999999999999999989999999999999999999999999999998877


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      ....|+|+||||++..|...+.+.+...+..|+.+|+|++|++++.+|+..|..+                         
T Consensus        76 ~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~-------------------------  130 (188)
T PRK14532         76 EAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEE-------------------------  130 (188)
T ss_pred             CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCc-------------------------
Confidence            7778999999999999999998888878888999999999999999999988421                         


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                        ..|++++.+.+.+|+..|+....++.++|.+.+.++.||++.+++++++.|.+.|+
T Consensus       131 --~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  186 (188)
T PRK14532        131 --QGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE  186 (188)
T ss_pred             --CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence              12567888899999999999999999999988889999999999999999998875

>PRK14531 adenylate kinase; Provisional

Probab=100.00  E-value=1.6e-32  Score=218.82  Aligned_cols=180  Identities=42%  Similarity=0.742  Sum_probs=165.7

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      ++|+++     |+|||||||+|+.|+++||++++++++++++++...++++..++.++..|..+|+.++..++...+...
T Consensus         3 ~~i~i~-----G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~   77 (183)
T PRK14531          3 QRLLFL-----GPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL   77 (183)
T ss_pred             cEEEEE-----CCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc
Confidence            468888     999999999999999999999999999999999999999999999999999999999999988887654


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                       ...+||+||||++..|+..|..++...+..++.+|+|+||++++.+|+..|.                           
T Consensus        78 -~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~---------------------------  129 (183)
T PRK14531         78 -NSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG---------------------------  129 (183)
T ss_pred             -cCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC---------------------------
Confidence             3568999999999999999998887777788999999999999999999884                           


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                          |.+|+++.+++|++.|++...++.++|...+.++.||++.+++++++.|.+.|
T Consensus       130 ----r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        130 ----RADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             ----CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence                35778899999999999999999999998889999999999999999998876

>PLN02842 nucleotide kinase

Probab=100.00  E-value=7.5e-32  Score=239.79  Aligned_cols=199  Identities=37%  Similarity=0.670  Sum_probs=180.9

Q ss_pred             ccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC-CCCceEE
Q 025529           42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-CQKGFIL  120 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~-~~~~~Ii  120 (251)
                      |.|+|||||||+|+.|+++|++.|++++++++.++..+++.|..+++++.+|..+|+..+..++..++.... ..++||+
T Consensus         2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~IL   81 (505)
T PLN02842          2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWLL   81 (505)
T ss_pred             eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEEE
Confidence            349999999999999999999999999999999999999999999999999999999999999999887654 3478999


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCC
Q 025529          121 DGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDD  200 (251)
Q Consensus       121 dg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~  200 (251)
                      ||||++..|+..|..    .+..||++|+|++|++++++|+.+|+.|+.||..||..+.||..+.    +++++..|.+|
T Consensus        82 DGfPRt~~Qa~~Le~----~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~----~~~rL~~R~DD  153 (505)
T PLN02842         82 DGYPRSFAQAQSLEK----LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEE----IKARLITRPDD  153 (505)
T ss_pred             eCCCCcHHHHHHHHh----cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccc----cccccccCCCC
Confidence            999999999887664    3467999999999999999999999999999999999999986544    34678899999


Q ss_pred             cHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          201 TAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       201 ~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                      +++.+++|+..|++...++.++|..  .++.||++.++++|++.|.+.|.
T Consensus       154 ~eE~IkkRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~  201 (505)
T PLN02842        154 TEEKVKARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLS  201 (505)
T ss_pred             CHHHHHHHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999964  78999999999999999998874

>PRK14527 adenylate kinase; Provisional

Probab=100.00  E-value=4.4e-31  Score=211.91  Aligned_cols=187  Identities=37%  Similarity=0.628  Sum_probs=169.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM  109 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l  109 (251)
                      .+++.|+++     |||||||||+|+.|+++|++.+++.+++++.....+++++..++.++.++..+|++++..++.+.+
T Consensus         4 ~~~~~i~i~-----G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l   78 (191)
T PRK14527          4 TKNKVVIFL-----GPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDEL   78 (191)
T ss_pred             CCCcEEEEE-----CCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence            467789999     999999999999999999999999999999999888999999999999999999999999999888


Q ss_pred             cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCC
Q 025529          110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV  189 (251)
Q Consensus       110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~  189 (251)
                      ...++ .+||+||||++..|...+..++...+..++.+|+|++|++++.+|+.+|...                      
T Consensus        79 ~~~~~-~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~----------------------  135 (191)
T PRK14527         79 AGMEP-VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQ----------------------  135 (191)
T ss_pred             hcCCC-CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCccc----------------------
Confidence            76554 5799999999999999898888777788899999999999999999998521                      


Q ss_pred             CCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          190 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       190 ~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                           ..|.+++.+.+++|++.|++...++.+||.+.+.++.|||+.++++|++.|...|
T Consensus       136 -----~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        136 -----EGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL  190 (191)
T ss_pred             -----CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence                 1356788999999999999999999999999899999999999999999998876

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=100.00  E-value=2.2e-31  Score=213.96  Aligned_cols=193  Identities=54%  Similarity=0.914  Sum_probs=173.7

Q ss_pred             EEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025529           35 LILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC  114 (251)
Q Consensus        35 i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~  114 (251)
                      |+++     |+|||||||+|+.|+++||+.++++++++++.+...++.+..+++++.++..+++.++..++...+.....
T Consensus         2 I~i~-----G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~   76 (194)
T cd01428           2 ILLL-----GPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDC   76 (194)
T ss_pred             EEEE-----CCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Confidence            5666     99999999999999999999999999999999988889999999999999999999999999998877655


Q ss_pred             CCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCc
Q 025529          115 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL  194 (251)
Q Consensus       115 ~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  194 (251)
                      ..+||+||||++..|...|...+.. ...++++|+|++|++++.+|+..|..++.+|..|+.        +.++.|+.++
T Consensus        77 ~~~~vldg~Pr~~~q~~~l~~~~~~-~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~--------~~~~~~~~~l  147 (194)
T cd01428          77 KKGFILDGFPRTVDQAEALDELLDE-GIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHL--------GKDDVTGEPL  147 (194)
T ss_pred             cCCEEEeCCCCCHHHHHHHHHHHhc-CCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCc--------CCCcccCCcc
Confidence            6799999999999999988876532 236899999999999999999999999999999998        2334567888


Q ss_pred             ccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHH
Q 025529          195 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEV  241 (251)
Q Consensus       195 ~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev  241 (251)
                      ..|.+++.+.+++|+..|+....++.+||.+.+.++.||++.+++++
T Consensus       148 ~~r~dd~~~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v  194 (194)
T cd01428         148 SQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV  194 (194)
T ss_pred             ccCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence            88999999999999999999999999999998999999999998764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK02496 adk adenylate kinase; Provisional

Probab=100.00  E-value=5.2e-31  Score=210.32  Aligned_cols=182  Identities=45%  Similarity=0.807  Sum_probs=167.0

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      ++++|+     |+|||||||+|+.|+++||+++++++++++..+..+++.|..++.++.+|..+|++++..++..++...
T Consensus         2 ~~i~i~-----G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~   76 (184)
T PRK02496          2 TRLIFL-----GPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQP   76 (184)
T ss_pred             eEEEEE-----CCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCc
Confidence            578888     999999999999999999999999999999999989999999999999999999999999999998877


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      ++..+||+||||++..|...+...+...+..++.+|+|++|.+++.+|+..|.                           
T Consensus        77 ~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~---------------------------  129 (184)
T PRK02496         77 DAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG---------------------------  129 (184)
T ss_pred             CccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC---------------------------
Confidence            66789999999999999988888776666788999999999999999999884                           


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                          +.++..+.+++|+..|+....++.++|...+.++.|||+.++++|++.|.+.|.
T Consensus       130 ----~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l~  183 (184)
T PRK02496        130 ----RKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALA  183 (184)
T ss_pred             ----CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence                246678899999999999999999999888889999999999999999998874

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=100.00  E-value=8.4e-31  Score=208.84  Aligned_cols=181  Identities=31%  Similarity=0.568  Sum_probs=160.3

Q ss_pred             ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCceE
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFI  119 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~I  119 (251)
                      |+|.|+|||||||+|+.|++++|+.++++++++++.+...++.+..+++++.+|..+|++++..++...+.... .++||
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~~v   80 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG-SKKFL   80 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC-CCcEE
Confidence            44459999999999999999999999999999999998888899999999999999999999999998887655 67899


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCC
Q 025529          120 LDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD  199 (251)
Q Consensus       120 idg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~  199 (251)
                      +||||++..+...|..++. .+..|+.+|+|++|++++.+|+..|...                           ..|.+
T Consensus        81 lDg~p~~~~q~~~~~~~~~-~~~~~d~~i~l~~~~~~~~~Rl~~R~~~---------------------------~~r~d  132 (183)
T TIGR01359        81 IDGFPRNEENLEAWEKLMD-NKVNFKFVLFFDCPEEVMIKRLLKRGQS---------------------------SGRVD  132 (183)
T ss_pred             EeCCCCCHHHHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHhcCCcc---------------------------CCCCC
Confidence            9999999999998887764 3357899999999999999999988521                           11356


Q ss_pred             CcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          200 DTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       200 ~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                      ++.+.+++|+..|.+...++.++|...+.++.||++.+++++++.|.+.|
T Consensus       133 d~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       133 DNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF  182 (183)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence            67899999999999999999999998888999999999999999999876

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PLN02200 adenylate kinase family protein

Probab=99.98  E-value=4.1e-30  Score=211.72  Aligned_cols=182  Identities=31%  Similarity=0.559  Sum_probs=162.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~  110 (251)
                      .++.|++.     |+|||||||+|+.|+++||++|+++++++++.+...++.+..+.+.+..|..+|++.+..++...+.
T Consensus        42 ~~~ii~I~-----G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~  116 (234)
T PLN02200         42 TPFITFVL-----GGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEME  116 (234)
T ss_pred             CCEEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Confidence            45667777     9999999999999999999999999999999999889999999999999999999999999888886


Q ss_pred             CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529          111 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT  190 (251)
Q Consensus       111 ~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~  190 (251)
                      ... ..+||+||||++..|+..|.+.+   +..||++|+|++|++++.+|+..|+.                        
T Consensus       117 ~~~-~~~~ILDG~Prt~~q~~~l~~~~---~~~pd~vi~Ld~~~e~~~~Rl~~R~~------------------------  168 (234)
T PLN02200        117 SSD-NNKFLIDGFPRTEENRIAFERII---GAEPNVVLFFDCPEEEMVKRVLNRNQ------------------------  168 (234)
T ss_pred             cCC-CCeEEecCCcccHHHHHHHHHHh---ccCCCEEEEEECCHHHHHHHHHcCcC------------------------
Confidence            543 46899999999999998887654   35789999999999999999998851                        


Q ss_pred             CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                           .|.+++.+.+++|++.|+....++.++|+..+.++.|||+.++++|++.|.+.|.
T Consensus       169 -----~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~  223 (234)
T PLN02200        169 -----GRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFA  223 (234)
T ss_pred             -----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence                 1456778999999999999999999999988899999999999999999998764

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.97  E-value=1.7e-29  Score=199.14  Aligned_cols=177  Identities=42%  Similarity=0.786  Sum_probs=166.2

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+|+     |+|||||||+|+.|+++++++|++++++++......+++|..++.++.+|..+|+.+...++..++...
T Consensus         1 ~riiil-----G~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~   75 (178)
T COG0563           1 MRILIL-----GPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEA   75 (178)
T ss_pred             CeEEEE-----CCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhh
Confidence            578999     999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      ++..+||+||||++..|++.+...+...+...+.++.++++.+.+..|+..|..                          
T Consensus        76 d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~--------------------------  129 (178)
T COG0563          76 DCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV--------------------------  129 (178)
T ss_pred             cccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc--------------------------
Confidence            766699999999999999999999888888999999999999999999999851                          


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                          |.+|.++.+++|+..|+....++..+|.     +.||+..+++++++.+.+.+
T Consensus       130 ----r~dd~~~~~~~R~~~y~~~~~pli~~y~-----~~id~~~~i~~v~~~i~~~l  177 (178)
T COG0563         130 ----REDDNEETVKKRLKVYHEQTAPLIEYYS-----VTIDGSGEIEEVLADILKAL  177 (178)
T ss_pred             ----cccCCHHHHHHHHHHHHhcccchhhhhe-----eeccCCCCHHHHHHHHHHhh
Confidence                5689999999999999999999999996     78999999999999998876

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.97  E-value=5.8e-29  Score=192.35  Aligned_cols=148  Identities=45%  Similarity=0.863  Sum_probs=134.1

Q ss_pred             CCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCceEEeCC
Q 025529           44 GPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGF  123 (251)
Q Consensus        44 G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~  123 (251)
                      |||||||||+|+.|+++||+.||++++++++.+...++.|..+++++.+|..+|++++.+++...+....+.+|||+|||
T Consensus         3 G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ildGf   82 (151)
T PF00406_consen    3 GPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILDGF   82 (151)
T ss_dssp             ESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEESB
T ss_pred             CCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999987766789999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHH
Q 025529          124 PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAA  203 (251)
Q Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~  203 (251)
                      |++..|+..|...+...+..|+.+|+|+||++++.+|+..                                    ++.+
T Consensus        83 Prt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~------------------------------------d~~~  126 (151)
T PF00406_consen   83 PRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ------------------------------------DNEE  126 (151)
T ss_dssp             -SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT------------------------------------GSHH
T ss_pred             cccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc------------------------------------CCHH
Confidence            9999999999987777778999999999999999999874                                    4568


Q ss_pred             HHHHHHHHHHhccHHHHHHHhhCC
Q 025529          204 VLKSRLEAFHKQTEPVIDYYSKKG  227 (251)
Q Consensus       204 ~~~~r~~~y~~~~~~~~~~~~~~~  227 (251)
                      .+++|+..|+++..++.++|.+.|
T Consensus       127 ~i~~Rl~~y~~~~~~i~~~y~~~g  150 (151)
T PF00406_consen  127 VIKKRLEEYRENTEPILDYYKEQG  150 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999765

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.96  E-value=1e-26  Score=185.78  Aligned_cols=183  Identities=36%  Similarity=0.578  Sum_probs=156.4

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK  111 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~  111 (251)
                      .+.++++     |+|||||||+|+.|++++|+.++++++++++.+...++.+..++..+.++..+|...+...+...+..
T Consensus         3 ~~ii~i~-----G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   77 (188)
T TIGR01360         3 CKIIFIV-----GGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVA   77 (188)
T ss_pred             CcEEEEE-----CCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence            3467777     99999999999999999999999999999998777788888899999999899988888888776654


Q ss_pred             -CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529          112 -PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT  190 (251)
Q Consensus       112 -~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~  190 (251)
                       .....+||+||||++..|...+...    ...|+.+|+|++|++.+.+|+..|...                       
T Consensus        78 ~~~~~~~~i~dg~~~~~~q~~~~~~~----~~~~~~vi~l~~~~~~~~~Rl~~R~~~-----------------------  130 (188)
T TIGR01360        78 ALGTSKGFLIDGYPREVKQGEEFERR----IGPPTLVLYFDCSEDTMVKRLLKRAET-----------------------  130 (188)
T ss_pred             ccCcCCeEEEeCCCCCHHHHHHHHHc----CCCCCEEEEEECCHHHHHHHHHccccc-----------------------
Confidence             3455789999999999888876542    246899999999999999999988410                       


Q ss_pred             CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                          ..|.+++.+.+.+|+..|+....++.++|...+.++.||++.+++++++.|.+.|+
T Consensus       131 ----~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  186 (188)
T TIGR01360       131 ----SGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAID  186 (188)
T ss_pred             ----CCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence                12467788899999999999999999999877889999999999999999998875

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK13974 thymidylate kinase; Provisional

Probab=99.75  E-value=4.5e-17  Score=132.66  Aligned_cols=178  Identities=16%  Similarity=0.165  Sum_probs=114.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec--hhHHHHHHHHcCCchHHHHHHHHHcC--CCcCHHHHHHHH-
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA--TGDMLRAAVAAKTPLGIKAKEAMDKG--ELVSDDLVVGII-  105 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~--~~~li~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~ll-  105 (251)
                      ++..|+|+     |++||||||+++.|++.+.-.-.-  ....+....+.++++|+.+++++...  ...++.....++ 
T Consensus         2 ~g~~i~~e-----G~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf   76 (212)
T PRK13974          2 KGKFIVLE-----GIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLY   76 (212)
T ss_pred             CCcEEEEE-----CCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHH
Confidence            36788999     999999999999999988421100  00101111234678999999998632  223333322222 


Q ss_pred             -HHH-------HcC-CCCCCceEE----------eCCCCCHH--HHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          106 -DEA-------MKK-PSCQKGFIL----------DGFPRTEV--QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       106 -~~~-------l~~-~~~~~~~Ii----------dg~~~~~~--~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                       ..+       +.. ...+..+|.          +|+|+...  ....+.... ..+..|+++|+|+||++++.+|+..|
T Consensus        77 ~adr~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~-~~~~~pd~~i~ld~~~~~~~~R~~~R  155 (212)
T PRK13974         77 AADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIA-TQGLSPDLTFFLEISVEESIRRRKNR  155 (212)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHH-hCCCCCCEEEEEeCCHHHHHHHHHhc
Confidence             111       111 111222333          45555432  234444332 23467999999999999999998876


Q ss_pred             cCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHH
Q 025529          165 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSE  244 (251)
Q Consensus       165 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~  244 (251)
                      .                                 ++   .++++...|++...+.+.+|.+.+.++.||++.++++++++
T Consensus       156 ~---------------------------------dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~  199 (212)
T PRK13974        156 K---------------------------------PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNE  199 (212)
T ss_pred             c---------------------------------cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHH
Confidence            2                                 22   24456677888888888899988899999999999999999


Q ss_pred             HHHHhc
Q 025529          245 VQKALS  250 (251)
Q Consensus       245 i~~~l~  250 (251)
                      |.+.|.
T Consensus       200 I~~~l~  205 (212)
T PRK13974        200 IKETLL  205 (212)
T ss_pred             HHHHHH
Confidence            988874

>PRK01184 hypothetical protein; Provisional

Probab=99.75  E-value=4.2e-16  Score=124.22  Aligned_cols=169  Identities=20%  Similarity=0.207  Sum_probs=107.7

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHc-CC-----chHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KT-----PLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~-~~-----~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      +|+|+|+|||||||+++ +++++|++++++++++++.+.. +.     .+|.........   +....+..++...+.. 
T Consensus         3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~~-   77 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE---LGMDAVAKRTVPKIRE-   77 (184)
T ss_pred             EEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH---HChHHHHHHHHHHHHh-
Confidence            34555999999999987 7788999999999999998743 22     244444443321   1223343444344433 


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      .....+|+||+ +...+...+.+.+    ..+..+|++++|.+++.+|+..|...                         
T Consensus        78 ~~~~~vvidg~-r~~~e~~~~~~~~----~~~~~~i~v~~~~~~~~~Rl~~R~~~-------------------------  127 (184)
T PRK01184         78 KGDEVVVIDGV-RGDAEVEYFRKEF----PEDFILIAIHAPPEVRFERLKKRGRS-------------------------  127 (184)
T ss_pred             cCCCcEEEeCC-CCHHHHHHHHHhC----CcccEEEEEECCHHHHHHHHHHcCCC-------------------------
Confidence            23457999998 6777777666543    12458999999999999999987310                         


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                          ....+.+.+.+|......  .+..+.+... . +.|+.+.+.+++..+|.+.++
T Consensus       128 ----~d~~~~~~~~~r~~~q~~--~~~~~~~~~a-d-~vI~N~~~~~~l~~~v~~~~~  177 (184)
T PRK01184        128 ----DDPKSWEELEERDERELS--WGIGEVIALA-D-YMIVNDSTLEEFRARVRKLLE  177 (184)
T ss_pred             ----CChhhHHHHHHHHHHHhc--cCHHHHHHhc-C-EEEeCCCCHHHHHHHHHHHHH
Confidence                001235667777654321  1122333222 2 345667899999999987764

>PRK03839 putative kinase; Provisional

Probab=99.74  E-value=1.6e-16  Score=126.21  Aligned_cols=151  Identities=18%  Similarity=0.266  Sum_probs=94.8

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+++     |+|||||||+++.|+++++++++++|+++++.     .++.....    .    .....+.+...+...
T Consensus         1 m~I~l~-----G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-----~~~~~~~~----~----~~~~~~~l~~~~~~~   62 (180)
T PRK03839          1 MIIAIT-----GTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-----GIGEEKDD----E----MEIDFDKLAYFIEEE   62 (180)
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-----CCcccCCh----h----hhcCHHHHHHHHHHh
Confidence            467777     99999999999999999999999999987652     11111100    0    011122222222221


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      ....++|+||+....              ..++.+|+|+++++++.+|+..|...                         
T Consensus        63 ~~~~~vIidG~~~~l--------------~~~~~vi~L~~~~~~~~~Rl~~R~~~-------------------------  103 (180)
T PRK03839         63 FKEKNVVLDGHLSHL--------------LPVDYVIVLRAHPKIIKERLKERGYS-------------------------  103 (180)
T ss_pred             ccCCCEEEEeccccc--------------cCCCEEEEEECCHHHHHHHHHHcCCC-------------------------
Confidence            224569999974311              35789999999999999999877310                         


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS  250 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~  250 (251)
                          ++. ..+....++.   .  ..+.+.|...+.++.||++ .++++++++|.+.|.
T Consensus       104 ----~~~-~~~~~~~~~~---~--~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~  152 (180)
T PRK03839        104 ----KKK-ILENVEAELV---D--VCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIK  152 (180)
T ss_pred             ----HHH-HHHHHHHHHH---H--HHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHh
Confidence                001 0111111111   1  1123445555678899996 799999999998875

>PRK13973 thymidylate kinase; Provisional

Probab=99.71  E-value=9.1e-16  Score=125.08  Aligned_cols=173  Identities=23%  Similarity=0.254  Sum_probs=104.0

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcC--CCcCH--------
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG--ELVSD--------   98 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~--~~~~~--------   98 (251)
                      ++.|+|+     |++||||||+++.|++++   |+.++.+..      +.+++.|+.+++.+..+  .....        
T Consensus         3 g~~IviE-----G~dGsGKtTq~~~l~~~l~~~g~~~~~~~~------p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~   71 (213)
T PRK13973          3 GRFITFE-----GGEGAGKSTQIRLLAERLRAAGYDVLVTRE------PGGSPGAEAIRHVLLSGAAELYGPRMEALLFA   71 (213)
T ss_pred             ceEEEEE-----cCCCCCHHHHHHHHHHHHHHCCCeEEEEEC------CCCCchHHHHHHHHcCCCccCCCHHHHHHHHH
Confidence            6789999     999999999999999999   887776621      11233444444444321  11111        


Q ss_pred             ----HHHHHHHHHHHcCCCCCCceEEeCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529           99 ----DLVVGIIDEAMKKPSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT  162 (251)
Q Consensus        99 ----~~~~~ll~~~l~~~~~~~~~Iidg~~~~------------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~  162 (251)
                          ..+...+...+..   +.-+|.|+|..+            ..+...+.... .....||++|+|++|++++.+|+.
T Consensus        72 a~r~~~~~~~i~~~l~~---g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~-~~~~~PD~vi~Ldv~~e~~~~Rl~  147 (213)
T PRK13973         72 AARDDHVEEVIRPALAR---GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVA-INGVMPDLTLILDIPAEVGLERAA  147 (213)
T ss_pred             HHHHHHHHHHHHHHHHC---CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHH-hCCCCCCEEEEEeCCHHHHHHHHH
Confidence                1222333333322   223455765422            11222332221 223679999999999999999999


Q ss_pred             cCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCC-CcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHH
Q 025529          163 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD-DTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEV  241 (251)
Q Consensus       163 ~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~-~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev  241 (251)
                      .|..... .                        .+.+ +..+..+++...|.+..    +++  .+.++.||++.++++|
T Consensus       148 ~R~~~~~-~------------------------~~~e~~~~~~~~~~~~~y~~l~----~~~--~~~~~~Ida~~~~e~V  196 (213)
T PRK13973        148 KRRGSDT-P------------------------DRFEKEDLAFHEKRREAFLQIA----AQE--PERCVVIDATASPEAV  196 (213)
T ss_pred             hccCCCc-c------------------------CchhhchHHHHHHHHHHHHHHH----HhC--CCcEEEEcCCCCHHHH
Confidence            8852110 0                        0112 23455566666665532    222  2368899999999999


Q ss_pred             HHHHHHHhc
Q 025529          242 TSEVQKALS  250 (251)
Q Consensus       242 ~~~i~~~l~  250 (251)
                      +++|.+.|.
T Consensus       197 ~~~I~~~i~  205 (213)
T PRK13973        197 AAEIWAAVD  205 (213)
T ss_pred             HHHHHHHHH
Confidence            999988774

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.68  E-value=4.5e-15  Score=112.29  Aligned_cols=111  Identities=20%  Similarity=0.231  Sum_probs=74.4

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCce
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF  118 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~  118 (251)
                      +|+|+|+|||||||+|+.||++||+++++.+.++|+......---..+.++-+.+..+ |    ..+..+.........+
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~i-D----~~iD~rq~e~a~~~nv   76 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEI-D----KEIDRRQKELAKEGNV   76 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchh-h----HHHHHHHHHHHHcCCe
Confidence            3566699999999999999999999999999999987664322223333343333332 2    2222222222224568


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          119 ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       119 Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      |++|....         ++..  ...++.|||.+|.++..+|+..|.
T Consensus        77 VlegrLA~---------Wi~k--~~adlkI~L~Apl~vRa~Ria~RE  112 (179)
T COG1102          77 VLEGRLAG---------WIVR--EYADLKIWLKAPLEVRAERIAKRE  112 (179)
T ss_pred             EEhhhhHH---------HHhc--cccceEEEEeCcHHHHHHHHHHhc
Confidence            88875321         2211  346899999999999999999884

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.67  E-value=3.3e-15  Score=115.59  Aligned_cols=111  Identities=20%  Similarity=0.250  Sum_probs=73.6

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCC-cCHHHHHHHHHHHHc
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL-VSDDLVVGIIDEAMK  110 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~ll~~~l~  110 (251)
                      .+.|+++     |++||||||+++.||+.++++++++|.++.+      ..|..+.+++...++ -....-.+++.+.+.
T Consensus         2 ~~~IvLi-----G~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~------~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~   70 (172)
T COG0703           2 NMNIVLI-----GFMGAGKSTIGRALAKALNLPFIDTDQEIEK------RTGMSIAEIFEEEGEEGFRRLETEVLKELLE   70 (172)
T ss_pred             CccEEEE-----cCCCCCHhHHHHHHHHHcCCCcccchHHHHH------HHCcCHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence            4578999     9999999999999999999999999999987      445666666664332 212222333333332


Q ss_pred             CCCCCCceEEeCCCC--CHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          111 KPSCQKGFILDGFPR--TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       111 ~~~~~~~~Iidg~~~--~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                      ..   ..+|-.|...  .......+    ..+    ..+|||++|.+++.+|+...
T Consensus        71 ~~---~~ViaTGGG~v~~~enr~~l----~~~----g~vv~L~~~~e~l~~Rl~~~  115 (172)
T COG0703          71 ED---NAVIATGGGAVLSEENRNLL----KKR----GIVVYLDAPFETLYERLQRD  115 (172)
T ss_pred             cC---CeEEECCCccccCHHHHHHH----HhC----CeEEEEeCCHHHHHHHhccc
Confidence            22   2455444322  22223322    222    37999999999999999944

>PRK06217 hypothetical protein; Validated

Probab=99.67  E-value=4.1e-15  Score=118.48  Aligned_cols=171  Identities=18%  Similarity=0.252  Sum_probs=105.3

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      ++|+|+     |++||||||+|+.|++++|++++++|++++.  ..+.+++          ...+.+.....+...+.  
T Consensus         2 ~~I~i~-----G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~--   62 (183)
T PRK06217          2 MRIHIT-----GASGSGTTTLGAALAERLDIPHLDTDDYFWL--PTDPPFT----------TKRPPEERLRLLLEDLR--   62 (183)
T ss_pred             eEEEEE-----CCCCCCHHHHHHHHHHHcCCcEEEcCceeec--cCCCCcc----------ccCCHHHHHHHHHHHHh--
Confidence            568888     9999999999999999999999999987753  1111111          11233334444444432  


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                       ...+||+||++....  ..   ++    ..++.+|||++|.+++.+|+..|.... .|+.       + -.+.+     
T Consensus        63 -~~~~~vi~G~~~~~~--~~---~~----~~~d~~i~Ld~~~~~~~~Rl~~R~~~~-~~~~-------~-~~~~~-----  118 (183)
T PRK06217         63 -PREGWVLSGSALGWG--DP---LE----PLFDLVVFLTIPPELRLERLRLREFQR-YGNR-------I-LPGGD-----  118 (183)
T ss_pred             -cCCCEEEEccHHHHH--HH---HH----hhCCEEEEEECCHHHHHHHHHcCcccc-cCcc-------c-CCCCC-----
Confidence             235799999875421  11   11    346889999999999999999985321 1110       0 00000     


Q ss_pred             CcccCCCCcHHHHHHHHHHHHh------ccHHHHHHHhhC-CcEEEEcCCCChhHHHHHHHHHhcC
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHK------QTEPVIDYYSKK-GIVAQLHAEKPPQEVTSEVQKALSA  251 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~------~~~~~~~~~~~~-~~~~~id~~~~~eev~~~i~~~l~~  251 (251)
                           .+.....+.++...|..      .......++... ..++.+++..+++++++.|...|++
T Consensus       119 -----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~  179 (183)
T PRK06217        119 -----MHKASLEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS  179 (183)
T ss_pred             -----HHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence                 01122334444444442      222233344432 4678889999999999999998863

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.66  E-value=3.4e-15  Score=119.92  Aligned_cols=162  Identities=15%  Similarity=0.115  Sum_probs=104.2

Q ss_pred             ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCC------CcCHHH-------------
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE------LVSDDL-------------  100 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~------~~~~~~-------------  100 (251)
                      |+|+|++||||||+++.|++.+|+++++.|.+.+..+.++++.+..+.+.+..+.      .+....             
T Consensus         4 i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~~~   83 (195)
T PRK14730          4 IGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEERR   83 (195)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHHHH
Confidence            4555999999999999999999999999999999999888888888877765322      222111             


Q ss_pred             -----HHHHHH----HHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCC
Q 025529          101 -----VVGIID----EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG  171 (251)
Q Consensus       101 -----~~~ll~----~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~  171 (251)
                           ++.++.    ..+........+++| .|...+.  .+.       ..+|.+|+++||.+++++|+..|.      
T Consensus        84 ~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e-~pll~E~--~~~-------~~~D~ii~V~a~~e~r~~Rl~~R~------  147 (195)
T PRK14730         84 WLENLIHPYVRERFEEELAQLKSNPIVVLV-IPLLFEA--KLT-------DLCSEIWVVDCSPEQQLQRLIKRD------  147 (195)
T ss_pred             HHHHHHhHHHHHHHHHHHHhcCCCCEEEEE-eHHhcCc--chH-------hCCCEEEEEECCHHHHHHHHHHcC------
Confidence                 111121    122222111223343 2322211  111       357999999999999999999883      


Q ss_pred             ceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          172 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       172 ~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                                 +.+.+.+.+|+...   + +....... .. +.|+.+.+.+++.++|.+.+.
T Consensus       148 ---------------------------g~s~e~~~~ri~~Q---~-~~~~k~~~-aD-~vI~N~g~~e~l~~qv~~~l~  193 (195)
T PRK14730        148 ---------------------------GLTEEEAEARINAQ---W-PLEEKVKL-AD-VVLDNSGDLEKLYQQVDQLLK  193 (195)
T ss_pred             ---------------------------CCCHHHHHHHHHhC---C-CHHHHHhh-CC-EEEECCCCHHHHHHHHHHHHh
Confidence                                       34556777777652   2 11211111 12 356888899999999987653

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.65  E-value=1e-15  Score=122.93  Aligned_cols=161  Identities=17%  Similarity=0.167  Sum_probs=104.2

Q ss_pred             ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHH---------------
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDD---------------   99 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~---------------   99 (251)
                      |+|+|++||||||+++.|++ +|+++++.|.+.++.+.++++....+.+.+..+     +.+...               
T Consensus         5 i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~~   83 (194)
T PRK00081          5 IGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEARKK   83 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHHHH
Confidence            44559999999999999998 999999999999998888887777777666432     223221               


Q ss_pred             ---HHHHHHHHH----HcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCc
Q 025529          100 ---LVVGIIDEA----MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGR  172 (251)
Q Consensus       100 ---~~~~ll~~~----l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~  172 (251)
                         +++..+...    +.......-+|+|. |...+.  .       ....+|.+|++++|+++..+|+..|.       
T Consensus        84 L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e~--~-------~~~~~D~vi~V~a~~e~~~~Rl~~R~-------  146 (194)
T PRK00081         84 LEAILHPLIREEILEQLQEAESSPYVVLDI-PLLFEN--G-------LEKLVDRVLVVDAPPETQLERLMARD-------  146 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccCCEEEEEe-hHhhcC--C-------chhhCCeEEEEECCHHHHHHHHHHcC-------
Confidence               111111122    21111112344443 332221  1       11347999999999999999999873       


Q ss_pred             eecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          173 TYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       173 ~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                                +.+.+.+..|+..+...    .+.....  -+.|+++++++++.+++.+.++
T Consensus       147 --------------------------~~s~e~~~~ri~~Q~~~----~~~~~~a--d~vI~N~g~~e~l~~qv~~i~~  192 (194)
T PRK00081        147 --------------------------GLSEEEAEAIIASQMPR----EEKLARA--DDVIDNNGDLEELRKQVERLLQ  192 (194)
T ss_pred             --------------------------CCCHHHHHHHHHHhCCH----HHHHHhC--CEEEECCCCHHHHHHHHHHHHH
Confidence                                      44567888888754321    2211111  2567888899999999988775

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.65  E-value=2e-14  Score=115.74  Aligned_cols=176  Identities=23%  Similarity=0.294  Sum_probs=107.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcC-CCcCHHHHHHH--
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-ELVSDDLVVGI--  104 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~l--  104 (251)
                      .++.|+|+     |+.||||||+++.|++++   |+.++-+.      .+.++++|..+++++.++ ..+......-+  
T Consensus         2 ~g~fI~iE-----GiDGaGKTT~~~~L~~~l~~~g~~v~~tr------EP~~~~ige~iR~~ll~~~~~~~~~~e~lLfa   70 (208)
T COG0125           2 KGMFIVIE-----GIDGAGKTTQAELLKERLEERGIKVVLTR------EPGGTPIGEKIRELLLNGEEKLSPKAEALLFA   70 (208)
T ss_pred             CceEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCChHHHHHHHHHcCCccCCCHHHHHHHHH
Confidence            57899999     999999999999999998   44443332      144588999999998876 34444332222  


Q ss_pred             ------HHHHHcC-CCCCCceEEeCCCCCHHHHHH---------HHHH--HHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025529          105 ------IDEAMKK-PSCQKGFILDGFPRTEVQAQK---------LDEM--LEKQGKKVDKVLNFAIDDAVLEERITGRWI  166 (251)
Q Consensus       105 ------l~~~l~~-~~~~~~~Iidg~~~~~~~~~~---------l~~~--~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~  166 (251)
                            +...+.. ......+|.|.|..+...+..         +.++  +...+..||+++||++|+++.++|+.+|..
T Consensus        71 adR~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~  150 (208)
T COG0125          71 ADRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGE  150 (208)
T ss_pred             HHHHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence                  2222221 122345677887655332221         1111  112245899999999999999999999852


Q ss_pred             CCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHH
Q 025529          167 HPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV  245 (251)
Q Consensus       167 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~-~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i  245 (251)
                      ..                           .|.+.....+.++. +.|    ..+.+.+  .+.+++||++.++++|.+.|
T Consensus       151 ~~---------------------------~r~E~~~~~f~~kvr~~Y----~~la~~~--~~r~~vIda~~~~e~v~~~i  197 (208)
T COG0125         151 LR---------------------------DRFEKEDDEFLEKVREGY----LELAAKF--PERIIVIDASRPLEEVHEEI  197 (208)
T ss_pred             cc---------------------------chhhhHHHHHHHHHHHHH----HHHHhhC--CCeEEEEECCCCHHHHHHHH
Confidence            10                           01111111122222 222    2222222  22589999999999999999


Q ss_pred             HHHhc
Q 025529          246 QKALS  250 (251)
Q Consensus       246 ~~~l~  250 (251)
                      .++|.
T Consensus       198 ~~~l~  202 (208)
T COG0125         198 LKILK  202 (208)
T ss_pred             HHHHH
Confidence            88774

>PRK13949 shikimate kinase; Provisional

Probab=99.65  E-value=1.4e-14  Score=113.88  Aligned_cols=108  Identities=18%  Similarity=0.265  Sum_probs=70.5

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHH-cCCCcCHHHHHHHHHHHHcCC
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      +|+++     |+|||||||+++.|++.++++++++|.++....      +..+.+++. .|..........++.+ +.. 
T Consensus         3 ~I~li-----G~~GsGKstl~~~La~~l~~~~id~D~~i~~~~------~~~~~~~~~~~g~~~fr~~e~~~l~~-l~~-   69 (169)
T PRK13949          3 RIFLV-----GYMGAGKTTLGKALARELGLSFIDLDFFIENRF------HKTVGDIFAERGEAVFRELERNMLHE-VAE-   69 (169)
T ss_pred             EEEEE-----CCCCCCHHHHHHHHHHHcCCCeecccHHHHHHH------CccHHHHHHHhCHHHHHHHHHHHHHH-HHh-
Confidence            58888     999999999999999999999999999886632      223333333 2222222233333333 221 


Q ss_pred             CCCCceEE-eC--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          113 SCQKGFIL-DG--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       113 ~~~~~~Ii-dg--~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                        ..++|+ +|  .+........+.+        .+++|||++|.+++.+|+..+
T Consensus        70 --~~~~vis~Ggg~~~~~~~~~~l~~--------~~~vi~L~~~~~~~~~Ri~~~  114 (169)
T PRK13949         70 --FEDVVISTGGGAPCFFDNMELMNA--------SGTTVYLKVSPEVLFVRLRLA  114 (169)
T ss_pred             --CCCEEEEcCCcccCCHHHHHHHHh--------CCeEEEEECCHHHHHHHHhcC
Confidence              235565 44  3444444544432        368999999999999999854

>PRK13975 thymidylate kinase; Provisional

Probab=99.63  E-value=2.6e-14  Score=114.90  Aligned_cols=171  Identities=15%  Similarity=0.192  Sum_probs=96.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHH-H----
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID-E----  107 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~-~----  107 (251)
                      +.|+|+     |++||||||+++.|+++++..+...        +.++..|..+++++..+ ......+..+.. .    
T Consensus         3 ~~I~ie-----G~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~   68 (196)
T PRK13975          3 KFIVFE-----GIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGS-KCDKETLALLFAADRVEH   68 (196)
T ss_pred             eEEEEE-----CCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHH
Confidence            578888     9999999999999999998432110        11234556666665543 222221111110 0    


Q ss_pred             --HHcCCCCCCceEEeCCCCCHHHH-------HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccC
Q 025529          108 --AMKKPSCQKGFILDGFPRTEVQA-------QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKF  178 (251)
Q Consensus       108 --~l~~~~~~~~~Iidg~~~~~~~~-------~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~  178 (251)
                        .+........+|.|++..+-.-.       ..+...+......|+++|||++|++++.+|+..|..            
T Consensus        69 ~~~i~~~~~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~------------  136 (196)
T PRK13975         69 VKEIEEDLKKRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDK------------  136 (196)
T ss_pred             HHHHHHHHcCCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCc------------
Confidence              01110112467888775431100       001111112224689999999999999999997731            


Q ss_pred             CCCCCCCCCCCCCCCcccCCCC-cHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529          179 APPKVPGVDDVTGEPLIQRKDD-TAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS  250 (251)
Q Consensus       179 ~~p~~~~~~~~~~~~~~~r~~~-~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~  250 (251)
                                         +.. ..+..++....|.+...  ..++.....++.||++ .+++++++.|.+.|.
T Consensus       137 -------------------~~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~  189 (196)
T PRK13975        137 -------------------EIFEKKEFLKKVQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIK  189 (196)
T ss_pred             -------------------cccchHHHHHHHHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHH
Confidence                               111 22333333344444322  2222223357899996 899999999998775

>PRK08356 hypothetical protein; Provisional

Probab=99.63  E-value=6.9e-15  Score=118.32  Aligned_cols=118  Identities=18%  Similarity=0.326  Sum_probs=79.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcC----C---chHHH----HHHHHHcCCCcCH-
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK----T---PLGIK----AKEAMDKGELVSD-   98 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~----~---~~~~~----i~~~l~~~~~~~~-   98 (251)
                      +.|.|++.     |||||||||+|+.|+ ++|++++++++.++......    +   ..+..    ...++..+..+++ 
T Consensus         4 ~~~~i~~~-----G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~   77 (195)
T PRK08356          4 EKMIVGVV-----GKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEK   77 (195)
T ss_pred             CcEEEEEE-----CCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHh
Confidence            34667777     999999999999996 48999999997543322211    1   11111    1234444444442 


Q ss_pred             ---HHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529           99 ---DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus        99 ---~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                         .++..+..+.+..   ...+++||+ ++..+...|...       ...+|++++|.+++.+|+..|.
T Consensus        78 yG~~~~~~~~~~~~~~---~~~ividG~-r~~~q~~~l~~~-------~~~vi~l~~~~~~~~~Rl~~R~  136 (195)
T PRK08356         78 YGEDILIRLAVDKKRN---CKNIAIDGV-RSRGEVEAIKRM-------GGKVIYVEAKPEIRFERLRRRG  136 (195)
T ss_pred             cCcHHHHHHHHHHhcc---CCeEEEcCc-CCHHHHHHHHhc-------CCEEEEEECCHHHHHHHHHhcC
Confidence               4455555555522   235999999 999998876542       2479999999999999999884

>PLN02924 thymidylate kinase

Probab=99.61  E-value=2.3e-14  Score=117.02  Aligned_cols=175  Identities=15%  Similarity=0.141  Sum_probs=104.0

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH-HH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII-DE  107 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll-~~  107 (251)
                      +++++.|+|+     |++||||||+++.|++.+....+.+ .+++ +....++.|+.+++++..+..+......-+. ..
T Consensus        13 ~~~g~~IviE-----GiDGsGKsTq~~~L~~~l~~~g~~v-~~~~-ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~ad   85 (220)
T PLN02924         13 ESRGALIVLE-----GLDRSGKSTQCAKLVSFLKGLGVAA-ELWR-FPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSAN   85 (220)
T ss_pred             CCCCeEEEEE-----CCCCCCHHHHHHHHHHHHHhcCCCc-eeee-CCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence            4578899999     9999999999999999996443333 1121 1223577888899888765544443222111 01


Q ss_pred             H------Hc-CCCCCCceEEeCCCCCHHHHHH-----HH--HHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCce
Q 025529          108 A------MK-KPSCQKGFILDGFPRTEVQAQK-----LD--EMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRT  173 (251)
Q Consensus       108 ~------l~-~~~~~~~~Iidg~~~~~~~~~~-----l~--~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~  173 (251)
                      +      +. .+..+..+|.|.|..+-.-...     ..  ..+......||++|+|++|++++.+|...+.      +.
T Consensus        86 R~~~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~------~~  159 (220)
T PLN02924         86 RWEKRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG------ER  159 (220)
T ss_pred             HHHHHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc------cc
Confidence            1      11 1123345788988664221110     11  1122233579999999999999999954210      00


Q ss_pred             ecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          174 YHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       174 ~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                              .+ . ..+.+|+...+...       .. ..++.||++.++++|+++|.+.|.
T Consensus       160 ------------------------~E-~-~~~~~rv~~~Y~~l-------a~-~~~~vIDa~~sieeV~~~I~~~I~  202 (220)
T PLN02924        160 ------------------------YE-K-LEFQKKVAKRFQTL-------RD-SSWKIIDASQSIEEVEKKIREVVL  202 (220)
T ss_pred             ------------------------cc-c-HHHHHHHHHHHHHH-------hh-cCEEEECCCCCHHHHHHHHHHHHH
Confidence                                    01 1 22233332222111       11 357889999999999999988774

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.60  E-value=1.2e-14  Score=117.28  Aligned_cols=163  Identities=15%  Similarity=0.139  Sum_probs=104.7

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHH---------------
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG---------------  103 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~---------------  103 (251)
                      +|+|+|++||||||+++.|++ +|+++++.|.+.+..+.++++....+.+.+..+...+++.+.+               
T Consensus         3 ~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~~   81 (200)
T PRK14734          3 RIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQTA   81 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHHH
Confidence            456679999999999999998 7999999999999999988888888887776544333211111               


Q ss_pred             --------HH----HHHHcCC-CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025529          104 --------II----DEAMKKP-SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS  170 (251)
Q Consensus       104 --------ll----~~~l~~~-~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~  170 (251)
                              .+    ...+... ..+..+++-..|.....         .....+|.+|++++|.++..+|+..|+     
T Consensus        82 ~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~---------g~~~~~D~vi~V~a~~e~ri~Rl~~R~-----  147 (200)
T PRK14734         82 LLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEK---------GLDRKMDLVVVVDVDVEERVRRLVEKR-----  147 (200)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEc---------CccccCCeEEEEECCHHHHHHHHHHcC-----
Confidence                    11    1111100 01112222222221110         011357999999999999999999873     


Q ss_pred             CceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          171 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       171 ~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                                  +.+.+.+.+|+..+.....    ....  --+.|+++.+++++.+++...++
T Consensus       148 ----------------------------g~s~e~~~~ri~~Q~~~~~----k~~~--ad~vI~N~g~~e~l~~~v~~~~~  193 (200)
T PRK14734        148 ----------------------------GLDEDDARRRIAAQIPDDV----RLKA--ADIVVDNNGTREQLLAQVDGLIA  193 (200)
T ss_pred             ----------------------------CCCHHHHHHHHHhcCCHHH----HHHh--CCEEEECcCCHHHHHHHHHHHHH
Confidence                                        3456788888876544321    1111  12468889999999988887653

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=99.59  E-value=2.1e-14  Score=112.29  Aligned_cols=161  Identities=23%  Similarity=0.227  Sum_probs=111.6

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHH--------------
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGI--------------  104 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l--------------  104 (251)
                      ||+++|+.||||||+++.|. .+|+++|++|.+.|+.+.++++.+..+.+.+......++..+++-              
T Consensus         3 iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r~   81 (225)
T KOG3220|consen    3 IVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKRQ   81 (225)
T ss_pred             EEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHHH
Confidence            68899999999999999998 789999999999999999999999999988876655444333221              


Q ss_pred             --------------HHHHHcCCCCCCceE-EeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025529          105 --------------IDEAMKKPSCQKGFI-LDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS  169 (251)
Q Consensus       105 --------------l~~~l~~~~~~~~~I-idg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~  169 (251)
                                    +.+.....-.+..+| +| .|...+-  .+.       .....+|.+.|+.++..+|+..|     
T Consensus        82 ~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~--~~~-------~~~~~tvvV~cd~~~Ql~Rl~~R-----  146 (225)
T KOG3220|consen   82 ALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA--KLL-------KICHKTVVVTCDEELQLERLVER-----  146 (225)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH--hHH-------hheeeEEEEEECcHHHHHHHHHh-----
Confidence                          111111111122232 33 3332221  111       23457888999999999999987     


Q ss_pred             CCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          170 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                                                  ++.+.+..++|++..    .++.+..+..  =++||++++++++.++|..++
T Consensus       147 ----------------------------d~lse~dAe~Rl~sQ----mp~~~k~~~a--~~Vi~Nng~~~~l~~qv~~v~  192 (225)
T KOG3220|consen  147 ----------------------------DELSEEDAENRLQSQ----MPLEKKCELA--DVVIDNNGSLEDLYEQVEKVL  192 (225)
T ss_pred             ----------------------------ccccHHHHHHHHHhc----CCHHHHHHhh--heeecCCCChHHHHHHHHHHH
Confidence                                        356778888888763    4444444432  246899999999999887654

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.59  E-value=1.4e-13  Score=108.33  Aligned_cols=164  Identities=21%  Similarity=0.291  Sum_probs=90.3

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS  113 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~  113 (251)
                      +|+++     |++||||||+++.|++++|+++++.|.++....      +..+.+++....   ...+.+.-...+....
T Consensus         4 ~i~~~-----G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~------g~~~~~~~~~~g---~~~~~~~e~~~~~~~~   69 (171)
T PRK03731          4 PLFLV-----GARGCGKTTVGMALAQALGYRFVDTDQWLQSTS------NMTVAEIVEREG---WAGFRARESAALEAVT   69 (171)
T ss_pred             eEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh------CCCHHHHHHHHC---HHHHHHHHHHHHHHhc
Confidence            57777     999999999999999999999999998876532      222222222111   1111111111121111


Q ss_pred             CCCceEEe-CC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529          114 CQKGFILD-GF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT  190 (251)
Q Consensus       114 ~~~~~Iid-g~--~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~  190 (251)
                       ....|+. |.  +.......    ++.    ..+++|||++|++.+.+|+..|..+.  ++       |..       .
T Consensus        70 -~~~~vi~~ggg~vl~~~~~~----~l~----~~~~~v~l~~~~~~~~~Rl~~r~~~~--~r-------p~~-------~  124 (171)
T PRK03731         70 -APSTVIATGGGIILTEENRH----FMR----NNGIVIYLCAPVSVLANRLEANPEED--QR-------PTL-------T  124 (171)
T ss_pred             -CCCeEEECCCCccCCHHHHH----HHH----hCCEEEEEECCHHHHHHHHccccccc--cC-------CcC-------C
Confidence             2234443 32  22222222    221    23579999999999999998763110  00       000       0


Q ss_pred             CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529          191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA  251 (251)
Q Consensus       191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~  251 (251)
                      +..   ..++..+.+++|...|...            ..+.||++.++++++++|.+.|.+
T Consensus       125 ~~~---~~~~~~~~~~~r~~~y~~~------------a~~~Id~~~~~e~v~~~i~~~l~~  170 (171)
T PRK03731        125 GKP---ISEEVAEVLAEREALYREV------------AHHIIDATQPPSQVVSEILSALAQ  170 (171)
T ss_pred             CCC---hHHHHHHHHHHHHHHHHHh------------CCEEEcCCCCHHHHHHHHHHHHhc
Confidence            000   0011123333333333221            126889999999999999988753

>PRK13948 shikimate kinase; Provisional

Probab=99.59  E-value=7.6e-14  Score=110.59  Aligned_cols=110  Identities=15%  Similarity=0.126  Sum_probs=69.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCC-CcCHHHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-LVSDDLVVGIIDEA  108 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~ll~~~  108 (251)
                      +++..|+++     |++||||||+++.|++++|.+++++|.++++..      |..+.+++...+ ....+.-..++...
T Consensus         8 ~~~~~I~Li-----G~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~------g~si~~if~~~Ge~~fR~~E~~~l~~l   76 (182)
T PRK13948          8 RPVTWVALA-----GFMGTGKSRIGWELSRALMLHFIDTDRYIERVT------GKSIPEIFRHLGEAYFRRCEAEVVRRL   76 (182)
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH------hCCHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            466789999     999999999999999999999999998887743      344445444322 11122222333332


Q ss_pred             HcCCCCCCceEEe-C--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529          109 MKKPSCQKGFILD-G--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT  162 (251)
Q Consensus       109 l~~~~~~~~~Iid-g--~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~  162 (251)
                      +.    ..+.|+. |  .+........+.    .    ...+|||++|.+++.+|+.
T Consensus        77 ~~----~~~~VIa~GgG~v~~~~n~~~l~----~----~g~vV~L~~~~e~l~~Rl~  121 (182)
T PRK13948         77 TR----LDYAVISLGGGTFMHEENRRKLL----S----RGPVVVLWASPETIYERTR  121 (182)
T ss_pred             Hh----cCCeEEECCCcEEcCHHHHHHHH----c----CCeEEEEECCHHHHHHHhc
Confidence            21    1234443 2  222232323222    1    2468899999999999995

>PRK08233 hypothetical protein; Provisional

Probab=99.58  E-value=1.5e-14  Score=114.73  Aligned_cols=164  Identities=13%  Similarity=0.160  Sum_probs=86.2

Q ss_pred             cccCCCCCChhHHHHHHHHHhC-CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC--CCCc
Q 025529           41 WLAGPPGSGKGTQSPIIKDEYC-LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS--CQKG  117 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~~~~-~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~--~~~~  117 (251)
                      +|+|+|||||||+|+.|++.++ ..++..|.. ...     ............+... .......+...+....  ....
T Consensus         7 ~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~-~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~   79 (182)
T PRK08233          7 TIAAVSGGGKTTLTERLTHKLKNSKALYFDRY-DFD-----NCPEDICKWIDKGANY-SEWVLTPLIKDIQELIAKSNVD   79 (182)
T ss_pred             EEECCCCCCHHHHHHHHHhhCCCCceEEECCE-Ecc-----cCchhhhhhhhccCCh-hhhhhHHHHHHHHHHHcCCCce
Confidence            3449999999999999999996 333333322 110     0011122222222222 1111122222222111  1124


Q ss_pred             eEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccC
Q 025529          118 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR  197 (251)
Q Consensus       118 ~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r  197 (251)
                      +|+..+|....... +.       ..+|.+|+|++|.+++++|+..|...                              
T Consensus        80 ~vivd~~~~~~~~~-~~-------~~~d~~i~l~~~~~~~~~R~~~R~~~------------------------------  121 (182)
T PRK08233         80 YIIVDYPFAYLNSE-MR-------QFIDVTIFIDTPLDIAMARRILRDFK------------------------------  121 (182)
T ss_pred             EEEEeeehhhccHH-HH-------HHcCEEEEEcCCHHHHHHHHHHHHhh------------------------------
Confidence            55544554322111 11       23689999999999999997776310                              


Q ss_pred             CCCcHHHHHHHHHHHHhccHHHH-HHHhh--CCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          198 KDDTAAVLKSRLEAFHKQTEPVI-DYYSK--KGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       198 ~~~~~~~~~~r~~~y~~~~~~~~-~~~~~--~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                       +.+.+.+.+++..|.....+.+ +++..  ....+.||++.++++++++|.+.|+
T Consensus       122 -~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~  176 (182)
T PRK08233        122 -EDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELY  176 (182)
T ss_pred             -hccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHH
Confidence             1111234445555554433322 22221  1245679999999999999998875

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.58  E-value=1.9e-13  Score=107.38  Aligned_cols=111  Identities=23%  Similarity=0.270  Sum_probs=68.7

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC-CCCc
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-CQKG  117 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~-~~~~  117 (251)
                      +|+|+|++||||||+|+.|++.+|+++++.+++++........-...+.........     +...+...+.... ....
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~   76 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPE-----IDKKIDRRIHEIALKEKN   76 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcH-----HHHHHHHHHHHHHhcCCC
Confidence            355569999999999999999999999999988776543221111111112111211     1222222222221 2357


Q ss_pred             eEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          118 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       118 ~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      +|++|.....        .+   ...++++|+|++|.+.+.+|+..|.
T Consensus        77 ~Vi~g~~~~~--------~~---~~~~d~~v~v~a~~~~r~~R~~~R~  113 (171)
T TIGR02173        77 VVLESRLAGW--------IV---REYADVKIWLKAPLEVRARRIAKRE  113 (171)
T ss_pred             EEEEecccce--------ee---cCCcCEEEEEECCHHHHHHHHHHcc
Confidence            8888864321        01   1346789999999999999999874

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.58  E-value=2.4e-14  Score=114.81  Aligned_cols=162  Identities=20%  Similarity=0.221  Sum_probs=102.8

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHH-------------------
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD-------------------   99 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~-------------------   99 (251)
                      +|+|+|.|||||||+++.|++ +|++++++|++.|+.+.++++....+.+.+.....-++.                   
T Consensus         4 iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~~~   82 (201)
T COG0237           4 IIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEARL   82 (201)
T ss_pred             EEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHHHH
Confidence            466779999999999999999 999999999999999998877776666665533321111                   


Q ss_pred             ----HHHHHHHHHHc-CCC-CCCceEEeCCCCCHHHHHHHHHHHHhcC-CCcCEEEEEecCHHHHHHHHhcCcCCCCCCc
Q 025529          100 ----LVVGIIDEAMK-KPS-CQKGFILDGFPRTEVQAQKLDEMLEKQG-KKVDKVLNFAIDDAVLEERITGRWIHPSSGR  172 (251)
Q Consensus       100 ----~~~~ll~~~l~-~~~-~~~~~Iidg~~~~~~~~~~l~~~~~~~~-~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~  172 (251)
                          +++.++...+. ..+ ....+++-..|...          ...+ ..+|.+|+++||++..++|+.+|.       
T Consensus        83 ~Le~i~hPli~~~~~~~~~~~~~~~~~~eiplL~----------e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~-------  145 (201)
T COG0237          83 KLEKILHPLIRAEIKVVIDGARSPYVVLEIPLLF----------EAGGEKYFDKVIVVYAPPEIRLERLMKRD-------  145 (201)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhhCCceEEEchHHH----------hccccccCCEEEEEECCHHHHHHHHHhcC-------
Confidence                11111112110 000 01112222222211          1111 237899999999999999999883       


Q ss_pred             eecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          173 TYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       173 ~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                                +.+.+....|+.........    +...+  +.++++.+++.+.++|.+.+.
T Consensus       146 --------------------------~~~~e~~~~~~~~Q~~~~ek----~~~ad--~vi~n~~~i~~l~~~i~~~~~  191 (201)
T COG0237         146 --------------------------GLDEEDAEARLASQRDLEEK----LALAD--VVIDNDGSIENLLEQIEKLLK  191 (201)
T ss_pred             --------------------------CCCHHHHHHHHHhcCCHHHH----HhhcC--ChhhcCCCHHHHHHHHHHHHH
Confidence                                      45666777777654333332    22211  357888999999998887653

>PRK00625 shikimate kinase; Provisional

Probab=99.57  E-value=1.1e-13  Score=108.97  Aligned_cols=117  Identities=14%  Similarity=0.098  Sum_probs=68.9

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+++     |+|||||||+++.|+++++++++++|+++++.....  ....+.+++...+   ...+...-...+...
T Consensus         1 ~~I~Li-----G~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~G---e~~fr~~E~~~l~~l   70 (173)
T PRK00625          1 MQIFLC-----GLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYG---EEGFCREEFLALTSL   70 (173)
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHC---HHHHHHHHHHHHHHh
Confidence            467777     999999999999999999999999999988754321  1113444443222   111111111122222


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      .....+|..|...... .+.+. .+.    ....+|||++|.+++.+|+..|.
T Consensus        71 ~~~~~VIs~GGg~~~~-~e~~~-~l~----~~~~Vv~L~~~~e~l~~Rl~~R~  117 (173)
T PRK00625         71 PVIPSIVALGGGTLMI-EPSYA-HIR----NRGLLVLLSLPIATIYQRLQKRG  117 (173)
T ss_pred             ccCCeEEECCCCccCC-HHHHH-HHh----cCCEEEEEECCHHHHHHHHhcCC
Confidence            2223344444322211 12222 121    12579999999999999999873

>PLN02422 dephospho-CoA kinase

Probab=99.57  E-value=7.4e-14  Score=114.26  Aligned_cols=161  Identities=20%  Similarity=0.151  Sum_probs=101.9

Q ss_pred             ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHH---------------
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDD---------------   99 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~---------------   99 (251)
                      |+|+|++||||||+++.|+ ++|++++++|++.++.+.++++....+.+.+...     +.+...               
T Consensus         4 igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~~   82 (232)
T PLN02422          4 VGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQL   82 (232)
T ss_pred             EEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHHH
Confidence            5566999999999999999 5899999999999999998877666666555322     222221               


Q ss_pred             ---HHHHHHHHHHc----CC--CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025529          100 ---LVVGIIDEAMK----KP--SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS  170 (251)
Q Consensus       100 ---~~~~ll~~~l~----~~--~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~  170 (251)
                         +++..+...+.    ..  .....+++| .|...+.         +....+|.+|++++|.++..+|+..|+     
T Consensus        83 Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ipLL~E~---------~~~~~~D~vI~V~a~~e~ri~RL~~R~-----  147 (232)
T PLN02422         83 LNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IPLLFET---------KMDKWTKPVVVVWVDPETQLERLMARD-----  147 (232)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-ehhhhhc---------chhhhCCEEEEEECCHHHHHHHHHHcC-----
Confidence               12222222111    11  111233344 3433221         111357999999999999999999884     


Q ss_pred             CceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          171 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       171 ~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                                  +.+.+.+.+|++....    ....... .. +.|+.+++.+++..++.+.++
T Consensus       148 ----------------------------g~s~eea~~Ri~~Q~~----~eek~~~-AD-~VI~N~gs~e~L~~qv~~ll~  193 (232)
T PLN02422        148 ----------------------------GLSEEQARNRINAQMP----LDWKRSK-AD-IVIDNSGSLEDLKQQFQKVLE  193 (232)
T ss_pred             ----------------------------CCCHHHHHHHHHHcCC----hhHHHhh-CC-EEEECCCCHHHHHHHHHHHHH
Confidence                                        3455777888744221    1111111 12 467788899999988887654

>PRK13947 shikimate kinase; Provisional

Probab=99.57  E-value=1.2e-13  Score=108.62  Aligned_cols=109  Identities=17%  Similarity=0.228  Sum_probs=65.1

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCC-cCHHHHHHHHHHHHcCC
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL-VSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~ll~~~l~~~  112 (251)
                      +|+++     |+|||||||+++.|++.+|+++++.|.+++...      |..+.+++..... ........++.. +.  
T Consensus         3 ~I~l~-----G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~------g~~~~~~~~~~ge~~~~~~e~~~~~~-l~--   68 (171)
T PRK13947          3 NIVLI-----GFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT------GMTVAEIFEKDGEVRFRSEEKLLVKK-LA--   68 (171)
T ss_pred             eEEEE-----cCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc------CCcHHHHHHHhChHHHHHHHHHHHHH-Hh--
Confidence            47888     999999999999999999999999998876641      2233333332111 111111122222 21  


Q ss_pred             CCCCceEEe-C--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          113 SCQKGFILD-G--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       113 ~~~~~~Iid-g--~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                       .....|+. |  ++........+    ..    ...+|||+++++.+.+|+..|.
T Consensus        69 -~~~~~vi~~g~g~vl~~~~~~~l----~~----~~~vv~L~~~~~~l~~Rl~~r~  115 (171)
T PRK13947         69 -RLKNLVIATGGGVVLNPENVVQL----RK----NGVVICLKARPEVILRRVGKKK  115 (171)
T ss_pred             -hcCCeEEECCCCCcCCHHHHHHH----Hh----CCEEEEEECCHHHHHHHhcCCC
Confidence             12234432 2  22333222222    22    2479999999999999998663

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.57  E-value=3.5e-14  Score=121.65  Aligned_cols=168  Identities=14%  Similarity=0.133  Sum_probs=107.3

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh-CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK  111 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~  111 (251)
                      +.|++.     |+|||||||+|+.|++++ ++.+++.|++. ..+......+..  .+...+...-.......+...+  
T Consensus         3 ~liil~-----G~pGSGKSTla~~L~~~~~~~~~l~~D~~r-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l--   72 (300)
T PHA02530          3 KIILTV-----GVPGSGKSTWAREFAAKNPKAVNVNRDDLR-QSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAAL--   72 (300)
T ss_pred             EEEEEE-----cCCCCCHHHHHHHHHHHCCCCEEEeccHHH-HHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHH--
Confidence            356666     999999999999999999 89999997754 333221111110  0000000000111222222222  


Q ss_pred             CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCC
Q 025529          112 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTG  191 (251)
Q Consensus       112 ~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~  191 (251)
                       ..+..+|+|+++....+...+..+....+..+ .+|+|++|.+++.+|+..|..+.                       
T Consensus        73 -~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~-~~v~l~~~~e~~~~R~~~R~~~~-----------------------  127 (300)
T PHA02530         73 -KSGKSVIISDTNLNPERRRKWKELAKELGAEF-EEKVFDVPVEELVKRNRKRGERA-----------------------  127 (300)
T ss_pred             -HcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeE-EEEEeCCCHHHHHHHHHccCcCC-----------------------
Confidence             23457999999999888888877766665544 36889999999999999984221                       


Q ss_pred             CCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhH
Q 025529          192 EPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQE  240 (251)
Q Consensus       192 ~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~ee  240 (251)
                           -+.+..+...+|++.|.....++...+.....++.+|.+.++.+
T Consensus       128 -----~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~  171 (300)
T PHA02530        128 -----VPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK  171 (300)
T ss_pred             -----CCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence                 02333344458888888887788777765556777887777665

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.57  E-value=2.6e-13  Score=109.76  Aligned_cols=175  Identities=19%  Similarity=0.197  Sum_probs=97.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCC---ceechhHHHHHHHHcCCchHHHHHHHHHc--CCCcCHHHHHH--
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL---CHLATGDMLRAAVAAKTPLGIKAKEAMDK--GELVSDDLVVG--  103 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~---~~i~~~~li~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~--  103 (251)
                      +++.|+|+     |++||||||+++.|++.++.   .++..     .+ +.++..|..+++.+..  ....+......  
T Consensus         2 ~~~~I~ie-----G~~gsGKsT~~~~L~~~l~~~~~~~~~~-----~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (205)
T PRK00698          2 RGMFITIE-----GIDGAGKSTQIELLKELLEQQGRDVVFT-----RE-PGGTPLGEKLRELLLDPNEEMDDKTELLLFY   70 (205)
T ss_pred             CceEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCceeEe-----eC-CCCChHHHHHHHHHhccccCCCHHHHHHHHH
Confidence            46788999     99999999999999998732   22211     11 1134566677776653  22221111111  


Q ss_pred             -----HHHHHHcC-CCCCCceEEeCCCCCHH------------HHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          104 -----IIDEAMKK-PSCQKGFILDGFPRTEV------------QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       104 -----ll~~~l~~-~~~~~~~Iidg~~~~~~------------~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                           .+...+.. ...+..+|+|.++.+..            ....+...+. ....||++|+|++|++++.+|+..|.
T Consensus        71 ~~r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~-~~~~pd~~i~l~~~~~~~~~Rl~~R~  149 (205)
T PRK00698         71 AARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFAL-GGFRPDLTLYLDVPPEVGLARIRARG  149 (205)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence                 11111111 12234678887654321            1112222221 22569999999999999999999884


Q ss_pred             CCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHH
Q 025529          166 IHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV  245 (251)
Q Consensus       166 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i  245 (251)
                      ..   .                         +.+.....+.+++..++..   +.+.  ....++.||++.++++++++|
T Consensus       150 ~~---~-------------------------~~~~~~~~~~~~~~~~y~~---~~~~--~~~~~~~Id~~~~~e~v~~~i  196 (205)
T PRK00698        150 EL---D-------------------------RIEQEGLDFFERVREGYLE---LAEK--EPERIVVIDASQSLEEVHEDI  196 (205)
T ss_pred             Cc---c-------------------------hhhhhhHHHHHHHHHHHHH---HHHh--CCCeEEEEeCCCCHHHHHHHH
Confidence            10   0                         0011112333444322221   1111  123678999999999999999


Q ss_pred             HHHhc
Q 025529          246 QKALS  250 (251)
Q Consensus       246 ~~~l~  250 (251)
                      .+.|.
T Consensus       197 ~~~i~  201 (205)
T PRK00698        197 LAVIK  201 (205)
T ss_pred             HHHHH
Confidence            88774

>TIGR00152 dephospho-CoA kinase

Probab=99.56  E-value=1.9e-14  Score=115.14  Aligned_cols=160  Identities=16%  Similarity=0.204  Sum_probs=100.6

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-----CCCcCHHHHH-----------
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-----GELVSDDLVV-----------  102 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~-----------  102 (251)
                      +|+|+|++||||||+++.|++..|++++++|.+.++.+.++.+....+.+.+..     .+.+....+.           
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~   80 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK   80 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence            467779999999999999999877999999999999988887766666555431     2222211111           


Q ss_pred             -----------HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCC
Q 025529          103 -----------GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG  171 (251)
Q Consensus       103 -----------~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~  171 (251)
                                 ..+...+........+|+-..|.....  .+.       ..+|.++++++|.+++.+|+..|.      
T Consensus        81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~--~~~-------~~~D~vv~V~~~~~~~~~Rl~~R~------  145 (188)
T TIGR00152        81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFEN--KLR-------SLCDRVIVVDVSPQLQLERLMQRD------  145 (188)
T ss_pred             HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhC--CcH-------HhCCEEEEEECCHHHHHHHHHHcC------
Confidence                       111222222211112444333432221  111       346899999999999999999883      


Q ss_pred             ceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHH
Q 025529          172 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQ  246 (251)
Q Consensus       172 ~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~  246 (251)
                                                 +.+.+.+.+|+......    ...... .. +.|+++.+++++..+|.
T Consensus       146 ---------------------------~~s~~~~~~r~~~q~~~----~~~~~~-ad-~vI~N~~~~e~l~~~~~  187 (188)
T TIGR00152       146 ---------------------------NLTEEEVQKRLASQMDI----EERLAR-AD-DVIDNSATLADLVKQLE  187 (188)
T ss_pred             ---------------------------CCCHHHHHHHHHhcCCH----HHHHHh-CC-EEEECCCCHHHHHHHHh
Confidence                                       44567788887764221    111111 12 45678899999988875

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.56  E-value=1.5e-13  Score=108.33  Aligned_cols=163  Identities=17%  Similarity=0.262  Sum_probs=89.8

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHc
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~ll~~~l~  110 (251)
                      .++|+++     |++||||||+++.|++.+++++++.|..+.+...  ..    +...+.. |.......-.+++.. +.
T Consensus         4 ~~~I~li-----G~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g--~~----i~~~~~~~g~~~fr~~e~~~l~~-l~   71 (172)
T PRK05057          4 KRNIFLV-----GPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--AD----IGWVFDVEGEEGFRDREEKVINE-LT   71 (172)
T ss_pred             CCEEEEE-----CCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC--cC----HhHHHHHhCHHHHHHHHHHHHHH-HH
Confidence            4579999     9999999999999999999999999987655321  11    1122211 111001111222222 21


Q ss_pred             CCCCCCceEEeC-C--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCC
Q 025529          111 KPSCQKGFILDG-F--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVD  187 (251)
Q Consensus       111 ~~~~~~~~Iidg-~--~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~  187 (251)
                         ...++++.. +  +........    +..    .+.+|||++|.+++.+|+..+...+                   
T Consensus        72 ---~~~~~vi~~ggg~v~~~~~~~~----l~~----~~~vv~L~~~~e~~~~Ri~~~~~rP-------------------  121 (172)
T PRK05057         72 ---EKQGIVLATGGGSVKSRETRNR----LSA----RGVVVYLETTIEKQLARTQRDKKRP-------------------  121 (172)
T ss_pred             ---hCCCEEEEcCCchhCCHHHHHH----HHh----CCEEEEEeCCHHHHHHHHhCCCCCC-------------------
Confidence               123455532 2  122222222    222    2579999999999999997553111                   


Q ss_pred             CCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhcC
Q 025529          188 DVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALSA  251 (251)
Q Consensus       188 ~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~~  251 (251)
                             ........    ..+..++....++++.+++    +.||++ .+++++.+.|.+.+++
T Consensus       122 -------~~~~~~~~----~~~~~l~~~R~~~Y~~~Ad----~~idt~~~s~~ei~~~i~~~l~~  171 (172)
T PRK05057        122 -------LLQVDDPR----EVLEALANERNPLYEEIAD----VTIRTDDQSAKVVANQIIHMLES  171 (172)
T ss_pred             -------CCCCCCHH----HHHHHHHHHHHHHHHhhCC----EEEECCCCCHHHHHHHHHHHHhh
Confidence                   00111111    1123333333444333322    456764 8999999999888753

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.56  E-value=6.9e-14  Score=113.57  Aligned_cols=162  Identities=14%  Similarity=0.139  Sum_probs=100.2

Q ss_pred             ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc--------CC-CcCHHHH---------
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK--------GE-LVSDDLV---------  101 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~--------~~-~~~~~~~---------  101 (251)
                      |+|+|++||||||+++.|.+ +|+++++.|.+.+....++......+...+..        +. .+....+         
T Consensus         8 igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf~~~~   86 (208)
T PRK14731          8 VGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVFSDPE   86 (208)
T ss_pred             EEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHhCCHH
Confidence            34459999999999999997 89999999998888766655444444433321        11 0111111         


Q ss_pred             ---------HHHH----HHHHcCC-CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCC
Q 025529          102 ---------VGII----DEAMKKP-SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH  167 (251)
Q Consensus       102 ---------~~ll----~~~l~~~-~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~  167 (251)
                               +..+    ...+... .....+++-+.|...+..         ....+|.+|++++|.+++.+|+..|.  
T Consensus        87 ~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~---------~~~~~d~ii~V~a~~e~~~~Rl~~R~--  155 (208)
T PRK14731         87 KLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESG---------GDAGLDFIVVVAADTELRLERAVQRG--  155 (208)
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecC---------chhcCCeEEEEECCHHHHHHHHHHcC--
Confidence                     1111    1111111 112234443344322211         11357999999999999999999884  


Q ss_pred             CCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHH
Q 025529          168 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQK  247 (251)
Q Consensus       168 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~  247 (251)
                                                     ..+.+.+++|+..+......+ ++.    . +.|+++.+++++.++|.+
T Consensus       156 -------------------------------~~s~e~~~~Ri~~q~~~~~~~-~~a----d-~vI~N~g~~e~l~~~i~~  198 (208)
T PRK14731        156 -------------------------------MGSREEIRRRIAAQWPQEKLI-ERA----D-YVIYNNGTLDELKAQTEQ  198 (208)
T ss_pred             -------------------------------CCCHHHHHHHHHHcCChHHHH-HhC----C-EEEECCCCHHHHHHHHHH
Confidence                                           335678899987765544433 221    2 457888999999999987


Q ss_pred             Hhc
Q 025529          248 ALS  250 (251)
Q Consensus       248 ~l~  250 (251)
                      .++
T Consensus       199 ~~~  201 (208)
T PRK14731        199 LYQ  201 (208)
T ss_pred             HHH
Confidence            764

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.55  E-value=1.9e-13  Score=107.60  Aligned_cols=115  Identities=17%  Similarity=0.250  Sum_probs=66.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHH-cCCCcCHHHHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAM  109 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~ll~~~l  109 (251)
                      .++.|++.     |+|||||||+|+.|++++|+++++.|.+++....  .+.    .+.+. .+..........++....
T Consensus         3 ~~~~i~l~-----G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g--~~~----~~~~~~~g~~~~~~~~~~~~~~l~   71 (175)
T PRK00131          3 KGPNIVLI-----GFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG--KSI----PEIFEEEGEAAFRELEEEVLAELL   71 (175)
T ss_pred             CCCeEEEE-----cCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CCH----HHHHHHHCHHHHHHHHHHHHHHHH
Confidence            56678888     9999999999999999999999999988765322  121    12111 111111111222232222


Q ss_pred             cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ..   ...+|..|..... ... ....+.    ....+|||++|.+.+.+|+..+.
T Consensus        72 ~~---~~~vi~~g~~~~~-~~~-~r~~l~----~~~~~v~l~~~~~~~~~R~~~~~  118 (175)
T PRK00131         72 AR---HNLVISTGGGAVL-REE-NRALLR----ERGTVVYLDASFEELLRRLRRDR  118 (175)
T ss_pred             hc---CCCEEEeCCCEee-cHH-HHHHHH----hCCEEEEEECCHHHHHHHhcCCC
Confidence            21   1234443321111 111 112221    12478999999999999998763

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.55  E-value=2e-13  Score=104.79  Aligned_cols=154  Identities=19%  Similarity=0.312  Sum_probs=94.4

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|++.     |.||+||||+|+.|+ ++|+.+++..+++.+.     .+.....+ ......+..+.+...+...+   
T Consensus         1 m~I~IT-----GTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~-----~~~~~~de-~r~s~~vD~d~~~~~le~~~---   65 (180)
T COG1936           1 MLIAIT-----GTPGVGKTTVCKLLR-ELGYKVIELNELAKEN-----GLYTEYDE-LRKSVIVDVDKLRKRLEELL---   65 (180)
T ss_pred             CeEEEe-----CCCCCchHHHHHHHH-HhCCceeeHHHHHHhc-----CCeeccCC-ccceEEeeHHHHHHHHHHHh---
Confidence            456666     999999999999999 8999999998876552     11111000 00011122223333333322   


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                       ...+.|+|++..         .++    ..+|++|.|.++++.+.+||+.|+-.                         
T Consensus        66 -~~~~~Ivd~H~~---------hl~----~~~dlVvVLR~~p~~L~~RLk~RGy~-------------------------  106 (180)
T COG1936          66 -REGSGIVDSHLS---------HLL----PDCDLVVVLRADPEVLYERLKGRGYS-------------------------  106 (180)
T ss_pred             -ccCCeEeechhh---------hcC----CCCCEEEEEcCCHHHHHHHHHHcCCC-------------------------
Confidence             234688887632         111    24899999999999999999998410                         


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcC-CCChhHHHHHHHHHhc
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHA-EKPPQEVTSEVQKALS  250 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~-~~~~eev~~~i~~~l~  250 (251)
                           ++.-.++++..+..  .......+++   ..+++||. +.+++++++.|..++.
T Consensus       107 -----~eKI~ENveAEi~~--vi~~EA~E~~---~~v~evdtt~~s~ee~~~~i~~ii~  155 (180)
T COG1936         107 -----EEKILENVEAEILD--VILIEAVERF---EAVIEVDTTNRSPEEVAEEIIDIIG  155 (180)
T ss_pred             -----HHHHHHHHHHHHHH--HHHHHHHHhc---CceEEEECCCCCHHHHHHHHHHHHc
Confidence                 11122344433322  1222233344   35788888 5999999999999875

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.55  E-value=4e-13  Score=107.90  Aligned_cols=123  Identities=23%  Similarity=0.228  Sum_probs=67.3

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCC---ceechhHHHHHHHHcCCchHHHHHHHHHcCC--CcCHHHHH----
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL---CHLATGDMLRAAVAAKTPLGIKAKEAMDKGE--LVSDDLVV----  102 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~---~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~----  102 (251)
                      ++.|+|+     |++||||||+++.|++.++.   .++-+.      .+..++.+..+++.+..+.  ........    
T Consensus         3 g~~Ivie-----G~~GsGKsT~~~~L~~~l~~~g~~v~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~   71 (195)
T TIGR00041         3 GMFIVIE-----GIDGAGKTTQANLLKKLLQENGYDVLFTR------EPGGTPIGEKIRELLLNENDEPLTDKAEALLFA   71 (195)
T ss_pred             ceEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCChHHHHHHHHHcCCCccCCCHHHHHHHHH
Confidence            6788999     99999999999999999842   232110      1123456666666644322  12211110    


Q ss_pred             ----HHHHHHHcC-CCCCCceEEeCCCCCHHH---------HHHHHHHHHhcCC-CcCEEEEEecCHHHHHHHHhcCc
Q 025529          103 ----GIIDEAMKK-PSCQKGFILDGFPRTEVQ---------AQKLDEMLEKQGK-KVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       103 ----~ll~~~l~~-~~~~~~~Iidg~~~~~~~---------~~~l~~~~~~~~~-~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                          ..+...+.. ...+..+|+|.+..+-.-         ...+..+...... .|+++|+|++|++++.+|+..|.
T Consensus        72 ~~r~~~~~~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~  149 (195)
T TIGR00041        72 ADRHEHLEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRG  149 (195)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence                111111111 112234667865332210         1111111111112 48999999999999999999874

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.54  E-value=7.9e-13  Score=106.12  Aligned_cols=174  Identities=20%  Similarity=0.237  Sum_probs=96.0

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcCC--CcCHHHH------
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE--LVSDDLV------  101 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~------  101 (251)
                      |.|+|+     |++||||||+++.|++.+   |+.++.+..      ...+..+..+++++....  .......      
T Consensus         1 ~~I~ie-----G~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (200)
T cd01672           1 MFIVFE-----GIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAA   69 (200)
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHH
Confidence            356667     999999999999999998   555544321      112334555666555331  1111110      


Q ss_pred             --HHHHHHHHcC-CCCCCceEEeCCCCCHH------------HHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025529          102 --VGIIDEAMKK-PSCQKGFILDGFPRTEV------------QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI  166 (251)
Q Consensus       102 --~~ll~~~l~~-~~~~~~~Iidg~~~~~~------------~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~  166 (251)
                        ...+.+.+.. ...+..+|+|.++.+..            ....+.... .....|+.+|+|++|++++.+|+..|..
T Consensus        70 ~r~~~~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~i~l~~~~~~~~~R~~~R~~  148 (200)
T cd01672          70 DRAQHVEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLA-TGGLKPDLTILLDIDPEVGLARIEARGR  148 (200)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHH-hCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence              0111111111 12334677887654321            112222221 2234789999999999999999998852


Q ss_pred             CCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHH
Q 025529          167 HPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQ  246 (251)
Q Consensus       167 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~  246 (251)
                      ..                            ........+.+++..++.   ++...+  ...++.||++.++++++++|.
T Consensus       149 ~~----------------------------~~~~~~~~~~~~~~~~y~---~~~~~~--~~~~~~id~~~~~e~i~~~i~  195 (200)
T cd01672         149 DD----------------------------RDEQEGLEFHERVREGYL---ELAAQE--PERIIVIDASQPLEEVLAEIL  195 (200)
T ss_pred             cc----------------------------hhhhhhHHHHHHHHHHHH---HHHHhC--CCeEEEEeCCCCHHHHHHHHH
Confidence            10                            000111223333322211   122211  135789999999999999999


Q ss_pred             HHhcC
Q 025529          247 KALSA  251 (251)
Q Consensus       247 ~~l~~  251 (251)
                      +.|.+
T Consensus       196 ~~i~~  200 (200)
T cd01672         196 KAILE  200 (200)
T ss_pred             HHHhC
Confidence            98753

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.53  E-value=1.9e-13  Score=112.92  Aligned_cols=163  Identities=13%  Similarity=0.057  Sum_probs=103.2

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-----CCCcCHHHH------------
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-----GELVSDDLV------------  101 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~------------  101 (251)
                      +|+|+|++||||||+++.|++++|++++++|.+.++...++++....+.+.+..     .+.+....+            
T Consensus         3 iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~~   82 (244)
T PTZ00451          3 LIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQARR   82 (244)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence            577889999999999999999999999999999999888887776666655532     122222111            


Q ss_pred             ------HHHH----HHHHcC---------CC-CCC-ceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025529          102 ------VGII----DEAMKK---------PS-CQK-GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER  160 (251)
Q Consensus       102 ------~~ll----~~~l~~---------~~-~~~-~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~R  160 (251)
                            +..+    ...+..         .. .+. .+|+| .|...+..  +      ....+|.+|++.+|.++..+|
T Consensus        83 ~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~e-vPLL~E~~--~------~~~~~D~iv~V~a~~e~ri~R  153 (244)
T PTZ00451         83 ALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLD-APTLFETK--T------FTYFVSASVVVSCSEERQIER  153 (244)
T ss_pred             HHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEE-echhhccC--c------hhhcCCeEEEEECCHHHHHHH
Confidence                  1111    111110         00 112 34455 34332210  0      012469999999999999999


Q ss_pred             HhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC--CCh
Q 025529          161 ITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE--KPP  238 (251)
Q Consensus       161 l~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~--~~~  238 (251)
                      +..|.                                 +.+.+.+++|+.....    ..+... ...+ .|+.+  +++
T Consensus       154 L~~R~---------------------------------g~s~eea~~Ri~~Q~~----~~ek~~-~aD~-VI~N~~~g~~  194 (244)
T PTZ00451        154 LRKRN---------------------------------GFSKEEALQRIGSQMP----LEEKRR-LADY-IIENDSADDL  194 (244)
T ss_pred             HHHcC---------------------------------CCCHHHHHHHHHhCCC----HHHHHH-hCCE-EEECCCCCCH
Confidence            99873                                 4466788888865211    122211 1233 46667  899


Q ss_pred             hHHHHHHHHHh
Q 025529          239 QEVTSEVQKAL  249 (251)
Q Consensus       239 eev~~~i~~~l  249 (251)
                      +++..+|.+.+
T Consensus       195 ~~L~~~v~~~~  205 (244)
T PTZ00451        195 DELRGSVCDCV  205 (244)
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=99.53  E-value=4.7e-13  Score=99.94  Aligned_cols=160  Identities=21%  Similarity=0.322  Sum_probs=104.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM  109 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l  109 (251)
                      +..|+|++.     |.||+||||+|+.||+.+|+.+|.++++++..     .+.....+-. .-..+..+.+.+.+...+
T Consensus         5 r~~PNILvt-----GTPG~GKstl~~~lae~~~~~~i~isd~vkEn-----~l~~gyDE~y-~c~i~DEdkv~D~Le~~m   73 (176)
T KOG3347|consen    5 RERPNILVT-----GTPGTGKSTLAERLAEKTGLEYIEISDLVKEN-----NLYEGYDEEY-KCHILDEDKVLDELEPLM   73 (176)
T ss_pred             hcCCCEEEe-----CCCCCCchhHHHHHHHHhCCceEehhhHHhhh-----cchhcccccc-cCccccHHHHHHHHHHHH
Confidence            456789999     99999999999999999999999999988762     1111111110 113345566667776666


Q ss_pred             cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCC
Q 025529          110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV  189 (251)
Q Consensus       110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~  189 (251)
                      ..    .|.|+|-+.......           ..+|++|.|.+|.+.+..||..|.-+                      
T Consensus        74 ~~----Gg~IVDyHgCd~Fpe-----------rwfdlVvVLr~~~s~LY~RL~sRgY~----------------------  116 (176)
T KOG3347|consen   74 IE----GGNIVDYHGCDFFPE-----------RWFDLVVVLRTPNSVLYDRLKSRGYS----------------------  116 (176)
T ss_pred             hc----CCcEEeecccCccch-----------hheeEEEEEecCchHHHHHHHHcCCC----------------------
Confidence            44    578888654433222           24799999999999999999988411                      


Q ss_pred             CCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          190 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       190 ~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                              ...-.+.++..+  +........+.|+. +.++++.++.. |+....|..++
T Consensus       117 --------e~Ki~eNiecEI--fgv~~eea~eSy~~-~iV~eL~s~~~-Eem~~ni~ri~  164 (176)
T KOG3347|consen  117 --------EKKIKENIECEI--FGVVLEEARESYSP-KIVVELQSETK-EEMESNISRIL  164 (176)
T ss_pred             --------HHHHhhhcchHH--HHHHHHHHHHHcCC-cceeecCcCCH-HHHHHHHHHHH
Confidence                    000112222222  33344555666654 47888888765 77777665544

>PRK04040 adenylate kinase; Provisional

Probab=99.53  E-value=1.5e-12  Score=103.90  Aligned_cols=178  Identities=16%  Similarity=0.119  Sum_probs=101.3

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh--CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM  109 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l  109 (251)
                      ++.|++.     |+|||||||+++.|++++  ++.+++.+++++.......-..  -++.+..-.......+..+....+
T Consensus         2 ~~~i~v~-----G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~--~~d~~r~l~~~~~~~~~~~a~~~i   74 (188)
T PRK04040          2 MKVVVVT-----GVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVE--HRDEMRKLPPEEQKELQREAAERI   74 (188)
T ss_pred             CeEEEEE-----eCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCC--CHHHHhhCChhhhHHHHHHHHHHH
Confidence            4566667     999999999999999999  8999999998877654322100  011111111111111222333333


Q ss_pred             cCCCCCCceEEeCCCCCHHHHH---HHH-HHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCC
Q 025529          110 KKPSCQKGFILDGFPRTEVQAQ---KLD-EMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG  185 (251)
Q Consensus       110 ~~~~~~~~~Iidg~~~~~~~~~---~l~-~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~  185 (251)
                      ........+|+||+........   .+. +.+.  ...|+.+|+|.+|++++++|......                   
T Consensus        75 ~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~--~l~pd~ii~l~a~p~~i~~Rrl~d~~-------------------  133 (188)
T PRK04040         75 AEMAGEGPVIVDTHATIKTPAGYLPGLPEWVLE--ELNPDVIVLIEADPDEILMRRLRDET-------------------  133 (188)
T ss_pred             HHhhcCCCEEEeeeeeeccCCCCcCCCCHHHHh--hcCCCEEEEEeCCHHHHHHHHhcccc-------------------
Confidence            3333334588998643221111   111 1221  25789999999999999888774200                   


Q ss_pred             CCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhh-C--CcEEEEcCCCChhHHHHHHHHHhc
Q 025529          186 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK-K--GIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       186 ~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~-~--~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                               -.|+.++.+.++.+++.....    ..+|.. .  ..++.+|.+..+++.++++.++|.
T Consensus       134 ---------R~R~~es~e~I~~~~~~a~~~----a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii~  188 (188)
T PRK04040        134 ---------RRRDVETEEDIEEHQEMNRAA----AMAYAVLTGATVKIVENREGLLEEAAEEIVEVLR  188 (188)
T ss_pred             ---------cCCCCCCHHHHHHHHHHHHHH----HHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHhC
Confidence                     013445566676666543332    122332 1  234455555459999999988763

>PRK07933 thymidylate kinase; Validated

Probab=99.52  E-value=7.9e-13  Score=107.69  Aligned_cols=180  Identities=14%  Similarity=0.086  Sum_probs=95.2

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHH-cCCchHHHHHHHHHcCC--C-cCHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVA-AKTPLGIKAKEAMDKGE--L-VSDDLVVGII  105 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~-~~~~~~~~i~~~l~~~~--~-~~~~~~~~ll  105 (251)
                      |.|+|+     |+.||||||+++.|++++   |..++-+..     .. .+++.|..+++.+....  . .......-+.
T Consensus         1 ~~IviE-----G~dGsGKST~~~~L~~~L~~~g~~v~~~~~-----P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf   70 (213)
T PRK07933          1 MLIAIE-----GVDGAGKRTLTEALRAALEARGRSVATLAF-----PRYGRSVHADLAAEALHGRHGDLADSVYAMATLF   70 (213)
T ss_pred             CEEEEE-----cCCCCCHHHHHHHHHHHHHHCCCeEEEEec-----CCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHH
Confidence            467888     999999999999999998   333332211     10 23456666776665321  1 1111111000


Q ss_pred             -HHH------Hc-CCCCCCceEEeCCCCCHH--HH-----------HHHHHHHHh---cCCCcCEEEEEecCHHHHHHHH
Q 025529          106 -DEA------MK-KPSCQKGFILDGFPRTEV--QA-----------QKLDEMLEK---QGKKVDKVLNFAIDDAVLEERI  161 (251)
Q Consensus       106 -~~~------l~-~~~~~~~~Iidg~~~~~~--~~-----------~~l~~~~~~---~~~~~~~vI~L~~~~e~~~~Rl  161 (251)
                       ..+      +. ....+..+|.|+|..+-.  |.           ..+...+..   ....||++|||++|+++..+|+
T Consensus        71 ~a~R~~~~~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri  150 (213)
T PRK07933         71 ALDRAGARDELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERA  150 (213)
T ss_pred             hhhhhhhHHHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHH
Confidence             011      11 112234577888765432  11           111111211   1237999999999999999999


Q ss_pred             hcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHH
Q 025529          162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEV  241 (251)
Q Consensus       162 ~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev  241 (251)
                      ..|.... .+..                     ..+.+...+.+++-.+.|.+...    .+ ....++.||++.++++|
T Consensus       151 ~~R~~~~-~~~~---------------------~d~~E~~~~f~~~v~~~Y~~~~~----~~-~~~~~~~ida~~~~e~v  203 (213)
T PRK07933        151 RRRAAQD-ADRA---------------------RDAYERDDGLQQRTGAVYAELAA----QG-WGGPWLVVDPDVDPAAL  203 (213)
T ss_pred             Hhhcccc-CCcc---------------------cccccccHHHHHHHHHHHHHHHH----hc-CCCCeEEeCCCCCHHHH
Confidence            9874210 0000                     00011111222222233322221    10 12378899999999999


Q ss_pred             HHHHHHHh
Q 025529          242 TSEVQKAL  249 (251)
Q Consensus       242 ~~~i~~~l  249 (251)
                      .++|.+.|
T Consensus       204 ~~~i~~~~  211 (213)
T PRK07933        204 AARLAAAL  211 (213)
T ss_pred             HHHHHHHh
Confidence            99999876

>PRK13946 shikimate kinase; Provisional

Probab=99.52  E-value=6.1e-13  Score=106.04  Aligned_cols=116  Identities=20%  Similarity=0.169  Sum_probs=68.9

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA  108 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~  108 (251)
                      ++.++.|+++     |++||||||+++.|++++|+++++.|.++....  +......+..   .|.......-.+++...
T Consensus         7 ~~~~~~I~l~-----G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l   76 (184)
T PRK13946          7 ALGKRTVVLV-----GLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARL   76 (184)
T ss_pred             ccCCCeEEEE-----CCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHH
Confidence            3456789999     999999999999999999999999998766542  2222111111   11111111122333332


Q ss_pred             HcCCCCCCceEEeCCC--CCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          109 MKKPSCQKGFILDGFP--RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       109 l~~~~~~~~~Iidg~~--~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      +..   ...+|..|..  ........+.    .    ..++|||++|.+++.+|+..|.
T Consensus        77 ~~~---~~~Vi~~ggg~~~~~~~r~~l~----~----~~~~v~L~a~~e~~~~Rl~~r~  124 (184)
T PRK13946         77 LKG---GPLVLATGGGAFMNEETRAAIA----E----KGISVWLKADLDVLWERVSRRD  124 (184)
T ss_pred             Hhc---CCeEEECCCCCcCCHHHHHHHH----c----CCEEEEEECCHHHHHHHhcCCC
Confidence            221   1234444432  2222222221    1    2578999999999999998774

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.51  E-value=2e-13  Score=108.29  Aligned_cols=115  Identities=21%  Similarity=0.258  Sum_probs=77.3

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCC-----CcCH---------------
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-----LVSD---------------   98 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-----~~~~---------------   98 (251)
                      ||+|+|++||||||+++.|++ +|++++++|.+.++...++...+..+.+.+..+.     .+..               
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~   79 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence            467779999999999999999 8999999999999988888777777777764322     1211               


Q ss_pred             ---HHHHHHHHHHH----cCCCCCCceE-EeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529           99 ---DLVVGIIDEAM----KKPSCQKGFI-LDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus        99 ---~~~~~ll~~~l----~~~~~~~~~I-idg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                         ++++..+...+    ..... ..++ ++ .|......  +.       ..+|.+|++++|.++.++|+..|.
T Consensus        80 ~l~~i~hp~i~~~~~~~~~~~~~-~~~vive-~plL~e~~--~~-------~~~D~vv~V~a~~~~ri~Rl~~Rd  143 (179)
T cd02022          80 KLEAITHPLIRKEIEEQLAEARK-EKVVVLD-IPLLFETG--LE-------KLVDRVIVVDAPPEIQIERLMKRD  143 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccC-CCEEEEE-ehHhhcCC--cH-------HhCCeEEEEECCHHHHHHHHHHcC
Confidence               22222222222    11111 2344 44 34332211  11       346899999999999999999873

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.51  E-value=2.9e-13  Score=108.69  Aligned_cols=162  Identities=10%  Similarity=0.124  Sum_probs=102.3

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCH---------------
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSD---------------   98 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~---------------   98 (251)
                      +|+|+|++||||||+++.|++ +|+.+++.|.+.+..+.++.+....+.+.+...     +.+..               
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~   79 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK   79 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence            367779999999999999976 799999999999998888777666666554321     22221               


Q ss_pred             ---HHHHHHHHH----HHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCC
Q 025529           99 ---DLVVGIIDE----AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG  171 (251)
Q Consensus        99 ---~~~~~ll~~----~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~  171 (251)
                         .+++..+..    .+..... ..+++-..|...+...         ...+|.+|++++|.++..+|+..|.      
T Consensus        80 ~L~~i~hP~v~~~~~~~~~~~~~-~~~vi~e~pLL~E~~~---------~~~~D~vi~V~a~~e~r~~RL~~R~------  143 (196)
T PRK14732         80 ALNELIHPLVRKDFQKILQTTAE-GKLVIWEVPLLFETDA---------YTLCDATVTVDSDPEESILRTISRD------  143 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhc-CCcEEEEeeeeeEcCc---------hhhCCEEEEEECCHHHHHHHHHHcC------
Confidence               122222222    1111111 2344333444332110         1346999999999999999999883      


Q ss_pred             ceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          172 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       172 ~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                                 +.+.+.+.+|+....    +..+..... . +.|+++.+++++..+|.+.++
T Consensus       144 ---------------------------g~s~e~a~~ri~~Q~----~~~~k~~~a-D-~vI~N~~~~~~l~~~v~~l~~  189 (196)
T PRK14732        144 ---------------------------GMKKEDVLARIASQL----PITEKLKRA-D-YIVRNDGNREGLKEECKILYS  189 (196)
T ss_pred             ---------------------------CCCHHHHHHHHHHcC----CHHHHHHhC-C-EEEECCCCHHHHHHHHHHHHH
Confidence                                       345678888886521    222222222 2 356777899999999887653

>PRK04182 cytidylate kinase; Provisional

Probab=99.50  E-value=1.8e-12  Score=102.58  Aligned_cols=111  Identities=21%  Similarity=0.264  Sum_probs=66.8

Q ss_pred             ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCceE
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFI  119 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~I  119 (251)
                      |+|+|++||||||+++.|++++|+++++++++++............+.+.......+ ...+...+.. +.  ....++|
T Consensus         3 I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~--~~~~~~V   78 (180)
T PRK04182          3 ITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEEDPEI-DKEIDRRQLE-IA--EKEDNVV   78 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhcCchH-HHHHHHHHHH-HH--hcCCCEE
Confidence            444499999999999999999999999999888775543221111222211111111 1122222211 11  0235688


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          120 LDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       120 idg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ++|.....        .+.   ..++++|+|++|.+++.+|+..|.
T Consensus        79 i~g~~~~~--------~~~---~~~~~~V~l~a~~e~~~~Rl~~r~  113 (180)
T PRK04182         79 LEGRLAGW--------MAK---DYADLKIWLKAPLEVRAERIAERE  113 (180)
T ss_pred             EEEeecce--------Eec---CCCCEEEEEECCHHHHHHHHHhcc
Confidence            88742111        000   126789999999999999998873

>PLN02199 shikimate kinase

Probab=99.49  E-value=2.5e-12  Score=107.82  Aligned_cols=113  Identities=14%  Similarity=0.208  Sum_probs=71.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-CCCcCHHHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEA  108 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~ll~~~  108 (251)
                      .++.+|+++     |++||||||+++.|++.+|++++++|.++++...     |..+.+++.. |.....+.-.+++.+.
T Consensus       100 l~~~~I~LI-----G~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~L  169 (303)
T PLN02199        100 LNGRSMYLV-----GMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKKL  169 (303)
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            457789999     9999999999999999999999999999988533     2334444442 3222222233333332


Q ss_pred             HcCCCCCCceEE-eCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhc
Q 025529          109 MKKPSCQKGFIL-DGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG  163 (251)
Q Consensus       109 l~~~~~~~~~Ii-dg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~  163 (251)
                      .    ...+.|| .|... ......+. .+. .    ..+|||++|.+++.+|+..
T Consensus       170 ~----~~~~~VIStGGG~-V~~~~n~~-~L~-~----G~vV~Ldas~E~l~~RL~~  214 (303)
T PLN02199        170 S----SRYQVVVSTGGGA-VIRPINWK-YMH-K----GISIWLDVPLEALAHRIAA  214 (303)
T ss_pred             H----hcCCEEEECCCcc-cCCHHHHH-HHh-C----CeEEEEECCHHHHHHHHhh
Confidence            2    1223444 33321 21222222 221 1    4699999999999999985

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.48  E-value=1.6e-12  Score=119.43  Aligned_cols=118  Identities=15%  Similarity=0.239  Sum_probs=78.4

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-CCCcCHHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDE  107 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~ll~~  107 (251)
                      |.+..+|+++     |+|||||||+++.||+.+|++++++|.++.+.      .|..+.+++.. |.....+.-.+.+.+
T Consensus         3 ~~~~~~i~Li-----G~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~------~g~si~eif~~~Ge~~FR~~E~~~l~~   71 (542)
T PRK14021          3 PTRRPQAVII-----GMMGAGKTRVGKEVAQMMRLPFADADVEIERE------IGMSIPSYFEEYGEPAFREVEADVVAD   71 (542)
T ss_pred             CCCCccEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEchHHHHHH------HCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677889999     99999999999999999999999999988773      45566666643 333323333344433


Q ss_pred             HHcCCCCCCceEEeC--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          108 AMKKPSCQKGFILDG--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       108 ~l~~~~~~~~~Iidg--~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                      .+..   ...+|-.|  .+........|.+++.+.    ..+|||++|.+++.+|+..+
T Consensus        72 ~~~~---~~~VIs~GGG~v~~~~n~~~L~~~~~~~----g~vv~L~~~~~~l~~Rl~~~  123 (542)
T PRK14021         72 MLED---FDGIFSLGGGAPMTPSTQHALASYIAHG----GRVVYLDADPKEAMERANRG  123 (542)
T ss_pred             HHhc---CCeEEECCCchhCCHHHHHHHHHHHhcC----CEEEEEECCHHHHHHHHhCC
Confidence            3221   12344233  233334444444444333    37999999999999998754

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.48  E-value=1.7e-13  Score=108.38  Aligned_cols=116  Identities=18%  Similarity=0.222  Sum_probs=75.4

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHH--------------
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDD--------------   99 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~--------------   99 (251)
                      +|+|+|+.||||||+++.|++ +|++++++|.+.++.+.++++....+.+.+...     +.+...              
T Consensus         2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~~   80 (180)
T PF01121_consen    2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKLK   80 (180)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHHH
Confidence            567779999999999999999 999999999999998888888777777766533     222221              


Q ss_pred             ----HHHHHH----HHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          100 ----LVVGII----DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       100 ----~~~~ll----~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                          +++.++    ...+........+++| .|...+.  .       ....+|.+|++.+|.++..+|+..|.
T Consensus        81 ~L~~iihP~I~~~~~~~~~~~~~~~~~v~e-~pLL~E~--~-------~~~~~D~vi~V~a~~e~ri~Rl~~R~  144 (180)
T PF01121_consen   81 KLENIIHPLIREEIEKFIKRNKSEKVVVVE-IPLLFES--G-------LEKLCDEVIVVYAPEEIRIKRLMERD  144 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT--T-------GGGGSSEEEEEE--HHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHhccCCCEEEEE-cchhhhh--h-------HhhhhceEEEEECCHHHHHHHHHhhC
Confidence                222222    2222222222334455 3432221  1       11457999999999999999999884

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK08118 topology modulation protein; Reviewed

Probab=99.48  E-value=2.9e-13  Score=106.16  Aligned_cols=100  Identities=22%  Similarity=0.301  Sum_probs=71.3

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      ++|+|+     |+|||||||+|+.|++.+++++++.|.++...                ....++++.+..++.+.+.  
T Consensus         2 ~rI~I~-----G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~--   58 (167)
T PRK08118          2 KKIILI-----GSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVK--   58 (167)
T ss_pred             cEEEEE-----CCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhc--
Confidence            468888     99999999999999999999999999876430                0112334444455544443  


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI  166 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~  166 (251)
                        ..+||+||.+..... .    .+    ..+|.+|+|++|.+.+..|+..|..
T Consensus        59 --~~~wVidG~~~~~~~-~----~l----~~~d~vi~Ld~p~~~~~~R~~~R~~  101 (167)
T PRK08118         59 --EDEWIIDGNYGGTMD-I----RL----NAADTIIFLDIPRTICLYRAFKRRV  101 (167)
T ss_pred             --CCCEEEeCCcchHHH-H----HH----HhCCEEEEEeCCHHHHHHHHHHHHH
Confidence              247999996443221 1    11    2479999999999999999988853

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.47  E-value=7.5e-13  Score=98.85  Aligned_cols=153  Identities=20%  Similarity=0.245  Sum_probs=94.8

Q ss_pred             CCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHH---HHHHHHHHHcC-CCCCCceE
Q 025529           44 GPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL---VVGIIDEAMKK-PSCQKGFI  119 (251)
Q Consensus        44 G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~ll~~~l~~-~~~~~~~I  119 (251)
                      |..||||||+++.|++++|..+++.|++...         ..+ +.+..|.++.|+-   +.+.+...+.. ...++..|
T Consensus         2 GVsG~GKStvg~~lA~~lg~~fidGDdlHp~---------aNi-~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~v   71 (161)
T COG3265           2 GVSGSGKSTVGSALAERLGAKFIDGDDLHPP---------ANI-EKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVV   71 (161)
T ss_pred             CCCccCHHHHHHHHHHHcCCceecccccCCH---------HHH-HHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceE
Confidence            9999999999999999999999999987432         122 3456677766642   23333333333 33344445


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCC
Q 025529          120 LDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD  199 (251)
Q Consensus       120 idg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~  199 (251)
                      +-+-. ...+++   ..+...... -.+|||+.+.+++.+|+..|..|.+          |+                  
T Consensus        72 i~CSA-LKr~YR---D~LR~~~~~-~~Fv~L~g~~~~i~~Rm~~R~gHFM----------~~------------------  118 (161)
T COG3265          72 IACSA-LKRSYR---DLLREANPG-LRFVYLDGDFDLILERMKARKGHFM----------PA------------------  118 (161)
T ss_pred             EecHH-HHHHHH---HHHhccCCC-eEEEEecCCHHHHHHHHHhcccCCC----------CH------------------
Confidence            54322 222332   222222112 4689999999999999999975532          21                  


Q ss_pred             CcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          200 DTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       200 ~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                         .-++.       ++..++..-. ...++.||.+.+++++.+.+.+.|.
T Consensus       119 ---~ll~S-------Qfa~LE~P~~-de~vi~idi~~~~e~vv~~~~~~l~  158 (161)
T COG3265         119 ---SLLDS-------QFATLEEPGA-DEDVLTIDIDQPPEEVVAQALAWLK  158 (161)
T ss_pred             ---HHHHH-------HHHHhcCCCC-CCCEEEeeCCCCHHHHHHHHHHHHh
Confidence               11111       1222222221 2268899999999999999988775

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.47  E-value=8.4e-13  Score=99.16  Aligned_cols=163  Identities=18%  Similarity=0.226  Sum_probs=103.0

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHH----HHHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD----LVVGIIDEAM  109 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~----~~~~ll~~~l  109 (251)
                      .|+++     |+.||||||+++.|++++++++++.|++...          .-.+.+.+|.+++|+    |+..+-....
T Consensus        14 ~i~vm-----GvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~----------~NveKM~~GipLnD~DR~pWL~~i~~~~~   78 (191)
T KOG3354|consen   14 VIVVM-----GVSGSGKSTIGKALSEELGLKFIDGDDLHPP----------ANVEKMTQGIPLNDDDRWPWLKKIAVELR   78 (191)
T ss_pred             eEEEE-----ecCCCChhhHHHHHHHHhCCcccccccCCCH----------HHHHHHhcCCCCCcccccHHHHHHHHHHH
Confidence            58888     9999999999999999999999999987432          223456667776653    4444443333


Q ss_pred             cCCCCCCceEEeCCCCCHHHHHHHHHHHHh-----cCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCC
Q 025529          110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEK-----QGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVP  184 (251)
Q Consensus       110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~-----~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~  184 (251)
                      ......+++|+-+-.......+.|.+-+..     ..-..-.+|+|.++.|++.+|+..|..|.+          |+   
T Consensus        79 ~~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFM----------p~---  145 (191)
T KOG3354|consen   79 KALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFM----------PA---  145 (191)
T ss_pred             HHhhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccC----------CH---
Confidence            344455788886543333444444442220     111123688999999999999999975532          21   


Q ss_pred             CCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHh
Q 025529          185 GVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKAL  249 (251)
Q Consensus       185 ~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l  249 (251)
                                        +-++..+..       ++.--.+...++.|+.. .++|++++.|.+.+
T Consensus       146 ------------------~lleSQf~~-------LE~p~~~e~div~isv~~~~~e~iv~tI~k~~  186 (191)
T KOG3354|consen  146 ------------------DLLESQFAT-------LEAPDADEEDIVTISVKTYSVEEIVDTIVKMV  186 (191)
T ss_pred             ------------------HHHHHHHHh-------ccCCCCCccceEEEeeccCCHHHHHHHHHHHH
Confidence                              122222111       11001122367888887 99999999988765

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.45  E-value=2.9e-12  Score=104.92  Aligned_cols=176  Identities=16%  Similarity=0.138  Sum_probs=88.4

Q ss_pred             cccCCCCCChhHHHHHHHHHhCCceechhHH--HHHHHHcCCchHH------HHHHHHHcCC---CcCHHHHHHHHHHHH
Q 025529           41 WLAGPPGSGKGTQSPIIKDEYCLCHLATGDM--LRAAVAAKTPLGI------KAKEAMDKGE---LVSDDLVVGIIDEAM  109 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~~~~~~~i~~~~l--i~~~~~~~~~~~~------~i~~~l~~~~---~~~~~~~~~ll~~~l  109 (251)
                      +|.|..||||||+++.|+++++..++.....  .....+.++.++.      .++.......   .........++..+.
T Consensus         3 ~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~R~   82 (219)
T cd02030           3 TVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSSRL   82 (219)
T ss_pred             EEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHHHH
Confidence            3349999999999999999998655433211  0000001111211      1333333221   111111111111111


Q ss_pred             c--------CCCCCCceEEeCCCCCHH-H--------------HHHHHHH---HHhcCCCcCEEEEEecCHHHHHHHHhc
Q 025529          110 K--------KPSCQKGFILDGFPRTEV-Q--------------AQKLDEM---LEKQGKKVDKVLNFAIDDAVLEERITG  163 (251)
Q Consensus       110 ~--------~~~~~~~~Iidg~~~~~~-~--------------~~~l~~~---~~~~~~~~~~vI~L~~~~e~~~~Rl~~  163 (251)
                      .        ....+..+|+|+++.+-. .              ...+.++   +......||++|||++|++.+.+|+..
T Consensus        83 ~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri~~  162 (219)
T cd02030          83 LQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRIKK  162 (219)
T ss_pred             HHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHH
Confidence            1        122345788998754321 1              1111111   111225799999999999999999998


Q ss_pred             CcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC--CChhHH
Q 025529          164 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE--KPPQEV  241 (251)
Q Consensus       164 r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~--~~~eev  241 (251)
                      |...      ++                      .... ..+.+++..++..+.  ...|.....++.||++  .+.+++
T Consensus       163 R~~~------~e----------------------~~~~-~~yl~~l~~~y~~~~--~~~~~~~~~~i~id~~~~~~~e~i  211 (219)
T cd02030         163 RGDP------HE----------------------MKVT-SAYLQDIENAYKKTF--LPEISEHSEVLQYDWTEAGDTEKV  211 (219)
T ss_pred             cCCc------hh----------------------hccc-HHHHHHHHHHHHHHH--HHhhccCCCEEEEeCCChhhHHHH
Confidence            7411      00                      0111 222233333222221  1113333478899998  888888


Q ss_pred             HHHHHH
Q 025529          242 TSEVQK  247 (251)
Q Consensus       242 ~~~i~~  247 (251)
                      +++|..
T Consensus       212 ~~~I~~  217 (219)
T cd02030         212 VEDIEY  217 (219)
T ss_pred             HHHHHc
Confidence            887753

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=99.44  E-value=9e-13  Score=105.14  Aligned_cols=160  Identities=17%  Similarity=0.159  Sum_probs=88.8

Q ss_pred             CCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH--------HHHHc-C
Q 025529           44 GPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII--------DEAMK-K  111 (251)
Q Consensus        44 G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll--------~~~l~-~  111 (251)
                      |+.||||||+++.|++++.   ..++-.      ..+..++.|..+++++............-+.        ...+. .
T Consensus         3 GiDGsGKtT~~~~L~~~l~~~~~~~~~~------~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~   76 (186)
T PF02223_consen    3 GIDGSGKTTQIRLLAEALKEKGYKVIIT------FPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPA   76 (186)
T ss_dssp             ESTTSSHHHHHHHHHHHHHHTTEEEEEE------ESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCCccccc------CCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999983   221111      0123467788888888744444332222111        11111 1


Q ss_pred             CCCCCceEEeCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCC
Q 025529          112 PSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFA  179 (251)
Q Consensus       112 ~~~~~~~Iidg~~~~------------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~  179 (251)
                      ...+..+|.|.|..+            ......+...+  ....||++|+|++++++..+|+..|...            
T Consensus        77 l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~--~~~~PDl~~~Ldv~pe~~~~R~~~r~~~------------  142 (186)
T PF02223_consen   77 LKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDI--FLPKPDLTFFLDVDPEEALKRIAKRGEK------------  142 (186)
T ss_dssp             HHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHH--HTTE-SEEEEEECCHHHHHHHHHHTSST------------
T ss_pred             HcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHh--cCCCCCEEEEEecCHHHHHHHHHcCCcc------------
Confidence            122345777875222            11111121111  1128999999999999999999998520            


Q ss_pred             CCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHH
Q 025529          180 PPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV  245 (251)
Q Consensus       180 ~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i  245 (251)
                                      .+.........+++   ++.+..+.+   ..+.++.||++.+++++.++|
T Consensus       143 ----------------~~~~~~~~~~~~~~---~~~y~~l~~---~~~~~~iid~~~~~e~v~~~I  186 (186)
T PF02223_consen  143 ----------------DDEEEEDLEYLRRV---REAYLELAK---DPNNWVIIDASRSIEEVHEQI  186 (186)
T ss_dssp             ----------------TTTTTHHHHHHHHH---HHHHHHHHH---TTTTEEEEETTS-HHHHHHHH
T ss_pred             ----------------chHHHHHHHHHHHH---HHHHHHHHc---CCCCEEEEECCCCHHHHHhhC
Confidence                            00111122222222   222222222   356899999999999999886

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.44  E-value=6.7e-12  Score=101.02  Aligned_cols=162  Identities=15%  Similarity=0.120  Sum_probs=97.5

Q ss_pred             ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC----CCcCH-----------------
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG----ELVSD-----------------   98 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~----~~~~~-----------------   98 (251)
                      |+|+|++||||||+++.|++++|+++++.|.+.+..+.+ ......+.+.+..+    +.+..                 
T Consensus         9 IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~~~L   87 (204)
T PRK14733          9 IGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAKKWL   87 (204)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHHHHH
Confidence            344499999999999999999999999999998887664 33333343333221    12221                 


Q ss_pred             -HHHHHHHH----HHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCce
Q 025529           99 -DLVVGIID----EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRT  173 (251)
Q Consensus        99 -~~~~~ll~----~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~  173 (251)
                       .+++..+.    ..+... ....+++|. |...+....+       ...+|.+|++.||.++.++|+..|.        
T Consensus        88 e~i~HP~V~~~~~~~~~~~-~~~~vv~ei-pLL~E~~~~~-------~~~~D~vi~V~a~~e~ri~Rl~~Rd--------  150 (204)
T PRK14733         88 EDYLHPVINKEIKKQVKES-DTVMTIVDI-PLLGPYNFRH-------YDYLKKVIVIKADLETRIRRLMERD--------  150 (204)
T ss_pred             HhhhhHHHHHHHHHHHHhc-CCCeEEEEe-chhhhccCch-------hhhCCEEEEEECCHHHHHHHHHHcC--------
Confidence             11222222    222211 112234443 4322210000       1247899999999999999999873        


Q ss_pred             ecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCC-ChhHHHHHHHHHhc
Q 025529          174 YHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK-PPQEVTSEVQKALS  250 (251)
Q Consensus       174 ~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~-~~eev~~~i~~~l~  250 (251)
                                               +.+.+.+.+|++....    ..+..... . ++|+.+. +.+++.++|.+.++
T Consensus       151 -------------------------~~s~~~a~~ri~~Q~~----~eek~~~a-D-~VI~N~g~~~~~l~~~~~~~~~  197 (204)
T PRK14733        151 -------------------------GKNRQQAVAFINLQIS----DKEREKIA-D-FVIDNTELTDQELESKLITTIN  197 (204)
T ss_pred             -------------------------CCCHHHHHHHHHhCCC----HHHHHHhC-C-EEEECcCCCHHHHHHHHHHHHH
Confidence                                     4466788888865322    22222211 2 3577777 99999999988765

>PRK13976 thymidylate kinase; Provisional

Probab=99.44  E-value=1.4e-11  Score=99.86  Aligned_cols=119  Identities=17%  Similarity=0.095  Sum_probs=69.5

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCC-----ceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHH-H---
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCL-----CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV-G---  103 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~-----~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~---  103 (251)
                      +.|+|+     |..||||||+++.|++.+.-     .++-+     . .+.++.+|+.+++.+.....+...... -   
T Consensus         1 ~fIv~E-----GiDGsGKsTq~~~L~~~L~~~~g~~~v~~~-----~-eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a   69 (209)
T PRK13976          1 MFITFE-----GIDGSGKTTQSRLLAEYLSDIYGENNVVLT-----R-EPGGTSFNELVRGLLLSLKNLDKISELLLFIA   69 (209)
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHHHHhcCCcceEEe-----e-CCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHH
Confidence            467888     99999999999999998842     22211     1 123567788888877642222222111 1   


Q ss_pred             ----HHHHHHc-CCCCCCceEEeCCCCCHHH------------HHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          104 ----IIDEAMK-KPSCQKGFILDGFPRTEVQ------------AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       104 ----ll~~~l~-~~~~~~~~Iidg~~~~~~~------------~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                          .+...+. .+..+..+|.|.|..+...            ...+...+  ....||++|+|++|++++.+|+..+
T Consensus        70 ~R~~~~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~--~~~~PDl~i~Ldv~~e~a~~Ri~~~  145 (209)
T PRK13976         70 MRREHFVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLV--VDKYPDITFVLDIDIELSLSRADKN  145 (209)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHh--hCCCCCEEEEEeCCHHHHHHHhccc
Confidence                1111111 1122345677887554221            12222221  1347999999999999999998644

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.43  E-value=6.4e-12  Score=108.02  Aligned_cols=130  Identities=14%  Similarity=0.165  Sum_probs=75.3

Q ss_pred             HHHHHHHHhh---ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHH-c
Q 025529           17 LMTELLRRMK---CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-K   92 (251)
Q Consensus        17 ~~~~~~~~~~---~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~   92 (251)
                      ...+.+..+.   ..+.+++.|+++     |+|||||||+++.|++++|++++++|..+.+..      |..+.+.+. .
T Consensus       115 ~~~~~l~~~~~~~~~~~~~~~I~l~-----G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~------G~~i~ei~~~~  183 (309)
T PRK08154        115 RVRDALSGMLGAGRRAARRRRIALI-----GLRGAGKSTLGRMLAARLGVPFVELNREIEREA------GLSVSEIFALY  183 (309)
T ss_pred             HHHHHHHHHHhhhhhccCCCEEEEE-----CCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh------CCCHHHHHHHH
Confidence            3444444443   345678889999     999999999999999999999999987765532      222222222 1


Q ss_pred             CCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529           93 GELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus        93 ~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      |.......-.+.+...+..   ....|+............+..+.     ...++|||++|.+++.+|+..|.
T Consensus       184 G~~~fr~~e~~~l~~ll~~---~~~~VI~~Ggg~v~~~~~~~~l~-----~~~~~V~L~a~~e~~~~Rl~~r~  248 (309)
T PRK08154        184 GQEGYRRLERRALERLIAE---HEEMVLATGGGIVSEPATFDLLL-----SHCYTVWLKASPEEHMARVRAQG  248 (309)
T ss_pred             CHHHHHHHHHHHHHHHHhh---CCCEEEECCCchhCCHHHHHHHH-----hCCEEEEEECCHHHHHHHHhcCC
Confidence            2111112222233332221   12345533222222222222221     12479999999999999998763

>PRK06762 hypothetical protein; Provisional

Probab=99.43  E-value=9.5e-12  Score=97.39  Aligned_cols=159  Identities=12%  Similarity=0.099  Sum_probs=91.3

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh--CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~  110 (251)
                      +.|+|.     |+|||||||+|+.|++++  ++.+++.|.+.+. +.....          .........+..+....+ 
T Consensus         3 ~li~i~-----G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~-l~~~~~----------~~~~~~~~~~~~~~~~~~-   65 (166)
T PRK06762          3 TLIIIR-----GNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD-MLRVKD----------GPGNLSIDLIEQLVRYGL-   65 (166)
T ss_pred             eEEEEE-----CCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH-hccccC----------CCCCcCHHHHHHHHHHHH-
Confidence            445555     999999999999999999  5667777665432 211000          000111222222322222 


Q ss_pred             CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529          111 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT  190 (251)
Q Consensus       111 ~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~  190 (251)
                        .....+|+|+..........+..+....+ .+..+|+|++|.+++.+|...|...                       
T Consensus        66 --~~g~~vild~~~~~~~~~~~~~~l~~~~~-~~~~~v~Ldap~e~~~~R~~~R~~~-----------------------  119 (166)
T PRK06762         66 --GHCEFVILEGILNSDRYGPMLKELIHLFR-GNAYTYYFDLSFEETLRRHSTRPKS-----------------------  119 (166)
T ss_pred             --hCCCEEEEchhhccHhHHHHHHHHHHhcC-CCeEEEEEeCCHHHHHHHHhccccc-----------------------
Confidence              22345788887544444444444443333 3568999999999999999888410                       


Q ss_pred             CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                             .....+.++.+++.    ...+. .+    ..+.++.+.++++++++|.+.+.
T Consensus       120 -------~~~~~~~l~~~~~~----~~~~~-~~----~~~~~~~~~~~~~v~~~i~~~~~  163 (166)
T PRK06762        120 -------HEFGEDDMRRWWNP----HDTLG-VI----GETIFTDNLSLKDIFDAILTDIG  163 (166)
T ss_pred             -------ccCCHHHHHHHHhh----cCCcC-CC----CeEEecCCCCHHHHHHHHHHHhc
Confidence                   01123444444433    12111 11    23555667899999999988763

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.42  E-value=4.5e-12  Score=98.53  Aligned_cols=103  Identities=21%  Similarity=0.219  Sum_probs=63.0

Q ss_pred             CCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-CCcCHHHHHHHHHHHHcCCCCCCceEEeCC-
Q 025529           46 PGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-ELVSDDLVVGIIDEAMKKPSCQKGFILDGF-  123 (251)
Q Consensus        46 ~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~-  123 (251)
                      |||||||+++.||+.++++++++|.++.+.      .|..+.+++... .........+++.+.+...   ..+|..|. 
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~------~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~---~~VIa~GGG   71 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEER------TGMSISEIFAEEGEEAFRELESEALRELLKEN---NCVIACGGG   71 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHH------HTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSS---SEEEEE-TT
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHH------hCCcHHHHHHcCChHHHHHHHHHHHHHHhccC---cEEEeCCCC
Confidence            799999999999999999999999998763      344555554422 1111222334444433332   33443332 


Q ss_pred             -CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          124 -PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       124 -~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                       +........|.        ....+|||+++.+.+.+|+..+.
T Consensus        72 ~~~~~~~~~~L~--------~~g~vI~L~~~~~~l~~Rl~~~~  106 (158)
T PF01202_consen   72 IVLKEENRELLK--------ENGLVIYLDADPEELAERLRARD  106 (158)
T ss_dssp             GGGSHHHHHHHH--------HHSEEEEEE--HHHHHHHHHHHC
T ss_pred             CcCcHHHHHHHH--------hCCEEEEEeCCHHHHHHHHhCCC
Confidence             23333333333        12579999999999999998764

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.41  E-value=1.7e-12  Score=98.94  Aligned_cols=115  Identities=23%  Similarity=0.362  Sum_probs=74.4

Q ss_pred             ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCc---hHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCC
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP---LGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK  116 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~---~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~  116 (251)
                      |+++|+|||||||+++.|++.++..+++.|.+.........+   .........       ...+...+...+.   .+.
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~---~g~   71 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERA-------YQILNAAIRKALR---NGN   71 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHH-------HHHHHHHHHHHHH---TT-
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHH-------HHHHHHHHHHHHH---cCC
Confidence            445599999999999999999999999998876543321111   001111100       1122233333332   234


Q ss_pred             ceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          117 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       117 ~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      .+|+|...........+..++...+. +..+|+|+++.+++.+|+..|.
T Consensus        72 ~~vvd~~~~~~~~r~~~~~~~~~~~~-~~~~v~l~~~~~~~~~R~~~R~  119 (143)
T PF13671_consen   72 SVVVDNTNLSREERARLRELARKHGY-PVRVVYLDAPEETLRERLAQRN  119 (143)
T ss_dssp             EEEEESS--SHHHHHHHHHHHHHCTE-EEEEEEECHHHHHHHHHHHTTH
T ss_pred             CceeccCcCCHHHHHHHHHHHHHcCC-eEEEEEEECCHHHHHHHHHhcC
Confidence            68899776677777777777766654 3578899999999999999986

...

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.40  E-value=1.2e-11  Score=96.42  Aligned_cols=155  Identities=20%  Similarity=0.205  Sum_probs=85.0

Q ss_pred             ccCCCCCChhHHHHHHHHHhCCceechhHHHHHH----HHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCc
Q 025529           42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA----VAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG  117 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~----~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~  117 (251)
                      |.|++||||||+++.|+..++..+++.|++....    ...+......          -...+...+.............
T Consensus         3 l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~   72 (163)
T TIGR01313         3 LMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDD----------DRWPWLQNLNDASTAAAAKNKV   72 (163)
T ss_pred             EECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChh----------hHHHHHHHHHHHHHHHHhcCCC
Confidence            4499999999999999999999999998863221    1111000000          0012222222111111111223


Q ss_pred             eEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccC
Q 025529          118 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR  197 (251)
Q Consensus       118 ~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r  197 (251)
                      .|++...........+    ...+. ...+|+|++|.+++.+|+..|..+                              
T Consensus        73 ~Vi~~t~~~~~~r~~~----~~~~~-~~~~i~l~~~~e~~~~R~~~R~~~------------------------------  117 (163)
T TIGR01313        73 GIITCSALKRHYRDIL----REAEP-NLHFIYLSGDKDVILERMKARKGH------------------------------  117 (163)
T ss_pred             EEEEecccHHHHHHHH----HhcCC-CEEEEEEeCCHHHHHHHHHhccCC------------------------------
Confidence            3554433222222222    22322 234689999999999999988411                              


Q ss_pred             CCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          198 KDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       198 ~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                       ....+.++.++..+..   +    ......++.||++.+++++.++|.+.|
T Consensus       118 -~~~~~~i~~~~~~~~~---~----~~~e~~~~~id~~~~~~~~~~~~~~~~  161 (163)
T TIGR01313       118 -FMKADMLESQFAALEE---P----LADETDVLRVDIDQPLEGVEEDCIAVV  161 (163)
T ss_pred             -CCCHHHHHHHHHHhCC---C----CCCCCceEEEECCCCHHHHHHHHHHHH
Confidence             0112334444333211   0    011125789999999999999998876

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.40  E-value=5.6e-12  Score=111.64  Aligned_cols=161  Identities=16%  Similarity=0.161  Sum_probs=98.5

Q ss_pred             ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHH---------------
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDD---------------   99 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~---------------   99 (251)
                      |+|+|++||||||+++.|++ +|++++++|.+.++.+.+++.....+.+.+..+     +.+...               
T Consensus         4 IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~~~   82 (395)
T PRK03333          4 IGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEARAV   82 (395)
T ss_pred             EEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHHHH
Confidence            55669999999999999988 899999999999998887765555555444322     222211               


Q ss_pred             ---HHHHHHH----HHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCc
Q 025529          100 ---LVVGIID----EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGR  172 (251)
Q Consensus       100 ---~~~~ll~----~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~  172 (251)
                         +++..+.    +.+... ....+++.+.|...+..  +       ...+|.+|++++|.+++.+|+..|+       
T Consensus        83 le~i~hP~I~~~i~~~i~~~-~~~~vvv~eipLL~E~~--~-------~~~~D~iI~V~ap~e~ri~Rl~~rR-------  145 (395)
T PRK03333         83 LNGIVHPLVGARRAELIAAA-PEDAVVVEDIPLLVESG--M-------APLFHLVVVVDADVEVRVRRLVEQR-------  145 (395)
T ss_pred             HHHhhhHHHHHHHHHHHHhc-CCCCEEEEEeeeeecCC--c-------hhhCCEEEEEECCHHHHHHHHHhcC-------
Confidence               1122222    122122 22346665555433211  1       1346899999999999999998753       


Q ss_pred             eecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          173 TYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       173 ~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                                +.+.+....++..... ..+... .   . -+.|+++.+.+++...|.+.++
T Consensus       146 --------------------------g~s~~~a~~ri~~Q~~-~e~k~~-~---A-D~vIdN~~s~e~l~~~v~~~l~  191 (395)
T PRK03333        146 --------------------------GMAEADARARIAAQAS-DEQRRA-V---A-DVWLDNSGTPDELVEAVRALWA  191 (395)
T ss_pred             --------------------------CCCHHHHHHHHHhcCC-hHHHHH-h---C-CEEEECCCCHHHHHHHHHHHHH
Confidence                                      2233444555533211 111111 1   1 2457888899999988887654

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=99.37  E-value=1.2e-11  Score=98.25  Aligned_cols=30  Identities=17%  Similarity=0.285  Sum_probs=26.4

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL   66 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i   66 (251)
                      .|.|++.     |+.|+||||+++.|+++++..++
T Consensus         4 ~~~IvI~-----G~IG~GKSTLa~~La~~l~~~~~   33 (216)
T COG1428           4 AMVIVIE-----GMIGAGKSTLAQALAEHLGFKVF   33 (216)
T ss_pred             ccEEEEe-----cccccCHHHHHHHHHHHhCCcee
Confidence            5677888     99999999999999999997655

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.36  E-value=2e-11  Score=101.88  Aligned_cols=110  Identities=22%  Similarity=0.234  Sum_probs=65.0

Q ss_pred             ecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC  114 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~  114 (251)
                      |+|+|+|||||||+|+.|++.++     +.+++.|. ++........   .....+       .......+...+..   
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~-lr~~~~~~~~---~~e~~~-------~~~~~~~i~~~l~~---   67 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL-IRESFPVWKE---KYEEFI-------RDSTLYLIKTALKN---   67 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH-HHHHhHHhhH---HhHHHH-------HHHHHHHHHHHHhC---
Confidence            45559999999999999999873     34555543 4443221111   111111       11222334333322   


Q ss_pred             CCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          115 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       115 ~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                      +..+|+|+..........+.......+ .+..+||+++|.+++.+|...|
T Consensus        68 ~~~VI~D~~~~~~~~r~~l~~~ak~~~-~~~~~I~l~~p~e~~~~Rn~~R  116 (249)
T TIGR03574        68 KYSVIVDDTNYYNSMRRDLINIAKEYN-KNYIIIYLKAPLDTLLRRNIER  116 (249)
T ss_pred             CCeEEEeccchHHHHHHHHHHHHHhCC-CCEEEEEecCCHHHHHHHHHhC
Confidence            235888987544444444554444444 3567899999999999998876

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.34  E-value=8e-11  Score=94.41  Aligned_cols=119  Identities=14%  Similarity=0.105  Sum_probs=62.4

Q ss_pred             cccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHH-------HHHHHHHHHcCCC
Q 025529           41 WLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL-------VVGIIDEAMKKPS  113 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~-------~~~ll~~~l~~~~  113 (251)
                      +|.|++||||||+++.|++++++.++.-..-   ......+   .++..+.+........       ..+.+........
T Consensus         3 ~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~---~~~~~~~---~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~~~   76 (193)
T cd01673           3 VVEGNIGAGKSTLAKELAEHLGYEVVPEPVE---PDVEGNP---FLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLS   76 (193)
T ss_pred             EEECCCCCCHHHHHHHHHHHhCCcccccccc---ccCCCCC---CHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3449999999999999999888755432210   0000011   1112221100000000       1111222222222


Q ss_pred             CCCceEEeCCCCCHH---------------HHHHHHHHH---HhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          114 CQKGFILDGFPRTEV---------------QAQKLDEML---EKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       114 ~~~~~Iidg~~~~~~---------------~~~~l~~~~---~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ....+|+|+++.+-.               ....+..++   ......|+++|||+++++++.+|+..|.
T Consensus        77 ~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~  146 (193)
T cd01673          77 TGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRG  146 (193)
T ss_pred             cCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            345788998876421               111111222   1223579999999999999999998874

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.32  E-value=4.2e-11  Score=92.33  Aligned_cols=112  Identities=14%  Similarity=0.176  Sum_probs=63.8

Q ss_pred             EEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025529           35 LILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC  114 (251)
Q Consensus        35 i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~  114 (251)
                      |+++     |+|||||||+++.|++.+|+++++.+.++......  ........   .+    ...+...-...+.....
T Consensus         2 i~l~-----G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~---~~----~~~~~~~e~~~~~~~~~   67 (154)
T cd00464           2 IVLI-----GMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAE---EG----EEGFRELEREVLLLLLT   67 (154)
T ss_pred             EEEE-----cCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHH---HC----HHHHHHHHHHHHHHHhc
Confidence            5556     99999999999999999999999999887664321  11111111   11    12222211111111112


Q ss_pred             CCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          115 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       115 ~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ..++|+++.......... .+.+    .....+|||++|.+.+.+|+..|.
T Consensus        68 ~~~~vi~~g~~~i~~~~~-~~~~----~~~~~~i~l~~~~e~~~~R~~~r~  113 (154)
T cd00464          68 KENAVIATGGGAVLREEN-RRLL----LENGIVVWLDASPEELLERLARDK  113 (154)
T ss_pred             cCCcEEECCCCccCcHHH-HHHH----HcCCeEEEEeCCHHHHHHHhccCC
Confidence            234555432221111111 1122    123579999999999999998763

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.32  E-value=4.8e-12  Score=96.73  Aligned_cols=103  Identities=24%  Similarity=0.280  Sum_probs=62.4

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCce
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF  118 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~  118 (251)
                      ||+|+|+|||||||+|+.|++++|+++++.+.+......      ....... .     ...+...+...+........|
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~------~~~~~~~-~-----~~~i~~~l~~~~~~~~~~~~~   68 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVG------KLASEVA-A-----IPEVRKALDERQRELAKKPGI   68 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHH------HHHHHhc-c-----cHhHHHHHHHHHHHHhhCCCE
Confidence            456669999999999999999999999999843222111      1000000 0     001111222222222223469


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          119 ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       119 Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                      |+||.......           ....+++|+|++|++...+|+..|
T Consensus        69 Vidg~~~~~~~-----------~~~~~~~i~l~~~~~~r~~R~~~r  103 (147)
T cd02020          69 VLEGRDIGTVV-----------FPDADLKIFLTASPEVRAKRRAKQ  103 (147)
T ss_pred             EEEeeeeeeEE-----------cCCCCEEEEEECCHHHHHHHHHHH
Confidence            99986431110           023689999999999999999885

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.30  E-value=5.5e-11  Score=94.89  Aligned_cols=159  Identities=13%  Similarity=0.148  Sum_probs=87.8

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcC-----CchHHHHHHHHHcCCCcCHHHHH------
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK-----TPLGIKAKEAMDKGELVSDDLVV------  102 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~-----~~~~~~i~~~l~~~~~~~~~~~~------  102 (251)
                      .++|+     ||+||||||+++.|+..++..++..+..+.......     .-.+.........+... ..+..      
T Consensus         4 ~i~l~-----G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~yg   77 (186)
T PRK10078          4 LIWLM-----GPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFA-LSWHANGLYYG   77 (186)
T ss_pred             EEEEE-----CCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchh-hHHHHhCCccC
Confidence            56667     999999999999999988765554443222110000     01112222222222211 01000      


Q ss_pred             --HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCC
Q 025529          103 --GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAP  180 (251)
Q Consensus       103 --~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~  180 (251)
                        .-+...+.   ....+|++|.   ......+..   .. ..+..+|+|++|.+++.+|+..|.               
T Consensus        78 ~~~~~~~~l~---~g~~VI~~G~---~~~~~~~~~---~~-~~~~~vi~l~~s~e~l~~RL~~R~---------------  132 (186)
T PRK10078         78 VGIEIDLWLH---AGFDVLVNGS---RAHLPQARA---RY-QSALLPVCLQVSPEILRQRLENRG---------------  132 (186)
T ss_pred             CcHHHHHHHh---CCCEEEEeCh---HHHHHHHHH---Hc-CCCEEEEEEeCCHHHHHHHHHHhC---------------
Confidence              01222222   2345777765   111111222   22 234578899999999999998763               


Q ss_pred             CCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          181 PKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       181 p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                        ..+.+.+.+|+..+.        +|. ...++.||++.++++++++|.+.|.
T Consensus       133 ------------------~~~~~~i~~rl~r~~--------~~~-~ad~~vi~~~~s~ee~~~~i~~~l~  175 (186)
T PRK10078        133 ------------------RENASEINARLARAA--------RYQ-PQDCHTLNNDGSLRQSVDTLLTLLH  175 (186)
T ss_pred             ------------------CCCHHHHHHHHHHhh--------hhc-cCCEEEEeCCCCHHHHHHHHHHHHh
Confidence                              223456777775421        122 2245678888899999999998874

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.29  E-value=5.6e-11  Score=91.40  Aligned_cols=114  Identities=18%  Similarity=0.203  Sum_probs=68.0

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcC----HHHHHHHHHHHHcCC-C
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS----DDLVVGIIDEAMKKP-S  113 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~ll~~~l~~~-~  113 (251)
                      ||+|+|+|||||||+|+.|++.++..+++.|.+......          ..+..+...+    ..++..+........ .
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   70 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANI----------AKMAAGIPLNDEDRWPWLQALTDALLAKLAS   70 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHH----------HHHHcCCCCCccchhhHHHHHHHHHHHHHHh
Confidence            456669999999999999999999999999877543110          0011111111    111222211111111 2


Q ss_pred             CCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          114 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       114 ~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ....+|+|...........+..+.  .+ .+..+|+|++|.+++.+|+..|.
T Consensus        71 ~~~~vVid~~~~~~~~r~~~~~~~--~~-~~~~~v~l~~~~~~~~~R~~~R~  119 (150)
T cd02021          71 AGEGVVVACSALKRIYRDILRGGA--AN-PRVRFVHLDGPREVLAERLAARK  119 (150)
T ss_pred             CCCCEEEEeccccHHHHHHHHhcC--CC-CCEEEEEEECCHHHHHHHHHhcc
Confidence            344688886544444444444332  22 34568999999999999999884

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.26  E-value=4.4e-10  Score=89.56  Aligned_cols=38  Identities=37%  Similarity=0.547  Sum_probs=33.8

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA   75 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~   75 (251)
                      +.|+|-     ||.||||||+|+.||++||+.+++++.+.|..
T Consensus         5 ~~IAID-----GPagsGKsTvak~lA~~Lg~~yldTGamYRa~   42 (222)
T COG0283           5 IIIAID-----GPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV   42 (222)
T ss_pred             eEEEEe-----CCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence            455555     99999999999999999999999999888764

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.25  E-value=1.3e-10  Score=105.48  Aligned_cols=108  Identities=20%  Similarity=0.252  Sum_probs=65.0

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKK  111 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~ll~~~l~~  111 (251)
                      |+|+++     |+|||||||+++.|++++|++++++|.++.+.      .|..+.+++.. |.......-.+.+.+... 
T Consensus         1 m~I~l~-----G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~------~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~-   68 (488)
T PRK13951          1 MRIFLV-----GMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR------EGRSVRRIFEEDGEEYFRLKEKELLRELVE-   68 (488)
T ss_pred             CeEEEE-----CCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH------cCCCHHHHHHHhhhHHHHHHHHHHHHHHhh-
Confidence            467788     99999999999999999999999999988662      22233333332 211112222222322211 


Q ss_pred             CCCCCceEE-eCC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          112 PSCQKGFIL-DGF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       112 ~~~~~~~Ii-dg~--~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                         ....|+ .|.  +........+    .     ...+|||++|.+++.+|+..+
T Consensus        69 ---~~~~Vis~Gggvv~~~~~r~~l----~-----~~~vI~L~as~e~l~~Rl~~~  112 (488)
T PRK13951         69 ---RDNVVVATGGGVVIDPENRELL----K-----KEKTLFLYAPPEVLMERVTTE  112 (488)
T ss_pred             ---cCCEEEECCCccccChHHHHHH----h-----cCeEEEEECCHHHHHHHhccC
Confidence               123343 332  1222222222    1     135899999999999999754

>PRK07261 topology modulation protein; Provisional

Probab=99.23  E-value=3.6e-11  Score=94.63  Aligned_cols=101  Identities=19%  Similarity=0.249  Sum_probs=70.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+|+     |+|||||||+++.|++.+++++++.|.+...   ++             ....+.+.+...+...+.. 
T Consensus         1 ~ri~i~-----G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~-   58 (171)
T PRK07261          1 MKIAII-----GYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ---PN-------------WQERDDDDMIADISNFLLK-   58 (171)
T ss_pred             CEEEEE-----cCCCCCHHHHHHHHHHHhCCCeEecCCEEec---cc-------------cccCCHHHHHHHHHHHHhC-
Confidence            468888     9999999999999999999999998875321   00             0112233344444444422 


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI  166 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~  166 (251)
                         ..||+||..........+.        ..|.+|+|++|.+.+..|+..|..
T Consensus        59 ---~~wIidg~~~~~~~~~~l~--------~ad~vI~Ld~p~~~~~~R~lkR~~  101 (171)
T PRK07261         59 ---HDWIIDGNYSWCLYEERMQ--------EADQIIFLNFSRFNCLYRAFKRYL  101 (171)
T ss_pred             ---CCEEEcCcchhhhHHHHHH--------HCCEEEEEcCCHHHHHHHHHHHHH
Confidence               3499999876533333222        358999999999999999988853

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.23  E-value=6.2e-10  Score=89.42  Aligned_cols=176  Identities=15%  Similarity=0.188  Sum_probs=94.4

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchH-HHHHHHHHc----CCCcCHHHHH----
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLG-IKAKEAMDK----GELVSDDLVV----  102 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~-~~i~~~l~~----~~~~~~~~~~----  102 (251)
                      ++.|++.     |+|||||||+|+.|++++|+.++..+|++++.+.+....+ ...++....    +....+..+.    
T Consensus         3 ~~~i~i~-----G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~   77 (197)
T PRK12339          3 STIHFIG-----GIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLD   77 (197)
T ss_pred             ceEEEEE-----CCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHH
Confidence            4556666     9999999999999999999999999999988877433322 111111111    1111111111    


Q ss_pred             ------HHHHHHHc-CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEec-CHHHHHHHHhcCcCCCCCCcee
Q 025529          103 ------GIIDEAMK-KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI-DDAVLEERITGRWIHPSSGRTY  174 (251)
Q Consensus       103 ------~ll~~~l~-~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~-~~e~~~~Rl~~r~~~~~~~~~~  174 (251)
                            .-+...+. ....+..+|+|+............    .  .. ..++++.+ ++++..+|+..|..+.      
T Consensus        78 q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~----~--~~-v~~i~l~v~d~e~lr~Rl~~R~~~~------  144 (197)
T PRK12339         78 QARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENR----T--NN-IRAFYLYIRDAELHRSRLADRINYT------  144 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHH----h--cC-eEEEEEEeCCHHHHHHHHHHHhhcc------
Confidence                  11111111 112345789998655544432111    1  11 24566665 5677889999885221      


Q ss_pred             cccCCCCCCCCCCCCCCCCcccCCCC-cHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          175 HTKFAPPKVPGVDDVTGEPLIQRKDD-TAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       175 ~~~~~~p~~~~~~~~~~~~~~~r~~~-~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                             .++ ..+.+.+.+..++....-+.+..++. .+-.|++ .+.++.++.+.+.+.
T Consensus       145 -----------------------~~~~p~~~~~~~~~~ir~i~~~l~~~a~~~-~i~~i~~-~~~~~~~~~~~~~~~  196 (197)
T PRK12339        145 -----------------------HKNSPGKRLAEHLPEYRTIMDYSIADARGY-NIKVIDT-DNYREARNPLLDPIS  196 (197)
T ss_pred             -----------------------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHc-CCCeecC-ccHHHHHHHHHHHhc
Confidence                                   111 12223333333333333344433332 2334454 688999988887664

>smart00072 GuKc Guanylate kinase homologues

Probab=99.22  E-value=5.1e-11  Score=94.94  Aligned_cols=163  Identities=21%  Similarity=0.229  Sum_probs=96.0

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh--CCc--eechhHHHHHHHHcCCchH----HHHHHHHHcCCCcCHHHH---
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY--CLC--HLATGDMLRAAVAAKTPLG----IKAKEAMDKGELVSDDLV---  101 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~--~~~--~i~~~~li~~~~~~~~~~~----~~i~~~l~~~~~~~~~~~---  101 (251)
                      +.++++     ||+||||+|+++.|.+.+  ++.  +..+....+.....+.++.    ..+.+.+..|..++....   
T Consensus         3 r~ivl~-----Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~   77 (184)
T smart00072        3 RPIVLS-----GPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGN   77 (184)
T ss_pred             cEEEEE-----CCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCc
Confidence            457777     999999999999999986  222  2222111111111111221    556666666655443222   


Q ss_pred             -----HHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEe-cCHHHHHHHHhcCcCCCCCCceec
Q 025529          102 -----VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA-IDDAVLEERITGRWIHPSSGRTYH  175 (251)
Q Consensus       102 -----~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~-~~~e~~~~Rl~~r~~~~~~~~~~~  175 (251)
                           ...+...+.   .++.+|+|..|....+....       ...| ++||+. .+.+.+.+|+..|.          
T Consensus        78 ~YGt~~~~i~~~~~---~~~~~ild~~~~~~~~l~~~-------~~~~-~vIfi~~~s~~~l~~rl~~R~----------  136 (184)
T smart00072       78 YYGTSKETIRQVAE---QGKHCLLDIDPQGVKQLRKA-------QLYP-IVIFIAPPSSEELERRLRGRG----------  136 (184)
T ss_pred             CcccCHHHHHHHHH---cCCeEEEEECHHHHHHHHHh-------CCCc-EEEEEeCcCHHHHHHHHHhcC----------
Confidence                 223333332   24678999887666555431       1233 688887 55677999998773          


Q ss_pred             ccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529          176 TKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA  251 (251)
Q Consensus       176 ~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~  251 (251)
                                             +++.+.+.+|+......... ..+|    .+ .|.++ +.++.++++.++|++
T Consensus       137 -----------------------~~~~~~i~~rl~~a~~~~~~-~~~f----d~-~I~n~-~l~~~~~~l~~~i~~  182 (184)
T smart00072      137 -----------------------TETAERIQKRLAAAQKEAQE-YHLF----DY-VIVND-DLEDAYEELKEILEA  182 (184)
T ss_pred             -----------------------CCCHHHHHHHHHHHHHHHhh-hccC----CE-EEECc-CHHHHHHHHHHHHHh
Confidence                                   55678888998875443321 1222    12 34443 799999999988863

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.21  E-value=4.3e-10  Score=87.08  Aligned_cols=176  Identities=18%  Similarity=0.130  Sum_probs=111.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHH--
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDE--  107 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~--  107 (251)
                      .++..|++.     |..+|||||++..|.+.+. +... ...+.++....+..|+.+..++.+...+++.+++-+...  
T Consensus         3 ~rg~liV~e-----GlDrsgKstQ~~~l~~~l~-~~~~-~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnR   75 (208)
T KOG3327|consen    3 IRGALIVLE-----GLDRSGKSTQCGKLVESLI-PGLD-PAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANR   75 (208)
T ss_pred             CCccEEeee-----ccccCCceeehhHHHHHHH-hccC-hHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccch
Confidence            467789999     9999999999999999882 2222 233345566678899999999999988888776543311  


Q ss_pred             ------HHcCCCCCCceEEeCCCCCHHH---HHHHHHHH-H---hcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCcee
Q 025529          108 ------AMKKPSCQKGFILDGFPRTEVQ---AQKLDEML-E---KQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTY  174 (251)
Q Consensus       108 ------~l~~~~~~~~~Iidg~~~~~~~---~~~l~~~~-~---~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~  174 (251)
                            .......+..+|+|.|-.+=..   +..+...+ .   ....+||+++||++|++.+.+| .+.+.        
T Consensus        76 we~~~~i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~r-ggfG~--------  146 (208)
T KOG3327|consen   76 WEHVSLIKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARR-GGFGE--------  146 (208)
T ss_pred             hhHHHHHHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHh-cCcch--------
Confidence                  1111222345788987544221   12122111 1   1236899999999999995544 33320        


Q ss_pred             cccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHh-hCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          175 HTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYS-KKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       175 ~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~-~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                             .......++++...++....      + +...++.+|++.+.|+|.+.|..+++
T Consensus       147 -----------------------Erye~v~fqekv~~~~q~l~------r~e~~~~~~vDAs~sve~V~~~V~~i~e  194 (208)
T KOG3327|consen  147 -----------------------ERYETVAFQEKVLVFFQKLL------RKEDLNWHVVDASKSVEKVHQQVRSLVE  194 (208)
T ss_pred             -----------------------hHHHHHHHHHHHHHHHHHHH------hccCCCeEEEecCccHHHHHHHHHHHHH
Confidence                                   01223445555544433222      2 23468999999999999999976553

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.20  E-value=2.1e-11  Score=98.91  Aligned_cols=166  Identities=15%  Similarity=0.161  Sum_probs=90.1

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCce-echhHHHHH---HHHcCCch----HHHHHHHHHcCCCcCHH-
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH-LATGDMLRA---AVAAKTPL----GIKAKEAMDKGELVSDD-   99 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~-i~~~~li~~---~~~~~~~~----~~~i~~~l~~~~~~~~~-   99 (251)
                      |..+..|+|+     ||+||||||+++.|.+.. ..+ +......+.   .-..+..+    ...+...+.++..+... 
T Consensus        10 ~~~~~~ivi~-----GpsG~GK~tl~~~L~~~~-~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~   83 (206)
T PRK14738         10 PAKPLLVVIS-----GPSGVGKDAVLARMRERK-LPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAE   83 (206)
T ss_pred             CCCCeEEEEE-----CcCCCCHHHHHHHHHhcC-CcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEE
Confidence            5677888899     999999999999998652 211 111000000   00000000    01222333333322110 


Q ss_pred             -------HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecC--HHHHHHHHhcCcCCCCC
Q 025529          100 -------LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID--DAVLEERITGRWIHPSS  170 (251)
Q Consensus       100 -------~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~--~e~~~~Rl~~r~~~~~~  170 (251)
                             +....+...+.   .++.+|++.-+   .....+.+      ..|+.++++.+|  .+++.+|+..|.     
T Consensus        84 ~~g~~YGt~~~~i~~~~~---~g~~vi~~~~~---~g~~~l~~------~~pd~~~if~~pps~e~l~~Rl~~R~-----  146 (206)
T PRK14738         84 VYGNYYGVPKAPVRQALA---SGRDVIVKVDV---QGAASIKR------LVPEAVFIFLAPPSMDELTRRLELRR-----  146 (206)
T ss_pred             EcCceecCCHHHHHHHHH---cCCcEEEEcCH---HHHHHHHH------hCCCeEEEEEeCCCHHHHHHHHHHcC-----
Confidence                   00112222221   22346776533   22232322      346777767765  558899999874     


Q ss_pred             CceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          171 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       171 ~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                                  +++.+.+.+|+..++.......     ...++.||++.++++++++|.+.|.
T Consensus       147 ----------------------------~~~~~~~~~Rl~~~~~e~~~~~-----~~~~~iId~~~~~e~v~~~i~~~l~  193 (206)
T PRK14738        147 ----------------------------TESPEELERRLATAPLELEQLP-----EFDYVVVNPEDRLDEAVAQIMAIIS  193 (206)
T ss_pred             ----------------------------CCCHHHHHHHHHHHHHHHhccc-----CCCEEEECCCCCHHHHHHHHHHHHH
Confidence                                        3345688888877654433211     1257889999999999999998874

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.20  E-value=6.5e-10  Score=87.84  Aligned_cols=120  Identities=16%  Similarity=0.136  Sum_probs=63.3

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCc--eechhHHHHHHHHcCCchHHHHHHHHH-cC--CCcCHH---HHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRAAVAAKTPLGIKAKEAMD-KG--ELVSDD---LVVGI  104 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~--~i~~~~li~~~~~~~~~~~~~i~~~l~-~~--~~~~~~---~~~~l  104 (251)
                      ..|++.     |+|||||||+++.|++.++..  +++.|++.......... .   ...+. ++  ...+..   .....
T Consensus         3 ~~i~l~-----G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~y~~   73 (175)
T cd00227           3 RIIILN-----GGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQD-A---EGGIEFDGDGGVSPGPEFRLLEGA   73 (175)
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcc-c---ccccccCccCCcccchHHHHHHHH
Confidence            356666     999999999999999998654  45777664331110000 0   00000 00  001111   11222


Q ss_pred             HHHHHc-CCCCCCceEEeCCCCCHHHH-HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          105 IDEAMK-KPSCQKGFILDGFPRTEVQA-QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       105 l~~~l~-~~~~~~~~Iidg~~~~~~~~-~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      +...+. ....+..+|+|.......+. ..+..+   . ..+-..|+++||.+++.+|+..|.
T Consensus        74 ~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~---~-~~~~~~v~l~~~~~~l~~R~~~R~  132 (175)
T cd00227          74 WYEAVAAMARAGANVIADDVFLGRAALQDCWRSF---V-GLDVLWVGVRCPGEVAEGRETARG  132 (175)
T ss_pred             HHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHh---c-CCCEEEEEEECCHHHHHHHHHhcC
Confidence            222221 12334578888643322222 222222   1 233478999999999999999874

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.16  E-value=7.4e-09  Score=81.95  Aligned_cols=66  Identities=15%  Similarity=0.187  Sum_probs=46.9

Q ss_pred             CEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHh
Q 025529          145 DKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYS  224 (251)
Q Consensus       145 ~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~  224 (251)
                      ..+|+|++|.+++.+|+..|.                                 ..+.+.+.+|+..+.....       
T Consensus       112 ~~~i~l~~~~~~~~~Rl~~R~---------------------------------~~~~~~~~~rl~~~~~~~~-------  151 (179)
T TIGR02322       112 LLVVNITASPDVLAQRLAARG---------------------------------RESREEIEERLARSARFAA-------  151 (179)
T ss_pred             cEEEEEECCHHHHHHHHHHcC---------------------------------CCCHHHHHHHHHHHhhccc-------
Confidence            478999999999999999773                                 1124567777654322110       


Q ss_pred             hCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          225 KKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       225 ~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                      ....++.++++.+++++.++|.+.+.
T Consensus       152 ~~~~~~vi~~~~~~ee~~~~i~~~l~  177 (179)
T TIGR02322       152 APADVTTIDNSGSLEVAGETLLRLLR  177 (179)
T ss_pred             ccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence            12346668888999999999998875

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.16  E-value=9.7e-10  Score=86.89  Aligned_cols=157  Identities=19%  Similarity=0.218  Sum_probs=89.5

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCH-------HHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD-------DLVVGII  105 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~~ll  105 (251)
                      ..++++     |++||||||+++.|+..++..+++.+++...         ...+... .+....+       ..+....
T Consensus         4 e~i~l~-----G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~---------~~~r~~~-~g~~~~~~~~~~~~~~~~~~~   68 (176)
T PRK09825          4 ESYILM-----GVSGSGKSLIGSKIAALFSAKFIDGDDLHPA---------KNIDKMS-QGIPLTDEDRLPWLERLNDAS   68 (176)
T ss_pred             cEEEEE-----CCCCCCHHHHHHHHHHhcCCEEECCcccCCH---------hHHHHHh-cCCCCCcccchHHHHHHHHHH
Confidence            456777     9999999999999999999888888765221         0111111 1111111       1112222


Q ss_pred             HHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCC
Q 025529          106 DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG  185 (251)
Q Consensus       106 ~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~  185 (251)
                      ...+.  ....|+|+..+.+ ......+    ...+ .+-.+|+|++|.+++.+|+..|..+                  
T Consensus        69 ~~~~~--~~~~g~iv~s~~~-~~~R~~~----r~~~-~~~~~v~l~a~~~~l~~Rl~~R~~~------------------  122 (176)
T PRK09825         69 YSLYK--KNETGFIVCSSLK-KQYRDIL----RKSS-PNVHFLWLDGDYETILARMQRRAGH------------------  122 (176)
T ss_pred             HHHHh--cCCCEEEEEEecC-HHHHHHH----HhhC-CCEEEEEEeCCHHHHHHHHhcccCC------------------
Confidence            22211  1245777755532 2222222    2222 3457899999999999999998521                  


Q ss_pred             CCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          186 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       186 ~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                   .-+.+.+......+.       ..-.....++.||++.+++++.+.+.+.+.
T Consensus       123 -------------~~~~~vl~~Q~~~~e-------~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~  167 (176)
T PRK09825        123 -------------FMPPDLLQSQFDALE-------RPCADEHDIARIDVNHDIENVTEQCRQAVQ  167 (176)
T ss_pred             -------------CCCHHHHHHHHHHcC-------CCCCCcCCeEEEECCCCHHHHHHHHHHHHH
Confidence                         113344444333221       111112358999999999888888877654

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.14  E-value=2.1e-11  Score=90.19  Aligned_cols=34  Identities=26%  Similarity=0.607  Sum_probs=30.3

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHH
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDML   72 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li   72 (251)
                      +|+|+|+|||||||+|+.|+++||++++++|+++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~   34 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI   34 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence            3556699999999999999999999999999954

...

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.14  E-value=1.2e-09  Score=88.70  Aligned_cols=38  Identities=24%  Similarity=0.295  Sum_probs=30.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDML   72 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li   72 (251)
                      .++..|.|.     |++||||||+++.|++.++   +.+++.|++.
T Consensus         4 ~~~~iI~I~-----G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~   44 (209)
T PRK05480          4 KKPIIIGIA-----GGSGSGKTTVASTIYEELGDESIAVIPQDSYY   44 (209)
T ss_pred             CCCEEEEEE-----CCCCCCHHHHHHHHHHHhCCCceEEEeCCccc
Confidence            467777777     9999999999999999983   4566777654

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.12  E-value=1.6e-10  Score=94.83  Aligned_cols=38  Identities=39%  Similarity=0.586  Sum_probs=33.7

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA   75 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~   75 (251)
                      +.|.|.     |++||||||+++.|+++||+++++.+.++|..
T Consensus         5 ~~i~i~-----g~~gsGksti~~~la~~~~~~~~~~~~~~r~~   42 (225)
T PRK00023          5 IVIAID-----GPAGSGKGTVAKILAKKLGFHYLDTGAMYRAV   42 (225)
T ss_pred             eEEEEE-----CCCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence            456666     99999999999999999999999999987763

>PRK06547 hypothetical protein; Provisional

Probab=99.12  E-value=4.5e-10  Score=88.35  Aligned_cols=124  Identities=14%  Similarity=0.064  Sum_probs=69.7

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHH-HHHcCCCc--CHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKE-AMDKGELV--SDDLVVGII  105 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~-~l~~~~~~--~~~~~~~ll  105 (251)
                      +.+++.|+|.     |++||||||+++.|++.+++++++.|++...... .......+.. .+..|...  +.+......
T Consensus        12 ~~~~~~i~i~-----G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~   85 (172)
T PRK06547         12 GGGMITVLID-----GRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWRWDWANNRP   85 (172)
T ss_pred             cCCCEEEEEE-----CCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceecCCCCCCCC
Confidence            4567788888     9999999999999999999999999987542100 0111111222 22222111  000000000


Q ss_pred             HHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          106 DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       106 ~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                      . ..........+|++|.......   +...+...  ...+.|||++|.+++.+|+..|
T Consensus        86 ~-~~~~l~~~~vVIvEG~~al~~~---~r~~~d~~--g~v~~I~ld~~~~vr~~R~~~R  138 (172)
T PRK06547         86 G-DWVSVEPGRRLIIEGVGSLTAA---NVALASLL--GEVLTVWLDGPEALRKERALAR  138 (172)
T ss_pred             C-CcEEeCCCCeEEEEehhhccHH---HHHHhccC--CCEEEEEEECCHHHHHHHHHhc
Confidence            0 0001112345778886443222   22232211  1238999999999999999988

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.11  E-value=7.9e-10  Score=86.26  Aligned_cols=162  Identities=17%  Similarity=0.177  Sum_probs=96.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCc--------hHHHHHHHHHcCCCcCHHHH-
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP--------LGIKAKEAMDKGELVSDDLV-  101 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~--------~~~~i~~~l~~~~~~~~~~~-  101 (251)
                      +++.|++.     ||+|+||||+.+.|-+.. -..++++...|. ..++..        ....+.+.+.++..+....+ 
T Consensus         3 ~G~l~vls-----gPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~-pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~   75 (191)
T COG0194           3 KGLLIVLS-----GPSGVGKSTLVKALLEDD-KLRFSVSATTRK-PRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYH   75 (191)
T ss_pred             CceEEEEE-----CCCCCCHHHHHHHHHhhc-CeEEEEEeccCC-CCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEc
Confidence            56677777     999999999999999988 445566544433 111111        12466666666655432211 


Q ss_pred             -------HHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecC-HHHHHHHHhcCcCCCCCCce
Q 025529          102 -------VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID-DAVLEERITGRWIHPSSGRT  173 (251)
Q Consensus       102 -------~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~-~e~~~~Rl~~r~~~~~~~~~  173 (251)
                             ..-+...+.   .++.+|+|--   +..+..+.+.     ......||+.+| .+++.+|+.+|.        
T Consensus        76 gnyYGT~~~~ve~~~~---~G~~vildId---~qGa~qvk~~-----~p~~v~IFi~pPs~eeL~~RL~~Rg--------  136 (191)
T COG0194          76 GNYYGTSREPVEQALA---EGKDVILDID---VQGALQVKKK-----MPNAVSIFILPPSLEELERRLKGRG--------  136 (191)
T ss_pred             CCcccCcHHHHHHHHh---cCCeEEEEEe---hHHHHHHHHh-----CCCeEEEEEcCCCHHHHHHHHHccC--------
Confidence                   122222222   2345666532   2222322221     223345555544 478888888874        


Q ss_pred             ecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          174 YHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       174 ~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                               .++.+.+.+|+...+.......+ |    .++.+|  .+.+..++++..++.
T Consensus       137 -------------------------tds~e~I~~Rl~~a~~Ei~~~~~-f----dyvivN--dd~e~a~~~l~~ii~  181 (191)
T COG0194         137 -------------------------TDSEEVIARRLENAKKEISHADE-F----DYVIVN--DDLEKALEELKSIIL  181 (191)
T ss_pred             -------------------------CCCHHHHHHHHHHHHHHHHHHHh-C----CEEEEC--ccHHHHHHHHHHHHH
Confidence                                     77889999999988877665444 3    455565  577888888877663

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=99.07  E-value=9.8e-09  Score=87.05  Aligned_cols=94  Identities=17%  Similarity=0.190  Sum_probs=52.3

Q ss_pred             ccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC-CCCCCceEE
Q 025529           42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK-PSCQKGFIL  120 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~-~~~~~~~Ii  120 (251)
                      |+|++||||||+++.|.. .|+..++--.                           ..++..++...... ....-.+++
T Consensus        11 i~G~~GsGKtt~~~~l~~-~g~~~~d~~~---------------------------~~L~~~l~~~~~~~~~~~~~av~i   62 (288)
T PRK05416         11 VTGLSGAGKSVALRALED-LGYYCVDNLP---------------------------PSLLPKLVELLAQSGGIRKVAVVI   62 (288)
T ss_pred             EECCCCCcHHHHHHHHHH-cCCeEECCcC---------------------------HHHHHHHHHHHHhcCCCCCeEEEE
Confidence            349999999999999964 5876654311                           12222222221111 111224556


Q ss_pred             eCCCCCH-HHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          121 DGFPRTE-VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       121 dg~~~~~-~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                      |-..... .........+...+. ...+|||+++.+++.+|+..+
T Consensus        63 D~r~~~~~~~~~~~~~~L~~~g~-~~~iI~L~a~~e~L~~Rl~~~  106 (288)
T PRK05416         63 DVRSRPFFDDLPEALDELRERGI-DVRVLFLDASDEVLIRRYSET  106 (288)
T ss_pred             ccCchhhHHHHHHHHHHHHHcCC-cEEEEEEECCHHHHHHHHhhc
Confidence            6542221 122222233334433 236799999999999999754

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.07  E-value=3.1e-09  Score=82.96  Aligned_cols=151  Identities=15%  Similarity=0.172  Sum_probs=82.9

Q ss_pred             CCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCH-------HHHHHHHHHHHcCCCCCC
Q 025529           44 GPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD-------DLVVGIIDEAMKKPSCQK  116 (251)
Q Consensus        44 G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~~ll~~~l~~~~~~~  116 (251)
                      |++||||||+++.|++.+|..+++.|.+.....         +.. ...|....+       ..+.........  ....
T Consensus         2 G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   69 (163)
T PRK11545          2 GVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IEK-MASGEPLNDDDRKPWLQALNDAAFAMQR--TNKV   69 (163)
T ss_pred             CCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hcc-ccCCCCCChhhHHHHHHHHHHHHHHHHH--cCCc
Confidence            999999999999999999999998875421100         000 000111101       111111111111  1222


Q ss_pred             ceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCccc
Q 025529          117 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQ  196 (251)
Q Consensus       117 ~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  196 (251)
                      .+|+-.+.  .....   ..+...+ .+-.+|+|++|.+++.+|+..|..+                             
T Consensus        70 ~viv~s~~--~~~~r---~~~~~~~-~~~~~v~l~a~~~~l~~Rl~~R~~~-----------------------------  114 (163)
T PRK11545         70 SLIVCSAL--KKHYR---DLLREGN-PNLSFIYLKGDFDVIESRLKARKGH-----------------------------  114 (163)
T ss_pred             eEEEEecc--hHHHH---HHHHccC-CCEEEEEEECCHHHHHHHHHhccCC-----------------------------
Confidence            34553332  33222   2222232 3457899999999999999998521                             


Q ss_pred             CCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          197 RKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       197 r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                       . .+.+.+...+..+.    +   .-.....++.||++.+++++.+.+...+.
T Consensus       115 -~-a~~~vl~~Q~~~~e----p---~~~~e~~~~~id~~~~~~~~~~~~~~~~~  159 (163)
T PRK11545        115 -F-FKTQMLVTQFETLQ----E---PGADETDVLVVDIDQPLEGVVASTIEVIK  159 (163)
T ss_pred             -C-CCHHHHHHHHHHcC----C---CCCCCCCEEEEeCCCCHHHHHHHHHHHHH
Confidence             0 13334443332221    1   10111257889999999999999888764

>TIGR00017 cmk cytidylate kinase

Probab=99.06  E-value=7.8e-09  Score=84.38  Aligned_cols=38  Identities=29%  Similarity=0.487  Sum_probs=33.0

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA   75 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~   75 (251)
                      +.|.|.     ||+||||||+++.|++++++.+++.+++.+..
T Consensus         3 ~~i~i~-----G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~   40 (217)
T TIGR00017         3 MIIAID-----GPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI   40 (217)
T ss_pred             eEEEEE-----CCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence            345555     99999999999999999999999999887654

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=99.06  E-value=5.8e-09  Score=79.77  Aligned_cols=176  Identities=20%  Similarity=0.212  Sum_probs=98.6

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh-CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~  110 (251)
                      .+.+++.     |.||+||||+++...+.+ +++.++.++++-+......  .-..++.+.   .+|.+....+...+..
T Consensus         4 ~kvvvit-----GVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~g--lve~rD~~R---klp~e~Q~~lq~~Aa~   73 (189)
T COG2019           4 RKVVVIT-----GVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKG--LVEHRDEMR---KLPLENQRELQAEAAK   73 (189)
T ss_pred             ceEEEEE-----cCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhC--CcccHHHHh---cCCHHHHHHHHHHHHH
Confidence            4566777     999999999999999999 8889999998766433211  011222222   3455555554444333


Q ss_pred             CCCCCCc-eEEeCCCCCHHHHHH---HH-HHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCC
Q 025529          111 KPSCQKG-FILDGFPRTEVQAQK---LD-EMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG  185 (251)
Q Consensus       111 ~~~~~~~-~Iidg~~~~~~~~~~---l~-~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~  185 (251)
                      ....... .|+|++........+   |. |++..  .+||.++.|..+++.++.|-.....                   
T Consensus        74 rI~~~~~~iivDtH~~IkTP~GylpgLP~~Vl~~--l~pd~ivllEaDp~~Il~RR~~D~~-------------------  132 (189)
T COG2019          74 RIAEMALEIIVDTHATIKTPAGYLPGLPSWVLEE--LNPDVIVLLEADPEEILERRLRDSR-------------------  132 (189)
T ss_pred             HHHHhhhceEEeccceecCCCccCCCCcHHHHHh--cCCCEEEEEeCCHHHHHHHHhcccc-------------------
Confidence            2221112 778865332222211   12 12221  6899999999999988877543311                   


Q ss_pred             CCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCc-EEEE-cCCCChhHHHHHHHHHhc
Q 025529          186 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGI-VAQL-HAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       186 ~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~-~~~i-d~~~~~eev~~~i~~~l~  250 (251)
                               -.|.-++.+.++..++.-+-.   ...+....|- +..+ +.+..+|+-.++|...|.
T Consensus       133 ---------r~Rd~es~e~i~eHqe~nR~a---A~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~  187 (189)
T COG2019         133 ---------RDRDVESVEEIREHQEMNRAA---AMAYAILLGATVKIVENHEGDPEEAAEEIVELLD  187 (189)
T ss_pred             ---------cccccccHHHHHHHHHHHHHH---HHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence                     013344555665544322111   1122222333 3223 445789998888887764

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.06  E-value=9.8e-09  Score=81.24  Aligned_cols=110  Identities=22%  Similarity=0.222  Sum_probs=57.3

Q ss_pred             ccCCCCCChhHHHHHHHHHh---C--CceechhHHHHHHHH-cCCchHHH-HHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025529           42 LAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVA-AKTPLGIK-AKEAMDKGELVSDDLVVGIIDEAMKKPSC  114 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~~~~-~~~~~~~~-i~~~l~~~~~~~~~~~~~ll~~~l~~~~~  114 (251)
                      ++|+|||||||+|+.|++.+   +  ..++..|.+ +-... ..-+..+. .++.+       .+-..+++..++.    
T Consensus         6 lTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~-~~i~~DEslpi~ke~yres~-------~ks~~rlldSalk----   73 (261)
T COG4088           6 LTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL-RGILWDESLPILKEVYRESF-------LKSVERLLDSALK----   73 (261)
T ss_pred             EecCCCCCchHHHHHHHHHHHHhhhhccccchhhh-hheecccccchHHHHHHHHH-------HHHHHHHHHHHhc----
Confidence            44999999999999999988   2  233333221 11111 11111111 11211       1223345555554    


Q ss_pred             CCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          115 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       115 ~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                      +.-+|+|..-.-......|....... ..+-.+||+.+|.+++++|=..|
T Consensus        74 n~~VIvDdtNYyksmRrqL~ceak~~-~tt~ciIyl~~plDtc~rrN~er  122 (261)
T COG4088          74 NYLVIVDDTNYYKSMRRQLACEAKER-KTTWCIIYLRTPLDTCLRRNRER  122 (261)
T ss_pred             ceEEEEecccHHHHHHHHHHHHHHhc-CCceEEEEEccCHHHHHHhhccC
Confidence            33566775322222222222222222 34568999999999999986554

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.04  E-value=6.3e-09  Score=96.11  Aligned_cols=129  Identities=17%  Similarity=0.116  Sum_probs=72.0

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC------ceechhHHHHHHHHcCCchHHHHHHH
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL------CHLATGDMLRAAVAAKTPLGIKAKEA   89 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~------~~i~~~~li~~~~~~~~~~~~~i~~~   89 (251)
                      ++++.+.+.|.-..+.+..|++.     |.|||||||+++.|++.++.      .+++.|.+ ++.+.....+...-+. 
T Consensus       376 eV~~iL~~~~~~r~~~g~~Ivl~-----Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v-r~~l~ge~~f~~~er~-  448 (568)
T PRK05537        376 EVVAELRRTYPPRHKQGFTVFFT-----GLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV-RKHLSSELGFSKEDRD-  448 (568)
T ss_pred             HHHHHHHHHhccccCCCeEEEEE-----CCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH-HHhccCCCCCCHHHHH-
Confidence            44555555555444567778888     99999999999999999985      77777654 5433321111111110 


Q ss_pred             HHcCCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529           90 MDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT  162 (251)
Q Consensus        90 l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~  162 (251)
                               .+...+....-.....+.++|+|..............++...+  .-.+|+|++|.+++.+|..
T Consensus       449 ---------~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g--~fivV~L~~p~e~l~~R~r  510 (568)
T PRK05537        449 ---------LNILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYG--GFIEVHVATPLEVCEQRDR  510 (568)
T ss_pred             ---------HHHHHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcC--CEEEEEEcCCHHHHHHhcc
Confidence                     1111111111111123446677753222333344444544432  1258999999999999963

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.03  E-value=1.3e-08  Score=92.42  Aligned_cols=40  Identities=33%  Similarity=0.483  Sum_probs=35.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA   75 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~   75 (251)
                      +++.|+|.     ||+||||||+++.|+++||+.+++.+.+.|..
T Consensus       283 ~~~ii~i~-----G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~  322 (512)
T PRK13477        283 RQPIIAID-----GPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV  322 (512)
T ss_pred             CCcEEEEE-----CCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence            56777777     99999999999999999999999999888763

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=99.02  E-value=1.3e-08  Score=96.13  Aligned_cols=41  Identities=24%  Similarity=0.379  Sum_probs=37.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA   75 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~   75 (251)
                      .+.+.|++.     ||+||||||+++.|+++|++++++++.+.|..
T Consensus       440 ~~~~~i~i~-----g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~  480 (661)
T PRK11860        440 DRVPVICID-----GPTASGKGTVAARVAEALGYHYLDSGALYRLT  480 (661)
T ss_pred             cCcceEEee-----CCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence            346688888     99999999999999999999999999988775

>PRK06696 uridine kinase; Validated

Probab=99.02  E-value=2.2e-09  Score=88.10  Aligned_cols=54  Identities=20%  Similarity=0.167  Sum_probs=40.1

Q ss_pred             hhHHHHHHHHhhcc-CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCce--echhHHHH
Q 025529           15 VDLMTELLRRMKCA-SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCH--LATGDMLR   73 (251)
Q Consensus        15 ~~~~~~~~~~~~~~-~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~--i~~~~li~   73 (251)
                      .++..+++.++... +..+..|.|.     |++||||||+|+.|++.+   |.++  +++|++..
T Consensus         4 ~~~~~~la~~~~~~~~~~~~iI~I~-----G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~   63 (223)
T PRK06696          4 KQLIKELAEHILTLNLTRPLRVAID-----GITASGKTTFADELAEEIKKRGRPVIRASIDDFHN   63 (223)
T ss_pred             HHHHHHHHHHHHHhCCCCceEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence            35677888888653 4456666666     999999999999999999   5444  45777653

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.02  E-value=1e-08  Score=81.02  Aligned_cols=111  Identities=13%  Similarity=0.031  Sum_probs=60.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGI  104 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l  104 (251)
                      .+|..|+|.     |++||||||+++.|++++.     ..+++.+.+ ++...... ....-+..        .......
T Consensus         5 ~~~~~I~i~-----G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~-r~~~~~~~-~~~~~~~~--------~~~~~~~   69 (176)
T PRK05541          5 PNGYVIWIT-----GLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL-REILGHYG-YDKQSRIE--------MALKRAK   69 (176)
T ss_pred             CCCCEEEEE-----cCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH-HhhcCCCC-CCHHHHHH--------HHHHHHH
Confidence            356788888     9999999999999999985     556665543 33222110 00000000        0001111


Q ss_pred             HHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529          105 IDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT  162 (251)
Q Consensus       105 l~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~  162 (251)
                      +...+.  ..+..+|+|+... ......   ..... ..+.++|||++|++++.+|+.
T Consensus        70 l~~~l~--~~g~~VI~~~~~~-~~~~~~---~~~~~-~~~~~~v~l~~~~e~~~~R~~  120 (176)
T PRK05541         70 LAKFLA--DQGMIVIVTTISM-FDEIYA---YNRKH-LPNYFEVYLKCDMEELIRRDQ  120 (176)
T ss_pred             HHHHHH--hCCCEEEEEeCCc-HHHHHH---HHHhh-cCCeEEEEEeCCHHHHHHhch
Confidence            212221  1234577786532 211111   11111 234578999999999999975

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.02  E-value=8e-10  Score=86.71  Aligned_cols=112  Identities=17%  Similarity=0.165  Sum_probs=62.9

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCC--ceechhHHHHHHHHcCC----c---------hHHHHHHHHHcCCCcCHHHHHH
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRAAVAAKT----P---------LGIKAKEAMDKGELVSDDLVVG  103 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~--~~i~~~~li~~~~~~~~----~---------~~~~i~~~l~~~~~~~~~~~~~  103 (251)
                      ||+|.|++.|||||+++.|++.+.-  .++++|.+.........    .         .+...            ..+..
T Consensus         3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------~~~~~   70 (174)
T PF07931_consen    3 IIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLF------------RRLYA   70 (174)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHH------------HHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHH------------HHHHH
Confidence            4556699999999999999999964  57788777654222110    0         00111            11112


Q ss_pred             HHHHHHcC-CCCCCceEEeCCCCCHHH-HHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          104 IIDEAMKK-PSCQKGFILDGFPRTEVQ-AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       104 ll~~~l~~-~~~~~~~Iidg~~~~~~~-~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      .+...+.. ...+..+|+|........ .+.+..++.   ..+.+.|-+.||.+++.+|-..|.
T Consensus        71 ~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~---~~~vl~VgV~Cpleil~~RE~~Rg  131 (174)
T PF07931_consen   71 AMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLA---GLPVLFVGVRCPLEILERRERARG  131 (174)
T ss_dssp             HHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHT---TS-EEEEEEE--HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhC---CCceEEEEEECCHHHHHHHHHhcC
Confidence            22222222 224457899977655443 444445443   345688999999999999988874

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.00  E-value=2.2e-08  Score=80.95  Aligned_cols=164  Identities=18%  Similarity=0.220  Sum_probs=87.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCC----c----hHHHHHHHHHcCCCcCH----
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKT----P----LGIKAKEAMDKGELVSD----   98 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~----~----~~~~i~~~l~~~~~~~~----   98 (251)
                      ++..|+|.     ||+||||||+++.|+..++...+......++ ...+.    +    ....+......+..+..    
T Consensus         4 ~g~~i~i~-----G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~-p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (205)
T PRK00300          4 RGLLIVLS-----GPSGAGKSTLVKALLERDPNLQLSVSATTRA-PRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVF   77 (205)
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHHhhCccceeccCccccC-CCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEEC
Confidence            56678888     9999999999999999875322222221111 00000    0    01222233222222110    


Q ss_pred             -HH---HHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCcee
Q 025529           99 -DL---VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTY  174 (251)
Q Consensus        99 -~~---~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~  174 (251)
                       ..   ....+...+.   .+..+|+|.-+..   ...+..   ..+ .+..++++.++.+++.+|+..|.         
T Consensus        78 ~~~y~~~~~~i~~~l~---~g~~vi~dl~~~g---~~~l~~---~~~-~~~~I~i~~~s~~~l~~Rl~~R~---------  138 (205)
T PRK00300         78 GNYYGTPRSPVEEALA---AGKDVLLEIDWQG---ARQVKK---KMP-DAVSIFILPPSLEELERRLRGRG---------  138 (205)
T ss_pred             CccccCcHHHHHHHHH---cCCeEEEeCCHHH---HHHHHH---hCC-CcEEEEEECcCHHHHHHHHHhcC---------
Confidence             00   0111222221   2234566754322   222222   221 23335545677889999999873         


Q ss_pred             cccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          175 HTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       175 ~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                              .++.+.+++|+..+......    +...+ ++.++  .+++++.+++.++++
T Consensus       139 ------------------------~~~~~~i~~rl~~~~~~~~~----~~~~d-~vi~n--~~~e~~~~~l~~il~  183 (205)
T PRK00300        139 ------------------------TDSEEVIARRLAKAREEIAH----ASEYD-YVIVN--DDLDTALEELKAIIR  183 (205)
T ss_pred             ------------------------CCCHHHHHHHHHHHHHHHHh----HHhCC-EEEEC--CCHHHHHHHHHHHHH
Confidence                                    45677899999887765432    22222 33343  489999999998875

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.99  E-value=1.6e-08  Score=80.68  Aligned_cols=164  Identities=15%  Similarity=0.135  Sum_probs=90.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCc--------hHHHHHHHHHcCCCcCHH---
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP--------LGIKAKEAMDKGELVSDD---   99 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~--------~~~~i~~~l~~~~~~~~~---   99 (251)
                      +++.|+|.     ||+||||||+++.|.+.+.-.+++.....|. ..++..        --..+.+.+..|..+...   
T Consensus         3 ~~~~ivl~-----GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~-~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~   76 (186)
T PRK14737          3 SPKLFIIS-----SVAGGGKSTIIQALLEEHPDFLFSISCTTRA-PRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVH   76 (186)
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHhcCCccccccCccCCC-CCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEEC
Confidence            56778888     9999999999999998873223333332221 011100        013344444444433211   


Q ss_pred             -----HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecC-HHHHHHHHhcCcCCCCCCce
Q 025529          100 -----LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID-DAVLEERITGRWIHPSSGRT  173 (251)
Q Consensus       100 -----~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~-~e~~~~Rl~~r~~~~~~~~~  173 (251)
                           +-.+-+...+.   .++.+|+|.-+...   ..+...   . ...-++|++.+| .+.+.+|+..|.        
T Consensus        77 g~~YGt~~~~i~~~~~---~g~~~i~d~~~~g~---~~l~~~---~-~~~~~~Ifi~pps~e~l~~RL~~R~--------  138 (186)
T PRK14737         77 DNYYGTPKAFIEDAFK---EGRSAIMDIDVQGA---KIIKEK---F-PERIVTIFIEPPSEEEWEERLIHRG--------  138 (186)
T ss_pred             CeeecCcHHHHHHHHH---cCCeEEEEcCHHHH---HHHHHh---C-CCCeEEEEEECCCHHHHHHHHHhcC--------
Confidence                 11122222221   23457777543333   333221   1 111157888875 688999998773        


Q ss_pred             ecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          174 YHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       174 ~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                               ..+.+.+++|+........ ...++    .++ |+.+ ++++..+++.++|.
T Consensus       139 -------------------------~~s~e~i~~Rl~~~~~e~~-~~~~~----D~v-I~N~-dle~a~~ql~~ii~  183 (186)
T PRK14737        139 -------------------------TDSEESIEKRIENGIIELD-EANEF----DYK-IIND-DLEDAIADLEAIIC  183 (186)
T ss_pred             -------------------------CCCHHHHHHHHHHHHHHHh-hhccC----CEE-EECc-CHHHHHHHHHHHHh
Confidence                                     4466789999886443221 11112    233 4444 89999999998875

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.98  E-value=9.4e-10  Score=87.47  Aligned_cols=35  Identities=26%  Similarity=0.461  Sum_probs=30.8

Q ss_pred             eecccCCCCCChhHHHHHHHHHh-CCceechhHHHH
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDMLR   73 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~-~~~~i~~~~li~   73 (251)
                      ||+|+|++||||||+|+.|++.+ +..+++.|++..
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~   36 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK   36 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence            56778999999999999999999 688999987754

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.98  E-value=2.7e-09  Score=79.32  Aligned_cols=109  Identities=16%  Similarity=0.177  Sum_probs=53.8

Q ss_pred             ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC---CCCCC
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK---PSCQK  116 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~---~~~~~  116 (251)
                      |+|+|+|||||||+|+.|+++++..+.+      ............-.................++......   .....
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLGDIIRD------IAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGR   74 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCHHHHH------HHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCcHHHH------HHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCC
Confidence            4566999999999999999998221111      11111110000000011112222233322222222111   22345


Q ss_pred             ceEEeCCCCCHHHHHHHHHHHHhcCCCcCEE-EEEecCHHHHHHHHhcCc
Q 025529          117 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKV-LNFAIDDAVLEERITGRW  165 (251)
Q Consensus       117 ~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~v-I~L~~~~e~~~~Rl~~r~  165 (251)
                      .+|+|+........           ...... |+|+||++++.+|+..|.
T Consensus        75 ~~iid~~~~~~~~~-----------~~~~~~~i~L~~~~e~~~~R~~~R~  113 (129)
T PF13238_consen   75 NIIIDGILSNLELE-----------RLFDIKFIFLDCSPEELRKRLKKRG  113 (129)
T ss_dssp             CEEEEESSEEECET-----------TEEEESSEEEE--HHHHHHHHHCTT
T ss_pred             cEEEecccchhccc-----------ccceeeEEEEECCHHHHHHHHHhCC
Confidence            68888875432111           112223 999999999999999985

...

>PRK12338 hypothetical protein; Provisional

Probab=98.97  E-value=2e-08  Score=85.77  Aligned_cols=43  Identities=21%  Similarity=0.307  Sum_probs=35.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA   78 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~   78 (251)
                      +|..|++.     |+|||||||+|+.|++++|+.++..++.+++.+..
T Consensus         3 ~p~ii~i~-----G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~   45 (319)
T PRK12338          3 KPYVILIG-----SASGIGKSTIASELARTLNIKHLIETDFIREVVRG   45 (319)
T ss_pred             CcEEEEEE-----CCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence            45556666     99999999999999999999999777888886553

>PHA03132 thymidine kinase; Provisional

Probab=98.97  E-value=5.9e-09  Score=95.21  Aligned_cols=129  Identities=12%  Similarity=0.034  Sum_probs=72.3

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCC--CcC-HHHHH------
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE--LVS-DDLVV------  102 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~--~~~-~~~~~------  102 (251)
                      .+.|+|+     |+.||||||+++.|++.+|..++.+.+=+..+..-.+..+..+++.+.++.  ... ...+.      
T Consensus       257 ~~fIv~E-----GidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~F  331 (580)
T PHA03132        257 ACFLFLE-----GVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKF  331 (580)
T ss_pred             eEEEEEE-----CCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHH
Confidence            6788888     999999999999999998555444322111110001234566666665332  111 11111      


Q ss_pred             --------HHHHHH---Hc----CCCCCCceEEeCCCCCHHH-------------HHHHHHHHHhcC-CCcCEEEEEecC
Q 025529          103 --------GIIDEA---MK----KPSCQKGFILDGFPRTEVQ-------------AQKLDEMLEKQG-KKVDKVLNFAID  153 (251)
Q Consensus       103 --------~ll~~~---l~----~~~~~~~~Iidg~~~~~~~-------------~~~l~~~~~~~~-~~~~~vI~L~~~  153 (251)
                              ..++..   ..    ....+..+|.|.++..-..             ...+..++.... ..||++|||+++
T Consensus       332 A~Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~  411 (580)
T PHA03132        332 ATPFRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLN  411 (580)
T ss_pred             hhHHHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCC
Confidence                    111111   11    1122345678988754321             111222333222 358999999999


Q ss_pred             HHHHHHHHhcCc
Q 025529          154 DAVLEERITGRW  165 (251)
Q Consensus       154 ~e~~~~Rl~~r~  165 (251)
                      ++++++|+.+|.
T Consensus       412 pe~alkRIkkRg  423 (580)
T PHA03132        412 SEENLRRVKKRG  423 (580)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999884

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.96  E-value=1.3e-09  Score=103.68  Aligned_cols=36  Identities=36%  Similarity=0.505  Sum_probs=31.6

Q ss_pred             ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA   75 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~   75 (251)
                      |+|.|||||||||+++.|++++|+.+++++.+.|..
T Consensus         4 i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~   39 (712)
T PRK09518          4 VAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC   39 (712)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence            344499999999999999999999999999887763

>PRK07667 uridine kinase; Provisional

Probab=98.91  E-value=7.9e-09  Score=82.93  Aligned_cols=35  Identities=20%  Similarity=0.215  Sum_probs=28.0

Q ss_pred             ecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHH
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRA   74 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~   74 (251)
                      |+|+|++||||||+++.|++.++     ...++.|++...
T Consensus        20 IgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~   59 (193)
T PRK07667         20 LGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE   59 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence            34559999999999999999873     458888886544

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.90  E-value=2.5e-08  Score=78.70  Aligned_cols=36  Identities=17%  Similarity=0.231  Sum_probs=28.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDM   71 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~l   71 (251)
                      ++..|++.     |+|||||||+++.|+..+.     +.+++.|.+
T Consensus         3 ~g~~i~~~-----G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~   43 (175)
T PRK00889          3 RGVTVWFT-----GLSGAGKTTIARALAEKLREAGYPVEVLDGDAV   43 (175)
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence            34566777     9999999999999999882     566777654

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.89  E-value=1.7e-08  Score=81.21  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=28.6

Q ss_pred             eecccCCCCCChhHHHHHHHHHh---CCceechhHHH
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDML   72 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li   72 (251)
                      ||+|+|++||||||+++.|+..+   +..+++.|++.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~   37 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY   37 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence            56778999999999999999987   36778887754

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.89  E-value=8.7e-09  Score=81.58  Aligned_cols=162  Identities=17%  Similarity=0.195  Sum_probs=85.9

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCC----c----hHHHHHHHHHcCCCcCH------
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKT----P----LGIKAKEAMDKGELVSD------   98 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~----~----~~~~i~~~l~~~~~~~~------   98 (251)
                      ..|+++     ||+||||||+++.|+..++..+++.....++.. .+.    .    ....+...+..+..+..      
T Consensus         2 ~ii~l~-----G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (180)
T TIGR03263         2 LLIVIS-----GPSGVGKSTLVKALLEEDPNLKFSISATTRKPR-PGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGN   75 (180)
T ss_pred             cEEEEE-----CCCCCCHHHHHHHHHccCccccccccceeeCCC-CCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCe
Confidence            356666     999999999999999987554444332222110 000    0    00122233333322211      


Q ss_pred             --HHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecc
Q 025529           99 --DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHT  176 (251)
Q Consensus        99 --~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~  176 (251)
                        ......+...+.   .+..+|+|.-+   .....+...   . ..+..++++..+.+.+.+|+..|.           
T Consensus        76 ~y~~~~~~i~~~~~---~g~~vi~d~~~---~~~~~~~~~---~-~~~~~i~~~~~~~e~~~~Rl~~r~-----------  134 (180)
T TIGR03263        76 YYGTPKSPVEEALA---AGKDVLLEIDV---QGARQVKKK---F-PDAVSIFILPPSLEELERRLRKRG-----------  134 (180)
T ss_pred             eeCCcHHHHHHHHH---CCCeEEEECCH---HHHHHHHHh---C-CCcEEEEEECCCHHHHHHHHHHcC-----------
Confidence              011122223322   23457777542   222222222   1 233456656777899999998773           


Q ss_pred             cCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          177 KFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       177 ~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                            .+..+.+++|+..+...... ..++    .++.++ + +++++.+++.+.+.
T Consensus       135 ----------------------~~~~~~i~~rl~~~~~~~~~-~~~~----d~~i~n-~-~~~~~~~~l~~~~~  179 (180)
T TIGR03263       135 ----------------------TDSEEVIERRLAKAKKEIAH-ADEF----DYVIVN-D-DLEKAVEELKSIIL  179 (180)
T ss_pred             ----------------------CCCHHHHHHHHHHHHHHHhc-cccC----cEEEEC-C-CHHHHHHHHHHHHh
Confidence                                  34567888888877543221 1122    243344 3 78999999998874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PTZ00301 uridine kinase; Provisional

Probab=98.88  E-value=1.2e-08  Score=82.86  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=25.9

Q ss_pred             eecccCCCCCChhHHHHHHHHHh----C---CceechhHHH
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEY----C---LCHLATGDML   72 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~----~---~~~i~~~~li   72 (251)
                      ||+|+|+|||||||+|+.|++++    +   +..+..|++.
T Consensus         5 iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy   45 (210)
T PTZ00301          5 VIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY   45 (210)
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence            57788999999999999998776    2   2355666554

>TIGR00235 udk uridine kinase

Probab=98.88  E-value=1.6e-08  Score=82.01  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=30.9

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHH
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDM   71 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~l   71 (251)
                      .++++..+.|.     |++||||||+++.|+..++   ..+++.|+.
T Consensus         2 ~~~~g~vi~I~-----G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~   43 (207)
T TIGR00235         2 DKPKGIIIGIG-----GGSGSGKTTVARKIYEQLGKLEIVIISQDNY   43 (207)
T ss_pred             CCCCeEEEEEE-----CCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence            45667777777     9999999999999999875   456666654

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.87  E-value=2.9e-08  Score=90.46  Aligned_cols=103  Identities=17%  Similarity=0.142  Sum_probs=77.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM  109 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l  109 (251)
                      ..+..+++.     |+|||||||+|+.++...|+.+++.|.+-.                        .........+.+
T Consensus       367 ~~p~LVil~-----G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------------~~~~~~~a~~~L  417 (526)
T TIGR01663       367 APCEMVIAV-----GFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------------TQNCLTACERAL  417 (526)
T ss_pred             CCceEEEEE-----CCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------------HHHHHHHHHHHH
Confidence            456678888     999999999999999999999999987511                        011112222333


Q ss_pred             cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                         ..++.+|+|..-....+...+.++....+.. ..++++++|.+++.+|...|.
T Consensus       418 ---~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~-v~~i~~~~p~e~~~~Rn~~R~  469 (526)
T TIGR01663       418 ---DQGKRCAIDNTNPDAASRAKFLQCARAAGIP-CRCFLFNAPLAQAKHNIAFRE  469 (526)
T ss_pred             ---hCCCcEEEECCCCCHHHHHHHHHHHHHcCCe-EEEEEeCCCHHHHHHHHHhhc
Confidence               3346799999877777778777777777664 478899999999999999885

Note that the EC number for the kinase function is: 2.7.1.78

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.84  E-value=4.1e-08  Score=84.88  Aligned_cols=48  Identities=13%  Similarity=-0.083  Sum_probs=36.0

Q ss_pred             ceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          117 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       117 ~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      -+|+|...........+..+....+..+ .+||+++|.+++++|..+|.
T Consensus       129 lvilDd~fy~ks~Ryel~~LAr~~~~~~-~~V~ld~ple~~l~RN~~R~  176 (340)
T TIGR03575       129 CLVLDDNFYYQSMRYEVYQLARKYSLGF-CQLFLDCPVESCLLRNKQRP  176 (340)
T ss_pred             CceecCCCCCHHHHHHHHHHHHHhCCCE-EEEEEeCCHHHHHHHHhcCC
Confidence            3678876666666666666665555554 78999999999999999884

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.83  E-value=9e-09  Score=82.84  Aligned_cols=117  Identities=21%  Similarity=0.172  Sum_probs=62.3

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCc---eechhHHHHHHHHc----------CCc-------hHHHHHHHHHcCCCcCH
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLC---HLATGDMLRAAVAA----------KTP-------LGIKAKEAMDKGELVSD   98 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~---~i~~~~li~~~~~~----------~~~-------~~~~i~~~l~~~~~~~~   98 (251)
                      ||+|+|++||||||+|+.|++.++..   .|+.|++....-..          ..+       +.+.+. .+.+|+.+..
T Consensus        10 iIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~-~L~~g~~v~~   88 (218)
T COG0572          10 IIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLK-DLKQGKPVDL   88 (218)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHH-HHHcCCcccc
Confidence            34677999999999999999999854   66666654321000          000       112222 2223332211


Q ss_pred             HHH--HHHHHH-HHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529           99 DLV--VGIIDE-AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus        99 ~~~--~~ll~~-~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      -..  ...... ........+-+|++|+-....  +.+.       ...|+-||++++.+.++.|-..|.
T Consensus        89 P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr-------~~~d~kIfvdtd~D~RliRri~RD  149 (218)
T COG0572          89 PVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLR-------DLMDLKIFVDTDADVRLIRRIKRD  149 (218)
T ss_pred             cccchhcccccCCccccCCCcEEEEeccccccc--HHHH-------hhcCEEEEEeCCccHHHHHHHHHH
Confidence            111  111100 000111234567888743332  2222       235899999999999888866663

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.81  E-value=5e-08  Score=75.01  Aligned_cols=109  Identities=15%  Similarity=0.132  Sum_probs=57.5

Q ss_pred             ecccCCCCCChhHHHHHHHHHh---CC--ceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY---CL--CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC  114 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~---~~--~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~  114 (251)
                      |+|+|.|||||||+++.|++.+   +.  .+++.+. +++.+.....+...-          ....+..+..........
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~-~r~~l~~~~~~~~~~----------~~~~~~~~~~~a~~l~~~   70 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN-VRHGLNKDLGFSRED----------REENIRRIAEVAKLLADA   70 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH-HHHhhhhccCCCcch----------HHHHHHHHHHHHHHHHhC
Confidence            5566999999999999999998   54  3445444 333222111100000          011111111110001112


Q ss_pred             CCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529          115 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT  162 (251)
Q Consensus       115 ~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~  162 (251)
                      +..+|+|..-........+..++.   ..+..+|+|++|.+++.+|-.
T Consensus        71 G~~VIid~~~~~~~~R~~~~~l~~---~~~~~~i~l~~~~e~~~~R~~  115 (149)
T cd02027          71 GLIVIAAFISPYREDREAARKIIG---GGDFLEVFVDTPLEVCEQRDP  115 (149)
T ss_pred             CCEEEEccCCCCHHHHHHHHHhcC---CCCEEEEEEeCCHHHHHHhCc
Confidence            345677765333444444444432   234578999999999999954

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=98.80  E-value=4.1e-07  Score=75.08  Aligned_cols=129  Identities=18%  Similarity=0.219  Sum_probs=69.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec---hhHHH--------HHHHHc---CCchHHHHHHHHHc-CCC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA---TGDML--------RAAVAA---KTPLGIKAKEAMDK-GEL   95 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~---~~~li--------~~~~~~---~~~~~~~i~~~l~~-~~~   95 (251)
                      ....|++.     |+.|||||++|+.||+++|+.|+.   +|++.        +.....   .... -.++..... ...
T Consensus        70 nSkvI~Ve-----GnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~-~di~~Fy~dPS~d  143 (393)
T KOG3877|consen   70 NSKVIVVE-----GNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRL-PDISMFYKDPSGD  143 (393)
T ss_pred             cceEEEEe-----CCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCc-hhHHHhccCCCcc
Confidence            35578899     999999999999999999987664   33321        111100   0000 001110000 000


Q ss_pred             cCHHHHHHHHH-------HHHcC-CCCCCceEEeCCCCCH-HHHHHHHH-------------HHH----hcCCCcCEEEE
Q 025529           96 VSDDLVVGIID-------EAMKK-PSCQKGFILDGFPRTE-VQAQKLDE-------------MLE----KQGKKVDKVLN  149 (251)
Q Consensus        96 ~~~~~~~~ll~-------~~l~~-~~~~~~~Iidg~~~~~-~~~~~l~~-------------~~~----~~~~~~~~vI~  149 (251)
                      +......++..       .++.. +..+.|+|++..|.+- ...+.+..             .+.    ..-..|.++||
T Consensus       144 lsa~~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViY  223 (393)
T KOG3877|consen  144 LSAAMQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIY  223 (393)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEE
Confidence            11111111111       11221 2345799999877652 22222210             000    11268999999


Q ss_pred             EecCHHHHHHHHhcCc
Q 025529          150 FAIDDAVLEERITGRW  165 (251)
Q Consensus       150 L~~~~e~~~~Rl~~r~  165 (251)
                      |++|...+.+|++.|.
T Consensus       224 ld~Pv~~v~~~Ik~rg  239 (393)
T KOG3877|consen  224 LDTPVNKVLENIKRRG  239 (393)
T ss_pred             EcCCcHHHHHHHHhcC
Confidence            9999999999999885

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.80  E-value=2.4e-08  Score=76.82  Aligned_cols=109  Identities=17%  Similarity=0.172  Sum_probs=54.6

Q ss_pred             eecccCCCCCChhHHHHHHHHHh---C--CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS  113 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~  113 (251)
                      +|||+|.+||||||+|+.|.+++   |  ..+++.|.+ +..+.++-.+...-+.          +.+.++..-+-...+
T Consensus         4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l-R~~l~~dl~fs~~dR~----------e~~rr~~~~A~ll~~   72 (156)
T PF01583_consen    4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL-RHGLNADLGFSKEDRE----------ENIRRIAEVAKLLAD   72 (156)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH-CTTTTTT--SSHHHHH----------HHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch-hhccCCCCCCCHHHHH----------HHHHHHHHHHHHHHh
Confidence            46677999999999999999998   3  455666543 3323222111111111          111111111100111


Q ss_pred             CCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025529          114 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI  161 (251)
Q Consensus       114 ~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl  161 (251)
                      .+..+|+...-......+...+.+...   .-+-||++||.+++.+|-
T Consensus        73 ~G~ivIva~isp~~~~R~~~R~~~~~~---~f~eVyv~~~~e~~~~RD  117 (156)
T PF01583_consen   73 QGIIVIVAFISPYREDREWARELIPNE---RFIEVYVDCPLEVCRKRD  117 (156)
T ss_dssp             TTSEEEEE----SHHHHHHHHHHHHTT---EEEEEEEES-HHHHHHHT
T ss_pred             CCCeEEEeeccCchHHHHHHHHhCCcC---ceEEEEeCCCHHHHHHhC
Confidence            223455554333344444444443211   237899999999999994

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.79  E-value=1.9e-07  Score=74.23  Aligned_cols=112  Identities=17%  Similarity=0.105  Sum_probs=61.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh---C--CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGI  104 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l  104 (251)
                      .++..+++.     |++||||||+++.|+..+   |  ..+++.+. +++.+.....+...-+          ...+..+
T Consensus        16 ~~~~~i~i~-----G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~-~r~~l~~~~~~~~~~~----------~~~~~~~   79 (184)
T TIGR00455        16 HRGVVIWLT-----GLSGSGKSTIANALEKKLESKGYRVYVLDGDN-VRHGLNKDLGFSEEDR----------KENIRRI   79 (184)
T ss_pred             CCCeEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCcEEEECChH-HHhhhccccCCCHHHH----------HHHHHHH
Confidence            467788888     999999999999999987   2  34556554 3332222111110000          0111111


Q ss_pred             HHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025529          105 IDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER  160 (251)
Q Consensus       105 l~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~R  160 (251)
                      ..........+..+|+|...........+......   .+-.+|||++|.+++.+|
T Consensus        80 ~~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~---~~~~~v~l~~~~e~~~~R  132 (184)
T TIGR00455        80 GEVAKLFVRNGIIVITSFISPYRADRQMVRELIEK---GEFIEVFVDCPLEVCEQR  132 (184)
T ss_pred             HHHHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcC---CCeEEEEEeCCHHHHHHh
Confidence            11111112234567777643334444444433221   234689999999999998

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=98.78  E-value=3.3e-07  Score=88.06  Aligned_cols=39  Identities=31%  Similarity=0.426  Sum_probs=34.8

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV   76 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~   76 (251)
                      +.|+|-     ||+||||||+|+.||++|++.+++++.+.|...
T Consensus        35 ~~i~id-----G~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a   73 (863)
T PRK12269         35 VIIALD-----GPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT   73 (863)
T ss_pred             eEEEEE-----CCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence            456666     999999999999999999999999999988753

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=98.76  E-value=4.5e-08  Score=77.07  Aligned_cols=117  Identities=15%  Similarity=0.170  Sum_probs=68.2

Q ss_pred             eecccCCCCCChhHHHHHHHHHh-CCceechhHHHHHHHH--c--CC-------------chHHHHHHHHHcCCCcCHHH
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVA--A--KT-------------PLGIKAKEAMDKGELVSDDL  100 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~-~~~~i~~~~li~~~~~--~--~~-------------~~~~~i~~~l~~~~~~~~~~  100 (251)
                      ||+|+|...|||||+|+.|.+.| |...|+-|++....-+  .  +.             .....+...+.+....|+. 
T Consensus         6 ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~~a-   84 (225)
T KOG3308|consen    6 IVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAPEA-   84 (225)
T ss_pred             EEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccchH-
Confidence            57899999999999999999999 5677777776432211  0  00             1234455555554444331 


Q ss_pred             HHHHHHH--------HHcCCC-CCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          101 VVGIIDE--------AMKKPS-CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       101 ~~~ll~~--------~l~~~~-~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ...++..        +.+... ...-+|+|||-...  ...+.       ..++..|.+..+.+++++|-..|.
T Consensus        85 r~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~--y~p~~-------~~~d~~im~~~~y~~~krRr~~Rt  149 (225)
T KOG3308|consen   85 REHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYN--YKPQV-------DLFDRIIMLTLDYETCKRRREART  149 (225)
T ss_pred             hhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEe--cchhh-------hhhhhheeeeccHHHHHHhhcccc
Confidence            1111111        111111 12347889974321  11111       235788999999999999988774

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=98.75  E-value=5.9e-07  Score=75.15  Aligned_cols=146  Identities=19%  Similarity=0.261  Sum_probs=84.3

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCC-C-
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ-K-  116 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~-~-  116 (251)
                      +|+|+|.+||||||..+.|.+ +|+..++=                           +|..++..++.......... + 
T Consensus         3 ~vIiTGlSGaGKs~Al~~lED-~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~~   54 (284)
T PF03668_consen    3 LVIITGLSGAGKSTALRALED-LGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEKV   54 (284)
T ss_pred             EEEEeCCCcCCHHHHHHHHHh-cCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCceE
Confidence            455679999999999999966 68776541                           33444555544333222112 2 


Q ss_pred             ceEEeCCCCCHHHHHHHHHH---HHhcCCCcCEEEEEecCHHHHHHHHhcCc-CCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          117 GFILDGFPRTEVQAQKLDEM---LEKQGKKVDKVLNFAIDDAVLEERITGRW-IHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       117 ~~Iidg~~~~~~~~~~l~~~---~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~-~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      .+.+|-..  ......+.+.   +...+.. -.++||+++++++++|.+.-+ .|+...                     
T Consensus        55 Ai~iD~R~--~~~~~~~~~~~~~l~~~~~~-~~ilFLdA~d~~LirRy~eTRR~HPL~~---------------------  110 (284)
T PF03668_consen   55 AIVIDIRS--REFFEDLFEALDELRKKGID-VRILFLDASDEVLIRRYSETRRRHPLSS---------------------  110 (284)
T ss_pred             EEEEeCCC--hHHHHHHHHHHHHHHhcCCc-eEEEEEECChHHHHHHHHhccCCCCCCC---------------------
Confidence            45677432  2222222222   2233444 368899999999999987543 444321                     


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS  250 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~  250 (251)
                           .+...+.    +..-++...++.+..+     +.||++ .++.++-+.|.+.+.
T Consensus       111 -----~~~~le~----I~~Er~~L~~lr~~Ad-----~vIDTs~l~~~~Lr~~i~~~~~  155 (284)
T PF03668_consen  111 -----DGSLLEA----IEKERELLEPLRERAD-----LVIDTSNLSVHQLRERIRERFG  155 (284)
T ss_pred             -----CCCcHHH----HHHHHHHHHHHHHhCC-----EEEECCCCCHHHHHHHHHHHhc
Confidence                 1211222    3333444555555432     468885 889999998887653

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.73  E-value=1.8e-07  Score=75.30  Aligned_cols=112  Identities=15%  Similarity=0.120  Sum_probs=61.1

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh-----CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG  103 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~  103 (251)
                      +.+|..++|.     |++||||||+++.|+..+     +..+++.|++- +.+.....+.          ..-....+..
T Consensus        21 ~~~~~~i~i~-----G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~-~~~~~~~~~~----------~~~~~~~~~~   84 (198)
T PRK03846         21 GHKGVVLWFT-----GLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR-HGLCSDLGFS----------DADRKENIRR   84 (198)
T ss_pred             CCCCEEEEEE-----CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH-hhhhhcCCcC----------cccHHHHHHH
Confidence            4567788888     999999999999999987     34566655543 2211110000          0000122222


Q ss_pred             HHHHHHcCCCCCCceEEeCCCCC-HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025529          104 IIDEAMKKPSCQKGFILDGFPRT-EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER  160 (251)
Q Consensus       104 ll~~~l~~~~~~~~~Iidg~~~~-~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~R  160 (251)
                      +......... ....++..+... ......+.+++...   .-++|||++|.+++.+|
T Consensus        85 l~~~a~~~~~-~G~~VI~~~~~~~~~~R~~~r~~l~~~---~~i~V~L~~~~e~~~~R  138 (198)
T PRK03846         85 VGEVAKLMVD-AGLVVLTAFISPHRAERQMVRERLGEG---EFIEVFVDTPLAICEAR  138 (198)
T ss_pred             HHHHHHHHhh-CCCEEEEEeCCCCHHHHHHHHHHcccC---CEEEEEEcCCHHHHHhc
Confidence            2111111111 123455556543 34555555554322   22479999999999999

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.73  E-value=9.2e-08  Score=78.30  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=27.1

Q ss_pred             eecccCCCCCChhHHHHHHHHHhC-------CceechhHH
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYC-------LCHLATGDM   71 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~-------~~~i~~~~l   71 (251)
                      ||+|+|++||||||+++.|+..+.       +.+++.|++
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f   40 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF   40 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence            578889999999999999999883       345667765

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.71  E-value=3.8e-07  Score=75.19  Aligned_cols=50  Identities=24%  Similarity=0.389  Sum_probs=38.7

Q ss_pred             ccCCCCchhHHHHHHHHhhc---cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529            8 NLEDVPSVDLMTELLRRMKC---ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .|.+.+-+.+...+++.+..   .+.++..+.|.     |++||||||+++.|+..+.
T Consensus         6 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iigi~-----G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270          6 QYRDEEIEAVHKPLLRRLAALQAEPQRRTIVGIA-----GPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             ccChHhHHHHHHHHHHHHHHHHhcCCCCEEEEEE-----CCCCCCHHHHHHHHHHHhh
Confidence            45666777888888888752   23566667777     9999999999999998873

>COG0645 Predicted kinase [General function prediction only]

Probab=98.70  E-value=3.3e-07  Score=70.61  Aligned_cols=115  Identities=17%  Similarity=0.205  Sum_probs=73.8

Q ss_pred             ccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHc-----CCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCC
Q 025529           42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-----KTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK  116 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~-----~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~  116 (251)
                      +.|.|||||||+++.|++.+|..+|..|.+. +.+..     ..+.|..-.       .........+.......+..+.
T Consensus         6 ~~Gl~GsGKstlA~~l~~~lgA~~lrsD~ir-k~L~g~p~~~r~~~g~ys~-------~~~~~vy~~l~~~A~l~l~~G~   77 (170)
T COG0645           6 VGGLPGSGKSTLARGLAELLGAIRLRSDVIR-KRLFGVPEETRGPAGLYSP-------AATAAVYDELLGRAELLLSSGH   77 (170)
T ss_pred             EecCCCccHhHHHHHHHhhcCceEEehHHHH-HHhcCCcccccCCCCCCcH-------HHHHHHHHHHHHHHHHHHhCCC
Confidence            3399999999999999999999999997754 43443     111000000       0001223333333222333456


Q ss_pred             ceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          117 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       117 ~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      .+|+|+..-...+......+....+.. -..|.+.++.+++.+|+..|+
T Consensus        78 ~VVlDa~~~r~~~R~~~~~~A~~~gv~-~~li~~~ap~~v~~~rl~aR~  125 (170)
T COG0645          78 SVVLDATFDRPQERALARALARDVGVA-FVLIRLEAPEEVLRGRLAARK  125 (170)
T ss_pred             cEEEecccCCHHHHHHHHHHHhccCCc-eEEEEcCCcHHHHHHHHHHhC
Confidence            799998766666666655555544443 367899999999999999996

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.66  E-value=3.5e-07  Score=77.03  Aligned_cols=107  Identities=17%  Similarity=0.115  Sum_probs=55.4

Q ss_pred             cccCCCCCChhHHHHHHHHHh-----CCceechhHHHHHHHHcC----CchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025529           41 WLAGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAK----TPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK  111 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~~~-----~~~~i~~~~li~~~~~~~----~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~  111 (251)
                      +|+|.|||||||+|+.|++.+     .+.+++.+.+.   +...    +...+.++..           +...+...+. 
T Consensus         5 il~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~y~~~~~Ek~~R~~-----------l~s~v~r~ls-   69 (270)
T PF08433_consen    5 ILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRNDYADSKKEKEARGS-----------LKSAVERALS-   69 (270)
T ss_dssp             EEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSSS--GGGHHHHHHH-----------HHHHHHHHHT-
T ss_pred             EEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhhhhchhhhHHHHHH-----------HHHHHHHhhc-
Confidence            344999999999999999986     34456644443   1111    1111222221           2222223332 


Q ss_pred             CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          112 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       112 ~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                        ...-+|+|+.-......-.|..+....+.. ..+||+++|.+.+++|=..|.
T Consensus        70 --~~~iVI~Dd~nYiKg~RYelyclAr~~~~~-~c~i~~~~~~e~~~~~N~~R~  120 (270)
T PF08433_consen   70 --KDTIVILDDNNYIKGMRYELYCLARAYGTT-FCVIYCDCPLETCLQRNSKRP  120 (270)
T ss_dssp             --T-SEEEE-S---SHHHHHHHHHHHHHTT-E-EEEEEEE--HHHHHHHHHHTT
T ss_pred             --cCeEEEEeCCchHHHHHHHHHHHHHHcCCC-EEEEEECCCHHHHHHhhhccC
Confidence              234678888655555455555555555544 478999999999999977774

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.66  E-value=1.7e-06  Score=73.40  Aligned_cols=41  Identities=20%  Similarity=0.285  Sum_probs=32.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc-eechhHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC-HLATGDMLRAAV   76 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~-~i~~~~li~~~~   76 (251)
                      ++|+.|++.     |++||||||+|..|+++||.. +++. |.+++.+
T Consensus        90 ~~p~iIlI~-----G~sgsGKStlA~~La~~l~~~~vi~~-D~~re~~  131 (301)
T PRK04220         90 KEPIIILIG-----GASGVGTSTIAFELASRLGIRSVIGT-DSIREVM  131 (301)
T ss_pred             CCCEEEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEec-hHHHHHH
Confidence            467777777     999999999999999999987 5665 4455433

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.66  E-value=4.9e-08  Score=64.87  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=19.6

Q ss_pred             ecccCCCCCChhHHHHHHHHHh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~   61 (251)
                      |+|+|+|||||||+++.|++.+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5566999999999999999985

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.66  E-value=1.7e-08  Score=81.09  Aligned_cols=24  Identities=38%  Similarity=0.531  Sum_probs=22.7

Q ss_pred             eecccCCCCCChhHHHHHHHHHhC
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      ||+|+|++||||||+|+.|+..++
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            688999999999999999999996

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PLN02348 phosphoribulokinase

Probab=98.65  E-value=8.4e-08  Score=83.86  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=20.3

Q ss_pred             ecccCCCCCChhHHHHHHHHHhC
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~   62 (251)
                      |+|+|++||||||+++.|++.++
T Consensus        52 IGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         52 IGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            34559999999999999999986

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.64  E-value=1.5e-07  Score=75.84  Aligned_cols=120  Identities=21%  Similarity=0.313  Sum_probs=68.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCc-------CHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELV-------SDD   99 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~-------~~~   99 (251)
                      ..|..+++-     |+|||||||++..+.+.+   ++.+|+.|++....     +....+...  .....       ...
T Consensus        13 ~~P~~~i~a-----G~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~-----p~~~~~~~~--~~~~~~~~~~~~a~~   80 (199)
T PF06414_consen   13 EKPTLIIIA-----GQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH-----PDYDELLKA--DPDEASELTQKEASR   80 (199)
T ss_dssp             SS-EEEEEE-----S-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS-----TTHHHHHHH--HCCCTHHHHHHHHHH
T ss_pred             cCCEEEEEe-----CCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc-----cchhhhhhh--hhhhhHHHHHHHHHH
Confidence            467778888     999999999999999987   67889988753221     111111110  00000       012


Q ss_pred             HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       100 ~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      +...++...+..   +..+|+|+..........+...+...|... .++++.+|++..+.|...|.
T Consensus        81 ~~~~~~~~a~~~---~~nii~E~tl~~~~~~~~~~~~~k~~GY~v-~l~~v~~~~e~s~~rv~~R~  142 (199)
T PF06414_consen   81 LAEKLIEYAIEN---RYNIIFEGTLSNPSKLRKLIREAKAAGYKV-ELYYVAVPPELSIERVRQRY  142 (199)
T ss_dssp             HHHHHHHHHHHC---T--EEEE--TTSSHHHHHHHHHHHCTT-EE-EEEEE---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCEEEecCCCChhHHHHHHHHHHcCCceE-EEEEEECCHHHHHHHHHHHH
Confidence            233344444433   347999997776666665666666677764 56789999999999998885

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK07429 phosphoribulokinase; Provisional

Probab=98.63  E-value=6e-07  Score=77.59  Aligned_cols=38  Identities=24%  Similarity=0.195  Sum_probs=30.1

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDM   71 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~l   71 (251)
                      +.++..|.|.     |++||||||+++.|+..++   ..++..|++
T Consensus         5 ~~~~~IIgI~-----G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~   45 (327)
T PRK07429          5 PDRPVLLGVA-----GDSGCGKTTFLRGLADLLGEELVTVICTDDY   45 (327)
T ss_pred             CCCCEEEEEE-----CCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence            3455566666     9999999999999999987   556777765

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.61  E-value=4.5e-07  Score=76.62  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=27.1

Q ss_pred             eecccCCCCCChhHHHHHHHHHh---CCceechhHH
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDM   71 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~l   71 (251)
                      ||+|+|++||||||+++.|+..+   +..++..|++
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~   36 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY   36 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence            46777999999999999999887   4556777765

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.59  E-value=5.4e-07  Score=69.79  Aligned_cols=105  Identities=16%  Similarity=0.194  Sum_probs=54.3

Q ss_pred             cccCCCCCChhHHHHHHHHHh---CC--ceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCC
Q 025529           41 WLAGPPGSGKGTQSPIIKDEY---CL--CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ  115 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~~~---~~--~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~  115 (251)
                      |++|.+||||||+|..|.+++   |.  .+++- |-+|..+..+-.+...-+..-  -.  --..+..++.    .   .
T Consensus        27 W~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG-DnvR~gL~~dLgFs~edR~en--iR--RvaevAkll~----d---a   94 (197)
T COG0529          27 WFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG-DNVRHGLNRDLGFSREDRIEN--IR--RVAEVAKLLA----D---A   94 (197)
T ss_pred             EeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC-hhHhhcccCCCCCChHHHHHH--HH--HHHHHHHHHH----H---C
Confidence            455999999999999999998   43  33343 445554443221111111100  00  0011122221    1   1


Q ss_pred             CceEEeCCCCCHHHHHHH-HHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025529          116 KGFILDGFPRTEVQAQKL-DEMLEKQGKKVDKVLNFAIDDAVLEER  160 (251)
Q Consensus       116 ~~~Iidg~~~~~~~~~~l-~~~~~~~~~~~~~vI~L~~~~e~~~~R  160 (251)
                      ..+++..|.........+ .+.+.   ...-+=||++||.+++.+|
T Consensus        95 G~iviva~ISP~r~~R~~aR~~~~---~~~FiEVyV~~pl~vce~R  137 (197)
T COG0529          95 GLIVIVAFISPYREDRQMARELLG---EGEFIEVYVDTPLEVCERR  137 (197)
T ss_pred             CeEEEEEeeCccHHHHHHHHHHhC---cCceEEEEeCCCHHHHHhc
Confidence            234466665554433332 23321   1123678999999999999

>COG4639 Predicted kinase [General function prediction only]

Probab=98.57  E-value=1.5e-06  Score=65.91  Aligned_cols=113  Identities=22%  Similarity=0.206  Sum_probs=72.0

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC-C
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK-P  112 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~-~  112 (251)
                      .++++     |++||||||.++...  .....++.+++-+..       |....+...++   .+..+.+++...+.. +
T Consensus         4 LvvL~-----G~~~sGKsT~ak~n~--~~~~~lsld~~r~~l-------g~~~~~e~sqk---~~~~~~~~l~~~l~qrl   66 (168)
T COG4639           4 LVVLR-----GASGSGKSTFAKENF--LQNYVLSLDDLRLLL-------GVSASKENSQK---NDELVWDILYKQLEQRL   66 (168)
T ss_pred             EEEEe-----cCCCCchhHHHHHhC--CCcceecHHHHHHHh-------hhchhhhhccc---cHHHHHHHHHHHHHHHH
Confidence            35566     999999999998643  256788888763321       11111111111   133344444443332 2


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                      ..++..|+|..-....+...+..+...++..+ ++|+++.|.+.+.+|-+.|
T Consensus        67 ~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~-~~ivfdtp~~~c~aRNk~~  117 (168)
T COG4639          67 RRGKFTIIDATNLRREDRRKLIDLAKAYGYKI-YAIVFDTPLELCLARNKLR  117 (168)
T ss_pred             HcCCeEEEEcccCCHHHHHHHHHHHHHhCCeE-EEEEEeCCHHHHHHHhhcc
Confidence            34567899988777777777777777777765 6689999999999997644

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.54  E-value=7.9e-07  Score=83.78  Aligned_cols=112  Identities=11%  Similarity=0.041  Sum_probs=61.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh-----CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII  105 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll  105 (251)
                      ++..|++.     |.|||||||+|+.|++++     +..+++.|++ |+.+..+..+....+          ..++..+.
T Consensus       459 ~~~~i~~~-----G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~-r~~l~~~~~~~~~~r----------~~~~~~l~  522 (632)
T PRK05506        459 KPATVWFT-----GLSGSGKSTIANLVERRLHALGRHTYLLDGDNV-RHGLNRDLGFSDADR----------VENIRRVA  522 (632)
T ss_pred             CcEEEEec-----CCCCchHHHHHHHHHHHHHHcCCCEEEEcChhh-hhccCCCCCCCHHHH----------HHHHHHHH
Confidence            56777777     999999999999999997     3466777654 443322111111111          11222222


Q ss_pred             HHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025529          106 DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI  161 (251)
Q Consensus       106 ~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl  161 (251)
                      .........+..+|+|...........+.+.+..   .+-.+|||++|.+++.+|.
T Consensus       523 ~~a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~---~~~~~v~L~~~~e~~~~R~  575 (632)
T PRK05506        523 EVARLMADAGLIVLVSFISPFREERELARALHGE---GEFVEVFVDTPLEVCEARD  575 (632)
T ss_pred             HHHHHHHhCCCEEEEECCCCCHHHHHHHHHhccc---CCeEEEEECCCHHHHHhhC
Confidence            1111111223456677532223343433333211   1347899999999999993

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=98.54  E-value=4.3e-06  Score=68.61  Aligned_cols=146  Identities=17%  Similarity=0.262  Sum_probs=88.0

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH-cCC-CCCC
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM-KKP-SCQK  116 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l-~~~-~~~~  116 (251)
                      ||.|+|.+|||||+..+.|.+ +|+..++=                           +|..++-.+++... ... ...-
T Consensus         3 lvIVTGlSGAGKsvAl~~lED-lGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~kv   54 (286)
T COG1660           3 LVIVTGLSGAGKSVALRVLED-LGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITKV   54 (286)
T ss_pred             EEEEecCCCCcHHHHHHHHHh-cCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCceE
Confidence            455679999999999999966 67765431                           34444555544222 111 1223


Q ss_pred             ceEEeCCCCCHHHHHHHHHHHH---hc-CCCcCEEEEEecCHHHHHHHHhcC-cCCCCCCceecccCCCCCCCCCCCCCC
Q 025529          117 GFILDGFPRTEVQAQKLDEMLE---KQ-GKKVDKVLNFAIDDAVLEERITGR-WIHPSSGRTYHTKFAPPKVPGVDDVTG  191 (251)
Q Consensus       117 ~~Iidg~~~~~~~~~~l~~~~~---~~-~~~~~~vI~L~~~~e~~~~Rl~~r-~~~~~~~~~~~~~~~~p~~~~~~~~~~  191 (251)
                      .+++|-  ++......+.+.+.   .. +..+ -++||+++.+++.+|.+.- +.|+..+                    
T Consensus        55 Av~iDi--Rs~~~~~~l~~~l~~l~~~~~~~~-~iLFLeA~~~~Lv~RY~etRR~HPL~~--------------------  111 (286)
T COG1660          55 AVVIDV--RSREFFGDLEEVLDELKDNGDIDP-RVLFLEADDETLVRRYSETRRSHPLSE--------------------  111 (286)
T ss_pred             EEEEec--ccchhHHHHHHHHHHHHhcCCCCc-eEEEEECchhHHHHHHhhhhhcCCCCc--------------------
Confidence            566774  33344444444443   23 2233 5778999999999998754 4454322                    


Q ss_pred             CCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529          192 EPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS  250 (251)
Q Consensus       192 ~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~  250 (251)
                            .+.    +..-|..-++...++.+..+     ++||++ .++-++.+.|.+.+.
T Consensus       112 ------~~~----l~~~I~~ERelL~pLk~~A~-----~vIDTs~ls~~~Lr~~i~~~f~  156 (286)
T COG1660         112 ------DGL----LLEAIAKERELLAPLREIAD-----LVIDTSELSVHELRERIRTRFL  156 (286)
T ss_pred             ------cCc----HHHHHHHHHHHHHHHHHHhh-----hEeecccCCHHHHHHHHHHHHc
Confidence                  111    44444555555566665543     367874 899999999988764

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.53  E-value=8.6e-06  Score=72.79  Aligned_cols=40  Identities=15%  Similarity=0.265  Sum_probs=32.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCce-echhHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH-LATGDMLRAA   75 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~-i~~~~li~~~   75 (251)
                      ++|..|++.     |++||||||++..|+.++|+.+ +++| .+++.
T Consensus       253 k~p~vil~~-----G~~G~GKSt~a~~LA~~lg~~~ii~tD-~iR~~  293 (475)
T PRK12337        253 PRPLHVLIG-----GVSGVGKSVLASALAYRLGITRIVSTD-AVREV  293 (475)
T ss_pred             CCCeEEEEE-----CCCCCCHHHHHHHHHHHcCCcEEeehh-HHHHH
Confidence            467788888     9999999999999999999984 4664 44443

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.50  E-value=2.2e-07  Score=73.66  Aligned_cols=35  Identities=29%  Similarity=0.418  Sum_probs=30.2

Q ss_pred             eecccCCCCCChhHHHHHHHHHh-----CCceechhHHHH
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLR   73 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~~~li~   73 (251)
                      ||+|+|++||||||+|+.|++.+     +...++.|++.+
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~   40 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV   40 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence            46788999999999999999997     457889998875

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK05439 pantothenate kinase; Provisional

Probab=98.46  E-value=9.4e-08  Score=81.68  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=25.9

Q ss_pred             ecccCCCCCChhHHHHHHHHHhC-------CceechhHHH
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYC-------LCHLATGDML   72 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~-------~~~i~~~~li   72 (251)
                      |+|+|+|||||||+|+.|++.++       +.++++|+++
T Consensus        89 IgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy  128 (311)
T PRK05439         89 IGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL  128 (311)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence            34559999999999999998663       4567777764

>PHA00729 NTP-binding motif containing protein

Probab=98.44  E-value=5e-06  Score=67.76  Aligned_cols=113  Identities=15%  Similarity=0.061  Sum_probs=61.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc--eechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA  108 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~--~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~  108 (251)
                      .-.+|+|+     |+||+||||+|..|+++++..  .+..++...   .+..           ....++...+.+.+...
T Consensus        16 ~f~nIlIt-----G~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~---d~~~-----------~~~fid~~~Ll~~L~~a   76 (226)
T PHA00729         16 GFVSAVIF-----GKQGSGKTTYALKVARDVFWKLNNLSTKDDAW---QYVQ-----------NSYFFELPDALEKIQDA   76 (226)
T ss_pred             CeEEEEEE-----CCCCCCHHHHHHHHHHHHHhhcccccchhhHH---hcCC-----------cEEEEEHHHHHHHHHHH
Confidence            34578888     999999999999999987521  222221100   0000           01112222233333333


Q ss_pred             HcCCCCCCceEEeCCCCCHHH---H-------HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          109 MKKPSCQKGFILDGFPRTEVQ---A-------QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       109 l~~~~~~~~~Iidg~~~~~~~---~-------~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ........-+|+|++..-...   .       -.+..++.   ..+++++++.++++.+.+++..|.
T Consensus        77 ~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLr---SR~~l~il~~ls~edL~~~Lr~Rg  140 (226)
T PHA00729         77 IDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIR---TRVSAVIFTTPSPEDLAFYLREKG  140 (226)
T ss_pred             HhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHH---hhCcEEEEecCCHHHHHHHHHhCC
Confidence            322111123588884322111   0       11233332   346889999999999999999875

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.40  E-value=1.3e-06  Score=69.47  Aligned_cols=26  Identities=35%  Similarity=0.696  Sum_probs=22.2

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      +..++|+     ||+||||+|+++.|.+.+.
T Consensus         2 ~r~ivl~-----Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    2 RRPIVLV-----GPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSEEEEE-----SSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEE-----CCCCCCHHHHHHHHHHhcc
Confidence            3457777     9999999999999999874

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.40  E-value=3.3e-07  Score=77.80  Aligned_cols=24  Identities=17%  Similarity=0.275  Sum_probs=19.8

Q ss_pred             CCcCEEEEEecCHHHHHHHHhcCc
Q 025529          142 KKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       142 ~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ..+|+.||+++|.+.+.+|+..|.
T Consensus       195 d~~D~~IyvDa~~d~~~~w~i~R~  218 (290)
T TIGR00554       195 DFVDFSIYVDAEEDLLQTWYINRF  218 (290)
T ss_pred             HhCCEEEEEECCHHHHHHHHHHHH
Confidence            347999999999999988876663

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=98.33  E-value=1.9e-06  Score=68.33  Aligned_cols=116  Identities=14%  Similarity=0.107  Sum_probs=56.8

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCC-------chHHHHH--HH---HHcC-------CCcCHH
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKT-------PLGIKAK--EA---MDKG-------ELVSDD   99 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~-------~~~~~i~--~~---l~~~-------~~~~~~   99 (251)
                      ||+|+|..|||++++|+.||+++|+++++- +++........       .......  ..   +..+       ......
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD   79 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence            678889999999999999999999999998 66544332210       0001100  11   1100       111122


Q ss_pred             HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       100 ~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      .+.......+........+|+.|.....        ++.  +....+-|+|.+|.+...+|++.+.
T Consensus        80 ~~~~~~~~~i~~la~~~~~Vi~GR~a~~--------il~--~~~~~l~V~i~A~~~~Rv~ri~~~~  135 (179)
T PF13189_consen   80 KIFRAQSEIIRELAAKGNCVIVGRCANY--------ILR--DIPNVLHVFIYAPLEFRVERIMERE  135 (179)
T ss_dssp             HHHHHHHHHHHHHHH---EEEESTTHHH--------HTT--T-TTEEEEEEEE-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCEEEEecCHhh--------hhC--CCCCeEEEEEECCHHHHHHHHHHHc
Confidence            2223222233222222356665542111        111  1233588999999999999999873

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=98.33  E-value=2.6e-05  Score=63.67  Aligned_cols=155  Identities=20%  Similarity=0.245  Sum_probs=84.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh---C--CceechhHHHHHHHHc---------CCchHHHHHHHHHcCCC
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAA---------KTPLGIKAKEAMDKGEL   95 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~~~~~---------~~~~~~~i~~~l~~~~~   95 (251)
                      ..+..|++.     |-|+.|||++|+.|+..+   |  ..+++++++-|+....         ..+.+..+++.+.    
T Consensus        10 ~~kl~ivmV-----GLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a----   80 (222)
T PF01591_consen   10 AGKLVIVMV-----GLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA----   80 (222)
T ss_dssp             ---EEEEEE-----SSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH----
T ss_pred             CCCEEEEEE-----CCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH----
Confidence            356678888     999999999999999877   3  3688999987776654         1233334443221    


Q ss_pred             cCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH-HhcCcCCCCCCcee
Q 025529           96 VSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER-ITGRWIHPSSGRTY  174 (251)
Q Consensus        96 ~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~R-l~~r~~~~~~~~~~  174 (251)
                        ...+.+++ .-+.. ..+.--|+|+.-.+......+.+.+...+.. .++|..-|+++.++++ +......   ..+|
T Consensus        81 --~~~l~dl~-~~l~~-~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~-vlFIEsic~D~~ii~~NI~~~~~~---spDY  152 (222)
T PF01591_consen   81 --KEALEDLI-EWLQE-EGGQVAIFDATNSTRERRKMLVERFKEHGIK-VLFIESICDDPEIIERNIREKKQN---SPDY  152 (222)
T ss_dssp             --HHHHHHHH-HHHHT-S--SEEEEES---SHHHHHHHHHHHHHTT-E-EEEEEEE---HHHHHHHHHHHHTT---SGGG
T ss_pred             --HHHHHHHH-HHHhc-CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCc-EEEEEEEeCCHHHHHHHHHHHHcC---Cccc
Confidence              12222222 22221 1234578999988999999888888777643 2555666777766655 4433211   0111


Q ss_pred             cccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHH
Q 025529          175 HTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVI  220 (251)
Q Consensus       175 ~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~  220 (251)
                      .                   ..-++...+.+.+|++.|....+++.
T Consensus       153 ~-------------------~~~~e~A~~Df~~RI~~Ye~~YEpl~  179 (222)
T PF01591_consen  153 K-------------------GMDPEEAIEDFKKRIEHYEKVYEPLD  179 (222)
T ss_dssp             T-------------------TS-HHHHHHHHHHHHHHHHTT-----
T ss_pred             c-------------------cCCHHHHHHHHHHHHHhhcccccccc
Confidence            1                   00123345778899999999998876

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PLN02772 guanylate kinase

Probab=98.30  E-value=1.9e-05  Score=69.31  Aligned_cols=166  Identities=16%  Similarity=0.197  Sum_probs=84.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCC-ceechhHHHHHHHH---cCCch----HHHHHHHHHcCCCcCHH---
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL-CHLATGDMLRAAVA---AKTPL----GIKAKEAMDKGELVSDD---   99 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~-~~i~~~~li~~~~~---~~~~~----~~~i~~~l~~~~~~~~~---   99 (251)
                      ..+.++|.     ||+||||+|+.+.|.+.+.. ..+......|..-.   .+..+    -..+.+.+.++..+.-.   
T Consensus       134 ~~k~iVls-----GPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~  208 (398)
T PLN02772        134 AEKPIVIS-----GPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVH  208 (398)
T ss_pred             CCcEEEEE-----CCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeec
Confidence            34467777     99999999999999887632 11222222111000   00000    02233344444332211   


Q ss_pred             -----HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCcee
Q 025529          100 -----LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTY  174 (251)
Q Consensus       100 -----~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~  174 (251)
                           +-...+...+.   ..+.+|+|--+....+..   ..    ...+..++++..+.+++.+|+..|.         
T Consensus       209 Gn~YGTsk~~V~~vl~---~Gk~vILdLD~qGar~Lr---~~----~l~~v~IFI~PPSlEeLe~RL~~RG---------  269 (398)
T PLN02772        209 GNLYGTSIEAVEVVTD---SGKRCILDIDVQGARSVR---AS----SLEAIFIFICPPSMEELEKRLRARG---------  269 (398)
T ss_pred             CccccccHHHHHHHHH---hCCcEEEeCCHHHHHHHH---Hh----cCCeEEEEEeCCCHHHHHHHHHhcC---------
Confidence                 11122222221   234566664443333332   21    1233334444455789999998874         


Q ss_pred             cccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHH--HHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          175 HTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVI--DYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       175 ~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~--~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                              ..+.+.+++|+..+........  .+|    .++.++  .++++.++++.++|.
T Consensus       270 ------------------------teseE~I~kRL~~A~~Ei~~~~~~~~f----D~vIvN--DdLe~A~~~L~~iL~  317 (398)
T PLN02772        270 ------------------------TETEEQIQKRLRNAEAELEQGKSSGIF----DHILYN--DNLEECYKNLKKLLG  317 (398)
T ss_pred             ------------------------CCCHHHHHHHHHHHHHHHhhccccCCC----CEEEEC--CCHHHHHHHHHHHHh
Confidence                                    3456789999988755332100  112    233344  389999999988773

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.21  E-value=5.8e-05  Score=61.87  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=32.8

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHH
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA   77 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~   77 (251)
                      .++.|..|+|=     |++|.||||+|..+|.++|+.++-..|.+|+.+.
T Consensus        85 ~~~~p~IILIG-----GasGVGkStIA~ElA~rLgI~~visTD~IREvlR  129 (299)
T COG2074          85 KMKRPLIILIG-----GASGVGKSTIAGELARRLGIRSVISTDSIREVLR  129 (299)
T ss_pred             ccCCCeEEEec-----CCCCCChhHHHHHHHHHcCCceeecchHHHHHHH
Confidence            34455555555     7899999999999999999976644455555554

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.15  E-value=5.6e-06  Score=75.93  Aligned_cols=32  Identities=22%  Similarity=0.385  Sum_probs=25.6

Q ss_pred             ecccCCCCCChhHHHHHHHHHh-CCceechhHH
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDM   71 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~-~~~~i~~~~l   71 (251)
                      |+|+||+||||||+++.|+..+ +...|+.|+.
T Consensus        68 IGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy  100 (656)
T PLN02318         68 VGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY  100 (656)
T ss_pred             EEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence            3455999999999999999987 4457777764

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=98.05  E-value=9e-05  Score=56.76  Aligned_cols=66  Identities=17%  Similarity=0.222  Sum_probs=49.6

Q ss_pred             CEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHh
Q 025529          145 DKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYS  224 (251)
Q Consensus       145 ~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~  224 (251)
                      -.++.+.++++.+.+||..|.                                 .++.+.+..|+..-..       +-.
T Consensus       116 Llvv~ita~p~VLaqRL~~RG---------------------------------REs~eeI~aRL~R~a~-------~~~  155 (192)
T COG3709         116 LLVVCITASPEVLAQRLAERG---------------------------------RESREEILARLARAAR-------YTA  155 (192)
T ss_pred             ceeEEEecCHHHHHHHHHHhc---------------------------------cCCHHHHHHHHHhhcc-------ccc
Confidence            368899999999999999984                                 4466788888754221       111


Q ss_pred             hCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          225 KKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       225 ~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                      ..+.++.||.++.++..-+...+.|.
T Consensus       156 ~~~dv~~idNsG~l~~ag~~ll~~l~  181 (192)
T COG3709         156 GPGDVTTIDNSGELEDAGERLLALLH  181 (192)
T ss_pred             CCCCeEEEcCCCcHHHHHHHHHHHHH
Confidence            24579999999999998888776653

>PHA03136 thymidine kinase; Provisional

Probab=98.04  E-value=0.00044  Score=60.34  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=21.9

Q ss_pred             CCcCEEEEEecCHHHHHHHHhcCc
Q 025529          142 KKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       142 ~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ..||.+|||+++.+++.+|+.+|.
T Consensus       190 p~pD~IIyL~l~~e~~~~RI~kRg  213 (378)
T PHA03136        190 PHGGNIVIMDLDECEHAERIIARG  213 (378)
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHcC
Confidence            368899999999999999999985

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=97.97  E-value=0.00059  Score=53.91  Aligned_cols=29  Identities=17%  Similarity=0.149  Sum_probs=24.5

Q ss_pred             HHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          137 LEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       137 ~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      +.+....+|.+|||.++++++.+|+..|.
T Consensus       147 ~~~~~v~~dgiIYLrasPetc~~Ri~~R~  175 (244)
T KOG4235|consen  147 LRSMDVSLDGIIYLRASPETCYKRIYLRA  175 (244)
T ss_pred             HhccccccceEEEeecChHHHHHHHHHHh
Confidence            33434689999999999999999999885

>PRK15453 phosphoribulokinase; Provisional

Probab=97.94  E-value=3.3e-05  Score=64.91  Aligned_cols=38  Identities=11%  Similarity=0.185  Sum_probs=29.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDML   72 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li   72 (251)
                      ++++.|.+.     |++||||||+++.|++.++     ..+++.|++.
T Consensus         3 ~k~piI~It-----G~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh   45 (290)
T PRK15453          3 AKHPIIAVT-----GSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH   45 (290)
T ss_pred             CCCcEEEEE-----CCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence            355666666     9999999999999998874     3456666654

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.88  E-value=1.2e-05  Score=59.83  Aligned_cols=28  Identities=29%  Similarity=0.498  Sum_probs=24.1

Q ss_pred             ccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           42 LAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      |.||||+||||+++.+++.++++++..+
T Consensus         3 l~G~~G~GKT~l~~~la~~l~~~~~~i~   30 (132)
T PF00004_consen    3 LHGPPGTGKTTLARALAQYLGFPFIEID   30 (132)
T ss_dssp             EESSTTSSHHHHHHHHHHHTTSEEEEEE
T ss_pred             EECcCCCCeeHHHHHHHhhccccccccc
Confidence            4499999999999999999998776553

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2

Probab=97.86  E-value=4.1e-06  Score=47.72  Aligned_cols=36  Identities=58%  Similarity=0.955  Sum_probs=30.2

Q ss_pred             CcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCC
Q 025529          164 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD  199 (251)
Q Consensus       164 r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~  199 (251)
                      |+.++.+|+.||..|+||..+++++.|+..|.+|.+
T Consensus         1 Rr~C~~Cg~~Yh~~~~pP~~~~~Cd~cg~~L~qR~D   36 (36)
T PF05191_consen    1 RRICPKCGRIYHIEFNPPKVEGVCDNCGGELVQRKD   36 (36)
T ss_dssp             EEEETTTTEEEETTTB--SSTTBCTTTTEBEBEEGG
T ss_pred             CcCcCCCCCccccccCCCCCCCccCCCCCeeEeCCC
Confidence            456788999999999999999999999999988753

7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=97.84  E-value=1.4e-05  Score=66.29  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=22.3

Q ss_pred             CCcCEEEEEecCHHHHHHHHhcCcC
Q 025529          142 KKVDKVLNFAIDDAVLEERITGRWI  166 (251)
Q Consensus       142 ~~~~~vI~L~~~~e~~~~Rl~~r~~  166 (251)
                      .-+|+.||++++.+.+.+|+..|..
T Consensus       209 dffDfSIyvDa~~~~le~wyi~Rfl  233 (283)
T COG1072         209 DFFDFSIYVDADEELLEERYIERFL  233 (283)
T ss_pred             ccceEEEEecCCHHHHHHHHHHHHH
Confidence            4579999999999999999998863

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=97.81  E-value=0.00029  Score=54.28  Aligned_cols=28  Identities=18%  Similarity=0.335  Sum_probs=26.3

Q ss_pred             CCCCCChhHHHHHHHHHhC-CceechhHH
Q 025529           44 GPPGSGKGTQSPIIKDEYC-LCHLATGDM   71 (251)
Q Consensus        44 G~~gsGKST~a~~La~~~~-~~~i~~~~l   71 (251)
                      +.+||||||++..|++-|| +.|+.-|++
T Consensus         6 AtiGCGKTTva~aL~~LFg~wgHvQnDnI   34 (168)
T PF08303_consen    6 ATIGCGKTTVALALSNLFGEWGHVQNDNI   34 (168)
T ss_pred             cCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence            8999999999999999999 999988875

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.78  E-value=0.001  Score=50.99  Aligned_cols=108  Identities=14%  Similarity=0.153  Sum_probs=57.8

Q ss_pred             CCCCCChhHHHHHHHHHh--CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCceEEe
Q 025529           44 GPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILD  121 (251)
Q Consensus        44 G~~gsGKST~a~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iid  121 (251)
                      ||.||||||+...+-..+  ++.+++.|.+..+ +.+..+....++.         .......+...+.   ...+|..+
T Consensus         9 G~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~-i~p~~p~~~~i~A---------~r~ai~~i~~~I~---~~~~F~~E   75 (187)
T COG4185           9 GPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQ-ISPDNPTSAAIQA---------ARVAIDRIARLID---LGRPFIAE   75 (187)
T ss_pred             cCCCCCceeeeeccchhhcCCeEEECHHHHhhh-cCCCCchHHHHHH---------HHHHHHHHHHHHH---cCCCcceE
Confidence            999999999887665555  5788899876543 4444443222222         1112222222222   23456665


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          122 GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       122 g~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      .........+.+. -.++.|.-..+.+..--+.|...+|++.|-
T Consensus        76 TtLS~~s~~~~ik-~Ak~~Gf~I~L~y~~i~~~elavERVk~RV  118 (187)
T COG4185          76 TTLSGPSILELIK-TAKAAGFYIVLNYIVIDSVELAVERVKLRV  118 (187)
T ss_pred             EeeccchHHHHHH-HHHhCCeEEEEEEEEeCcHHHHHHHHHHHH
Confidence            4433333333222 223445544444444456678899988874

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=97.78  E-value=0.0027  Score=52.11  Aligned_cols=185  Identities=10%  Similarity=0.069  Sum_probs=98.5

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCchHHHHHHHHH-cCC--CcCHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGE--LVSDDLVV  102 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~--~~~~~~~~  102 (251)
                      .+.|..|+|.     |..||||..+.+.|.+.++   +.+.+...--..  +...++-..+-..+- .|.  .....+..
T Consensus        28 ~~~~vlIv~e-----G~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~e--E~~~p~lwRfw~~lP~~G~i~IF~rSwY~  100 (230)
T TIGR03707        28 TGARVVIVFE-----GRDAAGKGGTIKRITEHLNPRGARVVALPKPSDR--ERTQWYFQRYVQHLPAAGEIVLFDRSWYN  100 (230)
T ss_pred             cCCCEEEEEe-----CCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHH--HHcChHHHHHHHhCCCCCeEEEEeCchhh
Confidence            4568889999     9999999999999999984   333333211001  011122222212111 111  01122333


Q ss_pred             HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCC
Q 025529          103 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPK  182 (251)
Q Consensus       103 ~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~  182 (251)
                      +.+..++.....     -..+.....+...|+..+...|.. -+-++|.+|.++..+|+..|..++.+.           
T Consensus       101 ~~lv~rv~~~~~-----~~~~~~~~~~I~~FEr~L~~~G~~-IlKfflhIsk~eQ~kRl~~r~~~p~k~-----------  163 (230)
T TIGR03707       101 RAGVERVMGFCT-----DEEYEEFLRQVPEFERMLVRDGIH-LFKYWLSVSREEQLRRFKARIDDPLKQ-----------  163 (230)
T ss_pred             hHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHHHHCCCE-EEEEEEECCHHHHHHHHHHHhcCCccc-----------
Confidence            333333321100     000112234455666777766664 367899999999999999886433211           


Q ss_pred             CCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhh-CCcEEEEcCCCChhH---HHHHHHHHhc
Q 025529          183 VPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQE---VTSEVQKALS  250 (251)
Q Consensus       183 ~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~~ee---v~~~i~~~l~  250 (251)
                                   ++-....-...+++..|...+..++..-+. ...|+.|+++..--.   +.+.|.+.|+
T Consensus       164 -------------Wk~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~i~~~l~  222 (230)
T TIGR03707       164 -------------WKLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDKKRARLNAIRHILSRLD  222 (230)
T ss_pred             -------------ccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHhCC
Confidence                         112222333445667777777666655442 346999999744332   3345555443

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.00016  Score=66.64  Aligned_cols=125  Identities=18%  Similarity=0.277  Sum_probs=68.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh--HHHHHHHHcCC--------------c---hHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG--DMLRAAVAAKT--------------P---LGIKAKEAM   90 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~--~li~~~~~~~~--------------~---~~~~i~~~l   90 (251)
                      .+|..+++.     ||||+|||++++.||..-+..++++.  +++.++.....              +   +..++....
T Consensus       466 ~ppkGVLly-----GPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~  540 (693)
T KOG0730|consen  466 SPPKGVLLY-----GPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALA  540 (693)
T ss_pred             CCCceEEEE-----CCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHh
Confidence            466679999     99999999999999999998888873  45444433211              1   111222221


Q ss_pred             H----cCCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529           91 D----KGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus        91 ~----~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                      .    ++..+.+.++..++. .++.....+++++-+-.....+.   +..+- ....+|-+||+..|+......+.+.
T Consensus       541 ~~R~g~~~~v~~RVlsqLLt-EmDG~e~~k~V~ViAATNRpd~I---D~ALl-RPGRlD~iiyVplPD~~aR~~Ilk~  613 (693)
T KOG0730|consen  541 GSRGGSSSGVTDRVLSQLLT-EMDGLEALKNVLVIAATNRPDMI---DPALL-RPGRLDRIIYVPLPDLEARLEILKQ  613 (693)
T ss_pred             hccCCCccchHHHHHHHHHH-HcccccccCcEEEEeccCChhhc---CHHHc-CCcccceeEeecCccHHHHHHHHHH
Confidence            1    111233444444442 22333333455443221111111   11111 2346899999999998777776544

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=97.77  E-value=0.0002  Score=67.99  Aligned_cols=118  Identities=19%  Similarity=0.165  Sum_probs=60.9

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec-----hhHHHHHHHHcCC----chHHHHHHHHHcCCCcCHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA-----TGDMLRAAVAAKT----PLGIKAKEAMDKGELVSDDLVV  102 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~-----~~~li~~~~~~~~----~~~~~i~~~l~~~~~~~~~~~~  102 (251)
                      ...++++     |.||+||||+++.|++.+++..++     .+.+-++......    +.+..-.+         .....
T Consensus       215 ~~~~~~v-----glp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e---------~~~~~  280 (664)
T PTZ00322        215 SLIVIMV-----GLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVE---------FRIAK  280 (664)
T ss_pred             ceeEEec-----ccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHH---------HHHHH
Confidence            3455556     999999999999999998655443     4343322211110    00000000         11111


Q ss_pred             HHHH---HHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCC-C--cCEEEEEecCHHHHHHHHhcCc
Q 025529          103 GIID---EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGK-K--VDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       103 ~ll~---~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~-~--~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      .++.   ..+..  .+.+.|+|+.-.+......+.+.+...+. .  ..+.|..-|++..++++-..|+
T Consensus       281 ~~~~d~~~~v~~--~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~  347 (664)
T PTZ00322        281 AIAHDMTTFICK--TDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRA  347 (664)
T ss_pred             HHHHHHHHHHhc--CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHH
Confidence            2221   11222  23478899877776666655555555443 1  2244444566666666655443

>PLN02165 adenylate isopentenyltransferase

Probab=97.77  E-value=2.8e-05  Score=67.00  Aligned_cols=39  Identities=23%  Similarity=0.348  Sum_probs=34.7

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM   71 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l   71 (251)
                      .+.++..++|+     ||+||||||++..|++.++..+++.|.+
T Consensus        39 ~~~~g~iivIi-----GPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         39 QNCKDKVVVIM-----GATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             cCCCCCEEEEE-----CCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            35667788999     9999999999999999999999999875

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.76  E-value=0.00036  Score=62.05  Aligned_cols=109  Identities=20%  Similarity=0.301  Sum_probs=56.8

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh----C--CceechhHHHHHHHHcCCchHHHHHHHHHcCC-C-cCHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY----C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-L-VSDDLVVG  103 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~----~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-~-~~~~~~~~  103 (251)
                      +..++++     ||+||||||++..|+..+    |  +.+++.| ..|...      ...++.+..... . ........
T Consensus       223 ~~vi~lv-----GptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D-t~R~aA------~eQLk~yAe~lgvp~~~~~~~~~  290 (432)
T PRK12724        223 RKVVFFV-----GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD-NYRIAA------IEQLKRYADTMGMPFYPVKDIKK  290 (432)
T ss_pred             CeEEEEE-----CCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc-chhhhH------HHHHHHHHHhcCCCeeehHHHHH
Confidence            4557777     999999999999999765    2  3344443 333211      123333322211 1 11111222


Q ss_pred             HHHHHHcCCCCCCceEEe--CCC-CCHHHHHHHHHHHHhcCC--CcCEEEEEecCH
Q 025529          104 IIDEAMKKPSCQKGFILD--GFP-RTEVQAQKLDEMLEKQGK--KVDKVLNFAIDD  154 (251)
Q Consensus       104 ll~~~l~~~~~~~~~Iid--g~~-~~~~~~~~l~~~~~~~~~--~~~~vI~L~~~~  154 (251)
                       +...+.. ...+.+++|  |++ +...+...|.+++...+.  ....++.|++..
T Consensus       291 -l~~~l~~-~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~  344 (432)
T PRK12724        291 -FKETLAR-DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS  344 (432)
T ss_pred             -HHHHHHh-CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence             2233322 223568899  664 567788888777654322  223444455443

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.76  E-value=0.00011  Score=59.00  Aligned_cols=120  Identities=14%  Similarity=0.187  Sum_probs=58.8

Q ss_pred             EEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH-HHcCC--c----hHHH-----HHHHHHcCCCcCHHHHH
Q 025529           35 LILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA-VAAKT--P----LGIK-----AKEAMDKGELVSDDLVV  102 (251)
Q Consensus        35 i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~-~~~~~--~----~~~~-----i~~~l~~~~~~~~~~~~  102 (251)
                      ++|+     ||+|+|||.+|-.||+++|.++|+.|.+.... +.-++  +    +...     ....+..|. ++.+..+
T Consensus         4 ~~i~-----GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~   77 (233)
T PF01745_consen    4 YLIV-----GPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAH   77 (233)
T ss_dssp             EEEE------STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHH
T ss_pred             EEEE-----CCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHH
Confidence            5666     99999999999999999999999998643221 11111  1    0000     011222333 5566667


Q ss_pred             HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcC--CCcCEEEEEecCHH-HHHHHHhcC
Q 025529          103 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQG--KKVDKVLNFAIDDA-VLEERITGR  164 (251)
Q Consensus       103 ~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~--~~~~~vI~L~~~~e-~~~~Rl~~r  164 (251)
                      +.+...+......+++|++|.-  +.-...+.+.  ...  .-.-.+.++.++++ .-+.|...|
T Consensus        78 ~~Li~~v~~~~~~~~~IlEGGS--ISLl~~m~~~--~~w~~~f~w~i~rl~l~d~~~f~~ra~~R  138 (233)
T PF01745_consen   78 ERLISEVNSYSAHGGLILEGGS--ISLLNCMAQD--PYWSLDFRWHIRRLRLPDEEVFMARAKRR  138 (233)
T ss_dssp             HHHHHHHHTTTTSSEEEEEE----HHHHHHHHH---TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCceEEeCch--HHHHHHHHhc--ccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence            7777777777667789999873  2222222211  111  11225667777775 555555554

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=97.74  E-value=3e-05  Score=62.91  Aligned_cols=38  Identities=21%  Similarity=0.315  Sum_probs=30.6

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCce-echhHHHHHHHH
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCH-LATGDMLRAAVA   77 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~-i~~~~li~~~~~   77 (251)
                      ||+|+|.|||||||+++.+.+. |.++ +++++.++..+.
T Consensus         2 iI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~   40 (227)
T PHA02575          2 LIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILA   40 (227)
T ss_pred             EEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHH
Confidence            5667799999999999999776 5555 899888777654

>PF13173 AAA_14: AAA domain

Probab=97.71  E-value=0.00035  Score=52.02  Aligned_cols=97  Identities=18%  Similarity=0.202  Sum_probs=55.6

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhC----CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYC----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM  109 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l  109 (251)
                      .+++.     ||.|+||||+++.+++.+.    +.+++.++.-.....          .         .+ +.+.+.+..
T Consensus         4 ~~~l~-----G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~----------~---------~~-~~~~~~~~~   58 (128)
T PF13173_consen    4 IIILT-----GPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA----------D---------PD-LLEYFLELI   58 (128)
T ss_pred             eEEEE-----CCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh----------h---------hh-hHHHHHHhh
Confidence            45666     9999999999999998875    667776653221000          0         00 122222221


Q ss_pred             cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025529          110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER  160 (251)
Q Consensus       110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~R  160 (251)
                      ..  ....+++|.+.........+..+.. .  .++.-|++..|......+
T Consensus        59 ~~--~~~~i~iDEiq~~~~~~~~lk~l~d-~--~~~~~ii~tgS~~~~l~~  104 (128)
T PF13173_consen   59 KP--GKKYIFIDEIQYLPDWEDALKFLVD-N--GPNIKIILTGSSSSLLSK  104 (128)
T ss_pred             cc--CCcEEEEehhhhhccHHHHHHHHHH-h--ccCceEEEEccchHHHhh
Confidence            11  2345778987655444444444433 2  256778888888766644

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.70  E-value=4.3e-05  Score=59.99  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=25.6

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhC--Cceechh
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLATG   69 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~~   69 (251)
                      |.+++.     |+|||||||+|..|+..++  +.++.+.
T Consensus         2 ~~ili~-----G~~~sGKS~~a~~l~~~~~~~~~~iat~   35 (170)
T PRK05800          2 MLILVT-----GGARSGKSRFAERLAAQSGLQVLYIATA   35 (170)
T ss_pred             CEEEEE-----CCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence            456666     9999999999999999986  4555554

>PRK09169 hypothetical protein; Validated

Probab=97.69  E-value=0.00061  Score=70.27  Aligned_cols=110  Identities=10%  Similarity=0.035  Sum_probs=76.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~  110 (251)
                      ....++++     |.+|+||||+++.|++.+++.++++|..+.+      ..|+.|.+++...+ ...+.-...+.+.+.
T Consensus      2109 ~~~aIvLI-----G~MGaGKTTIGr~LA~~Lg~~FiDtD~kIek------s~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr 2176 (2316)
T PRK09169       2109 GAQARRIE-----REVGPLLQALLQKLAGGLRVDKPHSVRKIAK------KIGKKIARIQALRG-LSPEQAAARVRDALR 2176 (2316)
T ss_pred             hhccccee-----eCCCCCHhHHHHHHHHHhCCCccccHHHHHH------HhCCCHHHHHHhcC-chHHHHHHHHHHHhc
Confidence            34468999     9999999999999999999999999988876      45677777776554 555555555655542


Q ss_pred             CCCCCCceEE--eCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          111 KPSCQKGFIL--DGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       111 ~~~~~~~~Ii--dg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                           ...|+  +|+.........   .+...    .++||+..+.+++.+|+...
T Consensus      2177 -----~~vVLSTGGGav~~~enr~---~L~~~----GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169       2177 -----WEVVLPAEGFGAAVEQARQ---ALGAK----GLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred             -----CCeEEeCCCCcccCHHHHH---HHHHC----CEEEEEECCHHHHHHHhccC
Confidence                 13343  344333333322   22222    47999999999999998754

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=97.68  E-value=0.0057  Score=51.22  Aligned_cols=183  Identities=11%  Similarity=0.070  Sum_probs=95.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCchHHHHHHHHH-cCCC--cCHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGEL--VSDDLVVG  103 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~--~~~~~~~~  103 (251)
                      ..|..|+|.     |..||||..+.+.|.+.++   +.+.+...--..  +...+.-...-..+- .|..  ....+..+
T Consensus        54 ~~~vlIv~e-----G~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~e--E~~~p~lWRfw~~lP~~G~i~IF~RSWY~~  126 (264)
T TIGR03709        54 RRSLLLVLQ-----AMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAE--ELDHDFLWRIHKALPERGEIGIFNRSHYED  126 (264)
T ss_pred             CCcEEEEEE-----CCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHH--HHcCchHHHHHHhCCCCCeEEEEcCccccc
Confidence            458888999     9999999999999999884   333333211000  001111111111111 1110  11122222


Q ss_pred             HHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCC
Q 025529          104 IIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKV  183 (251)
Q Consensus       104 ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~  183 (251)
                      .+.+++.....     -..+.....+...|+..+...|... +-++|.+|.++..+|+..|..++.+.            
T Consensus       127 vl~~rv~g~~~-----~~~~~~~~~~I~~FEr~L~~~G~~I-iKffLhIsk~eQ~kRl~~r~~~p~k~------------  188 (264)
T TIGR03709       127 VLVVRVHGLIP-----KAIWERRYEDINDFERYLTENGTTI-LKFFLHISKEEQKKRFLARLDDPTKN------------  188 (264)
T ss_pred             hhhhhhcCCCC-----HHHHHHHHHHHHHHHHHHHHCCcEE-EEEEEeCCHHHHHHHHHHHhcCCccc------------
Confidence            22222211100     0001122334455666666666643 67889999999999999886433211            


Q ss_pred             CCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhh-CCcEEEEcCCCChhH---HHHHHHHHh
Q 025529          184 PGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQE---VTSEVQKAL  249 (251)
Q Consensus       184 ~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~~ee---v~~~i~~~l  249 (251)
                                  ++-....-...+++..|...+..++..-.. ...|+.|+++..--.   |.+.|.+.|
T Consensus       189 ------------Wk~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l  246 (264)
T TIGR03709       189 ------------WKFSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDAL  246 (264)
T ss_pred             ------------ccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHH
Confidence                        112222334445677777777766665432 347999999744332   334444444

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.67  E-value=2.7e-05  Score=66.04  Aligned_cols=32  Identities=16%  Similarity=0.340  Sum_probs=28.3

Q ss_pred             ecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM   71 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~l   71 (251)
                      |+|+||+|||||+++..|++.++..+|++|.+
T Consensus         2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~   33 (287)
T TIGR00174         2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM   33 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence            45559999999999999999999999999863

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=97.66  E-value=0.0055  Score=55.80  Aligned_cols=172  Identities=12%  Similarity=0.085  Sum_probs=90.5

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCchHHHHHHHHHcCCC---cCHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL---VSDDLVV  102 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~  102 (251)
                      .+.+..|+|.     |..||||+++.+.|.+.++   +.+.+...--..  +...++-..+-..+-..+.   ....+..
T Consensus        37 ~~~~vlIv~e-----G~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~e--E~~~~flwRfw~~lP~~G~I~IFdRSWY~  109 (493)
T TIGR03708        37 AGFPVIILIE-----GWDGAGKGETINLLNEWMDPRGIETHAFGRPSDE--ERERPPMWRFWRRLPPKGKIGIFFGSWYT  109 (493)
T ss_pred             cCCeEEEEEe-----CCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHH--HhcCcHHHHHHHhCCCCCeEEEEcCcccc
Confidence            5678889999     9999999999999999884   443333210000  0111222222222211111   1112223


Q ss_pred             HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCC
Q 025529          103 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPK  182 (251)
Q Consensus       103 ~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~  182 (251)
                      +.+.+++.....     -+.+.....+...|+..+...|... +-++|.+|.++..+|+..|..++...           
T Consensus       110 ~vlverv~g~~~-----~~~~~~~~~~I~~FE~~L~~~G~~I-lKffLhIsk~EQ~kRl~~r~~~P~k~-----------  172 (493)
T TIGR03708       110 RPLIERLEGRID-----EAKLDSHIEDINRFERMLADDGALI-LKFWLHLSKKQQKERLKKLEKDPETR-----------  172 (493)
T ss_pred             hhhHHHhcCCCC-----HHHHHHHHHHHHHHHHHHHHCCCEE-EEEEEECCHHHHHHHHHHHhcCCccc-----------
Confidence            333232211100     0001112334445666666666643 67899999999999999986443211           


Q ss_pred             CCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhh-CCcEEEEcCCCC
Q 025529          183 VPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKP  237 (251)
Q Consensus       183 ~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~  237 (251)
                                   +.-....-.-+++...|......++..-.. ...|+.|+++..
T Consensus       173 -------------WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK  215 (493)
T TIGR03708       173 -------------WRVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDD  215 (493)
T ss_pred             -------------cCCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence                         111212223334567777766666554432 346999999743

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.65  E-value=0.00043  Score=58.17  Aligned_cols=27  Identities=33%  Similarity=0.557  Sum_probs=23.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .....++|.     ||||+||||+|+.+++.+
T Consensus        40 ~~~~~vll~-----GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        40 KQVLHMIFK-----GNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CCcceEEEE-----cCCCCCHHHHHHHHHHHH
Confidence            345678899     999999999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.64  E-value=0.00014  Score=54.61  Aligned_cols=41  Identities=15%  Similarity=0.110  Sum_probs=31.1

Q ss_pred             HHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           19 TELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        19 ~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      .++.......-.++..+++.     |+.||||||+++.+++.+|..
T Consensus         9 ~~l~~~l~~~l~~~~~i~l~-----G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150         9 DKFGKAFAKPLDFGTVVLLK-----GDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             HHHHHHHHHhCCCCCEEEEE-----cCCCCCHHHHHHHHHHHcCCC
Confidence            33444444333466788899     999999999999999999864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.64  E-value=5.7e-05  Score=64.82  Aligned_cols=35  Identities=20%  Similarity=0.326  Sum_probs=30.7

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM   71 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l   71 (251)
                      ++.|++.     ||+||||||+|..|+++++..+|+.|.+
T Consensus         4 ~~~i~i~-----GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          4 PKVIVIV-----GPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             ceEEEEE-----CCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            4567777     9999999999999999999999988873

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.58  E-value=0.00011  Score=59.75  Aligned_cols=32  Identities=34%  Similarity=0.532  Sum_probs=24.9

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      -.-++|+     ||||+||||+|+.+|+.++..+..+
T Consensus        50 l~h~lf~-----GPPG~GKTTLA~IIA~e~~~~~~~~   81 (233)
T PF05496_consen   50 LDHMLFY-----GPPGLGKTTLARIIANELGVNFKIT   81 (233)
T ss_dssp             --EEEEE-----SSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred             cceEEEE-----CCCccchhHHHHHHHhccCCCeEec
Confidence            3468899     9999999999999999998766443

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.57  E-value=5e-05  Score=59.05  Aligned_cols=36  Identities=19%  Similarity=0.350  Sum_probs=23.8

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA   77 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~   77 (251)
                      +|+|.     |++|+||||+++.|++. |++++  .+..+..+.
T Consensus         1 rI~i~-----G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~   36 (163)
T PF13521_consen    1 RIVIT-----GGPSTGKTTLIEALAAR-GYPVV--PEYAREIIE   36 (163)
T ss_dssp             -EEEE-------TTSHHHHHHHHHHHH-T-EEE----TTHHHHH
T ss_pred             CEEEE-----CCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHH
Confidence            46677     99999999999999998 88876  444444433

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00018  Score=61.08  Aligned_cols=28  Identities=25%  Similarity=0.592  Sum_probs=23.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      ....|++.     ||||+|||++|+.||.++-+
T Consensus       176 ~NRliLlh-----GPPGTGKTSLCKaLaQkLSI  203 (423)
T KOG0744|consen  176 WNRLILLH-----GPPGTGKTSLCKALAQKLSI  203 (423)
T ss_pred             eeeEEEEe-----CCCCCChhHHHHHHHHhhee
Confidence            34557777     99999999999999999843

>PRK06761 hypothetical protein; Provisional

Probab=97.56  E-value=4.5e-05  Score=64.46  Aligned_cols=26  Identities=35%  Similarity=0.557  Sum_probs=22.6

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      +.|++.     |+|||||||+++.|++++..
T Consensus         4 ~lIvI~-----G~~GsGKTTla~~L~~~L~~   29 (282)
T PRK06761          4 KLIIIE-----GLPGFGKSTTAKMLNDILSQ   29 (282)
T ss_pred             cEEEEE-----CCCCCCHHHHHHHHHHhcCc
Confidence            456677     99999999999999999864

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.55  E-value=2.9e-05  Score=64.78  Aligned_cols=35  Identities=14%  Similarity=0.311  Sum_probs=28.3

Q ss_pred             eecccCCCCCChhHHHHHHHHHhC-----CceechhHHHH
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLR   73 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~   73 (251)
                      ||+|+|++||||||+++.|++.++     ..+++.|++.+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            578889999999999999998873     45677776544

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.55  E-value=7.7e-05  Score=66.05  Aligned_cols=35  Identities=20%  Similarity=0.313  Sum_probs=31.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD   70 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~   70 (251)
                      .|..|+++     ||||+|||++++.|++.++.+++.++.
T Consensus        46 ~p~~ILLi-----GppG~GKT~lAraLA~~l~~~fi~vda   80 (441)
T TIGR00390        46 TPKNILMI-----GPTGVGKTEIARRLAKLANAPFIKVEA   80 (441)
T ss_pred             CCceEEEE-----CCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence            45789999     999999999999999999998888863

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.00083  Score=56.67  Aligned_cols=44  Identities=20%  Similarity=0.441  Sum_probs=34.5

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCcee--chhHHHHHHHHcCCc
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRAAVAAKTP   81 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i--~~~~li~~~~~~~~~   81 (251)
                      .-|+++     ||||+|||.+|+..|-+-+-.++  +.++|+.+++.....
T Consensus       167 rgiLLy-----GPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEk  212 (439)
T KOG0739|consen  167 RGILLY-----GPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK  212 (439)
T ss_pred             eeEEEe-----CCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHH
Confidence            348888     99999999999999998886555  456888887665433

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.53  E-value=0.00013  Score=61.35  Aligned_cols=47  Identities=19%  Similarity=0.140  Sum_probs=33.8

Q ss_pred             HHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           17 LMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .++++.+.....-..+..+++.     |+||+|||++|+.|++.+|.+++..
T Consensus         6 ~~~~l~~~~l~~l~~g~~vLL~-----G~~GtGKT~lA~~la~~lg~~~~~i   52 (262)
T TIGR02640         6 AVKRVTSRALRYLKSGYPVHLR-----GPAGTGKTTLAMHVARKRDRPVMLI   52 (262)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEE-----cCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            4444555554332334468889     9999999999999999998876633

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>CHL00181 cbbX CbbX; Provisional

Probab=97.52  E-value=0.00051  Score=58.55  Aligned_cols=26  Identities=31%  Similarity=0.537  Sum_probs=23.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..++|.     ||||+||||+|+.+++.+
T Consensus        58 ~~~~ill~-----G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         58 PGLHMSFT-----GSPGTGKTTVALKMADIL   83 (287)
T ss_pred             CCceEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            46668999     999999999999998876

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00087  Score=61.47  Aligned_cols=35  Identities=31%  Similarity=0.600  Sum_probs=31.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      .+|.-+++.     ||||+|||.+|+.+|.+++++++++.
T Consensus       221 ~PprGvLlH-----GPPGCGKT~lA~AiAgel~vPf~~is  255 (802)
T KOG0733|consen  221 RPPRGVLLH-----GPPGCGKTSLANAIAGELGVPFLSIS  255 (802)
T ss_pred             CCCCceeee-----CCCCccHHHHHHHHhhhcCCceEeec
Confidence            455668889     99999999999999999999998874

>PHA03134 thymidine kinase; Provisional

Probab=97.49  E-value=0.0084  Score=51.67  Aligned_cols=21  Identities=10%  Similarity=0.120  Sum_probs=19.6

Q ss_pred             CEEEEEecCHHHHHHHHhcCc
Q 025529          145 DKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       145 ~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      +.+|+++++.++..+|+.+|.
T Consensus       165 ~niVl~~l~~~e~~~Rl~~R~  185 (340)
T PHA03134        165 GNLVVTTLNPDEHLRRLRARA  185 (340)
T ss_pred             CeEEEEeCCHHHHHHHHHHcC
Confidence            789999999999999999884

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.48  E-value=0.00012  Score=56.21  Aligned_cols=39  Identities=21%  Similarity=0.316  Sum_probs=28.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA   74 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~   74 (251)
                      -+|+|++.     |+||+||||+++.+++.+.-.-+.++-++..
T Consensus         4 ~~mki~IT-----G~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~   42 (179)
T COG1618           4 MAMKIFIT-----GRPGVGKTTLVLKIAEKLREKGYKVGGFITP   42 (179)
T ss_pred             cceEEEEe-----CCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence            46788888     9999999999999999884433344433333

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.48  E-value=0.00011  Score=65.07  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=30.8

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD   70 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~   70 (251)
                      +..|+|+     ||||+||||+|+.|++.++.+++.++.
T Consensus        50 ~~~ILli-----Gp~G~GKT~LAr~LAk~l~~~fi~vD~   83 (443)
T PRK05201         50 PKNILMI-----GPTGVGKTEIARRLAKLANAPFIKVEA   83 (443)
T ss_pred             CceEEEE-----CCCCCCHHHHHHHHHHHhCChheeecc
Confidence            6789999     999999999999999999988887763

>PLN02840 tRNA dimethylallyltransferase

Probab=97.47  E-value=0.00012  Score=65.06  Aligned_cols=36  Identities=19%  Similarity=0.343  Sum_probs=30.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD   70 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~   70 (251)
                      .+++.|+|.     ||+||||||++..|+++++..+|+.|.
T Consensus        19 ~~~~vi~I~-----GptgsGKTtla~~La~~~~~~iis~Ds   54 (421)
T PLN02840         19 KKEKVIVIS-----GPTGAGKSRLALELAKRLNGEIISADS   54 (421)
T ss_pred             cCCeEEEEE-----CCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence            345567777     999999999999999999988888865

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.45  E-value=0.00012  Score=54.17  Aligned_cols=28  Identities=32%  Similarity=0.580  Sum_probs=23.5

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      +..+++.     |||||||||+++.|+..+...
T Consensus         2 ~~~~~l~-----G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIV-----GPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEE-----CCCCCcHHHHHHHHHhccCCC
Confidence            3457777     999999999999999998653

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK12377 putative replication protein; Provisional

Probab=97.45  E-value=0.006  Score=50.81  Aligned_cols=105  Identities=13%  Similarity=0.269  Sum_probs=58.6

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh---C--CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID  106 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~  106 (251)
                      ...++|.     |+||+|||+++..++..+   |  +.++++.+++...           +.....+.     ....+  
T Consensus       101 ~~~l~l~-----G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l-----------~~~~~~~~-----~~~~~--  157 (248)
T PRK12377        101 CTNFVFS-----GKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL-----------HESYDNGQ-----SGEKF--  157 (248)
T ss_pred             CCeEEEE-----CCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH-----------HHHHhccc-----hHHHH--
Confidence            3568889     999999999999999887   3  3456666665432           22221111     01111  


Q ss_pred             HHHcCCCCCCceEEeCC---CCCHHHHHHHHHHHHhc-C-CCcCEEEEEecCHHHHHHHHh
Q 025529          107 EAMKKPSCQKGFILDGF---PRTEVQAQKLDEMLEKQ-G-KKVDKVLNFAIDDAVLEERIT  162 (251)
Q Consensus       107 ~~l~~~~~~~~~Iidg~---~~~~~~~~~l~~~~~~~-~-~~~~~vI~L~~~~e~~~~Rl~  162 (251)
                        +.......-+|||.+   ..+..+...|..++... . ..| .+|--..+.+++.+++.
T Consensus       158 --l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~p-tiitSNl~~~~l~~~~~  215 (248)
T PRK12377        158 --LQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRS-VGMLTNLNHEAMSTLLG  215 (248)
T ss_pred             --HHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCC-EEEEcCCCHHHHHHHhh
Confidence              122223346788877   33444555666666432 1 223 45545566666555444

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.44  E-value=0.00049  Score=60.11  Aligned_cols=35  Identities=31%  Similarity=0.415  Sum_probs=29.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ..-...+|+     ||||+||||+|+.|+...+..+...+
T Consensus        46 ~~l~SmIl~-----GPPG~GKTTlA~liA~~~~~~f~~~s   80 (436)
T COG2256          46 GHLHSMILW-----GPPGTGKTTLARLIAGTTNAAFEALS   80 (436)
T ss_pred             CCCceeEEE-----CCCCCCHHHHHHHHHHhhCCceEEec
Confidence            345568899     99999999999999999987776554

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.43  E-value=0.00018  Score=62.56  Aligned_cols=42  Identities=24%  Similarity=0.377  Sum_probs=29.9

Q ss_pred             HHHHHHHHhhcc----CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           17 LMTELLRRMKCA----SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        17 ~~~~~~~~~~~~----~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      ...+++.+....    ..+...+.|.     |||||||||+++.|++.++.
T Consensus        59 ~i~~lv~~l~~~a~g~~~~r~il~L~-----GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       59 AIERFVNYFKSAAQGLEERKQILYLL-----GPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEE-----CCCCCCHHHHHHHHHHHHhh
Confidence            455566555432    1234556777     99999999999999999964

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=97.43  E-value=0.0041  Score=47.61  Aligned_cols=126  Identities=14%  Similarity=0.074  Sum_probs=68.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC--CceechhHHHHHHHHcCCchHHH--HHH-HHHcCCC----cCHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKTPLGIK--AKE-AMDKGEL----VSDDLV  101 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~~~li~~~~~~~~~~~~~--i~~-~l~~~~~----~~~~~~  101 (251)
                      ++..+++=     |.+.||||++|..|++-+.  +-++.+|.++....+..-..+..  ... ....+..    .+..+.
T Consensus        22 ~griVlLN-----G~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~   96 (205)
T COG3896          22 EGRIVLLN-----GGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPIL   96 (205)
T ss_pred             CceEEEec-----CCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHH
Confidence            45555556     9999999999999999885  45666665554433322111111  000 0000100    111111


Q ss_pred             ---HHHHHHHHcC-CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          102 ---VGIIDEAMKK-PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       102 ---~~ll~~~l~~-~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                         ..-....+.. .+++..+|.|.+.-+.........++.   .-+..+|-+.||.|+..+|-..|
T Consensus        97 e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~---g~~v~~VGV~~p~E~~~~Re~rr  160 (205)
T COG3896          97 ELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLE---GCRVWMVGVHVPDEEGARRELRR  160 (205)
T ss_pred             HHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHh---CCceEEEEeeccHHHHHHHHhhc
Confidence               1111222222 234456888888777555444444443   22347889999999999996655

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.001  Score=57.31  Aligned_cols=121  Identities=18%  Similarity=0.253  Sum_probs=70.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee--chhHHHHHHHHcCCchHHHHHHHHHcC--------------
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRAAVAAKTPLGIKAKEAMDKG--------------   93 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i--~~~~li~~~~~~~~~~~~~i~~~l~~~--------------   93 (251)
                      .+|.-+++.     ||||+|||-+|++.|.+.+..||  ..++++++.+..+..+-+.+=.+-...              
T Consensus       183 ~PPKGVLLY-----GPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg  257 (406)
T COG1222         183 DPPKGVLLY-----GPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIG  257 (406)
T ss_pred             CCCCceEee-----CCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhh
Confidence            455568888     99999999999999999987766  446888888776654433222111111              


Q ss_pred             ------CCcCHHHHHHHHHHHHcCCC---CCC--ceEE-eCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025529           94 ------ELVSDDLVVGIIDEAMKKPS---CQK--GFIL-DGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI  161 (251)
Q Consensus        94 ------~~~~~~~~~~ll~~~l~~~~---~~~--~~Ii-dg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl  161 (251)
                            ..-.+..+.+.+.+.+++++   ...  .+|. .+.|-....+.     +  ....+|..|.+-.|.+.....+
T Consensus       258 ~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPAL-----L--RPGR~DRkIEfplPd~~gR~~I  330 (406)
T COG1222         258 AKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPAL-----L--RPGRFDRKIEFPLPDEEGRAEI  330 (406)
T ss_pred             cccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhh-----c--CCCcccceeecCCCCHHHHHHH
Confidence                  11224455555555555443   221  1222 23333222221     1  2356788888888887666655


Q ss_pred             h
Q 025529          162 T  162 (251)
Q Consensus       162 ~  162 (251)
                      .
T Consensus       331 l  331 (406)
T COG1222         331 L  331 (406)
T ss_pred             H
Confidence            4

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.36  E-value=0.00011  Score=52.98  Aligned_cols=22  Identities=36%  Similarity=0.894  Sum_probs=19.4

Q ss_pred             ecccCCCCCChhHHHHHHHHHh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~   61 (251)
                      |+|.|+||+|||++++.|++.+
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l   22 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDL   22 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            4677999999999999998875

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.36  E-value=0.00011  Score=55.65  Aligned_cols=23  Identities=35%  Similarity=0.590  Sum_probs=19.5

Q ss_pred             ecccCCCCCChhHHHHHHHHHhC
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~   62 (251)
                      |+|.||+||||||+++.|++.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCC
Confidence            34449999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=97.33  E-value=0.00054  Score=51.96  Aligned_cols=21  Identities=33%  Similarity=0.686  Sum_probs=18.5

Q ss_pred             cccCCCCCChhHHHHHHHHHh
Q 025529           41 WLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~~~   61 (251)
                      ||+|-+||||||+|-.|.+.+
T Consensus        35 WiTGLSgSGKStlACaL~q~L   55 (207)
T KOG0635|consen   35 WITGLSGSGKSTLACALSQAL   55 (207)
T ss_pred             EEeccCCCCchhHHHHHHHHH
Confidence            444999999999999998887

>PRK06526 transposase; Provisional

Probab=97.32  E-value=0.0035  Score=52.46  Aligned_cols=39  Identities=15%  Similarity=0.279  Sum_probs=28.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh---CC--ceechhHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CL--CHLATGDMLRA   74 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~--~~i~~~~li~~   74 (251)
                      .+..+++.     ||||+|||+++..|+...   |.  .+++..+++..
T Consensus        97 ~~~nlll~-----Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~  140 (254)
T PRK06526         97 GKENVVFL-----GPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR  140 (254)
T ss_pred             cCceEEEE-----eCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence            46679999     999999999999997765   33  33444455443

>PHA03135 thymidine kinase; Provisional

Probab=97.31  E-value=0.017  Score=49.85  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=19.3

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+|-|.     |+.|+||||+++.|++.
T Consensus        11 ~rIYlD-----G~~GvGKTT~~~~l~~~   33 (343)
T PHA03135         11 IRVYLD-----GPFGIGKTSMLNEMPDH   33 (343)
T ss_pred             EEEEEE-----CCCCCCHHHHHHHHHHh
Confidence            345555     99999999999999985

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.31  E-value=0.00016  Score=56.65  Aligned_cols=21  Identities=38%  Similarity=0.738  Sum_probs=17.8

Q ss_pred             cccCCCCCChhHHHHHHHHHh
Q 025529           41 WLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~~~   61 (251)
                      +|+|+||+||||+.+.+.+.+
T Consensus         3 ~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    3 FITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEES-TTSSHHHHHHHHHHHH
T ss_pred             EEECcCCCCHHHHHHHHHHHh
Confidence            445999999999999999988

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.31  E-value=0.0038  Score=55.32  Aligned_cols=26  Identities=35%  Similarity=0.621  Sum_probs=22.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +|..++++     ||.|+||||++..||..|
T Consensus       173 ~~~vi~lv-----GptGvGKTTT~aKLA~~~  198 (388)
T PRK12723        173 KKRVFILV-----GPTGVGKTTTIAKLAAIY  198 (388)
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            45678888     999999999999999876

>PLN02748 tRNA dimethylallyltransferase

Probab=97.29  E-value=0.00026  Score=63.95  Aligned_cols=36  Identities=19%  Similarity=0.384  Sum_probs=32.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD   70 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~   70 (251)
                      .++..|+|+     ||+|||||+++..|++.++..+|+.|.
T Consensus        20 ~~~~~i~i~-----GptgsGKs~la~~la~~~~~eii~~Ds   55 (468)
T PLN02748         20 GKAKVVVVM-----GPTGSGKSKLAVDLASHFPVEIINADS   55 (468)
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence            455678888     999999999999999999999999985

>PF05729 NACHT: NACHT domain

Probab=97.27  E-value=0.00018  Score=55.37  Aligned_cols=22  Identities=36%  Similarity=0.809  Sum_probs=19.4

Q ss_pred             ecccCCCCCChhHHHHHHHHHh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++|+|+||+||||+++.++..+
T Consensus         3 l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            4556999999999999999887

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=97.25  E-value=0.0016  Score=52.68  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=19.3

Q ss_pred             ecccCCCCCChhHHHHHHHHHh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~   61 (251)
                      |+|+|-|.|||||.|..|.+.+
T Consensus         4 Vvi~G~P~SGKstrA~~L~~~l   25 (281)
T KOG3062|consen    4 VVICGLPCSGKSTRAVELREAL   25 (281)
T ss_pred             EEEeCCCCCCchhHHHHHHHHH
Confidence            4556999999999999999887

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.24  E-value=0.00033  Score=60.29  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=28.0

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      +..+++.     |+||+||||+++.|++.++.+++.+
T Consensus        64 ~~~ilL~-----G~pGtGKTtla~~lA~~l~~~~~rV   95 (327)
T TIGR01650        64 DRRVMVQ-----GYHGTGKSTHIEQIAARLNWPCVRV   95 (327)
T ss_pred             CCcEEEE-----eCCCChHHHHHHHHHHHHCCCeEEE
Confidence            3459999     9999999999999999999887644

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.23  E-value=0.00073  Score=50.09  Aligned_cols=25  Identities=36%  Similarity=0.647  Sum_probs=19.0

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ...+++.     |++|+|||++++.+++.+
T Consensus         4 ~~~~~i~-----G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    4 QRILVIS-----GPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ---EEEE-----E-TTSSHHHHHHHHHHHH
T ss_pred             CcccEEE-----cCCCCCHHHHHHHHHHHh
Confidence            3456666     999999999999999987

>PLN02796 D-glycerate 3-kinase

Probab=97.23  E-value=0.00017  Score=62.40  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=26.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDM   71 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~l   71 (251)
                      +|..+.|.     |++||||||+++.|+..+.     ...++.|++
T Consensus        99 ~pliIGI~-----G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf  139 (347)
T PLN02796         99 PPLVIGIS-----APQGCGKTTLVFALVYLFNATGRRAASLSIDDF  139 (347)
T ss_pred             CCEEEEEE-----CCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence            45555666     9999999999999998884     344566544

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.22  E-value=0.00032  Score=52.88  Aligned_cols=24  Identities=29%  Similarity=0.407  Sum_probs=21.5

Q ss_pred             CCCCCChhHHHHHHHHHhCCceec
Q 025529           44 GPPGSGKGTQSPIIKDEYCLCHLA   67 (251)
Q Consensus        44 G~~gsGKST~a~~La~~~~~~~i~   67 (251)
                      |+||+|||++++.+++.++.+++.
T Consensus         6 G~~G~GKt~l~~~la~~~~~~~~~   29 (139)
T PF07728_consen    6 GPPGTGKTTLARELAALLGRPVIR   29 (139)
T ss_dssp             ESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCHHHHHHHHHHHhhcceEE
Confidence            999999999999999999876543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.22  E-value=0.00017  Score=59.81  Aligned_cols=20  Identities=35%  Similarity=0.408  Sum_probs=18.4

Q ss_pred             cCCCCCChhHHHHHHHHHhC
Q 025529           43 AGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        43 ~G~~gsGKST~a~~La~~~~   62 (251)
                      .||+||||||+++.+++.+.
T Consensus         2 iGpaGSGKTT~~~~~~~~~~   21 (238)
T PF03029_consen    2 IGPAGSGKTTFCKGLSEWLE   21 (238)
T ss_dssp             EESTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHH
Confidence            49999999999999999884

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.19  E-value=0.00099  Score=49.22  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=29.7

Q ss_pred             HHHHHhhc--cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           20 ELLRRMKC--ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        20 ~~~~~~~~--~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +++..+..  .|.+|..+.|-     |++|+|||.+++.||+.+
T Consensus        39 ~ai~~~l~~~~p~KpLVlSfH-----G~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   39 NAIKGHLANPNPRKPLVLSFH-----GWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             HHHHHHHcCCCCCCCEEEEee-----cCCCCcHHHHHHHHHHHH
Confidence            34444433  46789899999     999999999999999984

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.14  E-value=0.00045  Score=63.01  Aligned_cols=34  Identities=26%  Similarity=0.461  Sum_probs=29.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      .|.-+++.     ||||+|||.+|+.++..++.+++.++
T Consensus       258 ~pkGILL~-----GPpGTGKTllAkaiA~e~~~~~~~l~  291 (489)
T CHL00195        258 TPRGLLLV-----GIQGTGKSLTAKAIANDWQLPLLRLD  291 (489)
T ss_pred             CCceEEEE-----CCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence            45668999     99999999999999999998877653

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.14  E-value=0.00046  Score=61.47  Aligned_cols=31  Identities=16%  Similarity=0.202  Sum_probs=26.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL   66 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i   66 (251)
                      -..+|+|+     |++||||||+++.|++.||...+
T Consensus       218 ~~~~IvI~-----G~~gsGKTTL~~~La~~~g~~~v  248 (399)
T PRK08099        218 FVRTVAIL-----GGESSGKSTLVNKLANIFNTTSA  248 (399)
T ss_pred             CCcEEEEE-----cCCCCCHHHHHHHHHHHhCCCee
Confidence            35568888     99999999999999999987754

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.13  E-value=0.00073  Score=50.37  Aligned_cols=32  Identities=41%  Similarity=0.577  Sum_probs=25.7

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceech
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLAT   68 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~   68 (251)
                      +..+++.     |+||+||||+++.+++.+   +..++..
T Consensus        19 ~~~v~i~-----G~~G~GKT~l~~~i~~~~~~~~~~v~~~   53 (151)
T cd00009          19 PKNLLLY-----GPPGTGKTTLARAIANELFRPGAPFLYL   53 (151)
T ss_pred             CCeEEEE-----CCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence            4468888     999999999999999987   5554444

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.13  E-value=0.0005  Score=61.44  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=29.2

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ...++|.     ||||+|||++|+.|++.++.+++.++
T Consensus       108 ~~~iLl~-----Gp~GtGKT~lAr~lA~~l~~pf~~id  140 (412)
T PRK05342        108 KSNILLI-----GPTGSGKTLLAQTLARILDVPFAIAD  140 (412)
T ss_pred             CceEEEE-----cCCCCCHHHHHHHHHHHhCCCceecc
Confidence            4568999     99999999999999999998887665

>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type

Probab=97.12  E-value=0.0069  Score=47.37  Aligned_cols=114  Identities=14%  Similarity=0.131  Sum_probs=66.7

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCc---eechhHHHHHHHHcC-----------CchHH----HHHHHHHcCCCcCHHH
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLC---HLATGDMLRAAVAAK-----------TPLGI----KAKEAMDKGELVSDDL  100 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~---~i~~~~li~~~~~~~-----------~~~~~----~i~~~l~~~~~~~~~~  100 (251)
                      ||+|+|..+|||-|++..|.++++..   ++..++-+.......           .++..    .+.++.+......++.
T Consensus         1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~   80 (182)
T TIGR01223         1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGF   80 (182)
T ss_pred             CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccH
Confidence            46777999999999999999998742   466655554444321           11111    1111111111112234


Q ss_pred             HHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025529          101 VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI  161 (251)
Q Consensus       101 ~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl  161 (251)
                      +.+.+...+.    ..-|||++. +...+...|.+.+   + ..-..|.+.+++++..+|.
T Consensus        81 F~r~~~~~~~----~~v~iIsD~-Rr~~dv~~f~~~~---g-~~~~~VRV~AseetR~~Rg  132 (182)
T TIGR01223        81 FCRKIVEGIS----QPIWLVSDT-RRVSDIQWFREAY---G-AVTQTVRVVALEQSRQQRG  132 (182)
T ss_pred             HHHHHHhccC----CCEEEEeCC-CcccHHHHHHHHc---C-CceEEEEEecCHHHHHHHH
Confidence            4444333221    235677764 6677777776653   2 2347889999999999996

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.12  E-value=0.0007  Score=50.03  Aligned_cols=30  Identities=27%  Similarity=0.339  Sum_probs=24.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      +++..|++.     |+-||||||+++.+++.+|..
T Consensus        13 ~~g~vi~L~-----GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen   13 KPGDVILLS-----GDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             SS-EEEEEE-----ESTTSSHHHHHHHHHHHTT--
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHHHHcCCC
Confidence            466778888     999999999999999999764

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.09  E-value=0.0005  Score=61.17  Aligned_cols=34  Identities=29%  Similarity=0.559  Sum_probs=28.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .+|..+++.     ||||+|||++|+.++..++.+++.+
T Consensus       163 ~~p~gvLL~-----GppGtGKT~lAkaia~~~~~~~i~v  196 (389)
T PRK03992        163 EPPKGVLLY-----GPPGTGKTLLAKAVAHETNATFIRV  196 (389)
T ss_pred             CCCCceEEE-----CCCCCChHHHHHHHHHHhCCCEEEe
Confidence            356678999     9999999999999999998766544

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.08  E-value=0.00057  Score=59.63  Aligned_cols=38  Identities=21%  Similarity=0.270  Sum_probs=30.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech--hHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT--GDML   72 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~--~~li   72 (251)
                      +.|..+.|.     ||||+|||.+|+.+++++|..++.+  .++.
T Consensus       146 k~PlgllL~-----GPPGcGKTllAraiA~elg~~~i~vsa~eL~  185 (413)
T PLN00020        146 KVPLILGIW-----GGKGQGKSFQCELVFKKMGIEPIVMSAGELE  185 (413)
T ss_pred             CCCeEEEee-----CCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh
Confidence            456666777     9999999999999999999876654  4444

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=97.08  E-value=0.00031  Score=62.16  Aligned_cols=23  Identities=30%  Similarity=0.696  Sum_probs=21.3

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -|++-     |+||+||||+|+.||+.|
T Consensus       265 GILIA-----G~PGaGKsTFaqAlAefy  287 (604)
T COG1855         265 GILIA-----GAPGAGKSTFAQALAEFY  287 (604)
T ss_pred             ceEEe-----cCCCCChhHHHHHHHHHH
Confidence            38888     999999999999999988

>PRK10646 ADP-binding protein; Provisional

Probab=97.07  E-value=0.0016  Score=50.01  Aligned_cols=45  Identities=22%  Similarity=0.117  Sum_probs=32.9

Q ss_pred             hhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           15 VDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      .+-..++...+...-+++..+++.     |.-||||||+++.|++.+|+.
T Consensus        11 ~~~t~~l~~~la~~l~~g~vi~L~-----GdLGaGKTtf~rgl~~~Lg~~   55 (153)
T PRK10646         11 EQATLDLGARVAKACDGATVIYLY-----GDLGAGKTTFSRGFLQALGHQ   55 (153)
T ss_pred             HHHHHHHHHHHHHhCCCCcEEEEE-----CCCCCCHHHHHHHHHHHcCCC
Confidence            333444555554333456678888     999999999999999999864

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=97.07  E-value=0.0056  Score=50.28  Aligned_cols=169  Identities=13%  Similarity=0.132  Sum_probs=80.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCch-HHHHHHHHHcCCC--cCHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPL-GIKAKEAMDKGEL--VSDDLVVG  103 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~-~~~i~~~l~~~~~--~~~~~~~~  103 (251)
                      +.|..|+|.     |..||||+.+.+.|.+.++   +.+.+...--..  +...++ ....+..-..|..  ....+...
T Consensus        29 ~~~vlIl~e-----G~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~e--E~~~p~lwRfw~~lP~~G~I~if~rSWY~~  101 (228)
T PF03976_consen   29 GIPVLILFE-----GWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDE--ELRRPFLWRFWRALPARGQIGIFDRSWYED  101 (228)
T ss_dssp             HHEEEEEEE-----ESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HH--HHTS-TTHHHHTTS--TT-EEEEES-GGGG
T ss_pred             CCcEEEEEe-----ccccCCchHHHHHHHHhCCCCeeEEEeCCCCChh--HcCCCcHHHHHHhCCCCCEEEEEecchhhH
Confidence            345778888     9999999999999999884   333333211111  111111 1111111111100  00111122


Q ss_pred             HHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCC
Q 025529          104 IIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKV  183 (251)
Q Consensus       104 ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~  183 (251)
                      .+..++......     ..+.....+...|+..+...|... +-|+|.+|.++..+|+..+..++.+             
T Consensus       102 ~l~~rv~~~~~~-----~~~~~~~~~I~~FEr~L~~~G~~I-iKfflhIsk~eQ~kRl~~~~~~p~~-------------  162 (228)
T PF03976_consen  102 VLVERVEGFIDE-----AEWERRLEEINRFERMLADDGTLI-IKFFLHISKKEQKKRLKEREEDPLK-------------  162 (228)
T ss_dssp             GTHHHHTTSSTH-----HHHHHHHHHHHHHHHHHHHTTEEE-EEEEEE--HHHHHHHHHHHHHSCCC-------------
T ss_pred             HHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHCCCeE-EEEEEEeCHHHHHHHHHHHhcCccc-------------
Confidence            222222111000     001122344455666666666543 6789999999999999988643211             


Q ss_pred             CCCCCCCCCCcccCCCCcHHH--HHHHHHHHHhccHHHHHHHhh-CCcEEEEcCCCC
Q 025529          184 PGVDDVTGEPLIQRKDDTAAV--LKSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKP  237 (251)
Q Consensus       184 ~~~~~~~~~~~~~r~~~~~~~--~~~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~  237 (251)
                                   +-..++..  -.+++..|...+..++..-+. ...|+.|+++..
T Consensus       163 -------------~wkv~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~dk  206 (228)
T PF03976_consen  163 -------------RWKVSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADDK  206 (228)
T ss_dssp             -------------GGG--HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SSH
T ss_pred             -------------cccCCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCCH
Confidence                         11222232  234567777766666654332 346999999743

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.05  E-value=0.0003  Score=62.26  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=26.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDM   71 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~l   71 (251)
                      +|..|.|.     |+.||||||+++.|...+.     ...|+.|++
T Consensus       211 ~PlIIGIs-----G~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf  251 (460)
T PLN03046        211 PPLVIGFS-----APQGCGKTTLVFALDYLFRVTGRKSATLSIDDF  251 (460)
T ss_pred             CCEEEEEE-----CCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence            45555555     9999999999999987662     445666654

>PF13245 AAA_19: Part of AAA domain

Probab=97.04  E-value=0.00081  Score=45.38  Aligned_cols=25  Identities=32%  Similarity=0.596  Sum_probs=17.0

Q ss_pred             CeEEEEEeecccCCCCCChh-HHHHHHHHHh
Q 025529           32 DKRLILIIVWLAGPPGSGKG-TQSPIIKDEY   61 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKS-T~a~~La~~~   61 (251)
                      +...++.     |||||||| |+++.++..+
T Consensus        10 ~~~~vv~-----g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   10 SPLFVVQ-----GPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             CCeEEEE-----CCCCCCHHHHHHHHHHHHH
Confidence            4456668     99999999 4555544443

>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2

Probab=97.04  E-value=0.00048  Score=52.66  Aligned_cols=25  Identities=24%  Similarity=0.159  Sum_probs=19.7

Q ss_pred             CCC-cCEEEEEecCHHHHHHHHhcCc
Q 025529          141 GKK-VDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       141 ~~~-~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ... ||++|||++|++++++|+.+|+
T Consensus        64 ~~~~pdl~IYL~~~~e~~~~RI~kRg   89 (146)
T PF01712_consen   64 IPKSPDLIIYLDASPETCLERIKKRG   89 (146)
T ss_dssp             CCHH-SEEEEEE--HHHHHHHHHHCT
T ss_pred             hhccCCeEEEEeCCHHHHHHHHHHhC
Confidence            355 9999999999999999999994

7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.04  E-value=0.0017  Score=49.29  Aligned_cols=45  Identities=24%  Similarity=0.217  Sum_probs=35.1

Q ss_pred             chhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           14 SVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      +++-..++.........++..+++.     |.-||||||+++-+++.+|+
T Consensus         7 ~~~~t~~lg~~l~~~l~~g~Vv~L~-----GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802           7 DEEATLALGERLAEALKAGDVVLLS-----GDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             CHHHHHHHHHHHHhhCCCCCEEEEE-----cCCcCChHHHHHHHHHHcCC
Confidence            4445555555555555677888898     99999999999999999985

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.03  E-value=0.0018  Score=52.91  Aligned_cols=42  Identities=26%  Similarity=0.284  Sum_probs=29.8

Q ss_pred             CchhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           13 PSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ....++..+-+...  ...+..+++.     |++|+|||++++.+++..
T Consensus        21 ~~~~~~~~l~~~~~--~~~~~~lll~-----G~~G~GKT~la~~~~~~~   62 (226)
T TIGR03420        21 GNAELLAALRQLAA--GKGDRFLYLW-----GESGSGKSHLLQAACAAA   62 (226)
T ss_pred             CcHHHHHHHHHHHh--cCCCCeEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            34445554444332  3456678899     999999999999998876

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.03  E-value=0.0012  Score=57.23  Aligned_cols=40  Identities=28%  Similarity=0.311  Sum_probs=29.0

Q ss_pred             HHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           17 LMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +..++.........++..|-|.     |+|||||||++..|...+
T Consensus        41 ~~~~l~~~~~~~~~~~~~igi~-----G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         41 LAQELLDALLPHTGNALRIGIT-----GVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             HHHHHHHHHhhcCCCcEEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            4445555544334567777777     999999999999987776

>PRK04195 replication factor C large subunit; Provisional

Probab=97.03  E-value=0.0012  Score=60.48  Aligned_cols=34  Identities=35%  Similarity=0.668  Sum_probs=28.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .++..++|.     ||||+||||+++.|++.+++.++..
T Consensus        37 ~~~~~lLL~-----GppG~GKTtla~ala~el~~~~iel   70 (482)
T PRK04195         37 KPKKALLLY-----GPPGVGKTSLAHALANDYGWEVIEL   70 (482)
T ss_pred             CCCCeEEEE-----CCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            336678888     9999999999999999999876654

>PHA02244 ATPase-like protein

Probab=97.02  E-value=0.001  Score=58.20  Aligned_cols=35  Identities=23%  Similarity=0.270  Sum_probs=30.1

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM   71 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l   71 (251)
                      +..+.+.     ||||+|||++++.|+..++.+++.+..+
T Consensus       119 ~~PVLL~-----GppGtGKTtLA~aLA~~lg~pfv~In~l  153 (383)
T PHA02244        119 NIPVFLK-----GGAGSGKNHIAEQIAEALDLDFYFMNAI  153 (383)
T ss_pred             CCCEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence            3448888     9999999999999999999998877644

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.02  E-value=0.00046  Score=55.55  Aligned_cols=23  Identities=39%  Similarity=0.554  Sum_probs=19.0

Q ss_pred             ecccCCCCCChhHHHHHHHHHhC
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~   62 (251)
                      |+|+||+||||||+...|...+.
T Consensus         4 ilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            44559999999999998887764

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.00  E-value=0.00077  Score=60.05  Aligned_cols=34  Identities=24%  Similarity=0.536  Sum_probs=29.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .+|..+++.     ||||+|||++++.++...+.+++..
T Consensus       177 ~~pkgvLL~-----GppGTGKT~LAkalA~~l~~~fi~i  210 (398)
T PTZ00454        177 DPPRGVLLY-----GPPGTGKTMLAKAVAHHTTATFIRV  210 (398)
T ss_pred             CCCceEEEE-----CCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            356678899     9999999999999999998776654

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.99  E-value=0.0014  Score=60.32  Aligned_cols=25  Identities=28%  Similarity=0.461  Sum_probs=22.1

Q ss_pred             cCCCCCChhHHHHHHHHHhCCceec
Q 025529           43 AGPPGSGKGTQSPIIKDEYCLCHLA   67 (251)
Q Consensus        43 ~G~~gsGKST~a~~La~~~~~~~i~   67 (251)
                      +||+||||||..+.|++.+|+.+..
T Consensus        51 tGP~G~GKtttv~~La~elg~~v~E   75 (519)
T PF03215_consen   51 TGPSGCGKTTTVKVLAKELGFEVQE   75 (519)
T ss_pred             ECCCCCCHHHHHHHHHHHhCCeeEE
Confidence            4999999999999999999876543

>PRK08116 hypothetical protein; Validated

Probab=96.99  E-value=0.014  Score=49.33  Aligned_cols=38  Identities=24%  Similarity=0.356  Sum_probs=28.9

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh---C--CceechhHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRA   74 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~   74 (251)
                      +.-++|.     |++|+|||.++..++..+   +  +.++++.+++..
T Consensus       114 ~~gl~l~-----G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~  156 (268)
T PRK08116        114 NVGLLLW-----GSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR  156 (268)
T ss_pred             CceEEEE-----CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            3348888     999999999999999876   3  345666666544

>PRK09087 hypothetical protein; Validated

Probab=96.98  E-value=0.0011  Score=54.54  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=30.6

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDML   72 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li   72 (251)
                      .+.++|.     |++|||||++++.+++..+..+++.+++.
T Consensus        44 ~~~l~l~-----G~~GsGKThLl~~~~~~~~~~~i~~~~~~   79 (226)
T PRK09087         44 SPVVVLA-----GPVGSGKTHLASIWREKSDALLIHPNEIG   79 (226)
T ss_pred             CCeEEEE-----CCCCCCHHHHHHHHHHhcCCEEecHHHcc
Confidence            4458888     99999999999999999988888886543

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.98  E-value=0.00096  Score=56.91  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=31.4

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM   71 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l   71 (251)
                      +..++|+     ||.+||||.+|-.||+++|..+||+|.+
T Consensus         3 ~~~i~I~-----GPTAsGKT~lai~LAk~~~~eIIs~DSm   37 (308)
T COG0324           3 PKLIVIA-----GPTASGKTALAIALAKRLGGEIISLDSM   37 (308)
T ss_pred             ccEEEEE-----CCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence            4457777     9999999999999999999999999865

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.98  E-value=0.00086  Score=59.14  Aligned_cols=33  Identities=30%  Similarity=0.564  Sum_probs=28.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      +|..+++.     ||||+|||++++.++..++.+++.+
T Consensus       155 ~p~gvLL~-----GppGtGKT~lakaia~~l~~~~~~v  187 (364)
T TIGR01242       155 PPKGVLLY-----GPPGTGKTLLAKAVAHETNATFIRV  187 (364)
T ss_pred             CCceEEEE-----CCCCCCHHHHHHHHHHhCCCCEEec
Confidence            46668899     9999999999999999998776554

Many proteins may score above the trusted cutoff because an internal

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.006  Score=56.20  Aligned_cols=41  Identities=24%  Similarity=0.448  Sum_probs=34.4

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh--HHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG--DMLRAAVA   77 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~--~li~~~~~   77 (251)
                      |.-++++     ||||||||-+|++.|.+-|..||++.  +|+.+++.
T Consensus       545 PsGvLL~-----GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG  587 (802)
T KOG0733|consen  545 PSGVLLC-----GPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG  587 (802)
T ss_pred             CCceEEe-----CCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhh
Confidence            5568899     99999999999999999999988884  66665544

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.97  E-value=0.0015  Score=56.05  Aligned_cols=31  Identities=39%  Similarity=0.580  Sum_probs=25.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCce
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH   65 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~   65 (251)
                      ..+..++|.     ||||+|||++++.++..++..+
T Consensus        28 ~~~~~~ll~-----Gp~G~GKT~la~~ia~~~~~~~   58 (305)
T TIGR00635        28 EALDHLLLY-----GPPGLGKTTLAHIIANEMGVNL   58 (305)
T ss_pred             CCCCeEEEE-----CCCCCCHHHHHHHHHHHhCCCE
Confidence            344568888     9999999999999999997653

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=96.97  E-value=0.00088  Score=58.12  Aligned_cols=31  Identities=16%  Similarity=0.184  Sum_probs=27.4

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA   67 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~   67 (251)
                      ..+++++     |++||||||+++.|+..++.+++.
T Consensus       162 ~~~~~~~-----G~~~~gkstl~~~l~~~~~~~~v~  192 (325)
T TIGR01526       162 VKTVAIL-----GGESTGKSTLVNKLAAVFNTTSAW  192 (325)
T ss_pred             CcEEEEE-----CCCCCCHHHHHHHHHHhhCCCEEe
Confidence            4578999     999999999999999999987743

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.0011  Score=58.73  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=29.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ++..-.++.     ||||+||||+..++|..+++.+.+.
T Consensus       233 awKRGYLLY-----GPPGTGKSS~IaAmAn~L~ydIydL  266 (457)
T KOG0743|consen  233 AWKRGYLLY-----GPPGTGKSSFIAAMANYLNYDIYDL  266 (457)
T ss_pred             chhccceee-----CCCCCCHHHHHHHHHhhcCCceEEe
Confidence            345568999     9999999999999999999877665

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.95  E-value=0.00087  Score=59.76  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=27.9

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ..++|.     ||||+|||++|+.|++.++.++...+
T Consensus       117 ~~iLL~-----GP~GsGKT~lAraLA~~l~~pf~~~d  148 (413)
T TIGR00382       117 SNILLI-----GPTGSGKTLLAQTLARILNVPFAIAD  148 (413)
T ss_pred             ceEEEE-----CCCCcCHHHHHHHHHHhcCCCeEEec
Confidence            468888     99999999999999999988876543

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.95  E-value=0.00058  Score=53.53  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=18.6

Q ss_pred             ecccCCCCCChhHHHHHHHHHh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~   61 (251)
                      +.++|+|||||||++..++..+
T Consensus         3 ~~~~G~~G~GKTt~~~~la~~~   24 (173)
T cd03115           3 ILLVGLQGVGKTTTAAKLALYL   24 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            3444999999999999998876

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=96.95  E-value=0.00062  Score=53.38  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=19.8

Q ss_pred             ecccCCCCCChhHHHHHHHHHhC
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~   62 (251)
                      ++|+|++|||||++|..++...+
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~~~   24 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAELG   24 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcC
Confidence            45669999999999999988765

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>COG4240 Predicted kinase [General function prediction only]

Probab=96.93  E-value=0.00071  Score=54.86  Aligned_cols=33  Identities=36%  Similarity=0.506  Sum_probs=24.1

Q ss_pred             ecccCCCCCChhHHHHHHHHHh---C---CceechhHHH
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY---C---LCHLATGDML   72 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~---~---~~~i~~~~li   72 (251)
                      ++|+||-||||||++..|...+   |   ...+|.||+.
T Consensus        53 ~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlY   91 (300)
T COG4240          53 VGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLY   91 (300)
T ss_pred             EEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhh
Confidence            3456999999999998776555   2   3566778764

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=96.93  E-value=0.13  Score=46.95  Aligned_cols=179  Identities=15%  Similarity=0.113  Sum_probs=93.0

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII  105 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll  105 (251)
                      .+.+..|+|.     |..+|||....+.|.+.++   +.+.+...--..  +...++-..+-..+-..+.+         
T Consensus       296 ~~~~vlivfe-----G~DaAGKgg~I~rl~~~ldPrg~~v~~~~~Pt~~--E~~~~~lwRf~~~lP~~G~i---------  359 (493)
T TIGR03708       296 RKRSLVLVFE-----GWDAAGKGGAIRRVTEALDARQYRVVPIAAPTDE--EKAQHYLWRFWRHIPRRGRI---------  359 (493)
T ss_pred             CCCCEEEEEE-----cccCCCCcHHHHHHHhhcCCCeeEEEeCCCcCHH--HHcCcHHHHHHHhCCCCCeE---------
Confidence            5678899999     9999999999999999884   444333210000  00111111111111111100         


Q ss_pred             HHHHcCCCCCCceEE---eCCCCC------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecc
Q 025529          106 DEAMKKPSCQKGFIL---DGFPRT------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHT  176 (251)
Q Consensus       106 ~~~l~~~~~~~~~Ii---dg~~~~------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~  176 (251)
                        .+..-.-...+++   .|+...      ..+...|+..+...|.. -+-++|.+|.++..+|+..|..++...     
T Consensus       360 --~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~-ivKf~LhIsk~EQ~~R~~~r~~~p~k~-----  431 (493)
T TIGR03708       360 --TIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAI-VVKFWLHIDKEEQLRRFEERENTPFKR-----  431 (493)
T ss_pred             --EEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCE-EEEEEEEcCHHHHHHHHHHHhcCCccC-----
Confidence              0000000011222   233221      23334456666666664 367899999999999999986433211     


Q ss_pred             cCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhh-CCcEEEEcCCCChhH---HHHHHHHHhc
Q 025529          177 KFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQE---VTSEVQKALS  250 (251)
Q Consensus       177 ~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~~ee---v~~~i~~~l~  250 (251)
                                         ++-...+-.-+++...|...+..++..-.. ...|++|+++..--.   |.+.|.+.|+
T Consensus       432 -------------------WK~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK~~ar~~v~~~l~~~l~  490 (493)
T TIGR03708       432 -------------------YKITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEANDKRYARIKVLRTVCDAIE  490 (493)
T ss_pred             -------------------CcCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCChHHHHHHHHHHHHHHHH
Confidence                               111222233345567777766666554442 347999999744322   3344444443

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.92  E-value=0.0009  Score=61.48  Aligned_cols=35  Identities=29%  Similarity=0.505  Sum_probs=29.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ..+..+++.     ||||+|||++++.++...+.+++.++
T Consensus        86 ~~~~giLL~-----GppGtGKT~la~alA~~~~~~~~~i~  120 (495)
T TIGR01241        86 KIPKGVLLV-----GPPGTGKTLLAKAVAGEAGVPFFSIS  120 (495)
T ss_pred             CCCCcEEEE-----CCCCCCHHHHHHHHHHHcCCCeeecc
Confidence            345668899     99999999999999999988877653

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=96.92  E-value=0.0017  Score=56.69  Aligned_cols=115  Identities=15%  Similarity=0.135  Sum_probs=65.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~  110 (251)
                      +...+++-     |++|||||++...|.+. +..++++..+.+..   ++.+|....     ..+ +-..+...+...+.
T Consensus       140 ~~~~ivl~-----G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~~-----~qp-sQ~~Fe~~l~~~l~  204 (345)
T PRK11784        140 QFPLVVLG-----GNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLGG-----PQP-SQKDFENLLAEALL  204 (345)
T ss_pred             cCceEecC-----CCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCCC-----CCc-chHHHHHHHHHHHH
Confidence            34445555     99999999999999875 77788887654431   122211110     000 12234445555555


Q ss_pred             CCCCCCceEEeCCCCCHHHH---HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          111 KPSCQKGFILDGFPRTEVQA---QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       111 ~~~~~~~~Iidg~~~~~~~~---~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ..+..+.+++++-.+.+-..   ..|.+.|.   .  .-+|++++|.+...+|+....
T Consensus       205 ~~~~~~~i~vE~Es~~IG~~~lP~~l~~~m~---~--~~~v~i~~~~e~Rv~~l~~~Y  257 (345)
T PRK11784        205 KLDPARPIVVEDESRRIGRVHLPEALYEAMQ---Q--APIVVVEAPLEERVERLLEDY  257 (345)
T ss_pred             cCCCCCeEEEEeccccccCccCCHHHHHHHh---h--CCEEEEECCHHHHHHHHHHHh
Confidence            55544566676532222111   12222222   2  236789999999999998764

>COG3911 Predicted ATPase [General function prediction only]

Probab=96.92  E-value=0.0068  Score=46.01  Aligned_cols=29  Identities=34%  Similarity=0.565  Sum_probs=23.1

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL   66 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i   66 (251)
                      ..++++.     |+||+||||+...|+.. |+..+
T Consensus         9 ~~~fIlt-----GgpGaGKTtLL~aLa~~-Gfatv   37 (183)
T COG3911           9 HKRFILT-----GGPGAGKTTLLAALARA-GFATV   37 (183)
T ss_pred             ceEEEEe-----CCCCCcHHHHHHHHHHc-Cceee
Confidence            3467777     99999999999999886 65443

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.0017  Score=60.66  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=29.7

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ..+++.+++.     ||||+|||++++.+|+.+|-.++-+
T Consensus       347 ~~kGpILcLV-----GPPGVGKTSLgkSIA~al~RkfvR~  381 (782)
T COG0466         347 KLKGPILCLV-----GPPGVGKTSLGKSIAKALGRKFVRI  381 (782)
T ss_pred             cCCCcEEEEE-----CCCCCCchhHHHHHHHHhCCCEEEE
Confidence            4578889999     9999999999999999998665533

>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]

Probab=96.91  E-value=0.021  Score=45.36  Aligned_cols=33  Identities=12%  Similarity=0.123  Sum_probs=24.1

Q ss_pred             HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          131 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       131 ~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                      ..|.++...+|..+ .+||+..+-.+++++=.-|
T Consensus       110 ~k~~ki~kd~GciF-G~Iflas~ide~LqaNS~R  142 (291)
T KOG4622|consen  110 HKFQKIAKDHGCIF-GIIFLASGIDEALQANSHR  142 (291)
T ss_pred             hHHHHHHHHcCCee-eeeehhhhHHHHHHhcccc
Confidence            34556666677665 6788999999999886655

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.90  E-value=0.0011  Score=52.01  Aligned_cols=28  Identities=25%  Similarity=0.557  Sum_probs=23.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      +-..++|.     ||+|+|||.+++.|++.+..
T Consensus         2 p~~~~ll~-----GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    2 PKSNFLLA-----GPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             -SEEEEEE-----SSTTSSHHHHHHHHHHHHT-
T ss_pred             CEEEEEEE-----CCCCCCHHHHHHHHHHHhcc
Confidence            34567778     99999999999999999985

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.88  E-value=0.0017  Score=59.16  Aligned_cols=38  Identities=24%  Similarity=0.334  Sum_probs=29.4

Q ss_pred             HHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           21 LLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        21 ~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      .+......++.+..++|.     ||||+||||+|+.+++.++.
T Consensus        25 ~L~~~i~~~~l~~~~Lf~-----GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         25 LIINALKKNSISHAYIFA-----GPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             HHHHHHHcCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhcc
Confidence            334444445556678999     99999999999999999864

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=96.88  E-value=0.0034  Score=55.30  Aligned_cols=36  Identities=25%  Similarity=0.509  Sum_probs=29.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-------CceechhH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-------LCHLATGD   70 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-------~~~i~~~~   70 (251)
                      .++..|+++     ||.|+||||....||.+|.       +-+|++|.
T Consensus       201 ~~~~vi~LV-----GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt  243 (407)
T COG1419         201 EQKRVIALV-----GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT  243 (407)
T ss_pred             ccCcEEEEE-----CCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence            357789999     9999999999889988884       45666664

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=96.85  E-value=0.00063  Score=50.45  Aligned_cols=29  Identities=28%  Similarity=0.394  Sum_probs=20.0

Q ss_pred             EEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           35 LILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        35 i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ++++     |+||.||||+++.|++..|..+..+
T Consensus         2 vLle-----g~PG~GKT~la~~lA~~~~~~f~RI   30 (131)
T PF07726_consen    2 VLLE-----GVPGVGKTTLAKALARSLGLSFKRI   30 (131)
T ss_dssp             EEEE-----S---HHHHHHHHHHHHHTT--EEEE
T ss_pred             EeeE-----CCCccHHHHHHHHHHHHcCCceeEE
Confidence            4566     9999999999999999998765533

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.85  E-value=0.0041  Score=50.97  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=26.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh-----CCceechhH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----CLCHLATGD   70 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~~~   70 (251)
                      .+..++|.     |++|+|||++++.++...     .+.+++...
T Consensus        41 ~~~~~~l~-----G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~   80 (227)
T PRK08903         41 ADRFFYLW-----GEAGSGRSHLLQALVADASYGGRNARYLDAAS   80 (227)
T ss_pred             CCCeEEEE-----CCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence            34468888     999999999999999876     445555544

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=96.85  E-value=0.0055  Score=56.00  Aligned_cols=116  Identities=19%  Similarity=0.232  Sum_probs=59.3

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh-----HHHHHHHHcCCchH-HHHHHHHHcCCCcCHHHH
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG-----DMLRAAVAAKTPLG-IKAKEAMDKGELVSDDLV  101 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~-----~li~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~  101 (251)
                      .++-..-++|.     ||-|+||||+|+.||+.+++..-.++     +..++.+..++... .++...-.+|    -+-+
T Consensus        34 ~~ri~hAYlfs-----G~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~g----Vddi  104 (515)
T COG2812          34 NGRIAHAYLFS-----GPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTG----VDDI  104 (515)
T ss_pred             hCcchhhhhhc-----CCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccC----hHHH
Confidence            34445668888     99999999999999999987652221     12223333331111 1111111111    1223


Q ss_pred             HHHHHHHHcCCCCC--CceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCH
Q 025529          102 VGIIDEAMKKPSCQ--KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDD  154 (251)
Q Consensus       102 ~~ll~~~l~~~~~~--~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~  154 (251)
                      .++++.........  +-||||-.=  +--...|..++++.--.|.+++|+-+..
T Consensus       105 R~i~e~v~y~P~~~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~hV~FIlATT  157 (515)
T COG2812         105 REIIEKVNYAPSEGRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSHVKFILATT  157 (515)
T ss_pred             HHHHHHhccCCccccceEEEEecHH--hhhHHHHHHHhcccccCccCeEEEEecC
Confidence            34443333332222  568998642  2222334455555445666666665543

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.84  E-value=0.00073  Score=51.67  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=18.9

Q ss_pred             ecccCCCCCChhHHHHHHHHHh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++|+|+||+||||++..++...
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHH
Confidence            4455999999999999998876

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.022  Score=53.48  Aligned_cols=42  Identities=26%  Similarity=0.487  Sum_probs=35.8

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh--HHHHHHHHc
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG--DMLRAAVAA   78 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~--~li~~~~~~   78 (251)
                      +.-|++.     ||||+|||.++..++...++.+|++.  +++.+.+.+
T Consensus       701 ~~giLLy-----GppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGa  744 (952)
T KOG0735|consen  701 RTGILLY-----GPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGA  744 (952)
T ss_pred             ccceEEE-----CCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcc
Confidence            5569999     99999999999999999999999984  676666543

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=96.83  E-value=0.00057  Score=54.03  Aligned_cols=30  Identities=23%  Similarity=0.145  Sum_probs=21.3

Q ss_pred             ecccCCCCCChhHHHHHHHHHh---C--Cceechh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY---C--LCHLATG   69 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~---~--~~~i~~~   69 (251)
                      ++|.|+||+|||+++..++...   |  +.++++.
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e   36 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE   36 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence            3455999999999999886654   2  3455553

A related protein is found in archaea.

>PRK06620 hypothetical protein; Validated

Probab=96.83  E-value=0.0022  Score=52.29  Aligned_cols=30  Identities=23%  Similarity=0.282  Sum_probs=25.3

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceec
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA   67 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~   67 (251)
                      ..++|.     ||+|||||++++.+++..+..+++
T Consensus        45 ~~l~l~-----Gp~G~GKThLl~a~~~~~~~~~~~   74 (214)
T PRK06620         45 FTLLIK-----GPSSSGKTYLTKIWQNLSNAYIIK   74 (214)
T ss_pred             ceEEEE-----CCCCCCHHHHHHHHHhccCCEEcc
Confidence            458888     999999999999999988765554

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.82  E-value=0.0013  Score=59.16  Aligned_cols=34  Identities=38%  Similarity=0.639  Sum_probs=28.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .++..++|.     ||||+|||++++.++..++.+++.+
T Consensus       215 ~~p~gVLL~-----GPPGTGKT~LAraIA~el~~~fi~V  248 (438)
T PTZ00361        215 KPPKGVILY-----GPPGTGKTLLAKAVANETSATFLRV  248 (438)
T ss_pred             CCCcEEEEE-----CCCCCCHHHHHHHHHHhhCCCEEEE
Confidence            356678888     9999999999999999998766644

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.82  E-value=0.0016  Score=55.47  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=22.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..++|.     ||||+||||+|+.+++.+
T Consensus        57 ~~~~vll~-----G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        57 PTLHMSFT-----GNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             CCceEEEE-----cCCCCCHHHHHHHHHHHH
Confidence            34578999     999999999998888766

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.82  E-value=0.0022  Score=50.67  Aligned_cols=40  Identities=33%  Similarity=0.596  Sum_probs=30.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh-----CCceechhHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRA   74 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~~~li~~   74 (251)
                      ..+..++|.     |++|+|||.+|..++.++     .+.++++.+++..
T Consensus        45 ~~~~~l~l~-----G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~   89 (178)
T PF01695_consen   45 ENGENLILY-----GPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE   89 (178)
T ss_dssp             SC--EEEEE-----ESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred             ccCeEEEEE-----hhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence            356789999     999999999999998765     3567788887765

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=96.82  E-value=0.0012  Score=55.30  Aligned_cols=29  Identities=41%  Similarity=0.628  Sum_probs=25.3

Q ss_pred             EEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           35 LILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        35 i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ++++     ||||.||||+|..+|.++|...-.+
T Consensus        55 vLl~-----GPPGlGKTTLA~IIA~Emgvn~k~t   83 (332)
T COG2255          55 VLLF-----GPPGLGKTTLAHIIANELGVNLKIT   83 (332)
T ss_pred             EEee-----CCCCCcHHHHHHHHHHHhcCCeEec
Confidence            7888     9999999999999999998765443

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=96.80  E-value=0.00037  Score=58.17  Aligned_cols=55  Identities=22%  Similarity=0.221  Sum_probs=36.0

Q ss_pred             CCcccccccCCCCchhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529            1 MASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      |||+-+-.+.+....--.+.+.......-.++-.+.|+     |+.||||||+.+.|+-.
T Consensus         1 ~~~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242          1 MASPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALI-----GPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             CCCCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEE-----CCCCCCHHHHHHHHHhh
Confidence            77777766665532110012333333344567788888     99999999999999864

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.80  E-value=0.0013  Score=52.94  Aligned_cols=25  Identities=32%  Similarity=0.529  Sum_probs=22.2

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      |..|+++     ||+|+||||.+-.||.++
T Consensus         1 p~vi~lv-----GptGvGKTTt~aKLAa~~   25 (196)
T PF00448_consen    1 PKVIALV-----GPTGVGKTTTIAKLAARL   25 (196)
T ss_dssp             SEEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEE-----CCCCCchHhHHHHHHHHH
Confidence            4567888     999999999999999888

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.79  E-value=0.00084  Score=62.70  Aligned_cols=26  Identities=31%  Similarity=0.519  Sum_probs=24.0

Q ss_pred             cCCCCCChhHHHHHHHHHhCCceech
Q 025529           43 AGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        43 ~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      +||||.||||+|+.+|+.-|+.++.+
T Consensus       332 ~GppGlGKTTLAHViAkqaGYsVvEI  357 (877)
T KOG1969|consen  332 CGPPGLGKTTLAHVIAKQAGYSVVEI  357 (877)
T ss_pred             ecCCCCChhHHHHHHHHhcCceEEEe
Confidence            59999999999999999999988765

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.0013  Score=55.93  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=30.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD   70 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~   70 (251)
                      ...+|+++     ||.|||||-+|+-||+.+++|+--+|.
T Consensus        96 ~KSNILLi-----GPTGsGKTlLAqTLAk~LnVPFaiADA  130 (408)
T COG1219          96 SKSNILLI-----GPTGSGKTLLAQTLAKILNVPFAIADA  130 (408)
T ss_pred             eeccEEEE-----CCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence            34579999     999999999999999999999865553

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=96.79  E-value=0.00087  Score=51.78  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             eecccCCCCCChhHHHHHHHHHh
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      |++|+|++||||||++..|...+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            35566999999999999998876

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.78  E-value=0.0025  Score=55.33  Aligned_cols=31  Identities=35%  Similarity=0.519  Sum_probs=26.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL   66 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i   66 (251)
                      .+..++|.     ||||+||||+++.+++.++..+.
T Consensus        50 ~~~~~ll~-----GppG~GKT~la~~ia~~l~~~~~   80 (328)
T PRK00080         50 ALDHVLLY-----GPPGLGKTTLANIIANEMGVNIR   80 (328)
T ss_pred             CCCcEEEE-----CCCCccHHHHHHHHHHHhCCCeE
Confidence            44568888     99999999999999999987543

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.78  E-value=0.0012  Score=50.08  Aligned_cols=22  Identities=50%  Similarity=0.884  Sum_probs=19.7

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +|.++     |+.|||||||++.|...
T Consensus         3 rimli-----G~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    3 RIMLI-----GPSGSGKTTLAQALNGE   24 (143)
T ss_pred             eEEEE-----CCCCCCHHHHHHHHcCC
Confidence            68888     99999999999999664

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.78  E-value=0.0034  Score=52.07  Aligned_cols=53  Identities=19%  Similarity=0.336  Sum_probs=39.2

Q ss_pred             HHHHHHHhhccC----C-CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh--HHHHHH
Q 025529           18 MTELLRRMKCAS----K-PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG--DMLRAA   75 (251)
Q Consensus        18 ~~~~~~~~~~~~----~-~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~--~li~~~   75 (251)
                      .-.++-+|...|    . -|.+++|.     ||||+|||-+|+.|+.+.+++++.+.  .++-++
T Consensus       132 kcrli~~yLenPe~Fg~WAPknVLFy-----GppGTGKTm~Akalane~kvp~l~vkat~liGeh  191 (368)
T COG1223         132 KCRLIMEYLENPERFGDWAPKNVLFY-----GPPGTGKTMMAKALANEAKVPLLLVKATELIGEH  191 (368)
T ss_pred             HHHHHHHHhhChHHhcccCcceeEEE-----CCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence            334555665444    2 37789999     99999999999999999998887663  344443

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.0062  Score=55.29  Aligned_cols=35  Identities=29%  Similarity=0.485  Sum_probs=31.2

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .+-|.-+++.     ||||+|||-+|+.+|-+-|++++..
T Consensus       334 GKLPKGVLLv-----GPPGTGKTlLARAvAGEA~VPFF~~  368 (752)
T KOG0734|consen  334 GKLPKGVLLV-----GPPGTGKTLLARAVAGEAGVPFFYA  368 (752)
T ss_pred             CcCCCceEEe-----CCCCCchhHHHHHhhcccCCCeEec
Confidence            3557779999     9999999999999999999998876

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.74  E-value=0.0012  Score=42.58  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=18.5

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..+|.     |+.||||||+..++.--+
T Consensus        25 ~tli~-----G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLIT-----GPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            56677     999999999998875543

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.74  E-value=0.0029  Score=52.50  Aligned_cols=39  Identities=31%  Similarity=0.467  Sum_probs=25.8

Q ss_pred             HHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           18 MTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        18 ~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..+++........+..+|=|.     ||||+||||+...|...|
T Consensus        15 ~~~ll~~l~~~~g~a~~iGiT-----G~PGaGKSTli~~l~~~~   53 (266)
T PF03308_consen   15 ARELLKRLYPHTGRAHVIGIT-----GPPGAGKSTLIDALIREL   53 (266)
T ss_dssp             HHHHHHHHGGGTT-SEEEEEE-----E-TTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCceEEEee-----CCCCCcHHHHHHHHHHHH
Confidence            344555554333455555555     999999999999999888

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK08181 transposase; Validated

Probab=96.72  E-value=0.014  Score=49.28  Aligned_cols=39  Identities=28%  Similarity=0.479  Sum_probs=30.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh---C--CceechhHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRA   74 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~   74 (251)
                      .+..++|.     ||+|+|||.++..++...   |  +.++++.+++..
T Consensus       105 ~~~nlll~-----Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~  148 (269)
T PRK08181        105 KGANLLLF-----GPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK  148 (269)
T ss_pred             cCceEEEE-----ecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence            45579999     999999999999998654   4  556677777655

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.72  E-value=0.0087  Score=48.64  Aligned_cols=25  Identities=36%  Similarity=0.619  Sum_probs=22.2

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .-+++.     ||.|+||+|+.+.|-++++
T Consensus        38 ~~ivl~-----gpsg~gk~tll~~l~ee~~   62 (231)
T KOG0707|consen   38 KPIVLS-----GPSGVGKSTLLKRLREELG   62 (231)
T ss_pred             ceEEEe-----CCCCcchhHHHHHHHHHcC
Confidence            347777     9999999999999999997

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.72  E-value=0.0016  Score=53.18  Aligned_cols=35  Identities=17%  Similarity=0.259  Sum_probs=25.9

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD   70 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~   70 (251)
                      ++.+..++|.     |+||+||||+|+.|+.  ...+++.|.
T Consensus         9 ~~~~~~~liy-----G~~G~GKtt~a~~~~~--~~~~~~~d~   43 (220)
T TIGR01618         9 KRIPNMYLIY-----GKPGTGKTSTIKYLPG--KTLVLSFDM   43 (220)
T ss_pred             CCCCcEEEEE-----CCCCCCHHHHHHhcCC--CCEEEeccc
Confidence            3446778888     9999999999999963  244555544

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.72  E-value=0.005  Score=55.47  Aligned_cols=26  Identities=27%  Similarity=0.517  Sum_probs=22.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +|..+++.     |++|+||||++..|+..+
T Consensus        94 ~p~vI~lv-----G~~GsGKTTtaakLA~~L  119 (437)
T PRK00771         94 KPQTIMLV-----GLQGSGKTTTAAKLARYF  119 (437)
T ss_pred             CCeEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence            46678888     999999999999999877

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.69  E-value=0.0036  Score=52.90  Aligned_cols=42  Identities=29%  Similarity=0.358  Sum_probs=30.9

Q ss_pred             hhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           15 VDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..+.+++++........+.+|=|.     |+||+||||+...|..+|
T Consensus        34 ~~~a~~ll~~l~p~tG~a~viGIT-----G~PGaGKSTli~~L~~~l   75 (323)
T COG1703          34 RALARELLRALYPRTGNAHVIGIT-----GVPGAGKSTLIEALGREL   75 (323)
T ss_pred             hhHHHHHHHHHhhcCCCCcEEEec-----CCCCCchHHHHHHHHHHH
Confidence            344567777766444455555555     999999999999999888

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.022  Score=53.93  Aligned_cols=55  Identities=25%  Similarity=0.509  Sum_probs=41.0

Q ss_pred             hhHHHHHHHHhhc---------cC-CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh--HHHHH
Q 025529           15 VDLMTELLRRMKC---------AS-KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG--DMLRA   74 (251)
Q Consensus        15 ~~~~~~~~~~~~~---------~~-~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~--~li~~   74 (251)
                      ++++.++.+-+.+         .+ +++.-|++.     ||||+|||-+|++.|-++.+.++++.  +|+.-
T Consensus       678 eevK~eIldTIqlPL~hpeLfssglrkRSGILLY-----GPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM  744 (953)
T KOG0736|consen  678 EEVKTEILDTIQLPLKHPELFSSGLRKRSGILLY-----GPPGTGKTLLAKAVATECSLNFLSVKGPELLNM  744 (953)
T ss_pred             HHHHHHHHHHhcCcccChhhhhccccccceeEEE-----CCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence            3456666665532         22 446679999     99999999999999999999999884  45443

>CHL00176 ftsH cell division protein; Validated

Probab=96.69  E-value=0.0019  Score=60.84  Aligned_cols=35  Identities=31%  Similarity=0.504  Sum_probs=30.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ..+..+++.     ||||+|||++++.++...+.+++.++
T Consensus       214 ~~p~gVLL~-----GPpGTGKT~LAralA~e~~~p~i~is  248 (638)
T CHL00176        214 KIPKGVLLV-----GPPGTGKTLLAKAIAGEAEVPFFSIS  248 (638)
T ss_pred             CCCceEEEE-----CCCCCCHHHHHHHHHHHhCCCeeecc
Confidence            346678999     99999999999999999998877653

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.0032  Score=58.90  Aligned_cols=52  Identities=27%  Similarity=0.430  Sum_probs=38.5

Q ss_pred             hhHHHHHHHHhhc----cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC--ceechhHH
Q 025529           15 VDLMTELLRRMKC----ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL--CHLATGDM   71 (251)
Q Consensus        15 ~~~~~~~~~~~~~----~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~--~~i~~~~l   71 (251)
                      +|++++++..+..    ....++.+.|.     ||||.|||++++.+|+.+|-  ..++++-+
T Consensus       417 ~dVKeRILEfiAV~kLrgs~qGkIlCf~-----GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~  474 (906)
T KOG2004|consen  417 EDVKERILEFIAVGKLRGSVQGKILCFV-----GPPGVGKTSIAKSIARALNRKFFRFSVGGM  474 (906)
T ss_pred             HHHHHHHHHHHHHHhhcccCCCcEEEEe-----CCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence            4566655555542    23578889999     99999999999999999974  45566543

>PHA03138 thymidine kinase; Provisional

Probab=96.66  E-value=0.046  Score=47.29  Aligned_cols=25  Identities=28%  Similarity=0.314  Sum_probs=19.7

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.+|-|.     |+.|+||||+++.+.+.+
T Consensus        12 ~~riYle-----G~~GvGKTT~~~~~l~~~   36 (340)
T PHA03138         12 ILRIYLD-----GAFGIGKTTAAEAFLHGF   36 (340)
T ss_pred             EEEEEEE-----CCCCcCHHhHHHHHHHhh
Confidence            3456666     999999999998776654

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.65  E-value=0.002  Score=57.86  Aligned_cols=33  Identities=36%  Similarity=0.407  Sum_probs=27.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ....++|.     ||||+||||+++.+++..+..++..
T Consensus        35 ~~~~ilL~-----GppGtGKTtLA~~ia~~~~~~~~~l   67 (413)
T PRK13342         35 RLSSMILW-----GPPGTGKTTLARIIAGATDAPFEAL   67 (413)
T ss_pred             CCceEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            44568888     9999999999999999987666544

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.65  E-value=0.0018  Score=52.23  Aligned_cols=28  Identities=29%  Similarity=0.528  Sum_probs=23.1

Q ss_pred             ccCCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ..-.++-.++|+     ||+||||||+.+.|.-
T Consensus        23 l~v~~Gevv~ii-----GpSGSGKSTlLRclN~   50 (240)
T COG1126          23 LSVEKGEVVVII-----GPSGSGKSTLLRCLNG   50 (240)
T ss_pred             eeEcCCCEEEEE-----CCCCCCHHHHHHHHHC
Confidence            334577788999     9999999999999854

>CHL00206 ycf2 Ycf2; Provisional

Probab=96.65  E-value=0.0017  Score=66.72  Aligned_cols=46  Identities=15%  Similarity=0.371  Sum_probs=35.0

Q ss_pred             HHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech--hHHHH
Q 025529           21 LLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLR   73 (251)
Q Consensus        21 ~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~--~~li~   73 (251)
                      .+...+..  +|.-|+++     ||||+|||.+|++||...+++++.+  .+++.
T Consensus      1621 ~slrLGl~--pPKGILLi-----GPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1621 FSLRLALS--PSRGILVI-----GSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             HHHHcCCC--CCCceEEE-----CCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            34444433  45569999     9999999999999999999887755  45553

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.63  E-value=0.0025  Score=50.02  Aligned_cols=27  Identities=22%  Similarity=0.205  Sum_probs=21.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .++.+.|.     |++||||||+++.|...+.
T Consensus         5 ~~~ii~iv-----G~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          5 MIPLLAIA-----AWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CceEEEEE-----CCCCChHHHHHHHHHHHHh
Confidence            34456677     9999999999999987773

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.62  E-value=0.0059  Score=52.10  Aligned_cols=35  Identities=17%  Similarity=0.324  Sum_probs=31.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD   70 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~   70 (251)
                      +...++++     |+.|||||-|+-.||.+|+-..|+.|.
T Consensus         6 k~KVvvI~-----G~TGsGKSrLaVdLA~rf~~EIINsDk   40 (348)
T KOG1384|consen    6 KDKVVVIM-----GATGAGKSRLAVDLATRFPGEIINSDK   40 (348)
T ss_pred             CceEEEEe-----cCCCCChhhhHHHHHHhCCceeecccc
Confidence            45678888     999999999999999999999998874

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.0017  Score=52.74  Aligned_cols=40  Identities=28%  Similarity=0.377  Sum_probs=32.9

Q ss_pred             HHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           19 TELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        19 ~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      +++++.+...-.++..-+++     ||.||||||++..|+-+-++
T Consensus        17 keILkgvnL~v~~GEvhaiM-----GPNGsGKSTLa~~i~G~p~Y   56 (251)
T COG0396          17 KEILKGVNLTVKEGEVHAIM-----GPNGSGKSTLAYTIMGHPKY   56 (251)
T ss_pred             hhhhcCcceeEcCCcEEEEE-----CCCCCCHHHHHHHHhCCCCc
Confidence            56777777777788899999     99999999999999755433

>PRK13695 putative NTPase; Provisional

Probab=96.60  E-value=0.0022  Score=50.31  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=20.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      |++++.     |++||||||+++.++..+
T Consensus         1 ~~i~lt-----G~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          1 MKIGIT-----GPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            456677     999999999999987665

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.60  E-value=0.0014  Score=50.97  Aligned_cols=29  Identities=24%  Similarity=0.447  Sum_probs=24.7

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ...++-+|+|.     ||+||||||+.+.++.-.
T Consensus        25 ~v~~Ge~iait-----GPSG~GKStllk~va~Li   53 (223)
T COG4619          25 SVRAGEFIAIT-----GPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             eecCCceEEEe-----CCCCccHHHHHHHHHhcc
Confidence            34577789999     999999999999998854

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.59  E-value=0.0032  Score=49.42  Aligned_cols=38  Identities=26%  Similarity=0.379  Sum_probs=22.4

Q ss_pred             HHHHHHhhc-cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           19 TELLRRMKC-ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        19 ~~~~~~~~~-~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +++.+...+ ....+..+++.     |++|+|||++.+.+.+.+
T Consensus        10 ~~l~~~l~~~~~~~~~~~ll~-----G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen   10 ERLRDLLDAAQSGSPRNLLLT-----GESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             HHHHHTTGGTSS-----EEE------B-TTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            334444432 34567788888     999999999999887776

>PHA03133 thymidine kinase; Provisional

Probab=96.59  E-value=0.27  Score=42.88  Aligned_cols=23  Identities=22%  Similarity=0.187  Sum_probs=20.0

Q ss_pred             CcCEEEEEecCHHHHHHHHhcCc
Q 025529          143 KVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       143 ~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      .-+-+|.++++.++-.+|+.+|.
T Consensus       193 pG~NiVl~~L~~~E~~~RL~~R~  215 (368)
T PHA03133        193 PGTNLVLGALPEAAHAERLAQRQ  215 (368)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcC
Confidence            34578899999999999999984

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=96.59  E-value=0.003  Score=54.00  Aligned_cols=34  Identities=15%  Similarity=0.211  Sum_probs=28.8

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM   71 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l   71 (251)
                      ++.|+|.     ||.|||||.+|-.||++. ...||.|.+
T Consensus         4 ~~ii~I~-----GpTasGKS~LAl~LA~~~-~eIIsaDS~   37 (300)
T PRK14729          4 NKIVFIF-----GPTAVGKSNILFHFPKGK-AEIINVDSI   37 (300)
T ss_pred             CcEEEEE-----CCCccCHHHHHHHHHHhC-CcEEeccHH
Confidence            3467777     999999999999999994 588999864

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.58  E-value=0.0025  Score=45.91  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=20.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIK   58 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La   58 (251)
                      ++..++|.     ||+||||||+++.+.
T Consensus        14 ~ge~v~I~-----GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLIT-----GDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEE-----cCCCCCHHHHHHHhh
Confidence            45678888     999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.58  E-value=0.0039  Score=60.26  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=28.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .++..++|+     ||||+||||+++.+++.++.+++..
T Consensus       347 ~~g~~i~l~-----GppG~GKTtl~~~ia~~l~~~~~~i  380 (784)
T PRK10787        347 IKGPILCLV-----GPPGVGKTSLGQSIAKATGRKYVRM  380 (784)
T ss_pred             CCCceEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            456678889     9999999999999999998776533

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.58  E-value=0.0038  Score=56.69  Aligned_cols=33  Identities=27%  Similarity=0.469  Sum_probs=26.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA   67 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~   67 (251)
                      .+....++.     ||+||||||..+.|++.+|+.++.
T Consensus       108 l~~~iLLlt-----GPsGcGKSTtvkvLskelg~~~~E  140 (634)
T KOG1970|consen  108 LGSRILLLT-----GPSGCGKSTTVKVLSKELGYQLIE  140 (634)
T ss_pred             CCceEEEEe-----CCCCCCchhHHHHHHHhhCceeee
Confidence            344455556     999999999999999999987654

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.55  E-value=0.0021  Score=58.79  Aligned_cols=29  Identities=31%  Similarity=0.604  Sum_probs=25.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      +|..++|.     ||||+|||++++.+++.++..
T Consensus       215 ~p~GILLy-----GPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       215 PPKGVLLY-----GPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             CCcceEEE-----CCCCCcHHHHHHHHHHhhccc
Confidence            45678899     999999999999999998543

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.55  E-value=0.0025  Score=46.28  Aligned_cols=23  Identities=17%  Similarity=0.367  Sum_probs=19.7

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +|+++     |++||||||+.+.|....
T Consensus         1 kI~V~-----G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVL-----GDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEE-----CSTTSSHHHHHHHHHHSS
T ss_pred             CEEEE-----CcCCCCHHHHHHHHhcCC
Confidence            46777     999999999999998753

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.55  E-value=0.051  Score=51.14  Aligned_cols=42  Identities=19%  Similarity=0.297  Sum_probs=31.5

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      ++.+.+.+.+ ...+.+..++|.     |++|+||||+++.|++.++.
T Consensus        23 ~vv~~L~~al-~~gRLpHA~LFt-----GP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         23 HVVRALTHAL-EQQRLHHAYLFT-----GTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             HHHHHHHHHH-HhCCCceEEEEE-----CCCCCCHHHHHHHHHHHhcC
Confidence            3444344333 345556778899     99999999999999999976

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.54  E-value=0.0044  Score=54.65  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      ++-+..++|.     ||+|+||||+++.+++.++.
T Consensus        35 ~~~~h~~L~~-----Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961         35 GRIHHAWLLS-----GTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             CCCCeEEEEe-----cCCCCCHHHHHHHHHHHhcC
Confidence            3445667899     99999999999999999864

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.54  E-value=0.0047  Score=56.01  Aligned_cols=31  Identities=29%  Similarity=0.404  Sum_probs=26.3

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      ++-+..++|.     ||+|+||||+|+.|++.++..
T Consensus        37 ~ri~ha~Lf~-----GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         37 GKIGHAYIFF-----GPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             CCCCeEEEEE-----CCCCCCHHHHHHHHHHhcCcc
Confidence            3445668999     999999999999999998753

>PRK06893 DNA replication initiation factor; Validated

Probab=96.54  E-value=0.0087  Score=49.26  Aligned_cols=34  Identities=15%  Similarity=0.216  Sum_probs=26.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh-----CCceechh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----CLCHLATG   69 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~~   69 (251)
                      ..+.+.+.     ||||+|||++++.++..+     ...++++.
T Consensus        38 ~~~~l~l~-----G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         38 QQPFFYIW-----GGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CCCeEEEE-----CCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            34567888     999999999999999875     44555553

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.54  E-value=0.002  Score=60.97  Aligned_cols=36  Identities=31%  Similarity=0.515  Sum_probs=31.5

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      .+.|.-+++.     ||||+|||-+|+++|-+=|+|++++.
T Consensus       341 AKiPkGvLL~-----GPPGTGKTLLAKAiAGEAgVPF~svS  376 (774)
T KOG0731|consen  341 AKIPKGVLLV-----GPPGTGKTLLAKAIAGEAGVPFFSVS  376 (774)
T ss_pred             CcCcCceEEE-----CCCCCcHHHHHHHHhcccCCceeeec
Confidence            3456668888     99999999999999999999999874

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.52  E-value=0.0025  Score=61.42  Aligned_cols=35  Identities=31%  Similarity=0.575  Sum_probs=29.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ..+..++|.     ||||+|||++++.++..++.+++.+.
T Consensus       485 ~~~~giLL~-----GppGtGKT~lakalA~e~~~~fi~v~  519 (733)
T TIGR01243       485 RPPKGVLLF-----GPPGTGKTLLAKAVATESGANFIAVR  519 (733)
T ss_pred             CCCceEEEE-----CCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence            345568889     99999999999999999988777653

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.51  E-value=0.0021  Score=44.56  Aligned_cols=30  Identities=20%  Similarity=0.193  Sum_probs=23.2

Q ss_pred             ecccCCCCCChhHHHHHHHHHh---CCceechh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY---CLCHLATG   69 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~---~~~~i~~~   69 (251)
                      ++++|..|+||||++..|+..+   |...+-.+
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            4455999999999999999887   55554444

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PLN03025 replication factor C subunit; Provisional

Probab=96.51  E-value=0.005  Score=53.27  Aligned_cols=24  Identities=46%  Similarity=0.732  Sum_probs=21.7

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +.++|.     ||||+||||+++.+++.+
T Consensus        35 ~~lll~-----Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         35 PNLILS-----GPPGTGKTTSILALAHEL   58 (319)
T ss_pred             ceEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            357888     999999999999999987

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.51  E-value=0.0028  Score=53.17  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=22.8

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      +..+++.     |++||||||+++.+++.+.
T Consensus        43 ~~~~~l~-----G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILIT-----GEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEE-----cCCCCCHHHHHHHHHHhcC
Confidence            4467888     9999999999999999875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=96.50  E-value=0.0033  Score=48.06  Aligned_cols=32  Identities=19%  Similarity=0.269  Sum_probs=26.1

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      +.-++|.     |++|+||||++..|.++ |+.+++-|
T Consensus        14 g~gvLi~-----G~sG~GKStlal~L~~~-g~~lvaDD   45 (149)
T cd01918          14 GIGVLIT-----GPSGIGKSELALELIKR-GHRLVADD   45 (149)
T ss_pred             CEEEEEE-----cCCCCCHHHHHHHHHHc-CCeEEECC
Confidence            4567888     99999999999999886 77776654

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.49  E-value=0.0061  Score=50.39  Aligned_cols=35  Identities=11%  Similarity=0.098  Sum_probs=27.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGD   70 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~   70 (251)
                      .+..+++.     ||+|+|||++++.++....     +.+++.+.
T Consensus        44 ~~~~l~l~-----Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         44 HSGYIYLW-----SREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CCCeEEEE-----CCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            34578888     9999999999999988763     45666654

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.49  E-value=0.0044  Score=53.18  Aligned_cols=39  Identities=28%  Similarity=0.388  Sum_probs=29.8

Q ss_pred             HHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           18 MTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        18 ~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+++++.+.....++..+.|.     |++||||||++..|+..+
T Consensus        20 ~~~~~~~~~~~~~~~~~i~i~-----G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        20 AKQLLDRIMPYTGNAHRVGIT-----GTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             HHHHHHhCCcccCCceEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            344555555445567788888     999999999999988865

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=96.48  E-value=0.0021  Score=49.86  Aligned_cols=21  Identities=29%  Similarity=0.251  Sum_probs=18.5

Q ss_pred             cccCCCCCChhHHHHHHHHHh
Q 025529           41 WLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~~~   61 (251)
                      .|+|++||||||++..|...+
T Consensus         5 ~i~G~~gsGKTTli~~L~~~l   25 (159)
T cd03116           5 GFVGYSGSGKTTLLEKLIPAL   25 (159)
T ss_pred             EEECCCCCCHHHHHHHHHHHH
Confidence            344999999999999999887

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.48  E-value=0.0051  Score=52.99  Aligned_cols=31  Identities=23%  Similarity=0.238  Sum_probs=24.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCce
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH   65 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~   65 (251)
                      ..+..+++.     ||||+||||+++.+++.++..+
T Consensus        41 ~~~~~lll~-----G~~G~GKT~la~~l~~~~~~~~   71 (316)
T PHA02544         41 RIPNMLLHS-----PSPGTGKTTVAKALCNEVGAEV   71 (316)
T ss_pred             CCCeEEEee-----CcCCCCHHHHHHHHHHHhCccc
Confidence            344556668     9999999999999999886543

>PHA02624 large T antigen; Provisional

Probab=96.46  E-value=0.0062  Score=56.46  Aligned_cols=43  Identities=21%  Similarity=0.191  Sum_probs=32.2

Q ss_pred             HHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           22 LRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        22 ~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ...+.....+...++|.     |||||||||++..|.+.+|-..+++.
T Consensus       421 lk~~l~giPKk~~il~~-----GPpnTGKTtf~~sLl~~L~G~vlsVN  463 (647)
T PHA02624        421 LKLIVENVPKRRYWLFK-----GPVNSGKTTLAAALLDLCGGKSLNVN  463 (647)
T ss_pred             HHHHHhcCCCCeEEEEE-----CCCCCCHHHHHHHHHHHcCCeEEEee
Confidence            33333333456689999     99999999999999999955566653

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.0028  Score=58.21  Aligned_cols=35  Identities=29%  Similarity=0.493  Sum_probs=29.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      .++..++|.     ||||+|||.+|+.++..++.++++++
T Consensus       274 ~~~~giLl~-----GpPGtGKT~lAkava~~~~~~fi~v~  308 (494)
T COG0464         274 RPPKGVLLY-----GPPGTGKTLLAKAVALESRSRFISVK  308 (494)
T ss_pred             CCCCeeEEE-----CCCCCCHHHHHHHHHhhCCCeEEEee
Confidence            345578888     99999999999999998887777664

>TIGR00101 ureG urease accessory protein UreG

Probab=96.45  E-value=0.0034  Score=50.55  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=20.9

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      |.++.+.     |++||||||+.+.+...+
T Consensus         1 ~~~i~i~-----G~~GsGKTTll~~l~~~l   25 (199)
T TIGR00101         1 PLKIGVA-----GPVGSGKTALIEALTRAL   25 (199)
T ss_pred             CeEEEEE-----CCCCCCHHHHHHHHHHhh
Confidence            3456667     999999999999998875

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK04296 thymidine kinase; Provisional

Probab=96.45  E-value=0.0019  Score=51.55  Aligned_cols=21  Identities=29%  Similarity=0.358  Sum_probs=18.0

Q ss_pred             cccCCCCCChhHHHHHHHHHh
Q 025529           41 WLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~~~   61 (251)
                      +++|+||+||||++..++.++
T Consensus         6 litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          6 FIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             EEECCCCCHHHHHHHHHHHHH
Confidence            344999999999999988877

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=96.45  E-value=0.0057  Score=56.14  Aligned_cols=32  Identities=25%  Similarity=0.298  Sum_probs=27.3

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      .++-+..++|.     ||+|+||||+|+.|++.++..
T Consensus        39 ~~ri~~a~Lf~-----Gp~G~GKTT~ArilAk~Lnc~   70 (507)
T PRK06645         39 NDRLAGGYLLT-----GIRGVGKTTSARIIAKAVNCS   70 (507)
T ss_pred             cCCCCceEEEE-----CCCCCCHHHHHHHHHHHhcCc
Confidence            34556789999     999999999999999999764

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.45  E-value=0.0062  Score=49.85  Aligned_cols=25  Identities=32%  Similarity=0.478  Sum_probs=20.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .++..+++.     |+||||||+++..++.
T Consensus        17 p~gs~~li~-----G~~GsGKT~l~~q~l~   41 (226)
T PF06745_consen   17 PKGSVVLIS-----GPPGSGKTTLALQFLY   41 (226)
T ss_dssp             ETTSEEEEE-----ESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEE-----eCCCCCcHHHHHHHHH
Confidence            456778888     9999999999987653

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=96.44  E-value=0.0057  Score=53.03  Aligned_cols=23  Identities=39%  Similarity=0.725  Sum_probs=21.1

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++|.     ||||+||||+++.+++.+
T Consensus        38 ~lll~-----Gp~GtGKT~la~~~~~~l   60 (337)
T PRK12402         38 HLLVQ-----GPPGSGKTAAVRALAREL   60 (337)
T ss_pred             eEEEE-----CCCCCCHHHHHHHHHHHh
Confidence            57788     999999999999999987

>TIGR00763 lon ATP-dependent protease La

Probab=96.44  E-value=0.0058  Score=59.21  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=27.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      +++.++|.     ||||+|||++++.|++.++.+++..
T Consensus       346 ~~~~lll~-----GppG~GKT~lAk~iA~~l~~~~~~i  378 (775)
T TIGR00763       346 KGPILCLV-----GPPGVGKTSLGKSIAKALNRKFVRF  378 (775)
T ss_pred             CCceEEEE-----CCCCCCHHHHHHHHHHHhcCCeEEE
Confidence            45578888     9999999999999999998766533

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK06921 hypothetical protein; Provisional

Probab=96.44  E-value=0.05  Score=45.85  Aligned_cols=38  Identities=21%  Similarity=0.295  Sum_probs=28.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh----CC--ceechhHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY----CL--CHLATGDMLR   73 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~----~~--~~i~~~~li~   73 (251)
                      ....++|.     |++|+|||+++..++..+    |.  .+++..+++.
T Consensus       116 ~~~~l~l~-----G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~  159 (266)
T PRK06921        116 RKNSIALL-----GQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG  159 (266)
T ss_pred             CCCeEEEE-----CCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence            45678999     999999999999998865    33  3445545443

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=96.44  E-value=0.017  Score=46.50  Aligned_cols=40  Identities=15%  Similarity=0.190  Sum_probs=26.7

Q ss_pred             HHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          211 AFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       211 ~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                      +|++....+....++.+.+--++-+.+-|+-++.|+..|.
T Consensus       208 Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID  247 (273)
T KOG1534|consen  208 KFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYID  247 (273)
T ss_pred             HHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHH
Confidence            4555555566666666666666777777888888776653

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.43  E-value=0.0061  Score=57.20  Aligned_cols=42  Identities=17%  Similarity=0.229  Sum_probs=31.1

Q ss_pred             HHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           17 LMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      +.+.+.+.+. .++.+..++|.     ||+|+||||+|+.||+.++..
T Consensus        23 vv~~L~~aI~-~grl~HAyLF~-----GPpGvGKTTlAriLAK~LnC~   64 (702)
T PRK14960         23 VSRALSSALE-RGRLHHAYLFT-----GTRGVGKTTIARILAKCLNCE   64 (702)
T ss_pred             HHHHHHHHHH-cCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhCCC
Confidence            3443444443 34456778999     999999999999999999753

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.012  Score=49.13  Aligned_cols=45  Identities=24%  Similarity=0.548  Sum_probs=35.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech--hHHHHHHHHcCC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAAVAAKT   80 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~--~~li~~~~~~~~   80 (251)
                      +|.-+++.     ||||+|||-+|+..+.+.+..+|.+  ++|+.+.+..+.
T Consensus       210 ppkgvlly-----gppgtgktl~aravanrtdacfirvigselvqkyvgega  256 (435)
T KOG0729|consen  210 PPKGVLLY-----GPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGA  256 (435)
T ss_pred             CCCceEEe-----CCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhH
Confidence            45568888     9999999999999999998777755  566666555443

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.40  E-value=0.004  Score=53.86  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=22.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..+.++     ||+||||||++..|+..+
T Consensus       113 ~~~vi~lv-----GpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        113 KPFVILVV-----GVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCeEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence            46677788     999999999999999887

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.39  E-value=0.0034  Score=51.28  Aligned_cols=31  Identities=23%  Similarity=0.446  Sum_probs=24.4

Q ss_pred             HhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           24 RMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        24 ~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+...-.++-.++|+     ||+||||||+...+.-
T Consensus        23 ~v~l~i~~Ge~vaI~-----GpSGSGKSTLLniig~   53 (226)
T COG1136          23 DVNLEIEAGEFVAIV-----GPSGSGKSTLLNLLGG   53 (226)
T ss_pred             cceEEEcCCCEEEEE-----CCCCCCHHHHHHHHhc
Confidence            333344577788999     9999999999998864

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.39  E-value=0.0055  Score=58.93  Aligned_cols=30  Identities=20%  Similarity=0.347  Sum_probs=25.9

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .++|.     ||||+|||++|+.||+.++.+++..
T Consensus       490 ~~Lf~-----GP~GvGKT~lAk~LA~~l~~~~i~i  519 (758)
T PRK11034        490 SFLFA-----GPTGVGKTEVTVQLSKALGIELLRF  519 (758)
T ss_pred             eEEEE-----CCCCCCHHHHHHHHHHHhCCCcEEe
Confidence            57888     9999999999999999998766543

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.39  E-value=0.0024  Score=51.60  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=25.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh---C--Cceechh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATG   69 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~   69 (251)
                      ++..+.+.     |+||||||++|..++...   |  ..++++.
T Consensus        11 ~g~i~~i~-----G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e   49 (209)
T TIGR02237        11 RGTITQIY-----GPPGSGKTNICMILAVNAARQGKKVVYIDTE   49 (209)
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            46667777     999999999999988654   3  4455553

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.38  E-value=0.0065  Score=55.44  Aligned_cols=32  Identities=28%  Similarity=0.343  Sum_probs=26.8

Q ss_pred             ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      ..++-+..++|.     ||+|+||||+|+.||+.++.
T Consensus        30 ~~~ri~ha~Lf~-----Gp~G~GKTT~ArilAk~LnC   61 (491)
T PRK14964         30 TLNKIPQSILLV-----GASGVGKTTCARIISLCLNC   61 (491)
T ss_pred             HcCCCCceEEEE-----CCCCccHHHHHHHHHHHHcC
Confidence            344556679999     99999999999999998754

>cd01394 radB RadB

Probab=96.37  E-value=0.0025  Score=51.84  Aligned_cols=27  Identities=26%  Similarity=0.389  Sum_probs=22.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..+.+.     |+|||||||+|..++...
T Consensus        17 ~~g~i~~i~-----G~~GsGKT~l~~~~a~~~   43 (218)
T cd01394          17 ERGTVTQVY-----GPPGTGKTNIAIQLAVET   43 (218)
T ss_pred             cCCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            346667777     999999999999998765

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=96.36  E-value=0.047  Score=53.09  Aligned_cols=42  Identities=17%  Similarity=0.332  Sum_probs=31.0

Q ss_pred             HHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           17 LMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      +.+.+.+.+ ..++.+.-++|.     |++|+||||+++.|++.+++.
T Consensus        23 v~~~L~~~i-~~~ri~Ha~Lf~-----Gp~G~GKTt~A~~lAr~L~C~   64 (824)
T PRK07764         23 VTEPLSTAL-DSGRINHAYLFS-----GPRGCGKTSSARILARSLNCV   64 (824)
T ss_pred             HHHHHHHHH-HhCCCCceEEEE-----CCCCCCHHHHHHHHHHHhCcc
Confidence            344333333 344556678999     999999999999999999753

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.0028  Score=54.89  Aligned_cols=42  Identities=26%  Similarity=0.475  Sum_probs=33.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh--HHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG--DMLRAAV   76 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~--~li~~~~   76 (251)
                      +++..|+++     ||||+|||-+|++++++-|..+++++  .++.++.
T Consensus       125 ~p~kGiLL~-----GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf  168 (386)
T KOG0737|consen  125 RPPKGILLY-----GPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF  168 (386)
T ss_pred             cCCccceec-----CCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence            356679999     99999999999999999998877663  4544444

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.36  E-value=0.0046  Score=49.17  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=22.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+..++|.     |++||||||+.+.|...+
T Consensus        24 ~g~~i~I~-----G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          24 ARKNILIS-----GGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHHhhc
Confidence            45678999     999999999999998765

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.36  E-value=0.0033  Score=54.44  Aligned_cols=29  Identities=28%  Similarity=0.441  Sum_probs=24.3

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .-.++-.++|+     ||+||||||+.+.+|=-.
T Consensus        25 ~i~~Gef~vll-----GPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          25 DIEDGEFVVLL-----GPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEcCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            34577789999     999999999999998543

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.36  E-value=0.015  Score=48.28  Aligned_cols=37  Identities=27%  Similarity=0.500  Sum_probs=28.7

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh---C--CceechhHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRA   74 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~   74 (251)
                      ..+++.     |++|+|||+++..++..+   |  +.++++.+++..
T Consensus       100 ~~~~l~-----G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~  141 (244)
T PRK07952        100 ASFIFS-----GKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA  141 (244)
T ss_pred             ceEEEE-----CCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence            357888     999999999999999988   3  345566666543

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.36  E-value=0.0035  Score=47.53  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=19.8

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+.+.     |+.+|||||+++.|.+.+
T Consensus         2 vv~Vv-----G~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVV-----GPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred             EEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            45556     999999999999998877

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=96.36  E-value=0.07  Score=48.47  Aligned_cols=55  Identities=13%  Similarity=0.068  Sum_probs=35.0

Q ss_pred             hhHHHHHHHHhhccCC-CCeEEEEEeecccCCCCCChhHHHHHHHHHh-----C--CceechhHHHHH
Q 025529           15 VDLMTELLRRMKCASK-PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----C--LCHLATGDMLRA   74 (251)
Q Consensus        15 ~~~~~~~~~~~~~~~~-~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~--~~~i~~~~li~~   74 (251)
                      ......++..+...+. ....++|.     |++|+|||++++.++..+     +  +.+++..+++..
T Consensus       130 n~~a~~~~~~~~~~~~~~~~~l~l~-----G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~  192 (450)
T PRK00149        130 NRLAHAAALAVAENPGKAYNPLFIY-----GGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND  192 (450)
T ss_pred             cHHHHHHHHHHHhCcCccCCeEEEE-----CCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence            3333344444433332 22347788     999999999999999886     2  346677666544

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.35  E-value=0.0044  Score=52.40  Aligned_cols=26  Identities=19%  Similarity=0.400  Sum_probs=22.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..++++     |++|+||||++..|+..+
T Consensus        71 ~~~vi~l~-----G~~G~GKTTt~akLA~~l   96 (272)
T TIGR00064        71 KPNVILFV-----GVNGVGKTTTIAKLANKL   96 (272)
T ss_pred             CCeEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence            45667777     999999999999998877

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.34  E-value=0.0026  Score=53.96  Aligned_cols=27  Identities=30%  Similarity=0.298  Sum_probs=22.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .....+.|+     |+|||||||+...|...+
T Consensus       102 ~~~~~v~l~-----G~pGsGKTTLl~~l~~~l  128 (290)
T PRK10463        102 RKQLVLNLV-----SSPGSGKTTLLTETLMRL  128 (290)
T ss_pred             cCCeEEEEE-----CCCCCCHHHHHHHHHHHh
Confidence            456667777     999999999998888775

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.34  E-value=0.0049  Score=49.10  Aligned_cols=48  Identities=23%  Similarity=0.385  Sum_probs=33.4

Q ss_pred             CcccccccCCCCchhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529            2 ASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +||-..+|+-.+     +.+...+...-.++-..++.     ||+||||||+.+.+|-
T Consensus         6 ~~~~sl~y~g~~-----~~~le~vsL~ia~ge~vv~l-----GpSGcGKTTLLnl~AG   53 (259)
T COG4525           6 VSHLSLSYEGKP-----RSALEDVSLTIASGELVVVL-----GPSGCGKTTLLNLIAG   53 (259)
T ss_pred             hhheEEecCCcc-----hhhhhccceeecCCCEEEEE-----cCCCccHHHHHHHHhc
Confidence            445455555544     44455555444567788899     9999999999998875

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=96.33  E-value=0.0026  Score=55.91  Aligned_cols=26  Identities=31%  Similarity=0.431  Sum_probs=22.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +.-.+++.     ||+||||||+.+.|...+
T Consensus       133 ~~glilI~-----GpTGSGKTTtL~aLl~~i  158 (358)
T TIGR02524       133 QEGIVFIT-----GATGSGKSTLLAAIIREL  158 (358)
T ss_pred             cCCEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            34567788     999999999999998876

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=96.33  E-value=0.014  Score=52.89  Aligned_cols=51  Identities=14%  Similarity=0.094  Sum_probs=34.4

Q ss_pred             HHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh-------CCceechhHHHHHH
Q 025529           20 ELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-------CLCHLATGDMLRAA   75 (251)
Q Consensus        20 ~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-------~~~~i~~~~li~~~   75 (251)
                      .....+...+.+...++|.     |++|+|||++++.++..+       .+.+++..+++...
T Consensus       118 ~~~~~~~~~~~~~n~l~ly-----G~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~  175 (440)
T PRK14088        118 HAALEVAKNPGRYNPLFIY-----GGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL  175 (440)
T ss_pred             HHHHHHHhCcCCCCeEEEE-----cCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence            3444443334333348888     999999999999998875       24566777765554

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.32  E-value=0.0074  Score=53.91  Aligned_cols=33  Identities=18%  Similarity=0.203  Sum_probs=27.4

Q ss_pred             ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      ..++-+.-++|.     ||||+||||+|..+++.+...
T Consensus        33 ~~~~~~ha~lf~-----Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955         33 RMGRVGHGYIFS-----GLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             HhCCcceeEEEE-----CCCCCCHHHHHHHHHHHhcCC
Confidence            344556678999     999999999999999999653

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=96.32  E-value=0.028  Score=48.71  Aligned_cols=30  Identities=30%  Similarity=0.465  Sum_probs=24.6

Q ss_pred             ecccCCCCCChhHHHHHHHHHh---CCceechh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY---CLCHLATG   69 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~---~~~~i~~~   69 (251)
                      ||++|-+|+||||++-.|.+.+   |++.++.|
T Consensus        53 vw~tglsgagkttis~ale~~l~~~gipcy~ld   85 (627)
T KOG4238|consen   53 VWLTGLSGAGKTTISFALEEYLVSHGIPCYSLD   85 (627)
T ss_pred             EEeeccCCCCcceeehHHHHHHHhcCCcccccC
Confidence            4666999999999999998876   77777664

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.31  E-value=0.0061  Score=49.47  Aligned_cols=23  Identities=35%  Similarity=0.592  Sum_probs=15.7

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..++.     ||||+||||+...+...+
T Consensus        19 ~~~i~-----GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQ-----GPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE------STTSSHHHHHHHHHHHH
T ss_pred             CEEEE-----CCCCCChHHHHHHHHHHh
Confidence            46666     999999997666665554

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.31  E-value=0.0044  Score=53.26  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=29.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      -|.+|+++     ||.|.|||-+|+.||+--|.||+-+
T Consensus        49 ~PKNILMI-----GpTGVGKTEIARRLAkl~~aPFiKV   81 (444)
T COG1220          49 TPKNILMI-----GPTGVGKTEIARRLAKLAGAPFIKV   81 (444)
T ss_pred             CccceEEE-----CCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            47789999     9999999999999999888888754

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.30  E-value=0.0032  Score=51.62  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=26.7

Q ss_pred             HHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           21 LLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        21 ~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +++.+.-.-.++-.+-|+     |++||||||+++.|+-..
T Consensus        22 ~l~~VS~~i~~Ge~lgiv-----GeSGsGKSTL~r~l~Gl~   57 (252)
T COG1124          22 ALNNVSLEIERGETLGIV-----GESGSGKSTLARLLAGLE   57 (252)
T ss_pred             hhcceeEEecCCCEEEEE-----cCCCCCHHHHHHHHhccc
Confidence            344443344577788888     999999999999997643

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.30  E-value=0.043  Score=49.42  Aligned_cols=34  Identities=24%  Similarity=0.449  Sum_probs=25.3

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhC-------CceechhH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-------LCHLATGD   70 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-------~~~i~~~~   70 (251)
                      +..++|.     ||+|+||||++..|+..+-       +.+++.|.
T Consensus       221 ~~~i~~v-----GptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~  261 (424)
T PRK05703        221 GGVVALV-----GPTGVGKTTTLAKLAARYALLYGKKKVALITLDT  261 (424)
T ss_pred             CcEEEEE-----CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence            4577888     9999999999888876542       34556654

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.30  E-value=0.0069  Score=55.66  Aligned_cols=32  Identities=22%  Similarity=0.322  Sum_probs=26.5

Q ss_pred             ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      ...+-+..++|.     ||||+||||+++.|++.+..
T Consensus        31 ~~~~l~ha~Lf~-----GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         31 RQGRLGHAYLFS-----GPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             HcCCCCeEEEEE-----CCCCCCHHHHHHHHHHHHhc
Confidence            344556678999     99999999999999999853

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.30  E-value=0.0052  Score=48.76  Aligned_cols=24  Identities=33%  Similarity=0.405  Sum_probs=18.7

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+|-+.     ||||||||++...+.+.+
T Consensus        14 ~~i~v~-----Gp~GSGKTaLie~~~~~L   37 (202)
T COG0378          14 LRIGVG-----GPPGSGKTALIEKTLRAL   37 (202)
T ss_pred             EEEEec-----CCCCcCHHHHHHHHHHHH
Confidence            456666     999999999877766555

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=96.29  E-value=0.0046  Score=53.75  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=27.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .+...++.     |+||+|||++++.+++.++.+++.+
T Consensus        42 ~~~~vll~-----G~PG~gKT~la~~lA~~l~~~~~~i   74 (329)
T COG0714          42 AGGHVLLE-----GPPGVGKTLLARALARALGLPFVRI   74 (329)
T ss_pred             cCCCEEEE-----CCCCccHHHHHHHHHHHhCCCeEEE
Confidence            34458899     9999999999999999998765544

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.29  E-value=0.004  Score=60.04  Aligned_cols=34  Identities=29%  Similarity=0.583  Sum_probs=28.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .++..++|.     ||||+||||+++.++..++.+++.+
T Consensus       210 ~~~~giLL~-----GppGtGKT~laraia~~~~~~~i~i  243 (733)
T TIGR01243       210 EPPKGVLLY-----GPPGTGKTLLAKAVANEAGAYFISI  243 (733)
T ss_pred             CCCceEEEE-----CCCCCChHHHHHHHHHHhCCeEEEE
Confidence            345668889     9999999999999999998776644

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.29  E-value=0.0043  Score=51.11  Aligned_cols=32  Identities=22%  Similarity=0.393  Sum_probs=25.8

Q ss_pred             hhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           25 MKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        25 ~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +...-.++-++.++     ||+||||||+-+.++--.
T Consensus        22 i~L~v~~GEfvsil-----GpSGcGKSTLLriiAGL~   53 (248)
T COG1116          22 INLSVEKGEFVAIL-----GPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             ceeEECCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            33444678889999     999999999999997644

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.28  E-value=0.011  Score=48.96  Aligned_cols=26  Identities=27%  Similarity=0.343  Sum_probs=21.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++..+++.     |+||||||++|..++-.
T Consensus        19 ~~gs~~lI~-----G~pGsGKT~la~~~l~~   44 (237)
T TIGR03877        19 PERNVVLLS-----GGPGTGKSIFSQQFLWN   44 (237)
T ss_pred             cCCeEEEEE-----cCCCCCHHHHHHHHHHH
Confidence            357778888     99999999999876543

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=96.28  E-value=0.0027  Score=56.09  Aligned_cols=27  Identities=22%  Similarity=0.240  Sum_probs=21.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      +|..|.|.     |.+||||||++..|.+++.
T Consensus         4 ~~~~i~i~-----G~~gsGKTTl~~~l~~~l~   30 (369)
T PRK14490          4 HPFEIAFC-----GYSGSGKTTLITALVRRLS   30 (369)
T ss_pred             CCEEEEEE-----eCCCCCHHHHHHHHHHHHh
Confidence            34455555     9999999999999998875

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=96.27  E-value=0.0048  Score=55.45  Aligned_cols=27  Identities=33%  Similarity=0.455  Sum_probs=23.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .+..+++.     ||||+|||++|+.|+..++
T Consensus       193 ~~~~iil~-----GppGtGKT~lA~~la~~l~  219 (459)
T PRK11331        193 IKKNIILQ-----GPPGVGKTFVARRLAYLLT  219 (459)
T ss_pred             cCCCEEEE-----CCCCCCHHHHHHHHHHHhc
Confidence            45578889     9999999999999999874

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=96.27  E-value=0.12  Score=46.36  Aligned_cols=57  Identities=16%  Similarity=0.110  Sum_probs=36.4

Q ss_pred             CchhHHHHHHHHhhccCCC-CeEEEEEeecccCCCCCChhHHHHHHHHHh-----C--CceechhHHHHH
Q 025529           13 PSVDLMTELLRRMKCASKP-DKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----C--LCHLATGDMLRA   74 (251)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~-~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~--~~~i~~~~li~~   74 (251)
                      +...+...+...+...+.. ...++|.     |++|+|||++++.++..+     +  +.+++..+++..
T Consensus       116 ~~n~~a~~~~~~~~~~~~~~~n~l~l~-----G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~  180 (405)
T TIGR00362       116 KSNRLAHAAALAVAENPGKAYNPLFIY-----GGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND  180 (405)
T ss_pred             CcHHHHHHHHHHHHhCcCccCCeEEEE-----CCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence            3344444455555433322 2347788     999999999999998765     2  446677666544

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.27  E-value=0.0072  Score=55.85  Aligned_cols=26  Identities=31%  Similarity=0.517  Sum_probs=22.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +.+.+.+.     ||||+||||+++.|++.+
T Consensus       102 ~~~IL~Lv-----GPpG~GKSsLa~~la~~l  127 (644)
T PRK15455        102 KKQILYLL-----GPVGGGKSSLAERLKSLM  127 (644)
T ss_pred             CCceEEEe-----cCCCCCchHHHHHHHHHH
Confidence            45567777     999999999999999877

>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE

Probab=96.26  E-value=0.17  Score=42.70  Aligned_cols=122  Identities=17%  Similarity=0.144  Sum_probs=61.1

Q ss_pred             CCCCCChhHHHHHHHHHhC--CceechhHHHHHHHHcC-CchHHHHHHH---HHcCCCcCHH---HH----------HHH
Q 025529           44 GPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAK-TPLGIKAKEA---MDKGELVSDD---LV----------VGI  104 (251)
Q Consensus        44 G~~gsGKST~a~~La~~~~--~~~i~~~~li~~~~~~~-~~~~~~i~~~---l~~~~~~~~~---~~----------~~l  104 (251)
                      |+.|.||||+++.|++...  -.++...+-|..+-.-. +..-+.+.+.   ..+|+....+   .+          ...
T Consensus         1 G~~GvGKTT~~~~l~~~~~~~~~vl~~pEPM~YWr~~f~~d~i~~Iy~~~~r~~~G~~s~~~as~~~~~~Q~~fatP~~~   80 (281)
T PF00693_consen    1 GAMGVGKTTTLKALAEALPAGDPVLYFPEPMAYWRTVFGTDVIKGIYEAQKRKDRGEISSEEASAIMASCQMKFATPYLA   80 (281)
T ss_dssp             SSTTSSHHHHHHHHHHCCTSSCCEEEE---HHHHHTCSSSSHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHccCCCCCeEEecccHHHHHHHhhHHHHHHHHHHHhHhhccCcCccHHHHHHHHHHHHhcchHHH
Confidence            8999999999999999883  44566655554443332 3333444322   2233322111   00          112


Q ss_pred             HHHHHcCC-----------CCCCceEEeCCCCCHHH-------------HHHHHHHHHhcC-C-CcCEEEEEecCHHHHH
Q 025529          105 IDEAMKKP-----------SCQKGFILDGFPRTEVQ-------------AQKLDEMLEKQG-K-KVDKVLNFAIDDAVLE  158 (251)
Q Consensus       105 l~~~l~~~-----------~~~~~~Iidg~~~~~~~-------------~~~l~~~~~~~~-~-~~~~vI~L~~~~e~~~  158 (251)
                      +...+...           .....+|+|.+|....-             ...|..++.... . .-+.+|.++++.++-.
T Consensus        81 ~~~~i~~~~~~~~~~~~~~~pd~~~ifDRHplAA~vcFPlary~~G~ls~~~li~lla~~p~~~pG~niVl~~L~~~E~~  160 (281)
T PF00693_consen   81 LHARISRLCGPEAVPPAGPSPDVWLIFDRHPLAATVCFPLARYLLGDLSFEDLISLLATFPPEPPGTNIVLMTLPEEEHL  160 (281)
T ss_dssp             HHHHHCCTSEEEEECTTSSS-SEEEEEES-THHHHTHHHHHHHHTTSS-HHHHHHHHTTS----TTEEEEEEE--HHHHH
T ss_pred             HHHHHHHhcCCccCCCCCCCCCeEEEEecchhHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHH
Confidence            23333321           11134678998754211             122223333332 1 2345778999999999


Q ss_pred             HHHhcCc
Q 025529          159 ERITGRW  165 (251)
Q Consensus       159 ~Rl~~r~  165 (251)
                      +|+..|.
T Consensus       161 rRl~~R~  167 (281)
T PF00693_consen  161 RRLKARG  167 (281)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHcC
Confidence            9999985

The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....

>PRK14974 cell division protein FtsY; Provisional

Probab=96.25  E-value=0.005  Score=53.57  Aligned_cols=26  Identities=19%  Similarity=0.290  Sum_probs=21.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +|..|+|.     |++|+||||++..|+..+
T Consensus       139 ~~~vi~~~-----G~~GvGKTTtiakLA~~l  164 (336)
T PRK14974        139 KPVVIVFV-----GVNGTGKTTTIAKLAYYL  164 (336)
T ss_pred             CCeEEEEE-----cCCCCCHHHHHHHHHHHH
Confidence            45677788     999999999888888766

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.24  E-value=0.0042  Score=54.13  Aligned_cols=26  Identities=35%  Similarity=0.500  Sum_probs=22.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++-.+.+.     ||+||||||+.+.+|--
T Consensus        29 ~~Gef~~lL-----GPSGcGKTTlLR~IAGf   54 (352)
T COG3842          29 KKGEFVTLL-----GPSGCGKTTLLRMIAGF   54 (352)
T ss_pred             cCCcEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            466788899     99999999999999853

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.24  E-value=0.0061  Score=50.91  Aligned_cols=42  Identities=17%  Similarity=0.216  Sum_probs=33.4

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAA   75 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~   75 (251)
                      ..+|..|++.     |..||||||++++|..++.     -.+|+.|...++.
T Consensus        16 ~~~p~~ilVv-----GMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v   62 (366)
T KOG1532|consen   16 IQRPVIILVV-----GMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV   62 (366)
T ss_pred             ccCCcEEEEE-----ecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence            4578889999     9999999999999988872     3567887666554

>PRK04328 hypothetical protein; Provisional

Probab=96.24  E-value=0.011  Score=49.30  Aligned_cols=26  Identities=27%  Similarity=0.343  Sum_probs=21.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++..+++.     |+||||||++|..+...
T Consensus        21 p~gs~ili~-----G~pGsGKT~l~~~fl~~   46 (249)
T PRK04328         21 PERNVVLLS-----GGPGTGKSIFSQQFLWN   46 (249)
T ss_pred             cCCcEEEEE-----cCCCCCHHHHHHHHHHH
Confidence            356778888     99999999999887654

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.0041  Score=54.30  Aligned_cols=31  Identities=23%  Similarity=0.527  Sum_probs=27.9

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      -++++     ||||+|||-+|++++.+.+..|+++.
T Consensus       247 gvLm~-----GPPGTGKTlLAKAvATEc~tTFFNVS  277 (491)
T KOG0738|consen  247 GVLMV-----GPPGTGKTLLAKAVATECGTTFFNVS  277 (491)
T ss_pred             eeeee-----CCCCCcHHHHHHHHHHhhcCeEEEec
Confidence            47778     99999999999999999998888775

>PRK09183 transposase/IS protein; Provisional

Probab=96.22  E-value=0.007  Score=50.84  Aligned_cols=38  Identities=24%  Similarity=0.449  Sum_probs=27.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh---C--CceechhHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDML   72 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li   72 (251)
                      ..+..++|+     ||+|+|||+++..|+...   |  +.+++..+++
T Consensus       100 ~~~~~v~l~-----Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~  142 (259)
T PRK09183        100 ERNENIVLL-----GPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL  142 (259)
T ss_pred             hcCCeEEEE-----eCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence            356678899     999999999999996553   3  3345555554

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=96.22  E-value=0.0029  Score=50.92  Aligned_cols=22  Identities=27%  Similarity=0.288  Sum_probs=18.9

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ..+++.     ||.||||||+.+.++-
T Consensus        26 ~~~~lt-----GpNg~GKSTllr~i~~   47 (199)
T cd03283          26 NGILIT-----GSNMSGKSTFLRTIGV   47 (199)
T ss_pred             cEEEEE-----CCCCCChHHHHHHHHH
Confidence            567777     9999999999999973

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.22  E-value=0.0091  Score=55.25  Aligned_cols=41  Identities=17%  Similarity=0.317  Sum_probs=29.5

Q ss_pred             HHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           17 LMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      +.+.+.+.+. ..+.+..++|.     ||+|+||||+|+.|++.++.
T Consensus        24 ~v~~L~~~i~-~~rl~ha~Lf~-----Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         24 ALNSLVHALE-TQKVHHAYLFT-----GTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             HHHHHHHHHH-cCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhCC
Confidence            3343443332 33445568889     99999999999999998864

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=96.20  E-value=0.0039  Score=50.15  Aligned_cols=25  Identities=36%  Similarity=0.670  Sum_probs=20.2

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +..++++     |+||+|||++++.|..-+
T Consensus        22 ~h~lLl~-----GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen   22 GHHLLLI-----GPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             C--EEEE-----S-CCCTHHHHHHHHHHCS
T ss_pred             CCCeEEE-----CCCCCCHHHHHHHHHHhC
Confidence            4579999     999999999999999876

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=96.20  E-value=0.003  Score=51.32  Aligned_cols=24  Identities=25%  Similarity=0.244  Sum_probs=20.7

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..+.++     |+.||||||+.+.|+-.+
T Consensus        24 e~~~i~-----G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          24 EVTGIF-----GASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             eeEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            667777     999999999999997654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.20  E-value=0.014  Score=48.09  Aligned_cols=24  Identities=17%  Similarity=0.259  Sum_probs=18.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ++..+++.     |++|+||||+|..++.
T Consensus        23 ~g~~~~i~-----G~~G~GKTtl~~~~~~   46 (230)
T PRK08533         23 AGSLILIE-----GDESTGKSILSQRLAY   46 (230)
T ss_pred             CCcEEEEE-----CCCCCCHHHHHHHHHH
Confidence            45578888     9999999999755443

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.19  E-value=0.0057  Score=50.54  Aligned_cols=26  Identities=31%  Similarity=0.367  Sum_probs=22.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+.+++++     |++||||||++..|-..+
T Consensus        12 ~~fr~viI-----G~sGSGKT~li~~lL~~~   37 (241)
T PF04665_consen   12 DPFRMVII-----GKSGSGKTTLIKSLLYYL   37 (241)
T ss_pred             CCceEEEE-----CCCCCCHHHHHHHHHHhh
Confidence            56689999     999999999888887655

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=96.19  E-value=0.092  Score=49.19  Aligned_cols=38  Identities=16%  Similarity=0.189  Sum_probs=29.3

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh-------CCceechhHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY-------CLCHLATGDMLRAAV   76 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~-------~~~~i~~~~li~~~~   76 (251)
                      .++|.     |++|+|||.|++.++...       .+.+++..+++....
T Consensus       316 pL~Ly-----G~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~  360 (617)
T PRK14086        316 PLFIY-----GESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI  360 (617)
T ss_pred             cEEEE-----CCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH
Confidence            37888     999999999999998865       346777777665543

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.19  E-value=0.0043  Score=45.06  Aligned_cols=21  Identities=33%  Similarity=0.569  Sum_probs=18.5

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +++++     |++|+||||+...|..
T Consensus         1 ~V~ii-----G~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    1 RVAII-----GRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEE-----ESTTSSHHHHHHHHHT
T ss_pred             CEEEE-----CCCCCCHHHHHHHHhc
Confidence            46777     9999999999999975

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd04163 Era Era subfamily

Probab=96.18  E-value=0.0049  Score=46.90  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=20.4

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+|+++     |++||||||+...|...
T Consensus         3 ~~~i~~~-----G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIV-----GRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            4578888     99999999999998643

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.18  E-value=0.0084  Score=58.04  Aligned_cols=32  Identities=13%  Similarity=0.231  Sum_probs=26.9

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      .++-+..++|.     ||+|+||||+++.|++.++..
T Consensus        34 ~~rl~HAyLFt-----GPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         34 QQRLHHAYLFT-----GTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             hCCCCeEEEEE-----CCCCCCHHHHHHHHHHhccCc
Confidence            34556667899     999999999999999999754

>PRK08939 primosomal protein DnaI; Reviewed

Probab=96.17  E-value=0.051  Score=46.78  Aligned_cols=105  Identities=21%  Similarity=0.210  Sum_probs=59.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh---CC--ceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CL--CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII  105 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~--~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll  105 (251)
                      .+..+.|.     |++|+|||.++..++..+   |.  .++.+.+++...           +..+..+      .+...+
T Consensus       155 ~~~gl~L~-----G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l-----------k~~~~~~------~~~~~l  212 (306)
T PRK08939        155 KVKGLYLY-----GDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL-----------KNSISDG------SVKEKI  212 (306)
T ss_pred             CCCeEEEE-----CCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH-----------HHHHhcC------cHHHHH
Confidence            45578899     999999999999999887   43  455776666542           2222211      111222


Q ss_pred             HHHHcCCCCCCceEEeCCCCC---HHHH-HHHHHHHHhc--CCCcCEEEEEecCHHHHHHHHh
Q 025529          106 DEAMKKPSCQKGFILDGFPRT---EVQA-QKLDEMLEKQ--GKKVDKVLNFAIDDAVLEERIT  162 (251)
Q Consensus       106 ~~~l~~~~~~~~~Iidg~~~~---~~~~-~~l~~~~~~~--~~~~~~vI~L~~~~e~~~~Rl~  162 (251)
                          .......-+|||.+...   .... ..|..++...  ...| .+|-=..+.+++.+++.
T Consensus       213 ----~~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~-ti~TSNl~~~el~~~~~  270 (306)
T PRK08939        213 ----DAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELP-TFFTSNFDFDELEHHLA  270 (306)
T ss_pred             ----HHhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCe-EEEECCCCHHHHHHHHh
Confidence                12223346788876432   1122 2333343221  2222 55556678888888775

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.015  Score=55.63  Aligned_cols=44  Identities=14%  Similarity=0.359  Sum_probs=35.3

Q ss_pred             CCCCe-EEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHHHH
Q 025529           29 SKPDK-RLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVA   77 (251)
Q Consensus        29 ~~~~~-~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~~~   77 (251)
                      |.+|. .++|.     ||.|+|||-+|+.||+.+.     +..|++++++.++.-
T Consensus       517 p~rPigsFlF~-----GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV  566 (786)
T COG0542         517 PNRPIGSFLFL-----GPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV  566 (786)
T ss_pred             CCCCceEEEee-----CCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence            44443 67778     9999999999999999983     677889888877643

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=96.17  E-value=0.006  Score=58.37  Aligned_cols=35  Identities=34%  Similarity=0.427  Sum_probs=28.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD   70 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~   70 (251)
                      +.+.++|.     ||||+||||+++.+++..+..++.++.
T Consensus        51 ~~~slLL~-----GPpGtGKTTLA~aIA~~~~~~f~~lna   85 (725)
T PRK13341         51 RVGSLILY-----GPPGVGKTTLARIIANHTRAHFSSLNA   85 (725)
T ss_pred             CCceEEEE-----CCCCCCHHHHHHHHHHHhcCcceeehh
Confidence            34467888     999999999999999988766655543

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.17  E-value=0.0097  Score=54.79  Aligned_cols=43  Identities=19%  Similarity=0.213  Sum_probs=31.9

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      ++.+.+.+.+. ..+-+..++|.     ||+|+||||+|+.|++.++..
T Consensus        23 ~v~~~L~~~~~-~~~l~ha~Lf~-----Gp~G~GKTt~A~~lAk~l~c~   65 (509)
T PRK14958         23 PVVRALSNALD-QQYLHHAYLFT-----GTRGVGKTTISRILAKCLNCE   65 (509)
T ss_pred             HHHHHHHHHHH-hCCCCeeEEEE-----CCCCCCHHHHHHHHHHHhcCC
Confidence            44454444443 34456678999     999999999999999999753

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.17  E-value=0.0036  Score=54.76  Aligned_cols=27  Identities=33%  Similarity=0.530  Sum_probs=22.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      +.-.+++.     ||+||||||+.+.|...+.
T Consensus       121 ~~g~ili~-----G~tGSGKTT~l~al~~~i~  147 (343)
T TIGR01420       121 PRGLILVT-----GPTGSGKSTTLASMIDYIN  147 (343)
T ss_pred             cCcEEEEE-----CCCCCCHHHHHHHHHHhhC
Confidence            34467888     9999999999999887663

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.16  E-value=0.0048  Score=49.77  Aligned_cols=32  Identities=28%  Similarity=0.376  Sum_probs=25.0

Q ss_pred             hhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           25 MKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        25 ~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +.+.-.+...-+++     ||+||||||+.+.|....
T Consensus        26 i~l~i~~~~VTAlI-----GPSGcGKST~LR~lNRmn   57 (253)
T COG1117          26 INLDIPKNKVTALI-----GPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             CceeccCCceEEEE-----CCCCcCHHHHHHHHHhhc
Confidence            33444566678899     999999999999997654

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=96.16  E-value=0.01  Score=50.28  Aligned_cols=31  Identities=19%  Similarity=0.361  Sum_probs=27.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCce
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH   65 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~   65 (251)
                      +..+..+|.     ||||+|||+.+.+++..+..+.
T Consensus        55 ~~lp~~LFy-----GPpGTGKTStalafar~L~~~~   85 (346)
T KOG0989|consen   55 RILPHYLFY-----GPPGTGKTSTALAFARALNCEQ   85 (346)
T ss_pred             cCCceEEee-----CCCCCcHhHHHHHHHHHhcCcc
Confidence            567789999     9999999999999999986543

>PRK06835 DNA replication protein DnaC; Validated

Probab=96.16  E-value=0.012  Score=51.15  Aligned_cols=38  Identities=21%  Similarity=0.388  Sum_probs=30.4

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh-----CCceechhHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRA   74 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~~~li~~   74 (251)
                      ...++|.     |++|+|||.++..++..+     .+.++++.+++..
T Consensus       183 ~~~Lll~-----G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~  225 (329)
T PRK06835        183 NENLLFY-----GNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI  225 (329)
T ss_pred             CCcEEEE-----CCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence            4678999     999999999999999987     3456677776654

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.15  E-value=0.004  Score=46.57  Aligned_cols=26  Identities=31%  Similarity=0.549  Sum_probs=22.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..++|+     |+.||||||+.+.|+..+
T Consensus        10 ~g~~~~i~-----G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   10 PGEIVAIV-----GPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TTSEEEEE-----ESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEE-----ccCCCccccceeeecccc
Confidence            55677888     999999999999997765

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03114 ArgK-like The function of this protein family is unkown

Probab=96.14  E-value=0.0036  Score=47.95  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=18.8

Q ss_pred             ecccCCCCCChhHHHHHHHHHh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++++|++||||||++..|+..+
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~   23 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITAL   23 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            3444999999999999998886

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=96.14  E-value=0.0039  Score=52.72  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.0

Q ss_pred             ecccCCCCCChhHHHHHHHHHh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~   61 (251)
                      |.|+|.+||||||++..|...+
T Consensus         4 i~i~G~~gSGKTTLi~~Li~~L   25 (274)
T PRK14493          4 LSIVGYKATGKTTLVERLVDRL   25 (274)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            3444999999999999999988

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=96.14  E-value=0.0045  Score=56.43  Aligned_cols=27  Identities=30%  Similarity=0.674  Sum_probs=22.9

Q ss_pred             CCCeEEE-EEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLI-LIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~-i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+|+.|+ ++     ||||+||||+.+.|..+|
T Consensus        66 ~PPPfIvavv-----GPpGtGKsTLirSlVrr~   93 (1077)
T COG5192          66 LPPPFIVAVV-----GPPGTGKSTLIRSLVRRF   93 (1077)
T ss_pred             CCCCeEEEee-----cCCCCChhHHHHHHHHHH
Confidence            3555555 88     999999999999999988

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=96.13  E-value=0.0078  Score=52.54  Aligned_cols=33  Identities=24%  Similarity=0.528  Sum_probs=25.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC--Cceech
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLAT   68 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~   68 (251)
                      .+..++|.     ||||+|||.+|-.+++.+|  +|+..+
T Consensus        49 aGr~iLia-----GppGtGKTAlA~~ia~eLG~~~PF~~i   83 (398)
T PF06068_consen   49 AGRAILIA-----GPPGTGKTALAMAIAKELGEDVPFVSI   83 (398)
T ss_dssp             TT-EEEEE-----E-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred             cCcEEEEe-----CCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence            46778899     9999999999999999996  555544

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=96.13  E-value=0.0069  Score=52.63  Aligned_cols=25  Identities=40%  Similarity=0.667  Sum_probs=21.8

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      +.++++     ||||+||||+|+.|++--.
T Consensus       163 pSmIlW-----GppG~GKTtlArlia~tsk  187 (554)
T KOG2028|consen  163 PSMILW-----GPPGTGKTTLARLIASTSK  187 (554)
T ss_pred             CceEEe-----cCCCCchHHHHHHHHhhcC
Confidence            458899     9999999999999988654

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.12  E-value=0.0094  Score=57.43  Aligned_cols=33  Identities=15%  Similarity=0.329  Sum_probs=26.8

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCcee--chhHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL--ATGDM   71 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i--~~~~l   71 (251)
                      .++|.     ||+|+|||++|+.|++.++..++  +++++
T Consensus       486 ~~lf~-----Gp~GvGKT~lA~~la~~l~~~~~~~d~se~  520 (731)
T TIGR02639       486 SFLFT-----GPTGVGKTELAKQLAEALGVHLERFDMSEY  520 (731)
T ss_pred             eEEEE-----CCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence            57888     99999999999999999976544  44444

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.12  E-value=0.0056  Score=49.57  Aligned_cols=27  Identities=33%  Similarity=0.559  Sum_probs=23.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.|+     |+.||||||+.+.|+-.+
T Consensus        25 ~~G~~~~i~-----G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          25 SAGEFVFLV-----GPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            466678888     999999999999998754

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=96.12  E-value=0.014  Score=49.59  Aligned_cols=40  Identities=30%  Similarity=0.560  Sum_probs=30.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee--chhHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRA   74 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i--~~~~li~~   74 (251)
                      ++|.-..++     ||||.|||-+|+.+++..|+.++  +.+.+..+
T Consensus       164 k~Pkg~ll~-----GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k  205 (388)
T KOG0651|consen  164 KPPKGLLLY-----GPPGTGKTLLARAVAATMGVNFLKVVSSALVDK  205 (388)
T ss_pred             CCCceeEEe-----CCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence            345556677     99999999999999999987655  44444433

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.10  E-value=0.0058  Score=49.64  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     |+.||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        27 TKGEMVFLV-----GHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            466778888     999999999999998754

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.10  E-value=0.0067  Score=51.61  Aligned_cols=26  Identities=27%  Similarity=0.523  Sum_probs=22.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..|+|.     ||.|+||||++..|+..+
T Consensus       193 ~~~vi~~v-----GptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       193 QGGVIALV-----GPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            35578888     999999999999998766

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.10  E-value=0.006  Score=48.52  Aligned_cols=28  Identities=25%  Similarity=0.356  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.+.|+     |+.||||||+.+.|+-.+
T Consensus        15 i~~Ge~~~i~-----G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        15 AERGEVLALL-----GANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EcCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            3466678888     999999999999997654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.08  E-value=0.0062  Score=49.31  Aligned_cols=28  Identities=29%  Similarity=0.443  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++..+.++     |+.||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~l~-----G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          23 IADGEFVVLL-----GPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EcCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            3567788899     999999999999998765

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.07  E-value=0.0061  Score=49.54  Aligned_cols=27  Identities=30%  Similarity=0.462  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     |+.||||||+.+.|+-.+
T Consensus        28 ~~G~~~~l~-----G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          28 EKGEFVAIV-----GPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             cCCCEEEEE-----cCCCCCHHHHHHHHhCCc
Confidence            466678888     999999999999998755

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.082  Score=43.93  Aligned_cols=43  Identities=16%  Similarity=0.431  Sum_probs=31.1

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee--chhHHHHHHHHcC
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRAAVAAK   79 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i--~~~~li~~~~~~~   79 (251)
                      |.-.++.     ||||+|||-+++..+.+....+|  ..++++.+.+..+
T Consensus       189 prgvlly-----gppg~gktml~kava~~t~a~firvvgsefvqkylgeg  233 (408)
T KOG0727|consen  189 PRGVLLY-----GPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEG  233 (408)
T ss_pred             CcceEEe-----CCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccC
Confidence            4446677     99999999999999998855444  4456666655443

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.04  E-value=0.013  Score=47.37  Aligned_cols=30  Identities=27%  Similarity=0.254  Sum_probs=25.0

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      ....++.+.|.     |++||||||+...+...++
T Consensus        18 ~~~~~~~i~~~-----G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        18 DKHGLVVLNFM-----SSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             hhcCcEEEEEE-----CCCCCCHHHHHHHHHHHHh
Confidence            34467788899     9999999999999988754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.04  E-value=0.012  Score=54.52  Aligned_cols=43  Identities=16%  Similarity=0.288  Sum_probs=31.2

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      ++.+.+.+.+. .++.+..++|.     ||+|+||||+|+.|++.++..
T Consensus        23 ~v~~~L~~~i~-~~~~~ha~Lf~-----Gp~G~GKTt~A~~lAk~l~c~   65 (527)
T PRK14969         23 HVVRALTNALE-QQRLHHAYLFT-----GTRGVGKTTLARILAKSLNCE   65 (527)
T ss_pred             HHHHHHHHHHH-cCCCCEEEEEE-----CCCCCCHHHHHHHHHHHhcCC
Confidence            34444444443 34456668899     999999999999999999653

>cd04155 Arl3 Arl3 subfamily

Probab=96.03  E-value=0.0067  Score=47.05  Aligned_cols=26  Identities=23%  Similarity=0.436  Sum_probs=22.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+++++     |++||||||+.+.|...
T Consensus        12 ~~~~~v~i~-----G~~g~GKStLl~~l~~~   37 (173)
T cd04155          12 SEEPRILIL-----GLDNAGKTTILKQLASE   37 (173)
T ss_pred             CCccEEEEE-----ccCCCCHHHHHHHHhcC
Confidence            346789999     99999999999999753

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=96.03  E-value=0.0041  Score=50.73  Aligned_cols=40  Identities=13%  Similarity=0.297  Sum_probs=24.3

Q ss_pred             HHHHHHHhccHHHHHHHhhCCc----EEEEcCCCChhHHHHHHH
Q 025529          207 SRLEAFHKQTEPVIDYYSKKGI----VAQLHAEKPPQEVTSEVQ  246 (251)
Q Consensus       207 ~r~~~y~~~~~~~~~~~~~~~~----~~~id~~~~~eev~~~i~  246 (251)
                      .++..|++..+.+....++.+.    ++.++...+.-.+...|.
T Consensus       206 p~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~ID  249 (290)
T KOG1533|consen  206 PRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTID  249 (290)
T ss_pred             hhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHH
Confidence            4677888888887777776553    234444444444555444

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.03  E-value=0.0068  Score=49.00  Aligned_cols=28  Identities=29%  Similarity=0.516  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.+.++     |+.||||||+.+.|+-.+
T Consensus        24 i~~G~~~~l~-----G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          24 IKKGEFVLIV-----GPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EcCCcEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            3466778888     999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.02  E-value=0.0061  Score=49.31  Aligned_cols=25  Identities=36%  Similarity=0.512  Sum_probs=21.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++ .++++     |+.||||||+.+.|+-.+
T Consensus        25 ~g-~~~i~-----G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          25 PG-MYGLL-----GPNGAGKTTLMRILATLT   49 (211)
T ss_pred             CC-cEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            46 78888     999999999999998654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=96.02  E-value=0.0046  Score=54.56  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.0

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+++.     ||+||||||+.+.|...+
T Consensus       151 lilI~-----G~TGSGKTT~l~al~~~i  173 (372)
T TIGR02525       151 LGLIC-----GETGSGKSTLAASIYQHC  173 (372)
T ss_pred             EEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            46677     999999999999998776

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=96.01  E-value=0.018  Score=48.14  Aligned_cols=39  Identities=31%  Similarity=0.571  Sum_probs=31.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh---C--CceechhHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRA   74 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~   74 (251)
                      .+..++|.     |+||+|||.++.+++.++   |  +.++.+.+++.+
T Consensus       104 ~~~nl~l~-----G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~  147 (254)
T COG1484         104 RGENLVLL-----GPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK  147 (254)
T ss_pred             cCCcEEEE-----CCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            67789999     999999999999988776   3  346677777655

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.01  E-value=0.0068  Score=49.40  Aligned_cols=27  Identities=26%  Similarity=0.302  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.++|+     |+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          24 PEGEIVALL-----GRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             cCCeEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            567788888     999999999999997654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.01  E-value=0.0067  Score=47.91  Aligned_cols=27  Identities=30%  Similarity=0.559  Sum_probs=23.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..+.++     |+.||||||+.+.|+-.+
T Consensus        23 ~~Ge~~~l~-----G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          23 KEGEVIGIV-----GPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCCEEEEE-----CCCCChHHHHHHHHHcCC
Confidence            456688888     999999999999998654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.01  E-value=0.0062  Score=50.14  Aligned_cols=28  Identities=36%  Similarity=0.475  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.++++     |+.||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~l~-----G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          23 VRPGEIHGLI-----GPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             ecCCcEEEEE-----CCCCCCHHHHHHHHcCCC
Confidence            3467788888     999999999999997654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=95.99  E-value=0.0072  Score=48.86  Aligned_cols=27  Identities=30%  Similarity=0.426  Sum_probs=23.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     |+.||||||+.+.|+-.+
T Consensus        24 ~~G~~~~i~-----G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          24 EKGEIFGLL-----GPNGAGKTTTIRMILGII   50 (210)
T ss_pred             cCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            466678888     999999999999998654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.98  E-value=0.0073  Score=48.28  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=23.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     |+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~l~-----G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         24 LPSAITYIK-----GANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             cCCcEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            456678888     999999999999998764

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=95.98  E-value=0.0072  Score=49.19  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=24.0

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .-.++-.++|+     |+.||||||+.+.|+-.+
T Consensus        24 ~i~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          24 NVYKGEIFGLL-----GHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             EEcCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            33566678888     999999999999998654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=95.98  E-value=0.0072  Score=48.97  Aligned_cols=28  Identities=29%  Similarity=0.472  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.+.++     |+.||||||+.+.|+-.+
T Consensus        25 i~~G~~~~l~-----G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        25 IRKGEFLFLT-----GPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EcCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            3466788888     999999999999997654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.97  E-value=0.0072  Score=49.78  Aligned_cols=27  Identities=37%  Similarity=0.551  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     |+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~l~-----G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          24 RRGEILAII-----GPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            466678888     999999999999998654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.97  E-value=0.0073  Score=49.19  Aligned_cols=28  Identities=21%  Similarity=0.304  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++..+.|+     |+.||||||+.+.|+-.+
T Consensus        28 i~~G~~~~i~-----G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        28 IGKGEIVAIV-----GSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EcCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            3567778888     999999999999998654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=95.97  E-value=0.0014  Score=57.47  Aligned_cols=30  Identities=27%  Similarity=0.389  Sum_probs=24.6

Q ss_pred             ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..-.++-.++|+     ||+||||||+.+.|+-.+
T Consensus        27 l~i~~Ge~~~ll-----GpsGsGKSTLLr~IaGl~   56 (351)
T PRK11432         27 LTIKQGTMVTLL-----GPSGCGKTTVLRLVAGLE   56 (351)
T ss_pred             EEEcCCCEEEEE-----CCCCCcHHHHHHHHHCCC
Confidence            333567788999     999999999999998654

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=95.97  E-value=0.018  Score=47.43  Aligned_cols=26  Identities=19%  Similarity=0.204  Sum_probs=21.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++..+++.     |+|||||||++..++..
T Consensus        23 ~~g~~~~i~-----G~~GsGKt~l~~~~~~~   48 (234)
T PRK06067         23 PFPSLILIE-----GDHGTGKSVLSQQFVYG   48 (234)
T ss_pred             cCCcEEEEE-----CCCCCChHHHHHHHHHH
Confidence            356677888     99999999999998654

>PRK13768 GTPase; Provisional

Probab=95.97  E-value=0.0076  Score=50.42  Aligned_cols=20  Identities=35%  Similarity=0.494  Sum_probs=17.5

Q ss_pred             ccCCCCCChhHHHHHHHHHh
Q 025529           42 LAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~~   61 (251)
                      |+|++||||||++..++..+
T Consensus         7 v~G~~G~GKTt~~~~~~~~l   26 (253)
T PRK13768          7 FLGTAGSGKTTLTKALSDWL   26 (253)
T ss_pred             EECCCCccHHHHHHHHHHHH
Confidence            33999999999999998777

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=95.96  E-value=0.0051  Score=51.79  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++|.     |++||||||+.+.+...+
T Consensus        82 lilis-----G~tGSGKTT~l~all~~i  104 (264)
T cd01129          82 IILVT-----GPTGSGKTTTLYSALSEL  104 (264)
T ss_pred             EEEEE-----CCCCCcHHHHHHHHHhhh
Confidence            57788     999999999999887665

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=95.96  E-value=0.015  Score=54.27  Aligned_cols=30  Identities=27%  Similarity=0.379  Sum_probs=25.6

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      ++.+..++|.     ||+|+||||+|+.|++.+..
T Consensus        35 ~rl~hA~Lf~-----GP~GvGKTTlA~~lAk~L~C   64 (605)
T PRK05896         35 NKLTHAYIFS-----GPRGIGKTSIAKIFAKAINC   64 (605)
T ss_pred             CCCCceEEEE-----CCCCCCHHHHHHHHHHHhcC
Confidence            4445668899     99999999999999999854

>PRK06851 hypothetical protein; Provisional

Probab=95.95  E-value=0.0052  Score=53.97  Aligned_cols=25  Identities=40%  Similarity=0.699  Sum_probs=20.9

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ...+++.     |+||+||||+.+.+.+.+
T Consensus        30 ~~~~il~-----G~pGtGKStl~~~i~~~~   54 (367)
T PRK06851         30 NRIFILK-----GGPGTGKSTLMKKIGEEF   54 (367)
T ss_pred             ceEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            3456777     999999999999988777

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.95  E-value=0.0081  Score=47.33  Aligned_cols=27  Identities=33%  Similarity=0.455  Sum_probs=22.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     |+.||||||+.+.|+-.+
T Consensus        24 ~~G~~~~i~-----G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          24 EAGEIVALL-----GPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            466678888     999999999999997654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.95  E-value=0.0077  Score=48.78  Aligned_cols=28  Identities=36%  Similarity=0.534  Sum_probs=23.4

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.+.++     |+.||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          23 VEPGEFLALL-----GPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             EcCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            3466778888     999999999999998654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.95  E-value=0.0077  Score=48.72  Aligned_cols=27  Identities=37%  Similarity=0.486  Sum_probs=23.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     |+.||||||+.+.|+-.+
T Consensus        24 ~~G~~~~l~-----G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          24 KKGEVVVII-----GPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            466778888     999999999999998654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.94  E-value=0.0078  Score=49.05  Aligned_cols=27  Identities=26%  Similarity=0.463  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.++|+     |+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~i~-----G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          24 RRGEIFGLL-----GPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            466778888     999999999999998654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=95.94  E-value=0.0082  Score=46.78  Aligned_cols=29  Identities=31%  Similarity=0.637  Sum_probs=24.2

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .-.++-.+++.     |+.||||||+.+.|+-.+
T Consensus        23 ~i~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          23 EIKPGDRLLIT-----GPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             EECCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            33567788888     999999999999997654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.94  E-value=0.0081  Score=52.95  Aligned_cols=26  Identities=27%  Similarity=0.470  Sum_probs=22.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..++|+     ||+|+||||++..|+..+
T Consensus       136 ~g~ii~lv-----GptGvGKTTtiakLA~~~  161 (374)
T PRK14722        136 RGGVFALM-----GPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             CCcEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            46678888     999999999999998764

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=95.93  E-value=0.0053  Score=50.42  Aligned_cols=22  Identities=27%  Similarity=0.200  Sum_probs=19.2

Q ss_pred             ecccCCCCCChhHHHHHHHHHh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++|+|++||||||++..|+.++
T Consensus         4 i~ivG~~gsGKTtl~~~l~~~L   25 (229)
T PRK14494          4 IGVIGFKDSGKTTLIEKILKNL   25 (229)
T ss_pred             EEEECCCCChHHHHHHHHHHHH
Confidence            4455999999999999999888

>PRK10867 signal recognition particle protein; Provisional

Probab=95.93  E-value=0.009  Score=53.74  Aligned_cols=26  Identities=23%  Similarity=0.473  Sum_probs=21.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +|..|++.     |++||||||++..||..+
T Consensus        99 ~p~vI~~v-----G~~GsGKTTtaakLA~~l  124 (433)
T PRK10867         99 PPTVIMMV-----GLQGAGKTTTAGKLAKYL  124 (433)
T ss_pred             CCEEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence            35667777     999999999888887755

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.93  E-value=0.0077  Score=48.53  Aligned_cols=27  Identities=26%  Similarity=0.352  Sum_probs=23.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     |+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          24 YAGEIIALT-----GKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            466678888     999999999999997654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.93  E-value=0.0077  Score=48.47  Aligned_cols=27  Identities=37%  Similarity=0.359  Sum_probs=22.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.+.     |+.||||||+.+.|+-.+
T Consensus        22 ~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        22 EKGKMYAII-----GESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             eCCcEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            456678888     999999999999998654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK13531 regulatory ATPase RavA; Provisional

Probab=95.93  E-value=0.0084  Score=54.39  Aligned_cols=28  Identities=25%  Similarity=0.459  Sum_probs=23.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      ..+..++++     ||||+|||++|+.|++..+
T Consensus        37 lag~hVLL~-----GpPGTGKT~LAraLa~~~~   64 (498)
T PRK13531         37 LSGESVFLL-----GPPGIAKSLIARRLKFAFQ   64 (498)
T ss_pred             ccCCCEEEE-----CCCChhHHHHHHHHHHHhc
Confidence            345568999     9999999999999999764

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.91  E-value=0.0084  Score=47.20  Aligned_cols=28  Identities=29%  Similarity=0.547  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.+.+.     |+.||||||+.+.|+-.+
T Consensus        25 i~~Ge~~~i~-----G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          25 LKQGEKIALL-----GRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             EcCCCEEEEE-----CCCCCCHHHHHHHHhccC
Confidence            3466678888     999999999999998764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=95.91  E-value=0.0067  Score=49.61  Aligned_cols=27  Identities=37%  Similarity=0.562  Sum_probs=23.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..-+.++|.     ||||+||||-+..||..+
T Consensus        46 gnmP~liis-----GpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991|consen   46 GNMPNLIIS-----GPPGTGKTTSILCLAREL   72 (333)
T ss_pred             CCCCceEee-----CCCCCchhhHHHHHHHHH
Confidence            445678899     999999999999999887

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=95.91  E-value=0.0048  Score=48.72  Aligned_cols=19  Identities=32%  Similarity=0.296  Sum_probs=16.5

Q ss_pred             cccCCCCCChhHHHHHHHH
Q 025529           41 WLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~   59 (251)
                      .|+|..||||||+.+.|.+
T Consensus         4 ii~GfLGsGKTTli~~ll~   22 (178)
T PF02492_consen    4 IITGFLGSGKTTLINHLLK   22 (178)
T ss_dssp             EEEESTTSSHHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHHH
Confidence            4459999999999999985

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.90  E-value=0.0079  Score=49.33  Aligned_cols=28  Identities=18%  Similarity=0.177  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.+.|+     |+.||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~l~-----G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        23 VPKGEVTCVL-----GRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             ECCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            3567788899     999999999999998655

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.90  E-value=0.0082  Score=49.35  Aligned_cols=27  Identities=26%  Similarity=0.279  Sum_probs=23.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     |+.||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~l~-----G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          29 PKGEIFGII-----GRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            567788888     999999999999998765

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=95.90  E-value=0.01  Score=51.46  Aligned_cols=34  Identities=26%  Similarity=0.502  Sum_probs=27.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC--Cceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~   68 (251)
                      ..+.-+++.     ||||+|||.+|-.+++.+|  .||.+.
T Consensus        63 ~aGrgiLi~-----GppgTGKTAlA~gIa~eLG~dvPF~~i   98 (450)
T COG1224          63 MAGRGILIV-----GPPGTGKTALAMGIARELGEDVPFVAI   98 (450)
T ss_pred             ccccEEEEE-----CCCCCcHHHHHHHHHHHhCCCCCceee
Confidence            346678888     9999999999999999996  454433

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=95.90  E-value=0.0081  Score=49.59  Aligned_cols=28  Identities=32%  Similarity=0.510  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.+.|+     |+.||||||+.+.|+-.+
T Consensus        24 i~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          24 INPGEFVALI-----GPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EcCCCEEEEE-----CCCCCCHHHHHHHHhCCc
Confidence            3567778888     999999999999998654

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.89  E-value=0.0087  Score=46.91  Aligned_cols=28  Identities=32%  Similarity=0.385  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.++++     |+.||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~i~-----G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          23 VEKGEIYGLL-----GPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             EcCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            3466788888     999999999999997654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.89  E-value=0.0075  Score=48.86  Aligned_cols=27  Identities=37%  Similarity=0.566  Sum_probs=23.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     |+.||||||+.+.|+-.+
T Consensus        23 ~~Ge~~~l~-----G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          23 KPGEFLAIV-----GPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHcCCC
Confidence            466678888     999999999999997654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=95.89  E-value=0.009  Score=46.81  Aligned_cols=28  Identities=39%  Similarity=0.653  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++..+++.     |+.||||||+.+.|+-.+
T Consensus        25 i~~Ge~~~i~-----G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          25 IEPGESLAII-----GPSGSGKSTLARLILGLL   52 (173)
T ss_pred             ECCCCEEEEE-----CCCCCCHHHHHHHHHhcc
Confidence            3566788888     999999999999998754

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=95.89  E-value=0.0082  Score=49.64  Aligned_cols=30  Identities=30%  Similarity=0.452  Sum_probs=24.4

Q ss_pred             ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..-.++-.++|+     |+.||||||+.+.|+-.+
T Consensus        23 ~~i~~Ge~~~l~-----G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        23 LNINPGEFVAII-----GPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             EEEcCCCEEEEE-----CCCCCCHHHHHHHHhCCc
Confidence            333567788888     999999999999998654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.88  E-value=0.0083  Score=49.24  Aligned_cols=27  Identities=33%  Similarity=0.412  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     |+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~l~-----G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          24 KQGEIVGLL-----GPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             cCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            466788888     999999999999998654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.88  E-value=0.0083  Score=47.42  Aligned_cols=28  Identities=11%  Similarity=0.125  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.+.++     |+.||||||+.+.|+-.+
T Consensus        23 i~~G~~~~i~-----G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          23 VRAGEIVGIA-----GLVGNGQTELAEALFGLR   50 (182)
T ss_pred             EcCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            3566778888     999999999999998765

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.88  E-value=0.0088  Score=46.46  Aligned_cols=28  Identities=29%  Similarity=0.456  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.+.+.     |+.||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~l~-----G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          23 VRRGEVHALL-----GENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EeCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            3567788888     999999999999997654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=95.88  E-value=0.0084  Score=49.54  Aligned_cols=27  Identities=33%  Similarity=0.466  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.|+     |+.||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          26 PSGELVALL-----GPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            466778888     999999999999998754

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=95.87  E-value=0.01  Score=53.27  Aligned_cols=26  Identities=27%  Similarity=0.468  Sum_probs=22.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +|..|.+.     |++||||||++..||..+
T Consensus        99 ~~~vi~lv-----G~~GvGKTTtaaKLA~~l  124 (429)
T TIGR01425        99 KQNVIMFV-----GLQGSGKTTTCTKLAYYY  124 (429)
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            35677788     999999999999999877

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.87  E-value=0.0033  Score=52.00  Aligned_cols=33  Identities=33%  Similarity=0.493  Sum_probs=25.5

Q ss_pred             HhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           24 RMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        24 ~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .....-..+..++++     ||+||||||+.+.+..-.
T Consensus        19 ~v~l~I~~gef~vli-----GpSGsGKTTtLkMINrLi   51 (309)
T COG1125          19 DVNLTIEEGEFLVLI-----GPSGSGKTTTLKMINRLI   51 (309)
T ss_pred             eeeEEecCCeEEEEE-----CCCCCcHHHHHHHHhccc
Confidence            333334578889999     999999999999886544

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=95.87  E-value=0.0087  Score=48.99  Aligned_cols=27  Identities=30%  Similarity=0.432  Sum_probs=23.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     |+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~i~-----G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          24 PKGEITALI-----GPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHHhhc
Confidence            466778888     999999999999998765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.86  E-value=0.0085  Score=49.29  Aligned_cols=27  Identities=22%  Similarity=0.359  Sum_probs=22.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     |+.||||||+.+.|+-.+
T Consensus        33 ~~Ge~~~l~-----G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         33 GEGEMMAIV-----GSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             cCCcEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            456677888     999999999999998654

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=95.86  E-value=0.0087  Score=49.92  Aligned_cols=28  Identities=25%  Similarity=0.297  Sum_probs=24.2

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++....|+     ||.||||||+.+.|+.-+
T Consensus        25 i~~G~i~~ii-----GpNG~GKSTLLk~l~g~l   52 (258)
T COG1120          25 IPKGEITGIL-----GPNGSGKSTLLKCLAGLL   52 (258)
T ss_pred             ecCCcEEEEE-----CCCCCCHHHHHHHHhccC
Confidence            3467788888     999999999999998866

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=95.86  E-value=0.0083  Score=49.05  Aligned_cols=29  Identities=34%  Similarity=0.399  Sum_probs=24.3

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .-.++-.+.++     |+.||||||+.+.|+-.+
T Consensus        27 ~i~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          27 SIKKGETLGLV-----GESGSGKSTLARAILGLL   55 (228)
T ss_pred             EEcCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            33567788888     999999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.86  E-value=0.0082  Score=48.93  Aligned_cols=27  Identities=33%  Similarity=0.476  Sum_probs=22.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.|+     |+.||||||+.+.|+-.+
T Consensus        28 ~~G~~~~i~-----G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          28 EEGEFVALV-----GPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             eCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            456678888     999999999999997654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.86  E-value=0.017  Score=54.29  Aligned_cols=42  Identities=19%  Similarity=0.317  Sum_probs=31.2

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      ++.+.+.+.+ ...+-+..++|.     |++|+||||+++.|++.++.
T Consensus        23 ~vv~~L~~~l-~~~rl~ha~Lf~-----Gp~GvGKTtlAr~lAk~LnC   64 (618)
T PRK14951         23 HVVQALTNAL-TQQRLHHAYLFT-----GTRGVGKTTVSRILAKSLNC   64 (618)
T ss_pred             HHHHHHHHHH-HcCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhcC
Confidence            3444344433 344556678999     99999999999999999875

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=95.86  E-value=0.78  Score=38.06  Aligned_cols=103  Identities=17%  Similarity=0.276  Sum_probs=60.5

Q ss_pred             ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHH
Q 025529           27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG  103 (251)
Q Consensus        27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~  103 (251)
                      ....+...+++.     |..|+|||++.+.+..+|   |+-.|.+..   .          .+.            .+..
T Consensus        47 l~G~pannvLL~-----G~rGtGKSSlVkall~~y~~~GLRlIev~k---~----------~L~------------~l~~   96 (249)
T PF05673_consen   47 LQGLPANNVLLW-----GARGTGKSSLVKALLNEYADQGLRLIEVSK---E----------DLG------------DLPE   96 (249)
T ss_pred             HcCCCCcceEEe-----cCCCCCHHHHHHHHHHHHhhcCceEEEECH---H----------Hhc------------cHHH
Confidence            445678889999     999999999999999988   444444421   0          000            0112


Q ss_pred             HHHHHHcCCCCCCceE--EeC--CCCCHHHHHHHHHHHHhc--CCCcCEEEEEecCHHHHHHHHh
Q 025529          104 IIDEAMKKPSCQKGFI--LDG--FPRTEVQAQKLDEMLEKQ--GKKVDKVLNFAIDDAVLEERIT  162 (251)
Q Consensus       104 ll~~~l~~~~~~~~~I--idg--~~~~~~~~~~l~~~~~~~--~~~~~~vI~L~~~~e~~~~Rl~  162 (251)
                      ++ ..+...+  ..||  +|.  |.........|..++.+.  ..+-.++||.+.+---+++...
T Consensus        97 l~-~~l~~~~--~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~  158 (249)
T PF05673_consen   97 LL-DLLRDRP--YKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESF  158 (249)
T ss_pred             HH-HHHhcCC--CCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhh
Confidence            22 2222222  2344  464  444456677787777542  1234577888877765555543

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=95.85  E-value=0.0088  Score=49.33  Aligned_cols=27  Identities=33%  Similarity=0.695  Sum_probs=23.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.|+     |+.||||||+.+.|+-.+
T Consensus        25 ~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        25 RPGEFVALL-----GPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhCCc
Confidence            467788888     999999999999998654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=95.85  E-value=0.0082  Score=50.02  Aligned_cols=28  Identities=29%  Similarity=0.389  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.++|+     |++||||||+.+.|+-.+
T Consensus        26 i~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        26 LYPGEVLGIV-----GESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             EeCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            3567788888     999999999999998765

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.85  E-value=0.0086  Score=47.80  Aligned_cols=25  Identities=32%  Similarity=0.531  Sum_probs=22.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .++..+.++     |+.||||||+.+.|+-
T Consensus        31 ~~Ge~~~l~-----G~nGsGKSTLl~~l~G   55 (192)
T cd03232          31 KPGTLTALM-----GESGAGKTTLLDVLAG   55 (192)
T ss_pred             eCCcEEEEE-----CCCCCCHHHHHHHHhC
Confidence            466778888     9999999999999985

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=95.85  E-value=0.017  Score=54.62  Aligned_cols=43  Identities=19%  Similarity=0.299  Sum_probs=31.7

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      ++.+.+.+.+. .++.+..++|.     |++|+||||+++.|++.++..
T Consensus        23 ~vv~~L~~ai~-~~rl~Ha~Lf~-----GP~GvGKTTlAriLAk~LnC~   65 (709)
T PRK08691         23 HVVKALQNALD-EGRLHHAYLLT-----GTRGVGKTTIARILAKSLNCE   65 (709)
T ss_pred             HHHHHHHHHHH-cCCCCeEEEEE-----CCCCCcHHHHHHHHHHHhccc
Confidence            34444444443 34456678999     999999999999999998654

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=95.84  E-value=0.01  Score=47.04  Aligned_cols=27  Identities=33%  Similarity=0.489  Sum_probs=21.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-...+.     ||+||||||+.+.|....
T Consensus        26 ~~Gef~fl~-----GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          26 PKGEFVFLT-----GPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             cCceEEEEE-----CCCCCCHHHHHHHHHhhh
Confidence            455556666     999999999999997665

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=95.84  E-value=0.0078  Score=57.09  Aligned_cols=33  Identities=27%  Similarity=0.513  Sum_probs=28.3

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      +..+++.     ||||+||||+++.++...+.+++..+
T Consensus       185 ~~gill~-----G~~G~GKt~~~~~~a~~~~~~f~~is  217 (644)
T PRK10733        185 PKGVLMV-----GPPGTGKTLLAKAIAGEAKVPFFTIS  217 (644)
T ss_pred             CCcEEEE-----CCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence            4458888     99999999999999999998877553

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=95.84  E-value=0.0091  Score=48.90  Aligned_cols=28  Identities=25%  Similarity=0.421  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.++|+     |+.||||||+.+.|+-.+
T Consensus        30 i~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         30 LRAGEFKLIT-----GPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             EcCCCEEEEE-----CCCCCCHHHHHHHHhccc
Confidence            3566778888     999999999999997643

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=95.84  E-value=0.0082  Score=52.43  Aligned_cols=29  Identities=31%  Similarity=0.384  Sum_probs=24.7

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .+.+.+|++.     |++||||||+.+.|...+.
T Consensus       159 v~~~~nilI~-----G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        159 VVGRLTMLLC-----GPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             HHcCCeEEEE-----CCCCccHHHHHHHHHcccC
Confidence            3456689999     9999999999999988763

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=95.84  E-value=0.0097  Score=46.54  Aligned_cols=30  Identities=33%  Similarity=0.656  Sum_probs=24.8

Q ss_pred             ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..-.++-.+.+.     |+.||||||+.+.|+-.+
T Consensus        23 ~~i~~G~~~~l~-----G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          23 LTIKPGEKVAIV-----GPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             EEEcCCCEEEEE-----CCCCCCHHHHHHHHHcCC
Confidence            334567788888     999999999999998765

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=95.84  E-value=0.019  Score=51.20  Aligned_cols=29  Identities=21%  Similarity=0.421  Sum_probs=25.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      .+.-++|.     ||+|+||||+|..|++.+...
T Consensus        35 l~ha~Lf~-----Gp~G~GKt~lA~~lA~~l~c~   63 (394)
T PRK07940         35 MTHAWLFT-----GPPGSGRSVAARAFAAALQCT   63 (394)
T ss_pred             CCeEEEEE-----CCCCCcHHHHHHHHHHHhCCC
Confidence            46678999     999999999999999988543

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=95.82  E-value=0.015  Score=49.13  Aligned_cols=38  Identities=18%  Similarity=0.251  Sum_probs=28.1

Q ss_pred             HHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           18 MTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        18 ~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ++++.............++|.     |++|+||||+|..++..
T Consensus         5 ~~~l~~~L~~~~~~~~~v~I~-----G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen    5 IEKLKDWLLDNSNEVRVVAIV-----GMGGIGKTTLARQVARD   42 (287)
T ss_dssp             HHHHHHHHHTTTTSSEEEEEE-----ESTTSSHHHHHHHHHCH
T ss_pred             HHHHHHHhhCCCCCeEEEEEE-----cCCcCCcceeeeecccc
Confidence            334444444333567778888     99999999999999877

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=95.82  E-value=0.0092  Score=48.83  Aligned_cols=26  Identities=35%  Similarity=0.387  Sum_probs=22.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..+.++     |++||||||+.+.|+-.+
T Consensus         5 ~Ge~~~l~-----G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         5 KGELLGLL-----GPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             CCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            45677888     999999999999998765

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.81  E-value=0.0096  Score=46.97  Aligned_cols=25  Identities=24%  Similarity=0.183  Sum_probs=21.4

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIK   58 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La   58 (251)
                      -.++.++++.     ||.||||||+.+.+.
T Consensus        18 i~~G~~~~l~-----G~nG~GKSTLl~~il   42 (176)
T cd03238          18 IPLNVLVVVT-----GVSGSGKSTLVNEGL   42 (176)
T ss_pred             EcCCCEEEEE-----CCCCCCHHHHHHHHh
Confidence            3566788888     999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=95.80  E-value=0.0091  Score=49.34  Aligned_cols=26  Identities=38%  Similarity=0.544  Sum_probs=22.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++-.+.|+     |+.||||||+.+.|+-.
T Consensus        24 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        24 KKGEIHAIM-----GPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            466788888     99999999999999865

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.80  E-value=0.0093  Score=49.38  Aligned_cols=27  Identities=26%  Similarity=0.458  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     |+.||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         27 EGGAIYTIV-----GPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            466678888     999999999999998754

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=95.80  E-value=0.0071  Score=44.29  Aligned_cols=21  Identities=24%  Similarity=0.362  Sum_probs=18.0

Q ss_pred             cccCCCCCChhHHHHHHHHHh
Q 025529           41 WLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~~~   61 (251)
                      +++|.+|+||||++..|+..+
T Consensus         3 ~~~GkgG~GKTt~a~~la~~l   23 (116)
T cd02034           3 AITGKGGVGKTTIAALLARYL   23 (116)
T ss_pred             EEECCCCCCHHHHHHHHHHHH
Confidence            344999999999999998876

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>TIGR00959 ffh signal recognition particle protein

Probab=95.80  E-value=0.011  Score=53.12  Aligned_cols=26  Identities=27%  Similarity=0.436  Sum_probs=21.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +|..+++.     |++||||||++..||..+
T Consensus        98 ~p~vi~~v-----G~~GsGKTTtaakLA~~l  123 (428)
T TIGR00959        98 PPTVILMV-----GLQGSGKTTTCGKLAYYL  123 (428)
T ss_pred             CCEEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence            35567777     999999999988888764

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=95.80  E-value=0.0095  Score=49.53  Aligned_cols=27  Identities=41%  Similarity=0.521  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.|+     |+.||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         27 KPGEVVAII-----GPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            467778888     999999999999998654

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=95.79  E-value=0.0095  Score=49.28  Aligned_cols=27  Identities=26%  Similarity=0.505  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.|+     |+.||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         26 PQGETLVLL-----GPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            466778888     999999999999998654

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.79  E-value=0.01  Score=47.70  Aligned_cols=27  Identities=30%  Similarity=0.305  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.+.     |+.||||||+.+.|+-.+
T Consensus        25 ~~Ge~~~l~-----G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         25 PAGGLLHLK-----GSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            467788888     999999999999997654

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=95.79  E-value=0.0067  Score=49.65  Aligned_cols=20  Identities=35%  Similarity=0.516  Sum_probs=17.7

Q ss_pred             ccCCCCCChhHHHHHHHHHh
Q 025529           42 LAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~~   61 (251)
                      |.|+|||||||..+.+.+..
T Consensus         3 v~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    3 VHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             EEcCCCCCHHHHHHHHHHhc
Confidence            44999999999999998874

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=95.79  E-value=0.019  Score=49.25  Aligned_cols=23  Identities=39%  Similarity=0.771  Sum_probs=21.0

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++|.     |+||+||||+++.+++.+
T Consensus        40 ~~ll~-----G~~G~GKt~~~~~l~~~l   62 (319)
T PRK00440         40 HLLFA-----GPPGTGKTTAALALAREL   62 (319)
T ss_pred             eEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            47888     999999999999999986

>PF13479 AAA_24: AAA domain

Probab=95.79  E-value=0.0075  Score=49.08  Aligned_cols=30  Identities=30%  Similarity=0.499  Sum_probs=22.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .+.+++|.     |+||+||||++..+   =+..+|++
T Consensus         2 ~~~~~lIy-----G~~G~GKTt~a~~~---~k~l~id~   31 (213)
T PF13479_consen    2 KPIKILIY-----GPPGSGKTTLAASL---PKPLFIDT   31 (213)
T ss_pred             CceEEEEE-----CCCCCCHHHHHHhC---CCeEEEEe
Confidence            46678888     99999999999888   23345555

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=95.78  E-value=0.077  Score=45.76  Aligned_cols=116  Identities=15%  Similarity=0.148  Sum_probs=64.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~  110 (251)
                      +...+++-     |+.|+|||++++.|++. +..++++..+.+..   ++.+|..-    ....+ +-..+...+...+.
T Consensus       126 ~~~~~vl~-----g~tg~gKt~Ll~~L~~~-~~~VvDlr~~a~hr---Gs~fG~~~----~~~qp-sq~~fe~~L~~~l~  191 (311)
T TIGR03167       126 PFPLIVLG-----GMTGSGKTELLHALANA-GAQVLDLEGLANHR---GSSFGALG----LGPQP-SQKRFENALAEALR  191 (311)
T ss_pred             CCceeccC-----CCCCcCHHHHHHHHhcC-CCeEEECCchHHhc---CcccCCCC----CCCCC-chHHHHHHHHHHHH
Confidence            33445566     99999999999999876 78888887654331   11111100    00000 01223334444444


Q ss_pred             CCCCCCceEEeCCCCCHHHH---HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          111 KPSCQKGFILDGFPRTEVQA---QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       111 ~~~~~~~~Iidg~~~~~~~~---~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ..+..+.+++.+-...+-..   ..|.+.|.   .  ..+|.+++|.+.+.+|+....
T Consensus       192 ~~~~~~~i~~e~es~~ig~~~~p~~l~~~m~---~--~~~i~i~~~~e~Rv~~l~~~Y  244 (311)
T TIGR03167       192 RLDPGRPIFVEDESRRIGRVALPDALFEAMR---A--APLVELEASLEERVERLVEEY  244 (311)
T ss_pred             hCCCCceEEEEeCchhhccccCCHHHHHHHh---h--CCEEEEECCHHHHHHHHHHHh
Confidence            44544566665433322211   22333332   2  247789999999999998764

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.78  E-value=0.0098  Score=48.36  Aligned_cols=27  Identities=22%  Similarity=0.330  Sum_probs=22.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..++++     |+.||||||+.+.|+-.+
T Consensus        11 ~~Ge~~~l~-----G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         11 GYHEHIGIL-----AAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhCCc
Confidence            456678888     999999999999998654

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.77  E-value=0.01  Score=47.83  Aligned_cols=28  Identities=21%  Similarity=0.313  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.+.+.     |+.||||||+.+.|+-.+
T Consensus        24 i~~Ge~~~l~-----G~nGsGKSTLl~~l~G~~   51 (204)
T PRK13538         24 LNAGELVQIE-----GPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             ECCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            3566788888     999999999999998754

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=95.77  E-value=0.01  Score=49.44  Aligned_cols=28  Identities=25%  Similarity=0.414  Sum_probs=25.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .++-+++|+     |++|+||||+++.+.+...
T Consensus        14 ~~Gqr~~I~-----G~~G~GKTTLlr~I~n~l~   41 (249)
T cd01128          14 GKGQRGLIV-----APPKAGKTTLLQSIANAIT   41 (249)
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHHhccc
Confidence            478899999     9999999999999998764

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=95.77  E-value=0.017  Score=54.43  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=26.7

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      .++-+..++|.     |++|+||||+++.|++.++..
T Consensus        34 ~~rl~hAyLf~-----Gp~GvGKTTlAr~lAk~L~c~   65 (647)
T PRK07994         34 LGRLHHAYLFS-----GTRGVGKTTIARLLAKGLNCE   65 (647)
T ss_pred             cCCCCeEEEEE-----CCCCCCHHHHHHHHHHhhhhc
Confidence            34456668899     999999999999999999753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
3tlx_A	243	Crystal Structure Of Pf10_0086, Adenylate Kinase Fr		2e-67
1ak2_A	233	Adenylate Kinase Isoenzyme-2 Length = 233		1e-65
2c9y_A	242	Structure Of Human Adenylate Kinase 2 Length = 242		2e-65
1aky_A	220	High-Resolution Structures Of Adenylate Kinase From		2e-63
3aky_A	220	Stability, Activity And Structure Of Adenylate Kina		5e-63
1dvr_A	220	Structure Of A Mutant Adenylate Kinase Ligated With		3e-61
3be4_A	217	Crystal Structure Of Cryptosporidium Parvum Adenyla		2e-59
3fb4_A	216	Crystal Structure Of Adenylate Kinase From Mariniba		2e-52
2rgx_A	206	Crystal Structure Of Adenylate Kinase From Aquifex		9e-52
2eu8_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		5e-51
2qaj_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		6e-51
2p3s_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		6e-51
1p3j_A	217	Adenylate Kinase From Bacillus Subtilis Length = 21		7e-51
2ori_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-50
1zin_A	217	Adenylate Kinase With Bound Ap5a Length = 217		2e-50
2oo7_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-50
2osb_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		3e-50
1ake_A	214	Structure Of The Complex Between Adenylate Kinase F		2e-49
3dl0_A	216	Crystal Structure Of Adenylate Kinase Variant Aklse		6e-49
3hpr_A	214	Crystal Structure Of V148g Adenylate Kinase From E.		1e-48
3gmt_A	230	Crystal Structure Of Adenylate Kinase From Burkhold		2e-48
1e4v_A	214	Mutant G10v Of Adenylate Kinase From E. Coli, Modif		3e-48
1e4y_A	214	Mutant P9l Of Adenylate Kinase From E. Coli, Modifi		3e-47
3dkv_A	217	Crystal Structure Of Adenylate Kinase Variant Aklse		3e-47
1s3g_A	217	Crystal Structure Of Adenylate Kinase From Bacillus		2e-44
2ak3_A	226	The Three-Dimensional Structure Of The Complex Betw		2e-44
1zd8_A	227	Structure Of Human Adenylate Kinase 3 Like 1 Length		1e-43
2ar7_A	246	Crystal Structure Of Human Adenylate Kinase 4, Ak4		5e-39
3ndp_A	231	Crystal Structure Of Human Ak4(L171p) Length = 231		3e-36
1zak_A	222	Adenylate Kinase From Maize In Complex With The Inh		2e-34
2cdn_A	201	Crystal Structure Of Mycobacterium Tuberculosis Ade		1e-28
1p4s_A	181	Solution Structure Of Mycobacterium Tuberculosis Ad		1e-28
3l0p_A	223	Crystal Structures Of Iron Containing Adenylate Kin		8e-26
2xb4_A	223	Crystal Structures Of Zinc Containing Adenylate Kin		9e-26
1z83_A	196	Crystal Structure Of Human Ak1a In Complex With Ap5		1e-24
3cm0_A	186	Crystal Structure Of Adenylate Kinase From Thermus		2e-24
3adk_A	195	Refined Structure Of Porcine Cytosolic Adenylate Ki		1e-23
3umf_A	217	Schistosoma Mansoni Adenylate Kinase Length = 217		3e-18
2bwj_A	199	Structure Of Adenylate Kinase 5 Length = 199		3e-18
1tev_A	196	Crystal Structure Of The Human UmpCMP KINASE IN OPE		5e-15
1uky_A	203	Substrate Specificity And Assembly Of Catalytic Cen		6e-15
1qf9_A	194	Ph Influences Fluoride Coordination Number Of The A		1e-13
1q3t_A	236	Solution Structure And Function Of An Essential Cmp		8e-04

>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From Plasmodium Falciparum Length = 243

Iteration: 1
 Score =  251 bits (641), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 118/244 (48%), Positives = 159/244 (65%), Gaps = 5/244 (2%)
Query: 8   NLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA 67
           NLE+  ++DL+ EL RR  C SKPD R I +     G PGSGKGTQS  +K  +C CHL+
Sbjct: 5   NLENFSTIDLLNELKRRYACLSKPDGRYIFL-----GAPGSGKGTQSLNLKKSHCYCHLS 59
Query: 68  TGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTE 127
           TGD+LR A   KT LG+K K  +++G+LV D +V+ ++DE +K P C+KGFILDG+PR  
Sbjct: 60  TGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNV 119
Query: 128 VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVD 187
            QA+ L+++L+K   K+D V  F + D VL  RI+GR IH  SGR YH  F PPKVP  D
Sbjct: 120 KQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRD 179
Query: 188 DVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQK 247
           DVT EPLIQR+DD   VLK RL  F  +T P+I YY  K ++  L A +P  ++  ++ +
Sbjct: 180 DVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQ 239
Query: 248 ALSA 251
            +  
Sbjct: 240 HIDG 243

>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2 Length = 233

Iteration: 1
 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 112/209 (53%), Positives = 155/209 (74%)
Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           L GPPG+GKGTQ+P +   +C+CHLATGDMLRA VA+ + LG K K  MD G+LVSD++V
Sbjct: 21  LLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMV 80
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
           + +I++ ++ P C+ GF+LDGFPRT  QA+ LD+++EK+ +K+D V+ F+I D++L  RI
Sbjct: 81  LELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRI 140
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
           TGR IHP SGR+YH +F PPK P  DD+TGEPLI+R DD    LK RLEA+H QT P+++
Sbjct: 141 TGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVE 200
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
           YYSK+GI + + A + P  V + +  A S
Sbjct: 201 YYSKRGIHSAIDASQTPDVVFASILAAFS 229

>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2 Length = 242

Iteration: 1
 Score =  245 bits (626), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 113/213 (53%), Positives = 156/213 (73%)
Query: 38  IIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 97
           I   L GPPG+GKGTQ+P + + +C+CHLATGDMLRA VA+ + LG K K  MD G+LVS
Sbjct: 17  IRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS 76
Query: 98  DDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 157
           D++VV +I++ ++ P C+ GF+LDGFPRT  QA+ LD+++EK+ +K+D V+ F+I D++L
Sbjct: 77  DEMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLL 136
Query: 158 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 217
             RITGR IHP SGR+YH +F PPK P  DD+TGEPLI+R DD    LK RL+A+H QT 
Sbjct: 137 IRRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTT 196
Query: 218 PVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
           P+I+YY K+GI + + A + P  V + +  A S
Sbjct: 197 PLIEYYRKRGIHSAIDASQTPDVVFASILAAFS 229

>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast Ligated With Inhibitor Ap5a, Showing The Pathway Of Phosphoryl Transfer Length = 220

Iteration: 1
 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 155/218 (71%), Gaps = 6/218 (2%)
Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
           R++LI     GPPG+GKGTQ+P +++ +   HLATGDMLR+ +A  T LG++AK+ MD+G
Sbjct: 6   RMVLI-----GPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQG 60
Query: 94  ELVSDDLVVGII-DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
            LVSDD++V +I DE    P+C+ GFILDGFPRT  QA+KLD+ML++QG  ++K +   +
Sbjct: 61  GLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV 120
Query: 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 212
           DD +L  RITGR IHP+SGR+YH  F PPK    DDVTGE L+QR DD A  LK RL A+
Sbjct: 121 DDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAY 180
Query: 213 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
           H QTEP++D+Y K GI A + A +PP  V +++   L 
Sbjct: 181 HAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218

>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase Mutants Length = 220

Iteration: 1
 Score =  237 bits (604), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 154/218 (70%), Gaps = 6/218 (2%)
Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
           R++LI     GPPG+GKGTQ+P +++ +   HLATGDMLR+ +A  T LG++AK+ MD+G
Sbjct: 6   RMVLI-----GPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQG 60
Query: 94  ELVSDDLVVGII-DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
            LVSDD++V +I DE    P+C+ GFILDGFPRT  QA+KLD+ML++QG  ++K +   +
Sbjct: 61  GLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV 120
Query: 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 212
           DD +L  RITGR IHP+SGR+YH  F PPK    DDVTGE L+QR DD A  LK RL A+
Sbjct: 121 DDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAY 180
Query: 213 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
           H QTEP++D+Y K GI A + A +PP  V ++    L 
Sbjct: 181 HAQTEPIVDFYKKTGIWAGVDASQPPATVWADFLNKLG 218

>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An Atp- Analogue Showing Domain Closure Over Atp Length = 220

Iteration: 1
 Score =  231 bits (589), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 153/218 (70%), Gaps = 6/218 (2%)
Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
           R++LI     GPPG+GKGTQ+P +++ +   HLATGDMLR+ +A  T LG++AK+ MD+G
Sbjct: 6   RMVLI-----GPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQG 60
Query: 94  ELVSDDLVVGII-DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
            LVSDD++V +I DE    P+C+ GFIL GFPRT  QA+KLD+ML++QG  ++K +   +
Sbjct: 61  GLVSDDIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV 120
Query: 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 212
           DD +L  RITGR IHP+SGR+YH  F PPK    DDVTGE L+Q  DD A  LK RL A+
Sbjct: 121 DDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAY 180
Query: 213 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
           H QTEP++D+Y K GI A + A +PP  V +++   L 
Sbjct: 181 HAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218

>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate Kinase Cgd5_3360 Length = 217

Iteration: 1
 Score =  225 bits (573), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 104/208 (50%), Positives = 144/208 (69%)
Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           L G PGSGKGTQ   IK EY L HL+TGDMLR A+   T +G++AK  ++ G  V D++V
Sbjct: 10  LIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIV 69
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
           +G++ E      C  GF+LDGFPRT  QA+ L ++L + G  +  V+ F IDD+ + ERI
Sbjct: 70  LGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERI 129
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
           +GR  HP+SGR YH K+ PPK PG+DDVTGEPL+ R DD A  +K RL+ FHKQT P++ 
Sbjct: 130 SGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVK 189
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
           +Y   GI+ +++A+ PP+EVT +++K L
Sbjct: 190 FYEDLGILKRVNAKLPPKEVTEQIKKIL 217

>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus Marinus Length = 216

Iteration: 1
 Score =  202 bits (514), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/212 (45%), Positives = 139/212 (65%)
Query: 40  VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
           + L G PG+GKGTQ+  I ++Y + H++TGDM RAA+   T LG+KAK  MD+G LV D+
Sbjct: 3   IVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDE 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
           + +GI+ E + K  CQKGF+LDGFPRT  QA  LD +L   GKK+D VLN  ++   L +
Sbjct: 63  VTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMK 122
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
           R+TGRWI  + G TYHT F PP V G+ D  G  L QR DD    +K+RL+   KQT+P+
Sbjct: 123 RLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPL 182
Query: 220 IDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           +D+YS+KG++  +  ++  ++V  ++   L  
Sbjct: 183 LDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214

>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex Aeolicus In Complex With Ap5a Length = 206

Iteration: 1
 Score =  199 bits (507), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/214 (49%), Positives = 143/214 (66%), Gaps = 11/214 (5%)
Query: 37  LIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELV 96
           +I+V+L GPPG+GKGTQ+  +  E    H++TGD+LR AV   TPLG KAKE M++GELV
Sbjct: 1   MILVFL-GPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELV 59
Query: 97  SDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAV 156
            DDL++ +I+E   K       I DGFPRT  QA+ LDEMLEK+G KVD VL F + D V
Sbjct: 60  PDDLIIALIEEVFPK---HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEV 116
Query: 157 LEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQT 216
           + ER++GR I+P +G  YH K+ PP  PGV       +IQR+DD   V+K RLE + +QT
Sbjct: 117 VIERLSGRRINPETGEVYHVKYNPPP-PGVK------VIQREDDKPEVIKKRLEVYREQT 169
Query: 217 EPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
            P+I+YY KKGI+  + A KP +EV  +V + + 
Sbjct: 170 APLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203

>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199r) Length = 216

Iteration: 1
 Score =  197 bits (501), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 100/210 (47%), Positives = 143/210 (68%)
Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           L G PG+GKGTQ   I ++Y + H++TGDM RAA+  +TPLG++AK  +DKGELV D++ 
Sbjct: 5   LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
           +GI+ E + K  C++GF+LDGFPRT  QA+ L+E+LE+ GK +D V+N  +D  VL ER+
Sbjct: 65  IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
           TGR I    G TYH  F PPK PG+ D  G  L QR DD    +  RLE   KQT+P++D
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           +YS+KG +A ++ ++  Q+V ++V+  L  
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLGG 214

>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199rG213E) Length = 217

Iteration: 1
 Score =  197 bits (500), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 100/210 (47%), Positives = 143/210 (68%)
Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           L G PG+GKGTQ   I ++Y + H++TGDM RAA+  +TPLG++AK  +DKGELV D++ 
Sbjct: 5   LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
           +GI+ E + K  C++GF+LDGFPRT  QA+ L+E+LE+ GK +D V+N  +D  VL ER+
Sbjct: 65  IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
           TGR I    G TYH  F PPK PG+ D  G  L QR DD    +  RLE   KQT+P++D
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           +YS+KG +A ++ ++  Q+V ++V+  L  
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLEG 214

>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (G214rQ199R) Length = 217

Iteration: 1
 Score =  197 bits (500), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 100/209 (47%), Positives = 143/209 (68%)
Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           L G PG+GKGTQ   I ++Y + H++TGDM RAA+  +TPLG++AK  +DKGELV D++ 
Sbjct: 5   LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
           +GI+ E + K  C++GF+LDGFPRT  QA+ L+E+LE+ GK +D V+N  +D  VL ER+
Sbjct: 65  IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
           TGR I    G TYH  F PPK PG+ D  G  L QR DD    +  RLE   KQT+P++D
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
           +YS+KG +A ++ ++  Q+V ++V+  L 
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLG 213

>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis Length = 217

Iteration: 1
 Score =  196 bits (499), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 100/210 (47%), Positives = 143/210 (68%)
Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           L G PG+GKGTQ   I ++Y + H++TGDM RAA+  +TPLG++AK  +DKGELV D++ 
Sbjct: 5   LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
           +GI+ E + K  C++GF+LDGFPRT  QA+ L+E+LE+ GK +D V+N  +D  VL ER+
Sbjct: 65  IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
           TGR I    G TYH  F PPK PG+ D  G  L QR DD    +  RLE   KQT+P++D
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           +YS+KG +A ++ ++  Q+V ++V+  L  
Sbjct: 185 FYSEKGYLANVNGQQDIQDVYADVKDLLGG 214

>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (A193vQ199R) Length = 216

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/210 (47%), Positives = 142/210 (67%)
Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           L G PG+GKGTQ   I ++Y + H++TGDM RAA+  +TPLG++AK  +DKGELV D++ 
Sbjct: 5   LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
           +GI+ E + K  C++GF+LDGFPRT  QA+ L+E+LE+ GK +D V+N  +D  VL ER+
Sbjct: 65  IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
           TGR I    G TYH  F PPK PG+ D  G  L QR DD    +  RLE   KQT+P++D
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           +YS+KG +  ++ ++  Q+V ++V+  L  
Sbjct: 185 FYSEKGYLVNVNGQRDIQDVYADVKDLLGG 214

>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a Length = 217

Iteration: 1
 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/210 (44%), Positives = 138/210 (65%)
Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           L G PG+GKGTQ+  I   Y + H++TGDM RAA+   TPLG++AK+ MD+G+LV D++ 
Sbjct: 5   LMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
           +GI+ E + K  CQ GF+LDGFPRT  QA+ L+ ML   G+K+D V++  +   VL ER+
Sbjct: 65  IGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
           TGR I  + G TYH  F PP  PGV D  G  L QR DD  A + +RLE   KQ +P++D
Sbjct: 125 TGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           +Y +KG +  ++ E+  ++V +++++ L  
Sbjct: 185 FYEQKGYLRNINGEQDMEKVFADIRELLGG 214

>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (T179iQ199R) Length = 217

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/210 (47%), Positives = 142/210 (67%)
Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           L G PG+GKGTQ   I ++Y + H++TGDM RAA+  +TPLG++AK  +DKGELV D++ 
Sbjct: 5   LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
           +GI+ E + K  C++GF+LDGFPRT  QA+ L+E+LE+ GK +D V+N  +D  VL ER+
Sbjct: 65  IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
           TGR I    G TYH  F PPK PG+ D  G  L QR DD    +  RLE   KQ +P++D
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQIQPLLD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           +YS+KG +A ++ ++  Q+V ++V+  L  
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLGG 214

>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (q16l/q199r/) Length = 216

Iteration: 1
 Score =  194 bits (493), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/210 (47%), Positives = 142/210 (67%)
Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           L G PG+GKGT    I ++Y + H++TGDM RAA+  +TPLG++AK  +DKGELV D++ 
Sbjct: 5   LMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
           +GI+ E + K  C++GF+LDGFPRT  QA+ L+E+LE+ GK +D V+N  +D  VL ER+
Sbjct: 65  IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
           TGR I    G TYH  F PPK PG+ D  G  L QR DD    +  RLE   KQT+P++D
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           +YS+KG +A ++ ++  Q+V ++V+  L  
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLGG 214

>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From Escherichia Coli And The Inhibitor Ap5a Refined At 1.9 Angstroms Resolution: A Model For A Catalytic Transition State Length = 214

Iteration: 1
 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 138/216 (63%), Gaps = 9/216 (4%)
Query: 40  VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
           + L G PG+GKGTQ+  I ++Y +  ++TGDMLRAAV + + LG +AK+ MD G+LV+D+
Sbjct: 3   IILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDE 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
           LV+ ++ E + +  C+ GF+LDGFPRT  QA  + E     G  VD VL F + D ++ +
Sbjct: 63  LVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIVD 118
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
           RI GR +H  SGR YH KF PPKV G DDVTGE L  RKDD    ++ RL  +H+ T P+
Sbjct: 119 RIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPL 178
Query: 220 IDYYSKKG-----IVAQLHAEKPPQEVTSEVQKALS 250
           I YYSK+        A++   KP  EV ++++K L 
Sbjct: 179 IGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214

>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3 Length = 216

Iteration: 1
 Score =  190 bits (483), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 97/210 (46%), Positives = 140/210 (66%)
Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           L G PG+GKGTQ   I ++Y + H++TGDM RAA+  +TPLG++AK  +DKGELV D++ 
Sbjct: 5   LMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
           +GI+ E + K  C++GF+LDGFPRT  QA+ L+E+LE+ GK +D V+N  +D  VL ER+
Sbjct: 65  IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
           TGR I    G TYH  F PPK PG+ D  G  L QR DD    +  RLE   KQT P++D
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           +Y +KG +  ++ ++  Q+V ++++  L  
Sbjct: 185 FYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214

>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli, In Complex With Ap5a Length = 214

Iteration: 1
 Score =  189 bits (479), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/216 (44%), Positives = 137/216 (63%), Gaps = 9/216 (4%)
Query: 40  VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
           + L G PG+GKGTQ+  I ++Y +  ++TGDMLRAAV + + LG +AK+ MD G+LV+D+
Sbjct: 3   IILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDE 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
           LV+ ++ E + +  C+ GF+LDGFPRT  QA  + E     G  VD VL F + D ++ +
Sbjct: 63  LVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIVD 118
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
           RI GR +H  SGR YH KF PPKV G DD TGE L  RKDD    ++ RL  +H+ T P+
Sbjct: 119 RIVGRRVHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPL 178
Query: 220 IDYYSKKG-----IVAQLHAEKPPQEVTSEVQKALS 250
           I YYSK+        A++   KP  EV ++++K L 
Sbjct: 179 IGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214

>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia Pseu Length = 230

Iteration: 1
 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/191 (48%), Positives = 126/191 (65%), Gaps = 9/191 (4%)
Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
           RLIL+     G PG+GKGTQ+  IK+++ +  ++TGD LRAAV A TPLG++AK   D+G
Sbjct: 10  RLILL-----GAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEG 64
Query: 94  ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 153
           +LV D L++G++ E +K+  C  G++ DGFPRT  QA    E     G  +D VL   + 
Sbjct: 65  KLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAXKEA----GVAIDYVLEIDVP 120
Query: 154 DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH 213
            + + ER +GR  HP+SGRTYH KF PPKV G DDVTGEPL+QR DD    +K RL+ + 
Sbjct: 121 FSEIIERXSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYE 180
Query: 214 KQTEPVIDYYS 224
            QT+P+I YY 
Sbjct: 181 AQTKPLITYYG 191

>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score =  188 bits (477), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/216 (44%), Positives = 137/216 (63%), Gaps = 9/216 (4%)
Query: 40  VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
           + L G P +GKGTQ+  I ++Y +  ++TGDMLRAAV + + LG +AK+ MD G+LV+D+
Sbjct: 3   IILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDE 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
           LV+ ++ E + +  C+ GF+LDGFPRT  QA  + E     G  VD VL F + D ++ +
Sbjct: 63  LVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIVD 118
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
           RI GR +H  SGR YH KF PPKV G DDVTGE L  RKDD    ++ RL  +H+ T P+
Sbjct: 119 RIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPL 178
Query: 220 IDYYSKKG-----IVAQLHAEKPPQEVTSEVQKALS 250
           I YYSK+        A++   KP  EV ++++K L 
Sbjct: 179 IGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214

>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score =  185 bits (469), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 136/216 (62%), Gaps = 9/216 (4%)
Query: 40  VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
           + L G   +GKGTQ+  I ++Y +  ++TGDMLRAAV + + LG +AK+ MD G+LV+D+
Sbjct: 3   IILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDE 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
           LV+ ++ E + +  C+ GF+LDGFPRT  QA  + E     G  VD VL F + D ++ +
Sbjct: 63  LVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIVD 118
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
           RI GR +H  SGR YH KF PPKV G DDVTGE L  RKDD    ++ RL  +H+ T P+
Sbjct: 119 RIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPL 178
Query: 220 IDYYSKKG-----IVAQLHAEKPPQEVTSEVQKALS 250
           I YYSK+        A++   KP  EV ++++K L 
Sbjct: 179 IGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214

>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1 Length = 217

Iteration: 1
 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 94/212 (44%), Positives = 139/212 (65%)
Query: 40  VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
           + L G PG+GKGTQ+  I ++Y + H++TGDM RAA+  +TPLG++AK  +DKGELV D+
Sbjct: 3   IVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
           + +GI+ E + K  C++GF+LDGFPRT  QA+ L+E+LE+ G+ +D V+N  +D   L E
Sbjct: 63  VTIGIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELME 122
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
           R+TGR I    G TYH  F PPK PG+ D  G  L QR DD    +  RLE   KQT P+
Sbjct: 123 RLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPL 182
Query: 220 IDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           + +Y  K ++  ++ ++  Q+V ++V+  L  
Sbjct: 183 LAFYDSKEVLVNVNGQQDIQDVFADVKVILGG 214

>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus Globisporus Length = 217

Iteration: 1
 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/212 (41%), Positives = 128/212 (60%)
Query: 40  VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
           + L G PG+GKGTQ+  I ++Y   H++TGDM RAA+   T LG+KAK  MD+G LV D+
Sbjct: 3   IVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDE 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
           + +GI+ E + K  C  GF+LDGFPRT  QA+ LD++L   G+K++ VLN  ++   L  
Sbjct: 63  VTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIA 122
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
           R+TGR I    G +YH  F PP+V G  D  G  L QR DD    + +RLE    QT P+
Sbjct: 123 RLTGRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAPL 182
Query: 220 IDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           + +Y  K ++  ++ +K  ++V  ++   L  
Sbjct: 183 LAFYDSKEVLVNINGQKDIKDVFKDLDVILQG 214

>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between Mitochondrial Matrix Adenylate Kinase And Its Substrate Amp At 1.85 Angstroms Resolution Length = 226

Iteration: 1
 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 125/188 (66%), Gaps = 6/188 (3%)
Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           + G PGSGKGT S  I   + L HL++GD+LR  +   T +G+ AK  +D+G+L+ DD++
Sbjct: 11  IMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVM 70
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
             ++   +K    Q  ++LDGFPRT  QA+ LD     +  ++D V+N  +   V+++R+
Sbjct: 71  TRLVLHELKN-LTQYNWLLDGFPRTLPQAEALD-----RAYQIDTVINLNVPFEVIKQRL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
           T RWIHP SGR Y+ +F PPK  G+DD+TGEPL+QR+DD    +  RL+A+  QTEPV++
Sbjct: 125 TARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEPVLE 184
Query: 222 YYSKKGIV 229
           YY KKG++
Sbjct: 185 YYRKKGVL 192

>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1 Length = 227

Iteration: 1
 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 125/188 (66%), Gaps = 6/188 (3%)
Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           + G PGSGKGT S  I   + L HL++GD+LR  +   T +G+ AK  +D+G+L+ DD++
Sbjct: 12  IMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVM 71
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
             +    +K    Q  ++LDGFPRT  QA+ LD     +  ++D V+N  +   V+++R+
Sbjct: 72  TRLALHELKN-LTQYSWLLDGFPRTLPQAEALD-----RAYQIDTVINLNVPFEVIKQRL 125
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
           T RWIHP+SGR Y+ +F PPK  G+DD+TGEPLIQR+DD    +  RL+A+  QT+PV++
Sbjct: 126 TARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLE 185
Query: 222 YYSKKGIV 229
           YY KKG++
Sbjct: 186 YYQKKGVL 193

>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4 Length = 246

Iteration: 1
 Score =  157 bits (397), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 88/218 (40%), Positives = 128/218 (58%), Gaps = 12/218 (5%)
Query: 15  VDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA 74
           VDL TE L     ASK  + +IL      GPPGSGKGT    I   + L HL++G  LR 
Sbjct: 11  VDLGTENLYFQSMASKLLRAVIL------GPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 64
Query: 75  AVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLD 134
            + A T +G  AK+ ++K  LV D ++  ++   ++    Q  ++LDGFPRT  QA+ LD
Sbjct: 65  NIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH-WLLDGFPRTLGQAEALD 123
Query: 135 EMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 194
           ++ E     VD V++  I    L++R++ RWIHP SGR Y+  F PP V G+DDVTGEPL
Sbjct: 124 KICE-----VDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPL 178
Query: 195 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQL 232
           +Q++DD    + +RL  +    +PVI+ Y  +G++ Q 
Sbjct: 179 VQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQF 216

>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p) Length = 231

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 115/191 (60%), Gaps = 6/191 (3%)
Query: 42  LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
           + GPPGSGKGT    I   + L HL++G  LR  + A T +G  AK+ ++K  LV D ++
Sbjct: 10  ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVI 69
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
             ++   ++    Q  ++LDGFPRT  QA+ LD++ E     VD V++  I    L++R+
Sbjct: 70  TRLMMSELENRRGQH-WLLDGFPRTLGQAEALDKICE-----VDLVISLNIPFETLKDRL 123
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
           + RWIHP SGR Y+  F PP V G+DDVTGEPL+Q++DD    + +R   +    +PVI+
Sbjct: 124 SRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKPVIE 183
Query: 222 YYSKKGIVAQL 232
            Y  +G++ Q 
Sbjct: 184 LYKSRGVLHQF 194

>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a) Length = 222

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/213 (36%), Positives = 130/213 (61%), Gaps = 11/213 (5%)
Query: 40  VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
           V ++G P SGKGTQ  +IK +Y L H++ GD+LRA +AA +  G +AKE M+KG+LV D+
Sbjct: 8   VMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDE 67
Query: 100 LVVGIIDEAMKKPSCQK-GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 158
           +VV ++ E +++P  Q+ G++LDG+PR+  QA  L E LE    + D  +   + D +L 
Sbjct: 68  IVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMAL-ETLE---IRPDTFILLDVPDELLV 123
Query: 159 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 218
           ER+ GR + P +G+ YH K++PP+    ++     L QR DDT   +K RLE +++  E 
Sbjct: 124 ERVVGRRLDPVTGKIYHLKYSPPE----NEEIASRLTQRFDDTEEKVKLRLETYYQNIES 179
Query: 219 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           ++  Y  + I+ ++  +     V +++ + L +
Sbjct: 180 LLSTY--ENIIVKVQGDATVDAVFAKIDELLGS 210

>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate Kinase Complexed With Two Molecules Of Adp And Mg Length = 201

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 31/184 (16%)
Query: 40  VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
           V L GPPG+GKGTQ+  + ++  +  ++TG++ R  +   T LG++AK  +D G+LV  D
Sbjct: 23  VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSD 82
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
           L   ++D+ +  P    GFILDG+PR+  QA+ L EMLE++G  +D VL F + + VL E
Sbjct: 83  LTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE 142
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
           R+ GR                                R DDT  V+ +R++ +  +T P+
Sbjct: 143 RLKGRG-------------------------------RADDTDDVILNRMKVYRDETAPL 171
Query: 220 IDYY 223
           ++YY
Sbjct: 172 LEYY 175

>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate Kinase Length = 181

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 31/184 (16%)
Query: 40  VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
           V L GPPG+GKGTQ+  + ++  +  ++TG++ R  +   T LG++AK  +D G+LV  D
Sbjct: 3   VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSD 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
           L   ++D+ +  P    GFILDG+PR+  QA+ L EMLE++G  +D VL F + + VL E
Sbjct: 63  LTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE 122
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
           R+ GR                                R DDT  V+ +R++ +  +T P+
Sbjct: 123 RLKGRG-------------------------------RADDTDDVILNRMKVYRDETAPL 151
Query: 220 IDYY 223
           ++YY
Sbjct: 152 LEYY 155

>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score =  113 bits (283), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 6/192 (3%)
Query: 40  VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
           + + GP GSGKGTQ  ++KD+Y L H+ +G + R  +   T LG KAKE +D+G+LV DD
Sbjct: 3   ILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDD 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
           + + ++ E ++    + G++LDGFPR  VQAQKL E L+++G K++ V+   +   V + 
Sbjct: 63  ITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKN 121
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVD--DVTGEPLIQRKDDT-AAVLKSRLEAFHKQT 216
           RI GR I  ++    +  F     P  D   V G  L  R DD     +  R + ++   
Sbjct: 122 RIMGRRICKNNPNHPNNIFIEAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTV 181
Query: 217 EPVI--DYYSKK 226
           +  +   YY K 
Sbjct: 182 DGTLAAAYYYKN 193

>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score =  113 bits (283), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 6/192 (3%)
Query: 40  VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
           + + GP GSGKGTQ  ++KD+Y L H+ +G + R  +   T LG KAKE +D+G+LV DD
Sbjct: 3   ILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDD 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
           + + ++ E ++    + G++LDGFPR  VQAQKL E L+++G K++ V+   +   V + 
Sbjct: 63  ITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKN 121
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVD--DVTGEPLIQRKDDT-AAVLKSRLEAFHKQT 216
           RI GR I  ++    +  F     P  D   V G  L  R DD     +  R + ++   
Sbjct: 122 RIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTV 181
Query: 217 EPVI--DYYSKK 226
           +  +   YY K 
Sbjct: 182 DGTLAAAYYYKN 193

>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a Length = 196

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 112/214 (52%), Gaps = 32/214 (14%)
Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           I+++ G PGSGKGTQ   I  +Y   HL+TGD+LR+ V++ +  G K  E M+KG+LV  
Sbjct: 11  IIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPL 70
Query: 99  DLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 157
           + V+ ++ +AM  K +  KGF++DG+PR EVQ     E  E++  +   +L        +
Sbjct: 71  ETVLDMLRDAMVAKVNTSKGFLIDGYPR-EVQQ---GEEFERRIGQPTLLLYVDAGPETM 126
Query: 158 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 217
            +R+  R    +SGR                          DD    +K RLE ++K TE
Sbjct: 127 TQRLLKRG--ETSGRV-------------------------DDNEETIKKRLETYYKATE 159
Query: 218 PVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           PVI +Y K+GIV +++AE     V S+V   L A
Sbjct: 160 PVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDA 193

>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus Thermophilus Hb8 Length = 186

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 106/211 (50%), Gaps = 32/211 (15%)
Query: 40  VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
           V   GPPG+GKGTQ+  +  E     L+TGD+LR  VA  TPLG + +  M++G+LV DD
Sbjct: 7   VIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDD 66
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
           L++ +I E + +       I DGFPRT  QA+ LD +L + G ++  V+   + +  L  
Sbjct: 67  LILELIREELAER-----VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVR 121
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
           RI  R                             L  R DD    ++ RLE + ++TEP+
Sbjct: 122 RILRRA---------------------------ELEGRSDDNEETVRRRLEVYREKTEPL 154
Query: 220 IDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
           + YY  +G++ ++     P EV + ++ AL 
Sbjct: 155 VGYYEARGVLKRVDGLGTPDEVYARIRAALG 185

>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At 2.1 Angstroms Resolution Length = 195

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 110/211 (52%), Gaps = 38/211 (18%)
Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           I+++ G PGSGKGTQ   I  +Y   HL+TGD+LRA V++ +  G    E M+KG+LV  
Sbjct: 11  IIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPL 70
Query: 99  DLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDK-VLNFAIDDAV 156
           + V+ ++ +AM  K    KGF++DG+PR   Q ++ +       +K+ +  L   +D   
Sbjct: 71  ETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFE-------RKIGQPTLLLYVDAG- 122
Query: 157 LEERITGRWIH--PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHK 214
             E +T R +    +SGR                          DD    +K RLE ++K
Sbjct: 123 -PETMTKRLLKRGETSGRV-------------------------DDNEETIKKRLETYYK 156
Query: 215 QTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 245
            TEPVI +Y K+GIV +++AE    +V S+V
Sbjct: 157 ATEPVIAFYEKRGIVRKVNAEGSVDDVFSQV 187

>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase Length = 217

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 104/214 (48%), Gaps = 36/214 (16%)
Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           ++++ G PGSGKGTQ   +  ++   HL++GD+LRA V + +P G + K  M++GELV  
Sbjct: 31  VIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPL 90
Query: 99  DLVVGIIDEAMKK---PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDA 155
           ++V+ ++ EAM K    +C   F++DG+PR   Q  K     EK+      V+NF + + 
Sbjct: 91  EVVLALLKEAMIKLVDKNCH--FLIDGYPRELDQGIK----FEKEVCPCLCVINFDVSEE 144
Query: 156 VLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQ 215
           V+ +R+  R    +S R                          DD    +  R   F++ 
Sbjct: 145 VMRKRLLKRA--ETSNRV-------------------------DDNEETIVKRFRTFNEL 177
Query: 216 TEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
           T+PVI++Y ++  V  + A      +  +V   L
Sbjct: 178 TKPVIEHYKQQNKVITIDASGTVDAIFDKVNHEL 211

>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5 Length = 199

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 111/215 (51%), Gaps = 34/215 (15%)
Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           I+++ G PGSGKGTQ   + ++Y   HL+TG++LR  +A+++      ++ M++G+LV  
Sbjct: 14  IIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPS 73
Query: 99  DLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKV-DKVLNFAIDDAV 156
            +V+ ++ EAM       +GF++DG+PR   Q ++        G+++ D  L   +D + 
Sbjct: 74  GIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEF-------GRRIGDPQLVICMDCSA 126
Query: 157 LEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQT 216
             + +T R +  S             +P              DDT   +  RLEA+++ +
Sbjct: 127 --DTMTNRLLQMSR----------SSLP-------------VDDTTKTIAKRLEAYYRAS 161
Query: 217 EPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
            PVI YY  K  + +++AE  P++V  ++  A+ +
Sbjct: 162 IPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDS 196

>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN Conformation Length = 196

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 37/215 (17%)
Query: 38  IIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP---LGIKAKEAMDKGE 94
           ++V++ G PG+GKGTQ   I ++Y   HL+ G++LR     K P    G   ++ + +G+
Sbjct: 4   LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDE--RKNPDSQYGELIEKYIKEGK 61
Query: 95  LVSDDLVVGII----DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 150
           +V  ++ + ++    D+ M   + +  F++DGFPR +   Q  ++ ++ +   V  VL F
Sbjct: 62  IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKAD-VSFVLFF 120
Query: 151 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLE 210
             ++ +  ER   R    SSGR+                         DD    L+ R++
Sbjct: 121 DCNNEICIERCLER--GKSSGRS-------------------------DDNRESLEKRIQ 153
Query: 211 AFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 245
            + + T+P+ID Y + G V ++ A K   EV  EV
Sbjct: 154 TYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEV 188

>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase Length = 203

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 108/227 (47%), Gaps = 41/227 (18%)
Query: 28  ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA-AKTPLGIKA 86
           A  PD+   + ++++ G PG+GKGTQ   +  +Y   HL+ GD+LRA    A +  G   
Sbjct: 9   AFSPDQ---VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELI 65
Query: 87  KEAMDKGELVSDDLVVGIIDEAMKK--PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKV 144
           K  + +G++V  ++ + ++  A+     + +  F++DGFPR      K+D+ +  +   V
Sbjct: 66  KNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPR------KMDQAISFERDIV 119
Query: 145 DK--VLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTA 202
           +   +L F   + ++ ER+  R    +SGR+                         DD  
Sbjct: 120 ESKFILFFDCPEDIMLERLLERG--KTSGRS-------------------------DDNI 152
Query: 203 AVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
             +K R   F + + PVI+Y+  K  V ++  ++  ++V  +VQ A+
Sbjct: 153 ESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAI 199

>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx Phosphoryl Transfer Transition State Analog In UmpCMP Kinase Length = 194

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 35/223 (15%)
Query: 29  SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKE 88
           SKP+      +V++ G PGSGKGTQ   I  ++   HL+ GD+LR    + +  G     
Sbjct: 4   SKPN------VVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIAT 57
Query: 89  AMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVL 148
            +  GE+V   + V ++  A+   +  K F++DGFPR E      +E + K       VL
Sbjct: 58  MIKNGEIVPSIVTVKLLKNAI-DANQGKNFLVDGFPRNEENNNSWEENM-KDFVDTKFVL 115
Query: 149 NFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSR 208
            F   + V+ +R+  R    SSGR+                         DD    +K R
Sbjct: 116 FFDCPEEVMTQRLLKR--GESSGRS-------------------------DDNIESIKKR 148
Query: 209 LEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
              F+ QT+ VID+Y+K   V  + A +   EV ++V+    +
Sbjct: 149 FNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191

>pdb|1Q3T|A Chain A, Solution Structure And Function Of An Essential Cmp Kinase Of Streptococcus Pneumoniae Length = 236

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 38 IIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA--VAAKTPLGIKAKEAM 90
          I + + GP  SGK T + II  ++   +L TG M RAA  +A K  LG++  EA+
Sbjct: 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEAL 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	1e-138
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	1e-127
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	1e-126
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	1e-125
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	1e-125
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	1e-125
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	1e-121
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	1e-120
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	1e-119
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	1e-116
2rgx_A	206	Adenylate kinase; transferase(phosphotransferase),	1e-111
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	1e-110
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	1e-109
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	5e-86
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	4e-82
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	2e-78
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	8e-77
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	4e-75
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	2e-72
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	3e-71
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	4e-31
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	9e-15
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	1e-05
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	1e-05
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	3e-05
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	3e-05
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	8e-05
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	3e-04
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	4e-04

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Length = 243

 Score =  387 bits (996), Expect = e-138
 Identities = 118/246 (47%), Positives = 159/246 (64%), Gaps = 5/246 (2%)

Query: 6   AANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH 65
             NLE+  ++DL+ EL RR  C SKPD R I +     G PGSGKGTQS  +K  +C CH
Sbjct: 3   NENLENFSTIDLLNELKRRYACLSKPDGRYIFL-----GAPGSGKGTQSLNLKKSHCYCH 57

Query: 66  LATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPR 125
           L+TGD+LR A   KT LG+K K  +++G+LV D +V+ ++DE +K P C+KGFILDG+PR
Sbjct: 58  LSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPR 117

Query: 126 TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG 185
              QA+ L+++L+K   K+D V  F + D VL  RI+GR IH  SGR YH  F PPKVP 
Sbjct: 118 NVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPF 177

Query: 186 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 245
            DDVT EPLIQR+DD   VLK RL  F  +T P+I YY  K ++  L A +P  ++  ++
Sbjct: 178 RDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKI 237

Query: 246 QKALSA 251
            + +  
Sbjct: 238 SQHIDG 243

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Length = 217

 Score =  357 bits (919), Expect = e-127
 Identities = 107/222 (48%), Positives = 148/222 (66%), Gaps = 5/222 (2%)

Query: 28  ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAK 87
            +     LILI     G PGSGKGTQ   IK EY L HL+TGDMLR A+   T +G++AK
Sbjct: 1   GNSKKHNLILI-----GAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAK 55

Query: 88  EAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKV 147
             ++ G  V D++V+G++ E      C  GF+LDGFPRT  QA+ L ++L + G  +  V
Sbjct: 56  SIIESGNFVGDEIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSV 115

Query: 148 LNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKS 207
           + F IDD+ + ERI+GR  HP+SGR YH K+ PPK PG+DDVTGEPL+ R DD A  +K 
Sbjct: 116 IYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKV 175

Query: 208 RLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
           RL+ FHKQT P++ +Y   GI+ +++A+ PP+EVT +++K L
Sbjct: 176 RLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Length = 233

 Score =  355 bits (914), Expect = e-126
 Identities = 116/241 (48%), Positives = 167/241 (69%), Gaps = 13/241 (5%)

Query: 11  DVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD 70
           +VP+ + + E  + +        R +L+     GPPG+GKGTQ+P +   +C+CHLATGD
Sbjct: 3   NVPAAEPVPESPKGV--------RAVLL-----GPPGAGKGTQAPKLAKNFCVCHLATGD 49

Query: 71  MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 130
           MLRA VA+ + LG K K  MD G+LVSD++V+ +I++ ++ P C+ GF+LDGFPRT  QA
Sbjct: 50  MLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQA 109

Query: 131 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 190
           + LD+++EK+ +K+D V+ F+I D++L  RITGR IHP SGR+YH +F PPK P  DD+T
Sbjct: 110 EMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDIT 169

Query: 191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
           GEPLI+R DD    LK RLEA+H QT P+++YYSK+GI + + A + P  V + +  A S
Sbjct: 170 GEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS 229

Query: 251 A 251
            
Sbjct: 230 K 230

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Length = 216

 Score =  352 bits (907), Expect = e-125
 Identities = 97/218 (44%), Positives = 141/218 (64%), Gaps = 5/218 (2%)

Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
            ++L+     G PG+GKGTQ+  I ++Y + H++TGDM RAA+   T LG+KAK  MD+G
Sbjct: 2   NIVLM-----GLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQG 56

Query: 94  ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 153
            LV D++ +GI+ E + K  CQKGF+LDGFPRT  QA  LD +L   GKK+D VLN  ++
Sbjct: 57  NLVPDEVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVE 116

Query: 154 DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH 213
              L +R+TGRWI  + G TYHT F PP V G+ D  G  L QR DD    +K+RL+   
Sbjct: 117 QEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNM 176

Query: 214 KQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           KQT+P++D+YS+KG++  +  ++  ++V  ++   L  
Sbjct: 177 KQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Length = 220

 Score =  352 bits (906), Expect = e-125
 Identities = 113/218 (51%), Positives = 155/218 (71%), Gaps = 6/218 (2%)

Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
           R++LI     GPPG+GKGTQ+P +++ +   HLATGDMLR+ +A  T LG++AK+ MD+G
Sbjct: 6   RMVLI-----GPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQG 60

Query: 94  ELVSDDLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
            LVSDD++V +I + +   P+C+ GFILDGFPRT  QA+KLD+ML++QG  ++K +   +
Sbjct: 61  GLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV 120

Query: 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 212
           DD +L  RITGR IHP+SGR+YH  F PPK    DDVTGE L+QR DD A  LK RL A+
Sbjct: 121 DDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAY 180

Query: 213 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
           H QTEP++D+Y K GI A + A +PP  V +++   L 
Sbjct: 181 HAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Length = 216

 Score =  352 bits (905), Expect = e-125
 Identities = 98/218 (44%), Positives = 143/218 (65%), Gaps = 5/218 (2%)

Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
            L+L+     G PG+GKGTQ   I ++Y + H++TGDM RAA+  +TPLG++AK  +DKG
Sbjct: 2   NLVLM-----GLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKG 56

Query: 94  ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 153
           ELV D++ +GI+ E + K  C++GF+LDGFPRT  QA+ L+E+LE+ GK +D V+N  +D
Sbjct: 57  ELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVD 116

Query: 154 DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH 213
             VL ER+TGR I    G TYH  F PPK PG+ D  G  L QR DD    +  RLE   
Sbjct: 117 KDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNM 176

Query: 214 KQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           KQT P++D+Y +KG +  ++ ++  Q+V ++++  L  
Sbjct: 177 KQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Length = 246

 Score =  343 bits (883), Expect = e-121
 Identities = 87/238 (36%), Positives = 133/238 (55%), Gaps = 13/238 (5%)

Query: 14  SVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLR 73
            VDL TE L     ASK   R +++     GPPGSGKGT    I   + L HL++G  LR
Sbjct: 10  GVDLGTENLYFQSMASKL-LRAVIL-----GPPGSGKGTVCQRIAQNFGLQHLSSGHFLR 63

Query: 74  AAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKL 133
             + A T +G  AK+ ++K  LV D ++  ++   ++     + ++LDGFPRT  QA+ L
Sbjct: 64  ENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRG-QHWLLDGFPRTLGQAEAL 122

Query: 134 DEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 193
           D++      +VD V++  I    L++R++ RWIHP SGR Y+  F PP V G+DDVTGEP
Sbjct: 123 DKIC-----EVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEP 177

Query: 194 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           L+Q++DD    + +RL  +    +PVI+ Y  +G++ Q    +   ++   V    S 
Sbjct: 178 LVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTETN-KIWPYVYTLFSN 234

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Length = 214

 Score =  340 bits (875), Expect = e-120
 Identities = 99/221 (44%), Positives = 140/221 (63%), Gaps = 14/221 (6%)

Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
           R+IL+     G P +GKGTQ+  I ++Y +  ++TGDMLRAAV + + LG +AK+ MD G
Sbjct: 2   RIILL-----GAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAG 56

Query: 94  ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 153
           +LV+D+LV+ ++ E + +  C+ GF+LDGFPRT  QA  + E     G  VD VL F + 
Sbjct: 57  KLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVP 112

Query: 154 DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH 213
           D ++ +RI GR +H  SGR YH KF PPKV G DDVTGE L  RKDD    ++ RL  +H
Sbjct: 113 DELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYH 172

Query: 214 KQTEPVIDYYSKKG-----IVAQLHAEKPPQEVTSEVQKAL 249
           + T P+I YYSK+        A++   KP  EV ++++K L
Sbjct: 173 QMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 230

 Score =  337 bits (867), Expect = e-119
 Identities = 97/235 (41%), Positives = 141/235 (60%), Gaps = 18/235 (7%)

Query: 28  ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAK 87
           A      + LI++   G PG+GKGTQ+  IK+++ +  ++TGDMLRAAV A TPLG++AK
Sbjct: 2   AHHHHHHMRLILL---GAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAK 58

Query: 88  EAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKV 147
             MD+G+LV D L++G++ E +K+  C  G++ DGFPRT  QA  + E     G  +D V
Sbjct: 59  TYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKEA----GVAIDYV 114

Query: 148 LNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKS 207
           L   +  + + ER++GR  HP+SGRTYH KF PPKV G DDVTGEPL+QR DD    +K 
Sbjct: 115 LEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKK 174

Query: 208 RLEAFHKQTEPVIDYYSKKGIVAQLH-----------AEKPPQEVTSEVQKALSA 251
           RL+ +  QT+P+I YY         +                +E+ + V++A  +
Sbjct: 175 RLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Length = 227

 Score =  330 bits (848), Expect = e-116
 Identities = 87/227 (38%), Positives = 136/227 (59%), Gaps = 13/227 (5%)

Query: 25  MKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGI 84
           M  +++   R +++     G PGSGKGT S  I   + L HL++GD+LR  +   T +G+
Sbjct: 1   MGASARL-LRAVIM-----GAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGV 54

Query: 85  KAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKV 144
            AK  +D+G+L+ DD++  +    +K    Q  ++LDGFPRT  QA+ LD        ++
Sbjct: 55  LAKAFIDQGKLIPDDVMTRLALHELKNL-TQYSWLLDGFPRTLPQAEALDRAY-----QI 108

Query: 145 DKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAV 204
           D V+N  +   V+++R+T RWIHP+SGR Y+ +F PPK  G+DD+TGEPLIQR+DD    
Sbjct: 109 DTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPET 168

Query: 205 LKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           +  RL+A+  QT+PV++YY KKG++      +   ++   V   L  
Sbjct: 169 VIKRLKAYEDQTKPVLEYYQKKGVLETFSGTETN-KIWPYVYAFLQT 214

>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, nucleo binding, transferase; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A Length = 206

 Score =  316 bits (813), Expect = e-111
 Identities = 102/216 (47%), Positives = 138/216 (63%), Gaps = 15/216 (6%)

Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
            L+ +     GPPG+GKGTQ+  +  E    H++TGD+LR AV   TPLG KAKE M++G
Sbjct: 2   ILVFL-----GPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERG 56

Query: 94  ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 153
           ELV DDL++ +I+E   K       I DGFPRT  QA+ LDEMLEK+G KVD VL F + 
Sbjct: 57  ELVPDDLIIALIEEVFPKH---GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVP 113

Query: 154 DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH 213
           D V+ ER++GR I+P +G  YH K+ PP         G  +IQR+DD   V+K RLE + 
Sbjct: 114 DEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQREDDKPEVIKKRLEVYR 166

Query: 214 KQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
           +QT P+I+YY KKGI+  + A KP +EV  +V + +
Sbjct: 167 EQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVI 202

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Length = 222

 Score =  314 bits (808), Expect = e-110
 Identities = 72/219 (32%), Positives = 129/219 (58%), Gaps = 16/219 (7%)

Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
           ++++      G P SGKGTQ  +IK +Y L H++ GD+LRA +AA +  G +AKE M+KG
Sbjct: 7   KVMIS-----GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKG 61

Query: 94  ELVSDDLVVGIIDEAMKKPSC-QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
           +LV D++VV ++ E +++P   + G++LDG+PR+  QA  L+ +      + D  +   +
Sbjct: 62  QLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETL----EIRPDTFILLDV 117

Query: 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 212
            D +L ER+ GR + P +G+ YH K++PP+    ++     L QR DDT   +K RLE +
Sbjct: 118 PDELLVERVVGRRLDPVTGKIYHLKYSPPE----NEEIASRLTQRFDDTEEKVKLRLETY 173

Query: 213 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           ++  E ++  Y  + I+ ++  +     V +++ + L +
Sbjct: 174 YQNIESLLSTY--ENIIVKVQGDATVDAVFAKIDELLGS 210

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Length = 223

 Score =  314 bits (806), Expect = e-109
 Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 17/228 (7%)

Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
            +++      GP GSGKGTQ  ++KD+Y L H+ +G + R  +   T LG KAKE +D+G
Sbjct: 2   NILIF-----GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRG 56

Query: 94  ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 153
           +LV DD+ + ++ E + +   + G++LDGFPR  VQAQKL E L+++G K++ V+   + 
Sbjct: 57  DLVPDDITIPMVLETL-ESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLP 115

Query: 154 DAVLEERITGRWIHPSSGRTYHTKFAPPKVP--GVDDVTGEPLIQRKDDTA-AVLKSRLE 210
             V + RI GR I  ++    +  F     P   V  V G  L  R DD     +  R +
Sbjct: 116 REVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHD 175

Query: 211 AFHKQTEPVI---DYYSKKG-----IVAQLHAEKPPQEVTSEVQKALS 250
            ++   +  +    YY         +  +L  E     +   +   L+
Sbjct: 176 IYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQLA 223

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Length = 201

 Score =  253 bits (649), Expect = 5e-86
 Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 38/217 (17%)

Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
           R++L+     GPPG+GKGTQ+  + ++  +  ++TG++ R  +   T LG++AK  +D G
Sbjct: 22  RVLLL-----GPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAG 76

Query: 94  ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 153
           +LV  DL   ++D+ +  P    GFILDG+PR+  QA+ L EMLE++G  +D VL F + 
Sbjct: 77  DLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVS 136

Query: 154 DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH 213
           + VL ER+ GR                                R DDT  V+ +R++ + 
Sbjct: 137 EEVLLERLKGR-------------------------------GRADDTDDVILNRMKVYR 165

Query: 214 KQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
            +T P+++YY  +     + A     EV +   +AL 
Sbjct: 166 DETAPLLEYYRDQLK--TVDAVGTMDEVFARALRALG 200

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Length = 186

 Score =  242 bits (621), Expect = 4e-82
 Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 37/216 (17%)

Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
            +I +     GPPG+GKGTQ+  +  E     L+TGD+LR  VA  TPLG + +  M++G
Sbjct: 6   AVIFL-----GPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERG 60

Query: 94  ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 153
           +LV DDL++ +I E +      +  I DGFPRT  QA+ LD +L + G ++  V+   + 
Sbjct: 61  DLVPDDLILELIREELA-----ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVP 115

Query: 154 DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH 213
           +  L  RI  R                             L  R DD    ++ RLE + 
Sbjct: 116 EEELVRRILRR---------------------------AELEGRSDDNEETVRRRLEVYR 148

Query: 214 KQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
           ++TEP++ YY  +G++ ++     P EV + ++ AL
Sbjct: 149 EKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL 184

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Length = 196

 Score =  234 bits (599), Expect = 2e-78
 Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 32/214 (14%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           I+++ G PGSGKGTQ   I  +Y   HL+TGD+LR+ V++ +  G K  E M+KG+LV  
Sbjct: 11  IIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPL 70

Query: 99  DLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 157
           + V+ ++ +AM  K +  KGF++DG+PR   Q ++ +  +     +   +L        +
Sbjct: 71  ETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRI----GQPTLLLYVDAGPETM 126

Query: 158 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 217
            +R+  R      G T                       R DD    +K RLE ++K TE
Sbjct: 127 TQRLLKR------GETS---------------------GRVDDNEETIKKRLETYYKATE 159

Query: 218 PVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           PVI +Y K+GIV +++AE     V S+V   L A
Sbjct: 160 PVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDA 193

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Length = 199

 Score =  230 bits (588), Expect = 8e-77
 Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 32/214 (14%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           I+++ G PGSGKGTQ   + ++Y   HL+TG++LR  +A+++      ++ M++G+LV  
Sbjct: 14  IIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPS 73

Query: 99  DLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 157
            +V+ ++ EAM       +GF++DG+PR   Q ++    +         V+        +
Sbjct: 74  GIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRI----GDPQLVICMDCSADTM 129

Query: 158 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 217
             R+          R+                         DDT   +  RLEA+++ + 
Sbjct: 130 TNRLLQM------SRSS---------------------LPVDDTTKTIAKRLEAYYRASI 162

Query: 218 PVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           PVI YY  K  + +++AE  P++V  ++  A+ +
Sbjct: 163 PVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDS 196

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194

 Score =  225 bits (576), Expect = 4e-75
 Identities = 57/213 (26%), Positives = 93/213 (43%), Gaps = 29/213 (13%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           +V++ G PGSGKGTQ   I  ++   HL+ GD+LR    + +  G      +  GE+V  
Sbjct: 8   VVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPS 67

Query: 99  DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 158
            + V ++  A+      K F++DGFPR E      +E ++        VL F   + V+ 
Sbjct: 68  IVTVKLLKNAIDANQG-KNFLVDGFPRNEENNNSWEENMKDFV-DTKFVLFFDCPEEVMT 125

Query: 159 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 218
           +R+  R      G +                       R DD    +K R   F+ QT+ 
Sbjct: 126 QRLLKR------GESS---------------------GRSDDNIESIKKRFNTFNVQTKL 158

Query: 219 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           VID+Y+K   V  + A +   EV ++V+    +
Sbjct: 159 VIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Length = 196

 Score =  218 bits (558), Expect = 2e-72
 Identities = 53/217 (24%), Positives = 102/217 (47%), Gaps = 33/217 (15%)

Query: 38  IIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA-AKTPLGIKAKEAMDKGELV 96
           ++V++ G PG+GKGTQ   I ++Y   HL+ G++LR       +  G   ++ + +G++V
Sbjct: 4   LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIV 63

Query: 97  SDDLVVGIIDEAMKKP----SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
             ++ + ++   M +     + +  F++DGFPR +   Q  ++ ++ +   V  VL F  
Sbjct: 64  PVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKA-DVSFVLFFDC 122

Query: 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 212
           ++ +  ER   R      G++                       R DD    L+ R++ +
Sbjct: 123 NNEICIERCLER------GKSS---------------------GRSDDNRESLEKRIQTY 155

Query: 213 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
            + T+P+ID Y + G V ++ A K   EV  EV +  
Sbjct: 156 LQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIF 192

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203

 Score =  215 bits (551), Expect = 3e-71
 Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 34/214 (15%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA-AKTPLGIKAKEAMDKGELVS 97
           ++++ G PG+GKGTQ   +  +Y   HL+ GD+LRA    A +  G   K  + +G++V 
Sbjct: 17  VIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVP 76

Query: 98  DDLVVGIIDEAMKKP--SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDA 155
            ++ + ++  A+     + +  F++DGFPR   QA   +  +     +   +L F   + 
Sbjct: 77  QEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI----VESKFILFFDCPED 132

Query: 156 VLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQ 215
           ++ ER+  R      G+T                       R DD    +K R   F + 
Sbjct: 133 IMLERLLER------GKTS---------------------GRSDDNIESIKKRFNTFKET 165

Query: 216 TEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
           + PVI+Y+  K  V ++  ++  ++V  +VQ A+
Sbjct: 166 SMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAI 199

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score =  112 bits (282), Expect = 4e-31
 Identities = 21/190 (11%), Positives = 50/190 (26%), Gaps = 12/190 (6%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           +  + GP G GK T    +  +        GD++   V        ++ E +    L   
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLA---LTWK 60

Query: 99  DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 158
           ++    ++  + +       +LD     +        +  K      + +    +   L 
Sbjct: 61  NITDLTVNFLLAQNDV----VLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELL 116

Query: 159 ERITGRWIHPSSGRTYHTKF-----APPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH 213
            R   R      G                     + +        D    +  +    F 
Sbjct: 117 RRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDIVKNLKTNPRFIFC 176

Query: 214 KQTEPVIDYY 223
              +P+  ++
Sbjct: 177 MAGDPLEHHH 186

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 69.1 bits (169), Expect = 9e-15
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 8/127 (6%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVS 97
           ++ + G PGSGK   + ++K E     +   D++R   + +   G +  +   +  E+  
Sbjct: 3   VILITGMPGSGKSEFAKLLK-ERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYG 61

Query: 98  DDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 157
           D +V  +  E +   +     + DG  R+  +     E  ++       ++       + 
Sbjct: 62  DGVVARLCVEELGTSNH-DLVVFDGV-RSLAEV----EEFKRLLGDSVYIVAVHSPPKIR 115

Query: 158 EERITGR 164
            +R+  R
Sbjct: 116 YKRMIER 122

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 8/166 (4%)

Query: 20  ELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA-TGDMLRAAVAA 78
             LR +    K  K+ I I+  L G  G+GK T   I + E+    +   GD  R+    
Sbjct: 17  RNLRSLTRGKKSSKQPIAIL--LGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPH 74

Query: 79  KTPLGIK-AKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEML 137
              L  +  K++++  +  +  +V  ++ +           +++G  RT    +K  ++L
Sbjct: 75  YLELQQEYGKDSVEYTKDFAGKMVESLVTKLSSL---GYNLLIEGTLRTVDVPKKTAQLL 131

Query: 138 EKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKV 183
           + +G +V ++   A    +       R+           +  P + 
Sbjct: 132 KNKGYEV-QLALIATKPELSYLSTLIRYEELYIINPNQARATPKEH 176

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 7/131 (5%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           ++ + G P +GK T S  +     L  L+  D  +  +          +E   +    + 
Sbjct: 7   LIIVTGHPATGKTTLSQALATGLRLPLLSK-DAFKEVMFDGLGWSD--REWSRRVGATAI 63

Query: 99  DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 158
            ++       ++     +  I++   R ++  +++  +         ++        VL 
Sbjct: 64  MMLYHTAATILQ---SGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIR-CVASGDVLV 119

Query: 159 ERITGRWIHPS 169
           ERI  R    +
Sbjct: 120 ERILSRIAQGA 130

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 13/166 (7%)

Query: 33  KRLILIIVWLAGPPGSGKGTQS-PIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD 91
           K++IL      G PGSGK T +   I       ++   D  R ++ A         +   
Sbjct: 2   KKIIL----TIGCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERD--EYKYTK 54

Query: 92  KGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA 151
           K E +   +        +      KG I+        +    +   ++ G KV +   F 
Sbjct: 55  KKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKV-EHKVFD 113

Query: 152 IDDAVLEERITGRWIHPSSG---RTYHTKF-APPKVPGVDDVTGEP 193
           +    L +R + R          R+ +        +P  +   G+P
Sbjct: 114 VPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKP 159

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Length = 287

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 12/170 (7%)

Query: 16  DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA-TGDMLRA 74
           D + EL++  K    P          L G PGSGK +    I +E     +    D  + 
Sbjct: 18  DNLEELIQGKKAVESP------TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 71

Query: 75  AVAAKTPLGIKA-KEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKL 133
                  L     K+ +      S+ +   II     +       +++G  RT     + 
Sbjct: 72  QHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ---GYNLVIEGTGRTTDVPIQT 128

Query: 134 DEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKV 183
             ML+ +G +   +   A+           R+    +      +  P + 
Sbjct: 129 ATMLQAKGYETK-MYVMAVPKINSYLGTIERYETMYADDPMTARATPKQA 177

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 30/136 (22%), Positives = 46/136 (33%), Gaps = 22/136 (16%)

Query: 29  SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKE 88
             P+  L+  I+ L G PG GK T    +  +  L ++  GD     +A +  L     E
Sbjct: 4   GSPEFMLLPNIL-LTGTPGVGKTTLGKELASKSGLKYINVGD-----LAREEQLYDGYDE 57

Query: 89  AMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVL 148
             D   L  D +V     + +     + G I+D                    +    V 
Sbjct: 58  EYDCPILDEDRVV-----DELDNQMREGGVIVDYHGCDFFPE-----------RWFHIVF 101

Query: 149 NFAIDDAVLEERITGR 164
               D  VL ER+  R
Sbjct: 102 VLRTDTNVLYERLETR 117

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Length = 184

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 19/137 (13%)

Query: 29  SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE-YCLCHLATGDMLRAAVAAKTPLGIKAK 87
              ++   + I+ + G PG+GK + + +I  E     HL  G      +  +     +  
Sbjct: 3   GSMEQPKGINIL-ITGTPGTGKTSMAEMIAAELDGFQHLEVGK-----LVKENHFYTEYD 56

Query: 88  EAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKV 147
             +D   +   D    ++D        +   ++D         +               V
Sbjct: 57  TELDTHIIEEKDEDR-LLDFMEPIMVSRGNHVVDYHSSELFPER-----------WFHMV 104

Query: 148 LNFAIDDAVLEERITGR 164
           +       VL ER+T R
Sbjct: 105 VVLHTSTEVLFERLTKR 121

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 7/136 (5%)

Query: 33  KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK 92
           K++IL      G PGSGK T +     +    +    D  R ++ A         +   K
Sbjct: 2   KKIIL----TIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERD--EYKYTKK 55

Query: 93  GELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
            E +   +        +      KG I+        +    +   ++ G KV +   F +
Sbjct: 56  KEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKV-EHKVFDV 114

Query: 153 DDAVLEERITGRWIHP 168
               L +R + R    
Sbjct: 115 PWTELVKRNSKRGTKA 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	100.0
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	100.0
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	100.0
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	100.0
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	100.0
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	100.0
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	100.0
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	100.0
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	100.0
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	100.0
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	100.0
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	100.0
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.97
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.96
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.95
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.94
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.94
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.93
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.93
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.93
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.92
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.8
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.73
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.72
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.71
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.7
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.69
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.68
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.67
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.67
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.67
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.67
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.66
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.66
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.65
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.64
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.64
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.64
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.63
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.62
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.62
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.62
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.61
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.61
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.61
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.61
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.58
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.57
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.57
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.57
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.56
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.56
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.55
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.55
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	99.55
1via_A	175	Shikimate kinase; structural genomics, transferase	99.54
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.54
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.54
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.53
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.53
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.52
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.52
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.51
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.51
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.5
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.49
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.48
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.47
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.46
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.44
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.43
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.42
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.38
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.37
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.36
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.36
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.35
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.35
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.34
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.34
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.31
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.26
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.23
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.22
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.19
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.17
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.14
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	99.14
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.04
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.0
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	98.93
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.91
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.9
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.88
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.87
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.84
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.84
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.81
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	98.8
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.8
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.75
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.7
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.68
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	98.67
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	98.64
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.56
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.55
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.46
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.41
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	98.41
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.39
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	98.39
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	98.37
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.35
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.16
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.15
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.05
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	98.02
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.01
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	97.95
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.95
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.91
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.9
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.86
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.8
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.8
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.73
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.7
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.66
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	97.65
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.61
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.6
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.6
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.55
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.53
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.52
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.51
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.49
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.48
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.44
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.39
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.39
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.38
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.38
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.37
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.37
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.37
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.36
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.33
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.32
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.3
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.29
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.29
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.27
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.25
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.24
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.24
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.21
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.2
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.2
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.19
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.19
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.18
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.15
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.14
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.14
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.13
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.12
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.1
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.08
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.08
3co5_A	143	Putative two-component system transcriptional RES	97.05
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.02
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.01
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.0
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.98
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.98
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.97
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.95
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.91
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.9
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.88
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.88
3bos_A	242	Putative DNA replication factor; P-loop containing	96.86
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.84
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.82
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	96.8
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.79
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.77
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.77
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.77
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.76
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.74
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.73
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.73
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.73
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.73
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.72
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.71
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.71
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.67
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.63
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.59
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.57
3pvs_A	447	Replication-associated recombination protein A; ma	96.54
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.53
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.53
2qgz_A	308	Helicase loader, putative primosome component; str	96.53
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.52
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.51
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.51
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.48
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.48
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.47
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.47
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.45
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.45
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.45
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.41
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.4
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.39
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.37
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.35
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.34
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.33
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.32
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.31
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.31
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.3
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.28
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.27
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.25
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.24
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.24
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.23
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.22
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.21
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.19
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.19
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.14
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.12
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.1
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.09
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.07
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.07
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.07
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.06
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.03
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.03
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.01
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.0
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.98
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.98
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.97
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.97
2og2_A	359	Putative signal recognition particle receptor; nuc	95.93
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.93
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.93
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.91
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.9
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.9
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.89
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.89
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.89
1g6h_A	257	High-affinity branched-chain amino acid transport	95.87
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.87
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.87
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.86
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.86
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.86
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.85
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.84
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.8
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.8
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.78
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.78
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.77
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.76
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.76
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.75
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.74
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.74
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.73
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.72
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.71
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	95.71
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.71
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.7
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.7
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.68
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.67
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.66
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.66
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.64
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.64
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.64
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.63
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.63
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.63
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.63
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	95.61
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.61
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.6
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.6
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.6
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.59
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.58
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.58
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.57
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.57
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.56
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.53
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.53
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.52
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.52
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.51
2fna_A	357	Conserved hypothetical protein; structural genomic	95.51
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.5
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.5
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.49
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.49
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.48
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.47
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.47
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.47
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.46
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.45
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.43
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.41
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.41
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.4
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.4
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.39
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.39
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.39
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.38
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.38
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.38
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.36
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	95.35
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.34
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.34
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.33
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.32
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	95.32
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.32
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.32
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.29
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	95.29
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.29
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.29
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.28
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.27
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.27
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.27
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.26
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.25
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.25
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.25
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.24
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.23
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.22
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.22
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.22
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.21
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.2
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.19
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.18
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.18
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.18
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.16
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	95.16
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.15
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.15
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.12
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.11
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.11
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.1
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.09
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.08
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	95.06
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.05
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	95.04
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.04
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.04
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.03
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.03
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.03
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.0
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	94.99
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.99
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	94.99
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	94.98
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	94.98
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.97
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	94.97
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.94
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	94.94
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	94.93
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	94.92
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.91
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	94.91
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	94.91
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	94.9
2fh5_B	214	SR-beta, signal recognition particle receptor beta	94.87
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	94.83
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.82
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.82
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.79
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	94.78
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	94.74
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	94.73
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.72
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.71
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	94.7
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	94.7
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	94.7
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	94.7
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	94.69
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	94.68
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.68
2xxa_A	433	Signal recognition particle protein; protein trans	94.66
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.65
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	94.65
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	94.64
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.61
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	94.61
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.61
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	94.6
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	94.6
3llu_A	196	RAS-related GTP-binding protein C; structural geno	94.6
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.59
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.59
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.59
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	94.58
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	94.58
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	94.55
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	94.54
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	94.54
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.54
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	94.53
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.52
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.49
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.48
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	94.47
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	94.46
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	94.39
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	94.36
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.32
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	94.32
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.31
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	94.26
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	94.25
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	94.23
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.23
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	94.22
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	94.22
1u94_A	356	RECA protein, recombinase A; homologous recombinat	94.21
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.19
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.17
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.16
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	94.15
2z43_A	324	DNA repair and recombination protein RADA; archaea	94.15
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.1
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	94.1
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.07
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	94.07
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.06
3io5_A	333	Recombination and repair protein; storage dimer, i	94.04
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.03
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	94.03
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	94.01
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	93.99
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.98
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	93.91
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	93.89
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	93.87
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	93.83
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	93.83
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	93.83
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	93.83
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	93.81
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	93.81
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	93.77
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	93.77
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	93.75
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	93.72
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	93.65
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	93.63
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	93.62
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	93.57
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	93.54
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	93.49
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	93.47
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.47
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	93.4

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=100.00  E-value=1.1e-43  Score=288.95  Aligned_cols=211  Identities=46%  Similarity=0.829  Sum_probs=183.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~  110 (251)
                      ..|+..++     |+|||||||+|+.|+++||++++++++++++.+..++++|+.+++++.+|..+|++++..++.+++.
T Consensus         7 ~~~~~~~~-----G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~   81 (230)
T 3gmt_A            7 HHMRLILL-----GAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLK   81 (230)
T ss_dssp             --CEEEEE-----CCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred             cccceeeE-----CCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence            46788899     9999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529          111 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT  190 (251)
Q Consensus       111 ~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~  190 (251)
                      ..++.+|||+||||++..|++.|.+    .+..++.+|+|++|++++.+|+..|+.|+.||+.|+..|+||..+++|+.|
T Consensus        82 ~~~~~~g~ILDGfPRt~~Qa~~L~~----~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~  157 (230)
T 3gmt_A           82 EADCANGYLFDGFPRTIAQADAMKE----AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVT  157 (230)
T ss_dssp             SGGGTTCEEEESCCCSHHHHHHHHH----TTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTT
T ss_pred             CcccCCCeEecCCCCcHHHHHHHHH----hCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCc
Confidence            8767789999999999999987653    456789999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhC-----------CcEEEEcCCCChhHHHHHHHHHhc
Q 025529          191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKK-----------GIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~-----------~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                      +++|.+|.+|+++.+++|+..|++...++.+||.+.           +.++.|||+.++++|++.|.++|.
T Consensus       158 g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~  228 (230)
T 3gmt_A          158 GEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQV  228 (230)
T ss_dssp             CCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC----------------
T ss_pred             cCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999973           789999999999999999998875

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=100.00  E-value=5e-43  Score=282.70  Aligned_cols=204  Identities=50%  Similarity=0.855  Sum_probs=193.0

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+|+     |||||||+|+|+.|+++||++||++++++|+++..++++|..+++++.+|..+|++++..++.+++.. 
T Consensus         1 M~Iil~-----GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~-   74 (206)
T 3sr0_A            1 MILVFL-----GPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK-   74 (206)
T ss_dssp             CEEEEE-----CSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS-
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc-
Confidence            678888     99999999999999999999999999999999999999999999999999999999999999988754 


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                        .++||+||||++..|++.|...+...+..++.+|+|+||++++.+|+..|+.|+.||+.|+..++||.       |++
T Consensus        75 --~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~-------~g~  145 (206)
T 3sr0_A           75 --HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGV  145 (206)
T ss_dssp             --SSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCC-------TTC
T ss_pred             --CCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCC-------CCc
Confidence              35899999999999999999998888889999999999999999999999999999999999999985       567


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA  251 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~  251 (251)
                      ++.+|.+|+++.+++|+..|++...++.+||.+.+.++.|||+.++++|+++|.++|.+
T Consensus       146 ~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e  204 (206)
T 3sr0_A          146 KVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD  204 (206)
T ss_dssp             CCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred             eecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            78899999999999999999999999999999999999999999999999999999863

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=100.00  E-value=1.2e-41  Score=281.94  Aligned_cols=239  Identities=49%  Similarity=0.893  Sum_probs=222.9

Q ss_pred             cccCCCCchhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHH
Q 025529            7 ANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKA   86 (251)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i   86 (251)
                      +++.+.++.+++.++.+++.+...++++|+|+     |||||||||+|+.|++++|++++++++++++.+..+++.|..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~-----G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i   78 (243)
T 3tlx_A            4 ENLENFSTIDLLNELKRRYACLSKPDGRYIFL-----GAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKI   78 (243)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTSCCEEEEEE-----CCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHH
T ss_pred             chhhhcchHHHHHHHHHHHHhccCCCcEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHH
Confidence            45677899999999999998777789999999     9999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025529           87 KEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI  166 (251)
Q Consensus        87 ~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~  166 (251)
                      ++++.+|..+++..+..++...+....+.++||+||||++..+...|.+.+...+..|+.+|+|++|++++.+|+..|+.
T Consensus        79 ~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~  158 (243)
T 3tlx_A           79 KNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLI  158 (243)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCC
Confidence            99999999999999999999988776667899999999999999999888887788899999999999999999999999


Q ss_pred             CCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHH
Q 025529          167 HPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQ  246 (251)
Q Consensus       167 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~  246 (251)
                      |+.||+.||..|+||..++.|+.|++++..|.+++.+.+++|+..|+..+.++.+||...+.++.||++.++++|++.|.
T Consensus       159 ~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~  238 (243)
T 3tlx_A          159 HKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKIS  238 (243)
T ss_dssp             ETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHH
T ss_pred             CcccCcccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhc
Q 025529          247 KALS  250 (251)
Q Consensus       247 ~~l~  250 (251)
                      ++|+
T Consensus       239 ~~l~  242 (243)
T 3tlx_A          239 QHID  242 (243)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            9885

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=100.00  E-value=6.8e-38  Score=254.63  Aligned_cols=213  Identities=46%  Similarity=0.818  Sum_probs=201.3

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+|+     |+|||||||+|+.|++++|++++++|+++++.+.++++.+..+++++..+..+++..+..++...+...
T Consensus         1 m~I~l~-----G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~   75 (216)
T 3dl0_A            1 MNLVLM-----GLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKD   75 (216)
T ss_dssp             CEEEEE-----CSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSG
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Confidence            457777     999999999999999999999999999999999999999999999999999999999999999888776


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      ....++|+||+|.+..+...+...+...+..|+.+|+|++|++++.+|+..|+.|+.||+.|+..++||..++.|+.|+.
T Consensus        76 ~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~  155 (216)
T 3dl0_A           76 DCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGG  155 (216)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred             cccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccc
Confidence            66789999999999999999888887777889999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                      ++..|.+++.+.+++|+..|+....++.+||.+.+.++.||++.+++++++.|.+.|+
T Consensus       156 ~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~  213 (216)
T 3dl0_A          156 ELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLG  213 (216)
T ss_dssp             BEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHG
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988889999999999999999999886

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=100.00  E-value=3.1e-37  Score=250.62  Aligned_cols=214  Identities=45%  Similarity=0.810  Sum_probs=201.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+|+     |+|||||||+|+.|++++|++++++|+++++.+.++++.+..+++++..+..+++..+..++...+...
T Consensus         1 m~I~l~-----G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~   75 (216)
T 3fb4_A            1 MNIVLM-----GLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKD   75 (216)
T ss_dssp             CEEEEE-----CSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSG
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Confidence            456777     999999999999999999999999999999999999999999999999999999999999999888776


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      ....++|+||+|.+..+...+...+...+..++.+|+|++|++++.+|+..|+.|+.+|+.|+..++||..++.|+.|++
T Consensus        76 ~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~  155 (216)
T 3fb4_A           76 DCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGG  155 (216)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccC
Confidence            66779999999999999998888877777889999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA  251 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~  251 (251)
                      ++..|.+++.+.+++|+..|+....++.+||.+.+.++.||++.+++++++.|.+.|++
T Consensus       156 ~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3fb4_A          156 ELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG  214 (216)
T ss_dssp             BEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999988999999999999999999998853

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=7.9e-37  Score=248.83  Aligned_cols=216  Identities=50%  Similarity=0.903  Sum_probs=196.5

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA  108 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~  108 (251)
                      +.++++|+|+     |+|||||||+++.|++++|++++++|+++++....+++.|..+++++..|..+++.....++...
T Consensus         2 ~~~~~~I~l~-----G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~   76 (217)
T 3be4_A            2 NSKKHNLILI-----GAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEK   76 (217)
T ss_dssp             GGGCCEEEEE-----ECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             CCCceEEEEE-----CCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHH
Confidence            3456889999     99999999999999999999999999999998888899999999999999999999999998888


Q ss_pred             HcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529          109 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD  188 (251)
Q Consensus       109 l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~  188 (251)
                      +.......++|+||||++..+...+..++...+..|+.+|+|++|++++.+|+..|+.|+.+|+.||..++||..++.|+
T Consensus        77 l~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~  156 (217)
T 3be4_A           77 FDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDD  156 (217)
T ss_dssp             HHTTTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCT
T ss_pred             HhccccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccc
Confidence            77666677999999999998888887766666678999999999999999999999989999999999999999999999


Q ss_pred             CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                      .|+.++..|.++..+.+++|+..|++...++.++|.+.+.++.||++.++++|++.|.+.|
T Consensus       157 ~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  217 (217)
T 3be4_A          157 VTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL  217 (217)
T ss_dssp             TTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence            9999999998889999999999999999999999987778999999999999999998764

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=100.00  E-value=5.2e-37  Score=248.76  Aligned_cols=186  Identities=31%  Similarity=0.526  Sum_probs=167.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM  109 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l  109 (251)
                      ++++.|+|+     |||||||+|+|+.|+++||++||++++++|+++..++++|..+++++..|..+|++++.+++.+++
T Consensus        27 ~k~kiI~ll-----GpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l  101 (217)
T 3umf_A           27 AKAKVIFVL-----GGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAM  101 (217)
T ss_dssp             TSCEEEEEE-----CCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             cCCcEEEEE-----CCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            567778889     999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCC-CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529          110 KKP-SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD  188 (251)
Q Consensus       110 ~~~-~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~  188 (251)
                      ... ...+|||+||||++..|+..|...    ...++.+|+|+||++++.+|+..|+.+                     
T Consensus       102 ~~~~~~~~g~ilDGfPRt~~Qa~~l~~~----~~~~~~vi~l~v~~e~~~~Rl~~R~~~---------------------  156 (217)
T 3umf_A          102 IKLVDKNCHFLIDGYPRELDQGIKFEKE----VCPCLCVINFDVSEEVMRKRLLKRAET---------------------  156 (217)
T ss_dssp             HHHTTTCSEEEEETBCSSHHHHHHHHHH----TCCCSEEEEEECCHHHHHHHHSCC------------------------
T ss_pred             hhccccccCcccccCCCcHHHHHHHHHh----CCccCEEEeccCCHHHHHHHHhccccc---------------------
Confidence            654 455799999999999999988764    367899999999999999999998521                     


Q ss_pred             CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529          189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA  251 (251)
Q Consensus       189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~  251 (251)
                            ..|.+|+++.+++|+..|++...++.+||.+.+.++.|||+.++++|+++|.++|++
T Consensus       157 ------~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k  213 (217)
T 3umf_A          157 ------SNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK  213 (217)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             ------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence                  246788899999999999999999999999999999999999999999999998864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=100.00  E-value=4.1e-35  Score=241.18  Aligned_cols=217  Identities=53%  Similarity=0.954  Sum_probs=197.7

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA  108 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~  108 (251)
                      +.++++|+|+     |+|||||||+++.|+++|++.++++++++++.+..+++.+..+++++..+..++++....++...
T Consensus        13 ~~~~~~I~l~-----G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~   87 (233)
T 1ak2_A           13 SPKGVRAVLL-----GPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKN   87 (233)
T ss_dssp             -CCCCEEEEE-----CCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCCCeEEEEE-----CCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHH
Confidence            4567889999     99999999999999999999999999999998888899999999999999999999999999888


Q ss_pred             HcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529          109 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD  188 (251)
Q Consensus       109 l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~  188 (251)
                      +.......++|+||||++..+...|.+++...+..++.+|+|++|++++.+|+..|..|+.+|+.|+..|.||..++.++
T Consensus        88 l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~  167 (233)
T 1ak2_A           88 LETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDD  167 (233)
T ss_dssp             HTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCT
T ss_pred             HhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCccccccc
Confidence            87655557899999999998888887776665667899999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                      .|+.++..|.++..+.+++|+..|+....++.++|...+.++.||++.++++|++.|.+.|+
T Consensus       168 ~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~  229 (233)
T 1ak2_A          168 ITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS  229 (233)
T ss_dssp             TTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             cccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence            88988888988889999999999999999999999877789999999999999999998874

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=100.00  E-value=1.9e-34  Score=235.01  Aligned_cols=216  Identities=52%  Similarity=0.926  Sum_probs=191.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM  109 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l  109 (251)
                      +++++|+|+     |+|||||||+++.|+++++++++++|+++++....+++.|..+++++..|..+++..+..++...+
T Consensus         2 ~~~~~I~l~-----G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l   76 (220)
T 1aky_A            2 SESIRMVLI-----GPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDEL   76 (220)
T ss_dssp             -CCCEEEEE-----CCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CCCcEEEEE-----CCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence            467889999     999999999999999999999999999999988889999999999999999999999888888877


Q ss_pred             c-CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529          110 K-KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD  188 (251)
Q Consensus       110 ~-~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~  188 (251)
                      . ......++|+||||++..+...+.+++...+..|+.+|+|++|++++.+|+..|..++.+|+.|+..++||..++.+.
T Consensus        77 ~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~  156 (220)
T 1aky_A           77 TNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDD  156 (220)
T ss_dssp             HHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCT
T ss_pred             HhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccc
Confidence            6 433456899999999998888887776666778999999999999999999999889999999999999998875333


Q ss_pred             CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                      ..+.++..|.++..+.+++|+..|+....++.++|...+.++.||++.++++|++.|.+.|+
T Consensus       157 ~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  218 (220)
T 1aky_A          157 VTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG  218 (220)
T ss_dssp             TTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence            33456778888889999999999999999999999877789999999999999999999885

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=100.00  E-value=1.6e-34  Score=234.63  Aligned_cols=209  Identities=47%  Similarity=0.831  Sum_probs=189.4

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+|+     |+|||||||+++.|++++|++++++|+++++.+..+++.|..+++++..+..+++..+..++...+...
T Consensus         1 m~I~l~-----G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~   75 (214)
T 1e4v_A            1 MRIILL-----GAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQE   75 (214)
T ss_dssp             CEEEEE-----ESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSG
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence            467777     999999999999999999999999999999988888999999999999999999999999998888765


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      .+..++|+||||++..+...|.    ..+..|+.+|+|++|++++.+|+..|..++.+|+.|+..+.||..++.|+.|+.
T Consensus        76 ~~~~~~i~dg~~~~~~~~~~l~----~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~  151 (214)
T 1e4v_A           76 DCRNGFLLDGFPRTIPQADAMK----EAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGE  151 (214)
T ss_dssp             GGGGCEEEESCCCSHHHHHHHH----HTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred             ccCCCEEEeCCCCCHHHHHHHH----hcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCcccccccccc
Confidence            5556899999999988776553    344678999999999999999999998889999999999999999999999999


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhC-----CcEEEEcCCCChhHHHHHHHHHhc
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKK-----GIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~-----~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                      ++..|.++..+.+++|+..|+..+.++.++|.+.     +.++.|||+.++++|++.|.+.|+
T Consensus       152 ~l~~r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l~  214 (214)
T 1e4v_A          152 ELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG  214 (214)
T ss_dssp             BCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHHC
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999864     579999999999999999998873

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=100.00  E-value=2.1e-34  Score=235.45  Aligned_cols=212  Identities=33%  Similarity=0.580  Sum_probs=188.7

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+|+     |+|||||||+++.|++++|++++++|+++++.+..+++.|..+++++..|..+++..+..++...+...
T Consensus         1 m~I~l~-----G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~   75 (223)
T 2xb4_A            1 MNILIF-----GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESK   75 (223)
T ss_dssp             CEEEEE-----CCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcc
Confidence            457777     999999999999999999999999999999877778889999999999999999998888887776543


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC-CCceecccCCCCCCCC-CCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS-SGRTYHTKFAPPKVPG-VDDVT  190 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~-~~~~~~~~~~~p~~~~-~~~~~  190 (251)
                      . ..++|+||+|++..+...|..++...+..|+.+|+|++|++++.+|+..|..++. ||+.|+..++||..++ +|+.|
T Consensus        76 ~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~  154 (223)
T 2xb4_A           76 G-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVC  154 (223)
T ss_dssp             C-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTT
T ss_pred             c-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccc
Confidence            3 5689999999998888877766555667899999999999999999999987766 9999999999999988 89999


Q ss_pred             CCCcccCCCCcHH-HHHHHHHHHHhccHHHHH---HHhh-----CCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          191 GEPLIQRKDDTAA-VLKSRLEAFHKQTEPVID---YYSK-----KGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       191 ~~~~~~r~~~~~~-~~~~r~~~y~~~~~~~~~---~~~~-----~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                      +.++..|.+++.+ .+++|+..|++...++.+   +|..     .+.++.||++.++++|++.|.+.|+
T Consensus       155 ~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l~  223 (223)
T 2xb4_A          155 GGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQLA  223 (223)
T ss_dssp             CCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHHC
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence            9999999888888 999999999999989898   8886     5779999999999999999998873

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=100.00  E-value=5.5e-32  Score=221.56  Aligned_cols=209  Identities=41%  Similarity=0.737  Sum_probs=184.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM  109 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l  109 (251)
                      .++++|+|+     |+|||||||+++.|++++|+.++++|++++.....+++.|..+++++..|..+++.....++...+
T Consensus         5 ~~~~~I~l~-----G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l   79 (227)
T 1zd8_A            5 ARLLRAVIM-----GAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHEL   79 (227)
T ss_dssp             --CCEEEEE-----ECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred             ccCcEEEEE-----CCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHH
Confidence            356789999     999999999999999999999999999999988888999999999999998899888877777766


Q ss_pred             cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCC
Q 025529          110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV  189 (251)
Q Consensus       110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~  189 (251)
                      ... ...++|+|++|.+..+...+..+     ..++.+|+|++|++++.+|+..|+.++.+|+.|+..++||..++.|+.
T Consensus        80 ~~~-~~~~~vid~~~~~~~~~~~l~~~-----~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~  153 (227)
T 1zd8_A           80 KNL-TQYSWLLDGFPRTLPQAEALDRA-----YQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDL  153 (227)
T ss_dssp             HTC-TTSCEEEESCCCSHHHHHHHHTT-----SCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTT
T ss_pred             hcc-cCCCEEEeCCCCCHHHHHHHHHh-----cCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCccccccc
Confidence            543 34689999999988776655432     457899999999999999999998888889999999999999999999


Q ss_pred             CCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          190 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       190 ~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                      |+.++..|.++..+.+++|+..|+....++.++|...+.++.||++ +++++++.|.+.|.
T Consensus       154 ~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~  213 (227)
T 1zd8_A          154 TGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQ  213 (227)
T ss_dssp             TCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHT
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHH
Confidence            9999999988889999999999999999999999877789999999 99999999998875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.97  E-value=5.4e-30  Score=208.94  Aligned_cols=205  Identities=35%  Similarity=0.675  Sum_probs=174.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~  110 (251)
                      +++.|+|+     |+|||||||+++.|++++++.++++|++++.....+++.|..+++++.+|..+++..+..++...+.
T Consensus         4 ~~~~I~l~-----G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~   78 (222)
T 1zak_A            4 DPLKVMIS-----GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLR   78 (222)
T ss_dssp             CSCCEEEE-----ESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHh
Confidence            56789999     9999999999999999999999999999999888888999999999999999999888887776654


Q ss_pred             CCCC-CCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCC
Q 025529          111 KPSC-QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV  189 (251)
Q Consensus       111 ~~~~-~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~  189 (251)
                      .... ..++|+||+|++..+...+.    ..+..|+++|+|++|++++.+|+..|..|+.+|+.|+..+.||..++.+  
T Consensus        79 ~~~~~~~~~vidg~~~~~~~~~~l~----~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~--  152 (222)
T 1zak_A           79 QPDAQENGWLLDGYPRSYSQAMALE----TLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIA--  152 (222)
T ss_dssp             SHHHHHTCEEEESCCCSHHHHHHHH----TTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGG--
T ss_pred             hccccCCcEEEECCCCCHHHHHHHH----HcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccc--
Confidence            4221 35799999999987666544    2345689999999999999999999988899999999999999766553  


Q ss_pred             CCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          190 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       190 ~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                        .++..|.++..+.+++|+..|+....++.++|..  .++.||++.+++++++.|.+.|.
T Consensus       153 --~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~  209 (222)
T 1zak_A          153 --SRLTQRFDDTEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLG  209 (222)
T ss_dssp             --GGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHH
T ss_pred             --cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHH
Confidence              4566677777889999999999888888887754  58899999999999999998774

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.96  E-value=7.9e-27  Score=187.27  Aligned_cols=184  Identities=37%  Similarity=0.716  Sum_probs=158.7

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA  108 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~  108 (251)
                      +..++.|+|+     |+|||||||+|+.|+++++++++++|+++++.+..+++.+..+++++..+..+++.....++...
T Consensus        17 ~~~~~~I~l~-----G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~   91 (201)
T 2cdn_A           17 RGSHMRVLLL-----GPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDR   91 (201)
T ss_dssp             CCSCCEEEEE-----CCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             CCCCeEEEEE-----CCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence            4678899999     99999999999999999999999999999998888889999999999999889998888888777


Q ss_pred             HcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529          109 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD  188 (251)
Q Consensus       109 l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~  188 (251)
                      +.......++|+||+|.+..+...+..++...+..|+.+|+|++|++++.+|+..|.                       
T Consensus        92 ~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~-----------------------  148 (201)
T 2cdn_A           92 LNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG-----------------------  148 (201)
T ss_dssp             TTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC-----------------------
T ss_pred             HhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC-----------------------
Confidence            665444568999999999988888877776666778999999999999999999873                       


Q ss_pred             CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                              |++++.+.+++|+..|.....++.++|  ...++.||++.+++++++.|.+.|+
T Consensus       149 --------r~~~~~e~~~~r~~~~~~~~~~~~~~~--~~~~~~Id~~~~~eev~~~I~~~l~  200 (201)
T 2cdn_A          149 --------RADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRALG  200 (201)
T ss_dssp             --------CTTCSHHHHHHHHHHHHHHTTTHHHHT--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred             --------CCCCCHHHHHHHHHHHHHhhHHHHHHh--cCcEEEEeCCCCHHHHHHHHHHHHc
Confidence                    234567789999999988887777777  3468889999999999999999875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.95  E-value=1e-25  Score=178.24  Aligned_cols=183  Identities=37%  Similarity=0.665  Sum_probs=153.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~  110 (251)
                      +++.|+++     |+|||||||+++.|++++|++++++|++++..+..+++.+..+++++..+...++......+...+.
T Consensus         3 ~g~~I~l~-----G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~   77 (186)
T 3cm0_A            3 VGQAVIFL-----GPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA   77 (186)
T ss_dssp             CEEEEEEE-----CCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc
Confidence            56788888     9999999999999999999999999999998888888899999999999988898888887776653


Q ss_pred             CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529          111 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT  190 (251)
Q Consensus       111 ~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~  190 (251)
                      .     ++|+||++....+...+..++...+..|+.+|+|++|++++.+|+..|...                       
T Consensus        78 ~-----~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~-----------------------  129 (186)
T 3cm0_A           78 E-----RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAEL-----------------------  129 (186)
T ss_dssp             S-----EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHH-----------------------
T ss_pred             C-----CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcccc-----------------------
Confidence            2     499999999988877776666555556899999999999999999877310                       


Q ss_pred             CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                          ..|.++..+.+++|+..|.....++.++|...+.++.||++.+++++++.|.+.++
T Consensus       130 ----~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~  185 (186)
T 3cm0_A          130 ----EGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALG  185 (186)
T ss_dssp             ----HTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred             ----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence                01245667889999999988878888888776678899999999999999998874

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.94  E-value=5.9e-25  Score=174.52  Aligned_cols=186  Identities=30%  Similarity=0.460  Sum_probs=155.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~  110 (251)
                      .++.|+|.     |+|||||||+++.|++++|++++++|++++....++++.+..+++++..+...++.....++...+.
T Consensus         5 ~~~~I~l~-----G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~   79 (194)
T 1qf9_A            5 KPNVVFVL-----GGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAID   79 (194)
T ss_dssp             CCEEEEEE-----ESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             cCcEEEEE-----CCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence            45678888     9999999999999999999999999999998887888999999999999988888888888877765


Q ss_pred             CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529          111 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT  190 (251)
Q Consensus       111 ~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~  190 (251)
                      .. ...++|+||+|....+...+...+.. +..++++|+|++|++++.+|+..|...                       
T Consensus        80 ~~-~~~~vi~d~~~~~~~~~~~~~~~~~~-~~~~~~vi~l~~~~e~~~~R~~~R~~~-----------------------  134 (194)
T 1qf9_A           80 AN-QGKNFLVDGFPRNEENNNSWEENMKD-FVDTKFVLFFDCPEEVMTQRLLKRGES-----------------------  134 (194)
T ss_dssp             TS-TTCCEEEETCCCSHHHHHHHHHHHTT-TCEEEEEEEEECCHHHHHHHHHHHHTT-----------------------
T ss_pred             hc-CCCCEEEeCcCCCHHHHHHHHHHHhc-cCCCCEEEEEECCHHHHHHHHHhcccc-----------------------
Confidence            54 45689999999998887776655432 236889999999999999999987410                       


Q ss_pred             CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                          ..|.++..+.+++|+..|.....++.++|...+.++.||++.+++++++.|.+.++
T Consensus       135 ----~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~  190 (194)
T 1qf9_A          135 ----SGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFK  190 (194)
T ss_dssp             ----SCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             ----CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHH
Confidence                01346677899999999998888888888776778899999999999999998874

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.94  E-value=5.8e-25  Score=175.17  Aligned_cols=184  Identities=35%  Similarity=0.587  Sum_probs=152.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~  110 (251)
                      +++.|+|+     |+|||||||+++.|++++|++++++|++++.....+++.+..+++.+..|..++......++...+.
T Consensus         8 ~~~~I~l~-----G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~   82 (196)
T 2c95_A            8 KTNIIFVV-----GGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMV   82 (196)
T ss_dssp             TSCEEEEE-----ECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence            56789999     9999999999999999999999999999999888888999999999988888888887777766554


Q ss_pred             C-CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCC
Q 025529          111 K-PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV  189 (251)
Q Consensus       111 ~-~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~  189 (251)
                      . ...+.++|+||+|....+...+...+    ..++.+|+|++|++++.+|+..|....                     
T Consensus        83 ~~~~~~~~vi~d~~~~~~~~~~~~~~~~----~~~~~vi~l~~~~e~~~~R~~~R~~~~---------------------  137 (196)
T 2c95_A           83 AKVNTSKGFLIDGYPREVQQGEEFERRI----GQPTLLLYVDAGPETMTQRLLKRGETS---------------------  137 (196)
T ss_dssp             HHTTTCSCEEEESCCCSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHHHTSS---------------------
T ss_pred             hccccCCcEEEeCCCCCHHHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHccCCcC---------------------
Confidence            3 22456899999999987776555432    457899999999999999998774110                     


Q ss_pred             CCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          190 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       190 ~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                            .+.++..+.+++|+..|+....++.++|...+.++.||++.+++++++.|.+.|+
T Consensus       138 ------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~  192 (196)
T 2c95_A          138 ------GRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLD  192 (196)
T ss_dssp             ------SCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred             ------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHH
Confidence                  1234567788999999999888888888766678889999999999999998774

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.93  E-value=2.1e-24  Score=171.53  Aligned_cols=187  Identities=27%  Similarity=0.499  Sum_probs=149.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHc-CCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDEAM  109 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l  109 (251)
                      +++.|+|.     |+|||||||+|+.|++++|+++++.|++++....+ .+.++..+++++..|...++.....++...+
T Consensus         2 ~~~~I~l~-----G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~   76 (196)
T 1tev_A            2 KPLVVFVL-----GGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREM   76 (196)
T ss_dssp             -CEEEEEE-----CCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CceEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence            35678888     99999999999999999999999999999887654 5677888888888888888876665554433


Q ss_pred             c----CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCC
Q 025529          110 K----KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG  185 (251)
Q Consensus       110 ~----~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~  185 (251)
                      .    .......+|+||+|.+..+...+...+.. ...++.+|+|++|++++.+|+..|...                  
T Consensus        77 ~~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~~~e~~~~R~~~R~~~------------------  137 (196)
T 1tev_A           77 DQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDG-KADVSFVLFFDCNNEICIERCLERGKS------------------  137 (196)
T ss_dssp             HHHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTT-TCEEEEEEEEECCHHHHHHHHHHHHHT------------------
T ss_pred             HhhhccccCCCeEEEeCCCCCHHHHHHHHHHhcc-cCCCCEEEEEECCHHHHHHHHHccccc------------------
Confidence            2    22234679999999998877766554432 246789999999999999999877410                  


Q ss_pred             CCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          186 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       186 ~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                               ..|++++.+.+++++..|.....++.++|...+.++.||++.+++++++.|.+.|+
T Consensus       138 ---------~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  193 (196)
T 1tev_A          138 ---------SGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD  193 (196)
T ss_dssp             ---------SSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             ---------CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence                     12355667889999999999999999999877788899999999999999998875

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.93  E-value=2e-24  Score=173.39  Aligned_cols=186  Identities=27%  Similarity=0.543  Sum_probs=149.8

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHH-cCCchHHHHHHHHHcCCCcCHHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA-AKTPLGIKAKEAMDKGELVSDDLVVGIIDE  107 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~  107 (251)
                      +.+++.|+|+     |+|||||||+++.|++++|++++++|++++.... .++..+..+++++..|...++.....++..
T Consensus        12 ~~~~~~I~l~-----G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~   86 (203)
T 1ukz_A           12 PDQVSVIFVL-----GGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRN   86 (203)
T ss_dssp             TTTCEEEEEE-----CSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCCCcEEEEE-----CCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHH
Confidence            3456778888     9999999999999999999999999999988754 567788889998888888888777776665


Q ss_pred             HHcCC-CCC-CceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCC
Q 025529          108 AMKKP-SCQ-KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG  185 (251)
Q Consensus       108 ~l~~~-~~~-~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~  185 (251)
                      .+... ..+ .++|+||+|++..+...+...+    ..++.+|+|++|++++.+|+..|...                  
T Consensus        87 ~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~----~~~~~~i~l~~~~e~~~~Rl~~R~~~------------------  144 (203)
T 1ukz_A           87 AISDNVKANKHKFLIDGFPRKMDQAISFERDI----VESKFILFFDCPEDIMLERLLERGKT------------------  144 (203)
T ss_dssp             HHHHHHHTTCCEEEEETCCCSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHHHHH------------------
T ss_pred             HHHhhhccCCCeEEEeCCCCCHHHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHhcccc------------------
Confidence            54321 122 5799999999988777655432    35799999999999999999877310                  


Q ss_pred             CCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          186 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       186 ~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                               ..+.+++.+.+++|+..|.....++.++|...+.++.||++.+++++++.|.+.|+
T Consensus       145 ---------~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~  200 (203)
T 1ukz_A          145 ---------SGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIR  200 (203)
T ss_dssp             ---------HCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             ---------CCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHh
Confidence                     01235567889999999999888998888877788899999999999999998874

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.93  E-value=2.7e-24  Score=171.71  Aligned_cols=184  Identities=29%  Similarity=0.532  Sum_probs=149.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~  110 (251)
                      .++.|+|.     |+|||||||+|+.|++++|+.++++|++++.....+++.+..+++++..|..+++.....++...+.
T Consensus        11 ~~~~I~l~-----G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~   85 (199)
T 2bwj_A           11 KCKIIFII-----GGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMV   85 (199)
T ss_dssp             HSCEEEEE-----ECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHh
Confidence            45678888     9999999999999999999999999999998887788889999999998888888888777766554


Q ss_pred             CC-CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCC
Q 025529          111 KP-SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV  189 (251)
Q Consensus       111 ~~-~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~  189 (251)
                      .. ....++|+||+|....+...|...+    ..|+++|+|++|++++.+|+..|...                      
T Consensus        86 ~~~~~~~~vi~dg~~~~~~~~~~l~~~~----~~~~~~i~l~~~~~~~~~R~~~R~~~----------------------  139 (199)
T 2bwj_A           86 ASLGDTRGFLIDGYPREVKQGEEFGRRI----GDPQLVICMDCSADTMTNRLLQMSRS----------------------  139 (199)
T ss_dssp             HHTTSCSCEEEETCCSSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHTCCC----------------------
T ss_pred             cccccCccEEEeCCCCCHHHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHcCCCC----------------------
Confidence            32 2456899999999988776654321    26789999999999999999987420                      


Q ss_pred             CCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          190 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       190 ~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                           ..+.++..+.+++|+..|+....++.++|...+.++.||++.+++++++.|.+.++
T Consensus       140 -----~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  195 (199)
T 2bwj_A          140 -----SLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAID  195 (199)
T ss_dssp             -----CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHH
T ss_pred             -----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence                 00123356788899988988888888888766677889999999999999988774

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.92  E-value=3.6e-23  Score=171.09  Aligned_cols=208  Identities=38%  Similarity=0.695  Sum_probs=170.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~  110 (251)
                      ++..++|+     |++||||||+++.|++++|+.+++.++++.......+..+..+..++..+...++..+.+.+...+.
T Consensus        26 ~~~~i~l~-----G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~  100 (246)
T 2bbw_A           26 KLLRAVIL-----GPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELE  100 (246)
T ss_dssp             CCCEEEEE-----CCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCcEEEEE-----CCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            56789999     9999999999999999999999999998887666566778888888888888888777777766554


Q ss_pred             CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529          111 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT  190 (251)
Q Consensus       111 ~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~  190 (251)
                      .. ...++++||+|....+...+...     ..++.+|+|++|++++.+|+..|+.+..+|+.+.....+|...-.++.|
T Consensus       101 ~~-~~~~~il~g~~~~~~~~~~l~~~-----~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~  174 (246)
T 2bbw_A          101 NR-RGQHWLLDGFPRTLGQAEALDKI-----CEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVT  174 (246)
T ss_dssp             TC-TTSCEEEESCCCSHHHHHHHHTT-----CCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTT
T ss_pred             hc-CCCeEEEECCCCCHHHHHHHHhh-----cCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCccccccccc
Confidence            43 34578999999887555443321     4578999999999999999998888888887766546677666666667


Q ss_pred             CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                      ++++..+..+..+.+.+++..|.+...++.++|.+.+.++.||++.+ +++++.|.+.|.
T Consensus       175 ~EP~~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~  233 (246)
T 2bbw_A          175 GEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFS  233 (246)
T ss_dssp             CCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHH
T ss_pred             ccccccCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHH
Confidence            77777776778899999999999988899999998888999999988 999999998875

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.80  E-value=1.6e-17  Score=129.13  Aligned_cols=169  Identities=17%  Similarity=0.191  Sum_probs=113.9

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcC----CchHHHHHHHHHc-CCCcCHHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK----TPLGIKAKEAMDK-GELVSDDLVVGIIDE  107 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~----~~~~~~i~~~l~~-~~~~~~~~~~~ll~~  107 (251)
                      |.|++.     |+|||||||+++.| +.+|+++++++++++......    ...+......... +    ...+..++..
T Consensus         2 ~~I~l~-----G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   71 (179)
T 3lw7_A            2 KVILIT-----GMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYG----DGVVARLCVE   71 (179)
T ss_dssp             CEEEEE-----CCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHC----TTHHHHHHHH
T ss_pred             cEEEEE-----CCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCC----HHHHHHHHHH
Confidence            456666     99999999999999 999999999999998876542    2233333333322 2    2334555555


Q ss_pred             HHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCC
Q 025529          108 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVD  187 (251)
Q Consensus       108 ~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~  187 (251)
                      .+.. .....+|+||+ ....+...+...+    ..++.+|+|++|++++.+|+..|...                    
T Consensus        72 ~l~~-~~~~~vi~dg~-~~~~~~~~l~~~~----~~~~~~i~l~~~~~~~~~R~~~R~~~--------------------  125 (179)
T 3lw7_A           72 ELGT-SNHDLVVFDGV-RSLAEVEEFKRLL----GDSVYIVAVHSPPKIRYKRMIERLRS--------------------  125 (179)
T ss_dssp             HHCS-CCCSCEEEECC-CCHHHHHHHHHHH----CSCEEEEEEECCHHHHHHHHHTCC----------------------
T ss_pred             HHHh-cCCCeEEEeCC-CCHHHHHHHHHHh----CCCcEEEEEECCHHHHHHHHHhccCC--------------------
Confidence            5533 34568999998 8888888776654    35679999999999999999988410                    


Q ss_pred             CCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          188 DVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       188 ~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                               ....+.+.+.+|+.....  .+...++... . +.||++.+++++.++|.+.++
T Consensus       126 ---------~~~~~~~~~~~r~~~~~~--~~~~~~~~~a-d-~vId~~~~~~~~~~~i~~~l~  175 (179)
T 3lw7_A          126 ---------DDSKEISELIRRDREELK--LGIGEVIAMA-D-YIITNDSNYEEFKRRCEEVTD  175 (179)
T ss_dssp             -----------CCCHHHHHHHHHHHHH--HTHHHHHHTC-S-EEEECCSCHHHHHHHHHHHHH
T ss_pred             ---------CCcchHHHHHHHHHhhhc--cChHhHHHhC-C-EEEECCCCHHHHHHHHHHHHH
Confidence                     013455677777643221  1122333222 2 457787899999999988774

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.73  E-value=1.9e-16  Score=129.37  Aligned_cols=179  Identities=16%  Similarity=0.174  Sum_probs=114.3

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC--CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII  105 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll  105 (251)
                      .+.+++.|+|+     |+|||||||+++.|++.++  ..++.+.      .+.+++.|..+++++.++....+....-+.
T Consensus        22 ~~~~g~~i~i~-----G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~   90 (229)
T 4eaq_A           22 SNAMSAFITFE-----GPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLF   90 (229)
T ss_dssp             CCCCCEEEEEE-----CCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHH
T ss_pred             ecCCCeEEEEE-----cCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHH
Confidence            35578899999     9999999999999999996  4544432      234577888999988877654443332221


Q ss_pred             -HHHHcCC--------CCCCceEEe----------CCCCCHHHH--HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          106 -DEAMKKP--------SCQKGFILD----------GFPRTEVQA--QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       106 -~~~l~~~--------~~~~~~Iid----------g~~~~~~~~--~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                       ..+....        ..++.+|+|          |+++...+.  ..+..+ ...+..||++|+|++|++++.+|+..|
T Consensus        91 ~a~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~R  169 (229)
T 4eaq_A           91 AASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEF-AINGLYPDLTIYLNVSAEVGRERIIKN  169 (229)
T ss_dssp             HHHHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHH-HhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence             1222111        123467889          887655332  334333 234568999999999999999999987


Q ss_pred             cCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHH
Q 025529          165 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSE  244 (251)
Q Consensus       165 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~  244 (251)
                      ...                           ..+.++....+.+|+..++..+   .+.+  .+.++.||++.++++++++
T Consensus       170 ~~~---------------------------~dr~e~~~~~~~~rv~~~y~~l---~~~~--~~~~~vIDa~~s~eev~~~  217 (229)
T 4eaq_A          170 SRD---------------------------QNRLDQEDLKFHEKVIEGYQEI---IHNE--SQRFKSVNADQPLENVVED  217 (229)
T ss_dssp             --------------------------------CCCHHHHHHHHHHHHHHHHH---TTTC--TTTEEEEETTSCHHHHHHH
T ss_pred             CCC---------------------------ccchhhhhHHHHHHHHHHHHHH---HHhC--CCCEEEEeCCCCHHHHHHH
Confidence            410                           0122333445555554433222   1111  2468999999999999999


Q ss_pred             HHHHhc
Q 025529          245 VQKALS  250 (251)
Q Consensus       245 i~~~l~  250 (251)
                      |.+.|.
T Consensus       218 I~~~l~  223 (229)
T 4eaq_A          218 TYQTII  223 (229)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998774

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.72  E-value=3.6e-16  Score=125.52  Aligned_cols=172  Identities=16%  Similarity=0.206  Sum_probs=105.0

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh--CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHH-HHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID-EAM  109 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~-~~l  109 (251)
                      ..|+|+     |++||||||+++.|++++  |+.++.+..      +.+++.|..+++++.++...+.....-+.. .+.
T Consensus         3 kFI~~E-----G~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~   71 (205)
T 4hlc_A            3 AFITFE-----GPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRR   71 (205)
T ss_dssp             EEEEEE-----CCTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHH
T ss_pred             CEEEEE-----CCCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence            478889     999999999999999998  555554421      346788899999988877766654332221 111


Q ss_pred             c--------CCCCCCceEEeCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025529          110 K--------KPSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS  169 (251)
Q Consensus       110 ~--------~~~~~~~~Iidg~~~~------------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~  169 (251)
                      .        .+..+..+|.|.|..+            ......+.... ..+..||++|||++|++++.+|+..|+... 
T Consensus        72 ~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~-~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~-  149 (205)
T 4hlc_A           72 EHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFA-INGLYPDLTIYLNVSAEVGRERIIKNSRDQ-  149 (205)
T ss_dssp             HHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHH-hcCCCCCEEeeeCCCHHHHHHHHHhcCCcc-
Confidence            1        1112334667865321            22222233222 234689999999999999999998874210 


Q ss_pred             CCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHhccHHHHHHHhh-CCcEEEEcCCCChhHHHHHHHH
Q 025529          170 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQEVTSEVQK  247 (251)
Q Consensus       170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~-~~y~~~~~~~~~~~~~-~~~~~~id~~~~~eev~~~i~~  247 (251)
                                                .|.+.....+.+|+ +.|.       +++.. .+.++.||++.++++|+++|.+
T Consensus       150 --------------------------dr~e~~~~~f~~~v~~~Y~-------~l~~~~~~~~~~IDa~~~~e~V~~~i~~  196 (205)
T 4hlc_A          150 --------------------------NRLDQEDLKFHEKVIEGYQ-------EIIHNESQRFKSVNADQPLENVVEDTYQ  196 (205)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHHH-------HHHHSCCTTEEEEETTSCHHHHHHHHHH
T ss_pred             --------------------------cchhccCHHHHHHHHHHHH-------HHHHhCCCCEEEEECCCCHHHHHHHHHH
Confidence                                      01111122233333 2222       22222 3469999999999999999887


Q ss_pred             Hhc
Q 025529          248 ALS  250 (251)
Q Consensus       248 ~l~  250 (251)
                      .|.
T Consensus       197 ~i~  199 (205)
T 4hlc_A          197 TII  199 (205)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=1.9e-16  Score=126.50  Aligned_cols=166  Identities=14%  Similarity=0.173  Sum_probs=100.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCC-CcCHHHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-LVSDDLVVGIIDEA  108 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~ll~~~  108 (251)
                      .+++.|+|+     |+|||||||+++.|++.+|+++++.|+++....  +..    +.+++.... .........++...
T Consensus        23 ~~~~~i~l~-----G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g~~----i~~~~~~~~~~~~~~~e~~~l~~l   91 (199)
T 3vaa_A           23 NAMVRIFLT-----GYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--HKT----VGELFTERGEAGFRELERNMLHEV   91 (199)
T ss_dssp             -CCCEEEEE-----CCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSC----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEE-----cCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--CCc----HHHHHHhcChHHHHHHHHHHHHHH
Confidence            456689999     999999999999999999999999999876532  122    222222110 00011112222222


Q ss_pred             HcCCCCCCceEEe---CCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh-cCcCCCCCCceecccCCCCCCC
Q 025529          109 MKKPSCQKGFILD---GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT-GRWIHPSSGRTYHTKFAPPKVP  184 (251)
Q Consensus       109 l~~~~~~~~~Iid---g~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~-~r~~~~~~~~~~~~~~~~p~~~  184 (251)
                      .    ....+|++   |.+........+..        ++.+|||++|.+++.+|+. .++..+                
T Consensus        92 ~----~~~~~vi~~ggg~~~~~~~~~~l~~--------~~~vi~L~~~~e~l~~Rl~~~~~~Rp----------------  143 (199)
T 3vaa_A           92 A----EFENVVISTGGGAPCFYDNMEFMNR--------TGKTVFLNVHPDVLFRRLRIAKQQRP----------------  143 (199)
T ss_dssp             T----TCSSEEEECCTTGGGSTTHHHHHHH--------HSEEEEEECCHHHHHHHHHHTGGGCG----------------
T ss_pred             h----hcCCcEEECCCcEEccHHHHHHHHc--------CCEEEEEECCHHHHHHHHhcCCCCCC----------------
Confidence            2    33567776   33333333333222        5789999999999999998 443110                


Q ss_pred             CCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCC-ChhHHHHHHHHHhc
Q 025529          185 GVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK-PPQEVTSEVQKALS  250 (251)
Q Consensus       185 ~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~-~~eev~~~i~~~l~  250 (251)
                                . ..+.+.+.+..++..+.....+   +|..  .-+.||++. ++++++++|.+.|.
T Consensus       144 ----------~-~~~~~~~~~~~~i~~~~~~r~~---~y~~--ad~~Idt~~~s~ee~~~~I~~~l~  194 (199)
T 3vaa_A          144 ----------I-LQGKEDDELMDFIIQALEKRAP---FYTQ--AQYIFNADELEDRWQIESSVQRLQ  194 (199)
T ss_dssp             ----------G-GTTCCHHHHHHHHHHHHHHHHH---HHTT--SSEEEECCCCSSHHHHHHHHHHHH
T ss_pred             ----------C-cCCCChhhHHHHHHHHHHHHHH---HHhh--CCEEEECCCCCHHHHHHHHHHHHH
Confidence                      0 0133455666666655544443   4443  235677765 99999999988774

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.70  E-value=1.8e-15  Score=119.62  Aligned_cols=162  Identities=23%  Similarity=0.230  Sum_probs=102.0

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHH--------
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV--------  102 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~--------  102 (251)
                      .|+++     |+|||||||+++.|++++   |+++++++.      ...+..+..+++++..|...+.....        
T Consensus         2 ~I~l~-----G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~   70 (195)
T 2pbr_A            2 LIAFE-----GIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSK   70 (195)
T ss_dssp             EEEEE-----CSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             EEEEE-----CCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            45556     999999999999999998   999998863      23345666777777766444332211        


Q ss_pred             ---HHHHHHHcCCCCCCceEEe----------CCCCCH--HHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCC
Q 025529          103 ---GIIDEAMKKPSCQKGFILD----------GFPRTE--VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH  167 (251)
Q Consensus       103 ---~ll~~~l~~~~~~~~~Iid----------g~~~~~--~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~  167 (251)
                         .++...+.   ....+|+|          |++...  .....+..++ ..+..|+.+|+|++|++++.+|+..|.  
T Consensus        71 ~l~~~i~~~l~---~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~d~vi~l~~~~e~~~~Rl~~r~--  144 (195)
T 2pbr_A           71 LIEEKIIPDLK---RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFA-TRGVKPDITLLLDIPVDIALRRLKEKN--  144 (195)
T ss_dssp             HHHHTHHHHHH---TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHHTTT--
T ss_pred             HHHHHHHHHHh---CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHh-hcCCCCCEEEEEeCCHHHHHHHhhccC--
Confidence               11122221   22346677          555432  2333333222 223478999999999999999998542  


Q ss_pred             CCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHH
Q 025529          168 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQ  246 (251)
Q Consensus       168 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~-~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~  246 (251)
                                                   +.+ . ..+.+|+ ..|...    ...+   +.++.||++.+++++++.|.
T Consensus       145 -----------------------------~~~-~-~~~~~~~~~~~~~~----~~~~---~~~~~Id~~~~~~~~~~~i~  186 (195)
T 2pbr_A          145 -----------------------------RFE-N-KEFLEKVRKGFLEL----AKEE---ENVVVIDASGEEEEVFKEIL  186 (195)
T ss_dssp             -----------------------------CCC-C-HHHHHHHHHHHHHH----HHHS---TTEEEEETTSCHHHHHHHHH
T ss_pred             -----------------------------ccc-h-HHHHHHHHHHHHHH----HhhC---CCEEEEECCCCHHHHHHHHH
Confidence                                         111 2 2344444 333322    1222   36788999999999999999


Q ss_pred             HHhc
Q 025529          247 KALS  250 (251)
Q Consensus       247 ~~l~  250 (251)
                      +.++
T Consensus       187 ~~l~  190 (195)
T 2pbr_A          187 RALS  190 (195)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.68  E-value=2.6e-15  Score=121.22  Aligned_cols=174  Identities=17%  Similarity=0.183  Sum_probs=108.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcCC--CcCHHHHHH-H
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE--LVSDDLVVG-I  104 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~-l  104 (251)
                      +++.|+|+     |++||||||+++.|++++   |+.++.+..      +.++++|..+++++.++.  .+......- .
T Consensus         5 ~g~~i~~e-----G~~gsGKsT~~~~l~~~l~~~~~~v~~~~~------p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf   73 (213)
T 4edh_A            5 TGLFVTLE-----GPEGAGKSTNRDYLAERLRERGIEVQLTRE------PGGTPLAERIRELLLAPSDEPMAADTELLLM   73 (213)
T ss_dssp             CCEEEEEE-----CSTTSSHHHHHHHHHHHHHTTTCCEEEEES------SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHH
T ss_pred             CceEEEEE-----cCCCCCHHHHHHHHHHHHHHcCCCcccccC------CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence            57889999     999999999999999998   455554421      346788999999988764  233322211 1


Q ss_pred             HHHHHcC--------CCCCCceEEeCCCC------------CHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          105 IDEAMKK--------PSCQKGFILDGFPR------------TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       105 l~~~l~~--------~~~~~~~Iidg~~~------------~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                      ...+..+        +..+..+|.|.|..            .......+..+ ...+..||++|+|++|++++.+|+..|
T Consensus        74 ~a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~-~~~~~~PDlvi~Ld~~~e~~~~Ri~~R  152 (213)
T 4edh_A           74 FAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESF-VQGDLRPDLTLVFDLPVEIGLARAAAR  152 (213)
T ss_dssp             HHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHH-HhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence            1111111        11234567787532            12233333322 234578999999999999999999987


Q ss_pred             cCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHH
Q 025529          165 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTS  243 (251)
Q Consensus       165 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~-~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~  243 (251)
                      ..    ..                        +.+.....+.+++ +.|...    .+.+  .+.++.||++.++++|++
T Consensus       153 ~~----~d------------------------r~E~~~~~~~~rv~~~y~~l----~~~~--~~~~~vIDa~~s~eeV~~  198 (213)
T 4edh_A          153 GR----LD------------------------RFEQEDRRFFEAVRQTYLQR----AAQA--PERYQVLDAGLPLAEVQA  198 (213)
T ss_dssp             SS----CC------------------------TTTTSCHHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHH
T ss_pred             CC----cC------------------------cccccHHHHHHHHHHHHHHH----HHHC--CCcEEEEeCCCCHHHHHH
Confidence            41    00                        1121112333333 344322    2222  246999999999999999


Q ss_pred             HHHHHhc
Q 025529          244 EVQKALS  250 (251)
Q Consensus       244 ~i~~~l~  250 (251)
                      .|.+.|.
T Consensus       199 ~I~~~l~  205 (213)
T 4edh_A          199 GLDRLLP  205 (213)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988774

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.67  E-value=2.8e-17  Score=132.14  Aligned_cols=175  Identities=14%  Similarity=0.120  Sum_probs=108.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHH--
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDE--  107 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~--  107 (251)
                      .+++.|+|+     |+|||||||+++.|+++++..+++++ +++. ...+++.+..+++++..+..++......+...  
T Consensus         8 ~~~~~I~l~-----G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~   80 (212)
T 2wwf_A            8 KKGKFIVFE-----GLDRSGKSTQSKLLVEYLKNNNVEVK-HLYF-PNRETGIGQIISKYLKMENSMSNETIHLLFSANR   80 (212)
T ss_dssp             BCSCEEEEE-----ESTTSSHHHHHHHHHHHHHHTTCCEE-EEES-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred             hcCCEEEEE-----cCCCCCHHHHHHHHHHHHHHcCCcEE-EEec-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            467889999     99999999999999999987777663 2221 11235667777777776666665443332221  


Q ss_pred             -----HHcC-CCCCCceEEeCCCCCHH--HHHH--H-HHHH---HhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCce
Q 025529          108 -----AMKK-PSCQKGFILDGFPRTEV--QAQK--L-DEML---EKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRT  173 (251)
Q Consensus       108 -----~l~~-~~~~~~~Iidg~~~~~~--~~~~--l-~~~~---~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~  173 (251)
                           .+.. ......+|+|+++.+-.  +...  + ..++   ......|+.+|+|++|++++.+|+..|..       
T Consensus        81 ~~~~~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~-------  153 (212)
T 2wwf_A           81 WEHMNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEE-------  153 (212)
T ss_dssp             HTTHHHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSS-------
T ss_pred             HHHHHHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcc-------
Confidence                 0111 11234688999875311  1110  0 0111   11124689999999999999999865420       


Q ss_pred             ecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          174 YHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       174 ~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                             |.+ . +.+.+|+...+.....       ...++.||++.+++++++.|.+.++
T Consensus       154 -----------------------r~~-~-~~~~~~~~~~~~~~~~-------~~~~~~Id~~~~~~~~~~~i~~~l~  198 (212)
T 2wwf_A          154 -----------------------IYE-K-VETQKKIYETYKHFAH-------EDYWINIDATRKIEDIHNDIVKEVT  198 (212)
T ss_dssp             -----------------------TTC-S-HHHHHHHHHHGGGGTT-------CTTEEEEECSSCHHHHHHHHHHHHT
T ss_pred             -----------------------ccc-H-HHHHHHHHHHHHHHhc-------cCCEEEEECCCCHHHHHHHHHHHHH
Confidence                                   111 1 3555666443332221       2357889999999999999998875

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.67  E-value=2.5e-15  Score=119.96  Aligned_cols=168  Identities=15%  Similarity=0.186  Sum_probs=100.8

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHH---
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID---  106 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~---  106 (251)
                      |.|+|+     |+.||||||+++.|++++   |..++.+..      +.+++.+..+++++..+...+.....-...   
T Consensus         1 mfI~~E-----G~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~   69 (197)
T 3hjn_A            1 MFITFE-----GIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRN   69 (197)
T ss_dssp             CEEEEE-----CSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHH
Confidence            578888     999999999999999988   666655431      345677777877776655443322211111   


Q ss_pred             ---HHH-cCCCCCCceEEeCCCCCH------------HHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025529          107 ---EAM-KKPSCQKGFILDGFPRTE------------VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS  170 (251)
Q Consensus       107 ---~~l-~~~~~~~~~Iidg~~~~~------------~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~  170 (251)
                         ..+ ..+..+..+|.|.|..+.            .....+.. +...+..||++|+|++|+++..+|...+.     
T Consensus        70 ~~~~~I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~-~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d-----  143 (197)
T 3hjn_A           70 LLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELND-FATDGLIPDLTFYIDVDVETALKRKGELN-----  143 (197)
T ss_dssp             HHHHHHHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHH-HHHTTCCCSEEEEEECCHHHHHHHC---C-----
T ss_pred             HHHHHHHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHh-hhhcCCCCCceeecCcChHHHHHhCcCcC-----
Confidence               111 111233456778764221            11122222 22345789999999999999999954431     


Q ss_pred             CceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          171 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       171 ~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~-~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                                                |.+ .. .+.+|+ +.|.+    +.+.  ....++.|||+.++++|.++|.+.|
T Consensus       144 --------------------------r~e-~~-ef~~rv~~~y~~----la~~--~~~~~~~IDa~~~~eeV~~~I~~~i  189 (197)
T 3hjn_A          144 --------------------------RFE-KR-EFLERVREGYLV----LARE--HPERIVVLDGKRSIEEIHRDVVREV  189 (197)
T ss_dssp             --------------------------TTC-CH-HHHHHHHHHHHH----HHHH--CTTTEEEEETTSCHHHHHHHHHHHH
T ss_pred             --------------------------ccc-cH-HHHHHHHHHHHH----HHHh--CCCCEEEEcCCCCHHHHHHHHHHHH
Confidence                                      111 11 333333 33322    1111  1346899999999999999999988


Q ss_pred             cC
Q 025529          250 SA  251 (251)
Q Consensus       250 ~~  251 (251)
                      ++
T Consensus       190 ~~  191 (197)
T 3hjn_A          190 KR  191 (197)
T ss_dssp             SC
T ss_pred             HH
Confidence            63

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.67  E-value=4.2e-15  Score=116.12  Aligned_cols=162  Identities=18%  Similarity=0.185  Sum_probs=92.4

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH-HhCCceechhHHHHHHHHcCCc-----hHHHHHHHHHcCCCcCHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD-EYCLCHLATGDMLRAAVAAKTP-----LGIKAKEAMDKGELVSDDLVVGIID  106 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~-~~~~~~i~~~~li~~~~~~~~~-----~~~~i~~~l~~~~~~~~~~~~~ll~  106 (251)
                      +.|++.     |+|||||||+++.|++ .+++.+++.|.+ +......+.     +......       .....+...+.
T Consensus         3 ~~I~i~-----G~~GsGKST~a~~L~~~~~~~~~i~~d~~-r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~   69 (181)
T 1ly1_A            3 KIILTI-----GCPGSGKSTWAREFIAKNPGFYNINRDDY-RQSIMAHEERDEYKYTKKKEG-------IVTGMQFDTAK   69 (181)
T ss_dssp             EEEEEE-----CCTTSSHHHHHHHHHHHSTTEEEECHHHH-HHHHTTSCCGGGCCCCHHHHH-------HHHHHHHHHHH
T ss_pred             eEEEEe-----cCCCCCHHHHHHHHHhhcCCcEEecHHHH-HHHhhCCCccchhhhchhhhh-------HHHHHHHHHHH
Confidence            456777     9999999999999999 689999998654 443332211     1111111       01223344455


Q ss_pred             HHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCC
Q 025529          107 EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGV  186 (251)
Q Consensus       107 ~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~  186 (251)
                      ..+.....+.++|+|+++....+...+...+...+. +..+|+|++|.+++.+|+..|..+                   
T Consensus        70 ~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~-~~~~i~l~~~~~~~~~R~~~R~~~-------------------  129 (181)
T 1ly1_A           70 SILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGW-KVEHKVFDVPWTELVKRNSKRGTK-------------------  129 (181)
T ss_dssp             HHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTC-EEEEEECCCCHHHHHHHHTTCGGG-------------------
T ss_pred             HHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCC-CEEEEEEeCCHHHHHHHHhccccC-------------------
Confidence            555332345689999999888777777665544443 347899999999999999987421                   


Q ss_pred             CCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          187 DDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       187 ~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                                  ....+.+++++..|....        ....+ .+|++.+ +++...|...|
T Consensus       130 ------------~~~~~~i~~~~~~~~~~~--------~~~~~-~id~~~~-~~v~~~i~~~l  170 (181)
T 1ly1_A          130 ------------AVPIDVLRSMYKSMREYL--------GLPVY-NGTPGKP-KAVIFDVDGTL  170 (181)
T ss_dssp             ------------CCCHHHHHHHHHHHHHHH--------TCCCC--------------------
T ss_pred             ------------CCCHHHHHHHHHHhhccC--------CCCcc-ccCCCCC-ceeeehhhhhh
Confidence                        234567777777775541        11123 3787764 77877776655

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.67  E-value=7.6e-16  Score=125.31  Aligned_cols=175  Identities=13%  Similarity=0.150  Sum_probs=106.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-------CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-------LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV  102 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-------~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~  102 (251)
                      .+++.|+|+     |++||||||+++.|+++++       +.++.+    ++  +.+++.|..+++++.++...+.....
T Consensus        23 ~~g~~I~~e-----G~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~l   91 (227)
T 3v9p_A           23 ARGKFITFE-----GIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEAL   91 (227)
T ss_dssp             CCCCEEEEE-----CCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             cCCeEEEEE-----CCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHH
Confidence            368899999     9999999999999999984       333322    11  34678899999998887544333222


Q ss_pred             HHHHHHHcC--------CCCCCceEEeCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529          103 GIIDEAMKK--------PSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT  162 (251)
Q Consensus       103 ~ll~~~l~~--------~~~~~~~Iidg~~~~------------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~  162 (251)
                      -....+...        +..++.+|.|.|..+            ......+..+ ...+..||++|||++|++++.+|+.
T Consensus        92 lf~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~-~~~~~~PDl~I~Ldv~~e~~~~Ri~  170 (227)
T 3v9p_A           92 LMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERW-VQGGFQPDLTVLFDVPPQIASARRG  170 (227)
T ss_dssp             HHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHH-HHTTCCCSEEEEEECCSSCGGGTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHH-HhcCCCCCEEEEEeCCHHHHHHHHH
Confidence            121122111        112345778876432            2222222222 2235789999999999999999998


Q ss_pred             cCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHhccHHHHHHHhhCCcEEEEcCCCChhHH
Q 025529          163 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEV  241 (251)
Q Consensus       163 ~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~-~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev  241 (251)
                      .|..    ..                        +.+.....+.+|+ +.|..    +.+.+  .+.++.||++.++++|
T Consensus       171 ~R~~----~d------------------------r~E~~~~ef~~rv~~~Y~~----la~~~--~~~~~vIDa~~s~eeV  216 (227)
T 3v9p_A          171 AVRM----PD------------------------KFESESDAFFARTRAEYLR----RAQEA--PHRFVIVDSSEPIAQI  216 (227)
T ss_dssp             CCCC----C---------------------------CCHHHHHHHHHHHHHHH----HHHHC--TTTEEEEETTSCHHHH
T ss_pred             hccC----cc------------------------chhhhhHHHHHHHHHHHHH----HHHHh--cCCEEEEeCCCCHHHH
Confidence            8731    00                        1122123344443 33322    22222  3469999999999999


Q ss_pred             HHHHHHHhc
Q 025529          242 TSEVQKALS  250 (251)
Q Consensus       242 ~~~i~~~l~  250 (251)
                      .++|.+.|+
T Consensus       217 ~~~I~~~l~  225 (227)
T 3v9p_A          217 RKQLEGVLA  225 (227)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998875

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.66  E-value=2.2e-15  Score=120.36  Aligned_cols=158  Identities=18%  Similarity=0.217  Sum_probs=100.7

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHH---HHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV---VGIIDEA  108 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~ll~~~  108 (251)
                      ++.|+|.     |++||||||+++.|++.+|+.+++.|++.....          ......+....+...   ...+...
T Consensus        18 ~~~I~l~-----G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~   82 (202)
T 3t61_A           18 PGSIVVM-----GVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGER   82 (202)
T ss_dssp             SSCEEEE-----CSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred             CeEEEEE-----CCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHH
Confidence            5678888     999999999999999999999999987642210          111112222222211   1222222


Q ss_pred             HcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529          109 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD  188 (251)
Q Consensus       109 l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~  188 (251)
                      +   .....+|+|+..........+...    ...++.+|+|++|.+++.+|+..|..+                     
T Consensus        83 ~---~~~~~vivd~~~~~~~~~~~l~~~----~~~~~~vi~l~~~~e~~~~Rl~~R~~~---------------------  134 (202)
T 3t61_A           83 L---ASREPVVVSCSALKRSYRDKLRES----APGGLAFVFLHGSESVLAERMHHRTGH---------------------  134 (202)
T ss_dssp             H---TSSSCCEEECCCCSHHHHHHHHHT----STTCCEEEEEECCHHHHHHHHHHHHSS---------------------
T ss_pred             H---hcCCCEEEECCCCCHHHHHHHHHh----cCCCeEEEEEeCCHHHHHHHHHHhhcc---------------------
Confidence            2   334578999877666655554432    234568999999999999999988521                     


Q ss_pred             CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                ....+.++..+..+.    +.   + .....+.||++.++++++++|.+.|.
T Consensus       135 ----------~~~~~~~~~~~~~~~----~~---~-~~~~~~~Id~~~~~~e~~~~I~~~l~  178 (202)
T 3t61_A          135 ----------FMPSSLLQTQLETLE----DP---R-GEVRTVAVDVAQPLAEIVREALAGLA  178 (202)
T ss_dssp             ----------CCCHHHHHHHHHHCC----CC---T-TSTTEEEEESSSCHHHHHHHHHHHHH
T ss_pred             ----------CCCHHHHHHHHHhcC----CC---C-CCCCeEEEeCCCCHHHHHHHHHHHHH
Confidence                      112333333333321    11   1 12246789999999999999998874

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.66  E-value=2.5e-15  Score=118.21  Aligned_cols=163  Identities=14%  Similarity=0.142  Sum_probs=91.2

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHc
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~ll~~~l~  110 (251)
                      ++.|+++     |+|||||||+++.|++++|+++++.|+++.....  .+.    .+.+.. |..........++.....
T Consensus         5 ~~~i~l~-----G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g--~~~----~~~~~~~g~~~~~~~~~~~~~~~~~   73 (185)
T 3trf_A            5 LTNIYLI-----GLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG--ADI----AWIFEMEGEAGFRRREREMIEALCK   73 (185)
T ss_dssp             CCEEEEE-----CSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT--SCH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CCh----hhHHHHhCHHHHHHHHHHHHHHHHh
Confidence            4578888     9999999999999999999999999998766322  111    122111 110111222233332222


Q ss_pred             CCCCCCceEEeCC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH--hcCcCCCCCCceecccCCCCCCCCC
Q 025529          111 KPSCQKGFILDGF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI--TGRWIHPSSGRTYHTKFAPPKVPGV  186 (251)
Q Consensus       111 ~~~~~~~~Iidg~--~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl--~~r~~~~~~~~~~~~~~~~p~~~~~  186 (251)
                      .   ...+|..|.  +........+..        ...+|||++|.+++.+|+  ..+..                    
T Consensus        74 ~---~~~vi~~gg~~~~~~~~~~~l~~--------~~~vi~L~~~~e~l~~Rl~~~~~~~--------------------  122 (185)
T 3trf_A           74 L---DNIILATGGGVVLDEKNRQQISE--------TGVVIYLTASIDTQLKRIGQKGEMR--------------------  122 (185)
T ss_dssp             S---SSCEEECCTTGGGSHHHHHHHHH--------HEEEEEEECCHHHHHHHHHCCTTCS--------------------
T ss_pred             c---CCcEEecCCceecCHHHHHHHHh--------CCcEEEEECCHHHHHHHHhhcCCCC--------------------
Confidence            1   123443432  223333332222        247999999999999999  43321                    


Q ss_pred             CCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCC-ChhHHHHHHHHHhc
Q 025529          187 DDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK-PPQEVTSEVQKALS  250 (251)
Q Consensus       187 ~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~-~~eev~~~i~~~l~  250 (251)
                                |+.........++........+....+.   . +.||++. +++++++.|.+.|.
T Consensus       123 ----------rp~~~~~~~~~~l~~~~~~r~~~y~~~a---d-~~Idt~~~~~~e~~~~I~~~l~  173 (185)
T 3trf_A          123 ----------RPLFIKNNSKEKLQQLNEIRKPLYQAMA---D-LVYPTDDLNPRQLATQILVDIK  173 (185)
T ss_dssp             ----------SCCCCCHHHHHHHHHHHHHHHHHHHHHC---S-EEEECTTCCHHHHHHHHHHHSC
T ss_pred             ----------CCCCCCCCHHHHHHHHHHHHHHHHhhcC---C-EEEECCCCCHHHHHHHHHHHHH
Confidence                      1222222223333333333333332222   2 4677765 89999999998875

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.65  E-value=1.9e-15  Score=119.29  Aligned_cols=175  Identities=13%  Similarity=0.159  Sum_probs=95.1

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcC--HHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS--DDLVVGI  104 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~l  104 (251)
                      ++.|+|.     |+|||||||+++.|+++++     +++++++++++......... ....+.   ....+  ...+...
T Consensus         3 ~~~I~i~-----G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~   73 (192)
T 1kht_A            3 NKVVVVT-----GVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLV-SDRDQM---RKMDPETQKRIQKM   73 (192)
T ss_dssp             CCEEEEE-----CCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSC-SSGGGG---SSCCHHHHHHHHHH
T ss_pred             CeEEEEE-----CCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCC-CCHHHH---hcCCHHHHHHHHHH
Confidence            4678888     9999999999999999998     99999999888754321100 000000   00000  1112222


Q ss_pred             HHHHHcCCCCCCceEEeCCCCCHHHHHH---H-HHHHHhcCCCcCEEEEEecCHHHHHH-HHhc--CcCCCCCCceeccc
Q 025529          105 IDEAMKKPSCQKGFILDGFPRTEVQAQK---L-DEMLEKQGKKVDKVLNFAIDDAVLEE-RITG--RWIHPSSGRTYHTK  177 (251)
Q Consensus       105 l~~~l~~~~~~~~~Iidg~~~~~~~~~~---l-~~~~~~~~~~~~~vI~L~~~~e~~~~-Rl~~--r~~~~~~~~~~~~~  177 (251)
                      +...+........+|+||++........   + .+++..  ..++++|||++|++++.+ |+..  |.            
T Consensus        74 ~~~~i~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~~~~~~~~rRl~~~~R~------------  139 (192)
T 1kht_A           74 AGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNE--LNPDLIIVVETTGDEILMRRMSDETRV------------  139 (192)
T ss_dssp             HHHHHHHHHTTSCEEEECCSEEEETTEEEESSCHHHHHH--HCCSEEEEEECCHHHHHHHHHTSSSCS------------
T ss_pred             HHHHHHhhccCCeEEEccceeccccccccccCcHHHHhc--cCCCEEEEEeCCHHHHHHHHhhhcccC------------
Confidence            2222221112347899987542111000   0 011111  136889999999999996 8987  42            


Q ss_pred             CCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEE-cCCCChhHHHHHHHHHhc
Q 025529          178 FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQL-HAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       178 ~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~i-d~~~~~eev~~~i~~~l~  250 (251)
                                         ++....+.+..+...+ .........|.. ..++.| +++.+++++++.|.+.|.
T Consensus       140 -------------------r~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i~  192 (192)
T 1kht_A          140 -------------------RDLDTASTIEQHQFMN-RCAAMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVLR  192 (192)
T ss_dssp             -------------------SSCCCHHHHHHHHHHH-HHHHHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred             -------------------CCcCCHHHHHHHHHHH-HHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHhC
Confidence                               1223333333332222 222222333322 234455 555669999999998764

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.64  E-value=5.2e-15  Score=116.79  Aligned_cols=167  Identities=14%  Similarity=0.158  Sum_probs=94.6

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHHHHc-CCchHHHHHHHHHcCCCcCH--HHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAA-KTPLGIKAKEAMDKGELVSD--DLVVGII  105 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~--~~~~~ll  105 (251)
                      .|+|+     |+|||||||+++.|+++++     +.+++.++++.+.+.. ....+.   ..+  +...+.  ..+...+
T Consensus         3 ~I~i~-----G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~   72 (194)
T 1nks_A            3 IGIVT-----GIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---DEM--RKLSVEKQKKLQIDA   72 (194)
T ss_dssp             EEEEE-----ECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---HHH--TTSCHHHHHHHHHHH
T ss_pred             EEEEE-----CCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---hhh--hcCCHHHHHHHHHHH
Confidence            46666     9999999999999999997     8889888888765521 111110   000  111112  1112111


Q ss_pred             HHHHcCC---CCCCceEEeCCCCCHHH--------HHHHHHHHHhcCCCcCEEEEEecCHHHHHHH-Hhc--CcCCCCCC
Q 025529          106 DEAMKKP---SCQKGFILDGFPRTEVQ--------AQKLDEMLEKQGKKVDKVLNFAIDDAVLEER-ITG--RWIHPSSG  171 (251)
Q Consensus       106 ~~~l~~~---~~~~~~Iidg~~~~~~~--------~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~R-l~~--r~~~~~~~  171 (251)
                      ...+...   .....+|+|+++....+        ...+..      ..|+.+|+|++|++++.+| +..  |..     
T Consensus        73 ~~~i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~vi~l~~~~~~~~~rr~~~~~R~~-----  141 (194)
T 1nks_A           73 AKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE------INPSVIFLLEADPKIILSRQKRDTTRNR-----  141 (194)
T ss_dssp             HHHHHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH------HCCSEEEEEECCHHHHHHHHHHCTTTCC-----
T ss_pred             HHHHHHHhhccCCCEEEECCchhhccccccccCCCHHHHHh------cCCCEEEEEeCCHHHHHHHHHhhcccCC-----
Confidence            1111111   23457899987432222        122222      2378999999999998866 766  520     


Q ss_pred             ceecccCCCCCCCCCCCCCCCCcccCCCCcHHHH--HHHHHHHHhccHHHHHHHhhCCcEEEE-cCCCChhHHHHHHHHH
Q 025529          172 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVL--KSRLEAFHKQTEPVIDYYSKKGIVAQL-HAEKPPQEVTSEVQKA  248 (251)
Q Consensus       172 ~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~--~~r~~~y~~~~~~~~~~~~~~~~~~~i-d~~~~~eev~~~i~~~  248 (251)
                                               .+....+.+  .+++...+   ......+. ...++.| |++.++++++++|.+.
T Consensus       142 -------------------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~  192 (194)
T 1nks_A          142 -------------------------NDYSDESVILETINFARYA---ATASAVLA-GSTVKVIVNVEGDPSIAANEIIRS  192 (194)
T ss_dssp             -------------------------CCCCSHHHHHHHHHHHHHH---HHHHHHHH-TCEEEEEECCSSCHHHHHHHHHHH
T ss_pred             -------------------------CCccCHHHHHHHHHHHHHH---HHHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHH
Confidence                                     011122222  22332222   22233332 2357888 9999999999999987


Q ss_pred             hc
Q 025529          249 LS  250 (251)
Q Consensus       249 l~  250 (251)
                      |.
T Consensus       193 l~  194 (194)
T 1nks_A          193 MK  194 (194)
T ss_dssp             HC
T ss_pred             hC
Confidence            63

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.64  E-value=1.8e-14  Score=116.16  Aligned_cols=173  Identities=16%  Similarity=0.189  Sum_probs=104.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh---CC-ceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CL-CHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV  101 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~-~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~  101 (251)
                      +++.|+|+     |++||||||+++.|++++   |+ .++.+    ++  +.++++|..+++++...     ..+.+...
T Consensus         2 ~g~~i~~e-----G~~gsGKsT~~~~l~~~l~~~~~~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e   70 (213)
T 4tmk_A            2 RSKYIVIE-----GLEGAGKTTARNVVVETLEQLGIRDMVFT----RE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAE   70 (213)
T ss_dssp             CCCEEEEE-----ECTTSCHHHHHHHHHHHHHHTTCCCEEEE----ES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHH
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCCcceee----eC--CCCCHHHHHHHHHHhcccccccccCChHHH
Confidence            36789999     999999999999999988   43 22222    11  35688999999998732     23433321


Q ss_pred             HH--------HHHHHHcC-CCCCCceEEeCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025529          102 VG--------IIDEAMKK-PSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER  160 (251)
Q Consensus       102 ~~--------ll~~~l~~-~~~~~~~Iidg~~~~------------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~R  160 (251)
                      .-        .+...+.. +..+..+|.|.|..+            ......+... ...+..||++|||++|++++.+|
T Consensus        71 ~lL~~A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~-~~~~~~PDl~i~Ldv~~e~~~~R  149 (213)
T 4tmk_A           71 VLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDA-VLGDFRPDLTLYLDVTPEVGLKR  149 (213)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHH-hccCCCCCEEEEEeCCHHHHHHH
Confidence            11        11111110 122345677875322            2222223322 23457899999999999999999


Q ss_pred             HhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCC-cHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChh
Q 025529          161 ITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDD-TAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQ  239 (251)
Q Consensus       161 l~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~-~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~e  239 (251)
                      +..|...                            .+.+. ..+.+++-.+.|...       ....+.++.||++.+++
T Consensus       150 i~~R~~~----------------------------dr~E~~~~~f~~rv~~~y~~l-------a~~~~~~~vIDa~~s~e  194 (213)
T 4tmk_A          150 ARARGEL----------------------------DRIEQESFDFFNRTRARYLEL-------AAQDKSIHTIDATQPLE  194 (213)
T ss_dssp             HHHHSSC----------------------------CTTTTSCHHHHHHHHHHHHHH-------HHTCTTEEEEETTSCHH
T ss_pred             HHhcCCc----------------------------cchhhhHHHHHHHHHHHHHHH-------HHHCCcEEEECCCCCHH
Confidence            9987410                            01111 222333222333322       12225799999999999


Q ss_pred             HHHHHHHHHhc
Q 025529          240 EVTSEVQKALS  250 (251)
Q Consensus       240 ev~~~i~~~l~  250 (251)
                      +|++.|.+.|+
T Consensus       195 eV~~~I~~~l~  205 (213)
T 4tmk_A          195 AVMDAIRTTVT  205 (213)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988774

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.64  E-value=4.6e-15  Score=114.85  Aligned_cols=158  Identities=20%  Similarity=0.271  Sum_probs=91.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKK  111 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~ll~~~l~~  111 (251)
                      |+|+|.     |+|||||||+++.|++++|++++++|++.+...      |..+++++.. +..........++ ..+. 
T Consensus         1 m~I~l~-----G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~l-~~l~-   67 (168)
T 2pt5_A            1 MRIYLI-----GFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE------GLSIPQIFEKKGEAYFRKLEFEVL-KDLS-   67 (168)
T ss_dssp             CEEEEE-----SCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHSCHHHHHHHHHHHH-HHHT-
T ss_pred             CeEEEE-----CCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc------CCCHHHHHHHhChHHHHHHHHHHH-HHHh-
Confidence            456666     999999999999999999999999999876643      2223333322 2111111112222 2222 


Q ss_pred             CCCCCceEEe-CC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529          112 PSCQKGFILD-GF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD  188 (251)
Q Consensus       112 ~~~~~~~Iid-g~--~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~  188 (251)
                        ....+|++ |.  +........    +.    .++.+|+|++|++++.+|+..|...     . .             
T Consensus        68 --~~~~~Vi~~g~~~~~~~~~~~~----l~----~~~~~i~l~~~~e~~~~R~~~r~~r-----~-~-------------  118 (168)
T 2pt5_A           68 --EKENVVISTGGGLGANEEALNF----MK----SRGTTVFIDIPFEVFLERCKDSKER-----P-L-------------  118 (168)
T ss_dssp             --TSSSEEEECCHHHHTCHHHHHH----HH----TTSEEEEEECCHHHHHHHCBCTTCC-----B-G-------------
T ss_pred             --ccCCeEEECCCCEeCCHHHHHH----HH----cCCEEEEEECCHHHHHHHHhCCCCC-----C-C-------------
Confidence              23456665 32  122222221    21    2589999999999999999876310     0 0             


Q ss_pred             CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                            ..   +..+.+++++..       ....|.. ..++. +++.+++++++.|.+.+.
T Consensus       119 ------~~---~~~~~i~~~~~~-------~~~~~~~-~~~~i-~~~~~~~~~~~~i~~~l~  162 (168)
T 2pt5_A          119 ------LK---RPLDEIKNLFEE-------RRKIYSK-ADIKV-KGEKPPEEVVKEILLSLE  162 (168)
T ss_dssp             ------GG---SCGGGTHHHHHH-------HHHHHTT-SSEEE-ECSSCHHHHHHHHHHHHH
T ss_pred             ------Cc---chHHHHHHHHHH-------HHHHHHh-CCEEE-CCCCCHHHHHHHHHHHHH
Confidence                  00   111223333221       1123333 34555 777999999999998875

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.63  E-value=1.1e-15  Score=118.54  Aligned_cols=102  Identities=24%  Similarity=0.276  Sum_probs=62.9

Q ss_pred             cccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCCCCCCce-
Q 025529           41 WLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQKGF-  118 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~ll~~~l~~~~~~~~~-  118 (251)
                      +|+|+|||||||+++.|++++|++++++|.++++..      |..+.+++.. |..........++.....    ...+ 
T Consensus        11 ~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~------g~~~~~~~~~~g~~~~~~~~~~~l~~~~~----~~~~~   80 (168)
T 1zuh_A           11 VLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV------GLSVREIFEELGEDNFRMFEKNLIDELKT----LKTPH   80 (168)
T ss_dssp             EEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHTCHHHHHHHHHHHHHHHHT----CSSCC
T ss_pred             EEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh------CCCHHHHHHHhCHHHHHHHHHHHHHHHHh----cCCCE
Confidence            344999999999999999999999999999887643      2223333322 221111222233333221    1233 


Q ss_pred             EEe-C--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          119 ILD-G--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       119 Iid-g--~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                      |+. |  ++.. ..       +    ..++.+|+|++|++++.+|+..|
T Consensus        81 Vi~~g~g~~~~-~~-------l----~~~~~vi~l~~~~e~~~~Rl~~r  117 (168)
T 1zuh_A           81 VISTGGGIVMH-EN-------L----KGLGTTFYLKMDFETLIKRLNQK  117 (168)
T ss_dssp             EEECCGGGGGC-GG-------G----TTSEEEEEEECCHHHHHHHHCC-
T ss_pred             EEECCCCEech-hH-------H----hcCCEEEEEECCHHHHHHHHhcc
Confidence            443 2  2222 11       1    23679999999999999999877

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.62  E-value=4e-15  Score=121.75  Aligned_cols=178  Identities=19%  Similarity=0.198  Sum_probs=101.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC---CCcCHHHHH----
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG---ELVSDDLVV----  102 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~----  102 (251)
                      -+++.|+|+     |++||||||+++.|++.++...+++..+++.  +.++++|..+++++..+   ..+......    
T Consensus        25 ~~~~~i~~e-----G~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~   97 (236)
T 3lv8_A           25 MNAKFIVIE-----GLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVY   97 (236)
T ss_dssp             -CCCEEEEE-----ESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHH
T ss_pred             CCCeEEEEE-----CCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHH
Confidence            367889999     9999999999999999984332321111121  35678999999998632   233332221    


Q ss_pred             ----HHHHHHHc-CCCCCCceEEeCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          103 ----GIIDEAMK-KPSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       103 ----~ll~~~l~-~~~~~~~~Iidg~~~~------------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                          +.+...+. .+..++.+|.|.|..+            ......+..+ ...+..||++|+|++|++++.+|+..|.
T Consensus        98 A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~-~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~  176 (236)
T 3lv8_A           98 AARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQT-ALGDFKPDLTLYLDIDPKLGLERARGRG  176 (236)
T ss_dssp             HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHH-HhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence                11111111 1122345677865221            2222223222 2235789999999999999999999874


Q ss_pred             CCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHH-HHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHH
Q 025529          166 IHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLE-AFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSE  244 (251)
Q Consensus       166 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~-~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~  244 (251)
                      ..    .                        +.+.....+.+|+. .|..       ++...+.++.||++.++++|.++
T Consensus       177 ~~----d------------------------r~E~~~~~~~~rv~~~y~~-------la~~~~~~~vIDa~~sieeV~~~  221 (236)
T 3lv8_A          177 EL----D------------------------RIEKMDISFFERARERYLE-------LANSDDSVVMIDAAQSIEQVTAD  221 (236)
T ss_dssp             CC----C------------------------TTTTSCHHHHHHHHHHHHH-------HHHHCTTEEEEETTSCHHHHHHH
T ss_pred             Cc----c------------------------hhhhhHHHHHHHHHHHHHH-------HHHHCCCEEEEeCCCCHHHHHHH
Confidence            10    0                        11111123333432 3322       22222348999999999999999


Q ss_pred             HHHHhc
Q 025529          245 VQKALS  250 (251)
Q Consensus       245 i~~~l~  250 (251)
                      |.++|+
T Consensus       222 I~~~l~  227 (236)
T 3lv8_A          222 IRRALQ  227 (236)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988774

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.62  E-value=9.1e-15  Score=117.10  Aligned_cols=160  Identities=16%  Similarity=0.156  Sum_probs=91.5

Q ss_pred             ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCC-----cC-----------------
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL-----VS-----------------   97 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~-----~~-----------------   97 (251)
                      |+|+|++||||||+++.|++ +|+++++.|++.+....++......+.+.+.....     +.                 
T Consensus         5 i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~~~   83 (206)
T 1jjv_A            5 VGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDKLW   83 (206)
T ss_dssp             EEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHHHH
Confidence            33449999999999999988 99999999998776443333222222222211110     00                 


Q ss_pred             -HHHHHHH----HHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCc
Q 025529           98 -DDLVVGI----IDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGR  172 (251)
Q Consensus        98 -~~~~~~l----l~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~  172 (251)
                       .......    +...+... ...++|+|+ |......  +.       ..++.+|+|++|++++.+|+..|.       
T Consensus        84 l~~~~~p~v~~~~~~~~~~~-~~~~vv~~~-~~l~e~~--~~-------~~~d~vi~l~~~~e~~~~Rl~~R~-------  145 (206)
T 1jjv_A           84 LNNLLHPAIRERMKQKLAEQ-TAPYTLFVV-PLLIENK--LT-------ALCDRILVVDVSPQTQLARSAQRD-------  145 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC-CSSEEEEEC-TTTTTTT--CG-------GGCSEEEEEECCHHHHHHHHC----------
T ss_pred             HHhccCHHHHHHHHHHHHhc-CCCEEEEEe-chhhhcC--cH-------hhCCEEEEEECCHHHHHHHHHHcC-------
Confidence             0011111    11222222 234677786 3222111  11       246899999999999999998773       


Q ss_pred             eecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChh----HHHHHHHHH
Q 025529          173 TYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQ----EVTSEVQKA  248 (251)
Q Consensus       173 ~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~e----ev~~~i~~~  248 (251)
                                                +.+.+.+.+|+...    .+..+.+...+  +.||++.+++    ++.++|.+.
T Consensus       146 --------------------------~~~~e~~~~r~~~q----~~~~~~~~~ad--~vIdn~~~~~~~~~~~~~~i~~~  193 (206)
T 1jjv_A          146 --------------------------NNNFEQIQRIMNSQ----VSQQERLKWAD--DVINNDAELAQNLPHLQQKVLEL  193 (206)
T ss_dssp             ----------------------------CHHHHHHHHHHS----CCHHHHHHHCS--EEEECCSCHHHHHHHHHHHHHHH
T ss_pred             --------------------------CCCHHHHHHHHHhc----CChHHHHHhCC--EEEECCCCccccHHHHHHHHHHH
Confidence                                      22456677776541    12233333323  4678888999    999998876


Q ss_pred             hc
Q 025529          249 LS  250 (251)
Q Consensus       249 l~  250 (251)
                      ++
T Consensus       194 ~~  195 (206)
T 1jjv_A          194 HQ  195 (206)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.62  E-value=9.1e-15  Score=116.64  Aligned_cols=166  Identities=13%  Similarity=0.057  Sum_probs=101.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh-CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH----
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII----  105 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll----  105 (251)
                      +++.|+|+     |+|||||||+++.|++++ |+++++++...     ..++.|..+++++..+........ .++    
T Consensus         3 ~~~~I~l~-----G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~   71 (204)
T 2v54_A            3 RGALIVFE-----GLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIV-NLLFCAN   71 (204)
T ss_dssp             CCCEEEEE-----CCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHH
T ss_pred             CCcEEEEE-----cCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHH
Confidence            57789999     999999999999999999 68777764211     134567778888876554443322 111    


Q ss_pred             --------HHHHcCCCCCCceEEeCCCCCHHH--------HHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025529          106 --------DEAMKKPSCQKGFILDGFPRTEVQ--------AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS  169 (251)
Q Consensus       106 --------~~~l~~~~~~~~~Iidg~~~~~~~--------~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~  169 (251)
                              ...+   .....+|+|+|+.+...        ...+.. +......|+.+|||++|++++.+   .|..+  
T Consensus        72 r~~~~~~i~~~l---~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~-~~~~~~~~d~vi~l~~~~e~~~~---~R~~d--  142 (204)
T 2v54_A           72 RWEFASFIQEQL---EQGITLIVDRYAFSGVAYAAAKGASMTLSKS-YESGLPKPDLVIFLESGSKEINR---NVGEE--  142 (204)
T ss_dssp             HHTTHHHHHHHH---HTTCEEEEESCHHHHHHHHHHTTCCHHHHHH-HHTTSBCCSEEEEECCCHHHHTT---CCSSS--
T ss_pred             HHHHHHHHHHHH---HCCCEEEEECchhhHHHHHHccCCCHHHHHH-HhcCCCCCCEEEEEeCCHHHHHh---hcCcc--
Confidence                    1111   12346888998764321        111221 22222468999999999998877   33200  


Q ss_pred             CCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          170 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                                                 +.+  ...+.+|+...+....   ..  ....++.||++.+++++++.|.+.|
T Consensus       143 ---------------------------~~e--~~~~~~rl~~~y~~~~---~~--~~~~~~~Id~~~~~~~v~~~i~~~l  188 (204)
T 2v54_A          143 ---------------------------IYE--DVTFQQKVLQEYKKMI---EE--GDIHWQIISSEFEEDVKKELIKNIV  188 (204)
T ss_dssp             ---------------------------TTC--CSHHHHHHHHHHHHHH---TT--CSSCEEEECTTSCHHHHHHHHHHHH
T ss_pred             ---------------------------ccc--HHHHHHHHHHHHHHHH---Hh--CCCcEEEEECCCCHHHHHHHHHHHH
Confidence                                       001  1244555544222111   11  1236789999999999999998877


Q ss_pred             c
Q 025529          250 S  250 (251)
Q Consensus       250 ~  250 (251)
                      .
T Consensus       189 ~  189 (204)
T 2v54_A          189 I  189 (204)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.61  E-value=1.9e-14  Score=111.82  Aligned_cols=160  Identities=14%  Similarity=0.158  Sum_probs=93.4

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS  113 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~  113 (251)
                      .|+|.     |+|||||||+++.|++++|+++++.|.+++..  .+......+..   .+..........++ ..+.   
T Consensus         4 ~I~l~-----G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~--~g~~~~~~~~~---~~~~~~~~~~~~~~-~~l~---   69 (173)
T 1e6c_A            4 PIFMV-----GARGCGMTTVGRELARALGYEFVDTDIFMQHT--SGMTVADVVAA---EGWPGFRRRESEAL-QAVA---   69 (173)
T ss_dssp             CEEEE-----SCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH--HCSCHHHHHHH---HHHHHHHHHHHHHH-HHHC---
T ss_pred             eEEEE-----CCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH--hCCCHHHHHHH---cCHHHHHHHHHHHH-HHhh---
Confidence            46666     99999999999999999999999999987764  12222111110   01101111111222 2222   


Q ss_pred             CCCceEEe-CC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh--cCcCCCCCCceecccCCCCCCCCCCC
Q 025529          114 CQKGFILD-GF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT--GRWIHPSSGRTYHTKFAPPKVPGVDD  188 (251)
Q Consensus       114 ~~~~~Iid-g~--~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~--~r~~~~~~~~~~~~~~~~p~~~~~~~  188 (251)
                       ...+|++ |.  +........+.        .++.+|+|++|++++.+|+.  .|..+                     
T Consensus        70 -~~~~vi~~g~~~~~~~~~~~~l~--------~~~~~i~l~~~~e~~~~R~~~~~r~~~---------------------  119 (173)
T 1e6c_A           70 -TPNRVVATGGGMVLLEQNRQFMR--------AHGTVVYLFAPAEELALRLQASLQAHQ---------------------  119 (173)
T ss_dssp             -CSSEEEECCTTGGGSHHHHHHHH--------HHSEEEEEECCHHHHHHHHHHHHCSCC---------------------
T ss_pred             -cCCeEEECCCcEEeCHHHHHHHH--------cCCeEEEEECCHHHHHHHHhhccCCCC---------------------
Confidence             2346664 42  22222222221        14799999999999999998  66210                     


Q ss_pred             CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529          189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS  250 (251)
Q Consensus       189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~  250 (251)
                              ++....+...+++..++....+   +|..  ..+.||++ .+++++++.|.+.++
T Consensus       120 --------r~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~Id~~~~~~~~~~~~i~~~l~  169 (173)
T 1e6c_A          120 --------RPTLTGRPIAEEMEAVLREREA---LYQD--VAHYVVDATQPPAAIVCELMQTMR  169 (173)
T ss_dssp             --------CCCTTHHHHHHHHHHHHHHHHH---HHHH--HCSEEEETTSCHHHHHHHHHHHTT
T ss_pred             --------CCcCCCCCHHHHHHHHHHHHHH---HHHh--CcEEEECCCCCHHHHHHHHHHHhc
Confidence                    1222223445555555444333   2322  23467888 899999999998875

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.61  E-value=4.8e-15  Score=116.56  Aligned_cols=162  Identities=19%  Similarity=0.254  Sum_probs=89.2

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHH-cCCCcCHHHHHHHHHHHHcC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKK  111 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~ll~~~l~~  111 (251)
                      +.|+|.     |+|||||||+|+.|++++|+++++.|++++...  +..    +.+++. .|..........++...+..
T Consensus         3 ~~I~l~-----G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~--g~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~   71 (184)
T 2iyv_A            3 PKAVLV-----GLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRS----IADIFATDGEQEFRRIEEDVVRAALAD   71 (184)
T ss_dssp             CSEEEE-----CSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSC----HHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEE-----CCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc--CCC----HHHHHHHhChHHHHHHHHHHHHHHHhc
Confidence            356777     999999999999999999999999999887643  111    122221 12111122222233322211


Q ss_pred             CCCCCceEE-eCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529          112 PSCQKGFIL-DGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT  190 (251)
Q Consensus       112 ~~~~~~~Ii-dg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~  190 (251)
                          ..+|+ +|...... .... ..+.     .+.+|+|++|.+++.+|+..|...+                      
T Consensus        72 ----~~~vi~~g~~~v~~-~~~~-~~l~-----~~~vV~L~~~~e~~~~Rl~~r~~r~----------------------  118 (184)
T 2iyv_A           72 ----HDGVLSLGGGAVTS-PGVR-AALA-----GHTVVYLEISAAEGVRRTGGNTVRP----------------------  118 (184)
T ss_dssp             ----CCSEEECCTTGGGS-HHHH-HHHT-----TSCEEEEECCHHHHHHHTTCCCCCS----------------------
T ss_pred             ----CCeEEecCCcEEcC-HHHH-HHHc-----CCeEEEEeCCHHHHHHHHhCCCCCC----------------------
Confidence                12333 33211111 1111 1111     4579999999999999998773100                      


Q ss_pred             CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529          191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS  250 (251)
Q Consensus       191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~  250 (251)
                         +. ...+..    .++..+.....   .+|.... .+.||++ .+++++++.|.+.+.
T Consensus       119 ---~~-~~~~~~----~~i~~~~~~r~---~~~~~~~-~~~Idt~~~s~ee~~~~I~~~l~  167 (184)
T 2iyv_A          119 ---LL-AGPDRA----EKYRALMAKRA---PLYRRVA-TMRVDTNRRNPGAVVRHILSRLQ  167 (184)
T ss_dssp             ---ST-TSCCHH----HHHHHHHHHHH---HHHHHHC-SEEEECSSSCHHHHHHHHHTTSC
T ss_pred             ---Cc-cCCCHH----HHHHHHHHHHH---HHHhccC-CEEEECCCCCHHHHHHHHHHHHh
Confidence               00 011212    22333322222   2232212 3578988 899999999988764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.61  E-value=1.7e-14  Score=111.79  Aligned_cols=147  Identities=18%  Similarity=0.158  Sum_probs=87.4

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS  113 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~  113 (251)
                      .|+|+     |+|||||||+++.|++++++++++.+.+.....    .    +...+            ... ..+.   
T Consensus         3 ~i~l~-----G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~----~~~~~------------~~~-~~l~---   53 (173)
T 3kb2_A            3 LIILE-----GPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----G----NEKLF------------EHF-NKLA---   53 (173)
T ss_dssp             EEEEE-----CSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----C----HHHHH------------HHH-HHHT---
T ss_pred             EEEEE-----CCCCCCHHHHHHHHHHHhCCeeecCcccccchh----H----HHHHH------------HHH-HHHH---
Confidence            45555     999999999999999999999999987654311    0    01110            111 1111   


Q ss_pred             CCCceEEeCCC---------------CCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccC
Q 025529          114 CQKGFILDGFP---------------RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKF  178 (251)
Q Consensus       114 ~~~~~Iidg~~---------------~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~  178 (251)
                      ....+|.|.+.               ........+..    ....|+.+|||++|++++.+|+..|..            
T Consensus        54 ~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~i~l~~~~e~~~~R~~~r~r------------  117 (173)
T 3kb2_A           54 DEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIED----KIKAKAKVVYLHADPSVIKKRLRVRGD------------  117 (173)
T ss_dssp             TCCSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHH----HHTTTEEEEEEECCHHHHHHHHHHHSC------------
T ss_pred             hCCCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhc----cCCCCCEEEEEeCCHHHHHHHHHhcCC------------
Confidence            12344555321               11222222222    224688999999999999999988731            


Q ss_pred             CCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529          179 APPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS  250 (251)
Q Consensus       179 ~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~  250 (251)
                                         +....+.+++....|    ......|.  ...+.||++ .++++++++|.+.++
T Consensus       118 -------------------~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~  165 (173)
T 3kb2_A          118 -------------------EYIEGKDIDSILELY----REVMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVE  165 (173)
T ss_dssp             -------------------SCCCHHHHHHHHHHH----HHHHHTCS--SCEEEEETTTSCHHHHHHHHHHHHH
T ss_pred             -------------------cchhhhHHHHHHHHH----HHHHhhcC--CCEEEEECCCCCHHHHHHHHHHHHh
Confidence                               111222222222332    22233332  257789998 599999999998774

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.61  E-value=2.5e-14  Score=114.60  Aligned_cols=161  Identities=12%  Similarity=0.075  Sum_probs=106.6

Q ss_pred             ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHH---------------
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDD---------------   99 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~---------------   99 (251)
                      |+|+|++||||||+++.|++ +|++++++|.+.++.+.++.+....+.+.+..+     +.+...               
T Consensus        12 iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~~~   90 (210)
T 4i1u_A           12 IGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDARRR   90 (210)
T ss_dssp             EEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHHHH
Confidence            45669999999999999998 999999999999988887777666666665422     223321               


Q ss_pred             ---HHHHHHH----HHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCc
Q 025529          100 ---LVVGIID----EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGR  172 (251)
Q Consensus       100 ---~~~~ll~----~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~  172 (251)
                         ++...+.    ..+... ....+|+|. |...+.. .+.       ..+|.+|++++|+++.++|+..|.       
T Consensus        91 L~~i~HP~I~~~~~~~~~~~-~~~~vv~d~-pLL~E~~-~~~-------~~~D~vi~V~ap~e~r~~Rl~~Rd-------  153 (210)
T 4i1u_A           91 LEAITHPLIRAETEREARDA-QGPYVIFVV-PLLVESR-NWK-------ARCDRVLVVDCPVDTQIARVMQRN-------  153 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC-CSSSEEEEC-TTCTTCH-HHH-------HHCSEEEEEECCHHHHHHHHHHHH-------
T ss_pred             HHHHhhHHHHHHHHHHHHhc-CCCEEEEEE-ecccccC-Ccc-------ccCCeEEEEECCHHHHHHHHHhcC-------
Confidence               2222222    222222 223456664 5443311 111       236899999999999999999873       


Q ss_pred             eecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529          173 TYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS  250 (251)
Q Consensus       173 ~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~  250 (251)
                                                +.+.+.+++|+...    .+..+.....+  ++||++ ++++++.++|.+.++
T Consensus       154 --------------------------g~s~eea~~ri~~Q----~~~eek~~~AD--~VIdN~~gsle~l~~qV~~l~~  200 (210)
T 4i1u_A          154 --------------------------GFTREQVEAIIARQ----ATREARLAAAD--DVIVNDAATPDALAVQVDALHQ  200 (210)
T ss_dssp             --------------------------CCCHHHHHHHHHHS----CCHHHHHHTCS--EEEECSSCCHHHHHHHHHHHHH
T ss_pred             --------------------------CCCHHHHHHHHHHc----CChHHHHHhCC--EEEECCCCCHHHHHHHHHHHHH
Confidence                                      45667888887652    22333333322  357888 899999999987653

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.58  E-value=3.9e-14  Score=113.44  Aligned_cols=176  Identities=15%  Similarity=0.115  Sum_probs=94.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc--eechhHHHHHHHHcCCchHHHHHHHHHcCC---CcCHHHH----
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRAAVAAKTPLGIKAKEAMDKGE---LVSDDLV----  101 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~--~i~~~~li~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~----  101 (251)
                      +++.|+|+     |+|||||||+++.|+++++..  ++.++.          +.+..+++++..+.   .......    
T Consensus         3 ~~~~I~i~-----G~~GsGKsT~~~~L~~~l~~~g~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~   67 (213)
T 2plr_A            3 KGVLIAFE-----GIDGSGKSSQATLLKDWIELKRDVYLTEW----------NSSDWIHDIIKEAKKKDLLTPLTFSLIH   67 (213)
T ss_dssp             CCEEEEEE-----CCTTSSHHHHHHHHHHHHTTTSCEEEEET----------TCCCHHHHHHHHHTTTSCCCHHHHHHHH
T ss_pred             CCeEEEEE-----cCCCCCHHHHHHHHHHHHhhcCCEEEecC----------CcHHHHHHHHhccccccCCCHHHHHHHH
Confidence            46788888     999999999999999999763  443210          12222333332211   1111100    


Q ss_pred             --------HHHHHHHHcCCCCCCceEEeCCCCCHHHH--------HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh-cC
Q 025529          102 --------VGIIDEAMKKPSCQKGFILDGFPRTEVQA--------QKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT-GR  164 (251)
Q Consensus       102 --------~~ll~~~l~~~~~~~~~Iidg~~~~~~~~--------~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~-~r  164 (251)
                              ...+...+   ..+..+|+|+++.+....        ..+.. +......++++|+|++|++++.+|+. .|
T Consensus        68 ~~~r~~~~~~~i~~~l---~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R  143 (213)
T 2plr_A           68 ATDFSDRYERYILPML---KSGFIVISDRYIYTAYARDSVRGVDIDWVKK-LYSFAIKPDITFYIRVSPDIALERIKKSK  143 (213)
T ss_dssp             HHHHHHHHHHTHHHHH---HTTCEEEEESCHHHHHHHHHTTTCCHHHHHH-HTTTSCCCSEEEEEECCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHH---hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHH-HHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence                    01111112   123468899987643211        11222 22222458999999999999999998 66


Q ss_pred             cCCCCCCceecccCCCCCCCCCCCCCCCCcccCCC--CcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHH
Q 025529          165 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD--DTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVT  242 (251)
Q Consensus       165 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~--~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~  242 (251)
                      ..   .++ ++        .+.      .+..+.+  +....+.+|+..++..+.      .. ..++.||++.++++++
T Consensus       144 ~~---~~~-~~--------~g~------~~~~~~d~~e~~~~~~~r~~~~~~~~~------~~-~~~~~Id~~~~~e~v~  198 (213)
T 2plr_A          144 RK---IKP-QE--------AGA------DIFPGLSPEEGFLKYQGLITEVYDKLV------KD-ENFIVIDGTKTPKEIQ  198 (213)
T ss_dssp             CC---CCT-TT--------TTT------TTCTTSCHHHHHHHHHHHHHHHHHHHT------TT-TTCEEEETTSCHHHHH
T ss_pred             cc---ccc-cc--------ccc------ccccccchhhhHHHHHHHHHHHHHHHH------hh-CCEEEEECCCCHHHHH
Confidence            31   011 10        000      0001111  111344555444333221      11 1578899999999999


Q ss_pred             HHHHHHhc
Q 025529          243 SEVQKALS  250 (251)
Q Consensus       243 ~~i~~~l~  250 (251)
                      +.|.+.|+
T Consensus       199 ~~I~~~l~  206 (213)
T 2plr_A          199 IQIRKFVG  206 (213)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988774

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.57  E-value=1.9e-14  Score=116.31  Aligned_cols=164  Identities=17%  Similarity=0.178  Sum_probs=98.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-----CCCcCHHHHH---
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-----GELVSDDLVV---  102 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~---  102 (251)
                      +++.|+|.     |++||||||+++.|++ +|++++++|.+.+....++......+.+.+..     ...+....+.   
T Consensus         3 ~~~~I~i~-----G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~   76 (218)
T 1vht_A            3 LRYIVALT-----GGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERI   76 (218)
T ss_dssp             CCEEEEEE-----CCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHH
T ss_pred             CceEEEEE-----CCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHH
Confidence            45677888     9999999999999998 99999999998877554444444444443321     1112221111   


Q ss_pred             ---------------HHHH----HHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhc
Q 025529          103 ---------------GIID----EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG  163 (251)
Q Consensus       103 ---------------~ll~----~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~  163 (251)
                                     ..+.    ..+...  ..++++.+.|......  +.       ..++.+|||++|++++.+|+..
T Consensus        77 f~~~~~~~~l~~~~~p~v~~~~~~~~~~~--~~~~vi~~~~~l~~~~--~~-------~~~d~vi~l~~~~e~~~~Rl~~  145 (218)
T 1vht_A           77 FANPEEKNWLNALLHPLIQQETQHQIQQA--TSPYVLWVVPLLVENS--LY-------KKANRVLVVDVSPETQLKRTMQ  145 (218)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHHHHHHHC--CSSEEEEECTTTTTTT--GG-------GGCSEEEEEECCHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHhHCHHHHHHHHHHHHhc--CCCEEEEEeeeeeccC--cc-------ccCCEEEEEECCHHHHHHHHHH
Confidence                           1111    111111  2234444445432221  11       2478999999999999999987


Q ss_pred             CcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHH
Q 025529          164 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTS  243 (251)
Q Consensus       164 r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~  243 (251)
                      |.                                 ..+.+.+++++...   . +...++....  +.||++.+++++.+
T Consensus       146 R~---------------------------------~~~~~~~~~~~~~~---~-~~~~~~~~ad--~vId~~~~~~~~~~  186 (218)
T 1vht_A          146 RD---------------------------------DVTREHVEQILAAQ---A-TREARLAVAD--DVIDNNGAPDAIAS  186 (218)
T ss_dssp             HH---------------------------------TCCHHHHHHHHHHS---C-CHHHHHHHCS--EEEECSSCTTSHHH
T ss_pred             cC---------------------------------CCCHHHHHHHHHhc---C-ChHHHHHhCC--EEEECCCCHHHHHH
Confidence            63                                 22345566665542   1 1222222222  46888889999999


Q ss_pred             HHHHHhc
Q 025529          244 EVQKALS  250 (251)
Q Consensus       244 ~i~~~l~  250 (251)
                      .|.+.++
T Consensus       187 ~I~~~l~  193 (218)
T 1vht_A          187 DVARLHA  193 (218)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.57  E-value=1.1e-13  Score=108.93  Aligned_cols=114  Identities=19%  Similarity=0.351  Sum_probs=72.5

Q ss_pred             ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHH-hCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCc---CHHHHH
Q 025529           27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE-YCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELV---SDDLVV  102 (251)
Q Consensus        27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~-~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~  102 (251)
                      +.+.+++.|+++     |+|||||||+++.|++. +|++++++|+++++. .-...++..    +.. ..+   ++....
T Consensus         5 ~~~~~~~~I~l~-----G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-~~~~~~~~~----~~~-~~~~r~~~~~~~   73 (184)
T 1y63_A            5 MEQPKGINILIT-----GTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDTE----LDT-HIIEEKDEDRLL   73 (184)
T ss_dssp             -CCCSSCEEEEE-----CSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC----------C-CCCCHHHHHHHH
T ss_pred             cCCCCCCEEEEE-----CCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-hhhhhHHHH----hhh-cccCCCCHHHHH
Confidence            445667889999     99999999999999999 799999999998763 111112211    111 112   223333


Q ss_pred             HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          103 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       103 ~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ..+...+..   ..++++|......     +.    .  ..++.+|+|++|.+++.+|+..|.
T Consensus        74 ~~l~~~~~~---~g~~vi~~~~~~~-----~~----~--~~~~~vi~l~~~~e~~~~Rl~~R~  122 (184)
T 1y63_A           74 DFMEPIMVS---RGNHVVDYHSSEL-----FP----E--RWFHMVVVLHTSTEVLFERLTKRQ  122 (184)
T ss_dssp             HHHHHHHTS---SSEEEEECSCCTT-----SC----G--GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             HHHHHHHhc---cCCEEEeCchHhh-----hh----h--ccCCEEEEEECCHHHHHHHHHhCC
Confidence            334443322   3467888653211     00    0  125789999999999999999873

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.57  E-value=2.4e-14  Score=113.07  Aligned_cols=124  Identities=15%  Similarity=0.168  Sum_probs=74.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM  109 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l  109 (251)
                      .+++.|++.     |+|||||||+++.|++++|+++++.|.+...........+......+..   .-...+...+...+
T Consensus         3 ~~~~~I~l~-----G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l   74 (193)
T 2rhm_A            3 QTPALIIVT-----GHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATIL   74 (193)
T ss_dssp             SCCEEEEEE-----ESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             CCCeEEEEE-----CCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHH
Confidence            356788888     9999999999999999999999999876544322100000100000000   00011112222222


Q ss_pred             cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      .   .+.++|+|++.........+.. +...+..++.+|+|++|++++.+|+..|.
T Consensus        75 ~---~g~~vi~d~~~~~~~~~~~~~~-l~~~~~~~~~~v~l~~~~e~~~~R~~~R~  126 (193)
T 2rhm_A           75 Q---SGQSLIMESNFRVDLDTERMQN-LHTIAPFTPIQIRCVASGDVLVERILSRI  126 (193)
T ss_dssp             H---TTCCEEEEECCCHHHHHHHHHH-HHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred             h---CCCeEEEecCCCCHHHHHHHHH-HHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence            2   3457999998732222223322 33334567899999999999999998774

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.56  E-value=5.3e-15  Score=119.93  Aligned_cols=173  Identities=13%  Similarity=0.042  Sum_probs=92.0

Q ss_pred             ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC----ceec-hhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHH
Q 025529           27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL----CHLA-TGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV  101 (251)
Q Consensus        27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~----~~i~-~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~  101 (251)
                      +...+++.|+|+     |++||||||+++.|+++++.    .++. +.      .+.+++.|..+++++...........
T Consensus        16 ~~~~~~~~i~~~-----G~~g~GKst~~~~l~~~l~~~~g~~v~~~tr------eP~~t~~g~~ir~~l~~~~~~~~~~e   84 (223)
T 3ld9_A           16 TQGPGSMFITFE-----GIDGSGKTTQSHLLAEYLSEIYGVNNVVLTR------EPGGTLLNESVRNLLFKAQGLDSLSE   84 (223)
T ss_dssp             ---CCCEEEEEE-----CSTTSSHHHHHHHHHHHHHHHHCGGGEEEEE------SSCSSHHHHHHHHHHHTCSSCCHHHH
T ss_pred             ccCCCCeEEEEE-----CCCCCCHHHHHHHHHHHHhhccCceeeEeee------CCCCChHHHHHHHHHhCCCCCCHHHH
Confidence            345678999999     99999999999999998754    3322 21      13456788888888875332433322


Q ss_pred             H-HHHHHHHcC--------CCCCCceEEeCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025529          102 V-GIIDEAMKK--------PSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER  160 (251)
Q Consensus       102 ~-~ll~~~l~~--------~~~~~~~Iidg~~~~------------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~R  160 (251)
                      . -....+...        +..++.+|.|.|..+            ......+...+. . ..||++|||++|+++..+|
T Consensus        85 ~llf~a~R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~-~-~~PDl~I~Ldv~~e~~~~R  162 (223)
T 3ld9_A           85 LLFFIAMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVI-D-VYPDITFIIDVDINESLSR  162 (223)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHC-S-SCCSEEEEEECC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhh-c-CCCCeEEEEeCCHHHHHHH
Confidence            1 111111111        112345677876421            222233333222 2 6899999999999999999


Q ss_pred             HhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhH
Q 025529          161 ITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQE  240 (251)
Q Consensus       161 l~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~ee  240 (251)
                      + .+.                               |.+.....+.+|+...+..   +.+.+  .+.++.||++.++++
T Consensus       163 i-~rd-------------------------------r~E~~~~e~~~rv~~~y~~---la~~~--~~~~~vIDa~~siee  205 (223)
T 3ld9_A          163 S-CKN-------------------------------GYEFADMEFYYRVRDGFYD---IAKKN--PHRCHVITDKSETYD  205 (223)
T ss_dssp             -----------------------------------------CHHHHHHHHHHHHH---HHHHC--TTTEEEEESSCSSSC
T ss_pred             h-ccC-------------------------------ccccchHHHHHHHHHHHHH---HHHHC--CCCEEEEcCCCCHHH
Confidence            8 321                               1111112333444322221   22222  246899999999999


Q ss_pred             HHHHHHHHhc
Q 025529          241 VTSEVQKALS  250 (251)
Q Consensus       241 v~~~i~~~l~  250 (251)
                      | ++|.+.|+
T Consensus       206 V-~~I~~~l~  214 (223)
T 3ld9_A          206 I-DDINFVHL  214 (223)
T ss_dssp             C-CHHHHHHH
T ss_pred             H-HHHHHHHH
Confidence            9 99988774

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.56  E-value=2.6e-13  Score=106.31  Aligned_cols=160  Identities=13%  Similarity=0.140  Sum_probs=89.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee-chhHHHHHHHHcCCchHHHHHHHHHcCCCc----C--HHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL-ATGDMLRAAVAAKTPLGIKAKEAMDKGELV----S--DDLVV  102 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i-~~~~li~~~~~~~~~~~~~i~~~l~~~~~~----~--~~~~~  102 (251)
                      .+++.|+|.     |+|||||||+++.|+++++.+++ +.+           ..+..+++++..+...    .  ...+.
T Consensus         3 ~~~~~I~l~-----G~~GsGKST~a~~La~~l~~~~i~d~~-----------~~g~~i~~~~~~g~~~~~~~~~~~~~~~   66 (183)
T 2vli_A            3 MRSPIIWIN-----GPFGVGKTHTAHTLHERLPGSFVFEPE-----------EMGQALRKLTPGFSGDPQEHPMWIPLML   66 (183)
T ss_dssp             --CCEEEEE-----CCC----CHHHHHHHHHSTTCEECCTH-----------HHHHHHHHTSTTCCSCGGGSTTHHHHHH
T ss_pred             CCCeEEEEE-----CCCCCCHHHHHHHHHHhcCCCEEEchh-----------hhHHHHHHhCccccchhhhhHHHHHHHH
Confidence            356788888     99999999999999999999888 421           1222333333211110    0  02223


Q ss_pred             HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCC
Q 025529          103 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPK  182 (251)
Q Consensus       103 ~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~  182 (251)
                      +.+...+..  .+..+|+|+..........+...+...+..+ ..|+|++|++++.+|+..|..                
T Consensus        67 ~~i~~~l~~--~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~-~~i~l~~~~e~~~~R~~~R~~----------------  127 (183)
T 2vli_A           67 DALQYASRE--AAGPLIVPVSISDTARHRRLMSGLKDRGLSV-HHFTLIAPLNVVLERLRRDGQ----------------  127 (183)
T ss_dssp             HHHHHHHHH--CSSCEEEEECCCCHHHHHHHHHHHHHTTCCC-EEEEEECCHHHHHHHHHTC------------------
T ss_pred             HHHHHHHHh--CCCcEEEeeeccCHHHHHHHHHHHHhcCCce-EEEEEeCCHHHHHHHHHhccc----------------
Confidence            344333322  1335777876655544444444444444333 569999999999999998741                


Q ss_pred             CCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529          183 VPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS  250 (251)
Q Consensus       183 ~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~  250 (251)
                                    |+ ...+.++..+..    ..+. . +    .. .||++ .+++++++.|.+.+.
T Consensus       128 --------------r~-~~~~~~~~~~~~----~~~~-~-~----~~-~Id~~~~~~~~~~~~I~~~l~  170 (183)
T 2vli_A          128 --------------PQ-VNVGTVEDRLNE----LRGE-Q-F----QT-HIDTAGLGTQQVAEQIAAQVG  170 (183)
T ss_dssp             -----------------CCHHHHHHHHHH----HTSG-G-G----CS-EEECTTCCHHHHHHHHHHHHT
T ss_pred             --------------cc-hhHHHHHHHHHh----hccc-c-c----ce-EeeCCCCCHHHHHHHHHHHHH
Confidence                          11 112333332222    2222 2 2    23 78987 899999999998875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.55  E-value=6.3e-15  Score=118.45  Aligned_cols=172  Identities=19%  Similarity=0.165  Sum_probs=95.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHH-----
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGI-----  104 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l-----  104 (251)
                      .+++.|+|+     |+|||||||+++.|+++++..+++++.+ +. ...+++.+..++.++..+..++......+     
T Consensus         7 ~~~~~I~l~-----G~~GsGKsT~~~~L~~~l~~~~~~v~~~-~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r   79 (215)
T 1nn5_A            7 RRGALIVLE-----GVDRAGKSTQSRKLVEALCAAGHRAELL-RF-PERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANR   79 (215)
T ss_dssp             CCCCEEEEE-----ESTTSSHHHHHHHHHHHHHHTTCCEEEE-ES-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred             cCCcEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCcEEEe-eC-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            467889999     9999999999999999986555544221 11 01124556667777766544554432211     


Q ss_pred             ------HHHHHcCCCCCCceEEeCCCCCHH---------HHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025529          105 ------IDEAMKKPSCQKGFILDGFPRTEV---------QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS  169 (251)
Q Consensus       105 ------l~~~l~~~~~~~~~Iidg~~~~~~---------~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~  169 (251)
                            +...+   .....+|+|.+..+-.         ....+. .+......|+.+|+|++|++++.+|+..+. +  
T Consensus        80 ~~~~~~i~~~l---~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~-~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~-~--  152 (215)
T 1nn5_A           80 WEQVPLIKEKL---SQGVTLVVDRYAFSGVAFTGAKENFSLDWCK-QPDVGLPKPDLVLFLQLQLADAAKRGAFGH-E--  152 (215)
T ss_dssp             HTTHHHHHHHH---HTTCEEEEESCHHHHHHHHHTSTTCCHHHHH-GGGTTSBCCSEEEEEECCHHHHHHC------C--
T ss_pred             HHHHHHHHHHH---HCCCEEEEeCCcccHHHHHhhcCCCCHHHHH-HHHhCCCCCCEEEEEeCCHHHHHHHhccCc-c--
Confidence                  11222   1234578885421100         011111 111122358999999999999999986331 0  


Q ss_pred             CCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHH-HHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHH
Q 025529          170 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEA-FHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKA  248 (251)
Q Consensus       170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~-y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~  248 (251)
                                                 +.+.  ..+.+++.. |.....    .+  ...++.||++.+++++++.|.+.
T Consensus       153 ---------------------------~~~~--~~~~~~~~~~~~~~~~----~~--~~~~~~Id~~~~~e~~~~~i~~~  197 (215)
T 1nn5_A          153 ---------------------------RYEN--GAFQERALRCFHQLMK----DT--TLNWKMVDASKSIEAVHEDIRVL  197 (215)
T ss_dssp             ---------------------------TTCS--HHHHHHHHHHHHHHTT----CT--TSCEEEEETTSCHHHHHHHHHHH
T ss_pred             ---------------------------ccch--HHHHHHHHHHHHHHHH----hC--CCCEEEEECCCCHHHHHHHHHHH
Confidence                                       1111  233333322 211110    00  23578899999999999999887


Q ss_pred             hc
Q 025529          249 LS  250 (251)
Q Consensus       249 l~  250 (251)
                      ++
T Consensus       198 l~  199 (215)
T 1nn5_A          198 SE  199 (215)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.55  E-value=4.7e-14  Score=118.62  Aligned_cols=165  Identities=19%  Similarity=0.140  Sum_probs=99.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHHHH----
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV----  101 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~----  101 (251)
                      +++.|+|.     |++||||||+|+.|+ .+|++++++|++.+....++......+.+.+...     +.+....+    
T Consensus        74 ~~~iI~I~-----G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~v  147 (281)
T 2f6r_A           74 GLYVLGLT-----GISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRV  147 (281)
T ss_dssp             TCEEEEEE-----ECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHH
T ss_pred             CCEEEEEE-----CCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHH
Confidence            45667777     999999999999999 5899999999998876655554444433332211     11111100    


Q ss_pred             --------------H----HHHHHHHcCC--CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025529          102 --------------V----GIIDEAMKKP--SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI  161 (251)
Q Consensus       102 --------------~----~ll~~~l~~~--~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl  161 (251)
                                    .    ..+...+...  .....+|+||.......   +       ...++.+|||++|++++.+|+
T Consensus       148 f~~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~-------~~~~d~vI~l~a~~ev~~~Rl  217 (281)
T 2f6r_A          148 FGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAG---W-------QSMVHEVWTVVIPETEAVRRI  217 (281)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTT---G-------GGGCSEEEEEECCHHHHHHHH
T ss_pred             hCCHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccc---h-------HHhCCEEEEEcCCHHHHHHHH
Confidence                          0    0111111111  11245888986322111   1       023689999999999999999


Q ss_pred             hcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHH
Q 025529          162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEV  241 (251)
Q Consensus       162 ~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev  241 (251)
                      ..|.                                 +.+.+.+.+|+...   + +..+++... . +.||++.+++++
T Consensus       218 ~~R~---------------------------------g~s~e~~~~ri~~q---~-~~~~~~~~A-D-~vIdn~~s~eel  258 (281)
T 2f6r_A          218 VERD---------------------------------GLSEAAAQSRLQSQ---M-SGQQLVEQS-N-VVLSTLWESHVT  258 (281)
T ss_dssp             HHHH---------------------------------CCCHHHHHHHHHTS---C-CHHHHHHTC-S-EEEECSSCHHHH
T ss_pred             HHcC---------------------------------CCCHHHHHHHHHHc---C-ChHhhHhhC-C-EEEECCCCHHHH
Confidence            8773                                 22345566665443   1 123333222 2 457888899999


Q ss_pred             HHHHHHHhc
Q 025529          242 TSEVQKALS  250 (251)
Q Consensus       242 ~~~i~~~l~  250 (251)
                      .+.|.+.++
T Consensus       259 ~~~I~~~l~  267 (281)
T 2f6r_A          259 QSQVEKAWN  267 (281)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=99.55  E-value=2.8e-14  Score=115.23  Aligned_cols=176  Identities=16%  Similarity=0.094  Sum_probs=105.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCC-CcCHHHHHHH-HHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-LVSDDLVVGI-IDEA  108 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~l-l~~~  108 (251)
                      +++.|+|+     |++||||||+++.|+++++....-+    + +...++++|..+++++.... ...+....-+ ...+
T Consensus         4 ~g~~i~~e-----G~~g~GKst~~~~l~~~l~~~~~~~----~-ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R   73 (216)
T 3tmk_A            4 RGKLILIE-----GLDRTGKTTQCNILYKKLQPNCKLL----K-FPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANR   73 (216)
T ss_dssp             CCCEEEEE-----ECSSSSHHHHHHHHHHHHCSSEEEE----E-SSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHhcccceEE----E-ecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHH
Confidence            67899999     9999999999999999998632211    1 12236789999999988654 2333221111 1112


Q ss_pred             HcC-------CCCCCceEEeCCCCCHHHHH--------HHHHH--HHhcCCCcCEEEEE-ecCHHHHHHHHhcCcCCCCC
Q 025529          109 MKK-------PSCQKGFILDGFPRTEVQAQ--------KLDEM--LEKQGKKVDKVLNF-AIDDAVLEERITGRWIHPSS  170 (251)
Q Consensus       109 l~~-------~~~~~~~Iidg~~~~~~~~~--------~l~~~--~~~~~~~~~~vI~L-~~~~e~~~~Rl~~r~~~~~~  170 (251)
                      ...       +..++.+|.|.|..+-.-..        .+.++  +......||++||| ++|++++.+|+..+.     
T Consensus        74 ~~~~~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~-----  148 (216)
T 3tmk_A           74 WEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD-----  148 (216)
T ss_dssp             HTTHHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC-----
T ss_pred             HHHHHHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc-----
Confidence            210       11234567788743321110        12221  12234689999999 999999998865321     


Q ss_pred             CceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHH-HHHHHhhCCcEEEEc-CCCChhHHHHHHHHH
Q 025529          171 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP-VIDYYSKKGIVAQLH-AEKPPQEVTSEVQKA  248 (251)
Q Consensus       171 ~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~-~~~~~~~~~~~~~id-~~~~~eev~~~i~~~  248 (251)
                       +                        |.+ . ..+.+|+...+..+.. ...  ...+.++.|| ++.++++|.+.|.+.
T Consensus       149 -d------------------------r~E-~-~~f~~rvr~~Y~~la~~~~~--~~~~~~~vID~a~~s~eeV~~~I~~~  199 (216)
T 3tmk_A          149 -E------------------------RYE-T-VKFQEKVKQTFMKLLDKEIR--KGDESITIVDVTNKGIQEVEALIWQI  199 (216)
T ss_dssp             -C------------------------TTC-C-HHHHHHHHHHHHHHHHHHHH--TTCCSEEEEECTTCCHHHHHHHHHHH
T ss_pred             -c------------------------ccc-H-HHHHHHHHHHHHHHHHhccc--cCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence             0                        111 1 3455555443333221 111  1235799999 899999999999887


Q ss_pred             hc
Q 025529          249 LS  250 (251)
Q Consensus       249 l~  250 (251)
                      |+
T Consensus       200 i~  201 (216)
T 3tmk_A          200 VE  201 (216)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.54  E-value=3e-14  Score=111.17  Aligned_cols=156  Identities=21%  Similarity=0.215  Sum_probs=89.9

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHH-cCCCcCHHHHHHHHHHHHcCC
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      .|+|.     |+|||||||+++.|++++++++++.|++++....  .    .+...+. .+..........++.. +.  
T Consensus         6 ~i~i~-----G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g--~----~~~~~~~~~g~~~~~~~~~~~~~~-l~--   71 (175)
T 1via_A            6 NIVFI-----GFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN--Q----KVSEIFEQKRENFFREQEQKMADF-FS--   71 (175)
T ss_dssp             CEEEE-----CCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT--S----CHHHHHHHHCHHHHHHHHHHHHHH-HT--
T ss_pred             EEEEE-----cCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC--C----CHHHHHHHcCHHHHHHHHHHHHHH-HH--
Confidence            47777     9999999999999999999999999998765321  1    1222221 1211111112222322 22  


Q ss_pred             CCCCceEEe-CCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILD-GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTG  191 (251)
Q Consensus       113 ~~~~~~Iid-g~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~  191 (251)
                       ....+|++ |.+....  ..|        ...+.+|||++|.+++.+|+..|...                        
T Consensus        72 -~~~~~vi~~g~~~~~~--~~l--------~~~~~~i~l~~~~e~~~~R~~~r~~~------------------------  116 (175)
T 1via_A           72 -SCEKACIATGGGFVNV--SNL--------EKAGFCIYLKADFEYLKKRLDKDEIS------------------------  116 (175)
T ss_dssp             -TCCSEEEECCTTGGGS--TTG--------GGGCEEEEEECCHHHHTTCCCGGGTT------------------------
T ss_pred             -ccCCEEEECCCCEehh--hHH--------hcCCEEEEEeCCHHHHHHHHhcccCC------------------------
Confidence             22345665 5432221  111        12468999999999999998766200                        


Q ss_pred             CCcccCCCCc-HHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529          192 EPLIQRKDDT-AAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS  250 (251)
Q Consensus       192 ~~~~~r~~~~-~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~  250 (251)
                          .|+... .+.+++.+.       ....+|... ..+.||++ .+++++++.|.+.+.
T Consensus       117 ----~r~~~~~~~~i~~~~~-------~r~~~y~~~-~~~~Idt~~~~~eev~~~I~~~l~  165 (175)
T 1via_A          117 ----KRPLFYDEIKAKKLYN-------ERLSKYEQK-ANFILNIENKNIDELLSEIKKVIK  165 (175)
T ss_dssp             ----TSCTTCCHHHHHHHHH-------HHHHHHHHH-CSEEEECTTCCHHHHHHHHHHHHC
T ss_pred             ----CCCCcccHHHHHHHHH-------HHHHHHHhc-CCEEEECCCCCHHHHHHHHHHHHH
Confidence                011211 233332221       122333321 24678998 799999999998875

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.54  E-value=4.8e-14  Score=112.64  Aligned_cols=159  Identities=19%  Similarity=0.183  Sum_probs=92.4

Q ss_pred             cccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHHHH--------------
Q 025529           41 WLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV--------------  101 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~--------------  101 (251)
                      +|+|++||||||+++.|++ +|++++++|++.+....+.......+.+.+...     ..+....+              
T Consensus         5 ~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~~~l   83 (204)
T 2if2_A            5 GLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKLRKL   83 (204)
T ss_dssp             EEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHHHHH
T ss_pred             EEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHHHHH
Confidence            3349999999999999999 999999999988764443333333333322211     11111111              


Q ss_pred             HHHHHHH--------HcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCce
Q 025529          102 VGIIDEA--------MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRT  173 (251)
Q Consensus       102 ~~ll~~~--------l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~  173 (251)
                      ..+....        +........+|+|+.........          ..++.+|||++|++++.+|+..|.        
T Consensus        84 ~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~~~----------~~~~~~i~l~~~~e~~~~Rl~~R~--------  145 (204)
T 2if2_A           84 EEITHRALYKEIEKITKNLSEDTLFILEASLLVEKGTY----------KNYDKLIVVYAPYEVCKERAIKRG--------  145 (204)
T ss_dssp             HHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTTCG----------GGSSEEEEECCCHHHHHHHHHHTC--------
T ss_pred             HHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCCch----------hhCCEEEEEECCHHHHHHHHHHcC--------
Confidence            1111111        11111114677887422111111          236899999999999999998762        


Q ss_pred             ecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          174 YHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       174 ~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                                .+.+.+.+++...   . +...++... . +.||++.+++++.+.|.+.++
T Consensus       146 --------------------------~~~~~~~~~~~~~---~-~~~~~~~~a-d-~vId~~~~~~~~~~~i~~~l~  190 (204)
T 2if2_A          146 --------------------------MSEEDFERRWKKQ---M-PIEEKVKYA-D-YVIDNSGSIEETYKQVKKVYE  190 (204)
T ss_dssp             --------------------------CCHHHHHHHHTTS---C-CHHHHGGGC-S-EECCCSSCHHHHHHHHHHHHH
T ss_pred             --------------------------CCHHHHHHHHHhC---C-ChhHHHhcC-C-EEEECCCCHHHHHHHHHHHHH
Confidence                                      1223455555432   2 122333322 2 468988999999999998774

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.54  E-value=5.7e-13  Score=105.98  Aligned_cols=170  Identities=12%  Similarity=0.039  Sum_probs=90.6

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh----HHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG----DMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA  108 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~----~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~  108 (251)
                      |.|+|+     |++||||||+++.|+++++..++...    .+++..............          .......+ ..
T Consensus         1 ~~I~i~-----G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~r~-~~   64 (205)
T 2jaq_A            1 MKIAIF-----GTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQ----------IYMLTARS-KQ   64 (205)
T ss_dssp             CEEEEE-----CCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHH----------HHHHHHHH-HH
T ss_pred             CEEEEE-----CCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHH----------HHHHHHHH-HH
Confidence            456777     99999999999999999998766431    111111100000000000          00011111 11


Q ss_pred             HcCCCCCCceEEeCCCCCHHH---------------HHHHHHHHHhc----------CCCcCEEEEEecCHHHHHHHHhc
Q 025529          109 MKKPSCQKGFILDGFPRTEVQ---------------AQKLDEMLEKQ----------GKKVDKVLNFAIDDAVLEERITG  163 (251)
Q Consensus       109 l~~~~~~~~~Iidg~~~~~~~---------------~~~l~~~~~~~----------~~~~~~vI~L~~~~e~~~~Rl~~  163 (251)
                      +........+|+|+++....-               ...+..++...          ...++.+|+|++|++++.+|+..
T Consensus        65 ~~~~~~~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~  144 (205)
T 2jaq_A           65 LKQAKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKK  144 (205)
T ss_dssp             HC------CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHH
T ss_pred             HHHhhccCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHH
Confidence            222212235889988764211               11111221111          24689999999999999999987


Q ss_pred             CcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHH
Q 025529          164 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTS  243 (251)
Q Consensus       164 r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~  243 (251)
                      |.      +.+.                     . ..+ ....+++..++.   .+.+.|......+.||++.+++++++
T Consensus       145 R~------r~~~---------------------~-~~~-~~~~~~l~~~~~---~~~~~~~~~~~~~~Id~~~~~~~v~~  192 (205)
T 2jaq_A          145 RG------RSEE---------------------L-LIG-EEYWETLNKNYE---EFYKQNVYDFPFFVVDAELDVKTQIE  192 (205)
T ss_dssp             HT------CHHH---------------------H-HSC-HHHHHHHHHHHH---HHHHHHTTTSCEEEEETTSCHHHHHH
T ss_pred             cC------Chhh---------------------h-cCc-HHHHHHHHHHHH---HHHHHccccCcEEEEECCCCHHHHHH
Confidence            62      1000                     0 001 133444444433   23444542345788999999999999


Q ss_pred             HHHHHhc
Q 025529          244 EVQKALS  250 (251)
Q Consensus       244 ~i~~~l~  250 (251)
                      .|.+.+.
T Consensus       193 ~I~~~l~  199 (205)
T 2jaq_A          193 LIMNKLN  199 (205)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.53  E-value=2.7e-14  Score=120.91  Aligned_cols=124  Identities=18%  Similarity=0.167  Sum_probs=79.0

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh-CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK  111 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~  111 (251)
                      +.|++.     |+|||||||+++.|++++ ++.+++.|. ++......+. +.. ..+...+.......+...+...+..
T Consensus         3 ~~I~l~-----G~~GsGKST~a~~L~~~~~~~~~i~~D~-~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~   74 (301)
T 1ltq_A            3 KIILTI-----GCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYG   74 (301)
T ss_dssp             EEEEEE-----CCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             eEEEEE-----CCCCCCHHHHHHHHHHhCCCcEEecccH-HHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhh
Confidence            467777     999999999999999985 999999984 5554432111 100 0000000000112233344444422


Q ss_pred             CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          112 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       112 ~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ...+.++|+|+++....+...+.++....+. +..+|+|++|.+++.+|+..|.
T Consensus        75 ~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~-~~~~i~l~~~~e~~~~R~~~R~  127 (301)
T 1ltq_A           75 GDSVKGVIISDTNLNPERRLAWETFAKEYGW-KVEHKVFDVPWTELVKRNSKRG  127 (301)
T ss_dssp             CTTCCEEEECSCCCCHHHHHHHHHHHHHTTC-EEEEEECCCCHHHHHHHHHHCG
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHHHHHcCC-cEEEEEEECCHHHHHHHHHhcc
Confidence            1345689999999887777777665544433 3589999999999999999885

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.53  E-value=9.8e-14  Score=115.32  Aligned_cols=163  Identities=18%  Similarity=0.113  Sum_probs=98.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH---hCCcee--chhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE---YCLCHL--ATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII  105 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~---~~~~~i--~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll  105 (251)
                      +++.|++.     |+|||||||+++.|++.   +|+.++  +.|.+. .......+.+...          ........+
T Consensus         3 ~~~lIvl~-----G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~-~~l~~~~~~~e~~----------~~~~~~~~i   66 (260)
T 3a4m_A            3 DIMLIILT-----GLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR-ESFPVWKEKYEEF----------IKKSTYRLI   66 (260)
T ss_dssp             CCEEEEEE-----CCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH-TTSSSCCGGGHHH----------HHHHHHHHH
T ss_pred             CCEEEEEE-----cCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH-HHHhhhhHHHHHH----------HHHHHHHHH
Confidence            46678888     99999999999999998   688877  766543 2111111111110          011112233


Q ss_pred             HHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCC
Q 025529          106 DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG  185 (251)
Q Consensus       106 ~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~  185 (251)
                      ...+.   . ..+|+|+.+........+....... ..++.+|+|++|++++.+|+..|..                   
T Consensus        67 ~~~l~---~-~~vIiD~~~~~~~~~~~l~~~a~~~-~~~~~vi~l~~~~e~~~~R~~~R~~-------------------  122 (260)
T 3a4m_A           67 DSALK---N-YWVIVDDTNYYNSMRRDLINIAKKY-NKNYAIIYLKASLDVLIRRNIERGE-------------------  122 (260)
T ss_dssp             HHHHT---T-SEEEECSCCCSHHHHHHHHHHHHHT-TCEEEEEEEECCHHHHHHHHHHTTC-------------------
T ss_pred             HHHhh---C-CEEEEeCCcccHHHHHHHHHHHHHc-CCCEEEEEEeCCHHHHHHHHHhCCC-------------------
Confidence            33332   2 5789999777666666555544433 3468999999999999999988730                   


Q ss_pred             CCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCC--ChhHHHHHHHHHhc
Q 025529          186 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK--PPQEVTSEVQKALS  250 (251)
Q Consensus       186 ~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~--~~eev~~~i~~~l~  250 (251)
                                   ....+.+++....|..-.    ..|.-....+.||++.  +++++++.|.+.+.
T Consensus       123 -------------~~~~~~l~~~~~~~e~~~----~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~  172 (260)
T 3a4m_A          123 -------------KIPNEVIKKMYEKFDEPG----KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK  172 (260)
T ss_dssp             -------------SSCHHHHHHHHHHCCCTT----SSCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred             -------------CCCHHHHHHHHHHhcCcc----ccCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence                         112344444434332111    1111012456789876  89999999988764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.52  E-value=1e-13  Score=110.72  Aligned_cols=160  Identities=15%  Similarity=0.110  Sum_probs=91.6

Q ss_pred             ccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHH----cCCch--HHHHHHHHH-----------------cCCCcCH
Q 025529           42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA----AKTPL--GIKAKEAMD-----------------KGELVSD   98 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~----~~~~~--~~~i~~~l~-----------------~~~~~~~   98 (251)
                      |+|++||||||+++.|++.+|+++++.|.+.+....    .+.+.  ...+...+.                 .|..++.
T Consensus         7 i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~   86 (208)
T 3ake_A            7 IDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGEDLTS   86 (208)
T ss_dssp             EECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEECGG
T ss_pred             EECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCeeCch
Confidence            349999999999999999999999999998876532    12211  011111111                 1111110


Q ss_pred             ----H-------------HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025529           99 ----D-------------LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI  161 (251)
Q Consensus        99 ----~-------------~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl  161 (251)
                          .             .+.+.+...+....  .++|++|....  . .        ....++++|||++|++++.+|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~--~-~--------~~~~~d~~i~l~a~~e~~~~R~  153 (208)
T 3ake_A           87 FLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMG--T-A--------VFPEAAHKFYLTASPEVRAWRR  153 (208)
T ss_dssp             GSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCC--C-C--------CCTTCSEEEEEECCHHHHHHHH
T ss_pred             hhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEcccee--E-E--------EecCCcEEEEEECCHHHHHHHH
Confidence                0             01111222211222  57888886432  0 0        1124689999999999999999


Q ss_pred             hcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCC-ChhH
Q 025529          162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK-PPQE  240 (251)
Q Consensus       162 ~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~-~~ee  240 (251)
                      ..|.                                 ..+.+.+.+++..-......   ++......+.||++. ++++
T Consensus       154 ~~r~---------------------------------~~~~~~~~~~~~~R~~~~~~---~~~~~ad~~~Id~~~~~~ee  197 (208)
T 3ake_A          154 ARER---------------------------------PQAYEEVLRDLLRRDERDKA---QSAPAPDALVLDTGGMTLDE  197 (208)
T ss_dssp             HHTS---------------------------------SSCHHHHHHHHHHHHHTC-----CCCCCTTCEEEETTTSCHHH
T ss_pred             Hhhc---------------------------------ccCHHHHHHHHHHHHHHHhh---cccCCCCEEEEECCCCCHHH
Confidence            8763                                 12234455444421111110   001122346889985 9999


Q ss_pred             HHHHHHHHhc
Q 025529          241 VTSEVQKALS  250 (251)
Q Consensus       241 v~~~i~~~l~  250 (251)
                      +++.|.+.++
T Consensus       198 ~~~~I~~~~~  207 (208)
T 3ake_A          198 VVAWVLAHIR  207 (208)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998775

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.52  E-value=3.9e-14  Score=113.04  Aligned_cols=162  Identities=18%  Similarity=0.219  Sum_probs=94.1

Q ss_pred             ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHH-------
Q 025529           27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD-------   99 (251)
Q Consensus        27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~-------   99 (251)
                      |...++..++|+     |++||||||+++.|+..+|..+++.+++.....         . .....+....+.       
T Consensus        24 m~~~~g~~i~l~-----G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~---------~-~~~~~g~~~~~~~~~~~~~   88 (200)
T 4eun_A           24 MTGEPTRHVVVM-----GVSGSGKTTIAHGVADETGLEFAEADAFHSPEN---------I-ATMQRGIPLTDEDRWPWLR   88 (200)
T ss_dssp             ----CCCEEEEE-----CCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHH---------H-HHHHTTCCCCHHHHHHHHH
T ss_pred             hcCCCCcEEEEE-----CCCCCCHHHHHHHHHHhhCCeEEcccccccHHH---------H-HHHhcCCCCCCcccccHHH
Confidence            344567789999     999999999999999999999999887632110         0 001112111111       


Q ss_pred             HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCC
Q 025529          100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFA  179 (251)
Q Consensus       100 ~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~  179 (251)
                      .+...+...+.   ....+|+|...........+.    .. ..+..+|+|++|.+++.+|+..|..+.           
T Consensus        89 ~~~~~~~~~~~---~g~~viid~~~~~~~~~~~l~----~~-~~~~~vv~l~~~~e~l~~Rl~~R~~~~-----------  149 (200)
T 4eun_A           89 SLAEWMDARAD---AGVSTIITCSALKRTYRDVLR----EG-PPSVDFLHLDGPAEVIKGRMSKREGHF-----------  149 (200)
T ss_dssp             HHHHHHHHHHH---TTCCEEEEECCCCHHHHHHHT----TS-SSCCEEEEEECCHHHHHHHHTTCSCCS-----------
T ss_pred             HHHHHHHHHHh---cCCCEEEEchhhhHHHHHHHH----Hh-CCceEEEEEeCCHHHHHHHHHhcccCC-----------
Confidence            11122222221   234678876544443333322    21 224578999999999999998885211           


Q ss_pred             CCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          180 PPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       180 ~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                          ...+.++..+..+       ..+|.. ...+.||++.++++++++|.+.|.
T Consensus       150 --------------------~~~~~l~~~~~~~-------~~~~~~-~~~~~Id~~~~~~e~~~~I~~~l~  192 (200)
T 4eun_A          150 --------------------MPASLLQSQLATL-------EALEPD-ESGIVLDLRQPPEQLIERALTWLD  192 (200)
T ss_dssp             --------------------SCGGGHHHHHHHC-------CCCCTT-SCEEEEETTSCHHHHHHHHHHHHC
T ss_pred             --------------------CCHHHHHHHHHHh-------CCCCCC-CCeEEEECCCCHHHHHHHHHHHHH
Confidence                                1112222222221       111221 146789999999999999998875

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.51  E-value=8.1e-14  Score=115.03  Aligned_cols=171  Identities=16%  Similarity=0.204  Sum_probs=97.0

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHc
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~ll~~~l~  110 (251)
                      +..|+|+     |++||||||+++.|++.+|+++++++.+++....     +..+..++.. |.......-.+.+.....
T Consensus        48 g~~i~l~-----G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-----g~~i~~i~~~~ge~~fr~~e~~~l~~l~~  117 (250)
T 3nwj_A           48 GRSMYLV-----GMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-----GTSVAEIFEHFGESVFREKETEALKKLSL  117 (250)
T ss_dssp             TCCEEEE-----CSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-----TSCHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEE-----CCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-----CccHHHHHHHhCcHHHHHHHHHHHHHHHh
Confidence            6789999     9999999999999999999999999998876431     2223333322 222222222223333222


Q ss_pred             CCCCCCceEEeC--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529          111 KPSCQKGFILDG--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD  188 (251)
Q Consensus       111 ~~~~~~~~Iidg--~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~  188 (251)
                      ..  ...+|.+|  .+.....+..+.         .+.+|||++|.+++.+|+..+...                     
T Consensus       118 ~~--~~~Via~GgG~v~~~~~~~~l~---------~~~vV~L~a~~e~l~~Rl~~~~~~---------------------  165 (250)
T 3nwj_A          118 MY--HQVVVSTGGGAVIRPINWKYMH---------KGISIWLDVPLEALAHRIAAVGTG---------------------  165 (250)
T ss_dssp             HC--SSEEEECCGGGGGSHHHHHHHT---------TSEEEEEECCHHHHHHHHHC-------------------------
T ss_pred             hc--CCcEEecCCCeecCHHHHHHHh---------CCcEEEEECCHHHHHHHHhhcCCC---------------------
Confidence            11  22344444  333333333221         268999999999999999863210                     


Q ss_pred             CCCCCccc---CCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEE----------cC-CCChhHHHHHHHHHhc
Q 025529          189 VTGEPLIQ---RKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQL----------HA-EKPPQEVTSEVQKALS  250 (251)
Q Consensus       189 ~~~~~~~~---r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~i----------d~-~~~~eev~~~i~~~l~  250 (251)
                         .+...   ++++..+....++........+   .|.....++.+          |+ +.+++++++.|.+.|.
T Consensus       166 ---~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~---lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~  235 (250)
T 3nwj_A          166 ---SRPLLHDDESGDTYTAALNRLSTIWDARGE---AYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQ  235 (250)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHH---HHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHH
T ss_pred             ---CCCcccCCCcccchhhHHHHHHHHHHHHHH---HHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHH
Confidence               00000   1122223334455554444444   45444455533          55 4899999999988764

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.51  E-value=2.1e-12  Score=100.56  Aligned_cols=159  Identities=14%  Similarity=0.151  Sum_probs=91.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCH-------HHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD-------DLVV  102 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~  102 (251)
                      .++..++++     |++||||||+++.|+..+|..+++.+++....         .+... ..|..+.+       ..+.
T Consensus         6 ~~g~~i~l~-----G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~~-~~g~~~~~~~~~~~~~~~~   70 (175)
T 1knq_A            6 HDHHIYVLM-----GVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEKM-ASGEPLNDDDRKPWLQALN   70 (175)
T ss_dssp             TTSEEEEEE-----CSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHHH-HTTCCCCHHHHHHHHHHHH
T ss_pred             CCCcEEEEE-----cCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHHh-hcCcCCCccccccHHHHHH
Confidence            456778888     99999999999999999999999998763210         00000 01111111       1111


Q ss_pred             HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcC-EEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCC
Q 025529          103 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVD-KVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPP  181 (251)
Q Consensus       103 ~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~-~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p  181 (251)
                      ..+...+.   ....+|+|...........    +...  .++ .+|+|++|++++.+|+..|..+              
T Consensus        71 ~~~~~~~~---~~~~~vi~~~~~~~~~~~~----l~~~--~~~~~vv~l~~~~e~~~~R~~~R~~~--------------  127 (175)
T 1knq_A           71 DAAFAMQR---TNKVSLIVCSALKKHYRDL----LREG--NPNLSFIYLKGDFDVIESRLKARKGH--------------  127 (175)
T ss_dssp             HHHHHHHH---HCSEEEEECCCCSHHHHHH----HHTT--CTTEEEEEEECCHHHHHHHHHTSTTC--------------
T ss_pred             HHHHHHHh---cCCcEEEEeCchHHHHHHH----HHhc--CCCEEEEEEECCHHHHHHHHHhccCC--------------
Confidence            22222221   1346788743222322222    2222  234 7999999999999999987411              


Q ss_pred             CCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          182 KVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       182 ~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                       ......++..+..+.    +.  +|.. ...+.||++.+++++.++|.+.+.
T Consensus       128 -----------------~~~~~~~~~~~~~~~----~~--~~~~-~~~~~Id~~~~~~~~~~~i~~~l~  172 (175)
T 1knq_A          128 -----------------FFKTQMLVTQFETLQ----EP--GADE-TDVLVVDIDQPLEGVVASTIEVIK  172 (175)
T ss_dssp             -----------------CCCHHHHHHHHHHCC----CC--CTTC-TTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             -----------------CCchHHHHHHHHhhh----Cc--ccCC-CCeEEEeCCCCHHHHHHHHHHHHh
Confidence                             011223333322211    10  1221 235788999999999999998875

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.50  E-value=1.7e-13  Score=111.10  Aligned_cols=115  Identities=17%  Similarity=0.155  Sum_probs=71.2

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHH----cCCchH--HHHHHHHH--------------
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA----AKTPLG--IKAKEAMD--------------   91 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~----~~~~~~--~~i~~~l~--------------   91 (251)
                      ++.|.|.     |++||||||+++.|++.+|+++++.|++.+....    .+.++.  ....+...              
T Consensus         5 ~~~i~i~-----G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (227)
T 1cke_A            5 APVITID-----GPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLE   79 (227)
T ss_dssp             SCEEEEE-----CCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEE
T ss_pred             CeEEEEE-----CCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCce
Confidence            4567778     9999999999999999999999999999886542    333221  12222211              


Q ss_pred             ---cCCCcCHH-----------------HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEe
Q 025529           92 ---KGELVSDD-----------------LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA  151 (251)
Q Consensus        92 ---~~~~~~~~-----------------~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~  151 (251)
                         .+..+++.                 .+...+...........++|+||+....  .         .-..++++|||+
T Consensus        80 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~--~---------~~~~~d~~i~l~  148 (227)
T 1cke_A           80 VILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT--V---------VFPDAPVKIFLD  148 (227)
T ss_dssp             EEETTEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC--C---------CCTTCSEEEEEE
T ss_pred             EEECCeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc--e---------EecCCCEEEEEe
Confidence               11111111                 1122222222222345689999873211  0         013578999999


Q ss_pred             cCHHHHHHHHh
Q 025529          152 IDDAVLEERIT  162 (251)
Q Consensus       152 ~~~e~~~~Rl~  162 (251)
                      +|.+++.+|..
T Consensus       149 ~~~e~~~~R~~  159 (227)
T 1cke_A          149 ASSEERAHRRM  159 (227)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999999954

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.49  E-value=2.7e-13  Score=105.24  Aligned_cols=163  Identities=17%  Similarity=0.284  Sum_probs=83.6

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK  111 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~  111 (251)
                      ++.|+|+     |++||||||+++.|+..++.++++.|.+++...  +...+.....   .|.......-..++.. +..
T Consensus         4 ~~~i~l~-----G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~---~g~~~~~~~~~~~l~~-l~~   72 (173)
T 1kag_A            4 KRNIFLV-----GPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDL---EGEEGFRDREEKVINE-LTE   72 (173)
T ss_dssp             CCCEEEE-----CCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHH---HHHHHHHHHHHHHHHH-HHT
T ss_pred             CCeEEEE-----CCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHH---HhHHHHHHHHHHHHHH-HHh
Confidence            3467777     999999999999999999999999998876532  1222211110   0000000001122222 211


Q ss_pred             CCCCCceEEe---CCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529          112 PSCQKGFILD---GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD  188 (251)
Q Consensus       112 ~~~~~~~Iid---g~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~  188 (251)
                         ...+++.   +.+........+.        .++.+++|+++++++.+|+..|..++                    
T Consensus        73 ---~~~~v~~~~~~~~~~~~~~~~l~--------~~~~~i~l~~~~~~l~~R~~~r~~r~--------------------  121 (173)
T 1kag_A           73 ---KQGIVLATGGGSVKSRETRNRLS--------ARGVVVYLETTIEKQLARTQRDKKRP--------------------  121 (173)
T ss_dssp             ---SSSEEEECCTTGGGSHHHHHHHH--------HHSEEEECCCCHHHHHSCC------C--------------------
T ss_pred             ---CCCeEEECCCeEEecHHHHHHHH--------hCCEEEEEeCCHHHHHHHHhCCCCCC--------------------
Confidence               2345553   2222222222222        13679999999999999998763110                    


Q ss_pred             CCCCCcccCCCCc-HHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529          189 VTGEPLIQRKDDT-AAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS  250 (251)
Q Consensus       189 ~~~~~~~~r~~~~-~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~  250 (251)
                           +. ...+. .+.++..+..    ..+   +|.... .+.||++ .+++++++.|.+.++
T Consensus       122 -----~~-~~~~~~~~~~~~~~~~----r~~---~~~~~a-~~~id~~~~~~~~~~~~i~~~l~  171 (173)
T 1kag_A          122 -----LL-HVETPPREVLEALANE----RNP---LYEEIA-DVTIRTDDQSAKVVANQIIHMLE  171 (173)
T ss_dssp             -----CS-SSSCCCHHHHHHHHHH----HHH---HHHHHC-SEEC-----CHHHHHHHHHHHHC
T ss_pred             -----CC-CCCCchHHHHHHHHHH----HHH---HHHhhC-CEEEECCCCCHHHHHHHHHHHHH
Confidence                 00 11222 3334333221    122   222212 3568887 799999999998875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.48  E-value=5.6e-13  Score=106.04  Aligned_cols=163  Identities=13%  Similarity=0.063  Sum_probs=93.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc---CCCcCHHHHH----
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK---GELVSDDLVV----  102 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~---~~~~~~~~~~----  102 (251)
                      .+++.|+|.     |++||||||+++.|++. |+++++.|++.+... ++.+  ..+.+.+..   ...+....+.    
T Consensus         6 ~~~~~I~i~-----G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~   76 (203)
T 1uf9_A            6 KHPIIIGIT-----GNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVF   76 (203)
T ss_dssp             CCCEEEEEE-----ECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHT
T ss_pred             cCceEEEEE-----CCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHh
Confidence            356677777     99999999999999998 999999999887655 2222  222222200   1122222111    


Q ss_pred             --------------HHH-HHHHcCC-CC-CCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          103 --------------GII-DEAMKKP-SC-QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       103 --------------~ll-~~~l~~~-~~-~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                                    ..+ ...+... .. ...+|+|+ |.....  .+       ...++.+|+|++|++++.+|+..|.
T Consensus        77 ~~~~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~~--~~-------~~~~d~~i~l~~~~e~~~~R~~~R~  146 (203)
T 1uf9_A           77 SDPERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFEK--GW-------EGRLHGTLLVAAPLEERVRRVMARS  146 (203)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTTT--TC-------GGGSSEEEEECCCHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceecc--Cc-------hhhCCEEEEEECCHHHHHHHHHHcC
Confidence                          111 0111111 12 34567775 322111  00       0236899999999999999998762


Q ss_pred             CCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHH
Q 025529          166 IHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV  245 (251)
Q Consensus       166 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i  245 (251)
                                                       ..+.+.+..++...   .. ...++...+  +.||++.+++++++.|
T Consensus       147 ---------------------------------~~~~~~~~~~i~~~---~~-~~~~~~~ad--~vId~~~~~~~~~~~i  187 (203)
T 1uf9_A          147 ---------------------------------GLSREEVLARERAQ---MP-EEEKRKRAT--WVLENTGSLEDLERAL  187 (203)
T ss_dssp             ---------------------------------CCTTHHHHHHHTTS---CC-HHHHHHHCS--EEECCSSHHHHHHHHH
T ss_pred             ---------------------------------CCCHHHHHHHHHHC---CC-hhHHHHhCC--EEEECCCCHHHHHHHH
Confidence                                             11123444444331   11 122222222  3688888999999999


Q ss_pred             HHHhc
Q 025529          246 QKALS  250 (251)
Q Consensus       246 ~~~l~  250 (251)
                      .+.+.
T Consensus       188 ~~~~~  192 (203)
T 1uf9_A          188 KAVLA  192 (203)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88774

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.47  E-value=3.4e-13  Score=107.83  Aligned_cols=168  Identities=11%  Similarity=0.066  Sum_probs=89.6

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchH-HHHHHHHHcCC-Cc------------CH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLG-IKAKEAMDKGE-LV------------SD   98 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~-~~i~~~l~~~~-~~------------~~   98 (251)
                      +.|.|.     |++||||||+++.||+++|+++++ +++++..... .... ..+...-+... ..            ..
T Consensus         7 ~iI~i~-----g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~-~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~   79 (201)
T 3fdi_A            7 IIIAIG-----REFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKD-GRYSKEVLERFDEKPMNFAFIPVPAGGTTISLE   79 (201)
T ss_dssp             CEEEEE-----ECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------
T ss_pred             eEEEEe-----CCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHh-cCCCHHHHHHHhhhchhHHHHHhcccccccccc
Confidence            456666     999999999999999999999999 7777652211 1110 00111000000 00            00


Q ss_pred             HHHHHHHHHHHcCCC--CCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecc
Q 025529           99 DLVVGIIDEAMKKPS--CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHT  176 (251)
Q Consensus        99 ~~~~~ll~~~l~~~~--~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~  176 (251)
                      ..+.....+.+....  ...++|++|..-..        ++..  ..-.+.|||++|.+++.+|+..+.           
T Consensus        80 ~~~~~~~~~~i~~la~~~~~~~Vi~Gr~g~~--------vl~~--~~~~~~V~L~A~~e~r~~R~~~~~-----------  138 (201)
T 3fdi_A           80 QDIAIRQFNFIRKKANEEKESFVIVGRCAEE--------ILSD--NPNMISAFILGDKDTKTKRVMERE-----------  138 (201)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCCEEEESTTHHH--------HTTT--CTTEEEEEEEECHHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHHHHHhhcCCCEEEEECCcch--------hcCC--CCCeEEEEEECCHHHHHHHHHHHh-----------
Confidence            001112222222222  23468888752111        1111  112489999999999999998652           


Q ss_pred             cCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhh------CCcEEEEcCC-CChhHHHHHHHHHh
Q 025529          177 KFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK------KGIVAQLHAE-KPPQEVTSEVQKAL  249 (251)
Q Consensus       177 ~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~------~~~~~~id~~-~~~eev~~~i~~~l  249 (251)
                                            +.+.+...+++........+.+..|..      ...-+.||++ .+++++++.|.+.+
T Consensus       139 ----------------------~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i  196 (201)
T 3fdi_A          139 ----------------------GVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYI  196 (201)
T ss_dssp             ----------------------TCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHH
T ss_pred             ----------------------CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHH
Confidence                                  112344444444433333433333310      0112567775 69999999999887


Q ss_pred             c
Q 025529          250 S  250 (251)
Q Consensus       250 ~  250 (251)
                      +
T Consensus       197 ~  197 (201)
T 3fdi_A          197 D  197 (201)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.46  E-value=4.3e-14  Score=116.92  Aligned_cols=174  Identities=16%  Similarity=0.100  Sum_probs=95.5

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc----------eechhHHHHHHHHcCCchHHHHHHHHHc-----C
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC----------HLATGDMLRAAVAAKTPLGIKAKEAMDK-----G   93 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~----------~i~~~~li~~~~~~~~~~~~~i~~~l~~-----~   93 (251)
                      +.+++.|.|.     |++||||||+|+.|++.+|++          ++++|++.+..    . .+...+.....     .
T Consensus        19 ~~~~~iI~I~-----G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~----~-~~~~~~~~~g~~~f~~~   88 (252)
T 1uj2_A           19 GGEPFLIGVS-----GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL----T-SEQKAKALKGQFNFDHP   88 (252)
T ss_dssp             --CCEEEEEE-----CSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC----C-HHHHHHHHTTCSCTTSG
T ss_pred             CCCcEEEEEE-----CCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc----C-hhhhhhhccCCCCCCCc
Confidence            4456677777     999999999999999999987          78999876421    0 01101111110     0


Q ss_pred             CCcCHHHHHHHHHHHHcC---------------------CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEec
Q 025529           94 ELVSDDLVVGIIDEAMKK---------------------PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI  152 (251)
Q Consensus        94 ~~~~~~~~~~ll~~~l~~---------------------~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~  152 (251)
                      .......+...+......                     ......+|+||.+....  ..+..       .++.+|||++
T Consensus        89 ~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~--~~~~~-------~~d~vi~l~~  159 (252)
T 1uj2_A           89 DAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS--QEVRD-------LFQMKLFVDT  159 (252)
T ss_dssp             GGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS--HHHHH-------HCSEEEEEEC
T ss_pred             chhhHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccC--HHHHH-------hcCeeEEEeC
Confidence            111122233344333211                     01234688999654211  11111       2578999999


Q ss_pred             CHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHh-ccHHHH-HHHhhCCcEE
Q 025529          153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHK-QTEPVI-DYYSKKGIVA  230 (251)
Q Consensus       153 ~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~-~~~~~~-~~~~~~~~~~  230 (251)
                      |++++++|+..|...                            .+ +.+.+.+.+++..... ...... .+....+.++
T Consensus       160 ~~e~~~~R~~~R~~~----------------------------~r-g~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI  210 (252)
T 1uj2_A          160 DADTRLSRRVLRDIS----------------------------ER-GRDLEQILSQYITFVKPAFEEFCLPTKKYADVII  210 (252)
T ss_dssp             CHHHHHHHHHHHHHH----------------------------HS-CCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEE
T ss_pred             CHHHHHHHHHHHHHh----------------------------hh-CCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEE
Confidence            999999999876310                            01 2244555555433111 011000 1111122333


Q ss_pred             --EEcCCCChhHHHHHHHHHhc
Q 025529          231 --QLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       231 --~id~~~~~eev~~~i~~~l~  250 (251)
                        .||++.+++++++.|.+.+.
T Consensus       211 ~~~id~~~s~e~v~~~I~~~l~  232 (252)
T 1uj2_A          211 PRGADNLVAINLIVQHIQDILN  232 (252)
T ss_dssp             ETGGGCHHHHHHHHHHHHHHHH
T ss_pred             ecCCCChhHHHHHHHHHHHHHc
Confidence              34888899999999988775

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.44  E-value=1.2e-12  Score=102.43  Aligned_cols=109  Identities=24%  Similarity=0.289  Sum_probs=68.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~  110 (251)
                      +++.|++.     |+|||||||+++.|++.+++.+++++++++.. ......+...     .........+...+...+.
T Consensus        10 ~~~~i~i~-----G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~   78 (180)
T 3iij_A           10 LLPNILLT-----GTPGVGKTTLGKELASKSGLKYINVGDLAREE-QLYDGYDEEY-----DCPILDEDRVVDELDNQMR   78 (180)
T ss_dssp             CCCCEEEE-----CSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH-TCEEEEETTT-----TEEEECHHHHHHHHHHHHH
T ss_pred             cCCeEEEE-----eCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc-chhhhhhhhh-----cCccCChHHHHHHHHHHHh
Confidence            45678888     99999999999999999999999999987764 1000000000     0001112223333333332


Q ss_pred             CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          111 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       111 ~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      .    .++|+|.........           ..++.+|||++|.+++.+|+..|.
T Consensus        79 ~----g~~vv~~~~~~~~~~-----------~~~~~vi~L~~~~e~l~~R~~~r~  118 (180)
T 3iij_A           79 E----GGVIVDYHGCDFFPE-----------RWFHIVFVLRTDTNVLYERLETRG  118 (180)
T ss_dssp             H----CCEEEECSCCTTSCG-----------GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             c----CCEEEEechhhhcch-----------hcCCEEEEEECCHHHHHHHHHHcC
Confidence            2    367777543221100           126799999999999999999874

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.43  E-value=1.2e-12  Score=106.19  Aligned_cols=172  Identities=15%  Similarity=0.087  Sum_probs=91.7

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-------------------
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-------------------   92 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-------------------   92 (251)
                      .+.|.|.     |++||||||+++.|++++|+++++ .++++.......---..+.+..+.                   
T Consensus        14 ~~iI~i~-----g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~   87 (223)
T 3hdt_A           14 NLIITIE-----REYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHS   87 (223)
T ss_dssp             CEEEEEE-----ECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC--------------------------------
T ss_pred             CeEEEEe-----CCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccc
Confidence            3456666     999999999999999999999999 566666444221000011110000                   


Q ss_pred             ------CCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025529           93 ------GELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI  166 (251)
Q Consensus        93 ------~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~  166 (251)
                            .... ++.+.....+.+.......++|+.|..-...    +. .+..  ..-.+.|||++|.+++.+|+..+. 
T Consensus        88 ~~~~~~~~~~-~~~~f~~~~~~i~~la~~~~~Vi~Grggg~v----l~-~~~~--~~~~~~VfL~A~~e~r~~Ri~~~~-  158 (223)
T 3hdt_A           88 KPSPNDKLTS-PENLFKFQSEVMRELAESEPCIFVGRAAGYV----LD-QDED--IERLIRIFVYTDKVKKVQRVMEVD-  158 (223)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHSCEEEESTTHHHH----HH-HCTT--CCEEEEEEEECCHHHHHHHHHHHH-
T ss_pred             cccccccccc-HHHHHHHHHHHHHHHHhCCCEEEEeCCcchh----cc-cccC--CCCeEEEEEECCHHHHHHHHHHhc-
Confidence                  0001 1111111112222222224577776532111    10 0011  122589999999999999998653 


Q ss_pred             CCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhh------CCcEEEEcCC-CChh
Q 025529          167 HPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK------KGIVAQLHAE-KPPQ  239 (251)
Q Consensus       167 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~------~~~~~~id~~-~~~e  239 (251)
                                                      +.+.+...+++........+.+.+|-.      ...=+.||++ .+++
T Consensus       159 --------------------------------~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~e  206 (223)
T 3hdt_A          159 --------------------------------CIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLE  206 (223)
T ss_dssp             --------------------------------TCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHH
T ss_pred             --------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHH
Confidence                                            112244555555444444444443310      1112467775 7999


Q ss_pred             HHHHHHHHHhc
Q 025529          240 EVTSEVQKALS  250 (251)
Q Consensus       240 ev~~~i~~~l~  250 (251)
                      ++++.|.+.++
T Consensus       207 evv~~I~~~i~  217 (223)
T 3hdt_A          207 ETAELIKAYIR  217 (223)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998774

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.42  E-value=8.7e-14  Score=111.46  Aligned_cols=168  Identities=13%  Similarity=0.107  Sum_probs=94.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh-CCceechhHHHHHHHHcCCchHHHHHHHHHc-C--CCcCHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-G--ELVSDDLVVGII  105 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~--~~~~~~~~~~ll  105 (251)
                      .++..+.+.     |++||||||+++.|++.+ ++.+++.|+++..... . ..+.   ..+.. .  ..+....+...+
T Consensus        19 ~~~~~i~i~-----G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~-~-~~~~---~~~~~~~~~~~~~~~~l~~~i   88 (207)
T 2qt1_A           19 SKTFIIGIS-----GVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESE-I-ETDK---NGFLQYDVLEALNMEKMMSAI   88 (207)
T ss_dssp             CCCEEEEEE-----ESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGG-S-CBCT---TSCBCCSSGGGBCHHHHHHHH
T ss_pred             CCCeEEEEE-----CCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhH-h-hccc---cCCChhHHHHHhHHHHHHHHH
Confidence            455667777     999999999999999998 8999999876542100 0 0000   00000 0  001111222222


Q ss_pred             HHHHcC------------CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCce
Q 025529          106 DEAMKK------------PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRT  173 (251)
Q Consensus       106 ~~~l~~------------~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~  173 (251)
                      ...+..            ......+|+||.+...  ...+       ...++.+|+++++++++.+|+..|...      
T Consensus        89 ~~~l~~~~~~~~~~~~~~~~~~~~vi~eg~~~~~--~~~~-------~~~~d~~i~l~~~~~~~~~R~~~R~~~------  153 (207)
T 2qt1_A           89 SCWMESARHSVVSTDQESAEEIPILIIEGFLLFN--YKPL-------DTIWNRSYFLTIPYEECKRRRSTRVYQ------  153 (207)
T ss_dssp             HHHHHHHTTSSCCC-----CCCCEEEEECTTCTT--CGGG-------TTTCSEEEEEECCHHHHHHHHHHSCCS------
T ss_pred             HHHHhCCCCCCcCCCeeecCCCCEEEEeehHHcC--cHHH-------HHhcCeeEEEECCHHHHHHHHHHcCCC------
Confidence            211110            1123468899965332  1111       145789999999999999999766310      


Q ss_pred             ecccCCCCCCCCCCCCCCCCcccCCCCcHHHHH-HHHHHHHhccHHHHHHHhh-CCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          174 YHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLK-SRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       174 ~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~-~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                              .+.....+. +....|    ....+.+.. .+.++.||++.+++++.++|.+.++
T Consensus       154 ------------------------~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~  204 (207)
T 2qt1_A          154 ------------------------PPDSPGYFDGHVWPMY----LKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLI  204 (207)
T ss_dssp             ------------------------SCCCTTHHHHTHHHHH----HHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHT
T ss_pred             ------------------------ccchHHHHHHHHhHHH----HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHH
Confidence                                    011011122 111222    223334443 3567889999999999999998875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.38  E-value=1.9e-12  Score=102.64  Aligned_cols=42  Identities=19%  Similarity=0.283  Sum_probs=36.3

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHc
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA   78 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~   78 (251)
                      .+.|.+.     |++||||||+++.|++.+|++++++|++.++...+
T Consensus        12 ~~iIglt-----G~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~   53 (192)
T 2grj_A           12 HMVIGVT-----GKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE   53 (192)
T ss_dssp             EEEEEEE-----CSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred             ceEEEEE-----CCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence            3445555     99999999999999999999999999998887664

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.37  E-value=2.2e-12  Score=105.50  Aligned_cols=42  Identities=36%  Similarity=0.531  Sum_probs=37.3

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA   75 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~   75 (251)
                      +.+++.|.|.     |++||||||+++.|++.+|+++++.|++.+..
T Consensus        13 ~~~~~~i~i~-----G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~   54 (236)
T 1q3t_A           13 KMKTIQIAID-----GPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA   54 (236)
T ss_dssp             -CCCCEEEEE-----CSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             ccCCcEEEEE-----CCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence            4567788888     99999999999999999999999999998764

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.36  E-value=5.4e-12  Score=99.22  Aligned_cols=114  Identities=16%  Similarity=0.073  Sum_probs=64.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGI  104 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l  104 (251)
                      .+++.|+++     |++||||||+++.|++.++     +.+++.+.+ +..+.....+...-+          ...+..+
T Consensus        11 ~~~~~i~l~-----G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~r----------~~~~~~~   74 (186)
T 2yvu_A           11 EKGIVVWLT-----GLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA-RTTVSEGAGFTREER----------LRHLKRI   74 (186)
T ss_dssp             SCCEEEEEE-----CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HTTTTTTCCCCHHHH----------HHHHHHH
T ss_pred             CCCcEEEEE-----cCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH-HHHHhhccCCChhhH----------HHHHHHH
Confidence            457788888     9999999999999999884     345665544 332211100000000          0011111


Q ss_pred             --HHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529          105 --IDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT  162 (251)
Q Consensus       105 --l~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~  162 (251)
                        +...+.  ..+..+|+|++.........+..++...+ .++.+|||++|++++.+|+.
T Consensus        75 ~~~~~~~~--~~g~~vi~d~~~~~~~~r~~~~~~~~~~~-~~~~~v~L~~~~e~~~~R~~  131 (186)
T 2yvu_A           75 AWIARLLA--RNGVIVICSFVSPYKQARNMVRRIVEEEG-IPFLEIYVKASLEEVIRRDP  131 (186)
T ss_dssp             HHHHHHHH--TTTCEEEEECCCCCHHHHHHHHHHHHHTT-CCEEEEEEECCHHHHHHHCH
T ss_pred             HHHHHHHH--hCCCEEEEeCccccHHHHHHHHHHhhccC-CCeEEEEEeCCHHHHHHhhh
Confidence              111111  12233556776544444444444444433 57899999999999999974

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.36  E-value=7.3e-13  Score=110.10  Aligned_cols=83  Identities=11%  Similarity=0.075  Sum_probs=51.2

Q ss_pred             CCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhc--cHHH
Q 025529          142 KKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQ--TEPV  219 (251)
Q Consensus       142 ~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~--~~~~  219 (251)
                      ..||++|+|++|++++.+|+..|..      .++.                   ....+..+.+..++..|...  ..+.
T Consensus       173 ~~pd~vi~L~~~~e~~~~Ri~~R~r------~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~v~~~  227 (263)
T 1p5z_B          173 LELDGIIYLQATPETCLHRIYLRGR------NEEQ-------------------GIPLEYLEKLHYKHESWLLHRTLKTN  227 (263)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHHCC------GGGT-------------------TCCHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred             CCCCeEEEEECCHHHHHHHHHhcCC------cccc-------------------CccHHHHHHHHHHHHHHHhhccchhh
Confidence            4689999999999999999987631      1110                   01112233344444444321  1111


Q ss_pred             HHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          220 IDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       220 ~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                      ...+.. +.++.||++.+++++++.|.+.|.
T Consensus       228 y~~~~~-~~~~~Id~~~~~eev~~~I~~~l~  257 (263)
T 1p5z_B          228 FDYLQE-VPILTLDVNEDFKDKYESLVEKVK  257 (263)
T ss_dssp             CGGGGG-SCEEEEECCSCHHHHHHHHHHHHH
T ss_pred             hhhhcc-CCEEEEECCCCHHHHHHHHHHHHH
Confidence            122222 358899999999999999998774

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.35  E-value=2e-11  Score=100.83  Aligned_cols=41  Identities=24%  Similarity=0.399  Sum_probs=36.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA   75 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~   75 (251)
                      .+++.|.|.     ||+||||||+++.|++++|+.+++.+.+.+..
T Consensus        25 ~~g~~I~I~-----G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~   65 (252)
T 4e22_A           25 AIAPVITVD-----GPSGAGKGTLCKALAESLNWRLLDSGAIYRVL   65 (252)
T ss_dssp             TTSCEEEEE-----CCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred             CCCcEEEEE-----CCCCCCHHHHHHHHHHhcCCCcCCCCceehHh
Confidence            356678888     99999999999999999999999999988654

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.35  E-value=2.8e-12  Score=103.41  Aligned_cols=39  Identities=31%  Similarity=0.445  Sum_probs=35.0

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA   75 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~   75 (251)
                      ++.|+|.     |++||||||+++.|++.+|+++++.|.+++..
T Consensus         3 ~~~i~i~-----G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~   41 (219)
T 2h92_A            3 AINIALD-----GPAAAGKSTIAKRVASELSMIYVDTGAMYRAL   41 (219)
T ss_dssp             CCCEEEE-----CCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred             ceEEEEE-----CCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence            4567777     99999999999999999999999999998764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.34  E-value=5.9e-11  Score=94.76  Aligned_cols=168  Identities=14%  Similarity=0.113  Sum_probs=87.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC-ceechhHHHHHHHH---cCCc----hHHHHHHHHHcCCCcCHH--
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL-CHLATGDMLRAAVA---AKTP----LGIKAKEAMDKGELVSDD--   99 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~-~~i~~~~li~~~~~---~~~~----~~~~i~~~l~~~~~~~~~--   99 (251)
                      .+++.|+|+     ||+||||||+++.|++.++- ..++..+..|+...   .+..    -...+...+.++..+...  
T Consensus        10 ~~~~~i~l~-----G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (204)
T 2qor_A           10 ARIPPLVVC-----GPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKY   84 (204)
T ss_dssp             CCCCCEEEE-----CCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEE
T ss_pred             ccCCEEEEE-----CCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHh
Confidence            367788999     99999999999999998842 11111110000000   0000    001111222222211100  


Q ss_pred             ------HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCC-cCEEEEEe-cCHHHHHHHHhcCcCCCCCC
Q 025529          100 ------LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKK-VDKVLNFA-IDDAVLEERITGRWIHPSSG  171 (251)
Q Consensus       100 ------~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~-~~~vI~L~-~~~e~~~~Rl~~r~~~~~~~  171 (251)
                            .....+...+.   .++.+|+|+.+...   ..+..    .... ...+|||+ +|.+++.+|+..|.      
T Consensus        85 ~~~~~~~~~~~i~~~l~---~g~~vi~d~~~~~~---~~l~~----~~~~~~~~~i~l~~~s~e~l~~Rl~~R~------  148 (204)
T 2qor_A           85 ANNFYGTLKSEYDLAVG---EGKICLFEMNINGV---KQLKE----SKHIQDGIYIFVKPPSIDILLGRLKNRN------  148 (204)
T ss_dssp             TTEEEEEEHHHHHHHHH---TTCEEEEECCHHHH---HHHHH----CSSCSCCEEEEEECSCHHHHHHHHHTCT------
T ss_pred             CCCeecCCHHHHHHHHH---cCCeEEEEECHHHH---HHHHH----hcCCCCeEEEEEcCCCHHHHHHHHHHcC------
Confidence                  00012222222   24578898754332   22221    1110 13789998 99999999998773      


Q ss_pred             ceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          172 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       172 ~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                                 .++.+.+++|+..++....+.   +...-.++.+| + ++++++++|.+.|.
T Consensus       149 ---------------------------~~~~~~i~~rl~~~~~~~~~~---~~~~~d~vi~n-~-~~e~~~~~i~~~i~  195 (204)
T 2qor_A          149 ---------------------------TEKPEEINKRMQELTREMDEA---DKVGFNYFIVN-D-DLARTYAELREYLL  195 (204)
T ss_dssp             ---------------------------TSCHHHHHHHHHHHHHHHHHH---HHHTCSEEEEC-S-SHHHHHHHHHHHHH
T ss_pred             ---------------------------CCCHHHHHHHHHHHHHHHHHh---hhccCcEEEEC-c-CHHHHHHHHHHHHH
Confidence                                       235577888887765433221   22222344344 4 89999999988874

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.34  E-value=2.2e-12  Score=103.67  Aligned_cols=115  Identities=13%  Similarity=0.112  Sum_probs=64.2

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC------CceechhHHHHHHHHcCCchHHHHH-HHHHcCCCcCHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC------LCHLATGDMLRAAVAAKTPLGIKAK-EAMDKGELVSDDLV  101 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~------~~~i~~~~li~~~~~~~~~~~~~i~-~~l~~~~~~~~~~~  101 (251)
                      ..+++.|+++     |++||||||+++.|++.++      +.+++.+.+ +..+.....+....+ ..+        ..+
T Consensus        22 ~~~~~~i~~~-----G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~-r~~l~~~~~~~~~~r~~~~--------~~~   87 (211)
T 1m7g_A           22 NQRGLTIWLT-----GLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI-RFGLNKDLGFSEADRNENI--------RRI   87 (211)
T ss_dssp             TSSCEEEEEE-----CSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH-TTTTTTTCCSSHHHHHHHH--------HHH
T ss_pred             CCCCCEEEEE-----CCCCCCHHHHHHHHHHHhccccCCcEEEECChHH-hhhhccccCCCHHHHHHHH--------HHH
Confidence            3467889999     9999999999999999886      677775543 322211101100000 000        001


Q ss_pred             HHHHHHHHcCCCCCCceEEeCCCCC-HHHHHHHHHHHHh-----cCCCcCEEEEEecCHHHHHHHH
Q 025529          102 VGIIDEAMKKPSCQKGFILDGFPRT-EVQAQKLDEMLEK-----QGKKVDKVLNFAIDDAVLEERI  161 (251)
Q Consensus       102 ~~ll~~~l~~~~~~~~~Iidg~~~~-~~~~~~l~~~~~~-----~~~~~~~vI~L~~~~e~~~~Rl  161 (251)
                      ...+...+.   .+..+|+| ++.. ......+..+...     ....|+.+|||++|++++.+|+
T Consensus        88 ~~~~~~~l~---~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~  149 (211)
T 1m7g_A           88 AEVAKLFAD---SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD  149 (211)
T ss_dssp             HHHHHHHHH---TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred             HHHHHHHHH---CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence            111222222   23457778 5432 1223334333321     1125789999999999999995

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.31  E-value=4.3e-10  Score=94.63  Aligned_cols=143  Identities=17%  Similarity=0.204  Sum_probs=84.2

Q ss_pred             cCCCCchhHHHHHHHHhhcc---CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh--CCceechhHHHHHHHHcCCchH
Q 025529            9 LEDVPSVDLMTELLRRMKCA---SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLG   83 (251)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~---~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~--~~~~i~~~~li~~~~~~~~~~~   83 (251)
                      +.+.+...+.++....+...   ..+|..|++.     |||||||||+++.|++++  ++.+|+.|.+ +.....    .
T Consensus         7 ~s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~-----G~sGsGKSTla~~L~~~~~~~~~~Is~D~~-R~~~~~----~   76 (287)
T 1gvn_B            7 FTDKQFENRLNDNLEELIQGKKAVESPTAFLLG-----GQPGSGKTSLRSAIFEETQGNVIVIDNDTF-KQQHPN----F   76 (287)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEE-----CCTTSCTHHHHHHHHHHTTTCCEEECTHHH-HTTSTT----H
T ss_pred             CCHHHHHHHHHHHHHHHhccccCCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhCCCeEEEechHh-HHhchh----h
Confidence            33344555556666666432   2356778888     999999999999999999  7888888654 221100    0


Q ss_pred             HHHHHHHHcCC-----CcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHH-
Q 025529           84 IKAKEAMDKGE-----LVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL-  157 (251)
Q Consensus        84 ~~i~~~l~~~~-----~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~-  157 (251)
                      ..+.+.+....     ..........+...+.   .+..+|+|+......+...+...+...+.. ..++++.+|++.+ 
T Consensus        77 ~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~---~g~~vIld~~~~~~~~~~~~~~~~~~~g~~-~~~i~~~~p~~~~~  152 (287)
T 1gvn_B           77 DELVKLYEKDVVKHVTPYSNRMTEAIISRLSD---QGYNLVIEGTGRTTDVPIQTATMLQAKGYE-TKMYVMAVPKINSY  152 (287)
T ss_dssp             HHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH---HTCCEEECCCCCCSHHHHHHHHHHHTTTCE-EEEEEECCCHHHHH
T ss_pred             HHHHHHccchhhhhhhHHHHHHHHHHHHHHHh---cCCeEEEECCCCCHHHHHHHHHHHHhCCCc-EEEEEEECCHHHHH
Confidence            00000010000     0001112223333332   235799999888876666655555554443 3468899999999 


Q ss_pred             ---HHHHhcCc
Q 025529          158 ---EERITGRW  165 (251)
Q Consensus       158 ---~~Rl~~r~  165 (251)
                         .+|+..|.
T Consensus       153 l~~~~Rl~~R~  163 (287)
T 1gvn_B          153 LGTIERYETMY  163 (287)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence               88887663

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.26  E-value=1.8e-11  Score=101.22  Aligned_cols=145  Identities=18%  Similarity=0.238  Sum_probs=87.2

Q ss_pred             ccCCCCchhHHHHHHHHhhc---cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC--CceechhHHHHHHHHc----
Q 025529            8 NLEDVPSVDLMTELLRRMKC---ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAA----   78 (251)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~~~li~~~~~~----   78 (251)
                      |+.+.+...+.+.....+..   ...+|+.|++.     |+|||||||+++.|++.++  +.+++.|.+ +.....    
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~-----G~~GsGKSTla~~L~~~l~~~~~~~~~D~~-r~~~~~~~~i   78 (253)
T 2p5t_B            5 DYTDSEFKHALARNLRSLTRGKKSSKQPIAILLG-----GQSGAGKTTIHRIKQKEFQGNIVIIDGDSF-RSQHPHYLEL   78 (253)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEE-----SCGGGTTHHHHHHHHHHTTTCCEEECGGGG-GTTSTTHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHccCCcccCCeEEEEE-----CCCCCCHHHHHHHHHHhcCCCcEEEecHHH-HHhchhHHHH
Confidence            45555566666666555542   22457788888     9999999999999999996  556676654 221100    


Q ss_pred             CCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHH
Q 025529           79 KTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE  158 (251)
Q Consensus        79 ~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~  158 (251)
                      ....|..+.++....   .......++...+.   .+.++|+|+++....+...+...+...+..+ .++++++|.+++.
T Consensus        79 ~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~---~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v-~lv~l~~~~e~~~  151 (253)
T 2p5t_B           79 QQEYGKDSVEYTKDF---AGKMVESLVTKLSS---LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEV-QLALIATKPELSY  151 (253)
T ss_dssp             HTTCSSTTHHHHHHH---HHHHHHHHHHHHHH---TTCCEEEECCTTSSHHHHHHHHHHHHTTCEE-EEEEECCCHHHHH
T ss_pred             HHHcCchHHHHhhHH---HHHHHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcE-EEEEEeCCHHHHH
Confidence            001111111111100   01122223332222   2347999999988877777666666655543 5668899999999


Q ss_pred             HHHhcCc
Q 025529          159 ERITGRW  165 (251)
Q Consensus       159 ~Rl~~r~  165 (251)
                      +|+..|.
T Consensus       152 ~R~~~R~  158 (253)
T 2p5t_B          152 LSTLIRY  158 (253)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998774

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.23  E-value=1.8e-11  Score=99.65  Aligned_cols=80  Identities=19%  Similarity=0.134  Sum_probs=40.0

Q ss_pred             cCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHH
Q 025529          140 QGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV  219 (251)
Q Consensus       140 ~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~  219 (251)
                      .+..||++|||++|++++++|+..|..      ..+                     + . ....+.+|+..++..+.  
T Consensus       143 ~~~~pD~vi~Ld~~~e~~~~Ri~~R~r------~~e---------------------~-~-~~~~~~~rv~~~~~~~~--  191 (230)
T 2vp4_A          143 IHVQADLIIYLRTSPEVAYERIRQRAR------SEE---------------------S-C-VPLKYLQELHELHEDWL--  191 (230)
T ss_dssp             BCCCCSEEEEEECCHHHHHHHHHHHCC------GGG---------------------T-T-CCHHHHHHHHHHHHHHH--
T ss_pred             hcCCCCEEEEEeCCHHHHHHHHHHcCC------ccc---------------------c-c-CcHHHHHHHHHHHHHHH--
Confidence            456799999999999999999986621      000                     0 0 11244555554443331  


Q ss_pred             HHHH-hhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          220 IDYY-SKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       220 ~~~~-~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                      ..++ ...+.++.||++.++++++++|.+.++
T Consensus       192 ~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~  223 (230)
T 2vp4_A          192 IHQRRPQSCKVLVLDADLNLENIGTEYQRSES  223 (230)
T ss_dssp             TSCCSSCCCEEEEEECCC--------------
T ss_pred             HHhcccCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence            0111 233568899999999999999988764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.22  E-value=3.2e-10  Score=88.17  Aligned_cols=123  Identities=15%  Similarity=0.059  Sum_probs=63.7

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee--chhHHHHHHHHcCC--chHHHHHHHHH-cCCCcCHHHHH---H
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRAAVAAKT--PLGIKAKEAMD-KGELVSDDLVV---G  103 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i--~~~~li~~~~~~~~--~~~~~i~~~l~-~~~~~~~~~~~---~  103 (251)
                      ++.|++.     |+|||||||+++.|+++++.+++  +.|.+.........  ..+..+.+... .+.........   .
T Consensus         3 ~~~i~l~-----G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (178)
T 1qhx_A            3 TRMIILN-----GGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAE   77 (178)
T ss_dssp             CCEEEEE-----CCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHH
T ss_pred             ceEEEEE-----CCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHH
Confidence            3456777     99999999999999999987655  47766543111000  00000000000 00000001111   1


Q ss_pred             HHHHHHcCCCCCCceEEeCCCC-CHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          104 IIDEAMKKPSCQKGFILDGFPR-TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       104 ll~~~l~~~~~~~~~Iidg~~~-~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      .+...+.   .+..+|+|+... .......+.+.+.   ..+..+|+|++|.+++.+|+..|.
T Consensus        78 ~~~~~~~---~g~~vi~~~~~~~~~~~~~~~~~~~~---~~~~~~v~l~~~~e~l~~R~~~r~  134 (178)
T 1qhx_A           78 GVVAMAR---AGARIIIDDVFLGGAAAQERWRSFVG---DLDVLWVGVRCDGAVAEGRETARG  134 (178)
T ss_dssp             HHHHHHH---TTCEEEEEECCTTTHHHHHHHHHHHT---TCCEEEEEEECCHHHHHHHHHHTS
T ss_pred             HHHHHHh---cCCeEEEEeccccChHHHHHHHHHhc---CCcEEEEEEECCHHHHHHHHHhhC
Confidence            1222221   234588888542 2222233333332   223468889999999999998874

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.19  E-value=1.1e-10  Score=91.00  Aligned_cols=116  Identities=14%  Similarity=0.077  Sum_probs=62.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechh-HHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATG-DMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII  105 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~-~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll  105 (251)
                      .+++.|+++     |++||||||+++.|++.+   |++++.++ +.++..+.....+...-          ....+.++.
T Consensus         3 ~~g~~i~l~-----G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~~   67 (179)
T 2pez_A            3 MRGCTVWLT-----GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED----------REENVRRIA   67 (179)
T ss_dssp             -CCEEEEEE-----CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHH----------HHHHHHHHH
T ss_pred             CCCcEEEEE-----CCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcccccccc----------HHHHHHHHH
Confidence            357788888     999999999999999998   88877554 22322111100000000          011122221


Q ss_pred             HH--HHcCCCCCCceEEeCCCCC-HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          106 DE--AMKKPSCQKGFILDGFPRT-EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       106 ~~--~l~~~~~~~~~Iidg~~~~-~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                      ..  .+..  .. .+++.++... ......+..+....+ .|+.+|+|++|++++.+|+..+
T Consensus        68 ~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~e~~~~R~~~~  125 (179)
T 2pez_A           68 EVAKLFAD--AG-LVCITSFISPYTQDRNNARQIHEGAS-LPFFEVFVDAPLHVCEQRDVKG  125 (179)
T ss_dssp             HHHHHHHH--TT-CEEEEECCCCCHHHHHHHHHHHHHTT-CCEEEEEEECCHHHHHHHCTTS
T ss_pred             HHHHHHHH--CC-CEEEEecCCcchHHHHHHHHHhhccC-CCeEEEEEeCCHHHHHHHHhhh
Confidence            11  1111  11 2444444433 222223333333333 5789999999999999998653

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.17  E-value=2.1e-09  Score=87.46  Aligned_cols=40  Identities=30%  Similarity=0.343  Sum_probs=35.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA   75 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~   75 (251)
                      +++.|+|.     ||+||||||+++.|++++|+.+++.+.+.+..
T Consensus         8 ~~~~i~i~-----G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~   47 (233)
T 3r20_A            8 GSLVVAVD-----GPAGTGKSSVSRGLARALGARYLDTGAMYRIA   47 (233)
T ss_dssp             -CCEEEEE-----CCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence            46678888     99999999999999999999999999987764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.14  E-value=7.5e-11  Score=104.30  Aligned_cols=103  Identities=15%  Similarity=0.100  Sum_probs=76.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM  109 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l  109 (251)
                      ..+..|++.     |+|||||||+++.|++.+++.+++.|++-        .                ...+...+...+
T Consensus       256 ~~~~lIil~-----G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~----------------~~~~~~~~~~~l  306 (416)
T 3zvl_A          256 PNPEVVVAV-----GFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------S----------------WQRCVSSCQAAL  306 (416)
T ss_dssp             SSCCEEEEE-----SCTTSSHHHHHHHHTGGGTCEECCGGGSC--------S----------------HHHHHHHHHHHH
T ss_pred             CCCEEEEEE-----CCCCCCHHHHHHHHHHhcCcEEEccchHH--------H----------------HHHHHHHHHHHH
Confidence            356678888     99999999999999999999999998751        0                111222222333


Q ss_pred             cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      .   ....+|+|+......+...+..++...+.. ..+|+|++|.+++.+|+..|.
T Consensus       307 ~---~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~-~~~v~l~~~~e~l~~R~~~R~  358 (416)
T 3zvl_A          307 R---QGKRVVIDNTNPDVPSRARYIQCAKDAGVP-CRCFNFCATIEQARHNNRFRE  358 (416)
T ss_dssp             H---TTCCEEEESCCCSHHHHHHHHHHHHHHTCC-EEEEEECCCHHHHHHHHHHHH
T ss_pred             h---cCCcEEEeCCCCCHHHHHHHHHHHHHcCCe-EEEEEEeCCHHHHHHHHHhhc
Confidence            2   235699999988888777777766655544 468899999999999999885

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=99.14  E-value=1e-09  Score=89.83  Aligned_cols=29  Identities=24%  Similarity=0.317  Sum_probs=25.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh-CCc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-CLC   64 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-~~~   64 (251)
                      +|+.|+|.     |++||||||+++.|++++ +..
T Consensus         1 ~~~~i~~~-----G~~g~GKtt~~~~l~~~l~~~~   30 (241)
T 2ocp_A            1 GPRRLSIE-----GNIAVGKSTFVKLLTKTYPEWH   30 (241)
T ss_dssp             CCEEEEEE-----ECTTSSHHHHHHHHHHHCTTSE
T ss_pred             CCeEEEEE-----cCCCCCHHHHHHHHHHHcCCCe
Confidence            46788888     999999999999999998 443

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.04  E-value=3.3e-09  Score=84.26  Aligned_cols=38  Identities=18%  Similarity=0.194  Sum_probs=31.9

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCc--eechhHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLC--HLATGDM   71 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~--~i~~~~l   71 (251)
                      ..++..|+|+     |++||||||+++.|+..+   |..  +++.+++
T Consensus        22 ~~~g~~i~l~-----G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~   64 (200)
T 3uie_A           22 DQKGCVIWVT-----GLSGSGKSTLACALNQMLYQKGKLCYILDGDNV   64 (200)
T ss_dssp             TSCCEEEEEE-----CSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCCeEEEEE-----CCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence            4567788899     999999999999999998   655  7777665

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.00  E-value=1.5e-09  Score=99.84  Aligned_cols=114  Identities=13%  Similarity=0.082  Sum_probs=64.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechh-HHHHHHHHcCCchHHHHH-HHHHcCCCcCHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATG-DMLRAAVAAKTPLGIKAK-EAMDKGELVSDDLVVGII  105 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~-~li~~~~~~~~~~~~~i~-~~l~~~~~~~~~~~~~ll  105 (251)
                      +++.|+|+     |+|||||||+++.|++++   |++++.+| +.++..+.....+....+ +.+        ..+..++
T Consensus        51 ~g~lIvLt-----GlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~--------r~i~eva  117 (630)
T 1x6v_B           51 RGCTVWLT-----GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV--------RRIAEVA  117 (630)
T ss_dssp             CCEEEEEE-----CSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH--------HHHHHHH
T ss_pred             CCCEEEEE-----eCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH--------HHHHHHH
Confidence            67788888     999999999999999999   88877765 444432221111110000 000        0111222


Q ss_pred             HHHHcCCCCCCceEEeCCCCC-HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529          106 DEAMKKPSCQKGFILDGFPRT-EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT  162 (251)
Q Consensus       106 ~~~l~~~~~~~~~Iidg~~~~-~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~  162 (251)
                      ...+.   .+ .+++.++... ......+..++... ..++++|||++|.+++.+|+.
T Consensus       118 ~~~l~---~G-~iVI~d~~s~~~~~r~~~r~ll~~~-g~p~~vV~Ldap~Evl~~Rl~  170 (630)
T 1x6v_B          118 KLFAD---AG-LVCITSFISPYTQDRNNARQIHEGA-SLPFFEVFVDAPLHVCEQRDV  170 (630)
T ss_dssp             HHHHH---TT-CEEEEECCCCCHHHHHHHHHHHHTT-TCCEEEEEEECCHHHHHHHCT
T ss_pred             HHHHh---CC-CEEEEeCchhhHHHHHHHHHHHHhC-CCCeEEEEEECCHHHHHHHhc
Confidence            22221   12 2333334332 22334444444333 346789999999999999976

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=98.93  E-value=1.2e-08  Score=92.64  Aligned_cols=124  Identities=13%  Similarity=0.130  Sum_probs=71.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc-----eechhHHHHHHHHcCCchHHHHHHHHHcCCC----cCHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC-----HLATGDMLRAAVAAKTPLGIKAKEAMDKGEL----VSDDLV  101 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~-----~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~  101 (251)
                      .+..|+++     |.|||||||+|+.|++++++.     +++.|++.+.........     .++.....    ....+.
T Consensus        34 ~~~lIvlv-----GlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~-----~~f~~~~~~~~~~re~~~  103 (520)
T 2axn_A           34 SPTVIVMV-----GLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSY-----NFFRPDNEEAMKVRKQCA  103 (520)
T ss_dssp             CCEEEEEE-----CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCG-----GGGCTTCHHHHHHHHHHH
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccc-----cccCcccHHHHHHHHHHH
Confidence            45677788     999999999999999998543     367788655533221100     01100000    000111


Q ss_pred             HHHHHHHHcCC--CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecC-HHHHHHHHhcCc
Q 025529          102 VGIIDEAMKKP--SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID-DAVLEERITGRW  165 (251)
Q Consensus       102 ~~ll~~~l~~~--~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~-~e~~~~Rl~~r~  165 (251)
                      ...+......+  ..+..+|+|+..........+...+...+.. .++|++.|+ ++.+.+|+..|+
T Consensus       104 ~~~l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~-v~~l~~~~~d~e~i~~ri~~r~  169 (520)
T 2axn_A          104 LAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFK-AFFIESVCDDPTVVASNIMEVK  169 (520)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCE-EEEEEEECCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCe-EEEEEEeCChHHHHHHHHHhhh
Confidence            11121111111  2345789999888888777776666555442 356677777 677778886654

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.91  E-value=1.6e-10  Score=92.55  Aligned_cols=78  Identities=21%  Similarity=0.194  Sum_probs=45.4

Q ss_pred             CcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHH
Q 025529          143 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY  222 (251)
Q Consensus       143 ~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~  222 (251)
                      .|+.+|+|++|++++.+|+..|.... .++.                     ..+.+. ...+.+++...+..   +.+.
T Consensus       132 ~~d~~i~l~~~~~~~~~R~~~R~~~~-~~~~---------------------~d~~e~-~~~~~~~~~~~~~~---~~~~  185 (214)
T 1gtv_A          132 KPDWQVLLAVSAELAGERSRGRAQRD-PGRA---------------------RDNYER-DAELQQRTGAVYAE---LAAQ  185 (214)
T ss_dssp             BCEEEEEEEEEHHHHHHHHHHHHHEB-BEEE---------------------EEEEEE-EHHHHHHHHHHHHH---HHHE
T ss_pred             CCCEEEEEeCCHHHHHHHHHcccccc-cccc---------------------cccccc-cHHHHHHHHHHHHH---HHHh
Confidence            68999999999999999999874210 0000                     000000 13445554332211   1111


Q ss_pred             HhhCCcEEEEcCCCChhHHHHHHHH
Q 025529          223 YSKKGIVAQLHAEKPPQEVTSEVQK  247 (251)
Q Consensus       223 ~~~~~~~~~id~~~~~eev~~~i~~  247 (251)
                      +. ...++.||++.+++++++.|.+
T Consensus       186 ~~-~~~~~vId~~~~~~~v~~~i~~  209 (214)
T 1gtv_A          186 GW-GGRWLVVGADVDPGRLAATLAP  209 (214)
T ss_dssp             EE-EEEEEEEEEEEBHHHHHHHHC-
T ss_pred             CC-CCCEEEEeCCCCHHHHHHHhcC
Confidence            10 1357889999999999998854

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.90  E-value=2.7e-09  Score=97.24  Aligned_cols=127  Identities=16%  Similarity=0.063  Sum_probs=70.6

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHHHHcCCchHHHHHHHH
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAM   90 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l   90 (251)
                      ++.+.+...+......++.|++.     |++||||||+++.|++.++     +.+++.|. +++.+.....+...-+...
T Consensus       356 eV~~~lr~~~~~~~~~~~~I~l~-----G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~-ir~~l~~~~~f~~~er~~~  429 (546)
T 2gks_A          356 EVAEILAETYVPKHKQGFCVWLT-----GLPCAGKSTIAEILATMLQARGRKVTLLDGDV-VRTHLSRGLGFSKEDRITN  429 (546)
T ss_dssp             HHHHHHHHHSCCGGGCCEEEEEE-----CSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH-HHHHTCTTCCSSHHHHHHH
T ss_pred             hHHHHHHHhhccccccceEEEcc-----CCCCCCHHHHHHHHHHHhhhcCCeEEEECchH-hhhhhcccccccHHHHHHH
Confidence            45554444443334457788888     9999999999999999886     36677654 4443322111111100000


Q ss_pred             HcCCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcC-EEEEEecCHHHHHHHHh
Q 025529           91 DKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVD-KVLNFAIDDAVLEERIT  162 (251)
Q Consensus        91 ~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~-~vI~L~~~~e~~~~Rl~  162 (251)
                             -..+...+...+.   .+.++|+|+..........+.+++    ..++ .+|+|++|.+++.+|+.
T Consensus       430 -------l~~i~~~~~~~l~---~G~~VI~d~~~~~~~~r~~~~~~l----~~~d~~vV~L~~~~e~~~~Rl~  488 (546)
T 2gks_A          430 -------ILRVGFVASEIVK---HNGVVICALVSPYRSARNQVRNMM----EEGKFIEVFVDAPVEVCEERDV  488 (546)
T ss_dssp             -------HHHHHHHHHHHHH---TTCEEEEECCCCCHHHHHHHHTTS----CTTCEEEEEEECCGGGHHHHCC
T ss_pred             -------HHHHHHHHHHHHh---CCCEEEEEcCCCCHHHHHHHHHHh----hcCCEEEEEEeCCHHHHHHHhh
Confidence                   0011122222222   345688886433333223222221    1246 89999999999999975

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.88  E-value=1.5e-08  Score=80.35  Aligned_cols=27  Identities=19%  Similarity=0.358  Sum_probs=23.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      ++..++|+     ||+||||||+++.|+..+.
T Consensus         6 ~g~ii~l~-----Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            6 KANLFIIS-----APSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCCEEEEE-----CCTTSCHHHHHHHHHHHSS
T ss_pred             CCcEEEEE-----CcCCCCHHHHHHHHHhhCC
Confidence            45678888     9999999999999998764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.87  E-value=9e-09  Score=82.30  Aligned_cols=28  Identities=29%  Similarity=0.444  Sum_probs=24.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .++..|+|.     ||+||||||+++.|+..+.
T Consensus         6 ~~g~~i~l~-----GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLS-----GPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEE-----CCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEE-----CcCCCCHHHHHHHHHhhCC
Confidence            356678888     9999999999999999874

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.84  E-value=4e-08  Score=77.19  Aligned_cols=163  Identities=17%  Similarity=0.129  Sum_probs=87.5

Q ss_pred             EEEEeecccCCCCCChhHHHHHHHHHhCC-ceechhHHHHHHHHcCC----c----hHHHHHHHHHcCCCcCHH------
Q 025529           35 LILIIVWLAGPPGSGKGTQSPIIKDEYCL-CHLATGDMLRAAVAAKT----P----LGIKAKEAMDKGELVSDD------   99 (251)
Q Consensus        35 i~i~ii~i~G~~gsGKST~a~~La~~~~~-~~i~~~~li~~~~~~~~----~----~~~~i~~~l~~~~~~~~~------   99 (251)
                      |+|.     ||+||||||+++.|.+.+.- ..+++....|. ..++.    .    -...+.+.+.+|..+...      
T Consensus         4 IVi~-----GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~-pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~   77 (186)
T 1ex7_A            4 IVIS-----GPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT-PRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNY   77 (186)
T ss_dssp             EEEE-----CCTTSSHHHHHHHHHHHCTTTEEECCCEECSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             EEEE-----CCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC-CCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCce
Confidence            6667     99999999999999888632 22333222111 00000    0    113455555555443211      


Q ss_pred             --HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceeccc
Q 025529          100 --LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTK  177 (251)
Q Consensus       100 --~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~  177 (251)
                        +...-+...+.   .++.+|+|.-+....+..   .   ..+..+..++.+-.|.+++.+|+..|.            
T Consensus        78 YGt~~~~v~~~l~---~g~~vil~id~~g~~~~k---~---~~~~~~~~Ifi~pps~e~L~~RL~~Rg------------  136 (186)
T 1ex7_A           78 YGSTVASVKQVSK---SGKTCILDIDMQGVKSVK---A---IPELNARFLFIAPPSVEDLKKRLEGRG------------  136 (186)
T ss_dssp             EEEEHHHHHHHHH---HTSEEEEECCHHHHHHHH---T---CGGGCCEEEEEECSCHHHHHHHHHHHC------------
T ss_pred             eeeecceeeehhh---CCCEEEecCCHHHHHHHH---H---hcccCceEEEEeCCCHHHHHHHHHhcC------------
Confidence              00111222221   134577775433222222   1   112234445555667799999999884            


Q ss_pred             CCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          178 FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       178 ~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                           .++.+.+++|+.........   .....=.++.+|  .++++.+++|.++|.
T Consensus       137 ---------------------~e~~e~i~~Rl~~a~~e~~~---~~~~~fD~vIvN--ddle~a~~~l~~iI~  183 (186)
T 1ex7_A          137 ---------------------TETEESINKRLSAAQAELAY---AETGAHDKVIVN--DDLDKAYKELKDFIF  183 (186)
T ss_dssp             ---------------------CSCHHHHHHHHHHHHHHHHH---HTTTCSSEEEEC--SSHHHHHHHHHHHHT
T ss_pred             ---------------------CCCHHHHHHHHHHHHHHHhh---ccccCCcEEEEC--cCHHHHHHHHHHHHH
Confidence                                 56678999999876543321   111111344555  479999999998884

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.84  E-value=6e-08  Score=76.85  Aligned_cols=27  Identities=33%  Similarity=0.518  Sum_probs=24.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..++|+     ||+||||||+++.|+..+
T Consensus         4 ~~g~~i~l~-----G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            4 EKGLLIVLS-----GPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCCEEEEE-----CSTTSCHHHHHHHHHHCT
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHHHhh
Confidence            356788888     999999999999999977

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.81  E-value=1.4e-08  Score=93.04  Aligned_cols=113  Identities=12%  Similarity=0.063  Sum_probs=60.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC----C--ceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC----L--CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG  103 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~----~--~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~  103 (251)
                      .+++.|+|.     |++||||||+++.|+++++    .  .+++.|. ++..+.....+...-+..       ....+..
T Consensus       394 q~~~~I~l~-----GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~-ir~~l~~~~~f~~~er~~-------~i~ri~~  460 (573)
T 1m8p_A          394 TQGFTIFLT-----GYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT-VRHELSSELGFTREDRHT-------NIQRIAF  460 (573)
T ss_dssp             TCCEEEEEE-----CSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH-HHHHTCTTCCCSHHHHHH-------HHHHHHH
T ss_pred             ccceEEEee-----cCCCCCHHHHHHHHHHHhcccCCceEEEECcHH-HHHHhccccCCChhHHHH-------HHHHHHH
Confidence            456778888     9999999999999999986    3  4555544 444322111100000000       0001112


Q ss_pred             HHHHHHcCCCCCCceEEeCCCCC-HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025529          104 IIDEAMKKPSCQKGFILDGFPRT-EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI  161 (251)
Q Consensus       104 ll~~~l~~~~~~~~~Iidg~~~~-~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl  161 (251)
                      ++.....   ....+|.+ +... ......+.+++...+  +..+|||++|.+++.+|.
T Consensus       461 v~~~~~~---~g~~VI~~-~is~~~~~R~~~r~l~~~~g--~~~~V~Lda~~ev~~~R~  513 (573)
T 1m8p_A          461 VATELTR---AGAAVIAA-PIAPYEESRKFARDAVSQAG--SFFLVHVATPLEHCEQSD  513 (573)
T ss_dssp             HHHHHHH---TTCEEEEE-CCCCCHHHHHHHHHHHHTTS--EEEEEEECCCHHHHHHHC
T ss_pred             HHHHHHh---CCCEEEEE-cCCCcHHHHHHHHHHHHhcC--CeEEEEEeCCHHHHHHHh
Confidence            2222221   12335555 3332 233333444443322  458999999999999995

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=98.80  E-value=5.1e-08  Score=83.25  Aligned_cols=28  Identities=25%  Similarity=0.234  Sum_probs=25.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      +++.|+|+     |+.||||||+++.|++.++.
T Consensus         6 ~~~fI~~E-----G~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            6 TIVRIYLD-----GVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEE-----CSTTSSHHHHHHHHHSGGGC
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHhcc
Confidence            56889999     99999999999999999853

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.80  E-value=5.2e-08  Score=76.36  Aligned_cols=117  Identities=15%  Similarity=0.096  Sum_probs=61.4

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCC-ceechhHHHHHHHHcCC-chHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCL-CHLATGDMLRAAVAAKT-PLGIKAKEAMDKGELVSDDLVVGIIDEAMKK  111 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~-~~i~~~~li~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~  111 (251)
                      .++++     ||+||||||+++.|+..++. .+++.+++.... ..+. +-........    .+ .+.+......... 
T Consensus         4 ii~l~-----G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~~~~~~~~~~~~----~~-~~~l~~~~~~~~~-   71 (189)
T 2bdt_A            4 LYIIT-----GPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGYRPPWESDELLA----LT-WKNITDLTVNFLL-   71 (189)
T ss_dssp             EEEEE-----CSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTCCCGGGCHHHHH----HH-HHHHHHHHHHHHH-
T ss_pred             EEEEE-----CCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-ccccccCccchhHHH----HH-HHHHHHHHHHHHh-
Confidence            45566     99999999999999998764 678877653210 0000 0000000000    00 0111111111111 


Q ss_pred             CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCC-cCEEEEEecCHHHHHHHHhcCc
Q 025529          112 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKK-VDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       112 ~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~-~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                        ....+|+|++. .......+..++.+.+.. ...+++|.+|.+++.+|+..|.
T Consensus        72 --~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~  123 (189)
T 2bdt_A           72 --AQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK  123 (189)
T ss_dssp             --TTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred             --cCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence              22357889853 333333333433211222 3356889999999999998874

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.75  E-value=2.1e-08  Score=82.70  Aligned_cols=121  Identities=18%  Similarity=0.179  Sum_probs=66.8

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHH-HHH--cCCchHHHHHH---HHHcC-----CCcCHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA-AVA--AKTPLGIKAKE---AMDKG-----ELVSDDLVV  102 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~-~~~--~~~~~~~~i~~---~l~~~-----~~~~~~~~~  102 (251)
                      .++|+     ||+||||||+|+.|+++++..+++.|++... ...  ...+.......   .+...     .......+.
T Consensus         3 li~I~-----G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~   77 (253)
T 2ze6_A            3 LHLIY-----GPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAH   77 (253)
T ss_dssp             EEEEE-----CCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHH
T ss_pred             EEEEE-----CCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHH
Confidence            45566     9999999999999999999999999875311 000  00000000000   00000     012233344


Q ss_pred             HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHh----cCCCcCEEEEEecCH-HHHHHHHhcCc
Q 025529          103 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEK----QGKKVDKVLNFAIDD-AVLEERITGRW  165 (251)
Q Consensus       103 ~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~----~~~~~~~vI~L~~~~-e~~~~Rl~~r~  165 (251)
                      +.....+.....+..+|+++...  .   .+..++..    .+.. ..+|||++|. +++.+|+..|.
T Consensus        78 ~~~~~~i~~~~~g~~vIl~gg~~--~---~~~~~~~~~~~~~~~~-~~~i~l~~~~~e~l~~Rl~~R~  139 (253)
T 2ze6_A           78 RRLIFEVDWRKSEEGLILEGGSI--S---LLNCMAKSPFWRSGFQ-WHVKRLRLGDSDAFLTRAKQRV  139 (253)
T ss_dssp             HHHHHHHHTTTTSSEEEEEECCH--H---HHHHHHHCTTTTSSCE-EEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeEEeccHH--H---HHHHHHhcccccccCc-eEEEEecchhHHHHHHHHHHHH
Confidence            44444442223345678776432  1   22233322    2222 2688999997 99999999874

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.70  E-value=8.4e-08  Score=76.43  Aligned_cols=38  Identities=16%  Similarity=0.143  Sum_probs=30.8

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC--CceechhHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLATGDM   71 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~~~l   71 (251)
                      +.++..+.|.     ||+||||||+++.|+..++  +.+++.+..
T Consensus         3 ~~~~~~i~i~-----G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~   42 (211)
T 3asz_A            3 APKPFVIGIA-----GGTASGKTTLAQALARTLGERVALLPMDHY   42 (211)
T ss_dssp             --CCEEEEEE-----ESTTSSHHHHHHHHHHHHGGGEEEEEGGGC
T ss_pred             CCCcEEEEEE-----CCCCCCHHHHHHHHHHHhCCCeEEEecCcc
Confidence            4466677888     9999999999999999988  877777654

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.68  E-value=7.2e-09  Score=87.22  Aligned_cols=38  Identities=13%  Similarity=0.245  Sum_probs=28.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLR   73 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~   73 (251)
                      +++.|.|.     |++||||||+++.|++.++     +.++++|++.+
T Consensus         4 ~~~iIgIt-----G~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVT-----GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEE-----SCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEE-----CCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            34456666     9999999999999999887     78899887653

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=98.67  E-value=4e-07  Score=72.05  Aligned_cols=113  Identities=15%  Similarity=0.132  Sum_probs=68.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCC-----ch----------HHHHHH----
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKT-----PL----------GIKAKE----   88 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~-----~~----------~~~i~~----   88 (251)
                      +.+.|+|.     |.|||||+|++..|.+.+|   ++.+++++.+++......     .+          +..+..    
T Consensus        10 ~~~II~it-----Gk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~   84 (202)
T 3ch4_B           10 PRLVLLFS-----GKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEE   84 (202)
T ss_dssp             CSEEEEEE-----ECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHH
T ss_pred             CCEEEEEE-----CCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHH
Confidence            44455555     9999999999999999885   778999999985332111     10          001110    


Q ss_pred             HHHcCCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025529           89 AMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI  161 (251)
Q Consensus        89 ~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl  161 (251)
                      ....+.    ..+..+.   +... ....+||||. +.....+.|.+.+.    ..-.+|.+.+++++..+|.
T Consensus        85 ~R~~d~----~~~~~~~---~~~~-~~~~vII~dv-R~~~Ev~~fr~~~g----~~~~iirI~as~~~R~~Rg  144 (202)
T 3ch4_B           85 KRQADP----GFFCRKI---VEGI-SQPIWLVSDT-RRVSDIQWFREAYG----AVTQTVRVVALEQSRQQRG  144 (202)
T ss_dssp             HHHHCT----TTTHHHH---SBTC-CCSEEEECCC-CSHHHHHHHHHHHG----GGEEEEEEEECHHHHHHTT
T ss_pred             HHhcCc----hHHHHHH---HHhc-CCCcEEEeCC-CCHHHHHHHHHhCC----CcEEEEEEECCHHHHHHHh
Confidence            000011    1111221   1122 2236888885 78888888776542    1236899999999999993

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=98.64  E-value=2.6e-07  Score=77.44  Aligned_cols=165  Identities=13%  Similarity=0.106  Sum_probs=92.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID  106 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~  106 (251)
                      ..++.|+|.     |..||||+|+++.|.+.++   +.++.+..          |-+....+              ..+.
T Consensus        84 ~~~vlIvfE-----G~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~----------Pt~eE~~~--------------~yl~  134 (304)
T 3czq_A           84 GKRVMAVFE-----GRDAAGKGGAIHATTANMNPRSARVVALTK----------PTETERGQ--------------WYFQ  134 (304)
T ss_dssp             CCCEEEEEE-----ESTTSSHHHHHHHHHTTSCTTTEEEEECCS----------CCHHHHTS--------------CTTH
T ss_pred             CCCeEEEEe-----CCCCCCHHHHHHHHHHHhcccCCeEEEeCC----------cChHHHhc--------------hHHH
Confidence            568999999     9999999999999999984   43444321          11111110              0112


Q ss_pred             HHHcCCC-CCCceEEeCCCC------------CHH-------HHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025529          107 EAMKKPS-CQKGFILDGFPR------------TEV-------QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI  166 (251)
Q Consensus       107 ~~l~~~~-~~~~~Iidg~~~------------~~~-------~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~  166 (251)
                      .....++ .+.-+|.|++-.            ...       +...|+..+...| .+++.|+|++|.++..+|+..|..
T Consensus       135 R~~~~LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G-~~~lKf~L~Is~eeq~kR~~~R~~  213 (304)
T 3czq_A          135 RYVATFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEG-IHLFKFWINIGREMQLKRFHDRRH  213 (304)
T ss_dssp             HHHTTCCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHHhcccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCC-CeeEEEEEECCHHHHHHHHHHhhc
Confidence            2333343 223355665421            122       1122222344444 688999999999999999987742


Q ss_pred             CCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHH--HHHHHHHhccHHHHHHHhh-CCcEEEEcCCCCh---hH
Q 025529          167 HPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLK--SRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPP---QE  240 (251)
Q Consensus       167 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~--~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~~---ee  240 (251)
                      ++..                          +-..++..++  .....|.+....+...-.. ...|+.||++...   ..
T Consensus       214 dp~k--------------------------~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~  267 (304)
T 3czq_A          214 DPLK--------------------------IWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRIN  267 (304)
T ss_dssp             CTTT--------------------------GGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHH
T ss_pred             Cccc--------------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHH
Confidence            2110                          0012222333  3335555555555544332 3469999998754   45


Q ss_pred             HHHHHHHHhc
Q 025529          241 VTSEVQKALS  250 (251)
Q Consensus       241 v~~~i~~~l~  250 (251)
                      +.+.|.+.|.
T Consensus       268 v~~~Il~~l~  277 (304)
T 3czq_A          268 VIRHMLTKLD  277 (304)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHHh
Confidence            6666666553

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.56  E-value=8.1e-08  Score=76.22  Aligned_cols=42  Identities=19%  Similarity=0.124  Sum_probs=33.3

Q ss_pred             hhHHHHHHHHhhcc-CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           15 VDLMTELLRRMKCA-SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        15 ~~~~~~~~~~~~~~-~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+++++++.++... +.++..+.+.     |++||||||+++.|+..+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~~~i~i~-----G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A            4 RDRIDFLCKTILAIKTAGRLVLGID-----GLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             HHHHHHHHHHHHTSCCSSSEEEEEE-----ECTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            35677777777643 4567778888     999999999999999876

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.46  E-value=3.8e-06  Score=68.59  Aligned_cols=35  Identities=20%  Similarity=0.053  Sum_probs=26.1

Q ss_pred             hhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           25 MKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        25 ~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      +.....++..+.|.     ||.||||||+++.|+..+|..
T Consensus        18 isl~i~~g~iigI~-----G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           18 LYFQSMRPFLIGVS-----GGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             -----CCSEEEEEE-----CSTTSSHHHHHHHHHHHHTGG
T ss_pred             eeccCCCCEEEEEE-----CCCCCCHHHHHHHHHHHhchh
Confidence            33344566677788     999999999999999988865

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.41  E-value=7.9e-07  Score=81.00  Aligned_cols=128  Identities=15%  Similarity=0.139  Sum_probs=56.9

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC------CceechhHHHHHHHHcCCchHH-HHHH
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC------LCHLATGDMLRAAVAAKTPLGI-KAKE   88 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~------~~~i~~~~li~~~~~~~~~~~~-~i~~   88 (251)
                      ++.+.+...+.....++..++|+     |++||||||+++.|+..++      +.+++.+++... +...-.+.. ....
T Consensus       353 eV~~vLR~~~~~~~~~G~iI~Li-----G~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~-l~~~l~f~~~~r~~  426 (552)
T 3cr8_A          353 EVLAELHRQTPPRERQGFTVFFT-----GLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH-LSSELGFSKAHRDV  426 (552)
T ss_dssp             HHHHHHHHHSCCGGGSCEEEEEE-----ESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH-TTSSCCCSHHHHHH
T ss_pred             chhhhhhhhcccccccceEEEEE-----CCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh-hccccCCCHHHHHH
Confidence            34443333332223467889999     9999999999999999984      445777665432 111000000 0000


Q ss_pred             HHHcCCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529           89 AMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT  162 (251)
Q Consensus        89 ~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~  162 (251)
                      .+        ..+..+.+. +..  ....++..+............+++...+  .-.+|||++|.+++.+|..
T Consensus       427 ~~--------r~i~~v~q~-l~~--~~~ivi~~~~~~~~~~r~~~r~lL~~~g--~f~~V~L~~~~e~~~~R~~  487 (552)
T 3cr8_A          427 NV--------RRIGFVASE-ITK--NRGIAICAPIAPYRQTRRDVRAMIEAVG--GFVEIHVATPIETCESRDR  487 (552)
T ss_dssp             HH--------HHHHHHHHH-HHH--TTCEEEECCCCCCHHHHHHHHHHHHTTS--EEEEEEECC----------
T ss_pred             HH--------HHHHHHHHH-HHh--cCCEEEEecCCccHHHHHHHHHHHHHcC--CEEEEEEcCCHHHHHHhcc
Confidence            00        001111111 111  1122333332112333334445554433  2378999999999999964

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=98.41  E-value=1.8e-06  Score=73.84  Aligned_cols=28  Identities=25%  Similarity=0.203  Sum_probs=24.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHH-HHHHHHhCC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQS-PIIKDEYCL   63 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a-~~La~~~~~   63 (251)
                      +++.|+|.     |+.||||||++ +.|++.++-
T Consensus        11 ~~~~I~iE-----G~~GaGKTT~~~~~L~~~l~~   39 (341)
T 1osn_A           11 GVLRIYLD-----GAYGIGKTTAAEEFLHHFAIT   39 (341)
T ss_dssp             EEEEEEEE-----ESSSSCTTHHHHHHHHTTTTS
T ss_pred             CceEEEEe-----CCCCCCHHHHHHHHHHHHHhh
Confidence            46778888     99999999999 999998864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.39  E-value=5.6e-07  Score=72.79  Aligned_cols=27  Identities=26%  Similarity=0.338  Sum_probs=17.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHH-HHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIK-DEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La-~~~   61 (251)
                      .++..++|+     ||+||||||+++.|+ ..+
T Consensus        25 ~~G~ii~l~-----Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           25 SVGVILVLS-----SPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ECCCEEEEE-----CSCC----CHHHHHHC---
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHHhcCC
Confidence            456678888     999999999999999 665

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=98.39  E-value=2.1e-06  Score=73.21  Aligned_cols=27  Identities=26%  Similarity=0.329  Sum_probs=21.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      +++.|+|+     |+.||||||+++.|++.+.
T Consensus         3 ~~~fI~~E-----G~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            3 TLLRVYID-----GPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             EEEEEEEC-----SCTTSSHHHHHHHHTC---
T ss_pred             ccEEEEEE-----CCCCCCHHHHHHHHHHHhh
Confidence            45778888     9999999999999999874

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=98.37  E-value=4.1e-06  Score=72.43  Aligned_cols=28  Identities=25%  Similarity=0.310  Sum_probs=22.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .+++.|+|+     |+.||||||+++.|++.+.
T Consensus        47 ~~~~fIt~E-----G~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           47 PTLLRVYID-----GPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CEEEEEEEC-----SSTTSSHHHHHHHHHC---
T ss_pred             CCceEEEEE-----CCCCCCHHHHHHHHHHHhh
Confidence            456678888     9999999999999999874

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.35  E-value=4.4e-06  Score=74.81  Aligned_cols=118  Identities=14%  Similarity=0.182  Sum_probs=66.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC-----ceechhHHHHHHHHcC-C------chHHHHHHHHHcCCCcC
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL-----CHLATGDMLRAAVAAK-T------PLGIKAKEAMDKGELVS   97 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~-----~~i~~~~li~~~~~~~-~------~~~~~i~~~l~~~~~~~   97 (251)
                      ..+..|+++     |.|||||||+++.|++.++.     ..++.+++... .... .      ..+.......       
T Consensus        37 ~~~~~Ivlv-----GlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~-~~g~~~~~~ifd~~g~~~~r~r-------  103 (469)
T 1bif_A           37 NCPTLIVMV-----GLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD-MVKTYKSFEFFLPDNEEGLKIR-------  103 (469)
T ss_dssp             -CCEEEEEE-----CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHCSCCCGGGGCTTCHHHHHHH-------
T ss_pred             CCcEEEEEE-----CCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh-hccCCCcccccCCCCHHHHHHH-------
Confidence            356788888     99999999999999998753     45555664443 2211 1      1111000000       


Q ss_pred             HHHHHHHH---HHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEe---cCHHHHHHHHhcC
Q 025529           98 DDLVVGII---DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA---IDDAVLEERITGR  164 (251)
Q Consensus        98 ~~~~~~ll---~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~---~~~e~~~~Rl~~r  164 (251)
                      ..+....+   ...+.. ..+..+|+|...........+...+...+.   .+++|+   .+++.+.+|+..+
T Consensus       104 e~~~~~~l~~~~~~l~~-~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~---~vv~l~~~~~~~~~i~~r~~~~  172 (469)
T 1bif_A          104 KQCALAALNDVRKFLSE-EGGHVAVFDATNTTRERRAMIFNFGEQNGY---KTFFVESICVDPEVIAANIVQV  172 (469)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCCSEEEEESCCCSHHHHHHHHHHHHHHTC---EEEEEEECCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-CCCCEEEEeCCCCCHHHHHHHHHHHHhcCC---cEEEEEEECCCHHHHHHHHHHh
Confidence            11111122   222211 233468899987777777777666554433   345666   4477888887754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.16  E-value=0.00014  Score=58.32  Aligned_cols=27  Identities=19%  Similarity=0.268  Sum_probs=23.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      ++..++|+     ||+||||||+.+.|+..+.
T Consensus        15 ~G~ii~l~-----GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVS-----APSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEE-----CCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEE-----CCCCCCHHHHHHHHhccCC
Confidence            56678888     9999999999999998764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.15  E-value=1.8e-06  Score=73.34  Aligned_cols=37  Identities=22%  Similarity=0.234  Sum_probs=28.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-------CceechhHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-------LCHLATGDM   71 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-------~~~i~~~~l   71 (251)
                      .++..+.|.     ||+||||||+++.|+..++       +..++.|..
T Consensus        90 ~~p~iigI~-----GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f  133 (321)
T 3tqc_A           90 KVPYIIGIA-----GSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF  133 (321)
T ss_dssp             CCCEEEEEE-----CCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEE-----CCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence            345566677     9999999999999998875       445666653

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.05  E-value=2e-05  Score=70.67  Aligned_cols=29  Identities=17%  Similarity=0.325  Sum_probs=26.8

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .+.++.|+|.     |..||||+|+++.|.+.++
T Consensus        40 ~~~~vlIvfE-----G~D~AGKg~~Ik~l~~~l~   68 (500)
T 3czp_A           40 ARFPVIILIN-----GIEGAGKGETVKLLNEWMD   68 (500)
T ss_dssp             CCCCEEEEEE-----ECTTSSHHHHHHHHHHHSC
T ss_pred             CCCCEEEEEe-----CcCCCCHHHHHHHHHHhcC
Confidence            5789999999     9999999999999999984

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=98.02  E-value=3.2e-06  Score=68.92  Aligned_cols=39  Identities=26%  Similarity=0.459  Sum_probs=33.4

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHH
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA   77 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~   77 (251)
                      +|+|+|++||||||+++.|++.+|+++++.++.+++.+.
T Consensus         3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~   41 (241)
T 1dek_A            3 LIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA   41 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence            466779999999999999999999999998877766544

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.01  E-value=1.6e-05  Score=67.18  Aligned_cols=36  Identities=14%  Similarity=0.214  Sum_probs=29.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-------CceechhH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-------LCHLATGD   70 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-------~~~i~~~~   70 (251)
                      .++..+.|.     |++||||||+++.|+..++       +.++++|.
T Consensus        78 ~~g~iigI~-----G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~  120 (308)
T 1sq5_A           78 RIPYIISIA-----GSVAVGKSTTARVLQALLSRWPEHRRVELITTDG  120 (308)
T ss_dssp             CCCEEEEEE-----ECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             CCCEEEEEE-----CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence            456677777     9999999999999999876       55666664

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=97.95  E-value=3.6e-05  Score=69.04  Aligned_cols=109  Identities=16%  Similarity=0.120  Sum_probs=64.7

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII  105 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll  105 (251)
                      ...++.|+|.     |..||||+|+++.|.+.++   +.++....          |.....      +.        ..+
T Consensus       297 ~~~~vlIvfE-----G~DaAGKg~~Ik~l~~~ldprg~~V~~~~~----------Pt~~E~------~~--------~yl  347 (500)
T 3czp_A          297 RQHSLVAVFE-----GNDAAGKGGAIRRVTDALDPRQYHIVPIAA----------PTEEER------AQ--------PYL  347 (500)
T ss_dssp             GGCEEEEEEE-----ESTTSCHHHHHHHHHTTSCGGGCEEEECCS----------CCHHHH------TS--------CTT
T ss_pred             CCCCEEEEEe-----ccCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhhh------cc--------hHH
Confidence            4578999999     9999999999999999883   44443321          111111      00        111


Q ss_pred             HHHHcCCCCC-CceEEeCCCC------------CHHHH-------HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          106 DEAMKKPSCQ-KGFILDGFPR------------TEVQA-------QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       106 ~~~l~~~~~~-~~~Iidg~~~------------~~~~~-------~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      .......+.. .-.|+|++-.            +..++       ..|+..+...| .+.+.|+|++|.++..+|+..|.
T Consensus       348 ~R~~~~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g-~~i~Kf~L~is~eeQ~~R~~~R~  426 (500)
T 3czp_A          348 WRFWRHIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYG-IIVVKFWLAIDKQTQMERFKERE  426 (500)
T ss_dssp             HHHHTTCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCC-CeEEEEEEECCHHHHHHHHHHHh
Confidence            2233344332 2355665321            22222       22333344444 46799999999999999999886


Q ss_pred             CC
Q 025529          166 IH  167 (251)
Q Consensus       166 ~~  167 (251)
                      .+
T Consensus       427 ~~  428 (500)
T 3czp_A          427 KT  428 (500)
T ss_dssp             HS
T ss_pred             cC
Confidence            43

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.95  E-value=0.00022  Score=54.72  Aligned_cols=112  Identities=21%  Similarity=0.147  Sum_probs=60.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCC--ch-HHHHHHHHHcCCCcCHHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKT--PL-GIKAKEAMDKGELVSDDLVVGIIDE  107 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~--~~-~~~i~~~l~~~~~~~~~~~~~ll~~  107 (251)
                      ++..++++     |++||||||+++.+..  +...++.+. ++..+.+..  .. .....           +........
T Consensus         8 ~gei~~l~-----G~nGsGKSTl~~~~~~--~~~~~~~d~-~~g~~~~~~~~~~~~~~~~-----------~~~~~~~~~   68 (171)
T 4gp7_A            8 ELSLVVLI-----GSSGSGKSTFAKKHFK--PTEVISSDF-CRGLMSDDENDQTVTGAAF-----------DVLHYIVSK   68 (171)
T ss_dssp             SSEEEEEE-----CCTTSCHHHHHHHHSC--GGGEEEHHH-HHHHHCSSTTCGGGHHHHH-----------HHHHHHHHH
T ss_pred             CCEEEEEE-----CCCCCCHHHHHHHHcc--CCeEEccHH-HHHHhcCcccchhhHHHHH-----------HHHHHHHHH
Confidence            56677888     9999999999998642  455555544 333333221  10 00000           011111112


Q ss_pred             HHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          108 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       108 ~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      .+.   .....++|..............+.......| .+++||-|...+-.|...|.
T Consensus        69 ~~~---~g~~~~~~~~~~~s~g~~qrv~iAral~~~p-~~lllDEPt~~Ld~~~~~R~  122 (171)
T 4gp7_A           69 RLQ---LGKLTVVDATNVQESARKPLIEMAKDYHCFP-VAVVFNLPEKVCQERNKNRT  122 (171)
T ss_dssp             HHH---TTCCEEEESCCCSHHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHTCS
T ss_pred             HHh---CCCeEEEECCCCCHHHHHHHHHHHHHcCCcE-EEEEEeCCHHHHHHHHhccc
Confidence            221   1234566765544433333333334444566 46679999999999988773

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.91  E-value=7.9e-06  Score=63.66  Aligned_cols=119  Identities=18%  Similarity=0.171  Sum_probs=62.1

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc--eechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID  106 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~--~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~  106 (251)
                      ..++..++++     |++||||||+++.|+..++..  +++.+++... .......+......      .+...+.+.+.
T Consensus         6 i~~g~~i~l~-----G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~-~~~~~~~~~~~~~~------~~~~~v~~~l~   73 (191)
T 1zp6_A            6 DLGGNILLLS-----GHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY-IKHGRIDPWLPQSH------QQNRMIMQIAA   73 (191)
T ss_dssp             CCTTEEEEEE-----ECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT-CCSSCCCTTSSSHH------HHHHHHHHHHH
T ss_pred             CCCCeEEEEE-----CCCCCCHHHHHHHHHhccCCCeEEEcccchhhh-hhcccccCCccchh------hhhHHHHHHHH
Confidence            3467788888     999999999999999987544  6777765432 11111000000000      00111111111


Q ss_pred             HHHcC-CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          107 EAMKK-PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       107 ~~l~~-~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ..... ......+++|+..... ....+.    ..+.. ...+++.++.++++.|+..|.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~-~l~~~~----~~~~~-~~~ls~~~~~~v~~~R~~~r~  127 (191)
T 1zp6_A           74 DVAGRYAKEGYFVILDGVVRPD-WLPAFT----ALARP-LHYIVLRTTAAEAIERCLDRG  127 (191)
T ss_dssp             HHHHHHHHTSCEEEECSCCCTT-TTHHHH----TTCSC-EEEEEEECCHHHHHHHHHTTC
T ss_pred             HHHHHHhccCCeEEEeccCcHH-HHHHHH----hcCCC-eEEEEecCCHHHHHHHHHhcC
Confidence            11000 0112346778754422 111111    11122 357899999999999998773

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.90  E-value=3.9e-06  Score=71.75  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=29.2

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM   71 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l   71 (251)
                      .|+|.     ||+||||||+|..|++.++..+|++|++
T Consensus         9 lI~I~-----GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            9 LIVIV-----GPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             EEEEE-----CSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             eEEEE-----CCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            56666     9999999999999999999888888765

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.86  E-value=6.7e-06  Score=69.79  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=30.5

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM   71 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l   71 (251)
                      +.|+|+     ||+||||||++..|+++++..++++|.+
T Consensus         6 ~~i~i~-----GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            6 PAIFLM-----GPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             EEEEEE-----CCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             cEEEEE-----CCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            467788     9999999999999999999999998764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.80  E-value=9.5e-06  Score=69.18  Aligned_cols=37  Identities=27%  Similarity=0.461  Sum_probs=32.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM   71 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l   71 (251)
                      ++++.|+|+     ||+||||||++..|+++++..+||+|.+
T Consensus        38 ~~~~lIvI~-----GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           38 RKEKLLVLM-----GATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CCCEEEEEE-----CSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             cCCceEEEE-----CCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            345678888     9999999999999999999999998865

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.80  E-value=2e-05  Score=62.56  Aligned_cols=50  Identities=24%  Similarity=0.291  Sum_probs=37.7

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhH
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGD   70 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~   70 (251)
                      ++.++++..+.....++..+.|.     ||+||||||+++.|+..+.     ...+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~g~~v~I~-----G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~   60 (208)
T 3c8u_A            6 ALCQGVLERLDPRQPGRQLVALS-----GAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG   60 (208)
T ss_dssp             HHHHHHHHHSCTTCCSCEEEEEE-----CCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEE-----CCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence            46666666665445577888888     9999999999999999874     45555543

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.73  E-value=1.2e-05  Score=68.94  Aligned_cols=46  Identities=24%  Similarity=0.277  Sum_probs=34.8

Q ss_pred             hhHHHHHHHHhhc--cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCce
Q 025529           15 VDLMTELLRRMKC--ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH   65 (251)
Q Consensus        15 ~~~~~~~~~~~~~--~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~   65 (251)
                      ..+.+.+...+..  .+...+.|+|+     |+|||||||+++.|++.+++++
T Consensus         5 ~~L~~~il~~l~~~i~~g~~~~i~l~-----G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A            5 HKLADDVLQLLDNRIEDNYRVCVILV-----GSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             HHHHHHHHHHHHHTTTTCSCEEEEEE-----CCTTSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCeeEEEEE-----CCCCCcHHHHHHHHHHHhCCCe
Confidence            3455556555532  23345678999     9999999999999999998877

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.70  E-value=2.6e-05  Score=70.23  Aligned_cols=51  Identities=8%  Similarity=0.008  Sum_probs=37.3

Q ss_pred             hhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC-------ceechhH
Q 025529           15 VDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL-------CHLATGD   70 (251)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~-------~~i~~~~   70 (251)
                      .++.+.+...|......++.|+|+     |.+||||||+++.|+++++.       .+++.|.
T Consensus       378 peV~~vLr~~~~~~~~~~~~I~l~-----GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          378 PEVVKILRESNPPRPKQGFSIVLG-----NSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             HHHHHHHHHHSCCGGGCCEEEEEC-----TTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             hhhHHHHHHhcccccccceEEEec-----ccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            345555555553233456778888     99999999999999999986       5666654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.66  E-value=3e-05  Score=65.25  Aligned_cols=36  Identities=19%  Similarity=0.299  Sum_probs=31.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD   70 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~   70 (251)
                      ..+..|+|.     ||+||||||++..|+++++..+++.|.
T Consensus         8 ~~~~~i~i~-----GptgsGKt~la~~La~~~~~~iis~Ds   43 (316)
T 3foz_A            8 SLPKAIFLM-----GPTASGKTALAIELRKILPVELISVDS   43 (316)
T ss_dssp             CCCEEEEEE-----CCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred             CCCcEEEEE-----CCCccCHHHHHHHHHHhCCCcEEeccc
Confidence            345677888     999999999999999999988888764

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=97.65  E-value=0.00057  Score=56.58  Aligned_cols=164  Identities=15%  Similarity=0.074  Sum_probs=90.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDE  107 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~  107 (251)
                      .+..|+|.     |..||||+++.+.|.+.++   +.+++...          |..              .+.....+..
T Consensus        74 ~~vlIvfE-----G~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~----------Pt~--------------eE~~~~ylwR  124 (289)
T 3rhf_A           74 KRLLLILQ-----AMDTAGKGGIVSHVVGAMDPQGVQLTAFKA----------PTD--------------EEKSHDFLWR  124 (289)
T ss_dssp             CEEEEEEE-----ECTTSSHHHHHHHHHHHSCGGGEEEEECCS----------CCH--------------HHHTSCTTHH
T ss_pred             CcEEEEEE-----CCCCCChHHHHHHHHHhcCcCceEEEECCC----------CCh--------------hhhcCCHHHH
Confidence            68889999     9999999999999999984   33333311          000              0000111112


Q ss_pred             HHcCCCCC-CceEEeCC------------CCC-------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCC
Q 025529          108 AMKKPSCQ-KGFILDGF------------PRT-------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH  167 (251)
Q Consensus       108 ~l~~~~~~-~~~Iidg~------------~~~-------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~  167 (251)
                      ....++.. .-.|+|+.            ..+       ..+...|+..+...|. ..+-++|++|.++..+|+..|..+
T Consensus       125 ~~~~lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~-~ilKf~LhIskeEQ~kR~~~R~~d  203 (289)
T 3rhf_A          125 IEKQVPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGT-TIVKVMLNISKDEQKKRLIARLDD  203 (289)
T ss_dssp             HHTTCCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTE-EEEEEEEECCHHHHHHHHHHHHHC
T ss_pred             HHHhCCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCC-EEEEEEEECCHHHHHHHHHHHhcC
Confidence            22233322 23445542            111       2223345555555554 346789999999999999988532


Q ss_pred             CCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHH--HHHHHHHhccHHHHHHHhh-CCcEEEEcCCCChhH---H
Q 025529          168 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLK--SRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQE---V  241 (251)
Q Consensus       168 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~--~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~~ee---v  241 (251)
                      +.                          ++=..++..++  ++...|......++..-+. ...|++|+++..--.   +
T Consensus       204 P~--------------------------k~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v  257 (289)
T 3rhf_A          204 PS--------------------------KHWKYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAV  257 (289)
T ss_dssp             GG--------------------------GGGGCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHH
T ss_pred             Cc--------------------------ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHH
Confidence            21                          11122333333  3446666666665555432 246999999754333   4


Q ss_pred             HHHHHHHhc
Q 025529          242 TSEVQKALS  250 (251)
Q Consensus       242 ~~~i~~~l~  250 (251)
                      .+.|.+.|+
T Consensus       258 ~~~ll~~Le  266 (289)
T 3rhf_A          258 QQLLLDALG  266 (289)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            455555553

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.61  E-value=2.6e-05  Score=65.78  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=29.8

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM   71 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l   71 (251)
                      ++.|+|.     ||+||||||++..|+++++..+|++|.+
T Consensus         3 ~~~i~i~-----GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIV-----GPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CEEEEEE-----CCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CcEEEEE-----CCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            3456777     9999999999999999999888887754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.60  E-value=3.9e-05  Score=64.35  Aligned_cols=35  Identities=20%  Similarity=0.205  Sum_probs=29.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      +.|..+++.     ||||+|||++|+.+++.++.+++.++
T Consensus        34 ~~p~~lLl~-----GppGtGKT~la~aiA~~l~~~~i~v~   68 (293)
T 3t15_A           34 KVPLILGIW-----GGKGQGKSFQCELVFRKMGINPIMMS   68 (293)
T ss_dssp             CCCSEEEEE-----ECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred             CCCeEEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            456677888     99999999999999999987766553

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.60  E-value=5.8e-05  Score=65.87  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=29.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .+|.-+++.     ||||+|||.+|+.+|..++.+++.+
T Consensus       180 ~~prGvLL~-----GPPGTGKTllAkAiA~e~~~~f~~v  213 (405)
T 4b4t_J          180 AQPKGVILY-----GPPGTGKTLLARAVAHHTDCKFIRV  213 (405)
T ss_dssp             CCCCCEEEE-----SCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCceEEe-----CCCCCCHHHHHHHHHHhhCCCceEE
Confidence            355669999     9999999999999999999888765

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.55  E-value=5.1e-05  Score=66.99  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=30.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .+|.-+++.     ||||+|||.+|+.+|..++.+++.+
T Consensus       213 ~~prGvLLy-----GPPGTGKTllAkAiA~e~~~~f~~v  246 (434)
T 4b4t_M          213 RAPKGALMY-----GPPGTGKTLLARACAAQTNATFLKL  246 (434)
T ss_dssp             CCCCEEEEE-----SCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCeeEEE-----CcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            456679999     9999999999999999999887765

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.53  E-value=5.8e-05  Score=66.53  Aligned_cols=34  Identities=24%  Similarity=0.518  Sum_probs=29.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .+|.-+++.     ||||+|||++|+.+|..++.+++.+
T Consensus       204 ~~prGiLL~-----GPPGtGKT~lakAiA~~~~~~~~~v  237 (428)
T 4b4t_K          204 DPPRGVLLY-----GPPGTGKTMLVKAVANSTKAAFIRV  237 (428)
T ss_dssp             CCCCEEEEE-----SCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCceEEEE-----CCCCCCHHHHHHHHHHHhCCCeEEE
Confidence            455668999     9999999999999999999887765

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.52  E-value=5.9e-05  Score=66.62  Aligned_cols=34  Identities=29%  Similarity=0.531  Sum_probs=30.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .+|.-+++.     ||||+|||++|+.+|..++.+++.+
T Consensus       213 ~~prGvLL~-----GPPGtGKTllAkAiA~e~~~~~~~v  246 (437)
T 4b4t_L          213 KPPKGVLLY-----GPPGTGKTLLAKAVAATIGANFIFS  246 (437)
T ss_dssp             CCCCEEEEE-----SCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCeEEEE-----CCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            456679999     9999999999999999999887765

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.51  E-value=9.8e-05  Score=56.95  Aligned_cols=39  Identities=23%  Similarity=0.305  Sum_probs=29.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh----C--CceechhHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY----C--LCHLATGDMLRA   74 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~----~--~~~i~~~~li~~   74 (251)
                      ++..+++.     ||+|+||||+++.++..+    |  +.+++..+++..
T Consensus        37 ~g~~~~l~-----G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~   81 (180)
T 3ec2_A           37 EGKGLTFV-----GSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR   81 (180)
T ss_dssp             GCCEEEEC-----CSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            45678888     999999999999998876    4  345666665443

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.49  E-value=0.00012  Score=63.08  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=29.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      .+..++|.     ||||+|||++|+.|++.++.+++.++
T Consensus        50 ~~~~vll~-----GppGtGKT~la~~ia~~~~~~~~~~~   83 (363)
T 3hws_A           50 GKSNILLI-----GPTGSGKTLLAETLARLLDVPFTMAD   83 (363)
T ss_dssp             CCCCEEEE-----CCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEE-----CCCCCCHHHHHHHHHHHcCCCEEEec
Confidence            45678999     99999999999999999998877654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.48  E-value=7.9e-05  Score=57.67  Aligned_cols=29  Identities=24%  Similarity=0.343  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      |.++..++|+     ||+||||||+++.|...+.
T Consensus         2 ~~~g~~i~i~-----GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            2 SHMRKTLVLL-----GAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             -CCCCEEEEE-----CCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCEEEEE-----CCCCCCHHHHHHHHHhhCC
Confidence            3456678888     9999999999999998763

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.44  E-value=0.00011  Score=60.86  Aligned_cols=30  Identities=30%  Similarity=0.572  Sum_probs=25.4

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      -++++     |||||||||+++.|+..++..++.+
T Consensus        46 GvlL~-----Gp~GtGKTtLakala~~~~~~~i~i   75 (274)
T 2x8a_A           46 GVLLA-----GPPGCGKTLLAKAVANESGLNFISV   75 (274)
T ss_dssp             EEEEE-----SSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             eEEEE-----CCCCCcHHHHHHHHHHHcCCCEEEE
Confidence            38888     9999999999999999987655543

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.39  E-value=9e-05  Score=65.65  Aligned_cols=34  Identities=26%  Similarity=0.524  Sum_probs=30.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .+|.-+++.     ||||+|||++|+.+|.+++.+++.+
T Consensus       241 ~pprGILLy-----GPPGTGKTlLAkAiA~e~~~~fi~v  274 (467)
T 4b4t_H          241 DPPKGILLY-----GPPGTGKTLCARAVANRTDATFIRV  274 (467)
T ss_dssp             CCCSEEEEC-----SCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCceEee-----CCCCCcHHHHHHHHHhccCCCeEEE
Confidence            456678899     9999999999999999999887765

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.39  E-value=0.00023  Score=59.58  Aligned_cols=30  Identities=30%  Similarity=0.352  Sum_probs=25.5

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .+.++..|.|.     |++||||||+++.|+..++
T Consensus        27 ~~~~~~ii~I~-----G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           27 GNKCPLFIFFS-----GPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             TCCSCEEEEEE-----CCTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhh
Confidence            34567778888     9999999999999999884

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.38  E-value=0.00013  Score=59.60  Aligned_cols=32  Identities=28%  Similarity=0.525  Sum_probs=27.4

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      +..++|.     ||||+||||+++.++..++.+++.+
T Consensus        45 ~~~vll~-----G~~GtGKT~la~~la~~~~~~~~~i   76 (257)
T 1lv7_A           45 PKGVLMV-----GPPGTGKTLLAKAIAGEAKVPFFTI   76 (257)
T ss_dssp             CCEEEEE-----CCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEE-----CcCCCCHHHHHHHHHHHcCCCEEEE
Confidence            4568888     9999999999999999998766554

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.38  E-value=0.00019  Score=53.40  Aligned_cols=41  Identities=24%  Similarity=0.401  Sum_probs=29.8

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..++++..........+..++|.     |+||+|||++|+.++...
T Consensus         8 ~~~~~~~~~~~~~a~~~~~vll~-----G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A            8 EWINQYRRRLQQLSETDIAVWLY-----GAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             HHHHHHHHHHHHHTTCCSCEEEE-----SSTTSSHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEE-----CCCCCCHHHHHHHHHHhC
Confidence            44555555554333444568899     999999999999999875

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.00011  Score=64.38  Aligned_cols=34  Identities=32%  Similarity=0.543  Sum_probs=30.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .+|.-+++.     ||||+|||.+|+.+|..++.+++.+
T Consensus       214 ~~prGvLLy-----GPPGTGKTlLAkAiA~e~~~~fi~v  247 (437)
T 4b4t_I          214 KPPKGVILY-----GAPGTGKTLLAKAVANQTSATFLRI  247 (437)
T ss_dssp             CCCSEEEEE-----SSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCCceE-----CCCCchHHHHHHHHHHHhCCCEEEE
Confidence            456679999     9999999999999999999887765

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.37  E-value=0.00013  Score=59.43  Aligned_cols=34  Identities=35%  Similarity=0.505  Sum_probs=28.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ..+..++|.     ||||+|||++++.+++.++.+++.+
T Consensus        37 ~~~~~vll~-----G~~GtGKT~la~~la~~~~~~~~~~   70 (262)
T 2qz4_A           37 KVPKGALLL-----GPPGCGKTLLAKAVATEAQVPFLAM   70 (262)
T ss_dssp             CCCCEEEEE-----SCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCceEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            345568888     9999999999999999998776654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.37  E-value=9.1e-05  Score=64.58  Aligned_cols=33  Identities=18%  Similarity=0.313  Sum_probs=28.6

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD   70 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~   70 (251)
                      +.|+|.     ||+||||||++..|++.++..+|++|.
T Consensus         3 ~~i~i~-----GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            3 KVIVIA-----GTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             EEEEEE-----ECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             cEEEEE-----CcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            456666     999999999999999999988888765

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.36  E-value=7.7e-05  Score=61.29  Aligned_cols=32  Identities=28%  Similarity=0.549  Sum_probs=26.8

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      +..++|.     ||||+|||++++.+++.++.+++.+
T Consensus        44 ~~~vll~-----G~~GtGKT~la~~la~~~~~~~~~v   75 (268)
T 2r62_A           44 PKGVLLV-----GPPGTGKTLLAKAVAGEAHVPFFSM   75 (268)
T ss_dssp             CSCCCCB-----CSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred             CceEEEE-----CCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            3447777     9999999999999999998776654

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.33  E-value=0.00012  Score=64.67  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=30.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ++..++++     ||||+||||+++.|++.++.+++.++
T Consensus        49 ~~~~iLl~-----GppGtGKT~lar~lA~~l~~~~~~v~   82 (444)
T 1g41_A           49 TPKNILMI-----GPTGVGKTEIARRLAKLANAPFIKVE   82 (444)
T ss_dssp             CCCCEEEE-----CCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCceEEEE-----cCCCCCHHHHHHHHHHHcCCCceeec
Confidence            45679999     99999999999999999998887665

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.32  E-value=0.00025  Score=58.67  Aligned_cols=34  Identities=29%  Similarity=0.565  Sum_probs=29.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ..+..++|.     ||||+|||++++.+++.++.+++.+
T Consensus        49 ~~~~~~ll~-----G~~GtGKT~la~~la~~~~~~~~~v   82 (285)
T 3h4m_A           49 EPPKGILLY-----GPPGTGKTLLAKAVATETNATFIRV   82 (285)
T ss_dssp             CCCSEEEEE-----SSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCeEEEE-----CCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            456678999     9999999999999999998776654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.30  E-value=0.00016  Score=60.78  Aligned_cols=40  Identities=28%  Similarity=0.534  Sum_probs=31.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech--hHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRA   74 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~--~~li~~   74 (251)
                      .++..++|.     ||||+||||+++.++..++.+++.+  .++...
T Consensus        47 ~~~~~vLL~-----Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~   88 (301)
T 3cf0_A           47 TPSKGVLFY-----GPPGCGKTLLAKAIANECQANFISIKGPELLTM   88 (301)
T ss_dssp             CCCSEEEEE-----CSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred             CCCceEEEE-----CCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence            456678899     9999999999999999998776654  355443

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.29  E-value=0.00032  Score=59.39  Aligned_cols=34  Identities=26%  Similarity=0.540  Sum_probs=29.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ++..++|.     ||||+|||++++.+++.++.+++.+.
T Consensus        50 ~~~~vLl~-----GppGtGKT~la~aia~~~~~~~~~v~   83 (322)
T 3eie_A           50 PTSGILLY-----GPPGTGKSYLAKAVATEANSTFFSVS   83 (322)
T ss_dssp             CCCEEEEE-----CSSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCeEEEE-----CCCCCcHHHHHHHHHHHHCCCEEEEc
Confidence            45678999     99999999999999999987766553

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.29  E-value=0.00017  Score=60.16  Aligned_cols=33  Identities=36%  Similarity=0.637  Sum_probs=28.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ++..++|.     ||||+||||+++.+++.++.+++.+
T Consensus        53 ~~~~vll~-----Gp~GtGKT~la~~la~~~~~~~~~i   85 (297)
T 3b9p_A           53 PAKGLLLF-----GPPGNGKTLLARAVATECSATFLNI   85 (297)
T ss_dssp             CCSEEEEE-----SSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCeEEEE-----CcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            45678899     9999999999999999998766544

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.27  E-value=0.0004  Score=53.17  Aligned_cols=40  Identities=18%  Similarity=0.332  Sum_probs=29.6

Q ss_pred             hhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           15 VDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++.++++...+..  ..+..++|.     |++|+||||+++.+++.+
T Consensus        28 ~~~~~~l~~~l~~--~~~~~~ll~-----G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           28 DEEIRRTIQVLQR--RTKNNPVLI-----GEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             HHHHHHHHHHHTS--SSSCEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhc--CCCCceEEE-----CCCCCCHHHHHHHHHHHH
Confidence            3445555555443  345568888     999999999999999986

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.25  E-value=0.00034  Score=62.24  Aligned_cols=35  Identities=26%  Similarity=0.421  Sum_probs=29.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC--Cceechh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLATG   69 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~~   69 (251)
                      .++..++|.     ||||+|||++|+.+++.++  ++++.++
T Consensus        61 ~~~~~iLl~-----GppGtGKT~la~ala~~l~~~~~~~~~~   97 (456)
T 2c9o_A           61 MAGRAVLLA-----GPPGTGKTALALAIAQELGSKVPFCPMV   97 (456)
T ss_dssp             CTTCEEEEE-----CCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred             CCCCeEEEE-----CCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence            355679999     9999999999999999998  6666543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.24  E-value=0.00018  Score=55.70  Aligned_cols=27  Identities=30%  Similarity=0.428  Sum_probs=22.7

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      |+++|+     ||+||||||+.+.|+..+++.
T Consensus         1 ~~i~l~-----G~nGsGKTTLl~~l~g~l~i~   27 (178)
T 1ye8_A            1 MKIIIT-----GEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEE-----CCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHhCCc
Confidence            356677     999999999999999988643

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.24  E-value=0.00026  Score=59.05  Aligned_cols=33  Identities=21%  Similarity=0.343  Sum_probs=28.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .+..++|.     ||||+|||++++.+++.++.+++.+
T Consensus        49 ~~~~vll~-----G~~GtGKT~la~~la~~l~~~~~~i   81 (310)
T 1ofh_A           49 TPKNILMI-----GPTGVGKTEIARRLAKLANAPFIKV   81 (310)
T ss_dssp             CCCCEEEE-----CCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCceEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            45678899     9999999999999999998766543

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.21  E-value=0.00047  Score=59.79  Aligned_cols=35  Identities=20%  Similarity=0.173  Sum_probs=29.1

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA   67 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~   67 (251)
                      .-.++..+++.     ||+||||||+++.|+..++..++.
T Consensus       165 ~i~~~~~i~l~-----G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          165 NIPKKRYWLFK-----GPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             CCTTCCEEEEE-----CSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             ccCCCCEEEEE-----CCCCCCHHHHHHHHHhhcCCcEEE
Confidence            44567788999     999999999999999988765554

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.20  E-value=0.00024  Score=58.49  Aligned_cols=35  Identities=29%  Similarity=0.419  Sum_probs=29.7

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ...+..++|.     ||||+|||++|+.+++..+.+++.+
T Consensus        61 ~~~~~~vLl~-----G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           61 RTPLVSVLLE-----GPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             SCSEEEEEEE-----CSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCCeEEEEE-----CCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            3456678888     9999999999999999998876654

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.20  E-value=0.00037  Score=59.97  Aligned_cols=34  Identities=29%  Similarity=0.543  Sum_probs=29.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ..+..++|.     ||||+|||++++.+++.++.+++.+
T Consensus       115 ~~~~~vLl~-----GppGtGKT~la~aia~~~~~~~~~i  148 (357)
T 3d8b_A          115 GPPKGILLF-----GPPGTGKTLIGKCIASQSGATFFSI  148 (357)
T ss_dssp             SCCSEEEEE-----SSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCceEEEE-----CCCCCCHHHHHHHHHHHcCCeEEEE
Confidence            356678899     9999999999999999998776644

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.19  E-value=0.00029  Score=55.53  Aligned_cols=29  Identities=24%  Similarity=0.370  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      +-++..++|.     ||+||||||+++.|.+.+.
T Consensus        16 ~~~g~~ivl~-----GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           16 FQGRKTLVLI-----GASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CCSCCEEEEE-----CCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCEEEEE-----CcCCCCHHHHHHHHHhhCC
Confidence            3466678888     9999999999999998875

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.19  E-value=0.00039  Score=53.15  Aligned_cols=38  Identities=18%  Similarity=0.298  Sum_probs=28.1

Q ss_pred             HHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           17 LMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++.+...+..  ..+..++|.     |++|+||||+++.+++.+
T Consensus        30 ~~~~l~~~l~~--~~~~~vll~-----G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           30 EIRRAIQILSR--RTKNNPILL-----GDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             HHHHHHHHHTS--SSSCEEEEE-----SCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CCCCceEEE-----CCCCCCHHHHHHHHHHHH
Confidence            44444444432  345567888     999999999999999987

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.18  E-value=0.00023  Score=56.06  Aligned_cols=34  Identities=15%  Similarity=0.167  Sum_probs=28.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD   70 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~   70 (251)
                      .+..++|.     ||+||||||++..|+++.+ .+++.|.
T Consensus        33 ~g~~ilI~-----GpsGsGKStLA~~La~~g~-~iIsdDs   66 (205)
T 2qmh_A           33 YGLGVLIT-----GDSGVGKSETALELVQRGH-RLIADDR   66 (205)
T ss_dssp             TTEEEEEE-----CCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred             CCEEEEEE-----CCCCCCHHHHHHHHHHhCC-eEEecch
Confidence            45668888     9999999999999999866 7777764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.15  E-value=0.00039  Score=56.62  Aligned_cols=31  Identities=29%  Similarity=0.561  Sum_probs=25.8

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ..++|+     ||||+||||+++.++..++..++.+
T Consensus        50 ~g~ll~-----G~~G~GKTtl~~~i~~~~~~~~i~~   80 (254)
T 1ixz_A           50 KGVLLV-----GPPGVGKTHLARAVAGEARVPFITA   80 (254)
T ss_dssp             SEEEEE-----CCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            348888     9999999999999999887655544

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.14  E-value=0.00047  Score=58.47  Aligned_cols=49  Identities=22%  Similarity=0.250  Sum_probs=34.6

Q ss_pred             hHHHHHHHHhhc---cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           16 DLMTELLRRMKC---ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        16 ~~~~~~~~~~~~---~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ++++.+...+..   ....+..++|.     |+||+|||++++.+++.++.+++.+.
T Consensus        36 ~~~~~l~~~l~~~~~~~~~~~~vll~-----G~~GtGKT~la~~ia~~~~~~~~~~~   87 (338)
T 3pfi_A           36 SIKKNLNVFIAAAKKRNECLDHILFS-----GPAGLGKTTLANIISYEMSANIKTTA   87 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCCEEEE-----CSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCCCeEEEE-----CcCCCCHHHHHHHHHHHhCCCeEEec
Confidence            444444444432   13445568888     99999999999999999987766553

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.14  E-value=0.00028  Score=60.98  Aligned_cols=34  Identities=24%  Similarity=0.412  Sum_probs=29.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      .+..++|.     ||||+|||++|+.|++.++.+++.++
T Consensus        71 ~~~~ill~-----Gp~GtGKT~la~~la~~l~~~~~~~~  104 (376)
T 1um8_A           71 SKSNILLI-----GPTGSGKTLMAQTLAKHLDIPIAISD  104 (376)
T ss_dssp             CCCCEEEE-----CCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEec
Confidence            45568999     99999999999999999987776553

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.13  E-value=0.00049  Score=51.63  Aligned_cols=26  Identities=15%  Similarity=0.176  Sum_probs=23.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..++|+     |++||||||+++.++..+
T Consensus        35 ~g~~~~l~-----G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVW-----GEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEE-----SSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            56678888     999999999999999877

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.12  E-value=0.00032  Score=59.54  Aligned_cols=32  Identities=28%  Similarity=0.560  Sum_probs=26.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh-CCceec
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-CLCHLA   67 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-~~~~i~   67 (251)
                      ++..++|.     ||||+|||++++.++..+ +.+++.
T Consensus        44 ~~~~iLL~-----GppGtGKT~la~ala~~~~~~~~~~   76 (322)
T 1xwi_A           44 PWRGILLF-----GPPGTGKSYLAKAVATEANNSTFFS   76 (322)
T ss_dssp             CCSEEEEE-----SSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred             CCceEEEE-----CCCCccHHHHHHHHHHHcCCCcEEE
Confidence            45678899     999999999999999998 655544

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.10  E-value=0.00047  Score=57.67  Aligned_cols=28  Identities=25%  Similarity=0.430  Sum_probs=24.4

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +..+..++|.     ||||+|||++++.+++.+
T Consensus        64 ~~~~~~vll~-----G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           64 ETPTLHMSFT-----GNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             SCCCCEEEEE-----ECTTSSHHHHHHHHHHHH
T ss_pred             CCCCceEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            3455679999     999999999999999988

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.08  E-value=0.0003  Score=55.30  Aligned_cols=26  Identities=31%  Similarity=0.475  Sum_probs=21.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..++|+     ||+||||||+.+.|...+
T Consensus         3 ~g~~i~lv-----GpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLS-----GPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHHhhC
Confidence            34567888     999999999999998865

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.08  E-value=0.00033  Score=60.30  Aligned_cols=34  Identities=26%  Similarity=0.540  Sum_probs=29.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ++..++|.     ||||+|||++|+.+++.++.+++.++
T Consensus        83 ~~~~iLL~-----GppGtGKT~la~ala~~~~~~~~~v~  116 (355)
T 2qp9_X           83 PTSGILLY-----GPPGTGKSYLAKAVATEANSTFFSVS  116 (355)
T ss_dssp             CCCCEEEE-----CSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCceEEEE-----CCCCCcHHHHHHHHHHHhCCCEEEee
Confidence            34568899     99999999999999999998776553

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.05  E-value=0.00013  Score=54.23  Aligned_cols=48  Identities=19%  Similarity=0.214  Sum_probs=31.9

Q ss_pred             hhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           15 VDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      +..++++..........+..++|.     |+||+|||++|+.++...+ +++.+
T Consensus        10 s~~~~~l~~~~~~~~~~~~~vll~-----G~~GtGKt~lA~~i~~~~~-~~~~~   57 (143)
T 3co5_A           10 SAAIQEMNREVEAAAKRTSPVFLT-----GEAGSPFETVARYFHKNGT-PWVSP   57 (143)
T ss_dssp             CHHHHHHHHHHHHHHTCSSCEEEE-----EETTCCHHHHHGGGCCTTS-CEECC
T ss_pred             CHHHHHHHHHHHHHhCCCCcEEEE-----CCCCccHHHHHHHHHHhCC-CeEEe
Confidence            344554554443322334458889     9999999999999988776 44433

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.02  E-value=0.00077  Score=57.37  Aligned_cols=30  Identities=37%  Similarity=0.479  Sum_probs=25.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCce
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH   65 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~   65 (251)
                      .+..++|+     ||||+||||+++.++..++..+
T Consensus        50 ~~~~~ll~-----Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           50 VLDHVLLA-----GPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             CCCCEEEE-----SSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCCeEEEE-----CCCCCcHHHHHHHHHHHhCCCE
Confidence            34568888     9999999999999999987643

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.01  E-value=0.0012  Score=55.81  Aligned_cols=47  Identities=13%  Similarity=0.110  Sum_probs=32.6

Q ss_pred             HHHHhhccCC-CCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCc--eechhHHH
Q 025529           21 LLRRMKCASK-PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLC--HLATGDML   72 (251)
Q Consensus        21 ~~~~~~~~~~-~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~--~i~~~~li   72 (251)
                      .+..+...+. .+..++|.     ||||+||||+++.++..+   +..  +++..++.
T Consensus        25 ~~~~~~~~~~~~~~~lll~-----G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~   77 (324)
T 1l8q_A           25 VVKEALENLGSLYNPIFIY-----GSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA   77 (324)
T ss_dssp             HHHHHHHTTTTSCSSEEEE-----CSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             HHHHHHhCcCCCCCeEEEE-----CCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence            3444443443 45568899     999999999999999987   544  45555543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.00  E-value=0.0019  Score=50.48  Aligned_cols=36  Identities=28%  Similarity=0.337  Sum_probs=27.9

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh---CCc--eechhHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLC--HLATGDMLR   73 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~--~i~~~~li~   73 (251)
                      ..++|.     |++|+||||+++.++..+   +..  +++..+++.
T Consensus        55 ~~~~l~-----G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~   95 (202)
T 2w58_A           55 KGLYLH-----GSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR   95 (202)
T ss_dssp             CEEEEE-----CSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred             CeEEEE-----CCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence            678889     999999999999999877   333  356655543

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.98  E-value=0.00073  Score=53.44  Aligned_cols=30  Identities=17%  Similarity=0.164  Sum_probs=24.7

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL   66 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i   66 (251)
                      ...++|.     ||||+||||+|..|++.++-..+
T Consensus        58 kn~ili~-----GPPGtGKTt~a~ala~~l~g~i~   87 (212)
T 1tue_A           58 KNCLVFC-----GPANTGKSYFGMSFIHFIQGAVI   87 (212)
T ss_dssp             CSEEEEE-----SCGGGCHHHHHHHHHHHHTCEEC
T ss_pred             ccEEEEE-----CCCCCCHHHHHHHHHHHhCCCee
Confidence            3468999     99999999999999998754443

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.98  E-value=0.00074  Score=55.81  Aligned_cols=30  Identities=27%  Similarity=0.544  Sum_probs=25.4

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .++|+     ||+||||||+++.|+..++..++.+
T Consensus        75 gvll~-----Gp~GtGKTtl~~~i~~~~~~~~i~~  104 (278)
T 1iy2_A           75 GVLLV-----GPPGVGKTHLARAVAGEARVPFITA  104 (278)
T ss_dssp             EEEEE-----CCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEE-----CCCcChHHHHHHHHHHHcCCCEEEe
Confidence            48888     9999999999999999887655544

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.97  E-value=0.00023  Score=55.23  Aligned_cols=24  Identities=17%  Similarity=0.302  Sum_probs=20.0

Q ss_pred             ecccCCCCCChhHHHHHHHHHhCCc
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      +.|+|++||||||+|..|+.. +.+
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~   25 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQ   25 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCC
Confidence            445599999999999999987 654

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.95  E-value=0.00096  Score=57.97  Aligned_cols=33  Identities=30%  Similarity=0.585  Sum_probs=29.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .+..++|.     ||||+|||++++.++..++.+++.+
T Consensus       147 ~~~~vLL~-----GppGtGKT~la~aia~~~~~~~~~v  179 (389)
T 3vfd_A          147 PARGLLLF-----GPPGNGKTMLAKAVAAESNATFFNI  179 (389)
T ss_dssp             CCSEEEEE-----SSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CCceEEEE-----CCCCCCHHHHHHHHHHhhcCcEEEe
Confidence            45678999     9999999999999999998877655

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.91  E-value=0.00047  Score=65.32  Aligned_cols=35  Identities=29%  Similarity=0.559  Sum_probs=30.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      .+|.-+++.     ||||+|||++++.+|..+|.+++.++
T Consensus       236 ~~p~GILL~-----GPPGTGKT~LAraiA~elg~~~~~v~  270 (806)
T 3cf2_A          236 KPPRGILLY-----GPPGTGKTLIARAVANETGAFFFLIN  270 (806)
T ss_dssp             CCCCEEEEE-----CCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCCeEEEE-----CCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence            456779999     99999999999999999998877664

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.90  E-value=0.00044  Score=53.08  Aligned_cols=24  Identities=21%  Similarity=0.064  Sum_probs=20.2

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +.+.|.     |++||||||++..|...+
T Consensus         5 ~~i~i~-----G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            5 NVWQVV-----GYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEE-----CCCCCCHHHHHHHHHHhh
Confidence            346666     999999999999998876

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.88  E-value=0.0007  Score=60.50  Aligned_cols=33  Identities=27%  Similarity=0.491  Sum_probs=28.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .|..++|.     ||||+||||+++.++...+.+++.+
T Consensus        48 ~p~gvLL~-----GppGtGKT~Laraia~~~~~~f~~i   80 (476)
T 2ce7_A           48 MPKGILLV-----GPPGTGKTLLARAVAGEANVPFFHI   80 (476)
T ss_dssp             CCSEEEEE-----CCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCeEEEE-----CCCCCCHHHHHHHHHHHcCCCeeeC
Confidence            34558889     9999999999999999999877655

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.88  E-value=0.0011  Score=55.89  Aligned_cols=28  Identities=14%  Similarity=0.147  Sum_probs=24.4

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..++..+.|.     |++||||||+++.|+..+
T Consensus        87 ~~~g~ivgI~-----G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVA-----GSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEE-----CCCCchHHHHHHHHHhhc
Confidence            4567778888     999999999999999876

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.86  E-value=0.0018  Score=51.49  Aligned_cols=27  Identities=19%  Similarity=0.117  Sum_probs=23.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .+..++|.     ||||+||||+++.+++.++
T Consensus        51 ~~~~~ll~-----G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLW-----GPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEE-----CSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEE-----CCCCCCHHHHHHHHHHHHH
Confidence            55678899     9999999999999998763

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.84  E-value=0.00068  Score=54.12  Aligned_cols=27  Identities=33%  Similarity=0.575  Sum_probs=23.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..++|+     ||+||||||+.+.|+..+
T Consensus        21 ~~G~~~~lv-----GpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           21 NNIYPLVIC-----GPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -CCCCEEEE-----CSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHHhhC
Confidence            456678889     999999999999999876

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.82  E-value=0.0017  Score=50.84  Aligned_cols=39  Identities=21%  Similarity=0.439  Sum_probs=27.3

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +.++.+...+.. + ++..++|.     |++|+|||++++.+++.+
T Consensus        24 ~~~~~l~~~l~~-~-~~~~~ll~-----G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           24 EVIQRLKGYVER-K-NIPHLLFS-----GPPGTGKTATAIALARDL   62 (226)
T ss_dssp             HHHHHHHHHHHT-T-CCCCEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-C-CCCeEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            444444444432 2 22348888     999999999999999876

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=96.80  E-value=0.012  Score=49.21  Aligned_cols=24  Identities=21%  Similarity=0.418  Sum_probs=19.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .+..|+|+     ||   ||+|+.+.|.+.+.
T Consensus       104 ~~r~ivl~-----GP---gK~tl~~~L~~~~~  127 (295)
T 1kjw_A          104 YARPIIIL-----GP---TKDRANDDLLSEFP  127 (295)
T ss_dssp             SCCCEEEE-----ST---THHHHHHHHHHHCT
T ss_pred             CCCEEEEE-----CC---CHHHHHHHHHhhCc
Confidence            44557888     98   79999999998763

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.79  E-value=0.00083  Score=59.54  Aligned_cols=39  Identities=26%  Similarity=0.550  Sum_probs=27.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh-CCcee--chhHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-CLCHL--ATGDMLRA   74 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-~~~~i--~~~~li~~   74 (251)
                      ++..++|.     ||||+|||++++.++..+ +.+++  +..+++..
T Consensus       166 ~~~~vLL~-----GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~  207 (444)
T 2zan_A          166 PWRGILLF-----GPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK  207 (444)
T ss_dssp             CCSEEEEE-----CSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred             CCceEEEE-----CCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence            45678999     999999999999999998 66554  44455443

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.77  E-value=0.0016  Score=54.78  Aligned_cols=48  Identities=13%  Similarity=0.044  Sum_probs=32.3

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ++.+.+...+. ....+..+++.     ||||+|||++++.+++.++..++..+
T Consensus        33 ~~~~~l~~~l~-~~~~~~~~L~~-----G~~G~GKT~la~~la~~l~~~~~~i~   80 (324)
T 3u61_B           33 FDKETFKSITS-KGKIPHIILHS-----PSPGTGKTTVAKALCHDVNADMMFVN   80 (324)
T ss_dssp             HHHHHHHHHHH-TTCCCSEEEEC-----SSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHHH-cCCCCeEEEee-----CcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence            44444444333 33344455666     77999999999999999987766553

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.77  E-value=0.0014  Score=51.98  Aligned_cols=41  Identities=15%  Similarity=0.312  Sum_probs=28.8

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      ...+.+...+. .+..+..++|.     |++|+||||+++.+++.++
T Consensus        30 ~~~~~l~~~l~-~~~~~~~~ll~-----G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           30 HVLTALANGLS-LGRIHHAYLFS-----GTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             HHHHHHHHHHH-HTCCCSEEEEE-----CSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-cCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhc
Confidence            34444444433 23334568888     9999999999999999874

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.77  E-value=0.0019  Score=48.90  Aligned_cols=29  Identities=21%  Similarity=0.189  Sum_probs=25.4

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .-.++..+.++     ||.||||||+.+.|+..+
T Consensus        29 ~i~~Ge~v~L~-----G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           29 HTEKAIMVYLN-----GDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CCSSCEEEEEE-----CSTTSSHHHHHHHHHHHT
T ss_pred             ccCCCCEEEEE-----CCCCCCHHHHHHHHHHhC
Confidence            34677789999     999999999999999876

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.76  E-value=0.00098  Score=52.57  Aligned_cols=28  Identities=21%  Similarity=0.392  Sum_probs=23.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .++..++|+     ||+||||||+.+.|+..+.
T Consensus        18 ~~Gei~~l~-----GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           18 AVGRVVVLS-----GPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -CCCEEEEE-----CSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHHhhCC
Confidence            456788889     9999999999999998763

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.74  E-value=0.00095  Score=60.32  Aligned_cols=32  Identities=31%  Similarity=0.484  Sum_probs=28.1

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      +..++|.     ||||+||||+++.+++.+++.++.+
T Consensus        77 ~~~lLL~-----GppGtGKTtla~~la~~l~~~~i~i  108 (516)
T 1sxj_A           77 FRAAMLY-----GPPGIGKTTAAHLVAQELGYDILEQ  108 (516)
T ss_dssp             CSEEEEE-----CSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEEE-----CCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            4578888     9999999999999999999877655

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.73  E-value=0.0018  Score=55.44  Aligned_cols=28  Identities=18%  Similarity=0.376  Sum_probs=24.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      ++..++|.     ||||+|||++++.+++.++.
T Consensus        69 ~~~~vLl~-----GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           69 AGRAVLIA-----GQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TTCEEEEE-----ESTTSSHHHHHHHHHHHHCS
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHHHHhcc
Confidence            34678999     99999999999999999863

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.73  E-value=0.0012  Score=56.58  Aligned_cols=41  Identities=17%  Similarity=0.268  Sum_probs=29.4

Q ss_pred             hHHHHHHHHhhcc--CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           16 DLMTELLRRMKCA--SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        16 ~~~~~~~~~~~~~--~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +..+.+.......  ...+..++|.     ||||+||||+++.+++.+
T Consensus        26 ~~~~~l~~~l~~~~~~~~~~~vll~-----G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           26 AELRRLAEVLAPALRGEKPSNALLY-----GLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             HHHHHHHHTTGGGTSSCCCCCEEEC-----BCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            3444444444322  3456678888     999999999999999887

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.73  E-value=0.00073  Score=52.10  Aligned_cols=24  Identities=21%  Similarity=0.146  Sum_probs=20.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +.++|.     |++||||||+++.|...+
T Consensus         7 ~~i~i~-----G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            7 PLLAFA-----AWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEE-----eCCCCCHHHHHHHHHHhc
Confidence            356666     999999999999998765

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.73  E-value=0.0015  Score=53.50  Aligned_cols=42  Identities=21%  Similarity=0.332  Sum_probs=28.7

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      ..++.+..........+..++|.     |+||+|||++++.+++..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~vll~-----G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           13 NSFLEVLEQVSHLAPLDKPVLII-----GERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             HHHHHHHHHHHHHTTSCSCEEEE-----CCTTSCHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEE-----CCCCCcHHHHHHHHHHhcC
Confidence            34444444443222234568888     9999999999999998764

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.00049  Score=58.27  Aligned_cols=28  Identities=21%  Similarity=0.129  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..++..+.|.     ||||+|||++++.+++.+
T Consensus        42 ~~~~~~lli~-----GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           42 SSQNKLFYIT-----NADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TTCCCEEEEE-----CCCSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            4577789999     999999999999999988

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.71  E-value=0.0017  Score=54.53  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=29.2

Q ss_pred             HHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           21 LLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        21 ~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +++.+...-.++..++|+     ||+||||||+++.|+..+
T Consensus       115 vL~~vsl~i~~Ge~vaIv-----GpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          115 ALKLWLKGIPKKNCLAFI-----GPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHTCTTCSEEEEE-----CSSSSSHHHHHHHHHHHH
T ss_pred             hhccceEEecCCCEEEEE-----CCCCCcHHHHHHHHhhhc
Confidence            444444455677889999     999999999999999877

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.71  E-value=0.0017  Score=58.30  Aligned_cols=35  Identities=29%  Similarity=0.559  Sum_probs=29.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ..+..++|.     ||||+|||++++.++..++.+++.+.
T Consensus       236 ~~~~~vLL~-----GppGtGKT~lAraia~~~~~~fv~vn  270 (489)
T 3hu3_A          236 KPPRGILLY-----GPPGTGKTLIARAVANETGAFFFLIN  270 (489)
T ss_dssp             CCCCEEEEE-----CSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred             CCCCcEEEE-----CcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence            345668889     99999999999999999987776554

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.67  E-value=0.0015  Score=54.79  Aligned_cols=32  Identities=38%  Similarity=0.603  Sum_probs=27.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA   67 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~   67 (251)
                      .+..++|.     |+||+|||++++.+++.++.+++.
T Consensus        37 ~~~~vll~-----G~~GtGKT~la~~i~~~~~~~~~~   68 (324)
T 1hqc_A           37 PLEHLLLF-----GPPGLGKTTLAHVIAHELGVNLRV   68 (324)
T ss_dssp             CCCCCEEE-----CCTTCCCHHHHHHHHHHHTCCEEE
T ss_pred             CCCcEEEE-----CCCCCCHHHHHHHHHHHhCCCEEE
Confidence            44568888     999999999999999999876543

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.63  E-value=0.0035  Score=55.47  Aligned_cols=37  Identities=16%  Similarity=0.075  Sum_probs=27.4

Q ss_pred             HHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           20 ELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        20 ~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..+..+...+..+..++|.     ||||+||||+++.++..+
T Consensus       118 ~~~~~~a~~~~~~~~lll~-----Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          118 HAALEVAKHPGRYNPLFIY-----GGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             HHHHHHHHSTTSSCCEEEE-----CSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCeEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            3444443333335678889     999999999999999877

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.59  E-value=0.0029  Score=56.45  Aligned_cols=27  Identities=26%  Similarity=0.498  Sum_probs=23.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .....++|+     ||||+|||++++.|+..+
T Consensus       199 ~~~~~~LL~-----G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          199 RTKNNPVLI-----GEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSSCEEEEE-----SCTTTTTHHHHHHHHHHH
T ss_pred             cCCCCeEEE-----CCCCCCHHHHHHHHHHHH
Confidence            344567899     999999999999999997

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.57  E-value=0.0019  Score=55.19  Aligned_cols=36  Identities=14%  Similarity=0.291  Sum_probs=28.4

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh------CCceechh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY------CLCHLATG   69 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~------~~~~i~~~   69 (251)
                      ...+..++|.     |++|+||||+++.+++.+      +..++..+
T Consensus        42 ~~~~~~vli~-----G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~   83 (386)
T 2qby_A           42 EEKPNNIFIY-----GLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN   83 (386)
T ss_dssp             TCCCCCEEEE-----ECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             CCCCCeEEEE-----CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            3456678888     999999999999999987      65555443

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.54  E-value=0.0017  Score=57.53  Aligned_cols=31  Identities=32%  Similarity=0.418  Sum_probs=27.2

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ..++|.     ||||+||||+++.+++.++..++.+
T Consensus        51 ~~vLL~-----GppGtGKTtlAr~ia~~~~~~f~~l   81 (447)
T 3pvs_A           51 HSMILW-----GPPGTGKTTLAEVIARYANADVERI   81 (447)
T ss_dssp             CEEEEE-----CSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEE-----CCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            578899     9999999999999999998776654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.53  E-value=0.00096  Score=54.17  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=20.6

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.+.++     ||.||||||+.+.|+--+
T Consensus        25 e~~~li-----G~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLL-----GPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            567777     999999999999998654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.53  E-value=0.00086  Score=53.22  Aligned_cols=25  Identities=24%  Similarity=0.320  Sum_probs=21.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ++-.+.++     ||.||||||+.+.|+-.
T Consensus        21 ~Ge~~~li-----G~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGL-----GPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEE-----CCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            45578888     99999999999999753

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.53  E-value=0.0041  Score=52.31  Aligned_cols=38  Identities=24%  Similarity=0.229  Sum_probs=28.7

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhC----Cc--eechhHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYC----LC--HLATGDMLRA   74 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~----~~--~i~~~~li~~   74 (251)
                      +..++|.     ||||+|||+++..++..+.    ..  +++..+++..
T Consensus       152 ~~~lll~-----G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~  195 (308)
T 2qgz_A          152 QKGLYLY-----GDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID  195 (308)
T ss_dssp             CCEEEEE-----CSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred             CceEEEE-----CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence            5678899     9999999999999987553    33  3566665543

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.52  E-value=0.0029  Score=54.34  Aligned_cols=27  Identities=26%  Similarity=0.312  Sum_probs=23.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..+..++|.     ||||+||||+++.+++.+
T Consensus        43 ~~~~~vll~-----G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFL-----GLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEE-----ECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            445678888     999999999999999986

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.51  E-value=0.0033  Score=53.44  Aligned_cols=27  Identities=22%  Similarity=0.308  Sum_probs=24.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+|..+.++     ||+||||||+++.|+..+
T Consensus       127 ~~g~vi~lv-----G~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFV-----GFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            457788889     999999999999999876

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.51  E-value=0.002  Score=53.74  Aligned_cols=24  Identities=21%  Similarity=0.516  Sum_probs=22.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..++|.     ||||+||||+++.|++.+
T Consensus        48 ~~~ll~-----G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFL-----GPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEE-----SCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEE-----CCCCcCHHHHHHHHHHHH
Confidence            468888     999999999999999987

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.48  E-value=0.0028  Score=53.71  Aligned_cols=24  Identities=29%  Similarity=0.683  Sum_probs=21.4

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .++|.     ||||+||||+++.+++.++
T Consensus        60 ~~ll~-----G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           60 HMLFY-----GPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CEEEE-----CSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEE-----CCCCCCHHHHHHHHHHHhC
Confidence            38888     9999999999999998863

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.48  E-value=0.0034  Score=53.34  Aligned_cols=22  Identities=36%  Similarity=0.739  Sum_probs=20.8

Q ss_pred             EEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           35 LILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        35 i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++|.     ||||+||||+++.+++.+
T Consensus        49 ~ll~-----Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           49 LLFY-----GPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             EEEE-----CSSSSSHHHHHHHHHHHH
T ss_pred             EEEE-----CCCCCCHHHHHHHHHHHH
Confidence            8889     999999999999999986

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.47  E-value=0.0005  Score=52.89  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=19.8

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+.|.     |++||||||+++.|...|
T Consensus         4 ~v~Iv-----G~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            4 ILSIV-----GTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             EEEEE-----ESCHHHHHHHHHHHHHHH
T ss_pred             EEEEE-----CCCCCCHHHHHHHHHHHh
Confidence            45566     999999999999998876

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.47  E-value=0.0019  Score=58.72  Aligned_cols=33  Identities=27%  Similarity=0.356  Sum_probs=27.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ++..++|.     ||||+||||+++.++..++.+++.+
T Consensus       107 ~g~~vll~-----Gp~GtGKTtlar~ia~~l~~~~~~i  139 (543)
T 3m6a_A          107 KGPILCLA-----GPPGVGKTSLAKSIAKSLGRKFVRI  139 (543)
T ss_dssp             CSCEEEEE-----SSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHHHhcCCCeEEE
Confidence            56778899     9999999999999999997655433

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.45  E-value=0.002  Score=57.89  Aligned_cols=32  Identities=28%  Similarity=0.536  Sum_probs=26.9

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      +.-++|+     ||||+||||+++.++...+.+++.+
T Consensus        64 p~GvLL~-----GppGtGKTtLaraIa~~~~~~~i~i   95 (499)
T 2dhr_A           64 PKGVLLV-----GPPGVGKTHLARAVAGEARVPFITA   95 (499)
T ss_dssp             CSEEEEE-----CSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            4458888     9999999999999999987766554

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.45  E-value=0.0021  Score=54.33  Aligned_cols=29  Identities=21%  Similarity=0.237  Sum_probs=25.2

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCcee
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL   66 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i   66 (251)
                      ..++|.     ||||+|||++++.+++.++.+++
T Consensus        47 ~~vll~-----G~pGtGKT~la~~la~~~~~~~~   75 (331)
T 2r44_A           47 GHILLE-----GVPGLAKTLSVNTLAKTMDLDFH   75 (331)
T ss_dssp             CCEEEE-----SCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             CeEEEE-----CCCCCcHHHHHHHHHHHhCCCeE
Confidence            358889     99999999999999999876654

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.41  E-value=0.0014  Score=62.11  Aligned_cols=35  Identities=29%  Similarity=0.533  Sum_probs=30.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      .++..+++.     ||||+|||.+|+.+|...+.++++++
T Consensus       509 ~~~~gvLl~-----GPPGtGKT~lAkaiA~e~~~~f~~v~  543 (806)
T 3cf2_A          509 TPSKGVLFY-----GPPGCGKTLLAKAIANECQANFISIK  543 (806)
T ss_dssp             CCCSCCEEE-----SSTTSSHHHHHHHHHHTTTCEEEECC
T ss_pred             CCCceEEEe-----cCCCCCchHHHHHHHHHhCCceEEec
Confidence            345668999     99999999999999999998887663

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.40  E-value=0.0024  Score=54.31  Aligned_cols=22  Identities=36%  Similarity=0.667  Sum_probs=20.5

Q ss_pred             EEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           35 LILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        35 i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++|.     ||+|+||||+++.|+..+
T Consensus        39 ~ll~-----Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           39 LLLY-----GPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             EEEE-----CSTTSSHHHHHHTHHHHH
T ss_pred             EEEE-----CCCCCCHHHHHHHHHHHH
Confidence            8889     999999999999999965

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.37  E-value=0.0023  Score=49.94  Aligned_cols=23  Identities=35%  Similarity=0.564  Sum_probs=19.9

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+.|+     |++||||||+.+.|+..+
T Consensus         3 ~i~i~-----G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLT-----GPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEE-----SCCSSCHHHHHHHHHHHH
T ss_pred             EEEEE-----CCCCChHHHHHHHHHhhc
Confidence            45566     999999999999999876

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.35  E-value=0.0016  Score=56.04  Aligned_cols=26  Identities=35%  Similarity=0.583  Sum_probs=21.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++-.+++.     ||+||||||+.+.|...+
T Consensus       122 ~~g~i~I~-----GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          122 PRGLVLVT-----GPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SSEEEEEE-----CSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHHhcc
Confidence            33478888     999999999999997765

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.34  E-value=0.0029  Score=51.97  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=23.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+++.     ||.||||||+.+.|+..+
T Consensus        23 ~~g~~v~i~-----Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           23 RKMGLILVT-----GPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             CSSEEEEEE-----CSTTCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEE-----CCCCccHHHHHHHHHHhC
Confidence            466688888     999999999999998765

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.33  E-value=0.0021  Score=50.99  Aligned_cols=27  Identities=19%  Similarity=0.153  Sum_probs=23.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.|+     ||+||||||+++.|+-.+
T Consensus        23 ~~G~~~~l~-----G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           23 ETQAITEVF-----GEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             ESSEEEEEE-----ESTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            366788888     999999999999998744

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.32  E-value=0.0053  Score=52.33  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=28.7

Q ss_pred             HHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           20 ELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        20 ~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..+.....++..+.|+     |+|||||||+.+.|...+
T Consensus        43 ~~l~~i~~~~~~g~~v~i~-----G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           43 DLIDAVLPQTGRAIRVGIT-----GVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             HHHHHHGGGCCCSEEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred             HHHHhCCcccCCCeEEEEE-----CCCCCCHHHHHHHHHHhh
Confidence            3444554445678889999     999999999999998654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.31  E-value=0.006  Score=52.31  Aligned_cols=28  Identities=29%  Similarity=0.373  Sum_probs=24.2

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..+.+.|++.     |+||+||||++..|+..+
T Consensus        76 ~~~~~~I~i~-----G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           76 SGNAHRVGIT-----GVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCCSEEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred             cCCceEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            4466788888     999999999999998876

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.31  E-value=0.0052  Score=52.71  Aligned_cols=23  Identities=35%  Similarity=0.605  Sum_probs=21.7

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++|.     ||+|+||||+++.++..+
T Consensus        46 ~~li~-----G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLL-----GRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred             eEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            78889     999999999999999988

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.30  E-value=0.0049  Score=58.23  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=28.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh----------CCceechh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY----------CLCHLATG   69 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~----------~~~~i~~~   69 (251)
                      ..+..++|.     ||||+|||++++.|++.+          +..++..+
T Consensus       199 ~~~~~vLL~-----G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~  243 (758)
T 3pxi_A          199 RTKNNPVLI-----GEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD  243 (758)
T ss_dssp             SSSCEEEEE-----SCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred             CCCCCeEEE-----CCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence            345568899     999999999999999997          66666554

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.28  E-value=0.003  Score=53.12  Aligned_cols=26  Identities=23%  Similarity=0.428  Sum_probs=23.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..++++     ||.||||||+++.|+..+
T Consensus       101 ~g~vi~lv-----G~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVV-----GVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence            46688888     999999999999999876

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.27  E-value=0.0044  Score=48.73  Aligned_cols=28  Identities=25%  Similarity=0.112  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .++..+++.     |++||||||++..|+...+
T Consensus        18 ~~G~~~~i~-----G~~GsGKTtl~~~l~~~~~   45 (220)
T 2cvh_A           18 APGVLTQVY-----GPYASGKTTLALQTGLLSG   45 (220)
T ss_dssp             CTTSEEEEE-----CSTTSSHHHHHHHHHHHHC
T ss_pred             cCCEEEEEE-----CCCCCCHHHHHHHHHHHcC
Confidence            456678888     9999999999999987433

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.25  E-value=0.0032  Score=49.86  Aligned_cols=26  Identities=27%  Similarity=0.253  Sum_probs=22.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..+++.     |++||||||+++.|+..+
T Consensus        22 ~G~~~~i~-----G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           22 QGFFIALT-----GEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             TTCEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEE-----cCCCCCHHHHHHHHHHHH
Confidence            56678888     999999999999998654

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.24  E-value=0.0037  Score=52.45  Aligned_cols=41  Identities=20%  Similarity=0.336  Sum_probs=29.2

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..+.++..........+..++|.     |+||+|||++|+.+++..
T Consensus         9 ~~~~~~~~~~~~~a~~~~~vLi~-----Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A            9 PAMQHLLNEIAMVAPSDATVLIH-----GDSGTGKELVARALHACS   49 (304)
T ss_dssp             HHHHHHHHHHHHHCSTTSCEEEE-----SCTTSCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhCCCCcEEEE-----CCCCchHHHHHHHHHHhC
Confidence            34455555444333345568889     999999999999999864

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.24  E-value=0.0034  Score=52.82  Aligned_cols=26  Identities=23%  Similarity=0.483  Sum_probs=22.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..+++.     |++||||||++..|+..+
T Consensus       103 ~~~vi~iv-----G~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          103 PPFVIMVV-----GVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SCEEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEE-----cCCCChHHHHHHHHHHHH
Confidence            45567788     999999999999999877

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.23  E-value=0.0051  Score=51.41  Aligned_cols=39  Identities=28%  Similarity=0.508  Sum_probs=27.3

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++++.+...+. .+ +.+.++|.     ||||+||||+++.+++.+
T Consensus        32 ~~~~~l~~~l~-~~-~~~~~ll~-----G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           32 HIVKRLKHYVK-TG-SMPHLLFA-----GPPGVGKTTAALALAREL   70 (327)
T ss_dssp             HHHHHHHHHHH-HT-CCCEEEEE-----SCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-cC-CCCeEEEE-----CcCCCCHHHHHHHHHHHh
Confidence            44444443333 22 33348889     999999999999999986

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.22  E-value=0.0025  Score=51.44  Aligned_cols=27  Identities=37%  Similarity=0.449  Sum_probs=22.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.++++     ||.||||||+.+.|+--+
T Consensus        29 ~~Ge~~~ii-----G~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           29 KEGEFVSIM-----GPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CTTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCcHHHHHHHHhcCC
Confidence            456678888     999999999999997644

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.21  E-value=0.0037  Score=52.50  Aligned_cols=26  Identities=19%  Similarity=0.350  Sum_probs=22.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..+.++     |+.||||||+++.|+..+
T Consensus        99 ~g~vi~lv-----G~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           99 KPAVIMIV-----GVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SCEEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEE-----cCCCCCHHHHHHHHHHHH
Confidence            46678888     999999999999999876

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.19  E-value=0.0086  Score=49.22  Aligned_cols=28  Identities=21%  Similarity=0.315  Sum_probs=23.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .+...++|.     ||||+|||+++..|+..++
T Consensus       102 ~~~n~~~l~-----GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A          102 GKRNTIWLF-----GPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEE-----CSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEE-----CCCCCCHHHHHHHHHhhhc
Confidence            334569999     9999999999999999754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.19  E-value=0.0042  Score=47.81  Aligned_cols=29  Identities=17%  Similarity=0.330  Sum_probs=24.9

Q ss_pred             ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      |...+..+|+++     |.+|+||||+...|...
T Consensus         2 m~~~~~~ki~v~-----G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            2 MEKKSSYKTVLL-----GESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CCCCSSEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred             CCCCcceEEEEE-----CCCCCCHHHHHHHHHhC
Confidence            345677899999     99999999999999765

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.14  E-value=0.007  Score=50.46  Aligned_cols=39  Identities=26%  Similarity=0.392  Sum_probs=27.5

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++++.+...+. ....+. ++|.     ||+|+||||+++.+++.+
T Consensus        28 ~~~~~l~~~l~-~~~~~~-~ll~-----G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           28 ETIDRLQQIAK-DGNMPH-MIIS-----GMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             HHHHHHHHHHH-SCCCCC-EEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-cCCCCe-EEEE-----CcCCCCHHHHHHHHHHHh
Confidence            44444444443 223333 8889     999999999999999986

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.12  E-value=0.0028  Score=53.45  Aligned_cols=32  Identities=16%  Similarity=0.068  Sum_probs=26.7

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ..+++.     |++|+||||+++.+++..++.+++..
T Consensus        32 ~~v~i~-----G~~G~GKT~Ll~~~~~~~~~~~~~~~   63 (350)
T 2qen_A           32 PLTLLL-----GIRRVGKSSLLRAFLNERPGILIDCR   63 (350)
T ss_dssp             SEEEEE-----CCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred             CeEEEE-----CCCcCCHHHHHHHHHHHcCcEEEEee
Confidence            467788     99999999999999998876666654

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.10  E-value=0.0053  Score=51.11  Aligned_cols=23  Identities=30%  Similarity=0.715  Sum_probs=21.1

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++|.     ||||+||||+++.+++.+
T Consensus        40 ~~ll~-----G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           40 HLLFS-----GPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CEEEE-----SSSSSSHHHHHHHHHHHH
T ss_pred             eEEEE-----CcCCcCHHHHHHHHHHHh
Confidence            38889     999999999999999986

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.09  E-value=0.0037  Score=47.97  Aligned_cols=34  Identities=15%  Similarity=0.138  Sum_probs=27.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD   70 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~   70 (251)
                      .+.-++|.     |++|+||||++..|.++ |+.+++-|.
T Consensus        15 ~G~gvli~-----G~SGaGKStlal~L~~r-G~~lvaDD~   48 (181)
T 3tqf_A           15 DKMGVLIT-----GEANIGKSELSLALIDR-GHQLVCDDV   48 (181)
T ss_dssp             TTEEEEEE-----ESSSSSHHHHHHHHHHT-TCEEEESSE
T ss_pred             CCEEEEEE-----cCCCCCHHHHHHHHHHc-CCeEecCCE
Confidence            34567788     99999999999999885 887776653

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.07  E-value=0.006  Score=52.07  Aligned_cols=42  Identities=14%  Similarity=0.293  Sum_probs=30.0

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      ++.+.+...+. ....+..++|.     ||+|+||||+++.+++.++.
T Consensus        23 ~~~~~L~~~l~-~~~~~~~~ll~-----G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           23 HVLTALANGLS-LGRIHHAYLFS-----GTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             HHHHHHHHHHH-HTCCCSEEEEE-----SCTTSSHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHH-hCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhCC
Confidence            44444444443 23344567888     99999999999999998854

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.07  E-value=0.0034  Score=50.79  Aligned_cols=27  Identities=19%  Similarity=0.310  Sum_probs=22.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.++|+     ||.||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           29 PEGALVAVV-----GQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CTTCEEEEE-----CSTTSSHHHHHHHHTTCS
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            466678888     999999999999997654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.07  E-value=0.0029  Score=50.71  Aligned_cols=27  Identities=33%  Similarity=0.318  Sum_probs=22.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+--+
T Consensus        28 ~~Ge~~~ii-----G~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           28 KKGEFVSII-----GASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             ETTCEEEEE-----ECTTSCHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            355677788     999999999999997544

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.06  E-value=0.0028  Score=55.67  Aligned_cols=35  Identities=31%  Similarity=0.464  Sum_probs=26.6

Q ss_pred             HHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           21 LLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        21 ~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .+..+. . .++-.+++.     ||.||||||+.+.|...+.
T Consensus       158 ~L~~l~-~-~~ggii~I~-----GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          158 NFRRLI-K-RPHGIILVT-----GPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             HHHHHH-T-SSSEEEEEE-----CSTTSCHHHHHHHHHHHHC
T ss_pred             HHHHHH-H-hcCCeEEEE-----CCCCCCHHHHHHHHHhhcC
Confidence            444442 2 455678888     9999999999999988773

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.03  E-value=0.0036  Score=53.87  Aligned_cols=28  Identities=18%  Similarity=0.272  Sum_probs=24.8

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      +.+++|+     |++||||||+++.|+..+...
T Consensus       170 g~k~~Iv-----G~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAIL-----GGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEE-----CCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEE-----CCCCCCHHHHHHHHHHHhCCC
Confidence            6788999     999999999999999987643

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.03  E-value=0.0021  Score=52.85  Aligned_cols=24  Identities=38%  Similarity=0.621  Sum_probs=20.8

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +-.+.++     ||.||||||+.+.|+-.
T Consensus        30 Ge~~~i~-----G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           30 GEKVIIL-----GPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SSEEEEE-----CCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            5677788     99999999999999764

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.01  E-value=0.0045  Score=47.97  Aligned_cols=25  Identities=32%  Similarity=0.387  Sum_probs=19.2

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +..+++.     |++||||||++-.++.++
T Consensus         3 g~i~vi~-----G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVIT-----GPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            3456666     999999999997776655

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.00  E-value=0.0038  Score=51.27  Aligned_cols=27  Identities=30%  Similarity=0.327  Sum_probs=22.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.|+     ||.||||||+.+.|+--+
T Consensus        30 ~~Ge~~~li-----G~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           30 RAGDVISII-----GSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CTTCEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            466678888     999999999999997654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.00  E-value=0.0044  Score=49.57  Aligned_cols=26  Identities=12%  Similarity=0.083  Sum_probs=22.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++..++|.     |++||||||++..|+..
T Consensus        22 ~~G~~~~i~-----G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           22 ETGSITEMF-----GEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             ETTSEEEEE-----CCTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEE-----CCCCCcHHHHHHHHHHH
Confidence            356678888     99999999999999884

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.00  E-value=0.004  Score=50.50  Aligned_cols=27  Identities=30%  Similarity=0.650  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.++|+     ||.||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           26 QPNSIIAFA-----GPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             CTTEEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            567788888     999999999999997654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.98  E-value=0.0038  Score=51.43  Aligned_cols=27  Identities=26%  Similarity=0.490  Sum_probs=22.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+-.+
T Consensus        35 ~~Ge~~~li-----G~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           35 ASGEMVAII-----GPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             ETTCEEEEE-----CCTTSCHHHHHHHHTSSS
T ss_pred             cCCCEEEEE-----CCCCCcHHHHHHHHhcCC
Confidence            456678888     999999999999997654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.98  E-value=0.0082  Score=52.90  Aligned_cols=26  Identities=31%  Similarity=0.376  Sum_probs=22.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..+++.     |++||||||++..|+..+
T Consensus        96 ~~~vI~lv-----G~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           96 LPFIIMLV-----GVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSEEEEEC-----CCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            36667777     999999999999999776

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.97  E-value=0.0046  Score=51.73  Aligned_cols=26  Identities=27%  Similarity=0.402  Sum_probs=22.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..++++     |++||||||++..|+..+
T Consensus       104 ~g~vi~lv-----G~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          104 HSKYIVLF-----GSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CSSEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            46678888     999999999999998765

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.97  E-value=0.0037  Score=51.78  Aligned_cols=27  Identities=22%  Similarity=0.240  Sum_probs=22.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.|+     ||.||||||+.+.|+--+
T Consensus        32 ~~Ge~~~ii-----GpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           32 KRGEVTAIL-----GGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ETTSEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHHcCC
Confidence            456677888     999999999999997654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.93  E-value=0.0058  Score=52.54  Aligned_cols=26  Identities=19%  Similarity=0.350  Sum_probs=23.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..+.++     |+.||||||+++.|+..+
T Consensus       156 ~g~vi~lv-----G~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          156 KPAVIMIV-----GVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSEEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEE-----cCCCChHHHHHHHHHhhc
Confidence            56678888     999999999999999876

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.93  E-value=0.0043  Score=51.04  Aligned_cols=27  Identities=30%  Similarity=0.442  Sum_probs=22.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.|+     ||.||||||+.+.|+-.+
T Consensus        48 ~~Gei~~li-----G~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           48 REGEVVVVI-----GPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CTTCEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----cCCCCcHHHHHHHHHcCC
Confidence            456678888     999999999999997654

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.93  E-value=0.0054  Score=51.94  Aligned_cols=24  Identities=21%  Similarity=0.356  Sum_probs=22.0

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .++|.     |+||+|||++++.+++.++
T Consensus        47 ~vLl~-----G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           47 GVLVF-----GDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CEEEE-----CCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEE-----CCCCccHHHHHHHHHHhCc
Confidence            38888     9999999999999999876

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.91  E-value=0.0041  Score=50.59  Aligned_cols=27  Identities=33%  Similarity=0.560  Sum_probs=22.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.++|+     ||.||||||+.+.|+--+
T Consensus        33 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           33 KQGEVIGIV-----GRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             ETTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            456677888     999999999999997655

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.90  E-value=0.0054  Score=50.47  Aligned_cols=26  Identities=35%  Similarity=0.617  Sum_probs=22.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++-.+.|+     ||.||||||+.+.|+-.
T Consensus        44 ~~Ge~~~l~-----G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           44 HPGEVHAIM-----GPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTCEEEEE-----CCTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            456677788     99999999999999874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.90  E-value=0.007  Score=50.29  Aligned_cols=28  Identities=14%  Similarity=0.219  Sum_probs=23.7

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.++|.     |+|||||||++..|+-.+
T Consensus        32 l~~G~~~~i~-----G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           32 ARGGEVIMVT-----SGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             BCTTCEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEE-----eCCCCCHHHHHHHHHHHH
Confidence            3467788888     999999999999987765

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.89  E-value=0.0051  Score=50.10  Aligned_cols=26  Identities=31%  Similarity=0.552  Sum_probs=22.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++-.+.|+     ||.||||||+.+.|+-.
T Consensus        27 ~~Ge~~~l~-----G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           27 PKGEVHALM-----GPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ETTCEEEEE-----CSTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            356677788     99999999999999874

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.89  E-value=0.0039  Score=49.63  Aligned_cols=27  Identities=26%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+-.+
T Consensus        33 ~~Ge~~~ii-----G~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           33 EKGNVVNFH-----GPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             ETTCCEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            355567788     999999999999997654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.87  E-value=0.0043  Score=50.77  Aligned_cols=27  Identities=33%  Similarity=0.507  Sum_probs=22.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+-.+
T Consensus        31 ~~Ge~~~li-----G~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           31 NKGDVTLII-----GPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             ETTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred             eCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            456678888     999999999999997654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.87  E-value=0.0045  Score=51.08  Aligned_cols=27  Identities=41%  Similarity=0.751  Sum_probs=22.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.++|+     ||.||||||+.+.|+-.+
T Consensus        43 ~~Ge~~~i~-----G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           43 YPGKVTALV-----GPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CTTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            466678888     999999999999997655

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.87  E-value=0.0045  Score=49.72  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=22.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..+.++     ||.||||||+.+.|+-.+
T Consensus        32 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           32 ERGQLLAVA-----GSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             ETTCEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            456678888     999999999999997654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.86  E-value=0.0044  Score=50.16  Aligned_cols=27  Identities=30%  Similarity=0.361  Sum_probs=22.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+-.+
T Consensus        30 ~~Ge~~~l~-----G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           30 PRGQIVTLI-----GANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            456678888     999999999999997654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.86  E-value=0.0046  Score=50.68  Aligned_cols=27  Identities=30%  Similarity=0.463  Sum_probs=22.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.++|+     ||.||||||+.+.|+-.+
T Consensus        44 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           44 PSGTTCALV-----GHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             CTTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHhccC
Confidence            466678888     999999999999997654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.86  E-value=0.0048  Score=50.52  Aligned_cols=27  Identities=37%  Similarity=0.481  Sum_probs=22.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.|+     ||.||||||+.+.|+--+
T Consensus        39 ~~Gei~~l~-----G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           39 EEGEIFGLI-----GPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CTTCEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred             cCCcEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            466678888     999999999999997654

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.85  E-value=0.0061  Score=47.91  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=18.3

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +|.+++.     |+||||||+.|..+..
T Consensus         5 ~mi~l~t-----G~pGsGKT~~a~~~~~   27 (199)
T 2r2a_A            5 AEICLIT-----GTPGSGKTLKMVSMMA   27 (199)
T ss_dssp             CCEEEEE-----CCTTSSHHHHHHHHHH
T ss_pred             eeEEEEE-----eCCCCCHHHHHHHHHH
Confidence            4566666     9999999999888643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.84  E-value=0.0068  Score=46.30  Aligned_cols=31  Identities=29%  Similarity=0.473  Sum_probs=25.1

Q ss_pred             hhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           25 MKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        25 ~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ....|.+..+++++     |++|+||||+...|...
T Consensus         9 ~~~~~~~~~ki~iv-----G~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A            9 LKSAPDQEVRILLL-----GLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CSSCCSSCEEEEEE-----ESTTSSHHHHHHHHCCS
T ss_pred             HhccCCCceEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            33445677899999     99999999999998653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.80  E-value=0.0067  Score=44.87  Aligned_cols=23  Identities=17%  Similarity=0.482  Sum_probs=20.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ++++++     |++|+||||+...|...
T Consensus         2 ~ki~v~-----G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIV-----GRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEE-----CCTTSSHHHHHHHHHHC
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            468888     99999999999999764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.80  E-value=0.011  Score=50.33  Aligned_cols=33  Identities=24%  Similarity=0.198  Sum_probs=26.0

Q ss_pred             HhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           24 RMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        24 ~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .......++..+++.     |+||+||||+...|+..+
T Consensus        48 ~l~~~~~~~~~i~i~-----G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           48 AIMPYCGNTLRLGVT-----GTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             HHGGGCSCSEEEEEE-----ECTTSCHHHHHHHHHHHH
T ss_pred             hCCcccCCCEEEEEE-----cCCCCCHHHHHHHHHHHH
Confidence            333334567788888     999999999999998765

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.78  E-value=0.0071  Score=54.09  Aligned_cols=27  Identities=22%  Similarity=0.410  Sum_probs=23.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..+.|+     |+.||||||+++.|+..+
T Consensus       291 ~~GeVI~LV-----GpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          291 KAPFVILMV-----GVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CTTEEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEE-----CCCcccHHHHHHHHHHHh
Confidence            457788888     999999999999998876

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.78  E-value=0.0051  Score=50.11  Aligned_cols=27  Identities=30%  Similarity=0.458  Sum_probs=22.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~li-----G~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           24 RAGEILHLV-----GPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             ETTCEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCcHHHHHHHHhCCC
Confidence            456678888     999999999999997644

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.77  E-value=0.0069  Score=52.34  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..+++.     ||+||||||+.+.|+..+
T Consensus       134 ~~g~~i~iv-----G~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          134 RKMGLILVT-----GPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSSEEEEEE-----CSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHHhhc
Confidence            356678888     999999999999998866

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.76  E-value=0.0069  Score=46.22  Aligned_cols=25  Identities=32%  Similarity=0.452  Sum_probs=21.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +..+++++     |++|+||||+.+.|...
T Consensus         6 ~~~~i~lv-----G~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALI-----GNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEE-----CSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            45689999     99999999999999763

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.76  E-value=0.0054  Score=50.45  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=22.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+--+
T Consensus        31 ~~Ge~~~li-----G~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           31 NEGECLLVA-----GNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CTTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCcHHHHHHHHhCCC
Confidence            466678888     999999999999997654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.75  E-value=0.0068  Score=44.93  Aligned_cols=24  Identities=17%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +.+++++     |++|+||||+...|...
T Consensus         3 ~~~i~v~-----G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVL-----GSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEE-----CCCCCCHHHHHHHHHcC
Confidence            4678999     99999999999888753

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.74  E-value=0.0067  Score=45.13  Aligned_cols=25  Identities=12%  Similarity=0.207  Sum_probs=21.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ...+|+++     |.+|+||||+...|...
T Consensus         4 ~~~~i~v~-----G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVV-----GNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEE-----CSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEE-----CcCCCCHHHHHHHHHcC
Confidence            45789999     99999999999999763

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.74  E-value=0.0053  Score=50.90  Aligned_cols=27  Identities=30%  Similarity=0.353  Sum_probs=22.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.|+     ||.||||||+.+.|+-.+
T Consensus        45 ~~Ge~~~li-----G~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           45 AKGDKWILY-----GLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             ETTCEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCcHHHHHHHHhCCC
Confidence            356677788     999999999999997654

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.73  E-value=0.016  Score=49.18  Aligned_cols=43  Identities=14%  Similarity=0.175  Sum_probs=31.3

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      +.++.+...+. .++.+..++|.     ||+|+||||+++.+++.+...
T Consensus         9 ~~~~~l~~~i~-~~~~~~a~L~~-----G~~G~GKt~~a~~la~~l~~~   51 (334)
T 1a5t_A            9 PDFEKLVASYQ-AGRGHHALLIQ-----ALPGMGDDALIYALSRYLLCQ   51 (334)
T ss_dssp             HHHHHHHHHHH-TTCCCSEEEEE-----CCTTSCHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHH-cCCcceeEEEE-----CCCCchHHHHHHHHHHHHhCC
Confidence            34444444443 34456679999     999999999999999998643

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.72  E-value=0.007  Score=45.70  Aligned_cols=26  Identities=23%  Similarity=0.368  Sum_probs=21.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+|+++     |++|+||||+...|...
T Consensus         6 ~~~~~i~v~-----G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            6 KNILKVIIL-----GDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             -CEEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEE-----CCCCCCHHHHHHHHHhC
Confidence            456789999     99999999999988753

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.71  E-value=0.0066  Score=45.58  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.7

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+++++     |++|+||||+.+.|..
T Consensus         4 ~~v~lv-----G~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALI-----GNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEE-----CSTTSSHHHHHHHHHC
T ss_pred             cEEEEE-----CCCCCCHHHHHHHHhC
Confidence            568888     9999999999999975

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=95.71  E-value=0.015  Score=49.12  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=22.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..+.+.     |++|+||||++..|+..+
T Consensus       104 ~~~vI~iv-----G~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          104 RLNIFMLV-----GVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             SCEEEEEE-----SSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            45677788     999999999999998876

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.71  E-value=0.0074  Score=56.97  Aligned_cols=31  Identities=19%  Similarity=0.324  Sum_probs=26.3

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ..++|.     ||||+|||++|+.|++.++.+++..
T Consensus       489 ~~~ll~-----G~~GtGKT~la~~la~~l~~~~~~i  519 (758)
T 1r6b_X          489 GSFLFA-----GPTGVGKTEVTVQLSKALGIELLRF  519 (758)
T ss_dssp             EEEEEE-----CSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             eEEEEE-----CCCCCcHHHHHHHHHHHhcCCEEEE
Confidence            368888     9999999999999999998665533

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.70  E-value=0.0091  Score=44.59  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+..+++++     |.+|+||||+...|..
T Consensus         5 ~~~~~i~v~-----G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            5 TREMRILIL-----GLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SSCEEEEEE-----CSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEE-----CCCCCCHHHHHHHHhc
Confidence            467889999     9999999999999965

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.70  E-value=0.007  Score=48.41  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=21.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..+++.     |+|||||||++..++...
T Consensus        22 ~G~~~~i~-----G~~GsGKTtl~~~~~~~~   47 (247)
T 2dr3_A           22 ERNVVLLS-----GGPGTGKTIFSQQFLWNG   47 (247)
T ss_dssp             TTCEEEEE-----ECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            56678888     999999999988886543

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.68  E-value=0.0058  Score=49.92  Aligned_cols=27  Identities=22%  Similarity=0.315  Sum_probs=22.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~l~-----G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           29 NKGDILAVL-----GQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             ETTCEEEEE-----CCSSSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            356677788     999999999999997654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.67  E-value=0.0071  Score=46.92  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.2

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+++++     |++||||||+.+.|...
T Consensus         6 ~kv~lv-----G~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLI-----GDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEE-----SSTTSSHHHHHHHHHHS
T ss_pred             EEEEEE-----CcCCCCHHHHHHHHhcC
Confidence            567888     99999999999999764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.66  E-value=0.0066  Score=46.05  Aligned_cols=25  Identities=16%  Similarity=0.417  Sum_probs=21.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ++.+++++     |.+|+||||+...|...
T Consensus         3 ~~~ki~iv-----G~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIA-----GRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEE-----ESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            46789999     99999999999999764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.66  E-value=0.0081  Score=53.04  Aligned_cols=26  Identities=27%  Similarity=0.445  Sum_probs=22.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +|..|++.     |++||||||++..|+..+
T Consensus        99 ~p~vIliv-----G~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMV-----GIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEE-----CcCCCCHHHHHHHHHHHH
Confidence            46778888     999999999999999876

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.64  E-value=0.0089  Score=46.14  Aligned_cols=28  Identities=21%  Similarity=0.350  Sum_probs=22.6

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+.+..+|+++     |.+|+||||+...|...
T Consensus        24 ~~~~~~ki~v~-----G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           24 AKSAEVKLAIF-----GRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             ---CCEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred             CCCCceEEEEE-----CCCCCCHHHHHHHHHhC
Confidence            34567899999     99999999999998764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.64  E-value=0.0069  Score=46.78  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+++++     |++||||||+.+.|+..
T Consensus        29 ~~kv~lv-----G~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           29 LFKVVLI-----GDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEE-----ECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEE-----CcCCCCHHHHHHHHhcC
Confidence            3567888     99999999999999764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.64  E-value=0.0086  Score=45.30  Aligned_cols=27  Identities=11%  Similarity=0.058  Sum_probs=22.2

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+..+++++     |.+|+||||+...|...
T Consensus         5 ~~~~~ki~v~-----G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            5 ASRFIKCVTV-----GDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             --CCCEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            4567789999     99999999999988754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.63  E-value=0.0076  Score=52.18  Aligned_cols=27  Identities=26%  Similarity=0.474  Sum_probs=23.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.|+     ||.||||||+.+.|+--+
T Consensus        27 ~~Ge~~~ll-----GpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           27 HEGEFVVFV-----GPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CTTCEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEE-----cCCCchHHHHHHHHHcCC
Confidence            466678888     999999999999998654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.63  E-value=0.0087  Score=47.13  Aligned_cols=26  Identities=19%  Similarity=0.185  Sum_probs=23.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +.+.+++.     |.+||||||+...|...+
T Consensus        29 ~~~~i~i~-----G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIM-----GAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEE-----ECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEE-----cCCCCCHHHHHHHHHHHh
Confidence            56688888     999999999999998875

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.63  E-value=0.0093  Score=45.75  Aligned_cols=26  Identities=23%  Similarity=0.482  Sum_probs=22.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+.++++++     |++||||||+...|...
T Consensus        46 ~~~~~i~vv-----G~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIA-----GPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            456789999     99999999999999764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.63  E-value=0.0066  Score=52.15  Aligned_cols=27  Identities=30%  Similarity=0.423  Sum_probs=22.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+--+
T Consensus        28 ~~Ge~~~ll-----GpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           28 DPGEILFII-----GASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CTTCEEEEE-----ESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEE-----CCCCchHHHHHHHHhcCC
Confidence            456678888     999999999999998644

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=95.61  E-value=0.0095  Score=51.27  Aligned_cols=29  Identities=24%  Similarity=0.197  Sum_probs=24.3

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .++..+++++     |.+||||||+++.+.-.++
T Consensus        30 ~~~~~killl-----G~~~SGKST~~kq~~i~~~   58 (362)
T 1zcb_A           30 SARLVKILLL-----GAGESGKSTFLKQMRIIHG   58 (362)
T ss_dssp             -CCCEEEEEE-----CSTTSSHHHHHHHHHHHHS
T ss_pred             hcCccEEEEE-----CCCCCcHHHHHHHHHHHhC
Confidence            4678899999     9999999999999965553

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.61  E-value=0.0092  Score=51.06  Aligned_cols=26  Identities=35%  Similarity=0.428  Sum_probs=22.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ....++|+     |+|||||||+...|...+
T Consensus        73 ~~~~v~lv-----G~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           73 LAFRVGLS-----GPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             SCEEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEE-----cCCCCCHHHHHHHHHHHh
Confidence            36788888     999999999999998754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.60  E-value=0.0082  Score=44.51  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=21.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +..+++++     |.+|+||||+...|...
T Consensus         3 ~~~~i~v~-----G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            3 ALHKVIMV-----GSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEE-----CCCCCCHHHHHHHHHhC
Confidence            35679999     99999999999998754

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.60  E-value=0.0079  Score=51.72  Aligned_cols=27  Identities=33%  Similarity=0.576  Sum_probs=22.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+--+
T Consensus        27 ~~Ge~~~ll-----GpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           27 KDGEFVALL-----GPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CTTCEEEEE-----CSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEE-----cCCCchHHHHHHHHHCCC
Confidence            466678888     999999999999998654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.60  E-value=0.0071  Score=44.70  Aligned_cols=24  Identities=21%  Similarity=0.486  Sum_probs=20.5

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+++++     |.+|+||||+...|...
T Consensus         3 ~~~i~v~-----G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVV-----GAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEE-----CCCCCCHHHHHHHHHhC
Confidence            3578888     99999999999998754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.59  E-value=0.0055  Score=46.86  Aligned_cols=24  Identities=25%  Similarity=0.232  Sum_probs=20.6

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      ..+|+     |+.||||||+.+.|.-.++
T Consensus        28 ~~~i~-----G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIV-----GANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEE-----ECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEE-----CCCCCCHHHHHHHHHHHHc
Confidence            66777     9999999999999977654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.58  E-value=0.0093  Score=44.93  Aligned_cols=26  Identities=19%  Similarity=0.397  Sum_probs=22.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+++++     |.+|+||||+...|...
T Consensus         4 ~~~~ki~v~-----G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            4 MRQLKIVVL-----GDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CCEEEEEEE-----CCTTSSHHHHHHHHHGG
T ss_pred             CceEEEEEE-----CcCCCCHHHHHHHHHhC
Confidence            456789999     99999999999998753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.58  E-value=0.007  Score=45.74  Aligned_cols=27  Identities=30%  Similarity=0.340  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +.+..+++++     |.+|+||||+...|...
T Consensus         4 ~~~~~ki~~v-----G~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            4 SIPELRLGVL-----GDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CCCEEEEEEE-----CCGGGCHHHHHHHHHHS
T ss_pred             CCCceEEEEE-----CCCCCCHHHHHHHHHhC
Confidence            4466789999     99999999999998763

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.57  E-value=0.0083  Score=51.63  Aligned_cols=27  Identities=41%  Similarity=0.580  Sum_probs=23.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+--+
T Consensus        27 ~~Ge~~~ll-----GpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           27 KDGEFMALL-----GPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CTTCEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEE-----CCCCchHHHHHHHHhcCC
Confidence            466678888     999999999999998654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.57  E-value=0.0099  Score=44.76  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=22.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+..+++++     |.+|+||||+...|..
T Consensus         6 ~~~~~i~v~-----G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIM-----GHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEE-----SCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHhC
Confidence            467789999     9999999999999865

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.56  E-value=0.0087  Score=45.11  Aligned_cols=26  Identities=19%  Similarity=0.387  Sum_probs=22.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+|+++     |.+|+||||+...|...
T Consensus         7 ~~~~~i~v~-----G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVV-----GGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEE-----ECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEE-----CCCCCCHHHHHHHHHhC
Confidence            356789999     99999999999998764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.53  E-value=0.0087  Score=51.70  Aligned_cols=27  Identities=37%  Similarity=0.553  Sum_probs=22.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+--+
T Consensus        35 ~~Ge~~~ll-----GpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           35 KDGEFLVLL-----GPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CTTCEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEE-----CCCCChHHHHHHHHHcCC
Confidence            466678888     999999999999998654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.53  E-value=0.0082  Score=51.51  Aligned_cols=27  Identities=33%  Similarity=0.453  Sum_probs=22.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+--+
T Consensus        39 ~~Ge~~~ll-----GpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           39 REGEMVGLL-----GPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             ETTCEEEEE-----CSTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEE-----CCCCCcHHHHHHHHhCCC
Confidence            456678888     999999999999998644

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.52  E-value=0.0096  Score=47.05  Aligned_cols=27  Identities=22%  Similarity=0.215  Sum_probs=23.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+.++++++     |.+||||||+...|...+
T Consensus        36 ~~~~~i~iv-----G~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           36 HGVVAFDFM-----GAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TTCEEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEE-----cCCCCCHHHHHHHHHHHh
Confidence            356789999     999999999999998875

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.52  E-value=0.01  Score=56.87  Aligned_cols=26  Identities=27%  Similarity=0.440  Sum_probs=22.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+..++|+     |+||+||||+++.|+..+
T Consensus       190 ~~~~vlL~-----G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          190 TKNNPVLI-----GEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             SCCCCEEE-----ECTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEE-----cCCCCCHHHHHHHHHHHH
Confidence            34467888     999999999999999987

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.51  E-value=0.009  Score=51.42  Aligned_cols=27  Identities=22%  Similarity=0.211  Sum_probs=22.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.|+     ||.||||||+.+.|+--+
T Consensus        52 ~~Gei~~Ii-----GpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           52 PAGQIYGVI-----GASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CTTCEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEE-----cCCCchHHHHHHHHhcCC
Confidence            455667777     999999999999997654

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.51  E-value=0.0066  Score=51.21  Aligned_cols=25  Identities=20%  Similarity=0.212  Sum_probs=21.9

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      ..++|.     |++|+||||+++.+++..+
T Consensus        31 ~~v~i~-----G~~G~GKT~L~~~~~~~~~   55 (357)
T 2fna_A           31 PITLVL-----GLRRTGKSSIIKIGINELN   55 (357)
T ss_dssp             SEEEEE-----ESTTSSHHHHHHHHHHHHT
T ss_pred             CcEEEE-----CCCCCCHHHHHHHHHHhcC
Confidence            367778     9999999999999998874

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.50  E-value=0.0094  Score=44.26  Aligned_cols=23  Identities=22%  Similarity=0.482  Sum_probs=20.4

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ..+++++     |.+|+||||+.+.|..
T Consensus         3 ~~ki~v~-----G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            3 EYKLVVL-----GSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEE-----CSTTSSHHHHHHHHHH
T ss_pred             eeEEEEE-----CCCCCCHHHHHHHHHc
Confidence            4678899     9999999999999875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.50  E-value=0.006  Score=52.49  Aligned_cols=28  Identities=25%  Similarity=0.399  Sum_probs=24.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .++..+++.     ||.||||||+.+.|...+.
T Consensus       173 ~~G~~i~iv-----G~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          173 QLERVIVVA-----GETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             HTTCCEEEE-----ESSSSCHHHHHHHHHTTSC
T ss_pred             hcCCEEEEE-----CCCCCCHHHHHHHHHhcCC
Confidence            456679999     9999999999999988763

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.49  E-value=0.0081  Score=45.68  Aligned_cols=25  Identities=20%  Similarity=0.480  Sum_probs=21.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +..+|+++     |.+|+||||+...|...
T Consensus         3 ~~~ki~v~-----G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVV-----GADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEE-----CCCCCCHHHHHHHHHhC
Confidence            45789999     99999999999999753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.49  E-value=0.0096  Score=44.66  Aligned_cols=24  Identities=29%  Similarity=0.602  Sum_probs=20.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +..+++++     |.+|+||||+...|..
T Consensus         3 ~~~ki~i~-----G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            3 ALYRVVLL-----GDPGVGKTSLASLFAG   26 (175)
T ss_dssp             CEEEEEEE-----CCTTSSHHHHHHHHHC
T ss_pred             eEEEEEEE-----CCCCccHHHHHHHHhc
Confidence            45679999     9999999999998864

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.48  E-value=0.019  Score=48.04  Aligned_cols=25  Identities=28%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +..+++.     |++|+||||++..|+..+
T Consensus        98 ~~vi~i~-----G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           98 PYVIMLV-----GVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SEEEEEE-----CSSCSSTTHHHHHHHHHH
T ss_pred             CeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            5567777     999999999999999776

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.47  E-value=0.012  Score=47.15  Aligned_cols=27  Identities=19%  Similarity=0.041  Sum_probs=22.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..+++.     |+||+||||.+-.++.++
T Consensus        10 ~~G~i~lit-----G~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFIT-----GPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEE-----CSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence            356677777     999999999998888777

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.47  E-value=0.011  Score=46.41  Aligned_cols=27  Identities=22%  Similarity=0.441  Sum_probs=23.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+.++++++     |++|+||||+...|....
T Consensus        10 ~~~~~i~~~-----G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIA-----GPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEE-----CSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            356789999     999999999999998754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.47  E-value=0.008  Score=45.32  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=21.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+..+|+++     |.+|+||||+...|..
T Consensus         7 ~~~~~i~v~-----G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            7 DHLFKLLII-----GDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             CEEEEEEEE-----CCTTSCHHHHHHHHCS
T ss_pred             CcceEEEEE-----CCCCCCHHHHHHHHhc
Confidence            356789999     9999999999998854

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.46  E-value=0.0079  Score=49.56  Aligned_cols=26  Identities=19%  Similarity=0.290  Sum_probs=21.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..++|.     |++||||||++..++...
T Consensus        29 ~G~i~~i~-----G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           29 AGTVGALV-----SPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             TTSEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEE-----cCCCCCHHHHHHHHHHHH
Confidence            55678888     999999999999987543

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.45  E-value=0.0057  Score=54.29  Aligned_cols=23  Identities=26%  Similarity=0.535  Sum_probs=21.0

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+++.     |+|||||||++..+++.+
T Consensus        47 ~~li~-----G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTIN-----GPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred             EEEEE-----eCCCCCHHHHHHHHHHHH
Confidence            78888     999999999999998877

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.43  E-value=0.0047  Score=52.13  Aligned_cols=19  Identities=42%  Similarity=0.438  Sum_probs=16.6

Q ss_pred             ccCCCCCChhHHHHHHHHH
Q 025529           42 LAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~   60 (251)
                      |+|+.||||||+.+.|...
T Consensus         9 i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            9 LTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEESSSSSCHHHHHHHHHS
T ss_pred             EEecCCCCHHHHHHHHHhh
Confidence            3499999999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.41  E-value=0.0088  Score=45.66  Aligned_cols=27  Identities=11%  Similarity=0.337  Sum_probs=22.2

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +....+++++     |.+|+||||+...|...
T Consensus         4 ~~~~~ki~v~-----G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            4 QNVKCKIVVV-----GDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             --CEEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            3456789999     99999999999999764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.41  E-value=0.0064  Score=46.12  Aligned_cols=25  Identities=12%  Similarity=0.323  Sum_probs=21.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+..+|+++     |.+|+||||+...|..
T Consensus         4 ~~~~ki~~~-----G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            4 SKSRKIAIL-----GYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEE-----ESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEE-----CcCCCCHHHHHHHHHc
Confidence            356789999     9999999999999874

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.40  E-value=0.008  Score=49.55  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=19.6

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+.++     |++||||||+.+.|+...
T Consensus         4 ~v~lv-----G~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVV-----GQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEE-----ESSSSSHHHHHHHHHHHH
T ss_pred             EEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            45566     999999999999998765

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.40  E-value=0.01  Score=45.97  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=22.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+|+++     |.+|+||||+...|...
T Consensus         6 ~~~~ki~v~-----G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            6 KVLLKVIIL-----GDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             -CEEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEE-----CcCCCCHHHHHHHHHcC
Confidence            456789999     99999999999998764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.39  E-value=0.0074  Score=53.68  Aligned_cols=28  Identities=18%  Similarity=0.274  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++.++.|+     ||.||||||+++.|+..+
T Consensus       135 i~~Ge~v~Iv-----GpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          135 NFEGPRVVIV-----GGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SSSCCCEEEE-----ESTTSSHHHHHHHHHHTT
T ss_pred             eCCCCEEEEE-----CCCCCCHHHHHHHHhCcc
Confidence            3577889999     999999999999998765

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.39  E-value=0.0087  Score=44.53  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=20.5

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+++++     |++|+||||+...|...
T Consensus         3 ~~~i~v~-----G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            3 SIKLVLL-----GEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            4578888     99999999999988653

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.39  E-value=0.0052  Score=55.24  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=22.4

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      ..++|.     ||||+|||++|+.|+...+
T Consensus        42 ~~VLL~-----GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           42 ESVFLL-----GPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             CEEEEE-----CCSSSSHHHHHHHGGGGBS
T ss_pred             CeeEee-----cCchHHHHHHHHHHHHHHh
Confidence            468889     9999999999999999874

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.38  E-value=0.0097  Score=51.41  Aligned_cols=27  Identities=37%  Similarity=0.549  Sum_probs=22.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+--+
T Consensus        27 ~~Ge~~~ll-----GpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           27 KDGEFMILL-----GPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             ETTCEEEEE-----CSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEE-----CCCCcHHHHHHHHHHcCC
Confidence            356677888     999999999999998644

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.38  E-value=0.0068  Score=46.00  Aligned_cols=24  Identities=25%  Similarity=0.473  Sum_probs=21.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIK   58 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La   58 (251)
                      .+..+++++     |++|+||||+...|.
T Consensus        16 ~~~~~i~v~-----G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILIL-----GLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEE-----EETTSSHHHHHHHTC
T ss_pred             CCccEEEEE-----CCCCCCHHHHHHHHh
Confidence            578899999     999999999998885

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.38  E-value=0.01  Score=44.17  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ..+++++     |.+|+||||+...|..
T Consensus         3 ~~~i~v~-----G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVF-----GAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEE-----CCTTSSHHHHHHHHHT
T ss_pred             ceEEEEE-----CCCCCCHHHHHHHHHc
Confidence            4678899     9999999999999875

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.36  E-value=0.0086  Score=45.81  Aligned_cols=22  Identities=32%  Similarity=0.540  Sum_probs=19.6

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+++++     |++|+||||+.+.|+.
T Consensus         3 ~kv~iv-----G~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIV-----GNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEE-----SCTTSSHHHHHHHHTC
T ss_pred             eEEEEE-----CCCCCCHHHHHHHHhc
Confidence            468888     9999999999999875

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=95.35  E-value=0.24  Score=46.47  Aligned_cols=24  Identities=21%  Similarity=0.418  Sum_probs=18.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .+..++|+     ||   ||+|+.+.|.+.+.
T Consensus       530 ~~r~vvl~-----GP---~K~tl~~~L~~~~~  553 (721)
T 2xkx_A          530 YARPIIIL-----GP---TKDRANDDLLSEFP  553 (721)
T ss_pred             CCCEEEEE-----CC---CHHHHHHHHHHhCc
Confidence            34557777     88   49999999998763

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.34  E-value=0.0096  Score=45.53  Aligned_cols=25  Identities=20%  Similarity=0.468  Sum_probs=21.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +..+|+++     |.+|+||||+...|...
T Consensus        20 ~~~ki~vv-----G~~~~GKSsli~~l~~~   44 (190)
T 3con_A           20 TEYKLVVV-----GAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEE-----CcCCCCHHHHHHHHHcC
Confidence            45789999     99999999999999764

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.34  E-value=0.021  Score=53.90  Aligned_cols=27  Identities=19%  Similarity=0.292  Sum_probs=23.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..+..++|.     |+||+||||+++.|+..+
T Consensus       205 ~~~~~vlL~-----G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          205 RRKNNPLLV-----GESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSSCEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred             cCCCCeEEE-----cCCCCCHHHHHHHHHHHH
Confidence            356678899     999999999999999987

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.33  E-value=0.0096  Score=46.19  Aligned_cols=27  Identities=11%  Similarity=0.198  Sum_probs=22.7

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+..+|+++     |.+|+||||+...|...
T Consensus        21 ~~~~~ki~vv-----G~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           21 LVRYRKVVIL-----GYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             --CEEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred             CCCcEEEEEE-----CCCCcCHHHHHHHHHhC
Confidence            4577889999     99999999999999764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.32  E-value=0.0099  Score=52.43  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=22.2

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +..|++.     |++|+||||++..|+..+
T Consensus        99 ~~vI~iv-----G~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           99 QNVILLV-----GIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             CCCEEEE-----CCSSSSTTHHHHHHHHHH
T ss_pred             CeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            4578888     999999999999999876

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=95.32  E-value=0.0082  Score=50.04  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=22.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.++|+     ||.||||||+.+.|+-.+
T Consensus        62 ~~Ge~~~i~-----G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           62 ERGQLLAVA-----GSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             CTTCEEEEE-----ESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCcHHHHHHHHhcCC
Confidence            456677788     999999999999997654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.32  E-value=0.0057  Score=51.40  Aligned_cols=27  Identities=37%  Similarity=0.666  Sum_probs=22.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.++|+     ||.||||||+.+.|+..+
T Consensus        78 ~~Ge~vaiv-----G~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           78 MPGQTLALV-----GPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             CTTCEEEEE-----SSSCHHHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCchHHHHHHHHHcCC
Confidence            456677788     999999999999997765

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.32  E-value=0.016  Score=45.13  Aligned_cols=27  Identities=19%  Similarity=0.105  Sum_probs=22.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++...++.     |++||||||.+-.++.++
T Consensus         6 ~~g~i~v~~-----G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            6 DHGWVEVIV-----GPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TCCEEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence            356677777     999999999999988887

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.29  E-value=0.011  Score=49.97  Aligned_cols=32  Identities=16%  Similarity=0.094  Sum_probs=24.2

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhC--Cceech
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLAT   68 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~   68 (251)
                      +..++|.     ||||+||||++..++...|  +.+++.
T Consensus       123 gsviLI~-----GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          123 SGMVIVT-----GKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             SEEEEEE-----CSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CcEEEEE-----cCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            3446777     9999999999999987543  445565

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=95.29  E-value=0.3  Score=40.57  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=18.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .+..++|+     ||   ||+|+.+.|.+.+.
T Consensus        99 ~~RpvVl~-----Gp---~K~tl~~~Ll~~~p  122 (292)
T 3tvt_A           99 YTRPVIIL-----GP---LKDRINDDLISEYP  122 (292)
T ss_dssp             SCCCEEEE-----ST---THHHHHHHHHHHCT
T ss_pred             CCCeEEEe-----CC---CHHHHHHHHHHhCh
Confidence            33448888     88   59999999998874

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.29  E-value=0.0072  Score=51.73  Aligned_cols=27  Identities=22%  Similarity=0.450  Sum_probs=22.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+--+
T Consensus        24 ~~Ge~~~ll-----GpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           24 ESGEYFVIL-----GPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CTTCEEEEE-----CCCTHHHHHHHHHHHTSS
T ss_pred             cCCCEEEEE-----CCCCccHHHHHHHHHcCC
Confidence            456678888     999999999999998644

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.29  E-value=0.011  Score=44.10  Aligned_cols=25  Identities=16%  Similarity=0.175  Sum_probs=21.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ...+++++     |.+|+||||+...|...
T Consensus         5 ~~~~i~v~-----G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLL-----GEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEE-----CCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEE-----CcCCCCHHHHHHHHHcC
Confidence            45688999     99999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.28  E-value=0.014  Score=44.65  Aligned_cols=27  Identities=19%  Similarity=0.252  Sum_probs=22.8

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +.+..+|+++     |.+|+||||+...|...
T Consensus        17 ~~~~~ki~iv-----G~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           17 QGPELKVGIV-----GNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CCCEEEEEEE-----CCTTSCHHHHHHHHHHS
T ss_pred             CCCeeEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            4567889999     99999999999877653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.27  E-value=0.01  Score=46.49  Aligned_cols=27  Identities=11%  Similarity=0.337  Sum_probs=22.4

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .....+++++     |.+|+||||+...|...
T Consensus        25 ~~~~~ki~vv-----G~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           25 QNVKCKIVVV-----GDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             --CEEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred             cceeeEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            3466789999     99999999999999764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.27  E-value=0.0061  Score=47.56  Aligned_cols=26  Identities=15%  Similarity=0.309  Sum_probs=22.0

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ..++.+++++     |++||||||+.+.|..
T Consensus        23 ~~~~~~v~lv-----G~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           23 SDTGIEVAFA-----GRSNAGKSSALNTLTN   48 (210)
T ss_dssp             CSCSEEEEEE-----ECTTSSHHHHHTTTCC
T ss_pred             CCCCcEEEEE-----CCCCCCHHHHHHHHhC
Confidence            3467789999     9999999999988853

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.27  E-value=0.01  Score=44.18  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=21.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +..+++++     |++|+||||+.+.|...
T Consensus         5 ~~~~i~v~-----G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            5 RELKVCLL-----GDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEE-----CcCCCCHHHHHHHHHcC
Confidence            45678999     99999999999998754

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.26  E-value=0.013  Score=55.32  Aligned_cols=23  Identities=26%  Similarity=0.602  Sum_probs=21.6

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++|.     ||||+|||++|+.|++.+
T Consensus       523 ~~Ll~-----Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          523 SFIFL-----GPTGVGKTELARALAESI  545 (758)
T ss_dssp             EEEEE-----SCTTSSHHHHHHHHHHHH
T ss_pred             EEEEE-----CCCCCCHHHHHHHHHHHh
Confidence            58889     999999999999999987

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.25  E-value=0.008  Score=44.75  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=21.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +..+|+++     |.+|+||||+...|..
T Consensus         5 ~~~~i~v~-----G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            5 CQFKLVLL-----GESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEEE-----CSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEE-----CCCCCCHHHHHHHHHc
Confidence            45678999     9999999999999875

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.25  E-value=0.0028  Score=50.99  Aligned_cols=22  Identities=27%  Similarity=0.358  Sum_probs=18.9

Q ss_pred             ecccCCCCCChhHHHHHHHHHh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++|.||.||||||+.+.|+-.+
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhccc
Confidence            4566999999999999998765

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.25  E-value=0.011  Score=44.01  Aligned_cols=22  Identities=32%  Similarity=0.644  Sum_probs=19.1

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIK   58 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La   58 (251)
                      ..+++++     |.+|+||||+.+.|.
T Consensus         2 ~~ki~~v-----G~~~~GKSsli~~l~   23 (166)
T 3q72_A            2 VYKVLLL-----GAPGVGKSALARIFG   23 (166)
T ss_dssp             CCEEEEE-----ESTTSSHHHHHHHHC
T ss_pred             eEEEEEE-----CCCCCCHHHHHHHHc
Confidence            3578888     999999999998884

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.24  E-value=0.012  Score=43.78  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=19.2

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+|+++     |.+|+||||+...|..
T Consensus         3 ~ki~iv-----G~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLV-----GESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEE-----CSTTSSHHHHHHHHHC
T ss_pred             EEEEEE-----CCCCCCHHHHHHHHHh
Confidence            468888     9999999999998864

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.23  E-value=0.014  Score=44.28  Aligned_cols=27  Identities=22%  Similarity=0.432  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +.+..+|+++     |.+|+||||+...|...
T Consensus        15 ~~~~~ki~v~-----G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           15 NLPTYKLVVV-----GDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCCEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEE-----CCCCCCHHHHHHHHHhC
Confidence            3456789999     99999999999998754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.22  E-value=0.009  Score=44.93  Aligned_cols=25  Identities=16%  Similarity=0.207  Sum_probs=21.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+..+++++     |.+|+||||+...|..
T Consensus        12 ~~~~~i~v~-----G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           12 LRKFKLVFL-----GEQSVGKTSLITRFMY   36 (179)
T ss_dssp             CEEEEEEEE-----ESTTSSHHHHHHHHHH
T ss_pred             CcceEEEEE-----CCCCCCHHHHHHHHHc
Confidence            345789999     9999999999999874

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.22  E-value=0.018  Score=46.16  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=21.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +...++++.     |++|+||||++-.++..+
T Consensus         4 ~g~l~I~~~-----~kgGvGKTt~a~~la~~l   30 (228)
T 2r8r_A            4 RGRLKVFLG-----AAPGVGKTYAMLQAAHAQ   30 (228)
T ss_dssp             CCCEEEEEE-----SSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence            345678888     999999999988887665

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.22  E-value=0.011  Score=50.67  Aligned_cols=27  Identities=19%  Similarity=0.153  Sum_probs=23.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..+.|.     |++||||||++..|+-..
T Consensus       129 ~~G~i~~I~-----G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          129 ETQAITEVF-----GEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             ESSEEEEEE-----ESTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEE-----CCCCCCHHHHHHHHHHHh
Confidence            356678888     999999999999999876

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.21  E-value=0.017  Score=46.79  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=21.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+...+++.     |.+|+||||++..|+..+
T Consensus        12 ~~~~i~~~~-----GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           12 MASMIVVFV-----GTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             CCCEEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEEe-----CCCCCCHHHHHHHHHHHH
Confidence            445566666     999999999999999655

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.20  E-value=0.0094  Score=46.28  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=21.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ....+|+++     |.+|+||||+...|..
T Consensus        23 ~~~~ki~v~-----G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           23 DFLFKFLVI-----GSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             CEEEEEEEE-----ESTTSSHHHHHHHHHC
T ss_pred             CcceEEEEE-----CcCCCCHHHHHHHHHh
Confidence            456789999     9999999999998864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.19  E-value=0.012  Score=45.04  Aligned_cols=26  Identities=15%  Similarity=0.152  Sum_probs=22.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+++++     |.+|+||||+...|...
T Consensus        21 ~~~~~i~v~-----G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALA-----GRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEE-----EBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            356789999     99999999999998653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.18  E-value=0.013  Score=44.29  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=21.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+|+++     |.+|+||||+...|...
T Consensus        16 ~~~~ki~v~-----G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           16 LALHKVIMV-----GSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             -CEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEE-----CCCCCCHHHHHHHHhhC
Confidence            356789999     99999999999999754

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.18  E-value=0.0054  Score=52.14  Aligned_cols=26  Identities=35%  Similarity=0.353  Sum_probs=22.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..+++.     |++||||||+.+.|+..+
T Consensus       170 ~g~~v~i~-----G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          170 IGKNVIVC-----GGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HTCCEEEE-----ESTTSCHHHHHHHGGGGS
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            45578899     999999999999998876

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.18  E-value=0.015  Score=45.00  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=22.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+|+++     |.+|+||||+...|...
T Consensus        12 ~~~~ki~v~-----G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           12 LALHKVIMV-----GSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CCEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEE-----CCCCCCHHHHHHHHHhC
Confidence            456789999     99999999999998754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.16  E-value=0.012  Score=51.26  Aligned_cols=26  Identities=35%  Similarity=0.477  Sum_probs=22.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++-.+.|+     ||.||||||+.+.|+--
T Consensus        45 ~~Ge~~~ll-----GpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           45 SPGQRVGLL-----GRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             CTTCEEEEE-----ESTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEE-----CCCCChHHHHHHHHhCC
Confidence            466678888     99999999999999764

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=95.16  E-value=0.0091  Score=54.62  Aligned_cols=25  Identities=32%  Similarity=0.602  Sum_probs=21.3

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +..+++.     |+||+||||++..+...+
T Consensus       204 ~~~~~I~-----G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          204 HRLVVLT-----GGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             CSEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEE-----cCCCCCHHHHHHHHHHHH
Confidence            4567888     999999999999998765

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.15  E-value=0.015  Score=43.72  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=21.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +..+++++     |++|+||||+...|...
T Consensus         6 ~~~~i~v~-----G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            6 SLFKVILL-----GDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEE-----CCCCCCHHHHHHHHHcC
Confidence            45678999     99999999999998653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.15  E-value=0.013  Score=44.99  Aligned_cols=27  Identities=37%  Similarity=0.402  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++..+|+++     |.+|+||||+...|...
T Consensus        19 ~~~~~ki~v~-----G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           19 SKEEMELTLV-----GLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             CCEEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             CCCccEEEEE-----CCCCCCHHHHHHHHHcC
Confidence            3457889999     99999999999999753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.12  E-value=0.013  Score=43.69  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.2

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ..+++++     |++|+||||+...|..
T Consensus         3 ~~~i~v~-----G~~~~GKssli~~l~~   25 (170)
T 1g16_A            3 IMKILLI-----GDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEE-----ESTTSSHHHHHHHHHH
T ss_pred             ceEEEEE-----CcCCCCHHHHHHHHHh
Confidence            4578888     9999999999999875

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.11  E-value=0.013  Score=44.21  Aligned_cols=26  Identities=23%  Similarity=0.445  Sum_probs=21.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+++++     |.+|+||||+...|...
T Consensus        10 ~~~~ki~v~-----G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           10 SINAKLVLL-----GDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             CEEEEEEEE-----CCTTSCHHHHHHHHHHC
T ss_pred             ccceEEEEE-----CcCCCCHHHHHHHHHcC
Confidence            345789999     99999999999988653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.11  E-value=0.015  Score=44.30  Aligned_cols=26  Identities=27%  Similarity=0.426  Sum_probs=22.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+++++     |.+|+||||+...|...
T Consensus        16 ~~~~~i~v~-----G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLML-----GLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEE-----CSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            467899999     99999999999998653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.10  E-value=0.013  Score=45.20  Aligned_cols=26  Identities=23%  Similarity=0.497  Sum_probs=20.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+++++     |++|+||||+...|...
T Consensus        21 ~~~~ki~~v-----G~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           21 NKHGKLLFL-----GLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             ---CEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            355689999     99999999999999763

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.09  E-value=0.015  Score=52.17  Aligned_cols=26  Identities=27%  Similarity=0.471  Sum_probs=21.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..|++.     |++||||||++..|+..+
T Consensus       100 ~~~vI~iv-----G~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W          100 KQNVIMFV-----GLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             --EEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            45678888     999999999999999766

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.08  E-value=0.013  Score=44.58  Aligned_cols=24  Identities=21%  Similarity=0.245  Sum_probs=21.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ...+|+++     |.+|+||||+...|..
T Consensus        10 ~~~ki~v~-----G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           10 YLIKFLAL-----GDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEEEE-----CSTTSSHHHHHHHHHH
T ss_pred             eeEEEEEE-----CCCCCCHHHHHHHHhc
Confidence            46789999     9999999999999975

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=95.06  E-value=0.011  Score=54.29  Aligned_cols=26  Identities=27%  Similarity=0.571  Sum_probs=22.9

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      +..++|+     ||+|+||||+++.|+..+.
T Consensus        60 g~~vll~-----Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           60 KRHVLLI-----GEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             TCCEEEE-----CCTTSSHHHHHHHHHHTSC
T ss_pred             CCEEEEE-----eCCCCCHHHHHHHHhccCC
Confidence            3468888     9999999999999999874

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.05  E-value=0.0091  Score=53.33  Aligned_cols=24  Identities=25%  Similarity=0.202  Sum_probs=20.9

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.+.|+     ||.||||||+.+.|+--+
T Consensus        30 e~~~li-----G~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           30 LVTTLS-----GGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             SEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEE-----CCCCCcHHHHHHHHhcCC
Confidence            567777     999999999999998765

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=95.04  E-value=0.022  Score=47.77  Aligned_cols=39  Identities=18%  Similarity=0.104  Sum_probs=28.2

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++++.+.+.+.. +. ++.++|.     ||||+||||+++.|++.+
T Consensus         4 ~~~~~L~~~i~~-~~-~~~~Lf~-----Gp~G~GKtt~a~~la~~~   42 (305)
T 2gno_A            4 DQLETLKRIIEK-SE-GISILIN-----GEDLSYPREVSLELPEYV   42 (305)
T ss_dssp             CHHHHHHHHHHT-CS-SEEEEEE-----CSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-CC-CcEEEEE-----CCCCCCHHHHHHHHHHhC
Confidence            344444444432 23 7789999     999999999999999863

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.04  E-value=0.015  Score=44.48  Aligned_cols=26  Identities=27%  Similarity=0.316  Sum_probs=22.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +..+|+++     |.+|+||||+.+.|...+
T Consensus        13 ~~~ki~vv-----G~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           13 INFKIVYY-----GPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEEE-----CSTTSSHHHHHHHHHHTS
T ss_pred             cccEEEEE-----CCCCCCHHHHHHHHHhhc
Confidence            46789999     999999999998887654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.04  E-value=0.014  Score=44.68  Aligned_cols=27  Identities=22%  Similarity=0.271  Sum_probs=22.7

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+..+|+++     |.+|+||||+...|...
T Consensus        22 ~~~~~ki~v~-----G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           22 YNFVFKVVLI-----GESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             CSEEEEEEEE-----SSTTSSHHHHHHHHHHS
T ss_pred             cCcceEEEEE-----CcCCCCHHHHHHHHhcC
Confidence            3456789999     99999999999998763

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.03  E-value=0.014  Score=43.99  Aligned_cols=26  Identities=27%  Similarity=0.380  Sum_probs=22.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+++++     |.+|+||||+...|...
T Consensus         8 ~~~~~i~v~-----G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            8 DVAFKVMLV-----GDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             SEEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEE-----CcCCCCHHHHHHHHHhC
Confidence            356789999     99999999999998654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.03  E-value=0.017  Score=44.66  Aligned_cols=27  Identities=19%  Similarity=0.271  Sum_probs=21.7

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +.+..+|+++     |.+|+||||+...|...
T Consensus        25 ~~~~~ki~v~-----G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           25 SQKAYKIVLA-----GDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             ---CEEEEEE-----SSTTSSHHHHHHHHHHC
T ss_pred             cCCCeEEEEE-----CcCCCCHHHHHHHHHhC
Confidence            3467889999     99999999999998753

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.03  E-value=0.015  Score=45.31  Aligned_cols=28  Identities=11%  Similarity=0.063  Sum_probs=23.5

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ...+..+|+++     |.+|+||||+...|...
T Consensus         5 ~~~~~~ki~i~-----G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            5 SVSKFIKCVTV-----GDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             SCCCEEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred             CcCceEEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            34566789999     99999999999998753

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.00  E-value=0.0075  Score=51.74  Aligned_cols=27  Identities=33%  Similarity=0.496  Sum_probs=22.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+--+
T Consensus        29 ~~Ge~~~ll-----GpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           29 ENGERFGIL-----GPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CTTCEEEEE-----CSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEE-----CCCCCcHHHHHHHHhCCC
Confidence            466678888     999999999999998644

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.00  E-value=0.015  Score=46.62  Aligned_cols=26  Identities=27%  Similarity=0.544  Sum_probs=22.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+|+++     |.+|+||||+...|...
T Consensus        27 ~~~~~i~lv-----G~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           27 NSQLRIVLV-----GKTGAGKSATGNSILGR   52 (239)
T ss_dssp             -CEEEEEEE-----CCTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEE-----CCCCCCHHHHHHHHcCC
Confidence            456789999     99999999999998653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.99  E-value=0.01  Score=45.56  Aligned_cols=25  Identities=12%  Similarity=0.131  Sum_probs=21.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +..+|+++     |.+|+||||+...|...
T Consensus        17 ~~~ki~v~-----G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           17 LMLKCVVV-----GDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEE-----ECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            45688999     99999999999999764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.99  E-value=0.015  Score=44.76  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=22.6

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ..+..+++++     |.+|+||||+...|..
T Consensus        26 ~~~~~ki~v~-----G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           26 GKKQMRILMV-----GLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TTSCEEEEEE-----ESTTSSHHHHHHHHCS
T ss_pred             cCCccEEEEE-----CCCCCCHHHHHHHHHh
Confidence            4567899999     9999999999998853

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=94.99  E-value=0.015  Score=43.94  Aligned_cols=25  Identities=12%  Similarity=0.146  Sum_probs=21.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +..+++++     |.+|+||||+...|...
T Consensus         4 ~~~~i~~~-----G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            4 QAIKCVVV-----GDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEE-----CCCCCCHHHHHHHHHcC
Confidence            45678999     99999999999988753

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=94.98  E-value=0.016  Score=49.75  Aligned_cols=26  Identities=23%  Similarity=0.198  Sum_probs=22.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..+.|.     |||||||||++..++...
T Consensus        60 ~G~i~~I~-----GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           60 RGRIVEIF-----GQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             TTEEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            56677888     999999999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.98  E-value=0.019  Score=44.13  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=22.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ....+|+++     |.+|+||||+...|..
T Consensus         6 ~~~~ki~vv-----G~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            6 SNDYRVVVF-----GAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCEEEEEE-----ECTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEE-----CCCCCcHHHHHHHHHc
Confidence            456789999     9999999999999976

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.97  E-value=0.017  Score=44.17  Aligned_cols=25  Identities=20%  Similarity=0.183  Sum_probs=21.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+..+|+++     |.+|+||||+...|..
T Consensus        18 ~~~~ki~v~-----G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           18 SRIFKIIVI-----GDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             -CEEEEEEE-----CCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEE-----CCCCCCHHHHHHHHHc
Confidence            456789999     9999999999998865

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=94.97  E-value=0.015  Score=44.34  Aligned_cols=25  Identities=12%  Similarity=0.235  Sum_probs=21.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..++++++     |.+|+||||+...|...
T Consensus        22 ~~~~i~v~-----G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           22 LKGEVAFV-----GRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TTCEEEEE-----EBTTSSHHHHHHHHHTS
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHcC
Confidence            45689999     99999999999998654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.94  E-value=0.0094  Score=53.72  Aligned_cols=26  Identities=27%  Similarity=0.193  Sum_probs=22.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+..+++.     ||+||||||+.+.|...+
T Consensus       259 ~g~~i~I~-----GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          259 HKFSAIVV-----GETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TTCCEEEE-----ESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHHhhC
Confidence            45568888     999999999999998766

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=94.94  E-value=0.016  Score=43.49  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=21.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ...+++++     |.+|+||||+...|...
T Consensus        14 ~~~~i~v~-----G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           14 YIFKYIII-----GDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEE-----CCCCCCHHHHHHHHHcC
Confidence            45789999     99999999999999764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=94.93  E-value=0.014  Score=44.35  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=21.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +..+|+++     |.+|+||||+...|...
T Consensus         9 ~~~ki~v~-----G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            9 FLFKFLVI-----GNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEE-----CCCCCCHHHHHHHHHcC
Confidence            45789999     99999999999998754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.93  E-value=0.017  Score=44.10  Aligned_cols=26  Identities=19%  Similarity=0.314  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ..+..+++++     |.+|+||||+...|..
T Consensus        13 ~~~~~~i~v~-----G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           13 NHQEHKVIIV-----GLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TTSCEEEEEE-----ESTTSSHHHHHHHHHT
T ss_pred             CCCccEEEEE-----CCCCCCHHHHHHHHhc
Confidence            3567899999     9999999999999974

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=94.92  E-value=0.015  Score=47.60  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=20.8

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++++++     |++||||||+...|...
T Consensus         3 ~~~i~lv-----G~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALV-----GNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEE-----ECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            4578888     99999999999999654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.91  E-value=0.018  Score=44.13  Aligned_cols=26  Identities=19%  Similarity=0.342  Sum_probs=21.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+|+++     |.+|+||||+...|...
T Consensus        19 ~~~~ki~vv-----G~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           19 PLEVNLAIL-----GRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             -CEEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEE-----CCCCCcHHHHHHHHHhC
Confidence            456789999     99999999999988754

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=94.91  E-value=0.021  Score=47.66  Aligned_cols=26  Identities=31%  Similarity=0.410  Sum_probs=22.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..+++.     |+.|+||||++..|+..+
T Consensus        97 ~~~~i~i~-----g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLV-----GLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEE-----CCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            45567777     999999999999998876

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=94.91  E-value=0.02  Score=42.45  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.2

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +++++     |.+|+||||+...|...
T Consensus         2 ki~~~-----G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMV-----GLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEE-----CSTTSSHHHHHHHHHHH
T ss_pred             EEEEE-----CCCCCCHHHHHHHHHcC
Confidence            57888     99999999999999654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=94.90  E-value=0.019  Score=45.60  Aligned_cols=25  Identities=32%  Similarity=0.513  Sum_probs=22.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+..+|+++     |.+|+||||+...|..
T Consensus        27 ~~~~kI~vv-----G~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           27 PHKKTIILS-----GAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             TTSEEEEEE-----CSTTSSHHHHHHHHTT
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHhC
Confidence            457889999     9999999999998865

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=94.87  E-value=0.018  Score=44.97  Aligned_cols=26  Identities=15%  Similarity=0.199  Sum_probs=21.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+++++     |.+|+||||+...|...
T Consensus         5 ~~~~ki~vv-----G~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            5 SSQRAVLFV-----GLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             ---CEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            356789999     99999999999999764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=94.83  E-value=0.017  Score=44.31  Aligned_cols=26  Identities=31%  Similarity=0.367  Sum_probs=21.5

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +...++|+++     |.+|+||||+...|..
T Consensus        14 ~~~~~ki~v~-----G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           14 SKTKLQVVMC-----GLDNSGKTTIINQVKP   39 (199)
T ss_dssp             --CEEEEEEE-----CCTTSCHHHHHHHHSC
T ss_pred             CCCCcEEEEE-----CCCCCCHHHHHHHHhc
Confidence            4567889999     9999999999998854

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.82  E-value=0.017  Score=44.43  Aligned_cols=27  Identities=15%  Similarity=0.250  Sum_probs=22.8

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+..+++++     |.+|+||||+...|...
T Consensus        20 ~~~~~ki~~v-----G~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           20 GKKALKIVVV-----GDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             -CEEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             cceeeEEEEE-----CcCCCCHHHHHHHHhcC
Confidence            3456889999     99999999999998764

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.82  E-value=0.015  Score=55.61  Aligned_cols=24  Identities=21%  Similarity=0.516  Sum_probs=21.9

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..++|.     ||||+|||++|+.|++.+
T Consensus       589 ~~vLl~-----Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          589 GSFLFL-----GPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             EEEEEB-----SCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEE-----CCCCCCHHHHHHHHHHHh
Confidence            368888     999999999999999988

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.79  E-value=0.019  Score=49.32  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=20.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ++..++|+     |++||||||+.+.|.-.
T Consensus       214 ~G~~~~lv-----G~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          214 TGRISIFA-----GQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             TTSEEEEE-----CCTTSSHHHHHHHHHCC
T ss_pred             CCCEEEEE-----CCCCccHHHHHHHHhcc
Confidence            34568888     99999999999999754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.78  E-value=0.022  Score=50.05  Aligned_cols=32  Identities=16%  Similarity=0.209  Sum_probs=23.4

Q ss_pred             HhhccCCCCeE--EEEEeecccCCCCCChhHHHHHHHHH
Q 025529           24 RMKCASKPDKR--LILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        24 ~~~~~~~~~~~--i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+...-.++-.  ++|+     |++||||||+.+.|+..
T Consensus        32 ~vsl~i~~Gei~~vaLv-----G~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           32 LVNKSVSQGFCFNILCV-----GETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HHHHSCC-CCEEEEEEE-----CSTTSSSHHHHHHHHTS
T ss_pred             CCceEecCCCeeEEEEE-----CCCCCCHHHHHHHHhCc
Confidence            33333345555  8899     99999999999999654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=94.74  E-value=0.021  Score=44.05  Aligned_cols=26  Identities=15%  Similarity=0.197  Sum_probs=21.1

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +.+..+|+++     |.+|+||||+...|..
T Consensus        17 ~~~~~ki~~~-----G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           17 EGRGVKCVLV-----GDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             ---CEEEEEE-----CSTTSSHHHHHHHHHC
T ss_pred             CCcceEEEEE-----CCCCCCHHHHHHHHHh
Confidence            4567889999     9999999999998864

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=94.73  E-value=0.024  Score=45.32  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=20.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ++..+++.     |+||+|||++|..++.
T Consensus        29 ~G~l~~i~-----G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           29 EGTTVLLT-----GGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             TTCEEEEE-----CCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEE-----eCCCCCHHHHHHHHHH
Confidence            56678888     9999999999988754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.72  E-value=0.019  Score=52.14  Aligned_cols=29  Identities=31%  Similarity=0.397  Sum_probs=24.8

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+.++-.+.++     ||.||||||+.+.|+-.+
T Consensus        21 ~~~~Gei~gLi-----GpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           21 TPKNNTILGVL-----GKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CCCTTEEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCCEEEEE-----CCCCCcHHHHHHHHhcCC
Confidence            45677889999     999999999999997654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.71  E-value=0.01  Score=53.82  Aligned_cols=22  Identities=36%  Similarity=0.542  Sum_probs=17.9

Q ss_pred             ecccCCCCCChhHHHHHHHHHh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++|.|+.||||||+.+.|+-.+
T Consensus       297 ~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          297 IGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            3444999999999999997654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=94.70  E-value=0.016  Score=44.05  Aligned_cols=27  Identities=19%  Similarity=0.302  Sum_probs=21.7

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +.+..+++++     |.+|+||||+...|...
T Consensus        18 ~~~~~~i~v~-----G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           18 GSQEHKVIIV-----GLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             ---CEEEEEE-----EETTSSHHHHHHHHHTT
T ss_pred             CCceeEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            3467889999     99999999999999753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=94.70  E-value=0.018  Score=45.14  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=22.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+..+|+++     |.+|+||||+...|..
T Consensus        32 ~~~~ki~vv-----G~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           32 VRSVKVVLV-----GDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CCEEEEEEE-----ECTTSSHHHHHHHHHC
T ss_pred             cceEEEEEE-----CcCCCCHHHHHHHHHc
Confidence            456789999     9999999999999864

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=94.70  E-value=0.017  Score=44.77  Aligned_cols=25  Identities=32%  Similarity=0.545  Sum_probs=21.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+..+++++     |++|+||||+.+.|..
T Consensus        23 ~~~~ki~lv-----G~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           23 KKTGKLVFL-----GLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             TCCEEEEEE-----EETTSSHHHHHHHHSC
T ss_pred             CCCcEEEEE-----CCCCCCHHHHHHHHhc
Confidence            456789999     9999999999998853

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=94.70  E-value=0.018  Score=49.68  Aligned_cols=28  Identities=25%  Similarity=0.251  Sum_probs=21.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+..+++   +|+|++|+||||+++.+++.+
T Consensus        49 ~~~~~li---~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIY---GSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEE---ECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEE---eCcCcCCCCHHHHHHHHHHHH
Confidence            4445666   123999999999999998875

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=94.69  E-value=0.02  Score=46.42  Aligned_cols=26  Identities=31%  Similarity=0.611  Sum_probs=22.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+|+++     |.+|+||||+...|...
T Consensus        20 ~~~~~I~lv-----G~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           20 RSELRIILV-----GKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             -CCEEEEEE-----ECTTSCHHHHHHHHHTS
T ss_pred             CCceEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            356789999     99999999999999754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=94.68  E-value=0.031  Score=45.76  Aligned_cols=29  Identities=21%  Similarity=0.314  Sum_probs=23.9

Q ss_pred             ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ....+..+|+++     |.+|+||||+...|...
T Consensus        34 ~~~~~~~~I~vv-----G~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           34 QEDVNSLTILVM-----GKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             HTTCCEEEEEEE-----ESTTSSHHHHHHHHHTS
T ss_pred             hcCCCCeEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            334567899999     99999999999998753

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.68  E-value=0.032  Score=46.91  Aligned_cols=33  Identities=15%  Similarity=0.167  Sum_probs=27.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      .+.-++|.     |++|+||||++..|.++ |+.+++-|
T Consensus       143 ~g~~vl~~-----G~sG~GKSt~a~~l~~~-g~~lv~dD  175 (314)
T 1ko7_A          143 YGVGVLIT-----GDSGIGKSETALELIKR-GHRLVADD  175 (314)
T ss_dssp             TTEEEEEE-----ESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred             CCEEEEEE-----eCCCCCHHHHHHHHHhc-CCceecCC
Confidence            35668888     99999999999999885 87777554

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=94.66  E-value=0.026  Score=49.75  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=21.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..|++.     |++|+||||++..|+..+
T Consensus        99 ~~~vI~iv-----G~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           99 PPAVVLMA-----GLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSEEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            45677777     999999999999998666

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.65  E-value=0.022  Score=47.60  Aligned_cols=25  Identities=28%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+..++++     |++||||||+.+.|. ..
T Consensus       164 ~G~i~~l~-----G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          164 EGFICILA-----GPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TTCEEEEE-----CSTTSSHHHHHHHHH-SC
T ss_pred             cCcEEEEE-----CCCCCCHHHHHHHHH-Hh
Confidence            45577888     999999999999998 54

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=94.65  E-value=0.017  Score=43.95  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=19.5

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+++++     |.+|+||||+...|...
T Consensus         2 ~ki~v~-----G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFA-----GRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEE-----EBTTSSHHHHHHHHHSC
T ss_pred             cEEEEE-----CCCCCCHHHHHHHHhCc
Confidence            367888     99999999999998753

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=94.64  E-value=0.021  Score=48.88  Aligned_cols=26  Identities=23%  Similarity=0.266  Sum_probs=22.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..+.|.     |+|||||||++..++...
T Consensus        60 ~G~iv~I~-----G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           60 RGRVIEIY-----GPESSGKTTVALHAVANA   85 (349)
T ss_dssp             TTSEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            56678888     999999999999988654

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.61  E-value=0.032  Score=49.25  Aligned_cols=36  Identities=14%  Similarity=0.160  Sum_probs=29.4

Q ss_pred             HHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           21 LLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        21 ~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      +++.+ ..-.++-++.|+     ||+||||||+.+.|+..+.
T Consensus       147 vld~v-l~i~~Gq~~~Iv-----G~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          147 AINAL-LTVGRGQRMGLF-----AGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             HHHHH-SCCBTTCEEEEE-----ECTTSSHHHHHHHHHHHSC
T ss_pred             EEeee-EEecCCCEEEEE-----CCCCCCHHHHHHHHhcccC
Confidence            55556 444577789999     9999999999999999874

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=94.61  E-value=0.017  Score=44.11  Aligned_cols=25  Identities=28%  Similarity=0.258  Sum_probs=21.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ...+++++     |.+|+||||+...|...
T Consensus        21 ~~~ki~vv-----G~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           21 YMFKLLLI-----GNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEE-----CCCCCCHHHHHHHHHcC
Confidence            45689999     99999999999998754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.61  E-value=0.024  Score=43.34  Aligned_cols=25  Identities=32%  Similarity=0.379  Sum_probs=21.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ...+|+++     |.+|+||||+...|...
T Consensus        15 ~~~ki~v~-----G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           15 YLFKLLLI-----GDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEE-----CcCCCCHHHHHHHHHcC
Confidence            45789999     99999999999998753

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=94.60  E-value=0.021  Score=49.97  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=21.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+.|+     |++||||||+.+.|.-.
T Consensus        68 ~~~~valv-----G~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           68 SVLNVAVT-----GETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CCEEEEEE-----ECTTSSHHHHHHHHHTC
T ss_pred             CCeEEEEE-----CCCCCcHHHHHHHHhCC
Confidence            34478889     99999999999999763

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=94.60  E-value=0.019  Score=50.14  Aligned_cols=24  Identities=17%  Similarity=0.116  Sum_probs=20.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ++..+.|.     |+|||||||++..|+-
T Consensus       177 ~Gei~~I~-----G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          177 TGSITELF-----GEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             TTSEEEEE-----ESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEE-----cCCCCChHHHHHHHHH
Confidence            56678888     9999999999998763

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=94.60  E-value=0.015  Score=44.93  Aligned_cols=28  Identities=21%  Similarity=0.387  Sum_probs=21.3

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+.+..+|+++     |.+|+||||+.+.+...
T Consensus        16 ~~~~~~ki~~v-----G~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           16 FQGSKPRILLM-----GLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             ----CCEEEEE-----ESTTSSHHHHHHHHHSC
T ss_pred             ccCcceEEEEE-----CCCCCCHHHHHHHHHhc
Confidence            34567899999     99999999999877654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.59  E-value=0.012  Score=53.16  Aligned_cols=27  Identities=19%  Similarity=0.260  Sum_probs=22.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..+.+.     |++||||||+++.|+...
T Consensus       279 ~~G~i~~i~-----G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          279 FKDSIILAT-----GATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             ESSCEEEEE-----ECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEE-----eCCCCCHHHHHHHHHHHH
Confidence            466678888     999999999999998654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.59  E-value=0.022  Score=43.60  Aligned_cols=26  Identities=27%  Similarity=0.304  Sum_probs=21.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+|+++     |.+|+||||+...|...
T Consensus        19 ~~~~ki~v~-----G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           19 SYLFKYIII-----GDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             CEEEEEEEE-----SSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEE-----CcCCCCHHHHHHHHhcC
Confidence            345679999     99999999999998753

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.59  E-value=0.019  Score=44.82  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=22.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ....+|+++     |.+|+||||+...|...
T Consensus        24 ~~~~ki~lv-----G~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           24 DFLFKIVLI-----GNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             SEEEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEE-----CcCCCCHHHHHHHHHhC
Confidence            345789999     99999999999998754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=94.58  E-value=0.016  Score=44.33  Aligned_cols=26  Identities=23%  Similarity=0.448  Sum_probs=22.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+|+++     |.+|+||||+...|...
T Consensus        13 ~~~~~i~v~-----G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           13 LTTLKILII-----GESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEE-----CCCCCCHHHHHHHHHcC
Confidence            356789999     99999999999999654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.58  E-value=0.023  Score=43.54  Aligned_cols=26  Identities=23%  Similarity=0.208  Sum_probs=22.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ...+|+++     |.+|+||||+...|....
T Consensus        22 ~~~ki~v~-----G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           22 YMFKLLII-----GNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             ECEEEEEE-----ESTTSSHHHHHHHHHHHT
T ss_pred             eeeEEEEE-----CCCCcCHHHHHHHHhcCC
Confidence            45789999     999999999999997653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=94.55  E-value=0.019  Score=46.83  Aligned_cols=25  Identities=20%  Similarity=0.223  Sum_probs=21.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+..+++++     |.||+||||+...|..
T Consensus         3 ~~~~kI~lv-----G~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            3 LHMVKVALA-----GCPNVGKTSLFNALTG   27 (258)
T ss_dssp             CEEEEEEEE-----CCTTSSHHHHHHHHHT
T ss_pred             CCceEEEEE-----CCCCCCHHHHHHHHHC
Confidence            345678999     9999999999999975

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=94.54  E-value=0.026  Score=48.05  Aligned_cols=26  Identities=15%  Similarity=-0.010  Sum_probs=22.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++..+.|.     |+|||||||++..++..
T Consensus       120 ~~G~i~~I~-----G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          120 ESMAITEAF-----GEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             CSSEEEEEE-----CCTTCTHHHHHHHHHHH
T ss_pred             CCCeEEEEE-----CCCCCCHHHHHHHHHHH
Confidence            356678888     99999999999999886

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=94.54  E-value=0.039  Score=44.93  Aligned_cols=35  Identities=17%  Similarity=0.359  Sum_probs=26.7

Q ss_pred             HHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           21 LLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        21 ~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+.+.....+..+|+++     |.+|+||||+...|...
T Consensus        25 ~~~~~~~~~~~~~~I~lv-----G~~g~GKSSLin~l~~~   59 (262)
T 3def_A           25 FFGKLKQKDMNSMTVLVL-----GKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             HHHHHHHTTCCEEEEEEE-----ECTTSSHHHHHHHHHTS
T ss_pred             HHHHHhhccCCCcEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            334444444567899999     99999999999999753

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.54  E-value=0.028  Score=48.01  Aligned_cols=36  Identities=17%  Similarity=0.208  Sum_probs=28.8

Q ss_pred             HHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           21 LLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        21 ~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      +++.+ ..-.++-++.|+     |++||||||+.+.|+....
T Consensus        61 ald~l-l~i~~Gq~~gIi-----G~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           61 AIDGL-LTCGIGQRIGIF-----AGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             HHHHH-SCEETTCEEEEE-----ECTTSSHHHHHHHHHHHSC
T ss_pred             EEEee-eeecCCCEEEEE-----CCCCCCHHHHHHHHhcCCC
Confidence            45555 333477789999     9999999999999999874

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.52  E-value=0.023  Score=44.17  Aligned_cols=26  Identities=12%  Similarity=0.127  Sum_probs=21.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+|+++     |.+|+||||+...|...
T Consensus        28 ~~~~ki~vv-----G~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           28 GQAIKCVVV-----GDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             --CEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred             CCeEEEEEE-----CcCCCCHHHHHHHHHhC
Confidence            467899999     99999999999988753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.49  E-value=0.018  Score=44.17  Aligned_cols=26  Identities=19%  Similarity=0.330  Sum_probs=22.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+|+++     |.+|+||||+...|...
T Consensus        21 ~~~~ki~vv-----G~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           21 IRELKVCLL-----GDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             CEEEEEEEE-----ECTTSSHHHHHHHHHHC
T ss_pred             CCceEEEEE-----CcCCCCHHHHHHHHhcC
Confidence            356789999     99999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.48  E-value=0.015  Score=53.49  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=18.9

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+.|+     ||.||||||+.+.|+-.+
T Consensus       380 iv~ii-----G~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          380 ILVMM-----GENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEEE-----SCTTSSHHHHHHHHHTSS
T ss_pred             EEEEE-----CCCCCcHHHHHHHHhcCC
Confidence            35556     999999999999997644

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=94.47  E-value=0.018  Score=44.06  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=21.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+|+++     |.+|+||||+...|...
T Consensus        19 ~~~~ki~v~-----G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           19 SKEVHVLCL-----GLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             --CEEEEEE-----ECTTSSHHHHHHHTSCG
T ss_pred             CCccEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            467889999     99999999999988654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.46  E-value=0.028  Score=43.63  Aligned_cols=26  Identities=23%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ....+|+++     |.+|+||||+...|...
T Consensus        18 ~~~~~i~v~-----G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           18 DSIMKILLI-----GDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             --CEEEEEE-----CSTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEE-----CCCCCCHHHHHHHHHhC
Confidence            356789999     99999999999998753

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=94.39  E-value=0.025  Score=44.59  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=22.6

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +....+|+++     |.+|+||||+...|...
T Consensus        10 ~~~~~ki~v~-----G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           10 YDLLFKIVLI-----GDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             CCEEEEEEEE-----SCTTSSHHHHHHHHHHC
T ss_pred             CCeeeEEEEE-----CcCCCCHHHHHHHHhcC
Confidence            3455789999     99999999999998763

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=94.36  E-value=0.023  Score=44.10  Aligned_cols=25  Identities=32%  Similarity=0.383  Sum_probs=21.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ...+|+++     |.+|+||||+...|...
T Consensus         7 ~~~ki~v~-----G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            7 YLFKLLLI-----GNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEE-----ESTTSSHHHHHHHHHHC
T ss_pred             cceEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            45689999     99999999999998753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.32  E-value=0.029  Score=43.35  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=20.7

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+|+++     |.+|+||||+...|...
T Consensus         8 ~~ki~v~-----G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            8 MFKILII-----GNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEE-----CSTTSSHHHHHHHHHTC
T ss_pred             eeEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            4678999     99999999999998653

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=94.32  E-value=0.033  Score=48.96  Aligned_cols=26  Identities=31%  Similarity=0.410  Sum_probs=22.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..+++.     |+.||||||++..|+..+
T Consensus        97 ~~~vi~i~-----G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLV-----GLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            45667777     999999999999999877

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.31  E-value=0.028  Score=51.00  Aligned_cols=27  Identities=30%  Similarity=0.533  Sum_probs=23.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     |+.||||||+.+.|+-.+
T Consensus        45 ~~Ge~~~Lv-----G~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIV-----GPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            466788888     999999999999998654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=94.26  E-value=0.027  Score=47.03  Aligned_cols=25  Identities=24%  Similarity=0.262  Sum_probs=20.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..++++     |++||||||+.+.|+..
T Consensus       168 ~geiv~l~-----G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          168 KGKISTMA-----GLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             SSSEEEEE-----CSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEE-----CCCCCcHHHHHHHhccc
Confidence            34567888     99999999999999643

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=94.25  E-value=0.019  Score=43.81  Aligned_cols=24  Identities=17%  Similarity=0.308  Sum_probs=21.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIK   58 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La   58 (251)
                      .+..+++++     |.+|+||||+...|.
T Consensus        20 ~~~~~i~v~-----G~~~~GKssli~~l~   43 (189)
T 2x77_A           20 DRKIRVLML-----GLDNAGKTSILYRLH   43 (189)
T ss_dssp             TSCEEEEEE-----EETTSSHHHHHHHTC
T ss_pred             CCceEEEEE-----CCCCCCHHHHHHHHH
Confidence            567899999     999999999999884

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=94.23  E-value=0.021  Score=52.59  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +..+++.     |+||+||||++..+...+
T Consensus       164 ~~~~vi~-----G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          164 RRISVIS-----GGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             BSEEEEE-----CCTTSTHHHHHHHHHHHH
T ss_pred             CCCEEEE-----eCCCCCHHHHHHHHHHHH
Confidence            4578888     999999999888776554

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.23  E-value=0.023  Score=43.99  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=20.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ...+++++     |.+|+||||+...|..
T Consensus        22 ~~~ki~vv-----G~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           22 GIFKVMLV-----GESGVGKSTLAGTFGG   45 (195)
T ss_dssp             CEEEEEEE-----CSTTSSHHHHHHHTCC
T ss_pred             cEEEEEEE-----CCCCCCHHHHHHHHHh
Confidence            45689999     9999999999998853

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=94.22  E-value=0.23  Score=41.58  Aligned_cols=89  Identities=16%  Similarity=0.132  Sum_probs=45.7

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCce-echhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH-LATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK  111 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~-i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~  111 (251)
                      .-++|+     ||   ||+|+.+.|.+.+.-.| +.+.  +.+          .    ..++..++-..+.+++.     
T Consensus       146 RPvVl~-----GP---~k~~l~~~L~~~~P~~F~~~v~--~~r----------~----i~~~~fis~~~V~~vl~-----  196 (308)
T 3kfv_A          146 RPVVIL-----GP---VADIAMQKLTAEMPDQFEIAET--VSR----------T----DSPSKIIKLDTVRVIAE-----  196 (308)
T ss_dssp             CCEEEE-----ST---THHHHHHHHHHHCTTTEEECCC--C----------------------CCCHHHHHHHHH-----
T ss_pred             CeEEEe-----Cc---cHHHHHHHHHHhCccccccccc--ccc----------c----ccCCCeecHHHHHHHHH-----
Confidence            348888     99   79999999988773221 1211  001          1    34566666655555553     


Q ss_pred             CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecC-HHHHHHH
Q 025529          112 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID-DAVLEER  160 (251)
Q Consensus       112 ~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~-~e~~~~R  160 (251)
                        .++.+|+|--+....+..       .....| ++||+..| .+++.+|
T Consensus       197 --~Gk~~ILDId~QGa~~lk-------~~~~~p-i~IFI~PPS~eeL~~r  236 (308)
T 3kfv_A          197 --KDKHALLDVTPSAIERLN-------YVQYYP-IVVFFIPESRPALKAL  236 (308)
T ss_dssp             --TTCEEEECCCHHHHHHHH-------HTTCCC-EEEEEEESCHHHHHHH
T ss_pred             --CCCcEEEEECHHHHHHHH-------hcCCCC-EEEEEeCCCHHHHHHH
Confidence              245688885443332222       122445 55556554 4566654

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=94.22  E-value=0.023  Score=47.72  Aligned_cols=33  Identities=15%  Similarity=0.134  Sum_probs=26.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      .+.-++|.     |++|+||||+|-.|.+ .|+.+++-|
T Consensus       146 ~g~gvli~-----G~sG~GKStlal~l~~-~G~~lv~DD  178 (312)
T 1knx_A          146 FGVGVLLT-----GRSGIGKSECALDLIN-KNHLFVGDD  178 (312)
T ss_dssp             TTEEEEEE-----ESSSSSHHHHHHHHHT-TTCEEEEEE
T ss_pred             CCEEEEEE-----cCCCCCHHHHHHHHHH-cCCEEEeCC
Confidence            34557777     9999999999999977 487777655

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=94.21  E-value=0.034  Score=47.70  Aligned_cols=33  Identities=18%  Similarity=0.228  Sum_probs=25.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh-----CCceech
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----CLCHLAT   68 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~   68 (251)
                      ++..++|.     |+||+||||+|..++...     .+.++++
T Consensus        62 ~G~ii~I~-----G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           62 MGRIVEIY-----GPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             TTSEEEEE-----CSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            45567777     999999999999988754     3445665

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.19  E-value=0.027  Score=43.85  Aligned_cols=25  Identities=20%  Similarity=0.391  Sum_probs=21.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ...+|+++     |.+|+||||+...|...
T Consensus        24 ~~~ki~vv-----G~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           24 IRKKLVVV-----GDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEE-----ECTTSSHHHHHHHHHHS
T ss_pred             cCcEEEEE-----CcCCCCHHHHHHHHhcC
Confidence            45689999     99999999999998763

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.17  E-value=0.026  Score=47.18  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=21.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++.+++++     |+||+||||+...|...
T Consensus         6 ~r~~~VaIv-----G~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            6 SYCGFIAIV-----GRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             CEEEEEEEE-----CSSSSSHHHHHHHHHTC
T ss_pred             ccCCEEEEE-----CCCCCCHHHHHHHHHCC
Confidence            345578888     99999999999999753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.16  E-value=0.029  Score=51.31  Aligned_cols=28  Identities=32%  Similarity=0.501  Sum_probs=23.9

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++..++++     ||.||||||+.+.|+..+
T Consensus       366 i~~G~~~~iv-----G~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          366 IPQGKTVALV-----GRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             ECCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            3566678888     999999999999998766

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=94.15  E-value=0.036  Score=43.52  Aligned_cols=26  Identities=19%  Similarity=0.390  Sum_probs=21.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+..+|+++     |.+|+||||+...|...
T Consensus        25 ~~~~ki~vv-----G~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           25 VARCKLVLV-----GDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             --CEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEEE-----CcCCCCHHHHHHHHhcC
Confidence            456789999     99999999999998764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=94.15  E-value=0.031  Score=47.19  Aligned_cols=26  Identities=19%  Similarity=0.160  Sum_probs=22.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..+.|.     |+|||||||++..++...
T Consensus       106 ~G~i~~i~-----G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          106 TRTMTEFF-----GEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             TTSEEEEE-----ESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEE-----CCCCCCHhHHHHHHHHHH
Confidence            45678888     999999999999998764

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.10  E-value=0.062  Score=45.14  Aligned_cols=27  Identities=15%  Similarity=0.183  Sum_probs=22.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..+++.     |+||+||||++..++...
T Consensus        66 ~~G~l~li~-----G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           66 KRRNFVLIA-----ARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             CTTCEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEE-----eCCCCCHHHHHHHHHHHH
Confidence            456678888     999999999999998654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=94.10  E-value=0.033  Score=43.98  Aligned_cols=24  Identities=38%  Similarity=0.560  Sum_probs=20.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ...+++++     |.+|+||||+...+..
T Consensus        36 ~~~kVvlv-----G~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           36 TYYRVVLI-----GEQGVGKSTLANIFAG   59 (211)
T ss_dssp             CEEEEEEE-----CCTTSSHHHHHHHHHC
T ss_pred             CceEEEEE-----CCCCCCHHHHHHHHHh
Confidence            34679999     9999999999998864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.07  E-value=0.032  Score=42.79  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ...+|+++     |.+|+||||+...|..
T Consensus        25 ~~~ki~vv-----G~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           25 FKLQVIII-----GSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEEEE-----CSTTSSHHHHHHHHCC
T ss_pred             CceEEEEE-----CCCCCCHHHHHHHHhc
Confidence            35678999     9999999999998854

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=94.07  E-value=0.028  Score=43.54  Aligned_cols=25  Identities=20%  Similarity=0.404  Sum_probs=21.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ...+|+++     |.+|+||||+...|...
T Consensus        24 ~~~ki~vv-----G~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           24 IRKKLVIV-----GDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEE-----CCCCCCHHHHHHHHHhC
Confidence            45689999     99999999999998764

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.06  E-value=0.06  Score=47.63  Aligned_cols=27  Identities=19%  Similarity=0.259  Sum_probs=22.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+++.     |+||+||||++..++...
T Consensus       201 ~~G~liiI~-----G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          201 QRSDLIIVA-----ARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             CTTCEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            356678888     999999999999987654

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=94.04  E-value=0.022  Score=48.09  Aligned_cols=23  Identities=35%  Similarity=0.404  Sum_probs=18.6

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+.+.     |+|||||||++-.++...
T Consensus        30 iteI~-----G~pGsGKTtL~Lq~~~~~   52 (333)
T 3io5_A           30 LLILA-----GPSKSFKSNFGLTMVSSY   52 (333)
T ss_dssp             EEEEE-----ESSSSSHHHHHHHHHHHH
T ss_pred             eEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            57777     999999999987775543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.03  E-value=0.036  Score=50.97  Aligned_cols=28  Identities=32%  Similarity=0.516  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +.++-.+.|+     ||.||||||+.+.|+-.+
T Consensus       100 ~~~Gei~~Lv-----GpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          100 PRPGQVLGLV-----GTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CCTTSEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred             CCCCCEEEEE-----CCCCChHHHHHHHHhcCC
Confidence            4567788999     999999999999998654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=94.03  E-value=0.019  Score=43.51  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=11.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ...+|+++     |.+|+||||+...|..
T Consensus         7 ~~~ki~v~-----G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            7 YLFKLLLI-----GDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEEEE-----CCCCC-----------
T ss_pred             CceEEEEE-----CCCCCCHHHHHHHHHh
Confidence            35679999     9999999999998864

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=94.01  E-value=0.023  Score=52.35  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=20.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .-+.++++     |+.||||||+.+.|+-.
T Consensus        44 ~lp~iaIv-----G~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           44 ALPAIAVI-----GDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CCCCEECC-----CCTTSCHHHHHHHHHSC
T ss_pred             cCCeEEEE-----CCCCChHHHHHHHHhCC
Confidence            33457888     99999999999999754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=93.99  E-value=0.033  Score=43.53  Aligned_cols=25  Identities=28%  Similarity=0.260  Sum_probs=21.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ....+|+++     |.+|+||||+...|..
T Consensus        23 ~~~~ki~vv-----G~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           23 DYLIKLLAL-----GDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             SEEEEEEEE-----SCTTSSHHHHHHHHHC
T ss_pred             ceeEEEEEE-----CcCCCCHHHHHHHHhc
Confidence            345789999     9999999999999875

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=93.98  E-value=0.026  Score=51.65  Aligned_cols=27  Identities=37%  Similarity=0.601  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..++++     ||.||||||+.+.|+..+
T Consensus       367 ~~G~~~~iv-----G~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          367 PAGKTVALV-----GRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             CTTCEEEEE-----ECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhhcc
Confidence            456678888     999999999999998766

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=93.91  E-value=0.071  Score=48.50  Aligned_cols=24  Identities=17%  Similarity=0.191  Sum_probs=19.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+..++|.     |++|+||||++..++.
T Consensus       146 ~~~~v~I~-----G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          146 EPGWVTIH-----GMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             SCEEEEEE-----CCTTSSHHHHHHHHHC
T ss_pred             CCceEEEE-----cCCCCCHHHHHHHHHh
Confidence            45567777     9999999999998853

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=93.89  E-value=0.034  Score=46.70  Aligned_cols=25  Identities=20%  Similarity=0.032  Sum_probs=21.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ++..+.|.     |+|||||||++..++..
T Consensus        97 ~g~i~~i~-----G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           97 SQSVTEFA-----GVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TTEEEEEE-----ESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHH
Confidence            46677888     99999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=93.87  E-value=0.033  Score=50.26  Aligned_cols=31  Identities=16%  Similarity=0.224  Sum_probs=23.7

Q ss_pred             HHHhhc-cCCCCeEEEEEeecccCCCCCChhHHHHHH
Q 025529           22 LRRMKC-ASKPDKRLILIIVWLAGPPGSGKGTQSPII   57 (251)
Q Consensus        22 ~~~~~~-~~~~~~~i~i~ii~i~G~~gsGKST~a~~L   57 (251)
                      ++.+.. .-.++..++++     |++||||||+++.+
T Consensus        28 Ld~i~~G~i~~Ge~~~l~-----G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           28 FDDISHGGLPIGRSTLVS-----GTSGTGKTLFSIQF   59 (525)
T ss_dssp             HHHHTTSSEETTSEEEEE-----ESTTSSHHHHHHHH
T ss_pred             HHHhcCCCCCCCeEEEEE-----cCCCCCHHHHHHHH
Confidence            444443 33467789999     99999999999994

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=93.83  E-value=0.05  Score=40.40  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=19.1

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +...+|.     ||.||||||+..+|.-.
T Consensus        23 ~g~~~I~-----G~NGsGKStil~Ai~~~   46 (149)
T 1f2t_A           23 EGINLII-----GQNGSGKSSLLDAILVG   46 (149)
T ss_dssp             SEEEEEE-----CCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEE-----CCCCCCHHHHHHHHHHH
Confidence            4456777     99999999999888643

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=93.83  E-value=0.014  Score=53.58  Aligned_cols=26  Identities=23%  Similarity=0.402  Sum_probs=23.1

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      .++|.     ||||+|||++|+.+++..+..
T Consensus       329 ~vLL~-----GppGtGKT~LAr~la~~~~r~  354 (595)
T 3f9v_A          329 HILII-----GDPGTAKSQMLQFISRVAPRA  354 (595)
T ss_dssp             CEEEE-----ESSCCTHHHHHHSSSTTCSCE
T ss_pred             ceEEE-----CCCchHHHHHHHHHHHhCCCc
Confidence            68999     999999999999999987643

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=93.83  E-value=0.041  Score=42.35  Aligned_cols=24  Identities=38%  Similarity=0.533  Sum_probs=21.0

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+++++     |.+|+||||+...|...
T Consensus         6 ~~kv~lv-----G~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            6 YYRVVLI-----GEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEEE-----CSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            4678999     99999999999998754

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=93.81  E-value=0.026  Score=48.57  Aligned_cols=20  Identities=30%  Similarity=0.494  Sum_probs=17.5

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIK   58 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La   58 (251)
                      ..+|+     ||.||||||+...++
T Consensus        25 ~~~i~-----G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVE-----GPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEE-----CCTTSSHHHHHHHHH
T ss_pred             eEEEE-----CCCCCCHHHHHHHHH
Confidence            56677     999999999999886

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=93.81  E-value=0.042  Score=45.22  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=20.8

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+++++     |.||+||||+...|...
T Consensus         3 ~~kI~lv-----G~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALI-----GNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEE-----CCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEE-----CCCCCCHHHHHHHHHCC
Confidence            4578888     99999999999999763

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=93.77  E-value=0.059  Score=42.68  Aligned_cols=27  Identities=15%  Similarity=-0.032  Sum_probs=22.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++...++.     |++||||||.+-.++.++
T Consensus        26 ~~G~l~vit-----G~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           26 QNGWIEVIC-----GSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CSCEEEEEE-----CSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence            456667777     999999999998888877

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=93.77  E-value=0.034  Score=45.28  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ++++++     |.|||||||+...|...
T Consensus         2 ~kI~lv-----G~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLI-----GNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEE-----ESTTSSHHHHHHHHHTT
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHCC
Confidence            367888     99999999999999754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=93.75  E-value=0.04  Score=42.67  Aligned_cols=25  Identities=24%  Similarity=0.240  Sum_probs=21.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ...+|+++     |.+|+||||+...|...
T Consensus        28 ~~~ki~vv-----G~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           28 FLFKLVLV-----GDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEEE-----ECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEE-----CcCCCCHHHHHHHHhhC
Confidence            45789999     99999999999998653

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.72  E-value=0.031  Score=51.29  Aligned_cols=27  Identities=41%  Similarity=0.759  Sum_probs=23.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..++++     ||.||||||+.+.|+..+
T Consensus       379 ~~G~~~~iv-----G~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          379 KPGQKVALV-----GPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CTTCEEEEE-----CCTTSSTTHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCcHHHHHHHHhcCc
Confidence            566788888     999999999999998766

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=93.65  E-value=0.043  Score=45.11  Aligned_cols=25  Identities=32%  Similarity=0.361  Sum_probs=21.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +..+|+++     |.+|+||||+...|...
T Consensus         2 ~~~~I~lv-----G~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            2 KKLTIGLI-----GNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CCEEEEEE-----ECTTSSHHHHHHHHHTT
T ss_pred             CccEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            35678999     99999999999999764

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=93.63  E-value=0.042  Score=47.74  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ...+..+.|+     |+||+||||+.+.|..
T Consensus        17 v~~g~~vgiV-----G~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           17 PGNNLKTGIV-----GMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSSCCEEEEE-----ECSSSSHHHHHHHHHH
T ss_pred             ccCCCEEEEE-----CCCCCCHHHHHHHHHC
Confidence            3567789999     9999999999999987

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=93.62  E-value=0.033  Score=46.51  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=19.6

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ...++++     |++|+||||+.+.|..
T Consensus        18 ~~~I~lv-----G~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           18 EFTLMVV-----GESGLGKSTLINSLFL   40 (301)
T ss_dssp             CEEEEEE-----EETTSSHHHHHHHHHC
T ss_pred             CEEEEEE-----CCCCCCHHHHHHHHhC
Confidence            4567888     9999999999999854

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=93.57  E-value=0.036  Score=43.56  Aligned_cols=28  Identities=29%  Similarity=0.516  Sum_probs=22.5

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHH-HHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPI-IKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~-La~~~   61 (251)
                      +....+|+++     |.+|+||||+... +...+
T Consensus        12 ~~~~~ki~v~-----G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           12 PQVQFKLVLV-----GDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             CCCEEEEEEE-----ECTTSSHHHHHTTBHHHHH
T ss_pred             cccceEEEEE-----CCCCCCHHHHHHHHHcCCC
Confidence            3456789999     9999999999998 54443

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=93.54  E-value=0.04  Score=46.13  Aligned_cols=28  Identities=18%  Similarity=0.205  Sum_probs=22.6

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .|.++-.++++     |.||+||||+...|...
T Consensus         6 ~~~~~g~v~iv-----G~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            6 HHMKVGYVAIV-----GKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             -CCEEEEEEEE-----CSTTSSHHHHHHHHHTS
T ss_pred             CCCCCCEEEEE-----CCCCCcHHHHHHHHhCC
Confidence            35566778888     99999999999998653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=93.49  E-value=0.022  Score=44.72  Aligned_cols=26  Identities=15%  Similarity=0.342  Sum_probs=22.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ...++++++     |.+|+||||+...|...
T Consensus        27 ~~~~~i~v~-----G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           27 TVQPEIAFA-----GRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CCSCEEEEE-----ESCHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEE-----cCCCCCHHHHHHHHhCC
Confidence            356789999     99999999999988654

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=93.47  E-value=0.049  Score=45.52  Aligned_cols=25  Identities=36%  Similarity=0.611  Sum_probs=21.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ...+++++     |.+|+||||+...|...
T Consensus         2 ~~~KI~lv-----G~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            2 LGSKLLLM-----GRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             CEEEEEEE-----CCTTSSHHHHHHHHHSC
T ss_pred             CceEEEEE-----CCCCCCHHHHHHHHHhC
Confidence            45689999     99999999999998654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.47  E-value=0.047  Score=49.45  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++-.+.|+     |+.||||||+.+.|+-.+
T Consensus       311 ~Ge~~~i~-----G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          311 KGEVIGIV-----GPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TTCEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            34455555     999999999999998654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=93.40  E-value=0.051  Score=47.84  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=21.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+.+++++     |+||+||||+.+.|...
T Consensus       179 ~~~kvaiv-----G~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          179 DAIKVAIV-----GRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             SCEEEEEE-----CSTTSSHHHHHHHHHTS
T ss_pred             cCceEEEE-----CCCCCCHHHHHHHHhCC
Confidence            35789999     99999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	1e-37
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	5e-37
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	2e-36
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	2e-35
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	4e-32
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	7e-32
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	3e-31
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	4e-31
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	1e-29
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	2e-29
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	3e-27
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	2e-25
d1s3ga2	35	g.41.2.1 (A:126-160) Microbial and mitochondrial A	1e-18
d1akya2	38	g.41.2.1 (A:131-168) Microbial and mitochondrial A	2e-18
d1zina2	35	g.41.2.1 (A:126-160) Microbial and mitochondrial A	1e-17
d2ak3a2	37	g.41.2.1 (A:125-161) Microbial and mitochondrial A	3e-17
d1e4va2	35	g.41.2.1 (A:122-156) Microbial and mitochondrial A	6e-17
d1ak2a2	30	g.41.2.1 (A:147-176) Microbial and mitochondrial A	1e-15
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	5e-14
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	3e-12
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	2e-11
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	7e-11
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	3e-10
d1q3ta_	223	c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae	1e-09
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	2e-08
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	4e-07
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	1e-05
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	4e-05
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	6e-05
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	0.002

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  128 bits (322), Expect = 1e-37
 Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 33/213 (15%)

Query: 38  IIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 97
           + V L GPPG+GKGTQ+  + ++  +  ++TG++ R  +   T LG++AK  +D G+LV 
Sbjct: 1   MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60

Query: 98  DDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 157
            DL   ++D+ +  P    GFILDG+PR+  QA+ L EMLE++G  +D VL F + + VL
Sbjct: 61  SDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVL 120

Query: 158 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 217
            ER+ GR                                R DDT  V+ +R++ +  +T 
Sbjct: 121 LERLKGRG-------------------------------RADDTDDVILNRMKVYRDETA 149

Query: 218 PVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
           P+++YY  +     + A     EV +   +AL 
Sbjct: 150 PLLEYYRDQLKT--VDAVGTMDEVFARALRALG 180

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score =  126 bits (318), Expect = 5e-37
 Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 35/212 (16%)

Query: 38  IIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 97
           + + L G PG+GKGTQ+  I ++Y   H++TGDM RAA+   T LG+KAK  MD+G LV 
Sbjct: 1   MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVP 60

Query: 98  DDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 157
           D++ +GI+ E + K  C  GF+LDGFPRT  QA+ LD++L   G+K++ VLN  ++   L
Sbjct: 61  DEVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEEL 120

Query: 158 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 217
             R+T                                     D    + +RLE    QT 
Sbjct: 121 IARLTAD-----------------------------------DNPDTVTNRLEVNMNQTA 145

Query: 218 PVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
           P++ +Y  K ++  ++ +K  ++V  ++   L
Sbjct: 146 PLLAFYDSKEVLVNINGQKDIKDVFKDLDVIL 177

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  125 bits (313), Expect = 2e-36
 Identities = 73/214 (34%), Positives = 118/214 (55%), Gaps = 35/214 (16%)

Query: 38  IIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 97
           + + L G PG+GKGTQ+  I   Y + H++TGDM RAA+   TPLG++AK+ MD+G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60

Query: 98  DDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 157
           D++ +GI+ E + K  CQ GF+LDGFPRT  QA+ L+ ML   G+K+D V++  +   VL
Sbjct: 61  DEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVL 120

Query: 158 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 217
            ER+T                                          + +RLE   KQ +
Sbjct: 121 MERLTADDNEA-----------------------------------TVANRLEVNMKQMK 145

Query: 218 PVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           P++D+Y +KG +  ++ E+  ++V +++++ L  
Sbjct: 146 PLVDFYEQKGYLRNINGEQDMEKVFADIRELLGG 179

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score =  123 bits (308), Expect = 2e-35
 Identities = 93/217 (42%), Positives = 134/217 (61%), Gaps = 35/217 (16%)

Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
           R +L+     GPPG+GKGTQ+P +   +C+CHLATGDMLRA VA+ + LG K K  MD G
Sbjct: 5   RAVLL-----GPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAG 59

Query: 94  ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 153
           +LVSD++V+ +I++ ++ P C+ GF+LDGFPRT  QA+ LD+++EK+ +K+D V+ F+I 
Sbjct: 60  KLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIP 119

Query: 154 DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH 213
           D++L  RITGR IH                               DD    LK RLEA+H
Sbjct: 120 DSLLIRRITGRLIHS------------------------------DDNKKALKIRLEAYH 149

Query: 214 KQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
            QT P+++YYSK+GI + + A + P  V + +  A S
Sbjct: 150 TQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS 186

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  114 bits (286), Expect = 4e-32
 Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 44/235 (18%)

Query: 18  MTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 77
           M E L++ K            I+++ G PGSGKGTQ   I  +Y   HL+TGD+LRA V+
Sbjct: 1   MEEKLKKSK------------IIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVS 48

Query: 78  AKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK-PSCQKGFILDGFPRTEVQAQKLDEM 136
           + +  G    E M+KG+LV  + V+ ++ +AM       KGF++DG+PR   Q ++ +  
Sbjct: 49  SGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERK 108

Query: 137 LEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQ 196
           +     +   +L        + +R+  R                                
Sbjct: 109 I----GQPTLLLYVDAGPETMTKRLLKRGETS---------------------------G 137

Query: 197 RKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           R DD    +K RLE ++K TEPVI +Y K+GIV +++AE    +V S+V   L  
Sbjct: 138 RVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLDT 192

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 7e-32
 Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 33/217 (15%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIK-AKEAMDKGELVS 97
           +V++ G PG+GKGTQ   I ++Y   HL+ G++LR           +  ++ + +G++V 
Sbjct: 3   VVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVP 62

Query: 98  DDLVVGIIDEAMKKPSC----QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 153
            ++ + ++   M +       +  F++DGFPR +   Q  ++ ++ +   V  VL F  +
Sbjct: 63  VEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKA-DVSFVLFFDCN 121

Query: 154 DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH 213
           + +  ER   R                                R DD    L+ R++ + 
Sbjct: 122 NEICIERCLERGKSS---------------------------GRSDDNRESLEKRIQTYL 154

Query: 214 KQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
           + T+P+ID Y + G V ++ A K   EV  EV +   
Sbjct: 155 QSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD 191

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score =  111 bits (279), Expect = 3e-31
 Identities = 71/217 (32%), Positives = 111/217 (51%), Gaps = 44/217 (20%)

Query: 38  IIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 97
           + + L G P +GKGTQ+  I ++Y +  ++TGDMLRAAV + + LG +AK+ MD G+LV+
Sbjct: 1   MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60

Query: 98  DDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 157
           D+LV+ ++ E + +  C+ GF+LDGFPRT  QA  + E     G  VD VL F + D ++
Sbjct: 61  DELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELI 116

Query: 158 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 217
            +RI                                           ++ RL  +H+ T 
Sbjct: 117 VDRIVKDD-----------------------------------QEETVRKRLVEYHQMTA 141

Query: 218 PVIDYYSKKG-----IVAQLHAEKPPQEVTSEVQKAL 249
           P+I YYSK+        A++   KP  EV ++++K L
Sbjct: 142 PLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 178

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (278), Expect = 4e-31
 Identities = 86/218 (39%), Positives = 125/218 (57%), Gaps = 44/218 (20%)

Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
           R++LI     GPPG+GKGTQ+P +++ +   HLATGDMLR+ +A  T LG++AK+ MD+G
Sbjct: 4   RMVLI-----GPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQG 58

Query: 94  ELVSDDLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
            LVSDD++V +I + +   P+C+ GFILDGFPRT  QA+KLD+ML++QG  ++K +   +
Sbjct: 59  GLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV 118

Query: 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 212
           DD +L  RIT                                           K RL A+
Sbjct: 119 DDELLVARITNADAL--------------------------------------KKRLAAY 140

Query: 213 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
           H QTEP++D+Y K GI A + A +PP  V +++   L 
Sbjct: 141 HAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 178

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score =  108 bits (269), Expect = 1e-29
 Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 29/213 (13%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           +V++ G PGSGKGTQ   I  ++   HL+ GD+LR    + +  G      +  GE+V  
Sbjct: 8   VVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPS 67

Query: 99  DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 158
            + V  + +     +  K F++DGFPR E      +E ++        VL F   + V+ 
Sbjct: 68  IVTV-KLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDF-VDTKFVLFFDCPEEVMT 125

Query: 159 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 218
           +R+  R                                R DD    +K R   F+ QT+ 
Sbjct: 126 QRLLKRGESS---------------------------GRSDDNIESIKKRFNTFNVQTKL 158

Query: 219 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           VID+Y+K   V  + A +   EV ++V+    +
Sbjct: 159 VIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (268), Expect = 2e-29
 Identities = 53/222 (23%), Positives = 99/222 (44%), Gaps = 37/222 (16%)

Query: 31  PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV-AAKTPLGIKAKEA 89
           PD+  ++ ++   G PG+GKGTQ   +  +Y   HL+ GD+LRA    A +  G   K  
Sbjct: 5   PDQVSVIFVL---GGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNC 61

Query: 90  MDKGELVSDDLVVGIIDEAMKK--PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKV 147
           + +G++V  ++ + ++  A+     + +  F++DGFPR   QA   +  + +       +
Sbjct: 62  IKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVES----KFI 117

Query: 148 LNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKS 207
           L F   + ++ ER+  R                                R DD    +K 
Sbjct: 118 LFFDCPEDIMLERLLERGKTS---------------------------GRSDDNIESIKK 150

Query: 208 RLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
           R   F + + PVI+Y+  K  V ++  ++  ++V  +VQ A+
Sbjct: 151 RFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAI 192

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score =  101 bits (253), Expect = 3e-27
 Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 42/215 (19%)

Query: 38  IIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 97
           + V ++G P SGKGTQ  +IK +Y L H++ GD+LRA +AA +  G +AKE M+KG+LV 
Sbjct: 4   LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVP 63

Query: 98  DDLVVGIIDEA-MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAV 156
           D++VV ++ E   +  + + G++LDG+PR+  QA      LE    + D  +   + D +
Sbjct: 64  DEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAM----ALETLEIRPDTFILLDVPDEL 119

Query: 157 LEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQT 216
           L ER+                                           +K RLE +++  
Sbjct: 120 LVERVVFDDTEE-----------------------------------KVKLRLETYYQNI 144

Query: 217 EPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
           E ++  Y  + I+ ++  +     V +++ + L +
Sbjct: 145 ESLLSTY--ENIIVKVQGDATVDAVFAKIDELLGS 177

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score = 96.8 bits (240), Expect = 2e-25
 Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 49/218 (22%)

Query: 34  RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
           R  ++     G PGSGKGT S  I   + L HL++GD+LR  +   T +G+ AK  +D+G
Sbjct: 8   RAAIM-----GAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQG 62

Query: 94  ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 153
           +L+ DD++  ++     K   Q  ++LDGFPRT  QA         +  ++D V+N  + 
Sbjct: 63  KLIPDDVMTRLV-LHELKNLTQYNWLLDGFPRTLPQA-----EALDRAYQIDTVINLNVP 116

Query: 154 DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH 213
             V+++R+T R                                        +  RL+A+ 
Sbjct: 117 FEVIKQRLTDRP-------------------------------------ETVVKRLKAYE 139

Query: 214 KQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
            QTEPV++YY KKG++      +   ++   V   L  
Sbjct: 140 AQTEPVLEYYRKKGVLETFSGTETN-KIWPHVYAFLQT 176

>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]} Length = 35

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus globisporus [TaxId: 1459]

 Score = 74.2 bits (183), Expect = 1e-18
 Identities = 16/35 (45%), Positives = 18/35 (51%)

Query: 163 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 197
           GR I    G +YH  F PP+V G  D  G  L QR
Sbjct: 1   GRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQR 35

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 38

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.6 bits (181), Expect = 2e-18
 Identities = 25/38 (65%), Positives = 28/38 (73%)

Query: 163 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDD 200
           GR IHP+SGR+YH  F PPK    DDVTGE L+QR DD
Sbjct: 1   GRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDD 38

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 35

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 72.0 bits (177), Expect = 1e-17
 Identities = 18/35 (51%), Positives = 19/35 (54%)

Query: 163 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 197
           GR I  + G TYH  F PP  PGV D  G  L QR
Sbjct: 1   GRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQR 35

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 37

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score = 70.9 bits (174), Expect = 3e-17
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 164 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD 199
           RWIHP SGR Y+ +F PPK  G+DD+TGEPL+QR+D
Sbjct: 2   RWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQRED 37

>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]} Length = 35

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Escherichia coli [TaxId: 562]

 Score = 70.2 bits (172), Expect = 6e-17
 Identities = 23/35 (65%), Positives = 24/35 (68%)

Query: 163 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 197
           GR +H  SGR YH KF PPKV G DDVTGE L  R
Sbjct: 1   GRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTR 35

>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 30

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score = 66.5 bits (163), Expect = 1e-15
 Identities = 20/30 (66%), Positives = 24/30 (80%)

Query: 168 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 197
           P SGR+YH +F PPK P  DD+TGEPLI+R
Sbjct: 1   PQSGRSYHEEFNPPKEPMKDDITGEPLIRR 30

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 66.2 bits (160), Expect = 5e-14
 Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 7/150 (4%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           +  + GP G GK T    +  +        GD++   V        ++ E +        
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKN-- 61

Query: 99  DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 158
                I D  +     Q   +LD     +        +  K      + +    +   L 
Sbjct: 62  -----ITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELL 116

Query: 159 ERITGRWIHPSSGRTYHTKFAPPKVPGVDD 188
            R   R      G          +  G+D+
Sbjct: 117 RRDALRKKDEQMGERCLELVEEFESKGIDE 146

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 61.2 bits (147), Expect = 3e-12
 Identities = 25/219 (11%), Positives = 60/219 (27%), Gaps = 36/219 (16%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDE-----YCLCHLATGDMLRAAVAAKTPLGIKAKEAM--- 90
           I  + G PG GK T    +K+           +  GD + A          + +      
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 91  DKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 150
           +K + +  D   GI +EA  +   +    +D        +  L  +      +++  + F
Sbjct: 63  EKQKKLQIDAAKGIAEEA--RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIF 120

Query: 151 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLE 210
            ++                   T +                         +   +     
Sbjct: 121 LLEADPKI-----ILSRQKRDTTRNRND---------------------YSDESVILETI 154

Query: 211 AFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
            F +         +   +   ++ E  P    +E+ +++
Sbjct: 155 NFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM 193

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 59.2 bits (142), Expect = 2e-11
 Identities = 23/216 (10%), Positives = 61/216 (28%), Gaps = 34/216 (15%)

Query: 39  IVWLAGPPGSGKGTQSPII-----KDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
           +V + G PG G  T S +      K+      ++ G ++     AK    +  ++ M K 
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE--VAKEENLVSDRDQMRKM 60

Query: 94  ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 153
           +  +   +  +    + + + +    +D           L  +      +++  L   + 
Sbjct: 61  DPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVV- 119

Query: 154 DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH 213
           +   +E +  R    +  R                          D   A    + +  +
Sbjct: 120 ETTGDEILMRRMSDETRVR--------------------------DLDTASTIEQHQFMN 153

Query: 214 KQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
           +         +   +    +      +   E+   L
Sbjct: 154 RCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL 189

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 58.1 bits (139), Expect = 7e-11
 Identities = 19/214 (8%), Positives = 54/214 (25%), Gaps = 3/214 (1%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELV-- 96
           ++ + GP G+GKGT    + +      L +G + R    A     +          L   
Sbjct: 5   VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASH 64

Query: 97  -SDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDA 155
                V    +  +          +         +Q       ++     +     +   
Sbjct: 65  LDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGL 124

Query: 156 VLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQ 215
           + + R  G  + P +        +  +      +  +      +    + + +      +
Sbjct: 125 IADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDR 184

Query: 216 TEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
              V         +         ++V  +  +  
Sbjct: 185 NRAVAPLVPAADALVLDSTTLSIEQVIEKALQYA 218

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 55.1 bits (131), Expect = 3e-10
 Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 3/140 (2%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           I+   G PGSGK T +     +    +    D  R ++ A             +G +   
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIV--T 61

Query: 99  DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 158
            +        +      KG I+        +    +   ++ G KV+    F +    L 
Sbjct: 62  GMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHK-VFDVPWTELV 120

Query: 159 ERITGRWIHPSSGRTYHTKF 178
           +R + R           + +
Sbjct: 121 KRNSKRGTKAVPIDVLRSMY 140

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 54.6 bits (130), Expect = 1e-09
 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 1/131 (0%)

Query: 38  IIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 97
           I + + GP  SGK T + II  ++   +L TG M RAA        +  +E      L+ 
Sbjct: 4   IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLD 63

Query: 98  DDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 157
              +     E   +            P  E +       +    +  +K+++   + A  
Sbjct: 64  QHPISFGRSETGDQLVFVGDV-DITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQ 122

Query: 158 EERITGRWIHP 168
              +       
Sbjct: 123 GGIVMDGRDIG 133

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 16/129 (12%)

Query: 40  VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
           + + G PG+GK + + +I  E           L      K        +      ++ + 
Sbjct: 8   ILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLV-----KENHFYTEYDTELDTHIIEEK 62

Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
               ++D        +   ++D         +               V+       VL E
Sbjct: 63  DEDRLLDFMEPIMVSRGNHVVDYHSSELFPER-----------WFHMVVVLHTSTEVLFE 111

Query: 160 RITGRWIHP 168
           R+T R    
Sbjct: 112 RLTKRQYSE 120

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 4e-07
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 21/134 (15%)

Query: 35  LILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE 94
           ++L  + L G PG GK T    +  +  L ++  GD+ R     +  L     E  D   
Sbjct: 2   MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAR-----EEQLYDGYDEEYDCPI 56

Query: 95  LVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDD 154
           L  D +V  + ++  +          D FP                 +    V     D 
Sbjct: 57  LDEDRVVDELDNQMREGGVIVDYHGCDFFPE----------------RWFHIVFVLRTDT 100

Query: 155 AVLEERITGRWIHP 168
            VL ER+  R  + 
Sbjct: 101 NVLYERLETRGYNE 114

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 6/158 (3%)

Query: 8   NLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA 67
           N  D    + + + L  +    K  +     +  L G PGSGK +    I +E     + 
Sbjct: 5   NFTDKQFENRLNDNLEELIQGKKAVESPTAFL--LGGQPGSGKTSLRSAIFEETQGNVIV 62

Query: 68  -TGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRT 126
              D  +          +      D  + V+            +        +++G  RT
Sbjct: 63  IDNDTFKQ--QHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRT 120

Query: 127 EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164
                +   ML+ +G +   +   A+           R
Sbjct: 121 TDVPIQTATMLQAKGYETK-MYVMAVPKINSYLGTIER 157

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 26/211 (12%), Positives = 51/211 (24%), Gaps = 49/211 (23%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           I  L G  GSGK   +  +  +     L    +       K   G    +   K  L + 
Sbjct: 8   IYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQA- 66

Query: 99  DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 158
                 +++A           L      +   + L              +    D  V+E
Sbjct: 67  ------LNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNL----SFIYLKGDFDVIE 116

Query: 159 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 218
            R+  R  H                                    +L ++ E   +    
Sbjct: 117 SRLKARKGH-------------------------------FFKTQMLVTQFETLQEPGAD 145

Query: 219 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
             D          +  ++P + V +   + +
Sbjct: 146 ETDVLV-------VDIDQPLEGVVASTIEVI 169

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 40.3 bits (93), Expect = 6e-05
 Identities = 28/186 (15%), Positives = 48/186 (25%), Gaps = 22/186 (11%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 97
           I+ L+G PGSGK T +  + +           D L   +          +       ++ 
Sbjct: 6   ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQ 65

Query: 98  DDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 157
               V     A +        ILDG  R +               +    +      A  
Sbjct: 66  IAADV-----AGRYAKEGYFVILDGVVRPDWL------PAFTALARPLHYIVLRTTAAEA 114

Query: 158 EERITGRWIHPSSGRTYHTKFAP------PKVPGVDDVTGEPLIQRKDDTAAVLKSRLEA 211
            ER   R     S                     V  V+G+      D       + L++
Sbjct: 115 IERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDT----DQALQSAINALQS 170

Query: 212 FHKQTE 217
              + +
Sbjct: 171 GRFRID 176

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 21/135 (15%), Positives = 32/135 (23%), Gaps = 7/135 (5%)

Query: 39  IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
           ++ L G   +GK      ++       LA G               +     D    VS 
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64

Query: 99  DLVV-----GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 153
                       +  +         I+D        A   +      G      +    D
Sbjct: 65  GPEFRALEGAWAEGVVAMARAGARIIIDDVFLG--GAAAQERWRSFVGDLDVLWVGVRCD 122

Query: 154 DAVLEERITGRWIHP 168
            AV E R T R    
Sbjct: 123 GAVAEGRETARGDRV 137

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	100.0
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	100.0
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	100.0
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	100.0
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	100.0
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.98
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.98
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.97
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.97
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.97
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.97
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.96
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.75
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.72
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.7
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.67
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.67
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.66
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.66
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.65
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.63
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.61
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.6
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.59
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.55
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.55
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.54
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.52
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.51
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.45
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.45
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.42
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.37
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.37
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.35
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	99.3
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	99.28
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	99.25
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.12
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.05
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.99
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.96
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.95
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.86
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.83
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.82
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.78
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.72
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.67
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.65
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	98.62
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	98.61
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	98.57
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.43
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	98.36
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	98.25
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.23
d1ak2a2	30	Microbial and mitochondrial ADK, insert "zinc fing	98.09
d1e4va2	35	Microbial and mitochondrial ADK, insert "zinc fing	98.05
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.99
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.99
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	97.98
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.98
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	97.94
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.94
d1s3ga2	35	Microbial and mitochondrial ADK, insert "zinc fing	97.88
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.79
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.77
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.76
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.74
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.74
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.71
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.69
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.67
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.62
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.61
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.61
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.55
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.54
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.5
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.41
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.39
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.31
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.3
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.28
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.27
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.21
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.18
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.18
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.13
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.12
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.04
d1zaka2	31	Microbial and mitochondrial ADK, insert "zinc fing	97.02
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.91
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.91
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.84
d1okkd2	207	GTPase domain of the signal recognition particle r	96.76
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.75
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.74
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.73
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.69
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.66
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.64
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	96.63
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.6
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.54
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.46
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.45
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.43
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.37
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.32
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.3
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.24
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.24
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.23
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.23
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.22
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.21
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.17
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.14
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.12
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.11
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.08
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.07
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.06
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.06
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.05
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.04
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.01
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.94
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.93
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.88
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.88
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.88
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.83
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.82
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.8
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.77
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	95.77
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.75
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.74
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.7
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.68
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.65
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.64
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.63
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.59
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.58
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.49
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	95.45
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.4
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.37
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.36
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.26
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.26
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.24
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.22
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	95.21
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.2
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.17
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.17
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.14
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.12
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.08
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.06
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.03
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.03
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.96
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.93
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.92
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.91
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.91
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.89
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	94.83
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.83
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.7
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.7
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.69
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	94.63
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.63
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.62
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.6
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.59
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.56
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.53
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.51
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.49
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.47
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.46
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.41
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	94.4
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.36
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.36
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.33
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.28
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.28
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.26
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.24
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	94.23
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.18
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.18
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.17
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.16
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	93.99
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	93.87
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.85
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.81
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.79
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.77
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	93.75
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.72
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	93.72
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.7
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.7
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.68
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	93.66
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.65
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.57
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.56
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	93.56
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	93.5
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.4
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	93.33
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	93.28
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.23
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.17
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.84
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.58
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.58
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	92.58
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	92.33
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	92.15
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	92.1
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	92.05
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	91.71
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	91.52
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	91.14
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	90.99
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	90.9
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	90.85
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	90.82
d1xpua3	289	Transcription termination factor Rho, ATPase domai	90.55
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.13
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.03
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	89.42
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	89.33
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	89.28
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	88.82
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	88.71
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	88.66
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	88.57
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	88.4
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	88.32
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	88.27
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	87.8
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	87.79
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	87.28
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	87.18
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	86.95
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	86.87
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	86.69
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	86.67
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	86.29
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	86.11
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	86.09
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	85.69
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	85.45
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.29
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	85.28
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.05
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	85.02
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	84.89
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	84.77
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	84.35
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	84.0
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	83.69
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.39
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.01
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	81.79
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	80.74

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=100.00  E-value=5.4e-33  Score=219.61  Aligned_cols=186  Identities=49%  Similarity=0.902  Sum_probs=172.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM  109 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l  109 (251)
                      +++++|+|+     |||||||||+|+.||++||+.|+++++++|+....++..|..+..++..|..++++.+..++...+
T Consensus         1 p~~~riil~-----G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l   75 (190)
T d1ak2a1           1 PKGVRAVLL-----GPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNL   75 (190)
T ss_dssp             CCCCEEEEE-----CCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CCccEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhh
Confidence            368899999     999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCC
Q 025529          110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV  189 (251)
Q Consensus       110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~  189 (251)
                      ......+|||+||||++..|+..|...+...+..+.++++|+++.+...+|+..|..                       
T Consensus        76 ~~~~~~~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~-----------------------  132 (190)
T d1ak2a1          76 ETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLI-----------------------  132 (190)
T ss_dssp             TSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEE-----------------------
T ss_pred             ccccccCceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCC-----------------------
Confidence            877777899999999999999999888777778889999999999999999999852                       


Q ss_pred             CCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          190 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       190 ~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                             +.+++.+.+++|+..|++...++.++|.+.+.++.||++.++++|+++|.++|+
T Consensus       133 -------~~d~~~e~i~~R~~~y~~~~~p~~~~y~~~~~~~~Id~~~s~eeV~~~I~~~l~  186 (190)
T d1ak2a1         133 -------HSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS  186 (190)
T ss_dssp             -------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             -------CCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence                   246678899999999999999999999998999999999999999999999885

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.7e-32  Score=213.88  Aligned_cols=181  Identities=38%  Similarity=0.724  Sum_probs=167.7

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+|+     |||||||||+|+.|+++||+.++++++++++++...++.+..+...+.++..++.++...++...+...
T Consensus         1 m~I~i~-----G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~   75 (181)
T d2cdna1           1 MRVLLL-----GPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP   75 (181)
T ss_dssp             CEEEEE-----CCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCc
Confidence            689999     999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      .+..++++||+|.+..+...|.......+..|+++++|+++++++.+|+..|+                           
T Consensus        76 ~~~~~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~---------------------------  128 (181)
T d2cdna1          76 DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG---------------------------  128 (181)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC---------------------------
T ss_pred             cccccEEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccc---------------------------
Confidence            77789999999999999999988887778899999999999999999999874                           


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA  251 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~  251 (251)
                          |.++..+.+++|+..|++...++.++|.+  .++.|||+.++++|+++|.++|.+
T Consensus       129 ----r~~~~~~~i~~rl~~y~~~~~~l~~~y~~--~~~~Id~~~s~eeV~~~I~~~l~k  181 (181)
T d2cdna1         129 ----RADDTDDVILNRMKVYRDETAPLLEYYRD--QLKTVDAVGTMDEVFARALRALGK  181 (181)
T ss_dssp             ----CTTCSHHHHHHHHHHHHHHTTTHHHHTTT--TEEEEECCSCHHHHHHHHHHHTTC
T ss_pred             ----cccchhHHHHHHHHHHHHHHHHHHHHHhc--CeEEEECCCCHHHHHHHHHHHhCc
Confidence                34677889999999999999999999965  699999999999999999999864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=100.00  E-value=2.4e-31  Score=208.67  Aligned_cols=178  Identities=40%  Similarity=0.739  Sum_probs=165.4

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+|+     |||||||||+|+.|+++||+++++++++++......++.|..++.++.+|..+|+.....++..++...
T Consensus         1 M~I~i~-----G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~   75 (182)
T d1s3ga1           1 MNIVLM-----GLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKS   75 (182)
T ss_dssp             CEEEEE-----CSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSS
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhccc
Confidence            678888     999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      .+..+|++||||++..++..|.+.+...+..+..+++++++.+.+.+|+..                             
T Consensus        76 ~~~~~~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~-----------------------------  126 (182)
T d1s3ga1          76 DCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTA-----------------------------  126 (182)
T ss_dssp             TTSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHT-----------------------------
T ss_pred             ccccceeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhc-----------------------------
Confidence            777899999999999999999888877777888999999999999999753                             


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                            +++++.+++|+..|++...++.+||.+.+.++.|||+.++++|++.|.++|+
T Consensus       127 ------~~~~e~i~~R~~~y~~~~~~i~~~y~~~~~~~~Id~~~~~eeV~~~I~~il~  178 (182)
T d1s3ga1         127 ------DDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVILQ  178 (182)
T ss_dssp             ------TCSHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHT
T ss_pred             ------cchhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence                  3456789999999999999999999999999999999999999999999886

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-31  Score=210.44  Aligned_cols=177  Identities=49%  Similarity=0.875  Sum_probs=162.0

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK  111 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~  111 (251)
                      .|+|+|+     |||||||||+|+.|+++||++++++++++++.....++.|..++.++..+..+++......+..++..
T Consensus         2 ~mrIvl~-----G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~   76 (180)
T d1akya1           2 SIRMVLI-----GPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTN   76 (180)
T ss_dssp             CCEEEEE-----CCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             ceEEEEE-----CCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhc
Confidence            5889999     99999999999999999999999999999999999999999999999999999999998888777655


Q ss_pred             CC-CCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529          112 PS-CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT  190 (251)
Q Consensus       112 ~~-~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~  190 (251)
                      .. ...|||+||||++..|+..+...+...+..|+.+|+|+++++++.+|+..+                          
T Consensus        77 ~~~~~~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~--------------------------  130 (180)
T d1akya1          77 NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNA--------------------------  130 (180)
T ss_dssp             CGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSH--------------------------
T ss_pred             CccccCCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhccccc--------------------------
Confidence            43 447999999999999999988888777788999999999999999998754                          


Q ss_pred             CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529          191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA  251 (251)
Q Consensus       191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~  251 (251)
                                  +.+.+|+..|++...++.++|++.+.++.|||++++++|+++|.++|.+
T Consensus       131 ------------~~~~~r~~~y~~~~~~v~~~y~~~~~~~~Id~~~~~eeV~~~I~~~l~k  179 (180)
T d1akya1         131 ------------DALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGK  179 (180)
T ss_dssp             ------------HHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHTC
T ss_pred             ------------ccccchHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence                        4678899999999999999999989999999999999999999998863

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=2.5e-31  Score=210.53  Aligned_cols=189  Identities=29%  Similarity=0.454  Sum_probs=166.8

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHH
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDE  107 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~  107 (251)
                      +..+|..|+++     |||||||||+|+.|+++||+.++++++++++........+..++..+..+...++.....++..
T Consensus         2 ~~~kp~iI~i~-----G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (194)
T d1qf9a_           2 EKSKPNVVFVL-----GGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKN   76 (194)
T ss_dssp             CCCCCEEEEEE-----ESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCCCCcEEEEE-----CCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHH
Confidence            45578889999     9999999999999999999999999999999999999999999999999999999988888887


Q ss_pred             HHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCC
Q 025529          108 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVD  187 (251)
Q Consensus       108 ~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~  187 (251)
                      ..... ..+++++||||++..+...|..... ....|+++|+|++|++++.+|+..|+..                    
T Consensus        77 ~~~~~-~~~~~i~dg~p~~~~~~~~l~~~~~-~~~~~~~vi~l~~~~~~~~~R~~~~~~~--------------------  134 (194)
T d1qf9a_          77 AIDAN-QGKNFLVDGFPRNEENNNSWEENMK-DFVDTKFVLFFDCPEEVMTQRLLKRGES--------------------  134 (194)
T ss_dssp             HHHTS-TTCCEEEETCCCSHHHHHHHHHHHT-TTCEEEEEEEEECCHHHHHHHHHHHHTT--------------------
T ss_pred             Hhhhh-hcCCeEEEecchhhhhHHHHHhhhh-hcccccEEEEeecchHHHHHHHHhhccc--------------------
Confidence            76654 3468999999999999988876543 3467899999999999999999887421                    


Q ss_pred             CCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          188 DVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       188 ~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                             ..+.++..+.+++|+..|++...++.++|.+.+.++.||++.++++|++.|.++|+
T Consensus       135 -------~~~~~d~~e~~~~Rl~~y~~~~~~~~~~y~~~~~~~~Id~~~~ieeV~~~I~~ii~  190 (194)
T d1qf9a_         135 -------SGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFK  190 (194)
T ss_dssp             -------SCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             -------cccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHH
Confidence                   12457788999999999999999999999998899999999999999999999885

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.98  E-value=2.5e-31  Score=210.68  Aligned_cols=185  Identities=36%  Similarity=0.581  Sum_probs=165.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~  110 (251)
                      +++.|+|+     |||||||||+|+.|+++||++||+++++++..+...+..|..+.+++..+..+|++++..++..++.
T Consensus         7 ~~~iI~l~-----G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (194)
T d3adka_           7 KSKIIFVV-----GGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMV   81 (194)
T ss_dssp             TSCEEEEE-----ECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred             CCcEEEEE-----CCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhh
Confidence            56778889     9999999999999999999999999999999999999999999999999999999999999998886


Q ss_pred             CCC-CCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCC
Q 025529          111 KPS-CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV  189 (251)
Q Consensus       111 ~~~-~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~  189 (251)
                      ... ..+|+|+||||++..|+..+...+    ..+..++++.++.++..+|...+..                       
T Consensus        82 ~~~~~~~g~ildg~pr~~~qa~~~~~~~----~~~~~~~~~~~~~~~~~~r~~~~~~-----------------------  134 (194)
T d3adka_          82 AKVDTSKGFLIDGYPREVKQGEEFERKI----GQPTLLLYVDAGPETMTKRLLKRGE-----------------------  134 (194)
T ss_dssp             TTTTTCSCEEEESCCSSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHHHH-----------------------
T ss_pred             hcccccccceeeeccchhHHHHHHHHHh----CCccchhccccchhhhHhHhhhhcc-----------------------
Confidence            654 457999999999999999887643    5678999999999999999876631                       


Q ss_pred             CCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529          190 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA  251 (251)
Q Consensus       190 ~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~  251 (251)
                          ...|.++..+.+++|+..|++...++.+||++.+.++.|||+.++++|++.|.+.|++
T Consensus       135 ----~~~r~~d~~e~i~~R~~~y~~~~~~~~~~y~~~~~~~~Id~~~s~~eV~~~I~~~i~~  192 (194)
T d3adka_         135 ----TSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLDT  192 (194)
T ss_dssp             ----HHTCCCCCSTTHHHHHHHHHHHTHHHHHHHTTTTCEEEEECCSCHHHHHHHHHHHHHT
T ss_pred             ----cccCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence                1235677778899999999999999999999989999999999999999999998864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.98  E-value=4.2e-31  Score=208.66  Aligned_cols=174  Identities=37%  Similarity=0.627  Sum_probs=157.9

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHH
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDE  107 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~  107 (251)
                      +|.+.|+|+|+     |||||||||+|+.|+++||+.|+++++++++.+...+..+..++..+..+..++++.+..++..
T Consensus         2 ~~~r~mrIili-----G~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~   76 (189)
T d2ak3a1           2 ASARLLRAAIM-----GAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLH   76 (189)
T ss_dssp             CSSCCCEEEEE-----CCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCCcceeEEEE-----CCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhh
Confidence            47789999999     9999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCC
Q 025529          108 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVD  187 (251)
Q Consensus       108 ~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~  187 (251)
                      .+.... ..+||+||||++..|+..|...     ..++.+|+|+||.+.+.+|+..|                       
T Consensus        77 ~~~~~~-~~~~ildGfPr~~~q~~~l~~~-----~~~~~vi~L~v~~~~l~~R~~~r-----------------------  127 (189)
T d2ak3a1          77 ELKNLT-QYNWLLDGFPRTLPQAEALDRA-----YQIDTVINLNVPFEVIKQRLTDR-----------------------  127 (189)
T ss_dssp             HHHHHT-TSCEEEESCCCSHHHHHHHHTT-----CCCCEEEEEECCHHHHHHHHTGS-----------------------
T ss_pred             hhhhhh-hcCcccccccchhhHHHHhhhc-----CcceEEEEEeccchhhhhhcccc-----------------------
Confidence            876543 4689999999999999887642     57899999999999999998765                       


Q ss_pred             CCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          188 DVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       188 ~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                    .+.+.+|+..|++...++.++|.+.+.++.||++ ++++|+++|.+.|+
T Consensus       128 --------------~e~~~kr~~~y~~~~~~v~~~Y~~~~~l~~idg~-~~~eV~~~I~~~i~  175 (189)
T d2ak3a1         128 --------------PETVVKRLKAYEAQTEPVLEYYRKKGVLETFSGT-ETNKIWPHVYAFLQ  175 (189)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHH
T ss_pred             --------------hHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCC-ChHHHHHHHHHHHH
Confidence                          3578899999999999999999998999999998 57999999999875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.9e-31  Score=206.30  Aligned_cols=173  Identities=43%  Similarity=0.767  Sum_probs=156.8

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+|+     |||||||||+|+.|+++||+.++++++++++.....++.+..+++++.++..+|+..+..++...+...
T Consensus         1 m~I~i~-----G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~   75 (179)
T d1e4va1           1 MRIILL-----GAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQE   75 (179)
T ss_dssp             CEEEEE-----ESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSG
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhccc
Confidence            688999     999999999999999999999999999999999999999999999999999999999999999888777


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      +..+|+|+||+|++..++..+..    .+..|+++|+|+||++++.+|+..|                            
T Consensus        76 ~~~~g~i~~g~pr~~~~~~~~~~----~~~~~~~vi~L~~~~~~l~~R~~~~----------------------------  123 (179)
T d1e4va1          76 DCRNGFLLDGFPRTIPQADAMKE----AGINVDYVLEFDVPDELIVDRIVKD----------------------------  123 (179)
T ss_dssp             GGGGCEEEESCCCSHHHHHHHHH----TTCCCSEEEEEECCHHHHHHHHHTT----------------------------
T ss_pred             ccccceeecccccchHHhhhhhh----ccCCceEEEEeccchhhhhhhhccc----------------------------
Confidence            77789999999999998886554    4578999999999999999998764                            


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhC-----CcEEEEcCCCChhHHHHHHHHHh
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKK-----GIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~-----~~~~~id~~~~~eev~~~i~~~l  249 (251)
                             ++.+.+++|+..|++...++.++|...     ..++.|||+.++++|+++|.++|
T Consensus       124 -------~~~e~i~~r~~~y~~~~~~v~~~y~~~~~~~~~~~~~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         124 -------DQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             -------CSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             -------ccHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcEEEEECCCCHHHHHHHHHHHh
Confidence                   345789999999999999999999752     46899999999999999999886

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=9.6e-30  Score=198.98  Aligned_cols=178  Identities=43%  Similarity=0.782  Sum_probs=164.4

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+|+     |||||||||+|+.|+++||+++++++++++......++.|..++.++..+..+|+.....++.......
T Consensus         1 m~I~i~-----G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (182)
T d1zina1           1 MNLVLM-----GLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKD   75 (182)
T ss_dssp             CEEEEE-----CSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSG
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhch
Confidence            678899     999999999999999999999999999999999889999999999999999999999999998888777


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      ....+++++++|....+...+.......+..++.+++|+++.+.+.+|+..+                            
T Consensus        76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~----------------------------  127 (182)
T d1zina1          76 DCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTAD----------------------------  127 (182)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT----------------------------
T ss_pred             hhhcCcccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccc----------------------------
Confidence            7778999999999999999888877777788999999999999999998754                            


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                             ++.+.+++|++.|++...++.++|.+.+.++.|||+.++++|+++|.++|.
T Consensus       128 -------~~~e~~~~Rl~~y~~~~~~l~~~y~~~~~~~~Id~~~~~eeV~~~I~~~L~  178 (182)
T d1zina1         128 -------DNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLG  178 (182)
T ss_dssp             -------CSHHHHHHHHHHHHHHHTHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             -------cchHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence                   346789999999999999999999998899999999999999999998875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-30  Score=203.45  Aligned_cols=186  Identities=27%  Similarity=0.508  Sum_probs=162.1

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHc-CCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  110 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~  110 (251)
                      ||.|+|+     |||||||||+|+.|+++||+.|+++++++|..... .++.++.+...+.++..+++..+..++...+.
T Consensus         1 p~iI~i~-----GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~   75 (194)
T d1teva_           1 PLVVFVL-----GGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMD   75 (194)
T ss_dssp             CEEEEEE-----CCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CcEEEEE-----CCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhc
Confidence            6788888     99999999999999999999999999999988764 57889999999999999999998888776654


Q ss_pred             CC----CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCC
Q 025529          111 KP----SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGV  186 (251)
Q Consensus       111 ~~----~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~  186 (251)
                      ..    ....++++||||++..+...+...+. ....++.+++++++.+...+|+..|...                   
T Consensus        76 ~~~~~~~~~~~~~~~g~pr~~~~~~~l~~~~~-~~~~~~~vi~l~~~~~~~~~r~~~R~~~-------------------  135 (194)
T d1teva_          76 QTMAANAQKNKFLIDGFPRNQDNLQGWNKTMD-GKADVSFVLFFDCNNEICIERCLERGKS-------------------  135 (194)
T ss_dssp             HHHHHCTTCCEEEEESCCCSHHHHHHHHHHHT-TTCEEEEEEEEECCHHHHHHHHHHHHHT-------------------
T ss_pred             ccchhhhcccceeeccchhhHHHHHHHhhhhh-ccccccEEEeecCcchhheeecccCCCc-------------------
Confidence            32    34578999999999999998877654 3356789999999999999999988532                   


Q ss_pred             CCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          187 DDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       187 ~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                              ..|.++..+.+++|+..|++...++.++|.+.+.++.|||+.++++|+++|.++|+
T Consensus       136 --------~~r~~~~~e~i~~r~~~y~~~~~~l~~~y~~~~~~~~IDa~~s~eeV~~~I~~il~  191 (194)
T d1teva_         136 --------SGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD  191 (194)
T ss_dssp             --------SSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             --------ccCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence                    12467788999999999999999999999998899999999999999999999885

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-29  Score=200.93  Aligned_cols=187  Identities=27%  Similarity=0.521  Sum_probs=160.6

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHc-CCchHHHHHHHHHcCCCcCHHHHHHHHH
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIID  106 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~ll~  106 (251)
                      .|.+.+.|+|+     |||||||||+|+.|+++||+.+|++++++|+.... .+.++..++.+...+...++......+.
T Consensus         4 ~~~~~~iI~i~-----GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   78 (196)
T d1ukza_           4 SPDQVSVIFVL-----GGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLR   78 (196)
T ss_dssp             CTTTCEEEEEE-----CSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             CCCCCcEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHH
Confidence            35567788888     99999999999999999999999999999987654 5789999999999999999988888776


Q ss_pred             HHHcCC--CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCC
Q 025529          107 EAMKKP--SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVP  184 (251)
Q Consensus       107 ~~l~~~--~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~  184 (251)
                      ..+...  ....++++||+|++..|+..+...    ...++.+++|+++++++.+|+..+..                  
T Consensus        79 ~~~~~~~~~~~~~~vl~g~p~~~~q~~~~~~~----~~~~~~~i~l~~~~e~~~~R~~~~~~------------------  136 (196)
T d1ukza_          79 NAISDNVKANKHKFLIDGFPRKMDQAISFERD----IVESKFILFFDCPEDIMLERLLERGK------------------  136 (196)
T ss_dssp             HHHHHHHHTTCCEEEEETCCCSHHHHHHHHHH----TCCCSEEEEEECCHHHHHHHHHHHHH------------------
T ss_pred             HHHHhhhccCCCceeeeccchhHHHHHHHHHh----ccccceeeccCCCHHHHHHHHHhccc------------------
Confidence            654432  234689999999999998876654    36789999999999999999887642                  


Q ss_pred             CCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          185 GVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       185 ~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                               ...|.++..+.+++|+..|++...++.+||.+.+.++.||++.++++|+++|.++|+
T Consensus       137 ---------~~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~Id~~~s~eeV~~~I~~~i~  193 (196)
T d1ukza_         137 ---------TSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIR  193 (196)
T ss_dssp             ---------HHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             ---------cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence                     123467788999999999999999999999998999999999999999999999885

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.96  E-value=1.4e-28  Score=193.88  Aligned_cols=175  Identities=33%  Similarity=0.604  Sum_probs=151.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM  109 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l  109 (251)
                      .+||+|+|+     |||||||||+|+.|+++||+++++++++++.......+....+...+..+..++.......+...+
T Consensus         1 ~~Pm~I~i~-----GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   75 (189)
T d1zaka1           1 ADPLKVMIS-----GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERL   75 (189)
T ss_dssp             CCSCCEEEE-----ESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEE-----CCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHh
Confidence            378999999     999999999999999999999999999999999888889999999999999999988777776665


Q ss_pred             cCCC-CCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529          110 KKPS-CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD  188 (251)
Q Consensus       110 ~~~~-~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~  188 (251)
                      .... ...++|+||+|++..+...|.    ..+..|+.+|+|++|++++.+|+..+.                       
T Consensus        76 ~~~~~~~~~~vid~~~~~~~q~~~l~----~~~~~p~~~i~L~~~~e~l~~R~~~~~-----------------------  128 (189)
T d1zaka1          76 RQPDAQENGWLLDGYPRSYSQAMALE----TLEIRPDTFILLDVPDELLVERVVFDD-----------------------  128 (189)
T ss_dssp             HSHHHHHTCEEEESCCCSHHHHHHHH----TTTCCCSEEEEEECCHHHHHHHHTTTC-----------------------
T ss_pred             hhcccccCcEEeeccchhhHHHhhhh----hcccccchheeechhhhhhhhhccccc-----------------------
Confidence            5543 236899999999999988664    345789999999999999999986542                       


Q ss_pred             CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                  ..+.+++|+..|++...++.++|+  +.++.|||+.++++|+++|.++|+
T Consensus       129 ------------~~e~~~~rl~~y~~~~~~l~~~y~--~~~~~Id~~~~idev~~~I~~~l~  176 (189)
T d1zaka1         129 ------------TEEKVKLRLETYYQNIESLLSTYE--NIIVKVQGDATVDAVFAKIDELLG  176 (189)
T ss_dssp             ------------CTTHHHHHHHHHHHHHHHHHHTTC--CCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             ------------hHHHHHHHHHHHHHHHHHHHHHhC--CCEEEEECCCCHHHHHHHHHHHHH
Confidence                        235778999999999999999985  589999999999999999988874

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.75  E-value=1.3e-17  Score=128.16  Aligned_cols=163  Identities=15%  Similarity=0.174  Sum_probs=96.5

Q ss_pred             EEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025529           35 LILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC  114 (251)
Q Consensus        35 i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~  114 (251)
                      |+++     |+|||||||+|+.||+++|+++++.|+++.+..      |..+.+++...+   ...+.......+.....
T Consensus         5 Iil~-----G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~------g~~i~ei~~~~g---~~~~~~~~~~~l~~~~~   70 (170)
T d1e6ca_           5 IFMV-----GARGCGMTTVGRELARALGYEFVDTDIFMQHTS------GMTVADVVAAEG---WPGFRRRESEALQAVAT   70 (170)
T ss_dssp             EEEE-----SCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH------CSCHHHHHHHHH---HHHHHHHHHHHHHHHCC
T ss_pred             EEEE-----CCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhh------hhhhhhhhcccc---hHHHHHHHHHHHHhhcc
Confidence            7778     999999999999999999999999999886632      222233332211   12222333333333223


Q ss_pred             CCceEEeCC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          115 QKGFILDGF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       115 ~~~~Iidg~--~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      ...++..+.  +........    +...    ..+|||++|.+++.+|+..+....                        
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~----l~~~----~~~v~L~~~~e~l~~Rl~~~~~~~------------------------  118 (170)
T d1e6ca_          71 PNRVVATGGGMVLLEQNRQF----MRAH----GTVVYLFAPAEELALRLQASLQAH------------------------  118 (170)
T ss_dssp             SSEEEECCTTGGGSHHHHHH----HHHH----SEEEEEECCHHHHHHHHHHHHCSC------------------------
T ss_pred             ccceecccccchhhhHHHHh----hhcc----ceeEEEecCchhHHHHHhhccccc------------------------
Confidence            334444332  222222222    2222    468999999999999987653210                        


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                         .|+........+.+........++++-++   . +.||++.++++++++|.+.|.
T Consensus       119 ---~r~~~~~~~~~~~~~~~~~er~~lY~~~a---~-~~Id~~~~~~eiv~~Ii~~Lr  169 (170)
T d1e6ca_         119 ---QRPTLTGRPIAEEMEAVLREREALYQDVA---H-YVVDATQPPAAIVCELMQTMR  169 (170)
T ss_dssp             ---CCCCTTHHHHHHHHHHHHHHHHHHHHHHC---S-EEEETTSCHHHHHHHHHHHTT
T ss_pred             ---cCCCCCCCCHHHHHHHHHHHHHHHHHHcC---C-EEEcCCCCHHHHHHHHHHHcC
Confidence               12333333444444444444444433332   2 468999999999999988764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.3e-17  Score=127.55  Aligned_cols=166  Identities=13%  Similarity=0.121  Sum_probs=97.3

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHH----cCCchHHHHHHHHHcCCCcCHHHHHH
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA----AKTPLGIKAKEAMDKGELVSDDLVVG  103 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~----~~~~~~~~i~~~l~~~~~~~~~~~~~  103 (251)
                      .+..+..|+|+     |+|||||||+|+.|+++++.++++++.+......    ...+.........       ...+..
T Consensus         2 ~~~~~~iivl~-----G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~   69 (171)
T d1knqa_           2 TNHDHHIYVLM-----GVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPW-------LQALND   69 (171)
T ss_dssp             CCTTSEEEEEE-----CSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHH-------HHHHHH
T ss_pred             CCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHhhhhccCcceehhhhHHH-------HHHHHH
Confidence            35567788888     9999999999999999999999999875433211    1111111111000       001111


Q ss_pred             HHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCC
Q 025529          104 IIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKV  183 (251)
Q Consensus       104 ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~  183 (251)
                      .+.....   ....++++...........    +... ..+..+|+|++|++++.+|+..|..+                
T Consensus        70 ~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~v~l~~~~e~~~~Rl~~R~~~----------------  125 (171)
T d1knqa_          70 AAFAMQR---TNKVSLIVCSALKKHYRDL----LREG-NPNLSFIYLKGDFDVIESRLKARKGH----------------  125 (171)
T ss_dssp             HHHHHHH---HCSEEEEECCCCSHHHHHH----HHTT-CTTEEEEEEECCHHHHHHHHHTSTTC----------------
T ss_pred             HHHHHHh---ccCceEeeccchHHHHHHH----HHHh-CCCceEEeecCCHHHHHHHHHhCcCC----------------
Confidence            1211111   1223444332222222222    2222 44568899999999999999988421                


Q ss_pred             CCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529          184 PGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA  251 (251)
Q Consensus       184 ~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~  251 (251)
                                     ....+.++.+++.|..-       +.....++.||++.++|+++++|.+.|++
T Consensus       126 ---------------~~~~~~~~~~~~~~e~~-------~~~e~~~~~id~~~~~e~v~~~i~~~lk~  171 (171)
T d1knqa_         126 ---------------FFKTQMLVTQFETLQEP-------GADETDVLVVDIDQPLEGVVASTIEVIKK  171 (171)
T ss_dssp             ---------------CCCHHHHHHHHHHCCCC-------CTTCTTEEEEECSSCHHHHHHHHHHHHHC
T ss_pred             ---------------CccHHHHHhhHHHhhCC-------CcccCCEEEEeCCCCHHHHHHHHHHHhcC
Confidence                           12334455444433221       12234578899999999999999999864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-16  Score=127.12  Aligned_cols=173  Identities=18%  Similarity=0.106  Sum_probs=102.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID  106 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~  106 (251)
                      +++..|+|+     |++||||||+++.|++.+   |+.++.+.     +....++.+..+++++.....+.......+..
T Consensus         1 ~rG~lI~ie-----G~dGsGKsT~~~~L~~~L~~~g~~v~~~~-----~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~   70 (209)
T d1nn5a_           1 RRGALIVLE-----GVDRAGKSTQSRKLVEALCAAGHRAELLR-----FPERSTEIGKLLSSYLQKKSDVEDHSVHLLFS   70 (209)
T ss_dssp             CCCCEEEEE-----ESTTSSHHHHHHHHHHHHHHTTCCEEEEE-----SSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred             CCeeEEEEE-----CCCCCCHHHHHHHHHHHHHHCCCcEEEEe-----CCCCCcccchhhhhhhhcccccchhhhhhHHH
Confidence            467889999     999999999999999987   55555432     11223456677777776665555544332221


Q ss_pred             HH-Hc-------CCCCCCceEEeCCCCCHHHHHH--------HHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025529          107 EA-MK-------KPSCQKGFILDGFPRTEVQAQK--------LDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS  170 (251)
Q Consensus       107 ~~-l~-------~~~~~~~~Iidg~~~~~~~~~~--------l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~  170 (251)
                      .. ..       .+..+..+|+|.|..+......        +...+......||++|||++|++++.+|...++.    
T Consensus        71 ~~r~~~~~~i~~~l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~~----  146 (209)
T d1nn5a_          71 ANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHE----  146 (209)
T ss_dssp             HHHHTTHHHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----C----
T ss_pred             HHHHHHHHhHHHHhhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhccccc----
Confidence            11 10       0112345788987543222110        1111122335799999999999999999765431    


Q ss_pred             CceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhh-CCcEEEEcCCCChhHHHHHHHHHh
Q 025529          171 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       171 ~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                                                + -++.+.+.+..+.|.+       ++.+ .+.++.||++.++++|+++|.+++
T Consensus       147 --------------------------~-~E~~~~~~r~~~~Y~~-------l~~~~~~~~~~IDa~~~~e~V~~~I~~~v  192 (209)
T d1nn5a_         147 --------------------------R-YENGAFQERALRCFHQ-------LMKDTTLNWKMVDASKSIEAVHEDIRVLS  192 (209)
T ss_dssp             --------------------------T-TCSHHHHHHHHHHHHH-------HTTCTTSCEEEEETTSCHHHHHHHHHHHH
T ss_pred             --------------------------c-cccHHHHHHHHHHHHH-------HHHhCCCCEEEEECCCCHHHHHHHHHHHH
Confidence                                      1 1122333333333433       2222 246899999999999999998877


Q ss_pred             c
Q 025529          250 S  250 (251)
Q Consensus       250 ~  250 (251)
                      +
T Consensus       193 ~  193 (209)
T d1nn5a_         193 E  193 (209)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=8.2e-17  Score=123.00  Aligned_cols=112  Identities=18%  Similarity=0.203  Sum_probs=66.2

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCC-cCHHHHHHHHHHHHcC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL-VSDDLVVGIIDEAMKK  111 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~ll~~~l~~  111 (251)
                      |+|+|+     |+|||||||+++.|++++|++++++|.++.+..      |..+.+.+...+. .....-...+...+..
T Consensus         2 p~Ivli-----G~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~------g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~   70 (165)
T d2iyva1           2 PKAVLV-----GLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT------GRSIADIFATDGEQEFRRIEEDVVRAALAD   70 (165)
T ss_dssp             CSEEEE-----CSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------SSCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEE-----CCCCCCHHHHHHHHHHHhCCCeEeeccchhhhh------hhhhhhhhhhhhHHHHHHHHhhhhhhcccc
Confidence            578999     999999999999999999999999999886632      2222222221111 1011112222222221


Q ss_pred             CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          112 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       112 ~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                         ...++..|.+......  ....+     ....+|||+++++++.+|+..+.
T Consensus        71 ---~~~vi~~gg~~~~~~~--~~~~l-----~~~~~I~L~~~~~~~~~R~~~~~  114 (165)
T d2iyva1          71 ---HDGVLSLGGGAVTSPG--VRAAL-----AGHTVVYLEISAAEGVRRTGGNT  114 (165)
T ss_dssp             ---CCSEEECCTTGGGSHH--HHHHH-----TTSCEEEEECCHHHHHHHTTCCC
T ss_pred             ---cccccccccccccccc--ccccc-----cccceeeeeccchhhhhcccccc
Confidence               2345554443222111  11121     12457899999999999997653

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.67  E-value=9.6e-17  Score=122.22  Aligned_cols=109  Identities=15%  Similarity=0.116  Sum_probs=65.3

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS  113 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~  113 (251)
                      +|+++     |+|||||||+++.||+++|++++++|.++++..      |..+...+..............+...+..  
T Consensus         2 ~I~li-----G~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~------g~~i~~~~~~~g~~~~r~~e~~v~~~l~~--   68 (161)
T d1viaa_           2 NIVFI-----GFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF------NQKVSEIFEQKRENFFREQEQKMADFFSS--   68 (161)
T ss_dssp             CEEEE-----CCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH------TSCHHHHHHHHCHHHHHHHHHHHHHHHTT--
T ss_pred             cEEEE-----CCCCCCHHHHHHHHHHHhCCCEEecCchhhhHH------hhhhhhHHHhhhhccchhhhhhhchhhhh--
Confidence            47788     999999999999999999999999999886632      22222222222211111122223333322  


Q ss_pred             CCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          114 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       114 ~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                       ....|+....... ....    +    .....+|||++|.+++.+|+..+.
T Consensus        69 -~~~~v~~~~g~~~-~~~~----l----~~~~~vI~L~~s~~~l~~Rl~~~~  110 (161)
T d1viaa_          69 -CEKACIATGGGFV-NVSN----L----EKAGFCIYLKADFEYLKKRLDKDE  110 (161)
T ss_dssp             -CCSEEEECCTTGG-GSTT----G----GGGCEEEEEECCHHHHTTCCCGGG
T ss_pred             -ccccccccccchh-hHHH----H----HhCCeEEEeccchHHHHHHHcccc
Confidence             2344443221111 1111    1    234689999999999999987653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=3.9e-15  Score=117.89  Aligned_cols=172  Identities=15%  Similarity=0.193  Sum_probs=97.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcCCC-----cCHHH--
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL-----VSDDL--  100 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~--  100 (251)
                      ++..|+|+     |++||||||+++.|++++   |+..+...   +  .+.+++.|..+++.+.....     .....  
T Consensus         1 rgkfIviE-----G~dGsGKsT~~~~L~~~L~~~g~~~~~~~---~--ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~   70 (210)
T d4tmka_           1 RSKYIVIE-----GLEGAGKTTARNVVVETLEQLGIRDMVFT---R--EPGGTQLAEKLRSLLLDIKSVGDEVITDKAEV   70 (210)
T ss_dssp             CCCEEEEE-----ECTTSCHHHHHHHHHHHHHHTTCCCEEEE---E--SSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHH
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHHHHHHhCCCCeEEEe---c--CCCCccchhhhHHHHhccccccccccchHHHH
Confidence            46789999     999999999999999987   44322110   0  01234455566555544321     11110  


Q ss_pred             ----------HHHHHHHHHcCCCCCCceEEeCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHH
Q 025529          101 ----------VVGIIDEAMKKPSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE  158 (251)
Q Consensus       101 ----------~~~ll~~~l~~~~~~~~~Iidg~~~~------------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~  158 (251)
                                ....+...+.   .+..+|.|.+..+            ......+...+ .....||++|||++|++++.
T Consensus        71 ~l~~~~~~~~~~~~i~~~l~---~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~-~~~~~pdl~i~Ld~~~e~~~  146 (210)
T d4tmka_          71 LMFYAARVQLVETVIKPALA---NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAV-LGDFRPDLTLYLDVTPEVGL  146 (210)
T ss_dssp             HHHHHHHHHHHHHTHHHHHH---TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH---cCCcccccchhhhhhhhhccccccchhHHHHHHHHh-hcCCCCceEEEecchHHHHH
Confidence                      1111222221   2234566765322            11111122211 12367999999999999999


Q ss_pred             HHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCCh
Q 025529          159 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPP  238 (251)
Q Consensus       159 ~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~  238 (251)
                      +|+..|...   ++                        ......+.+++..+.|.       +++.+...++.|||+.++
T Consensus       147 ~Ri~~R~~~---~~------------------------~~~~~~~~~~~v~~~y~-------~~~~~~~~~~~IDa~~~~  192 (210)
T d4tmka_         147 KRARARGEL---DR------------------------IEQESFDFFNRTRARYL-------ELAAQDKSIHTIDATQPL  192 (210)
T ss_dssp             HHHHHHSSC---CT------------------------TTTSCHHHHHHHHHHHH-------HHHHTCTTEEEEETTSCH
T ss_pred             HHhhhcccc---ch------------------------hhhccHHHHHHHHHHHH-------HHHhcCCCEEEEECCCCH
Confidence            999988521   00                        01122333333333332       233444578999999999


Q ss_pred             hHHHHHHHHHhc
Q 025529          239 QEVTSEVQKALS  250 (251)
Q Consensus       239 eev~~~i~~~l~  250 (251)
                      |+|+++|.+.|+
T Consensus       193 e~v~~~I~~~i~  204 (210)
T d4tmka_         193 EAVMDAIRTTVT  204 (210)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988775

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.66  E-value=4.8e-16  Score=118.93  Aligned_cols=113  Identities=17%  Similarity=0.209  Sum_probs=69.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA  108 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~  108 (251)
                      +++|+|+|+     |||||||||+|+.|+++|+ +.+++.+++...........       ...+...........+...
T Consensus         3 pk~~~I~i~-----G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~   70 (174)
T d1y63a_           3 PKGINILIT-----GTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYD-------TELDTHIIEEKDEDRLLDF   70 (174)
T ss_dssp             CSSCEEEEE-----CSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC-------------CCCCCHHHHHHHHHH
T ss_pred             CCCCEEEEE-----eCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhhhhhHH-------HhhcccchHHHHHHHHHHH
Confidence            578999999     9999999999999999996 57777766654421111110       1111222222222222222


Q ss_pred             H-cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          109 M-KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       109 l-~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      + .......++++++++......           ..++.+|+|+||++++.+|+..|.
T Consensus        71 ~~~~i~~~~~~~~~~~~~~~~~~-----------~~~~~vI~L~~~~e~l~~Rl~~R~  117 (174)
T d1y63a_          71 MEPIMVSRGNHVVDYHSSELFPE-----------RWFHMVVVLHTSTEVLFERLTKRQ  117 (174)
T ss_dssp             HHHHHTSSSEEEEECSCCTTSCG-----------GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             HHhhhhhcccccccHHHHHHHHH-----------hcCceEEEEECCHHHHHHHHHhCC
Confidence            2 222334577888876543211           235789999999999999999884

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.65  E-value=1.2e-15  Score=117.75  Aligned_cols=178  Identities=11%  Similarity=0.115  Sum_probs=95.0

Q ss_pred             cccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCC
Q 025529           41 WLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ  115 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~  115 (251)
                      +|+|+|||||||+++.|+++|+     +..++.++..+...........  ...+..................+......
T Consensus         5 ~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (190)
T d1khta_           5 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSD--RDQMRKMDPETQKRIQKMAGRKIAEMAKE   82 (190)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSS--GGGGSSCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhh--hhhhhhhhchhhHHHHHHHHHHHHHHhCC
Confidence            3349999999999999999884     3455667766654432210000  00000000000011111122222222234


Q ss_pred             CceEEeCCCCCHHHHHHH---HHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529          116 KGFILDGFPRTEVQAQKL---DEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE  192 (251)
Q Consensus       116 ~~~Iidg~~~~~~~~~~l---~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~  192 (251)
                      +.+++|+++....+...+   ..... ....|+.+|+|+++++++.+|+..+...                         
T Consensus        83 ~~vl~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~~~~~-------------------------  136 (190)
T d1khta_          83 SPVAVDTHSTVSTPKGYLPGLPSWVL-NELNPDLIIVVETTGDEILMRRMSDETR-------------------------  136 (190)
T ss_dssp             SCEEEECCSEEEETTEEEESSCHHHH-HHHCCSEEEEEECCHHHHHHHHHTSSSC-------------------------
T ss_pred             CeEEECCcccchHHHHHHHhhhhhhh-hhccccceeeecCCHHHHHHHHHHhccc-------------------------
Confidence            578888876532111000   00000 0146789999999999999998876421                         


Q ss_pred             CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                         .+.......++ +...++..+......+.....++.++++.++|+++++|.++|+
T Consensus       137 ---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~lk  190 (190)
T d1khta_         137 ---VRDLDTASTIE-QHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVLR  190 (190)
T ss_dssp             ---SSSCCCHHHHH-HHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred             ---cCCcccHHHHH-HHHHHHHHHHHHHHHhhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence               02233333333 3334444444444444443345567788999999999999874

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.63  E-value=7.7e-16  Score=117.33  Aligned_cols=117  Identities=15%  Similarity=0.135  Sum_probs=69.8

Q ss_pred             ccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCceEEe
Q 025529           42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILD  121 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iid  121 (251)
                      |+|||||||||+|+.|+++++..++...+.++.................    ......+.......+   ....++|+|
T Consensus         7 i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~iid   79 (176)
T d2bdta1           7 ITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELL----ALTWKNITDLTVNFL---LAQNDVVLD   79 (176)
T ss_dssp             EECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHH----HHHHHHHHHHHHHHH---HTTCEEEEE
T ss_pred             EECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHH----HHHHHHHHHHHHHHH---hcCCCcccc
Confidence            3399999999999999999988766555555443332211111111000    000122222222222   234578899


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          122 GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       122 g~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      +..........+..........+..+++|.++.+++.+|+..|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~  123 (176)
T d2bdta1          80 YIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK  123 (176)
T ss_dssp             SCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred             cccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCC
Confidence            88766555544444444444455678999999999999999885

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.61  E-value=2.6e-15  Score=112.40  Aligned_cols=116  Identities=16%  Similarity=0.118  Sum_probs=79.1

Q ss_pred             ccCCCCCChhHHHHHHHHHh-CCceechhHHHHHHHHcCCchH----HHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCC
Q 025529           42 LAGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLG----IKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK  116 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~~-~~~~i~~~~li~~~~~~~~~~~----~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~  116 (251)
                      |+|+|||||||+|+.|++.. ++.+++.+++.+.........+    ......       ...+....+...+.......
T Consensus         7 i~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~   79 (152)
T d1ly1a_           7 TIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILYGGDSVK   79 (152)
T ss_dssp             EECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHTSCSSCC
T ss_pred             EECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhHH-------HHHHHHHHHHHHHHhhccCC
Confidence            44999999999999987654 7899999987655433221110    110000       02334455555555555556


Q ss_pred             ceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          117 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       117 ~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      .+|+|+..........+.+++...+. ...+|+|++|.+++.+|...|.
T Consensus        80 ~vi~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~e~~~~R~~~R~  127 (152)
T d1ly1a_          80 GVIISDTNLNPERRLAWETFAKEYGW-KVEHKVFDVPWTELVKRNSKRG  127 (152)
T ss_dssp             EEEECSCCCSHHHHHHHHHHHHHHTC-EEEEEECCCCHHHHHHHHTTCG
T ss_pred             CcccccccCCHHHHHHHHHhhhhhcc-chhhhhcCCCHHHHHHHHHccC
Confidence            78899988888777777777666655 4578899999999999999885

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.60  E-value=8.5e-15  Score=113.25  Aligned_cols=174  Identities=12%  Similarity=0.090  Sum_probs=97.2

Q ss_pred             cCCCCCChhHHHHHHHHHhC-----CceechhHHHHHHHHcCCchH-H-HHHHHHHcCCCcCHHHHHHHHHHHHcCCCCC
Q 025529           43 AGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLG-I-KAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ  115 (251)
Q Consensus        43 ~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~~~~~~~~~-~-~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~  115 (251)
                      +|+|||||||+++.|+++|+     +.+++.++..+.......... . ....................+...... ...
T Consensus         7 ~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   85 (194)
T d1nksa_           7 TGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEARA-GGE   85 (194)
T ss_dssp             EECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-TCS
T ss_pred             ECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhhccccchhhcccCHHHHHHHHHHHHHH-hCC
Confidence            39999999999999999984     345566676655444321110 0 000000000000001111112222211 223


Q ss_pred             CceEEeCCCCCHHHH-------HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529          116 KGFILDGFPRTEVQA-------QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD  188 (251)
Q Consensus       116 ~~~Iidg~~~~~~~~-------~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~  188 (251)
                      .++++++++......       ..+...     ..|+.+|||+++++++.+|+..|...                     
T Consensus        86 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~~~~~~~~R~~~r~~~---------------------  139 (194)
T d1nksa_          86 GYLFIDTHAVIRTPSGYLPGLPSYVITE-----INPSVIFLLEADPKIILSRQKRDTTR---------------------  139 (194)
T ss_dssp             SEEEEEECSEEEETTEEEESSCHHHHHH-----HCCSEEEEEECCHHHHHHHHHHCTTT---------------------
T ss_pred             CcEEEEccCchHHHHHHHHhHHHHHHhh-----hccccceEEecCHHHHHHHHHHhhhc---------------------
Confidence            456676654321110       111111     35899999999999999999877421                     


Q ss_pred             CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                             .|.....+.+.++...+..........+...+.++.++++.++++++++|.+.|+
T Consensus       140 -------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~ik  194 (194)
T d1nksa_         140 -------NRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSMK  194 (194)
T ss_dssp             -------CCCCCCSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             -------ccccchHHHHHHHHHHHHHhHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence                   1334455666777766666555444444444455666678999999999998874

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.59  E-value=1.3e-14  Score=114.54  Aligned_cols=160  Identities=16%  Similarity=0.161  Sum_probs=96.6

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHH-------------------
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD-------------------   99 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~-------------------   99 (251)
                      ||+|+|++||||||+|+.|.+ +|++++++|.+.+..+.++......+.+.+......++.                   
T Consensus         4 iIgITG~igSGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~~~~   82 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDKL   82 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhhhhhhh
Confidence            577889999999999999975 899999999999887777776666666555433322221                   


Q ss_pred             ----HHHHHH----HHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCC
Q 025529          100 ----LVVGII----DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG  171 (251)
Q Consensus       100 ----~~~~ll----~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~  171 (251)
                          .++..+    ....... ....++++. |...+..         ....++.+|++++|+++..+|+..|.      
T Consensus        83 ~l~~i~hp~v~~~~~~~~~~~-~~~~vv~e~-~ll~e~~---------~~~~~d~ii~v~~~~~~r~~R~~~R~------  145 (205)
T d1jjva_          83 WLNNLLHPAIRERMKQKLAEQ-TAPYTLFVV-PLLIENK---------LTALCDRILVVDVSPQTQLARSAQRD------  145 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC-CSSEEEEEC-TTTTTTT---------CGGGCSEEEEEECCHHHHHHHHC---------
T ss_pred             HhhcccCHHHHHHHHHHHhhc-cCCeEEEEe-ccccccc---------hhhhhhheeeecchHHHHHHHHHhcC------
Confidence                111111    1222221 222345564 4332211         11457899999999999999999873      


Q ss_pred             ceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          172 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       172 ~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                                                 +.+.+.+++|+..... ...... ++   .+ .|+.+++.++..+.|.+.+
T Consensus       146 ---------------------------~~s~e~~~~~~~~Q~~-~~~k~~-~a---D~-vI~N~~~l~~~~~~l~~~i  190 (205)
T d1jjva_         146 ---------------------------NNNFEQIQRIMNSQVS-QQERLK-WA---DD-VINNDAELAQNLPHLQQKV  190 (205)
T ss_dssp             -----------------------------CHHHHHHHHHHSCC-HHHHHH-HC---SE-EEECCSCHHHHHHHHHHHH
T ss_pred             ---------------------------CchHHHHHHHHHhCCC-HHHHHH-hC---CE-EEECCCChHHHHHHHHHHH
Confidence                                       4456778877764211 111111 22   23 4788888888777776554

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=2.5e-14  Score=113.64  Aligned_cols=179  Identities=17%  Similarity=0.122  Sum_probs=94.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCC-CcCHHHHHHHHH-H
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-LVSDDLVVGIID-E  107 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~ll~-~  107 (251)
                      .+++.|+|+     |+.||||||+++.|++++.-...-+.     ....+++.|..+++++.... .+++....-+.. .
T Consensus         1 ~kGk~I~iE-----G~DGsGKST~~~~L~~~L~~~~~~~~-----~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~   70 (214)
T d1tmka_           1 GRGKLILIE-----GLDRTGKTTQCNILYKKLQPNCKLLK-----FPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSAN   70 (214)
T ss_dssp             CCCCEEEEE-----ESTTSSHHHHHHHHHHHTTTSEEEEE-----SSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHH
T ss_pred             CCeEEEEEE-----CCCCCcHHHHHHHHHHHHHhCCEEEE-----ECCCCchHhHhHHHhhhhccccccchHHHHHHHHH
Confidence            368899999     99999999999999999853322221     12234566777777775443 233332221111 1


Q ss_pred             HHc-------CCCCCCceEEeCCCCCHHHHH--------HHHHHH--HhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025529          108 AMK-------KPSCQKGFILDGFPRTEVQAQ--------KLDEML--EKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS  170 (251)
Q Consensus       108 ~l~-------~~~~~~~~Iidg~~~~~~~~~--------~l~~~~--~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~  170 (251)
                      +..       ....+..+|.|.|..+.....        .+.+..  ......||++|||++++++..+|...+..+   
T Consensus        71 r~~~~~~i~~~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~~---  147 (214)
T d1tmka_          71 RWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDE---  147 (214)
T ss_dssp             HHTTHHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCSS---
T ss_pred             HHHHHHHHHHHHhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccchh---
Confidence            111       111234577898754321110        012221  112358999999999999888886555311   


Q ss_pred             CceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHh
Q 025529          171 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKAL  249 (251)
Q Consensus       171 ~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l  249 (251)
                                                 .-++.+.+++-.+.|.+........  ....++.||++ .++++|.+.|.+.|
T Consensus       148 ---------------------------~~e~~~~~~~v~~~Y~~l~~~~~~~--~~~~~~iID~s~~~~eev~~~I~~~v  198 (214)
T d1tmka_         148 ---------------------------RYETVKFQEKVKQTFMKLLDKEIRK--GDESITIVDVTNKGIQEVEALIWQIV  198 (214)
T ss_dssp             ---------------------------TTCCHHHHHHHHHHHHHHHHHHHHT--TCTTEEEEECTTCCHHHHHHHHHHHH
T ss_pred             ---------------------------hhhhHHHHHHHHHHHHHHHHHhhhh--CCCcEEEEECCCCCHHHHHHHHHHHH
Confidence                                       0112333333335555443322111  23468889974 79999999998877


Q ss_pred             c
Q 025529          250 S  250 (251)
Q Consensus       250 ~  250 (251)
                      +
T Consensus       199 ~  199 (214)
T d1tmka_         199 E  199 (214)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.55  E-value=1.7e-14  Score=109.83  Aligned_cols=107  Identities=24%  Similarity=0.289  Sum_probs=66.4

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP  112 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~  112 (251)
                      |+|+|+     |||||||||+|+.|+++||++++++++.++.........      ............+...+.....  
T Consensus         5 ~~I~i~-----G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--   71 (173)
T d1rkba_           5 PNILLT-----GTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYD------EEYDCPILDEDRVVDELDNQMR--   71 (173)
T ss_dssp             CCEEEE-----CSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCCCC------SSSSCCCBCHHHHHHHHHHHHH--
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccchh------HHhhhhhHHHHHHHHHhhhhhh--
Confidence            567788     999999999999999999999999999877532111000      0011122223333333332221  


Q ss_pred             CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                        ..+..++++.......           .....+|+|+|+++++.+|+..|.
T Consensus        72 --~~~~~~~~~~~~~~~~-----------~~~~~~i~l~~~~~~~~~Rl~~r~  111 (173)
T d1rkba_          72 --EGGVIVDYHGCDFFPE-----------RWFHIVFVLRTDTNVLYERLETRG  111 (173)
T ss_dssp             --HCCEEEECSCCTTSCG-----------GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             --cCCcccchhHHHHHHH-----------hcCCCcceecCCHHHHHHHHHhcC
Confidence              1234455444322111           234689999999999999999874

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.54  E-value=1.8e-14  Score=112.19  Aligned_cols=164  Identities=13%  Similarity=0.040  Sum_probs=91.5

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchH---------------HHHHHHHHcCCCc
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLG---------------IKAKEAMDKGELV   96 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~---------------~~i~~~l~~~~~~   96 (251)
                      ||.|.+.     |++||||||+|+.|. .+|++++++|.+.+....+.....               ..+...+......
T Consensus         3 p~IIgit-----G~~gSGKstva~~l~-~~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~   76 (191)
T d1uf9a_           3 PIIIGIT-----GNIGSGKSTVAALLR-SWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPER   76 (191)
T ss_dssp             CEEEEEE-----ECTTSCHHHHHHHHH-HTTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHH
T ss_pred             CEEEEEE-----CCCCCCHHHHHHHHH-HCCCeEEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCchh
Confidence            4455555     999999999999995 589999999988777655432211               1111111110000


Q ss_pred             ---CHHHHHH----HHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025529           97 ---SDDLVVG----IIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS  169 (251)
Q Consensus        97 ---~~~~~~~----ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~  169 (251)
                         -...+..    .+....... ....+|+++.+......          ...+|.+|+++||.+++.+|+..|.    
T Consensus        77 ~~~l~~~~~~~~~~~~~~~~~~~-~~~~vi~e~~~~~~~~~----------~~~~d~vI~v~a~~e~r~~Rl~~R~----  141 (191)
T d1uf9a_          77 LKALEAVVHPEVRRLLMEELSRL-EAPLVFLEIPLLFEKGW----------EGRLHGTLLVAAPLEERVRRVMARS----  141 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC-CCSEEEEECTTTTTTTC----------GGGSSEEEEECCCHHHHHHHHHTTT----
T ss_pred             hhhhhhhhhHHHHHHHHhhhhhc-ccceEEEEeeccccccc----------cccceeEEEEecchhhHHHHHHhcc----
Confidence               0001111    111111111 22345677643221111          1357899999999999999999884    


Q ss_pred             CCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          170 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                                                   +.+.+.+..+++..    .+....... ..+ .|+.+.+++++..+|...+
T Consensus       142 -----------------------------~~~~~~~~~~~~~q----~~~~~~~~~-aD~-vI~N~~s~~~l~~~v~~il  186 (191)
T d1uf9a_         142 -----------------------------GLSREEVLARERAQ----MPEEEKRKR-ATW-VLENTGSLEDLERALKAVL  186 (191)
T ss_dssp             -----------------------------CCTTHHHHHHHTTS----CCHHHHHHH-CSE-EECCSSHHHHHHHHHHHHH
T ss_pred             -----------------------------cchHHHHHHHHHhC----CCHHHHHHh-CCE-EEECCCCHHHHHHHHHHHH
Confidence                                         22234444444321    111111111 123 5888899999999998887


Q ss_pred             cC
Q 025529          250 SA  251 (251)
Q Consensus       250 ~~  251 (251)
                      ++
T Consensus       187 ~~  188 (191)
T d1uf9a_         187 AE  188 (191)
T ss_dssp             HS
T ss_pred             HH
Confidence            63

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.52  E-value=1.9e-14  Score=114.49  Aligned_cols=40  Identities=38%  Similarity=0.573  Sum_probs=36.0

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV   76 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~   76 (251)
                      +++|+|.     |||||||||+|+.||++||++|+|+++++|...
T Consensus         3 ~i~IaId-----Gp~GsGKgT~ak~La~~lg~~~istGdl~R~~a   42 (223)
T d1q3ta_           3 TIQIAID-----GPASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT   42 (223)
T ss_dssp             CCEEEEE-----CSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             ceEEEEE-----CCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHH
Confidence            4566777     999999999999999999999999999999753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=6.6e-14  Score=110.62  Aligned_cols=161  Identities=17%  Similarity=0.150  Sum_probs=96.6

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHHH-------------
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDL-------------  100 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~-------------  100 (251)
                      ||+|+|++||||||+|+.|+ .+|++++++|.+.++...++......+.+.+...     ..+....             
T Consensus         5 iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~~~~   83 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKN   83 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhHHHHH
Confidence            46777999999999999996 5799999999999887776665555554443322     1122111             


Q ss_pred             -----HHHHHHHHHcC---CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCc
Q 025529          101 -----VVGIIDEAMKK---PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGR  172 (251)
Q Consensus       101 -----~~~ll~~~l~~---~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~  172 (251)
                           ++..+...+..   ......++++. |...+..         ....++.+|++++|+++..+|+..|.       
T Consensus        84 ~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~-~ll~e~~---------~~~~~~~iI~V~a~~e~r~~R~~~R~-------  146 (208)
T d1vhta_          84 WLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVENS---------LYKKANRVLVVDVSPETQLKRTMQRD-------  146 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTTT---------GGGGCSEEEEEECCHHHHHHHHHHHH-------
T ss_pred             HHHHHhHHHHHHHHHHHHHHhhcCCcceee-eeccccc---------ccccCCEEEEEeCCHHHHHHHHHHhh-------
Confidence                 11222222111   01122344443 3221111         11457889999999999999999884       


Q ss_pred             eecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          173 TYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       173 ~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                                                ..+.+.++.|+..... +   ....... . ++|+.+.+++++.++|.+.+
T Consensus       147 --------------------------~~~~~~~~~~~~~Q~~-~---~~k~~~a-D-~vI~N~~~le~l~~~v~~l~  191 (208)
T d1vhta_         147 --------------------------DVTREHVEQILAAQAT-R---EARLAVA-D-DVIDNNGAPDAIASDVARLH  191 (208)
T ss_dssp             --------------------------TCCHHHHHHHHHHSCC-H---HHHHHHC-S-EEEECSSCTTSHHHHHHHHH
T ss_pred             --------------------------hhhHHHHHHHHHhCCC-H---HHHHHhC-C-EEEECCCCHHHHHHHHHHHH
Confidence                                      3345666666654211 1   1111111 2 45788899999988877654

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=2.5e-13  Score=106.81  Aligned_cols=77  Identities=17%  Similarity=0.139  Sum_probs=46.6

Q ss_pred             CCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHhccHHH
Q 025529          141 GKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPV  219 (251)
Q Consensus       141 ~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~-~~y~~~~~~~  219 (251)
                      ...||++|+|++|++++.+|+.+|.......              .        ..+-+.+. .+.+++ +.|.+...  
T Consensus       130 ~~~Pd~~i~L~~~~e~~~~Ri~~R~~~~~~~--------------~--------~d~~e~~~-~y~~~~~~~Y~~~~~--  184 (208)
T d1gsia_         130 LPKPDWQVLLAVSAELAGERSRGRAQRDPGR--------------A--------RDNYERDA-ELQQRTGAVYAELAA--  184 (208)
T ss_dssp             CCCCSEEEEECCCHHHHHHHHHHHHHHCTTC--------------C--------CCTTTTCH-HHHHHHHHHHHHHHH--
T ss_pred             ccCCceeEEecccHHHHHHHHHhhhcccccc--------------c--------ccchhhHH-HHHHHHHHHHHHHHH--
Confidence            3679999999999999999999885221100              0        00111122 333333 33333211  


Q ss_pred             HHHHhhCCcEEEEcCCCChhHHHHHH
Q 025529          220 IDYYSKKGIVAQLHAEKPPQEVTSEV  245 (251)
Q Consensus       220 ~~~~~~~~~~~~id~~~~~eev~~~i  245 (251)
                        .. ..+.+++||++.++++|.++|
T Consensus       185 --~~-~~~~~~vIDa~~~~e~V~~~i  207 (208)
T d1gsia_         185 --QG-WGGRWLVVGADVDPGRLAATL  207 (208)
T ss_dssp             --HT-TTSEEEEECTTCCHHHHHHHH
T ss_pred             --hc-CCCCEEEEeCCCCHHHHHHhh
Confidence              11 123589999999999999887

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.7e-13  Score=102.91  Aligned_cols=36  Identities=19%  Similarity=0.418  Sum_probs=32.2

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA   74 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~   74 (251)
                      .|+|+     |||||||||+|+.||++|++++++.+.....
T Consensus         4 ~I~l~-----G~~GsGKSTvak~La~~L~~~~id~~~~~~~   39 (169)
T d1kaga_           4 NIFLV-----GPMGAGKSTIGRQLAQQLNMEFYDSDQEIEK   39 (169)
T ss_dssp             CEEEE-----CCTTSCHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred             eEEEE-----CCCCCCHHHHHHHHHHHhCCCeEeechhHHh
Confidence            47777     9999999999999999999999999876554

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.4e-13  Score=109.10  Aligned_cols=41  Identities=24%  Similarity=0.421  Sum_probs=36.6

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA   77 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~   77 (251)
                      +|.|+|.     |||||||||+|+.|+++||++|+|+++++|....
T Consensus         3 ~piI~I~-----GppGSGKgT~ak~La~~~gl~~iStGdLlR~~a~   43 (225)
T d1ckea_           3 APVITID-----GPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLAL   43 (225)
T ss_dssp             SCEEEEE-----CCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred             CCEEEEE-----CCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHHH
Confidence            3467777     9999999999999999999999999999998654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.37  E-value=2.8e-13  Score=103.18  Aligned_cols=27  Identities=22%  Similarity=0.151  Sum_probs=23.2

Q ss_pred             ccCCCCCChhHHHHHHHHHhCCceech
Q 025529           42 LAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      |+|+|||||||+|+.|+++++..++++
T Consensus         8 l~G~~GsGKsTva~~L~~~l~~~~~~~   34 (178)
T d1qhxa_           8 LNGGSSAGKSGIVRCLQSVLPEPWLAF   34 (178)
T ss_dssp             EECCTTSSHHHHHHHHHHHSSSCEEEE
T ss_pred             EECCCCCCHHHHHHHHHHHcCCCeEEe
Confidence            349999999999999999998776554

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.37  E-value=3.1e-13  Score=102.97  Aligned_cols=113  Identities=19%  Similarity=0.167  Sum_probs=64.7

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh-HHHHHHHHcCC-----chHHHHHHHHHcCCCcCHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG-DMLRAAVAAKT-----PLGIKAKEAMDKGELVSDDLVVGII  105 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~-~li~~~~~~~~-----~~~~~i~~~l~~~~~~~~~~~~~ll  105 (251)
                      +..|+|.     |||||||||+|+.|++++|.++++++ +.++..+....     +.........       .......+
T Consensus         4 g~iI~l~-----G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~   71 (176)
T d1zp6a1           4 GNILLLS-----GHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMI-------MQIAADVA   71 (176)
T ss_dssp             TEEEEEE-----ECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHH-------HHHHHHHH
T ss_pred             CeEEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHH-------HHHHHHHH
Confidence            4567777     99999999999999999998876542 33333322111     0000000000       01111222


Q ss_pred             HHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          106 DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       106 ~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ....   .....+|+|+.+....... +.    .. ..+..+++|+++++++.+|+..|.
T Consensus        72 ~~~~---~~~~~vi~~~~~~~~~~~~-~~----~~-~~~~~~i~l~~~~e~~~~R~~~R~  122 (176)
T d1zp6a1          72 GRYA---KEGYFVILDGVVRPDWLPA-FT----AL-ARPLHYIVLRTTAAEAIERCLDRG  122 (176)
T ss_dssp             HHHH---HTSCEEEECSCCCTTTTHH-HH----TT-CSCEEEEEEECCHHHHHHHHHTTC
T ss_pred             HHHH---hcCCCeEecccccHHHHHH-HH----hc-ccccccccCCCCHHHHHHHHHhCC
Confidence            2211   2334678888765432222 11    11 345678999999999999999884

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=1.6e-12  Score=99.56  Aligned_cols=105  Identities=15%  Similarity=0.139  Sum_probs=80.2

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA  108 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~  108 (251)
                      ..+|..|++.     |+|||||||+|+.|++.+++.+++.|++...                        ..+...+...
T Consensus        11 ~~~p~liil~-----G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~------------------------~~~~~~~~~~   61 (172)
T d1yj5a2          11 SPNPEVVVAV-----GFPGAGKSTFIQEHLVSAGYVHVNRDTLGSW------------------------QRCVSSCQAA   61 (172)
T ss_dssp             CSSCCEEEEE-----CCTTSSHHHHHHHHTGGGTCEEEEHHHHCSH------------------------HHHHHHHHHH
T ss_pred             CCCCEEEEEE-----CCCCCCHHHHHHHHHHhcCCEEEchHHHHHH------------------------HHHHHHHHHH
Confidence            3467788888     9999999999999999999999999886422                        1122233333


Q ss_pred             HcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025529          109 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI  166 (251)
Q Consensus       109 l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~  166 (251)
                      +..   +..+|+|....+..+...+..+....+..+ .+|+|++|.+++.+|...|..
T Consensus        62 l~~---g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~-~~v~l~~~~e~~~~Rn~~R~~  115 (172)
T d1yj5a2          62 LRQ---GKRVVIDNTNPDVPSRARYIQCAKDAGVPC-RCFNFCATIEQARHNNRFREM  115 (172)
T ss_dssp             HHT---TCCEEEESCCCSHHHHHHHHHHHHHHTCCE-EEEEECCCHHHHHHHHHHHHH
T ss_pred             HHC---CCCceeeCcCCCHHHHHHHHHHHHhcCCCE-EEEEeCCCHHHHHHHHHHhcc
Confidence            322   457999998888888888777777676654 578899999999999988853

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.2e-11  Score=98.81  Aligned_cols=81  Identities=9%  Similarity=0.003  Sum_probs=48.8

Q ss_pred             CCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHh---ccHH
Q 025529          142 KKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHK---QTEP  218 (251)
Q Consensus       142 ~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~---~~~~  218 (251)
                      ..||++|||++|++++.+|+..|....+                            ...+.+.+++-.+.|.+   ....
T Consensus       151 ~~Pdl~i~Ld~~pe~~~~Ri~~r~~~~e----------------------------~~~~~~yl~~l~~~y~~~~~~~~~  202 (241)
T d1p5zb_         151 LELDGIIYLQATPETCLHRIYLRGRNEE----------------------------QGIPLEYLEKLHYKHESWLLHRTL  202 (241)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHHCCGGG----------------------------TTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCceeeeeccCHHHHHHHHHhhcchhh----------------------------hcCCHHHHHHHHHHHHHHHHHhhh
Confidence            4689999999999999999987742110                            11122222222222221   1100


Q ss_pred             -HHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          219 -VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       219 -~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                       ..........+++||++.++++++++|.+.|+
T Consensus       203 ~~~~~~~~~~~~~~ID~~~~ie~v~~~i~~~i~  235 (241)
T d1p5zb_         203 KTNFDYLQEVPILTLDVNEDFKDKYESLVEKVK  235 (241)
T ss_dssp             CCSCGGGGGSCEEEEECCSCHHHHHHHHHHHHH
T ss_pred             hhhHhhcCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence             00001112468899999999999999988875

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.8e-11  Score=98.10  Aligned_cols=30  Identities=27%  Similarity=0.389  Sum_probs=26.2

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL   66 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i   66 (251)
                      |.+|+|+     |+.||||||+++.|+++++-..+
T Consensus         2 pk~IviE-----G~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           2 PRRLSIE-----GNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CEEEEEE-----ECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CeEEEEE-----CCCCCcHHHHHHHHHHHHhhcCC
Confidence            6789999     99999999999999999965443

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=6.9e-12  Score=97.53  Aligned_cols=34  Identities=21%  Similarity=0.107  Sum_probs=29.6

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL   66 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i   66 (251)
                      .+.+|+.|+|.     |+.||||||+++.|+++++...+
T Consensus         5 ~~~kp~~I~ie-----G~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           5 EGTQPFTVLIE-----GNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             TTCCCEEEEEE-----CSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             CCCCceEEEEE-----CCCCCCHHHHHHHHHHHhCCcEE
Confidence            46789999999     99999999999999999965443

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.1e-11  Score=97.59  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=21.9

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCC
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      ||+|+|++||||||+|+.|++.++.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhch
Confidence            4566699999999999999999864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.05  E-value=1.9e-10  Score=90.31  Aligned_cols=122  Identities=12%  Similarity=0.060  Sum_probs=67.1

Q ss_pred             ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh----CCc--eechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHH
Q 025529           27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY----CLC--HLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL  100 (251)
Q Consensus        27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~----~~~--~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~  100 (251)
                      +.+.+++.|.|.     |.|||||||+|+.|++++    +.+  +++.|. +|+.+...-.+....+.          ..
T Consensus        19 ~~~~kg~vIwlt-----GlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~-iR~~l~~~l~ys~~~r~----------~~   82 (208)
T d1m7ga_          19 LRNQRGLTIWLT-----GLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN-IRFGLNKDLGFSEADRN----------EN   82 (208)
T ss_dssp             HHTSSCEEEEEE-----CSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH-HTTTTTTTCCSSHHHHH----------HH
T ss_pred             HhCCCCeEEEEE-----CCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH-HHHhhcCCCCCChhHHH----------HH
Confidence            345678778888     999999999999999766    433  455544 45433322111111111          11


Q ss_pred             HHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHh-----cCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          101 VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEK-----QGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       101 ~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~-----~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                      ...+.............+|++.............+++..     ....+-+.||++||.+++.+|...+
T Consensus        83 ~~r~~~~a~~~~~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~  151 (208)
T d1m7ga_          83 IRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKG  151 (208)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTC
T ss_pred             HHHHHHHHHHHhccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhccc
Confidence            111221111111223346666655555544444444321     1233457899999999999986543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=9.7e-11  Score=90.27  Aligned_cols=34  Identities=21%  Similarity=0.189  Sum_probs=28.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      +++.|+|.     |+|||||||+|+.|+++++..+++.+
T Consensus        18 ~g~vI~L~-----G~pGSGKTTiAk~La~~l~~~~~~~~   51 (195)
T d1x6va3          18 RGCTVWLT-----GLSGAGKTTVSMALEEYLVCHGIPCY   51 (195)
T ss_dssp             CCEEEEEE-----SSCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCeEEEEE-----CCCCCCHHHHHHHHHHHHHhcCCCcc
Confidence            56777788     99999999999999999976555544

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=3.9e-09  Score=81.07  Aligned_cols=163  Identities=17%  Similarity=0.141  Sum_probs=86.1

Q ss_pred             EEEEeecccCCCCCChhHHHHHHHHHhCCce-echhHHHHHHHHc----CC----chHHHHHHHHHcCCCcCHH------
Q 025529           35 LILIIVWLAGPPGSGKGTQSPIIKDEYCLCH-LATGDMLRAAVAA----KT----PLGIKAKEAMDKGELVSDD------   99 (251)
Q Consensus        35 i~i~ii~i~G~~gsGKST~a~~La~~~~~~~-i~~~~li~~~~~~----~~----~~~~~i~~~l~~~~~~~~~------   99 (251)
                      |+|+     ||+||||||+++.|++.+.-.+ +.....-|. ..+    +.    -....+.+...+|..+...      
T Consensus         4 Ivl~-----GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~-~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~   77 (186)
T d1gkya_           4 IVIS-----GPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT-PRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNY   77 (186)
T ss_dssp             EEEE-----CCTTSSHHHHHHHHHHHCTTTEEECCEEECSC-CCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             EEEE-----CCCCCCHHHHHHHHHHhCCcceeEEEeeccCC-CCCCCcCCccceeccHHHHHHHHhcccceeeeEEccce
Confidence            7777     9999999999999999874211 111000000 000    00    0112334444444332110      


Q ss_pred             --HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceeccc
Q 025529          100 --LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTK  177 (251)
Q Consensus       100 --~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~  177 (251)
                        +....+...+.   .+..+|+++.+....+..   ..   .+..+..++++..+.+++.+|+..|.            
T Consensus        78 Yg~~~~~i~~~~~---~g~~~i~~~~~~~~~~lk---~~---~~~~~~~i~~~~~~~e~l~~RL~~Rg------------  136 (186)
T d1gkya_          78 YGSTVASVKQVSK---SGKTCILDIDMQGVKSVK---AI---PELNARFLFIAPPSVEDLKKRLEGRG------------  136 (186)
T ss_dssp             EEEEHHHHHHHHH---HTSEEEEECCHHHHHHHH---TC---GGGCCEEEEEECSCHHHHHHHHHHHS------------
T ss_pred             eecchhhHHHHhc---CCCeEEecchHHHHHHHH---Hh---hcccceEEEecCCcHHHHHHHHHhhc------------
Confidence              00111111111   123466776543332222   11   12345677778888999999999874            


Q ss_pred             CCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          178 FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       178 ~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                           .++.+.+.+|+..+.....   ..+...-.++.+|  .++++.+++|.++|.
T Consensus       137 ---------------------~~~~~~I~~Rl~~~~~e~~---~~~~~~fd~vI~N--~dle~a~~~l~~iI~  183 (186)
T d1gkya_         137 ---------------------TETEESINKRLSAAQAELA---YAETGAHDKVIVN--DDLDKAYKELKDFIF  183 (186)
T ss_dssp             ---------------------CSCHHHHHHHHHHHHHHHH---HHTTTCSSEEEEC--SSHHHHHHHHHHHHH
T ss_pred             ---------------------cchhHHHHHHHHHHHHHHH---hhhhcCCCEEEEC--cCHHHHHHHHHHHHH
Confidence                                 4567888899877654322   1111111233344  479999999999884

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=1.2e-08  Score=77.85  Aligned_cols=68  Identities=18%  Similarity=0.149  Sum_probs=45.3

Q ss_pred             CCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHH
Q 025529          142 KKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID  221 (251)
Q Consensus       142 ~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~  221 (251)
                      ..+..++++..|.+++.+|+..|.                                 .++.+.+++|+..+.....    
T Consensus       114 ~~~~~i~i~~~s~e~L~~RL~~Rg---------------------------------~~~~e~I~~Rl~~~~~e~~----  156 (182)
T d1znwa1         114 PEAVTVFLAPPSWQDLQARLIGRG---------------------------------TETADVIQRRLDTARIELA----  156 (182)
T ss_dssp             TTSEEEEEECSCHHHHHHHHHTTS---------------------------------CSCHHHHHHHHHHHHHHHH----
T ss_pred             cceeEEeeecccHHHHHHHhhhcC---------------------------------cchHHHHHHHHHHHHHHHh----
Confidence            345455556678899999999884                                 4567889999987654321    


Q ss_pred             HHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529          222 YYSKKGIVAQLHAEKPPQEVTSEVQKAL  249 (251)
Q Consensus       222 ~~~~~~~~~~id~~~~~eev~~~i~~~l  249 (251)
                      +...- ..+.+|  .++++.++++.++|
T Consensus       157 ~~~~f-D~vI~N--ddle~a~~~l~~iI  181 (182)
T d1znwa1         157 AQGDF-DKVVVN--RRLESACAELVSLL  181 (182)
T ss_dssp             GGGGS-SEEEEC--SSHHHHHHHHHHHH
T ss_pred             hHhcC-CEEEEC--cCHHHHHHHHHHHh
Confidence            12111 233333  48999999998876

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.86  E-value=3.8e-09  Score=79.70  Aligned_cols=30  Identities=17%  Similarity=0.162  Sum_probs=25.6

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      +.+++.|.|.     |+|||||||+|+.|+++++.
T Consensus         3 ~~~g~~I~l~-----G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           3 ATQGFTIFLT-----GYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             TTCCEEEEEE-----CSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEE-----CCCCCCHHHHHHHHHHHHhh
Confidence            3467777788     99999999999999999953

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=1.7e-09  Score=84.14  Aligned_cols=117  Identities=11%  Similarity=0.075  Sum_probs=66.6

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCC-----ceechhHHHHHHHHcCCchH-------HHHHHHHHcCCCcCHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL-----CHLATGDMLRAAVAAKTPLG-------IKAKEAMDKGELVSDD   99 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~-----~~i~~~~li~~~~~~~~~~~-------~~i~~~l~~~~~~~~~   99 (251)
                      |..|++.     |.|||||||+|+.|+++++.     ..++.|. ++..........       ......       ...
T Consensus         2 p~li~l~-----GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~-~r~~~~~~~~~~~~~~~~~~~~~~~-------~~~   68 (213)
T d1bifa1           2 PTLIVMV-----GLPARGKTYISKKLTRYLNFIGVPTREFNVGQ-YRRDMVKTYKSFEFFLPDNEEGLKI-------RKQ   68 (213)
T ss_dssp             CEEEEEE-----CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHHHHHCSCCCGGGGCTTCHHHHHH-------HHH
T ss_pred             CEEEEEE-----CCCCCCHHHHHHHHHHHHHhcCCCCeEEcccc-eehhhccccccccccccccccchhh-------HHH
Confidence            4567777     99999999999999998853     3455654 555444321110       000000       011


Q ss_pred             HHHHHHHHHHcCC--CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529          100 LVVGIIDEAMKKP--SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT  162 (251)
Q Consensus       100 ~~~~ll~~~l~~~--~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~  162 (251)
                      .....+...+...  .....+|+|.......+...+.++....+. +.+++...|+++.+.++..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  132 (213)
T d1bifa1          69 CALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGY-KTFFVESICVDPEVIAANI  132 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTC-EEEEEEECCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEeecCCccHHHHHHHHHHHHhcCC-eEEEEEeeccHHHHHHHhH
Confidence            1222222222111  122346789877777777777766655544 3467778888887766543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.82  E-value=1e-08  Score=77.54  Aligned_cols=33  Identities=15%  Similarity=0.139  Sum_probs=30.0

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      +++|+|+     |||||||||+|+.|+++||.+++..+
T Consensus         7 ~K~I~i~-----G~~GsGKTTla~~La~~~~~~~i~~~   39 (192)
T d1lw7a2           7 AKTVAIL-----GGESSGKSVLVNKLAAVFNTTSAWEY   39 (192)
T ss_dssp             CEEEEEE-----CCTTSHHHHHHHHHHHHTTCEEECCT
T ss_pred             ceEEEEE-----CCCCCCHHHHHHHHHHHhCCCeEeee
Confidence            5679999     99999999999999999999988764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=5.7e-09  Score=80.45  Aligned_cols=71  Identities=21%  Similarity=0.169  Sum_probs=46.4

Q ss_pred             CCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHH
Q 025529          141 GKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVI  220 (251)
Q Consensus       141 ~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~  220 (251)
                      ...+..++++..+.+++.+|+..|.                                 .++.+.+.+|+..+.....   
T Consensus       110 ~~~~~~I~i~~~~~e~l~~RL~~R~---------------------------------~~~~e~i~~rl~~~~~~~~---  153 (190)
T d1lvga_         110 DLCPIYIFVQPPSLDVLEQRLRLRN---------------------------------TETEESLAKRLAAARTDME---  153 (190)
T ss_dssp             SCCCEEEEEECSCHHHHHHHHHHHT---------------------------------CSCHHHHHHHHHHHHHHTT---
T ss_pred             cccceEEEEecchHHHHHHHHhhcc---------------------------------ccchHHHHHHHHHHHHHHH---
Confidence            3455566666667789999998773                                 5677899999987665432   


Q ss_pred             HHHhhCC--cEEEEcCCCChhHHHHHHHHHhc
Q 025529          221 DYYSKKG--IVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       221 ~~~~~~~--~~~~id~~~~~eev~~~i~~~l~  250 (251)
                       +....+  .++.+|  .+.++.+++|.++|.
T Consensus       154 -~~~~~~~fd~iI~N--~dle~a~~~l~~iI~  182 (190)
T d1lvga_         154 -SSKEPGLFDLVIIN--DDLDKAYATLKQALS  182 (190)
T ss_dssp             -GGGSTTTCSEEEEC--SSHHHHHHHHHHHTH
T ss_pred             -hhhhcCCCCEEEEC--cCHHHHHHHHHHHHH
Confidence             111111  234444  378888888887764

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.72  E-value=1.2e-08  Score=78.20  Aligned_cols=42  Identities=19%  Similarity=0.125  Sum_probs=29.6

Q ss_pred             hHHHHHHHHhhc-cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           16 DLMTELLRRMKC-ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        16 ~~~~~~~~~~~~-~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      +....+...... .+..|..|.|.     |++||||||+|+.|++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~iIgI~-----G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_           5 DRIDFLCKTILAIKTAGRLVLGID-----GLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             HHHHHHHHHHHTSCCSSSEEEEEE-----ECTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCEEEEEE-----CCCCCCHHHHHHHHHHHhc
Confidence            344445555533 34455555566     9999999999999999885

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.67  E-value=2.6e-08  Score=80.25  Aligned_cols=122  Identities=18%  Similarity=0.182  Sum_probs=67.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC--CceechhHHHHHHHHcCCchHHHHHHHHHcC----CCcCHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKG----ELVSDDLVVG  103 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~----~~~~~~~~~~  103 (251)
                      ..|..|++.     |||||||||+|+.|++.++  +..++++++....    ..............    ......+...
T Consensus        30 ~~P~~ilL~-----GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (273)
T d1gvnb_          30 ESPTAFLLG-----GQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH----PNFDELVKLYEKDVVKHVTPYSNRMTEA  100 (273)
T ss_dssp             SSCEEEEEE-----CCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTS----TTHHHHHHHHGGGCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEE-----CCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHh----ccCcccchhhhHHHHHHHHhhccchHHH
Confidence            356678888     9999999999999999985  5566776653211    01011111000000    0000111122


Q ss_pred             HHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529          104 IIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR  164 (251)
Q Consensus       104 ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r  164 (251)
                      .+...+.   .....+++...........+...+...+.. ..+.++.++.+....|...|
T Consensus       101 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~R  157 (273)
T d1gvnb_         101 IISRLSD---QGYNLVIEGTGRTTDVPIQTATMLQAKGYE-TKMYVMAVPKINSYLGTIER  157 (273)
T ss_dssp             HHHHHHH---HTCCEEECCCCCCSHHHHHHHHHHHTTTCE-EEEEEECCCHHHHHHHHHHH
T ss_pred             HHHHHHh---hCCCCcccccccchHHHHHHHHHHHHcCCe-EEEEecCCCchhhhhHHhcC
Confidence            2222221   234567777666665555555444444443 35667889999888887765

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=5.9e-08  Score=75.53  Aligned_cols=162  Identities=14%  Similarity=0.185  Sum_probs=87.0

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCC--ceechhHHHHHHHHcC----Cc----hHHHHHHHHHcCCCcCHHHH-
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRAAVAAK----TP----LGIKAKEAMDKGELVSDDLV-  101 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~--~~i~~~~li~~~~~~~----~~----~~~~i~~~l~~~~~~~~~~~-  101 (251)
                      +.|+|.     ||+||||||+.+.|.+.+..  ..+++....|. ..++    ..    --..+.+.+.+|..+....+ 
T Consensus         3 ~livi~-----GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~-~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~   76 (205)
T d1s96a_           3 TLYIVS-----APSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ-PRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF   76 (205)
T ss_dssp             CEEEEE-----CCTTSCHHHHHHHHHHHSCTTTEEECCCEECSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred             eEEEEE-----CCCCCCHHHHHHHHHhhCCccCceEEEEEeccC-CCccccccccceeecHHHHHHHhhhhhheeEEEEC
Confidence            456666     99999999999999998742  12222111111 0000    00    11355555555554332111 


Q ss_pred             -------HHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCcee
Q 025529          102 -------VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTY  174 (251)
Q Consensus       102 -------~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~  174 (251)
                             ..-+...+   ..++.+|+|.-+.   ....+.+.    ...+..++++..+.+++.+|+..|.         
T Consensus        77 g~~YGt~~~~v~~~~---~~g~~~ildid~~---g~~~lk~~----~~~~~~ifi~pps~~~l~~RL~~Rg---------  137 (205)
T d1s96a_          77 GNYYGTSREAIEQVL---ATGVDVFLDIDWQ---GAQQIRQK----MPHARSIFILPPSKIELDRRLRGRG---------  137 (205)
T ss_dssp             TEEEEEEHHHHHHHH---TTTCEEEEECCHH---HHHHHHHH----CTTCEEEEEECSSHHHHHHHHHTTS---------
T ss_pred             CceeccccchHHHHH---hcCCceeecCcHH---HHHHHHhh----hcccceeeeeccchHHHHHHHHhcC---------
Confidence                   11122222   2234577775533   23333222    2334455566677788999999874         


Q ss_pred             cccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          175 HTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       175 ~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                                              .++.+.++.|+.........    +... .++.+|  .+++..+++|.++|.
T Consensus       138 ------------------------~~~~~~i~~Rl~~a~~E~~~----~~~f-D~vIvN--ddl~~a~~el~~iI~  182 (205)
T d1s96a_         138 ------------------------QDSEEVIAKRMAQAVAEMSH----YAEY-DYLIVN--DDFDTALTDLKTIIR  182 (205)
T ss_dssp             ------------------------CSCHHHHHHHHHHHHHHHTT----GGGS-SEEEEC--SSHHHHHHHHHHHHH
T ss_pred             ------------------------CchHHHHHHHHHHHHHHHHH----HhCC-CEEEEC--cCHHHHHHHHHHHHH
Confidence                                    45567788888765554321    1111 244454  478999999988873

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=98.62  E-value=9.1e-08  Score=79.70  Aligned_cols=27  Identities=26%  Similarity=0.297  Sum_probs=23.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      ...+|+|.     |+.||||||+++.|++.++
T Consensus         5 ~~~rI~iE-----G~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           5 TIVRIYLD-----GVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEEE-----CSTTSSHHHHHHHHHSGGG
T ss_pred             ceEEEEEE-----CCccCCHHHHHHHHHHHhc
Confidence            35678888     9999999999999999884

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=98.61  E-value=3.8e-07  Score=75.79  Aligned_cols=24  Identities=8%  Similarity=0.019  Sum_probs=20.0

Q ss_pred             CCcCEEEEEecCHHHHHHHHhcCc
Q 025529          142 KKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       142 ~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ..||.+|||++|++++++|+++|.
T Consensus       158 ~~pdliIyLd~~pe~~l~RIk~Rg  181 (331)
T d1osna_         158 PPGTNLVVCTVSLPSHLSRVSKRA  181 (331)
T ss_dssp             CSCCEEEEEECCHHHHHHHCC---
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHcC
Confidence            578999999999999999999984

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=98.57  E-value=9.8e-08  Score=79.22  Aligned_cols=24  Identities=13%  Similarity=0.051  Sum_probs=22.1

Q ss_pred             CCcCEEEEEecCHHHHHHHHhcCc
Q 025529          142 KKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       142 ~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ..||.+|||++|++++++|+.+|.
T Consensus       153 ~~pdliIyLd~~pe~~l~RI~~Rg  176 (329)
T d1e2ka_         153 LPGTNIVLGALPEDRHIDRLAKRQ  176 (329)
T ss_dssp             CTTCEEEEEECCHHHHHHHHHHSC
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHcC
Confidence            468999999999999999999984

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.43  E-value=5.3e-08  Score=77.38  Aligned_cols=37  Identities=24%  Similarity=0.446  Sum_probs=31.2

Q ss_pred             eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA   75 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~   75 (251)
                      ||+|+|++||||||+|+.|++++|+++++.++.+...
T Consensus         3 iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~   39 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDA   39 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHH
Confidence            5778899999999999999999999999965544443

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=1.3e-07  Score=52.16  Aligned_cols=38  Identities=66%  Similarity=1.080  Sum_probs=34.9

Q ss_pred             cCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCC
Q 025529          163 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDD  200 (251)
Q Consensus       163 ~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~  200 (251)
                      .|+.++.+|+.||..|+||..+++++.|++.|++|.+|
T Consensus         1 GRr~C~~cG~~Yh~~~~ppk~~g~CD~cg~~L~qR~DD   38 (38)
T d1akya2           1 GRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDD   38 (38)
T ss_dssp             TEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCTTC
T ss_pred             CccCCcCccchhhhhccCcCcCCccCCCCCEeeecCCC
Confidence            36778999999999999999999999999999999875

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.25  E-value=1.6e-07  Score=51.36  Aligned_cols=36  Identities=67%  Similarity=1.334  Sum_probs=33.2

Q ss_pred             CcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCC
Q 025529          164 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD  199 (251)
Q Consensus       164 r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~  199 (251)
                      |++|+.+|+.||..|+||..+++++.|++.|++|.+
T Consensus         2 R~vc~~cG~~Yh~~~~pPk~~g~CD~cg~~L~qR~D   37 (37)
T d2ak3a2           2 RWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQRED   37 (37)
T ss_dssp             EEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGG
T ss_pred             ceeeCCcCChhhhccCCccccCCccCCCCcCEecCC
Confidence            678899999999999999999999999999998853

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=2.5e-07  Score=76.16  Aligned_cols=38  Identities=16%  Similarity=0.252  Sum_probs=28.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-------CceechhHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-------LCHLATGDML   72 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-------~~~i~~~~li   72 (251)
                      +.|..|.|-     |++||||||+|+.|++.+.       +.++++|++.
T Consensus        78 k~P~iIGIa-----G~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          78 RIPYIISIA-----GSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             CCCEEEEEE-----ECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCEEEEEe-----CCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            345444455     9999999999999999873       3567888764

>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.09  E-value=1e-06  Score=45.51  Aligned_cols=30  Identities=67%  Similarity=1.224  Sum_probs=27.6

Q ss_pred             CCCCceecccCCCCCCCCCCCCCCCCcccC
Q 025529          168 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQR  197 (251)
Q Consensus       168 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r  197 (251)
                      +.+|+.||..|+||..+++||.|++.|.+|
T Consensus         1 P~sG~~Yhv~f~PPk~~g~cD~cg~~L~qR   30 (30)
T d1ak2a2           1 PQSGRSYHEEFNPPKEPMKDDITGEPLIRR   30 (30)
T ss_dssp             TTTCCEEBTTTBCCSSTTBCTTTCCBCEEC
T ss_pred             CCCCCCccccccCCCCCCccCCCCCCcccC
Confidence            358999999999999999999999999876

>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=9e-07  Score=47.78  Aligned_cols=34  Identities=65%  Similarity=1.071  Sum_probs=31.6

Q ss_pred             CcCCCCCCceecccCCCCCCCCCCCCCCCCcccC
Q 025529          164 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR  197 (251)
Q Consensus       164 r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r  197 (251)
                      |+.|+.+|+.||..|.||..++++|.|++.|++|
T Consensus         2 Rr~c~~cG~~Yh~~~~PPk~~g~CD~cg~~L~qR   35 (35)
T d1e4va2           2 RRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTR   35 (35)
T ss_dssp             EEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred             ccCCcCcCChhhhccCccccCCcccCCCCEeecC
Confidence            6778999999999999999999999999998876

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.99  E-value=1.4e-06  Score=70.63  Aligned_cols=37  Identities=11%  Similarity=0.238  Sum_probs=25.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh---CC--ceechhHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CL--CHLATGDML   72 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~--~~i~~~~li   72 (251)
                      +++.|.+.     |++||||||+++.|++.+   ++  .+++.|++.
T Consensus         3 k~pIIgIa-----G~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           3 KHPIISVT-----GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             TSCEEEEE-----SCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CCCEEEEE-----CCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            44455555     999999999999998877   34  377888763

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=1.3e-06  Score=64.81  Aligned_cols=22  Identities=23%  Similarity=0.175  Sum_probs=19.1

Q ss_pred             ecccCCCCCChhHHHHHHHHHh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++|+|++||||||+++.|++++
T Consensus         5 i~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Confidence            4455999999999999999876

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=97.98  E-value=0.00056  Score=46.07  Aligned_cols=99  Identities=21%  Similarity=0.256  Sum_probs=64.0

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS  113 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~  113 (251)
                      .|++.     ||.++-|||++..|++.+.++.+-.+.+--         .+       .|    ++-+.+..    +.+.
T Consensus         2 liile-----gpdccfkstvaaklskelkypiikgssfel---------ak-------sg----neklfehf----nkla   52 (164)
T d2axpa1           2 LIILE-----GPDCCFKSTVAAKLSKELKYPIIKGSSFEL---------AK-------SG----NEKLFEHF----NKLA   52 (164)
T ss_dssp             EEEEE-----CCSSSCHHHHHHHHHHHHTCCEEECCCHHH---------HH-------HC----HHHHHHHH----HHHT
T ss_pred             eEEEe-----CCchhhHHHHHHHHHhhhcCceecCchhhh---------hh-------cc----CHHHHHHH----Hhhc
Confidence            46677     999999999999999999999886643210         00       11    12222222    1222


Q ss_pred             CCCceEEeCCC---------------CCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529          114 CQKGFILDGFP---------------RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW  165 (251)
Q Consensus       114 ~~~~~Iidg~~---------------~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~  165 (251)
                      ....+|+|.|.               .+..|.+.++..+.    ....++||.+++..+.+|+.-|.
T Consensus        53 dednviidrfvysnlvyakkfkdysilterqlrfiedkik----akakvvylhadpsvikkrlrvrg  115 (164)
T d2axpa1          53 DEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIK----AKAKVVYLHADPSVIKKRLRVRG  115 (164)
T ss_dssp             TCCSEEEESCHHHHHHHTTTBSSCCCCCHHHHHHHHHHHT----TTEEEEEEECCHHHHHHHHHHHT
T ss_pred             cccceeeehhhhhhhHHHhhcccceehhHHHHHHHHHHhh----hheeEEEEecChHHHHHHhcccc
Confidence            33467888762               23455555554432    22468999999999999999875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.98  E-value=3.6e-06  Score=66.23  Aligned_cols=47  Identities=26%  Similarity=0.344  Sum_probs=34.4

Q ss_pred             hHHHHHHHHhh---ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec
Q 025529           16 DLMTELLRRMK---CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA   67 (251)
Q Consensus        16 ~~~~~~~~~~~---~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~   67 (251)
                      ++.+.+-.+..   ......+.++|.     ||||+||||+|+.|+++++..++.
T Consensus        16 ~~~~~l~~~i~~~~~~~~~~~~~L~~-----GPpGtGKT~lA~~la~~~~~~~~~   65 (238)
T d1in4a2          16 NVKKKLSLALEAAKMRGEVLDHVLLA-----GPPGLGKTTLAHIIASELQTNIHV   65 (238)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCEEEE-----SSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCCCeEEEE-----CCCCCcHHHHHHHHHhccCCCccc
Confidence            44554444442   223445678899     999999999999999999887654

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.94  E-value=1.8e-06  Score=46.55  Aligned_cols=34  Identities=50%  Similarity=0.755  Sum_probs=31.3

Q ss_pred             CcCCCCCCceecccCCCCCCCCCCCCCCCCcccC
Q 025529          164 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR  197 (251)
Q Consensus       164 r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r  197 (251)
                      |+.++.+|+.||..|.||..++++|.|++.|++|
T Consensus         2 Rr~C~~CG~~Yh~~~~pPk~~g~CD~cG~~L~qR   35 (35)
T d1zina2           2 RRICRNCGATYHLIFHPPAKPGVCDKCGGELYQR   35 (35)
T ss_dssp             EEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred             ccCCcCcCchhccccCCCCCCCcCCCCCCCcccC
Confidence            5678899999999999999999999999998876

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.94  E-value=4.5e-06  Score=65.69  Aligned_cols=49  Identities=33%  Similarity=0.464  Sum_probs=36.2

Q ss_pred             hhHHHHHHHHhhcc---CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           15 VDLMTELLRRMKCA---SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        15 ~~~~~~~~~~~~~~---~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      +++.+++...+...   ...++.++|.     ||||+||||+|+.+++.+++++...
T Consensus        15 ~~~~~~L~~~i~~~~~~~~~~~~~Ll~-----GPpG~GKTtla~~la~~~~~~~~~~   66 (239)
T d1ixsb2          15 ERLKQKLRVYLEAAKARKEPLEHLLLF-----GPPGLGKTTLAHVIAHELGVNLRVT   66 (239)
T ss_dssp             HHHHHHHHHHHHHHTTSSSCCCCEEEE-----CCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCeEEEE-----CCCCCCHHHHHHHHHHHhCCCeEec
Confidence            45566655555432   2345678899     9999999999999999998876554

>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus globisporus [TaxId: 1459]

Probab=97.88  E-value=2.3e-06  Score=46.12  Aligned_cols=34  Identities=44%  Similarity=0.683  Sum_probs=31.3

Q ss_pred             CcCCCCCCceecccCCCCCCCCCCCCCCCCcccC
Q 025529          164 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR  197 (251)
Q Consensus       164 r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r  197 (251)
                      |+.++.+|+.||..|.||..++++|.|++.|++|
T Consensus         2 R~~C~~CG~~Yh~~~~pPk~~g~CD~cg~~L~qR   35 (35)
T d1s3ga2           2 RRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQR   35 (35)
T ss_dssp             EEEETTTCCEEETTTBCCSBTTBCTTTCCBEECC
T ss_pred             ccCCcCcCchhccccCCCCCCCccCCCCCCceeC
Confidence            5678899999999999999999999999998875

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=7.8e-06  Score=65.34  Aligned_cols=33  Identities=27%  Similarity=0.483  Sum_probs=29.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .+..+++.     ||||+|||++++.+|+.++.+++.+
T Consensus        44 ~~~~iLL~-----GppGtGKT~la~~iA~~~~~~~~~i   76 (256)
T d1lv7a_          44 IPKGVLMV-----GPPGTGKTLLAKAIAGEAKVPFFTI   76 (256)
T ss_dssp             CCCEEEEE-----CCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCeEEee-----CCCCCCccHHHHHHHHHcCCCEEEE
Confidence            45668999     9999999999999999999887654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.77  E-value=7.9e-06  Score=64.93  Aligned_cols=34  Identities=29%  Similarity=0.413  Sum_probs=29.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ++.-+++.     ||||+|||++|+.||+.++++++.++
T Consensus        39 p~~~vLL~-----GppGtGKT~la~alA~~~~~~~~~i~   72 (246)
T d1d2na_          39 PLVSVLLE-----GPPHSGKTALAAKIAEESNFPFIKIC   72 (246)
T ss_dssp             SEEEEEEE-----CSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCeEEEEE-----CcCCCCHHHHHHHHhhcccccccccc
Confidence            44558888     99999999999999999999887653

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.76  E-value=7.6e-06  Score=61.03  Aligned_cols=26  Identities=31%  Similarity=0.473  Sum_probs=23.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      |+|+|.     ||+||||||+++.++..++.
T Consensus         1 ~ki~I~-----G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           1 MKIIIT-----GEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEE-----CCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEE-----CCCCcHHHHHHHHHHhcCCC
Confidence            578888     99999999999999998854

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=5.4e-06  Score=61.82  Aligned_cols=20  Identities=40%  Similarity=0.612  Sum_probs=18.2

Q ss_pred             ccCCCCCChhHHHHHHHHHh
Q 025529           42 LAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~~   61 (251)
                      |+|||||||||+++.+++.+
T Consensus         6 ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           6 LTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             EESCCSSCHHHHHHHHHHHH
T ss_pred             EECCCCCcHHHHHHHHHHHH
Confidence            34999999999999999887

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.74  E-value=9.7e-06  Score=64.44  Aligned_cols=35  Identities=26%  Similarity=0.495  Sum_probs=30.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ..+.-+++.     ||||+|||++++.|++.++.+++.++
T Consensus        40 ~~~~giLl~-----GppGtGKT~la~aia~~~~~~~~~i~   74 (247)
T d1ixza_          40 RIPKGVLLV-----GPPGVGKTHLARAVAGEARVPFITAS   74 (247)
T ss_dssp             CCCSEEEEE-----CCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCceEEEe-----cCCCCChhHHHHHHHHHcCCCEEEEE
Confidence            345568999     99999999999999999998886653

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.71  E-value=9.9e-06  Score=66.52  Aligned_cols=33  Identities=21%  Similarity=0.343  Sum_probs=28.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ++..++|.     ||||+|||.+|+.||+.++.+++..
T Consensus        48 ~~~~iLl~-----GPpG~GKT~lAkalA~~~~~~~~~i   80 (309)
T d1ofha_          48 TPKNILMI-----GPTGVGKTEIARRLAKLANAPFIKV   80 (309)
T ss_dssp             CCCCEEEE-----CCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCceEEEE-----CCCCCCHHHHHHHHhhccccchhcc
Confidence            55678999     9999999999999999998765544

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.69  E-value=2.7e-05  Score=61.39  Aligned_cols=32  Identities=31%  Similarity=0.466  Sum_probs=27.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA   67 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~   67 (251)
                      +.+.++|.     ||||+||||+++.|++.++..++.
T Consensus        51 ~~~~lll~-----GPpG~GKTt~a~~la~~~~~~~~~   82 (253)
T d1sxja2          51 VFRAAMLY-----GPPGIGKTTAAHLVAQELGYDILE   82 (253)
T ss_dssp             SCSEEEEE-----CSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEE-----CCCCCCHHHHHHHHHHHHHhhhhc
Confidence            45578888     999999999999999999876553

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=2.5e-05  Score=63.18  Aligned_cols=39  Identities=26%  Similarity=0.317  Sum_probs=27.6

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh--------CCceechhHH
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY--------CLCHLATGDM   71 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~--------~~~~i~~~~l   71 (251)
                      .+++|..|-|-     |++||||||+|..|.+.+        .+.+++.|++
T Consensus        23 ~~~~P~iIGi~-----G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          23 GNKCPLFIFFS-----GPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             TCCSCEEEEEE-----CCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCCCEEEEeE-----CCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            34445444455     999999999998876554        3456788876

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.62  E-value=2.6e-05  Score=67.05  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=30.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      .|.+|+++     ||+|||||.+|+.||+.+++|++-+|
T Consensus        48 ~ksNILli-----GPTGvGKTlLAr~LAk~l~VPFv~~d   81 (443)
T d1g41a_          48 TPKNILMI-----GPTGVGKTEIARRLAKLANAPFIKVE   81 (443)
T ss_dssp             CCCCEEEE-----CCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             ccccEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEee
Confidence            46789999     99999999999999999999988663

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.61  E-value=3.5e-05  Score=64.52  Aligned_cols=36  Identities=19%  Similarity=0.169  Sum_probs=31.4

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ..+++..++|.     ||||+|||++|+.|++.+|.+++++
T Consensus       150 ~~~~~~~~~~~-----g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         150 NIPKKRYWLFK-----GPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             CCTTCCEEEEE-----CSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             CCCCcCeEEEE-----CCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            34456689999     9999999999999999999988865

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.61  E-value=1.2e-05  Score=59.55  Aligned_cols=23  Identities=22%  Similarity=0.046  Sum_probs=19.6

Q ss_pred             eecccCCCCCChhHHHHHHHHHh
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ||+|+|.+||||||++..|.++|
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            34555999999999999998877

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=2.6e-05  Score=62.26  Aligned_cols=34  Identities=26%  Similarity=0.544  Sum_probs=29.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ++..+++.     ||||+|||++++.++..++.+++.++
T Consensus        37 ~~~giLL~-----GppGtGKT~l~~ala~~~~~~~~~i~   70 (258)
T d1e32a2          37 PPRGILLY-----GPPGTGKTLIARAVANETGAFFFLIN   70 (258)
T ss_dssp             CCCEEEEE-----CCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCceeEEe-----cCCCCCchHHHHHHHHHhCCeEEEEE
Confidence            45568999     99999999999999999998877654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.54  E-value=3.1e-05  Score=60.36  Aligned_cols=41  Identities=27%  Similarity=0.453  Sum_probs=29.4

Q ss_pred             hhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           15 VDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .++...+-.+....  +.+.++|.     ||||+||||+++.+++.++
T Consensus        30 ~~~~~~l~~~i~~~--~~~~lll~-----Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          30 EHIVKRLKHYVKTG--SMPHLLFA-----GPPGVGKTTAALALARELF   70 (231)
T ss_dssp             HHHHHHHHHHHHHT--CCCEEEEE-----SCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC--CCCeEEEE-----CCCCCcHHHHHHHHHHHHH
Confidence            34555554544422  34457888     9999999999999999874

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=3e-05  Score=62.16  Aligned_cols=34  Identities=29%  Similarity=0.548  Sum_probs=29.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      .+.-|++.     ||||+|||++++.+|..+|.+++.++
T Consensus        40 ~~~giLL~-----Gp~GtGKT~l~~ala~~~~~~~~~~~   73 (265)
T d1r7ra3          40 PSKGVLFY-----GPPGCGKTLLAKAIANECQANFISIK   73 (265)
T ss_dssp             CCCEEEEB-----CCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCeEEEE-----CCCCCcchhHHHHHHHHhCCcEEEEE
Confidence            45568888     99999999999999999998877664

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.41  E-value=9.6e-05  Score=58.27  Aligned_cols=28  Identities=29%  Similarity=0.418  Sum_probs=24.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      ..+..++|.     ||||+||||+++.|++.+.
T Consensus        41 ~~~~~lll~-----GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLL-----GRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEE-----CCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEE-----CCCCCCHHHHHHHHHHHHh
Confidence            356678899     9999999999999999873

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=7e-05  Score=58.06  Aligned_cols=41  Identities=24%  Similarity=0.284  Sum_probs=29.6

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      ++.+.+-.+....  ..+.++|.     ||||+||||+|+.|++.++.
T Consensus        22 ~~~~~L~~~~~~~--~~~~~ll~-----Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          22 ETIDRLQQIAKDG--NMPHMIIS-----GMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             HHHHHHHHHHHSC--CCCCEEEE-----CSTTSSHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHcC--CCCeEEEE-----CCCCCCchhhHHHHHHHHhc
Confidence            4455555554432  33357888     99999999999999998754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.31  E-value=9.7e-05  Score=58.61  Aligned_cols=22  Identities=23%  Similarity=0.143  Sum_probs=19.3

Q ss_pred             ecccCCCCCChhHHHHHHHHHh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++|+||||+||||+++.+++.+
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHH
Confidence            3456999999999999999986

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=0.00011  Score=57.16  Aligned_cols=39  Identities=26%  Similarity=0.477  Sum_probs=28.3

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++...+..++..  ...+.++|.     ||||+||||+++.+++++
T Consensus        19 ~~~~~l~~~i~~--~~~~~lll~-----Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          19 HAVTVLKKTLKS--ANLPHMLFY-----GPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             TTHHHHHHHTTC--TTCCCEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCCCeEEEE-----CCCCCChHHHHHHHHHHH
Confidence            345555555542  233457888     999999999999999985

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=0.00012  Score=57.44  Aligned_cols=40  Identities=25%  Similarity=0.427  Sum_probs=28.9

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++++.+ ..+...+...+.++|.     ||||+||||+++.+++.+
T Consensus        18 ~~~~~L-~~~~~~~~~~~~lll~-----Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          18 ELTNFL-KSLSDQPRDLPHLLLY-----GPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             HHHHHH-HTTTTCTTCCCCEEEE-----CSTTSSHHHHHHTHHHHH
T ss_pred             HHHHHH-HHHHHcCCCCCeEEEE-----CCCCCCHHHHHHHHHHhh
Confidence            344433 3333344455568899     999999999999999987

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.00014  Score=56.20  Aligned_cols=40  Identities=23%  Similarity=0.419  Sum_probs=28.9

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      ++...+-.++..  ...+.++|.     ||||+||||+++.|++.++
T Consensus        21 ~~~~~L~~~i~~--~~~~~lLl~-----Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          21 EVITTVRKFVDE--GKLPHLLFY-----GPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             HHHHHHHHHHHT--TCCCCEEEE-----CSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCCCeEEEE-----CCCCCChhHHHHHHHHHhh
Confidence            455555555443  233357888     9999999999999999864

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.21  E-value=6.9e-05  Score=58.38  Aligned_cols=22  Identities=32%  Similarity=0.341  Sum_probs=18.6

Q ss_pred             ecccCCCCCChhHHHHHHHHHh
Q 025529           40 VWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        40 i~i~G~~gsGKST~a~~La~~~   61 (251)
                      |+|+|++||||||+.+.|.+.+
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Confidence            4455999999999999998765

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00015  Score=59.62  Aligned_cols=43  Identities=28%  Similarity=0.249  Sum_probs=34.1

Q ss_pred             chhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           14 SVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..++.++++........+..+|-|.     |+|||||||+...|...+
T Consensus        36 ~~~~~~~ll~~~~~~~~~~~~Igit-----G~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          36 HQALSTQLLDAIMPYCGNTLRLGVT-----GTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             HHHHHHHHHHHHGGGCSCSEEEEEE-----ECTTSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhhhccCCceEEEee-----CCCCCCHHHHHHHHHHHH
Confidence            4455666777666555678888888     999999999999998776

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.18  E-value=0.00024  Score=51.94  Aligned_cols=47  Identities=17%  Similarity=0.103  Sum_probs=34.3

Q ss_pred             CchhHHHHHHHHhhc-----cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           13 PSVDLMTELLRRMKC-----ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        13 ~~~~~~~~~~~~~~~-----~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      ++++...++...+..     ...++..+.+.     |.-||||||+++.+++.+|+.
T Consensus         9 ~~e~~t~~lg~~la~~l~~~~~~~g~ii~L~-----G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_           9 PDEFSMLRFGKKFAEILLKLHTEKAIMVYLN-----GDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHCCSSCEEEEEE-----CSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHhccCCCCeEEEEe-----cCCCccHHHHHHHHHhhcccc
Confidence            455555555444432     23466678888     999999999999999999874

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00028  Score=57.67  Aligned_cols=30  Identities=20%  Similarity=0.347  Sum_probs=26.4

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      .++|.     ||+|+|||.+|+.||+.++.+++..
T Consensus        54 ~~lf~-----Gp~GvGKT~lak~la~~l~~~~i~~   83 (315)
T d1r6bx3          54 SFLFA-----GPTGVGKTEVTVQLSKALGIELLRF   83 (315)
T ss_dssp             EEEEE-----CSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             EEEEE-----CCCcchhHHHHHHHHhhccCCeeEe
Confidence            68888     9999999999999999998776644

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=0.00018  Score=55.44  Aligned_cols=29  Identities=21%  Similarity=0.455  Sum_probs=25.1

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+.+|..|+|+     ||+|+||||.+-.||.++
T Consensus         7 ~~~~p~vi~lv-----GptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           7 PPEPPFVIMVV-----GVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CSSSCEEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            35678888999     999999999999999877

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.04  E-value=0.00025  Score=58.17  Aligned_cols=43  Identities=19%  Similarity=0.239  Sum_probs=32.5

Q ss_pred             chhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           14 SVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ......++.........+..+|-|.     |+||+||||+...|.+.+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~igit-----G~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          33 HRAAVRDLIDAVLPQTGRAIRVGIT-----GVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             HHHHHHHHHHHHGGGCCCSEEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhccCCceEEeee-----CCCCCCHHHHHHHHHHHH
Confidence            4445566666655455677777777     999999999999998875

>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.02  E-value=0.00011  Score=37.57  Aligned_cols=24  Identities=33%  Similarity=0.843  Sum_probs=20.4

Q ss_pred             CcCCCCCCceecccCCCCCCCCCC
Q 025529          164 RWIHPSSGRTYHTKFAPPKVPGVD  187 (251)
Q Consensus       164 r~~~~~~~~~~~~~~~~p~~~~~~  187 (251)
                      |+.++.+|+.||+.|.||.++.+.
T Consensus         2 RR~DP~TG~iYH~~f~ppp~~ei~   25 (31)
T d1zaka2           2 RRLDPVTGKIYHLKYSPPENEEIA   25 (31)
T ss_dssp             EEECTTTCCEEESSSSCCCSSGGG
T ss_pred             CcCCCCCCcEeEEecCCCCCHHHH
Confidence            567899999999999999866654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.91  E-value=0.00052  Score=57.19  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=29.6

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT   68 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~   68 (251)
                      ..++.+|+|+     ||+|+|||-+|+.||+.++.+++-.
T Consensus        65 ~~p~~niLfi-----GPTGvGKTElAk~LA~~~~~~~ir~   99 (364)
T d1um8a_          65 ELSKSNILLI-----GPTGSGKTLMAQTLAKHLDIPIAIS   99 (364)
T ss_dssp             TCCCCCEEEE-----CCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCcceeee-----CCCCccHHHHHHHHHhhcccceeeh
Confidence            4567789999     9999999999999999987665543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00039  Score=53.36  Aligned_cols=28  Identities=21%  Similarity=0.400  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..+|..|+++     ||+|+||||.+-.||.++
T Consensus         6 ~~~p~vi~lv-----GptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           6 GKAPFVILMV-----GVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             SCTTEEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            4567788889     999999999999999777

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.84  E-value=0.00038  Score=53.51  Aligned_cols=27  Identities=30%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +.|..|+|+     ||+|+||||.+-.||.++
T Consensus        10 k~p~vi~lv-----GptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          10 KIPYVIMLV-----GVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSEEEEEE-----CSCCC----HHHHHHHHH
T ss_pred             CCCEEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            457778888     999999999999998877

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.76  E-value=0.00053  Score=52.49  Aligned_cols=26  Identities=23%  Similarity=0.428  Sum_probs=22.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..|+++     ||+||||||.+-.||.++
T Consensus         5 ~~~vi~lv-----GptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVV-----GVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            45678888     999999999999998877

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.75  E-value=0.00023  Score=58.28  Aligned_cols=25  Identities=16%  Similarity=0.057  Sum_probs=21.0

Q ss_pred             CCCCCChhHHHHHHHHHhC--Cceech
Q 025529           44 GPPGSGKGTQSPIIKDEYC--LCHLAT   68 (251)
Q Consensus        44 G~~gsGKST~a~~La~~~~--~~~i~~   68 (251)
                      ||||+|||.+++.||...+  ++++++
T Consensus       130 G~pG~GKT~la~ala~~~~~~~~~~~~  156 (321)
T d1w44a_         130 GKGNSGKTPLVHALGEALGGKDKYATV  156 (321)
T ss_dssp             CSSSSCHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCCCccHHHHHHHHHHHhcCCCCeEEE
Confidence            9999999999999999975  555443

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00084  Score=51.27  Aligned_cols=40  Identities=15%  Similarity=0.226  Sum_probs=29.7

Q ss_pred             HHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           17 LMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      ++..+...+. .++.|..++|.     ||+|+||||+++.+++.+.
T Consensus        10 ~~~~l~~~~~-~~~l~h~lLl~-----Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          10 DFEKLVASYQ-AGRGHHALLIQ-----ALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             HHHHHHHHHH-TTCCCSEEEEE-----CCTTSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH-cCCcCeEEEEE-----CCCCCcHHHHHHHHHHhcc
Confidence            3444444444 33446679999     9999999999999999873

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00049  Score=51.35  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=20.8

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .|+|+     ||+||||+|+.+.|.+.+.
T Consensus         5 ~ivl~-----Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           5 TLVLL-----GAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             EEEEE-----CCTTSSHHHHHHHHHHHCT
T ss_pred             cEEEE-----CCCCCCHHHHHHHHHHhCC
Confidence            37777     9999999999999998763

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.69  E-value=0.00066  Score=51.97  Aligned_cols=26  Identities=31%  Similarity=0.410  Sum_probs=22.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+..|++.     ||+|+||||.+..||.++
T Consensus         9 ~~~vi~lv-----Gp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           9 DRNLWFLV-----GLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SSEEEEEE-----CCTTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            45567778     999999999999998877

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.0013  Score=51.15  Aligned_cols=42  Identities=14%  Similarity=0.293  Sum_probs=30.1

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      ++.+.+..++. ....|..++|.     ||||+||||+|+.+++.++.
T Consensus        19 ~~~~~L~~~i~-~~~~~~~~Ll~-----Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          19 HVLTALANGLS-LGRIHHAYLFS-----GTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             HHHHHHHHHHH-TTCCCSEEEEE-----CSTTSSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHH-cCCCCeeEEEE-----CCCCCcHHHHHHHHHHHhcC
Confidence            34444444443 33445668899     99999999999999998843

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.64  E-value=0.003  Score=48.33  Aligned_cols=56  Identities=16%  Similarity=0.158  Sum_probs=35.1

Q ss_pred             chhHHHHHHHHhhccCCCC-eEEEEEeecccCCCCCChhHHHHHHHHHh-----CCceechhHHHHH
Q 025529           14 SVDLMTELLRRMKCASKPD-KRLILIIVWLAGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRA   74 (251)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~-~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~~~li~~   74 (251)
                      ...+...+++.+...+... ..+.|.     ||+|||||.+++.++..+     .+.+++..++...
T Consensus        17 ~N~~a~~~~~~~~~~~~~~~n~l~l~-----G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~   78 (213)
T d1l8qa2          17 GNRLAYEVVKEALENLGSLYNPIFIY-----GSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA   78 (213)
T ss_dssp             TTHHHHHHHHHHHHTTTTSCSSEEEE-----CSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCcCCCCCcEEEE-----CCCCCcHHHHHHHHHHHhccCccceEEechHHHHHH
Confidence            3444444445543333222 227788     999999999999999887     3456666655443

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.63  E-value=0.066  Score=39.94  Aligned_cols=87  Identities=13%  Similarity=0.052  Sum_probs=48.4

Q ss_pred             CCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCc
Q 025529          115 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL  194 (251)
Q Consensus       115 ~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  194 (251)
                      ++.+++|.-+....+...       .... -++||+..|.-+.++|+.+|                              
T Consensus        98 gk~~lldid~~g~~~lk~-------~~~~-~i~IfI~pps~e~l~~l~kr------------------------------  139 (199)
T d1kjwa2          98 GKHCILDVSANAVRRLQA-------AHLH-PIAIFIRPRSLENVLEINKR------------------------------  139 (199)
T ss_dssp             TCEEEECCCTTHHHHHHH-------TTCC-CEEEEECCSSHHHHHHHCTT------------------------------
T ss_pred             CCcccccccchHHhhhhh-------hccc-eeEEeeccccHHHHHhhhcc------------------------------
Confidence            346777765554444331       1233 36788887655555555443                              


Q ss_pred             ccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529          195 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS  250 (251)
Q Consensus       195 ~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~  250 (251)
                           .+.+.+++|+....+.......+|    .++.+  +.+.++.+++|.++|+
T Consensus       140 -----~~~~~i~~r~~~~~~~e~~~~~~f----d~vI~--Nddle~a~~~l~~iI~  184 (199)
T d1kjwa2         140 -----ITEEQARKAFDRATKLEQEFTECF----SAIVE--GDSFEEIYHKVKRVIE  184 (199)
T ss_dssp             -----SCHHHHHHHHHHHHHHHHHHGGGC----SEEEC--CSSHHHHHHHHHHHHH
T ss_pred             -----ccHHHHHHHHHHHHHHHHHhhccC----CEEEE--CcCHHHHHHHHHHHHH
Confidence                 134567777766543333322223    23333  3579999999988875

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.60  E-value=0.00038  Score=54.50  Aligned_cols=27  Identities=37%  Similarity=0.549  Sum_probs=22.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+--+
T Consensus        27 ~~Ge~~~li-----G~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          27 KDGEFMILL-----GPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             ETTCEEEEE-----CSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEE-----CCCCChHHHHHHHHhcCC
Confidence            356677788     999999999999997654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.54  E-value=0.00077  Score=48.36  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=19.9

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ++++++     |+|||||||+.+.|...
T Consensus         1 ikivlv-----G~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           1 MRILMV-----GLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             CEEEEE-----CSTTSSHHHHHHHHHHH
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            478888     99999999999998653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.46  E-value=0.00076  Score=49.60  Aligned_cols=29  Identities=28%  Similarity=0.387  Sum_probs=24.4

Q ss_pred             hccCCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           26 KCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        26 ~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ....++..+|+++     |.+|+||||+...|..
T Consensus         7 ~~~~~k~~kI~lv-----G~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_           7 LGLYKKTGKLVFL-----GLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             HTCTTCCEEEEEE-----EETTSSHHHHHHHHSC
T ss_pred             ccccCCCCEEEEE-----CCCCCCHHHHHHHHhC
Confidence            3445778899999     9999999999998854

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.45  E-value=0.0015  Score=53.26  Aligned_cols=27  Identities=19%  Similarity=0.437  Sum_probs=23.0

Q ss_pred             CCCe-EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDK-RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~-~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+|. .++|.     ||+|+|||.+|+.||+.+
T Consensus        50 ~kp~~~~lf~-----Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          50 NRPIGSFLFL-----GPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SSCSEEEEEB-----SCSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEE-----CCCcchHHHHHHHHHHHh
Confidence            3444 67788     999999999999999987

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.43  E-value=0.00058  Score=53.39  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.1

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++++     ||.||||||+.+.|+--+
T Consensus        26 ~~~li-----GpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLL-----GPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred             EEEEE-----CCCCChHHHHHHHHHcCC
Confidence            56778     999999999999998755

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.37  E-value=0.00053  Score=54.32  Aligned_cols=27  Identities=30%  Similarity=0.327  Sum_probs=22.3

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.|+     |+.||||||+++.|+--+
T Consensus        26 ~~GEi~~ii-----G~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          26 RAGDVISII-----GSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CTTCEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCcHHHHHHHHHcCc
Confidence            466678888     999999999999996533

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0013  Score=51.20  Aligned_cols=27  Identities=26%  Similarity=0.474  Sum_probs=22.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.++--+
T Consensus        24 ~~Gei~~li-----GpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          24 HEGEFVVFV-----GPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CTTCEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEE-----CCCCChHHHHHHHHhcCC
Confidence            566788888     999999999999996644

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.30  E-value=0.0014  Score=48.03  Aligned_cols=30  Identities=27%  Similarity=0.449  Sum_probs=24.6

Q ss_pred             hhccCCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           25 MKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        25 ~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ....+.+..+|+++     |.+|+||||+...|..
T Consensus         9 ~~~~~~~~~kI~vv-----G~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_           9 LKSAPDQEVRILLL-----GLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CSSCCSSCEEEEEE-----ESTTSSHHHHHHHHCC
T ss_pred             hhCCCCCEEEEEEE-----CCCCCCHHHHHHHHhc
Confidence            33456678899999     9999999999988843

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.24  E-value=0.0012  Score=51.69  Aligned_cols=28  Identities=29%  Similarity=0.640  Sum_probs=24.2

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.++|+     ||.||||||+.+.|..-+
T Consensus        25 i~~Ge~vaiv-----G~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          25 AQPNSIIAFA-----GPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             ECTTEEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEE-----CCCCCCHHHHHHHHHHhh
Confidence            3577788999     999999999999997765

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0013  Score=51.56  Aligned_cols=27  Identities=33%  Similarity=0.560  Sum_probs=23.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.++|+     |++||||||+++.|...+
T Consensus        27 ~~Ge~vaIv-----G~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          27 KQGEVIGIV-----GRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             ETTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHHhcC
Confidence            466788888     999999999999998766

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.23  E-value=0.0012  Score=51.27  Aligned_cols=27  Identities=37%  Similarity=0.449  Sum_probs=22.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+--+
T Consensus        29 ~~Ge~~~ii-----G~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          29 KEGEFVSIM-----GPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CTTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCCcchhhHhccCCC
Confidence            466678888     999999999999986644

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.23  E-value=0.0016  Score=48.32  Aligned_cols=34  Identities=15%  Similarity=0.180  Sum_probs=27.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD   70 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~   70 (251)
                      .+.-++|.     |++|+||||++-.|.++ |+.+++-|.
T Consensus        13 ~g~gvl~~-----G~sG~GKStlal~l~~~-g~~lv~DD~   46 (176)
T d1kkma_          13 YGLGVLIT-----GDSGVGKSETALELVQR-GHRLIADDR   46 (176)
T ss_dssp             TTEEEEEE-----CCTTSCHHHHHHHHHHT-TCEEEEEEE
T ss_pred             CCEEEEEE-----eCCCCCHHHHHHHHHHc-CCeEEecCe
Confidence            45567888     99999999999999886 888777653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.22  E-value=0.0014  Score=51.21  Aligned_cols=30  Identities=20%  Similarity=0.150  Sum_probs=24.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCce
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH   65 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~   65 (251)
                      .+..+++.     ||+|+|||++++.+++..+..+
T Consensus        28 ~~~~i~i~-----G~~G~GKTsLl~~~~~~~~~~~   57 (283)
T d2fnaa2          28 RAPITLVL-----GLRRTGKSSIIKIGINELNLPY   57 (283)
T ss_dssp             CSSEEEEE-----ESTTSSHHHHHHHHHHHHTCCE
T ss_pred             cCCEEEEE-----cCCCCcHHHHHHHHHHHCCCCe
Confidence            34567888     9999999999999998886543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.21  E-value=0.0015  Score=47.44  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=20.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +.++|+++     |++||||||+.+.|..
T Consensus         1 k~~ki~iv-----G~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           1 RELRLLML-----GLDNAGKTTILKKFNG   24 (165)
T ss_dssp             CCEEEEEE-----CSTTSSHHHHHHHHTT
T ss_pred             CcEEEEEE-----CCCCCCHHHHHHHHcC
Confidence            35689999     9999999999998855

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.17  E-value=0.0013  Score=51.80  Aligned_cols=27  Identities=37%  Similarity=0.601  Sum_probs=23.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.++|+     |++||||||+++.|..-+
T Consensus        39 ~~Ge~iaiv-----G~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          39 PAGKTVALV-----GRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CTTCEEEEE-----ECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEE-----CCCCChHHHHHHHHhccc
Confidence            567789999     999999999999997765

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0019  Score=48.46  Aligned_cols=27  Identities=11%  Similarity=0.074  Sum_probs=23.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..+.|.     |+|||||||+|..|+...
T Consensus        21 ~~G~v~~i~-----G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          21 ETGSITEMF-----GEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             ETTSEEEEE-----CCTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEE-----eCCCCCHHHHHHHHHHHH
Confidence            356678888     999999999999998764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0016  Score=51.20  Aligned_cols=28  Identities=36%  Similarity=0.732  Sum_probs=24.2

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-.++|+     |+.||||||+.+.|...+
T Consensus        37 i~~Ge~vaiv-----G~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          37 LRPGEVTALV-----GPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             ECTTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEE-----CCCCCcHHHHHHHHhccc
Confidence            3577788899     999999999999997766

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.11  E-value=0.0017  Score=47.44  Aligned_cols=26  Identities=19%  Similarity=0.314  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ..+.++|+++     |.|||||||+...|..
T Consensus        12 ~~k~~kI~vv-----G~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          12 NHQEHKVIIV-----GLDNAGKTTILYQFSM   37 (177)
T ss_dssp             TTSCEEEEEE-----ESTTSSHHHHHHHHHT
T ss_pred             CCCeEEEEEE-----CCCCCCHHHHHHHHhc
Confidence            3567899999     9999999999998865

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.08  E-value=0.002  Score=50.27  Aligned_cols=27  Identities=37%  Similarity=0.553  Sum_probs=23.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.++--+
T Consensus        30 ~~Ge~~~li-----GpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          30 KDGEFLVLL-----GPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CTTCEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEE-----CCCCChHHHHHHHHHcCC
Confidence            466678888     999999999999997655

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0024  Score=48.09  Aligned_cols=26  Identities=27%  Similarity=0.440  Sum_probs=22.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ...+++++     |+||+|||++++.||.+.
T Consensus        42 ~k~n~lLv-----G~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          42 TKNNPVLI-----GEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred             CCCCeEEE-----ecCCcccHHHHHHHHHHH
Confidence            44578899     999999999999999866

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.06  E-value=0.0011  Score=51.44  Aligned_cols=26  Identities=19%  Similarity=0.143  Sum_probs=22.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..++|.     |+|||||||+|-.++...
T Consensus        35 ~G~~~li~-----G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          35 TQAITEVF-----GEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEEEEEE-----ESTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEE-----cCCCCCHHHHHHHHHHHh
Confidence            56677888     999999999999998764

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.0014  Score=51.18  Aligned_cols=27  Identities=22%  Similarity=0.211  Sum_probs=22.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.|+     ||+||||||+.+.|+--.
T Consensus        29 ~~Ge~~~ii-----G~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          29 PAGQIYGVI-----GASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CSSCEEEEE-----ESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHcCCc
Confidence            456677888     999999999999996544

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0014  Score=50.99  Aligned_cols=26  Identities=31%  Similarity=0.500  Sum_probs=21.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++-.+.++     ||.||||||+.+.|+-.
T Consensus        23 ~~Gei~~ii-----G~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          23 RAGEILHLV-----GPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             ETTCEEECB-----CCTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEE-----CCCCCcHHHHHHHHhCC
Confidence            456667777     99999999999999763

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.04  E-value=0.0023  Score=46.08  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=21.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +..+|+|+     |.||+||||+.+.+...
T Consensus         4 ke~kI~iv-----G~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           4 REMRILIL-----GLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             SCEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            56789999     99999999999988653

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.01  E-value=0.001  Score=52.03  Aligned_cols=27  Identities=30%  Similarity=0.361  Sum_probs=22.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+-.+
T Consensus        30 ~~Gei~~li-----GpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          30 PRGQIVTLI-----GANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEE-----CCCCCcHHHHHHHHhCCC
Confidence            466678888     999999999999996654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.94  E-value=0.0012  Score=52.21  Aligned_cols=27  Identities=33%  Similarity=0.507  Sum_probs=22.6

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+-.+
T Consensus        28 ~~Gei~~li-----G~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          28 NKGDVTLII-----GPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             ETTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEE-----CCCCCcHHHHHHHHHCCC
Confidence            456677888     999999999999997655

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.93  E-value=0.0012  Score=51.58  Aligned_cols=27  Identities=37%  Similarity=0.481  Sum_probs=22.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+-.+
T Consensus        26 ~~Gei~glv-----G~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          26 EEGEIFGLI-----GPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             CTTCEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence            456677788     999999999999997765

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.88  E-value=0.0016  Score=50.41  Aligned_cols=27  Identities=22%  Similarity=0.450  Sum_probs=23.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+--+
T Consensus        24 ~~Ge~~~li-----GpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          24 ESGEYFVIL-----GPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CTTCEEEEE-----CCCTHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEE-----CCCCCcHHHHHHHHhcCc
Confidence            466678888     999999999999997754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.88  E-value=0.0019  Score=49.04  Aligned_cols=27  Identities=26%  Similarity=0.299  Sum_probs=22.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+..+
T Consensus        25 ~~Gei~~l~-----G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          25 EKGNVVNFH-----GPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             ETTCCEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEE-----CCCCChHHHHHHHHhccc
Confidence            456678888     999999999999997654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.88  E-value=0.0021  Score=47.71  Aligned_cols=34  Identities=15%  Similarity=0.160  Sum_probs=27.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD   70 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~   70 (251)
                      .+.-++|.     |++|+||||++-.|.++ |+.+++-|.
T Consensus        14 ~g~gvli~-----G~sG~GKS~lal~l~~~-G~~lvaDD~   47 (177)
T d1knxa2          14 FGVGVLLT-----GRSGIGKSECALDLINK-NHLFVGDDA   47 (177)
T ss_dssp             TTEEEEEE-----ESSSSSHHHHHHHHHTT-TCEEEEEEE
T ss_pred             CCEEEEEE-----cCCCCCHHHHHHHHHHc-CCceecCCe
Confidence            34557788     99999999999999875 888777653

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.83  E-value=0.0019  Score=51.55  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=20.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ....+.|.     |+.|.||||+|+.+.++
T Consensus        43 ~~~~v~I~-----GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLH-----GRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEE-----CSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEE-----CCCCCCHHHHHHHHHHh
Confidence            45567777     99999999999998765

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.82  E-value=0.0024  Score=51.04  Aligned_cols=27  Identities=30%  Similarity=0.421  Sum_probs=23.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.++|+     ||.||||||+.+.|.-.+
T Consensus        60 ~~Ge~vaiv-----G~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          60 EKGEMLAIT-----GSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             CTTCEEEEE-----ESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEE-----CCCCChHHHHHHHHhCCC
Confidence            567778888     999999999999997655

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.80  E-value=0.0028  Score=46.64  Aligned_cols=34  Identities=15%  Similarity=0.183  Sum_probs=27.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD   70 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~   70 (251)
                      .+.-++|.     |++|+||||++-.|.++ |+.+++-|.
T Consensus        14 ~g~gvli~-----G~sg~GKS~la~~l~~~-g~~li~DD~   47 (169)
T d1ko7a2          14 YGVGVLIT-----GDSGIGKSETALELIKR-GHRLVADDN   47 (169)
T ss_dssp             TTEEEEEE-----ESTTSSHHHHHHHHHHT-TCEEEESSE
T ss_pred             CCEEEEEE-----eCCCCCHHHHHHHHHHc-CCeEEeCCe
Confidence            34567778     99999999999998887 887776653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.003  Score=45.01  Aligned_cols=22  Identities=27%  Similarity=0.594  Sum_probs=19.6

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +|+++     |+|++||||+...|...
T Consensus         2 KI~li-----G~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFL-----GLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             EEEEE-----CCCCCCHHHHHHHHhCC
Confidence            58888     99999999999999764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.77  E-value=0.0014  Score=51.14  Aligned_cols=27  Identities=33%  Similarity=0.496  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++-.+.++     ||.||||||+.+.|+--+
T Consensus        29 ~~Ge~~~ii-----G~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          29 ENGERFGIL-----GPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CTTCEEEEE-----CSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEE-----CCCCCcHHHHHHHHHcCc
Confidence            567788888     999999999999997754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.75  E-value=0.0023  Score=47.85  Aligned_cols=22  Identities=18%  Similarity=0.274  Sum_probs=19.7

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ++|+++     |.|||||||+...|..
T Consensus        24 ~~I~lv-----G~~n~GKSTLin~L~g   45 (195)
T d1svia_          24 PEIALA-----GRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEE-----EBTTSSHHHHHHHHHT
T ss_pred             CEEEEE-----CCCCCCHHHHHHHhcC
Confidence            479999     9999999999999963

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0028  Score=45.56  Aligned_cols=24  Identities=17%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +.+|+++     |.|++||||+...|...
T Consensus         1 ~~kI~lv-----G~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIA-----GRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEE-----ESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            4678888     99999999999999743

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.70  E-value=0.0032  Score=45.65  Aligned_cols=22  Identities=14%  Similarity=0.279  Sum_probs=19.6

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+++++     |.+|+||||+...|..
T Consensus         3 iKv~li-----G~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVV-----GNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEE-----CSTTSSHHHHHHHHHH
T ss_pred             EEEEEE-----CCCCcCHHHHHHHHHh
Confidence            578888     9999999999998875

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.68  E-value=0.0019  Score=52.75  Aligned_cols=24  Identities=21%  Similarity=0.383  Sum_probs=21.5

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..++|+     |+||+||||+++.|+.-+
T Consensus        29 h~vLl~-----G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          29 GGVLVF-----GDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CCEEEE-----CCGGGCTTHHHHHHHHHS
T ss_pred             CeEEEE-----CCCCccHHHHHHHHHHhC
Confidence            358999     999999999999999866

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.65  E-value=0.0019  Score=50.93  Aligned_cols=28  Identities=25%  Similarity=0.427  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.++-+++|+     |+.||||||+.+.|.-.+
T Consensus        41 i~~Ge~vaiv-----G~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          41 IEKGETVAFV-----GMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             ECTTCEEEEE-----CSTTSSHHHHHTTTTTSS
T ss_pred             EcCCCEEEEE-----CCCCCcHHHHHHHHHhcC
Confidence            3577789999     999999999999997655

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0018  Score=50.00  Aligned_cols=21  Identities=38%  Similarity=0.359  Sum_probs=17.3

Q ss_pred             cccCCCCCChhHHHHHHHHHh
Q 025529           41 WLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~~~   61 (251)
                      +|+|..||||||+.+.|.+..
T Consensus         7 iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           7 LLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEESSSSSCHHHHHHHHHSC
T ss_pred             EEeeCCCCCHHHHHHHHHhcC
Confidence            345999999999999887754

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.63  E-value=0.0048  Score=48.51  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=28.5

Q ss_pred             HHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           20 ELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        20 ~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ++...+......+++|+++     |.+|+||||++..|..+
T Consensus        20 e~~~~l~~~~~~~l~I~Lv-----G~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          20 ELLGNLKQEDVNSLTILVM-----GKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             HHHHHHHHTTCCEEEEEEE-----ESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHhhcCCCCcEEEEE-----CCCCCcHHHHHHHHhCC
Confidence            4445555556778999999     99999999999998643

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0046  Score=48.99  Aligned_cols=26  Identities=19%  Similarity=0.268  Sum_probs=22.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ...+++++     |+||+|||++++.|+.+.
T Consensus        38 ~k~n~lLV-----G~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          38 RKNNPLLV-----GESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SSCEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEE-----CCCCCcHHHHHHHHHHHH
Confidence            44578899     999999999999999875

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.58  E-value=0.0041  Score=45.01  Aligned_cols=23  Identities=35%  Similarity=0.362  Sum_probs=20.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ++|+++     |++|+||||+...|...
T Consensus         3 ~ki~i~-----G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           3 MELTLV-----GLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             EEEEEE-----CCCCCCHHHHHHHHHcC
Confidence            578899     99999999999988653

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.49  E-value=0.0031  Score=53.02  Aligned_cols=27  Identities=33%  Similarity=0.460  Sum_probs=21.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      +.-.|++.     ||.||||||....+-+..+
T Consensus       157 ~~GliLvt-----GpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         157 PHGIILVT-----GPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSEEEEEE-----CSTTSCHHHHHHHHHHHHC
T ss_pred             hhceEEEE-----cCCCCCccHHHHHHhhhhc
Confidence            44456777     9999999998888877763

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.0032  Score=52.17  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=16.3

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPII   57 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~L   57 (251)
                      ....+|.     ||||+||||+...+
T Consensus       163 ~~~~vI~-----G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVIS-----GGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEE-----CCTTSTHHHHHHHH
T ss_pred             CCeEEEE-----cCCCCCceehHHHH
Confidence            3467777     99999999887544

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.40  E-value=0.0048  Score=47.49  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=22.8

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ++..+++.     |+||||||++|..++...
T Consensus        25 ~gsl~li~-----G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          25 KDSIILAT-----GATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SSCEEEEE-----ECTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEE-----eCCCCCHHHHHHHHHHHH
Confidence            56678888     999999999999998886

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.37  E-value=0.0049  Score=46.17  Aligned_cols=23  Identities=26%  Similarity=0.575  Sum_probs=20.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +.++|+     |+|++||||+...|...
T Consensus         4 p~V~lv-----G~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIA-----GPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            478888     99999999999999754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.36  E-value=0.0035  Score=48.03  Aligned_cols=26  Identities=15%  Similarity=0.121  Sum_probs=21.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++..++|.     |+|||||||+|-.++..
T Consensus        32 ~~G~~~li~-----G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          32 ETGSITELF-----GEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             ESSSEEEEE-----ESTTSSHHHHHHHHTTT
T ss_pred             cCCeEEEEE-----cCCCCCHHHHHHHHHHH
Confidence            356678888     99999999999888654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.26  E-value=0.0062  Score=44.40  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=19.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+|+++     |.+|+||||+...|..
T Consensus         3 ~Ki~~v-----G~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIIL-----GDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEE-----CCTTSSHHHHHHHHHH
T ss_pred             EEEEEE-----CCCCcCHHHHHHHHHc
Confidence            368888     9999999999998864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.26  E-value=0.0065  Score=44.70  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=22.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+++++|+     |.+|+||||+...|...
T Consensus         7 ~~~kV~ii-----G~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           7 DAIKVAIV-----GRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             SCEEEEEE-----CSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEE-----CCCCCCHHHHHHHHHCC
Confidence            57889999     99999999999988653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0059  Score=45.08  Aligned_cols=22  Identities=32%  Similarity=0.395  Sum_probs=19.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+++++     |.+|+||||+.+.|..
T Consensus         6 ~Ki~iv-----G~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLAL-----GDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEE-----SCTTSSHHHHHHHHHC
T ss_pred             EEEEEE-----CCCCcCHHHHHHHHhc
Confidence            468888     9999999999998864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0076  Score=46.34  Aligned_cols=26  Identities=15%  Similarity=-0.010  Sum_probs=22.2

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++..++|.     |+||||||++|..++..
T Consensus        35 p~G~~~~i~-----G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          35 ESMAITEAF-----GEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSSEEEEEE-----CCTTCTHHHHHHHHHHH
T ss_pred             cCCEEEEEE-----CCCCCCHHHHHHHHHHH
Confidence            456678888     99999999999999864

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.21  E-value=0.013  Score=45.64  Aligned_cols=42  Identities=24%  Similarity=0.356  Sum_probs=30.6

Q ss_pred             hhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           15 VDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +..|+.+.............++|.     |++|+||+++|+.|...-
T Consensus         6 S~~~~~~~~~~~~~a~~~~pvlI~-----Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2           6 SPKMKEILEKIKKISCAECPVLIT-----GESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             SHHHHHHHHHHHHHTTCCSCEEEE-----CSTTSSHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEE-----CCCCcCHHHHHHHHHHhc
Confidence            455666766665443333448888     999999999999998654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.20  E-value=0.0065  Score=44.14  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.2

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +++++     |.+|+||||+...|...
T Consensus         7 Ki~vv-----G~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILII-----GNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             EEEEE-----CCCCcCHHHHHHHHHcC
Confidence            58888     99999999999988653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0062  Score=44.49  Aligned_cols=25  Identities=20%  Similarity=0.400  Sum_probs=21.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+..+++++     |.+|+||||+...|..
T Consensus         4 ~~~~Kv~lv-----G~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           4 SETHKLVVV-----GGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             SCEEEEEEE-----ECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEE-----CCCCcCHHHHHHHHHh
Confidence            345689999     9999999999998865

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.17  E-value=0.0042  Score=45.38  Aligned_cols=26  Identities=23%  Similarity=0.347  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .++.++++++     |.+|+||||+.+.|..
T Consensus         9 ~~k~~kIvlv-----G~~~vGKTSli~rl~~   34 (173)
T d1e0sa_           9 GNKEMRILML-----GLDAAGKTTILYKLKL   34 (173)
T ss_dssp             TTCCEEEEEE-----EETTSSHHHHHHHTTC
T ss_pred             CCCeEEEEEE-----CCCCCCHHHHHHHHhc
Confidence            4577899999     9999999999998864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.14  E-value=0.011  Score=44.47  Aligned_cols=33  Identities=15%  Similarity=0.148  Sum_probs=27.1

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA   67 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~   67 (251)
                      .+...++|.     |||++|||+++..|.+-++-.+++
T Consensus        51 PKkn~i~~~-----GP~~TGKS~f~~sl~~~l~G~vis   83 (205)
T d1tuea_          51 PKKNCLVFC-----GPANTGKSYFGMSFIHFIQGAVIS   83 (205)
T ss_dssp             TTCSEEEEE-----SCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             CCceEEEEE-----CCCCccHHHHHHHHHHHhCCEEEe
Confidence            445789999     999999999999999988654444

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0071  Score=44.20  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=19.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+++++     |.+|+||||+.+.+..
T Consensus         5 ~Ki~vv-----G~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLI-----GDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEE-----SSTTSSHHHHHHHHHH
T ss_pred             EEEEEE-----CCCCcCHHHHHHHHHh
Confidence            468888     9999999999998855

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0075  Score=44.00  Aligned_cols=22  Identities=32%  Similarity=0.447  Sum_probs=19.0

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+++++     |.+|+||||+...+..
T Consensus         4 ~Kivvv-----G~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIII-----GDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEE-----SSTTSSHHHHHHHHHH
T ss_pred             EEEEEE-----CCCCcCHHHHHHHHhc
Confidence            368888     9999999999998764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.06  E-value=0.007  Score=45.46  Aligned_cols=22  Identities=18%  Similarity=0.173  Sum_probs=19.2

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .|+|+     |+|+|||||+...|...
T Consensus         2 ~V~iv-----G~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFV-----GLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             EEEEE-----CCCCCCHHHHHHHHHcC
Confidence            57788     99999999999999764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.03  E-value=0.0071  Score=43.94  Aligned_cols=20  Identities=25%  Similarity=0.503  Sum_probs=17.4

Q ss_pred             EEEEeecccCCCCCChhHHHHHHHH
Q 025529           35 LILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        35 i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      |+++     |.++|||||+.+.|..
T Consensus         3 V~li-----G~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           3 VLIV-----GRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEE-----CCTTSSHHHHHHHHHC
T ss_pred             EEEE-----CCCCCCHHHHHHHHhC
Confidence            5666     9999999999999964

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0056  Score=44.35  Aligned_cols=24  Identities=13%  Similarity=0.335  Sum_probs=20.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +..+++++     |.+|+||||+...|..
T Consensus         3 k~~Kv~li-----G~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAIL-----GYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEE-----ESTTSSHHHHHHHHHH
T ss_pred             cceEEEEE-----CCCCcCHHHHHHHHHh
Confidence            45689999     9999999999999865

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.00  E-value=0.0064  Score=41.85  Aligned_cols=20  Identities=10%  Similarity=0.112  Sum_probs=17.7

Q ss_pred             ccCCCCCChhHHHHHHHHHh
Q 025529           42 LAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~~   61 (251)
                      ++|-+||||||+|..|...+
T Consensus        11 ~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3          11 LGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             ECTTCCSCHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHH
Confidence            44999999999999998776

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.0069  Score=44.06  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=19.9

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+++++     |.+|+||||+.+.|...
T Consensus         6 ~Ki~lv-----G~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           6 FKIVLI-----GNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred             EEEEEE-----CCCCcCHHHHHHHHHhC
Confidence            468888     99999999999998763

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0072  Score=44.05  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=19.5

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+|+++     |.+|+||||+...|..
T Consensus         6 ~KI~lv-----G~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVI-----GNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEE-----ESTTSSHHHHHHHHHH
T ss_pred             EEEEEE-----CCCCcCHHHHHHHHHh
Confidence            468899     9999999999998864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.0074  Score=43.60  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=19.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+++++     |.+|+||||+.+.|..
T Consensus         3 ~Ki~vv-----G~~~vGKTSli~~l~~   24 (166)
T d1g16a_           3 MKILLI-----GDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEE-----ESTTSSHHHHHHHHHH
T ss_pred             EEEEEE-----CCCCcCHHHHHHHHHh
Confidence            357888     9999999999998865

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0086  Score=43.29  Aligned_cols=24  Identities=17%  Similarity=0.408  Sum_probs=20.5

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+++++     |.+|+||||+...+...
T Consensus         3 ~~Ki~lv-----G~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           3 EYKVVVL-----GSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEE-----CCCCcCHHHHHHHHHhC
Confidence            4578899     99999999999988653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.0072  Score=44.53  Aligned_cols=25  Identities=12%  Similarity=0.146  Sum_probs=21.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +..+++++     |.+|+|||++.+.|...
T Consensus         4 ~~iKivvi-----G~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           4 QAIKCVVV-----GDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEEE-----CCCCCCHHHHHHHHHhC
Confidence            45789999     99999999999988653

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.91  E-value=0.0051  Score=50.07  Aligned_cols=25  Identities=36%  Similarity=0.401  Sum_probs=21.8

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +.+|++.     |++||||||+.+.|....
T Consensus       166 ~~nili~-----G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         166 GKNVIVC-----GGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             TCCEEEE-----ESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEE-----eeccccchHHHHHHhhhc
Confidence            3458889     999999999999998876

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.89  E-value=0.0054  Score=45.12  Aligned_cols=25  Identities=28%  Similarity=0.484  Sum_probs=22.0

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHH
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIK   58 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La   58 (251)
                      ..+..+|+++     |.+||||||+.+.|.
T Consensus        14 ~~k~~KI~lv-----G~~~vGKTsLi~~l~   38 (182)
T d1moza_          14 SNKELRILIL-----GLDGAGKTTILYRLQ   38 (182)
T ss_dssp             CSSCEEEEEE-----EETTSSHHHHHHHTC
T ss_pred             CCceEEEEEE-----CCCCCCHHHHHHHHh
Confidence            4578899999     999999999998774

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.83  E-value=0.0076  Score=43.64  Aligned_cols=23  Identities=22%  Similarity=0.370  Sum_probs=20.3

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ..+++++     |.+|+||||+.+.|..
T Consensus         4 ~~Ki~lv-----G~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           4 ELKVCLL-----GDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEE-----CCTTSSHHHHHHHHHH
T ss_pred             eeEEEEE-----CCCCcCHHHHHHHHHh
Confidence            4578999     9999999999999865

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.0096  Score=43.03  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.2

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+++++     |.+|+||||+.+.|..
T Consensus         5 ~Kivlv-----G~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIII-----GDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEE-----CSTTSSHHHHHHHHHH
T ss_pred             EEEEEE-----CCCCcCHHHHHHHHHh
Confidence            468888     9999999999998865

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.011  Score=42.67  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.4

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+++++     |.+|+||||+.+.+..
T Consensus         4 fKivlv-----G~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLL-----GEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEE-----CCTTSCHHHHHHHHHH
T ss_pred             EEEEEE-----CCCCcCHHHHHHHHHh
Confidence            468888     9999999999998865

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.70  E-value=0.011  Score=43.51  Aligned_cols=21  Identities=24%  Similarity=0.480  Sum_probs=18.6

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +++++     |.+|+||||+.+.|..
T Consensus         4 Kv~vv-----G~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIIL-----GDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEE-----CCTTSSHHHHHHHHHH
T ss_pred             EEEEE-----CCCCcCHHHHHHHHHh
Confidence            57888     9999999999998865

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.69  E-value=0.005  Score=45.04  Aligned_cols=24  Identities=13%  Similarity=0.297  Sum_probs=21.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ..++|+|+     |.|++||||+.+.|..
T Consensus        15 ~~~~I~lv-----G~~NvGKSSL~n~L~~   38 (188)
T d1puia_          15 TGIEVAFA-----GRSNAGKSSALNTLTN   38 (188)
T ss_dssp             CSEEEEEE-----ECTTSSHHHHHTTTCC
T ss_pred             cCCEEEEE-----CCCCCCHHHHHHHHhC
Confidence            46889999     9999999999988844

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.63  E-value=0.0033  Score=45.10  Aligned_cols=23  Identities=30%  Similarity=0.575  Sum_probs=20.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ++|+++     |.|++||||+...|...
T Consensus         1 ikI~li-----G~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           1 LRMVIV-----GKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEEE-----CCHHHHTCHHHHHHHHH
T ss_pred             CEEEEE-----CCCCCCHHHHHHHHhCC
Confidence            468888     99999999999999754

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.63  E-value=0.011  Score=45.07  Aligned_cols=27  Identities=19%  Similarity=0.044  Sum_probs=23.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..++|.     |+||+|||+++..++...
T Consensus        32 ~~G~l~~i~-----G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          32 ESQSVTEFA-----GVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             ETTEEEEEE-----ESTTSSHHHHHHHHHHHT
T ss_pred             cCCeEEEEE-----eCCCCCHHHHHHHHHHHH
Confidence            356678888     999999999999998755

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.011  Score=43.00  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=18.6

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +|+++     |.+|+||||+...+..
T Consensus         8 KI~vv-----G~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILL-----GDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEE-----CCTTSSHHHHHHHHHH
T ss_pred             EEEEE-----CCCCCCHHHHHHHHHh
Confidence            58888     9999999999988865

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.60  E-value=0.011  Score=42.40  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+++++     |.+|+||||+...+..
T Consensus         3 ~Kv~li-----G~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           3 FKIIVI-----GDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEE-----CCTTSSHHHHHHHHHH
T ss_pred             EEEEEE-----CCCCcCHHHHHHHHHh
Confidence            357888     9999999999998865

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.59  E-value=0.0094  Score=45.17  Aligned_cols=25  Identities=20%  Similarity=0.198  Sum_probs=20.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .++..++|.     |+||+|||+++..++.
T Consensus        24 ~~G~~~~I~-----G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          24 PIGRSTLVS-----GTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             ETTSEEEEE-----ESTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEE-----eCCCCCHHHHHHHHHH
Confidence            467788888     9999999999976643

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.011  Score=42.82  Aligned_cols=21  Identities=24%  Similarity=0.376  Sum_probs=18.4

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +++++     |.+|+||||+...+..
T Consensus         4 Ki~vi-----G~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVF-----GAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEE-----CCTTSSHHHHHHHHHT
T ss_pred             EEEEE-----CCCCCCHHHHHHHHHh
Confidence            57888     9999999999988764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.012  Score=42.67  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.2

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +++++     |.+|+||||+...|...
T Consensus         8 Ki~vv-----G~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLL-----GESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             EEEEE-----CCCCcCHHHHHHHHHhC
Confidence            57888     99999999999998753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.011  Score=43.01  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .-+++++     |.+|+||||+.+.+..
T Consensus         5 ~~Ki~lv-----G~~~vGKTsLi~r~~~   27 (171)
T d2erya1           5 KYRLVVV-----GGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEE-----ECTTSSHHHHHHHHHH
T ss_pred             ceEEEEE-----CCCCCCHHHHHHHHHh
Confidence            3578999     9999999999998865

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.49  E-value=0.0083  Score=43.92  Aligned_cols=20  Identities=25%  Similarity=0.340  Sum_probs=17.6

Q ss_pred             EEEEeecccCCCCCChhHHHHHHHH
Q 025529           35 LILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        35 i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      |+|+     |.|++||||+...|..
T Consensus         3 I~lv-----G~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           3 IIFA-----GRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEE-----EBTTSSHHHHHHHHHS
T ss_pred             EEEE-----CCCCCCHHHHHHHHhC
Confidence            6677     9999999999999964

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.012  Score=42.64  Aligned_cols=21  Identities=33%  Similarity=0.756  Sum_probs=18.1

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +|+++     |.+|+||||+.+.+..
T Consensus         3 Ki~lv-----G~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLL-----GAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEE-----CCTTSSHHHHHHHHHT
T ss_pred             EEEEE-----CCCCcCHHHHHHHHhC
Confidence            57788     9999999999988754

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.014  Score=42.33  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=19.9

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+++++     |.+|+|||++.+.+...
T Consensus         3 iKi~lv-----G~~~vGKTsli~r~~~~   25 (168)
T d2atva1           3 VKLAIF-----GRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred             EEEEEE-----CCCCCCHHHHHHHHHhC
Confidence            468888     99999999999988763

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.41  E-value=0.014  Score=42.26  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=19.9

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+++++     |.+|+|||++.+.+...
T Consensus         4 iKi~vv-----G~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           4 IKLVLL-----GEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred             EEEEEE-----CCCCcCHHHHHHHHHhC
Confidence            578899     99999999999987653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.011  Score=42.60  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=19.4

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      -+|+++     |.+|+||||+...|..
T Consensus         4 ~Ki~vi-----G~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVV-----GAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEE-----ESTTSSHHHHHHHHHH
T ss_pred             eEEEEE-----CCCCCCHHHHHHHHHh
Confidence            468888     9999999999998865

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.014  Score=42.58  Aligned_cols=24  Identities=25%  Similarity=0.477  Sum_probs=20.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +..+++++     |.+|+||||+.+.|..
T Consensus         6 ~~iKi~vv-----G~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           6 TTLKILII-----GESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEEEE-----CSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEE-----CCCCcCHHHHHHHHHh
Confidence            44679999     9999999999998864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.36  E-value=0.012  Score=43.76  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=19.0

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+++++     |.+|+||||+...|..
T Consensus         7 ~Kivvv-----G~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           7 FKLLLI-----GNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEE-----ESTTSSHHHHHHHHHH
T ss_pred             EEEEEE-----CCCCcCHHHHHHHHhh
Confidence            358888     9999999999998865

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.015  Score=42.14  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=19.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+++++     |.+|+|||++...+..
T Consensus         7 fKi~vv-----G~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           7 FKVMLV-----GDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEE-----CSTTSSHHHHHHHHHH
T ss_pred             EEEEEE-----CCCCcCHHHHHHHHHh
Confidence            468888     9999999999998755

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.28  E-value=0.011  Score=46.74  Aligned_cols=15  Identities=27%  Similarity=0.426  Sum_probs=12.7

Q ss_pred             EEEEeecccCCCCCChhHHH
Q 025529           35 LILIIVWLAGPPGSGKGTQS   54 (251)
Q Consensus        35 i~i~ii~i~G~~gsGKST~a   54 (251)
                      ++|.     |+|||||||++
T Consensus        17 ~lI~-----g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVL-----AGAGSGKTRVI   31 (306)
T ss_dssp             EEEC-----CCTTSCHHHHH
T ss_pred             EEEE-----eeCCccHHHHH
Confidence            6677     99999999864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.28  E-value=0.023  Score=44.53  Aligned_cols=27  Identities=15%  Similarity=0.213  Sum_probs=22.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .++..++|.     |+||+||||++..++-.+
T Consensus        33 ~~G~l~vi~-----G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          33 RGGEVIMVT-----SGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             CTTCEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEE-----eCCCCCHHHHHHHHHHhh
Confidence            467788888     999999999988887543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.013  Score=42.14  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=18.6

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +++++     |.+|+||||+.+.|..
T Consensus         2 Kv~vv-----G~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFL-----GEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEE-----ESTTSSHHHHHHHHHH
T ss_pred             EEEEE-----CCCCcCHHHHHHHHHh
Confidence            57788     9999999999999865

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.24  E-value=0.014  Score=42.63  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.1

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .|+++     |.+|+||||+...|...
T Consensus         7 ~I~lv-----G~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIV-----GKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEE-----CSTTSSHHHHHHHHHTS
T ss_pred             EEEEE-----CCCCCCHHHHHHHHhCC
Confidence            57777     99999999999999754

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.23  E-value=0.015  Score=43.75  Aligned_cols=28  Identities=11%  Similarity=-0.028  Sum_probs=24.7

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ...++.++|.     |++|+||||+|..|++..
T Consensus        12 ~~~~~~~l~~-----G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          12 KSEGISILIN-----GEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             TCSSEEEEEE-----CSSSSHHHHHHHHHHHHH
T ss_pred             cCCCceEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            3468889999     999999999999999865

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.014  Score=42.56  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=19.8

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+++++     |.+|+|||++...+...
T Consensus         3 ~Kivvv-----G~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIV-----GDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred             EEEEEE-----CCCCcCHHHHHHHHHhC
Confidence            468888     99999999999888763

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.015  Score=42.29  Aligned_cols=21  Identities=43%  Similarity=0.716  Sum_probs=18.5

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +++++     |.+|+||||+.+.+..
T Consensus         5 Kv~lv-----G~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLI-----GEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEE-----CCTTSSHHHHHHHHHC
T ss_pred             EEEEE-----CCCCcCHHHHHHHHHh
Confidence            57888     9999999999998864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.016  Score=41.81  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=20.3

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+|+++     |.+|+|||++.+.+...
T Consensus         3 ~~Kivvv-----G~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           3 EYKLVVL-----GSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEE-----CSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEE-----CCCCCCHHHHHHHHHcC
Confidence            3468888     99999999999988653

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.16  E-value=0.016  Score=41.97  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=19.2

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+++++     |.+|+||||+.+.+..
T Consensus         5 ~Kivlv-----G~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMV-----GSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEE-----CSTTSSHHHHHHHHHH
T ss_pred             eEEEEE-----CCCCcCHHHHHHHHHh
Confidence            368888     9999999999998864

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=93.99  E-value=0.02  Score=42.90  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=19.3

Q ss_pred             eEEEEEeecccCC-CCCChhHHHHHHHHHh
Q 025529           33 KRLILIIVWLAGP-PGSGKGTQSPIIKDEY   61 (251)
Q Consensus        33 ~~i~i~ii~i~G~-~gsGKST~a~~La~~~   61 (251)
                      +++.+.     |. +|+||||++-.|+..+
T Consensus         2 ~~~~i~-----gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVT-----GTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEE-----ESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEE-----ECCCCccHHHHHHHHHHHH
Confidence            345555     99 5999999999988877

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.87  E-value=0.017  Score=41.96  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=18.0

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .|+|+     |.|++||||+..+|..
T Consensus         7 ~I~ii-----G~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIV-----GRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEE-----CSSSSSHHHHHHHHHT
T ss_pred             EEEEE-----CCCCCCHHHHHHHHhC
Confidence            36667     9999999999999964

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.87  E-value=0.012  Score=43.24  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=17.8

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .++|+     |+|++||||+...|..
T Consensus         3 ~Vaii-----G~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLV-----GFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEE-----SSTTSSHHHHHHHSEE
T ss_pred             eEEEE-----CCCCCCHHHHHHHHhC
Confidence            36777     9999999999998854

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.85  E-value=0.012  Score=43.12  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=20.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +..+|+++     |.|.+||||+...|.+
T Consensus         4 k~inIaii-----G~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           4 KNINLGIF-----GHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEEE-----ECTTSSHHHHHHHHHT
T ss_pred             CCEEEEEE-----eCCCCcHHHHHHHHHH
Confidence            34578999     9999999999999964

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.81  E-value=0.011  Score=43.04  Aligned_cols=21  Identities=33%  Similarity=0.502  Sum_probs=8.9

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +|+++     |.+|+||||+.+.|..
T Consensus         8 Ki~vv-----G~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLI-----GDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEE-----CCCCC-----------
T ss_pred             EEEEE-----CCCCcCHHHHHHHHHh
Confidence            58888     9999999999987754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.79  E-value=0.019  Score=43.97  Aligned_cols=25  Identities=24%  Similarity=0.262  Sum_probs=21.0

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ++...+|+     |++|+||||+...|...
T Consensus        94 ~~kt~~~~-----G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          94 KGKISTMA-----GLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SSSEEEEE-----CSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEE-----CCCCCCHHHHHHhhcch
Confidence            45678899     99999999999988543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.77  E-value=0.021  Score=42.18  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=18.8

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPII   57 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~L   57 (251)
                      -.+|+++     |.+||||||+...+
T Consensus         2 ~iKivll-----G~~~vGKTsll~r~   22 (200)
T d1zcba2           2 LVKILLL-----GAGESGKSTFLKQM   22 (200)
T ss_dssp             CEEEEEE-----CSTTSSHHHHHHHH
T ss_pred             eEEEEEE-----CCCCCCHHHHHHHH
Confidence            3578899     99999999999998

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.75  E-value=0.019  Score=42.07  Aligned_cols=23  Identities=13%  Similarity=0.400  Sum_probs=19.8

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+++++     |.+|+|||++.+.+...
T Consensus         3 ~Kivli-----G~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           3 CKIVVV-----GDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred             eEEEEE-----CCCCcCHHHHHHHHHhC
Confidence            568899     99999999999888663

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.015  Score=45.75  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=21.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+....|.     |+|||||||+|-.++...
T Consensus        53 ~g~itei~-----G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          53 MGRIVEIY-----GPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             TTSEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEe-----cCCCcHHHHHHHHHHHHH
Confidence            45567777     999999999998887765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.026  Score=41.22  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=21.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +-.+++++     |.+|+||||+...+...
T Consensus         4 p~~ki~vl-----G~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           4 PELRLGVL-----GDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             CEEEEEEE-----CCTTTTHHHHHHHHHHS
T ss_pred             CcEEEEEE-----CCCCCCHHHHHHHHHhC
Confidence            56789999     99999999999977553

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.02  Score=42.13  Aligned_cols=24  Identities=13%  Similarity=0.169  Sum_probs=20.0

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+++++     |.+|+|||++.+.|...
T Consensus         9 ~~Ki~lv-----G~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1           9 MLKCVVV-----GDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEEE-----ECTTSSHHHHHHHHHHS
T ss_pred             EEEEEEE-----CCCCCCHHHHHHHHhhC
Confidence            4568888     99999999999988653

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.0049  Score=45.50  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=18.1

Q ss_pred             cccCCCCCChhHHHHHHHHHh
Q 025529           41 WLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~~~   61 (251)
                      +|+|+.||||||+..+|.--+
T Consensus        28 vi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHh
Confidence            455999999999999997665

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.66  E-value=0.013  Score=42.87  Aligned_cols=20  Identities=25%  Similarity=0.448  Sum_probs=17.6

Q ss_pred             EEEEeecccCCCCCChhHHHHHHHH
Q 025529           35 LILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        35 i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      |+|+     |.|++||||+...|..
T Consensus         4 Vaiv-----G~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLV-----GYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEE-----CCGGGCHHHHHHHHCS
T ss_pred             EEEE-----CCCCCCHHHHHHHHhC
Confidence            6777     9999999999999854

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.65  E-value=0.02  Score=43.12  Aligned_cols=26  Identities=23%  Similarity=0.217  Sum_probs=22.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +..+|+++     |-+++||||++..|-...
T Consensus         2 ~~ini~ii-----Ghvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           2 PHVNVGTI-----GHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             CEEEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEE-----eCCCCcHHHHHHHHHHHh
Confidence            45789999     999999999999996544

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.57  E-value=0.019  Score=45.82  Aligned_cols=15  Identities=33%  Similarity=0.556  Sum_probs=12.8

Q ss_pred             EEEEeecccCCCCCChhHHH
Q 025529           35 LILIIVWLAGPPGSGKGTQS   54 (251)
Q Consensus        35 i~i~ii~i~G~~gsGKST~a   54 (251)
                      +++.     |+|||||||++
T Consensus        27 ~lV~-----g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIM-----AGAGSGKTRVL   41 (318)
T ss_dssp             EEEE-----ECTTSCHHHHH
T ss_pred             EEEE-----ecCCccHHHHH
Confidence            6777     99999999864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.56  E-value=0.017  Score=48.14  Aligned_cols=26  Identities=27%  Similarity=0.440  Sum_probs=21.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ...+.+++     |+||+|||+++..||.+.
T Consensus        42 ~k~n~llv-----G~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          42 TKNNPVLI-----GEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             SCCCCEEE-----ECTTSCHHHHHHHHHHHH
T ss_pred             CCCCCeEE-----CCCCCCHHHHHHHHHHHH
Confidence            34457888     999999999999998765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.56  E-value=0.027  Score=43.01  Aligned_cols=25  Identities=20%  Similarity=0.221  Sum_probs=21.4

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ++|.|+++     |.+.+||||+...|...
T Consensus         4 r~p~IaIi-----Gh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           4 RSPIVSVL-----GHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCCEEEEE-----CSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEE-----eCCCccHHHHHHHHHhh
Confidence            45669999     99999999999988664

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.50  E-value=0.011  Score=43.76  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=19.9

Q ss_pred             eecccCCCCCChhHHHHHHHHHhC
Q 025529           39 IVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        39 ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      |++|+|+.+||||..|..|+...+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC
Confidence            456679999999999999987654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.40  E-value=0.067  Score=41.92  Aligned_cols=30  Identities=20%  Similarity=0.310  Sum_probs=25.7

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      .+...+++.     ||+++|||+++..|.+.+|..
T Consensus       102 ~k~n~~~l~-----G~~~tGKS~f~~~i~~~lg~~  131 (267)
T d1u0ja_         102 GKRNTIWLF-----GPATTGKTNIAEAIAHTVPFY  131 (267)
T ss_dssp             TTCCEEEEE-----CSTTSSHHHHHHHHHHHSSCE
T ss_pred             CccEEEEEE-----cCCCCCHHHHHHHHHHHhcch
Confidence            456678888     999999999999999988753

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.33  E-value=0.032  Score=40.31  Aligned_cols=24  Identities=25%  Similarity=0.486  Sum_probs=20.2

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +..+++++     |.+|+||||+...+..
T Consensus         3 pt~Ki~lv-----G~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           3 PTYKLVVV-----GDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             CEEEEEEE-----CCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEE-----CCCCcCHHHHHHHHHh
Confidence            34578888     9999999999998865

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.025  Score=41.75  Aligned_cols=23  Identities=13%  Similarity=0.166  Sum_probs=19.8

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .+++++     |.+|+|||++...+...
T Consensus         4 iKvvll-----G~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           4 IKCVVV-----GDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred             eEEEEE-----CCCCcCHHHHHHHHHhC
Confidence            578889     99999999999888653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.015  Score=42.26  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=17.5

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +|+++     |.+|+||||+.+.+..
T Consensus         5 Ki~vv-----G~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLV-----GDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEE-----ECTTSSHHHHHHTTC-
T ss_pred             EEEEE-----CCCCcCHHHHHHHHHh
Confidence            57888     9999999999987744

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.17  E-value=0.04  Score=38.10  Aligned_cols=28  Identities=29%  Similarity=0.248  Sum_probs=21.3

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      -...++.     +|.|||||+++-.+....|..
T Consensus         8 ~~~~ll~-----apTGsGKT~~~~~~~~~~~~~   35 (136)
T d1a1va1           8 FQVAHLH-----APTGSGKSTKVPAAYAAQGYK   35 (136)
T ss_dssp             CEEEEEE-----CCTTSCTTTHHHHHHHTTTCC
T ss_pred             CCEEEEE-----eCCCCCHHHHHHHHHHHcCCc
Confidence            3456777     999999999997776666644

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.84  E-value=0.034  Score=43.31  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=20.2

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      +...+|.     |+||+||||++-.|+...
T Consensus        29 g~~~~i~-----G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          29 GTVGALV-----SPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TSEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEE-----eCCCCCHHHHHHHHHHHH
Confidence            4456667     999999999999988763

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.58  E-value=0.034  Score=40.74  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=21.4

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      -.+++++     |..|+|||++...+....
T Consensus         2 e~Kiv~l-----G~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           2 ELKLLLL-----GTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEEE-----ESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence            3578999     999999999999997653

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=0.1  Score=40.49  Aligned_cols=28  Identities=25%  Similarity=0.369  Sum_probs=21.4

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ......|++.     |.=|+||||++-.|+..+
T Consensus        17 ~~~~~iii~s-----GKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2          17 RNEHGLIMLM-----GKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             TTSCEEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence            3345556666     999999999988887777

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.58  E-value=0.036  Score=42.02  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=20.1

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .-+++++     |..||||||+.+.+...
T Consensus         6 ~~Killl-----G~~~vGKTsll~~~~~~   29 (221)
T d1azta2           6 THRLLLL-----GAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             SEEEEEE-----CSTTSSHHHHHHHHHHH
T ss_pred             cCEEEEE-----CCCCCCHHHHHHHHhcC
Confidence            3478999     99999999999988543

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.33  E-value=0.054  Score=42.46  Aligned_cols=25  Identities=24%  Similarity=0.208  Sum_probs=20.6

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      |..|++.     |.=|+||||++..||..+
T Consensus         8 p~~i~~s-----GKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           8 PPYLFFT-----GKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             CSEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEE-----CCCcChHHHHHHHHHHHH
Confidence            4456666     999999999888888777

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.15  E-value=0.049  Score=39.67  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=20.4

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+++++     |..|+|||++.+.|...
T Consensus         2 e~Kivll-----G~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           2 EVKLLLL-----GAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEEEE-----CSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEE-----CCCCCCHHHHHHHHhhC
Confidence            3578999     99999999999988653

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=92.10  E-value=0.037  Score=37.90  Aligned_cols=19  Identities=26%  Similarity=0.284  Sum_probs=15.5

Q ss_pred             CCeEEEEEeecccCCCCCChhHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQS   54 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a   54 (251)
                      ++.+.++.     +|+|||||+++
T Consensus         6 ~~~~~il~-----~~tGsGKT~~~   24 (140)
T d1yksa1           6 KGMTTVLD-----FHPGAGKTRRF   24 (140)
T ss_dssp             TTCEEEEC-----CCTTSSTTTTH
T ss_pred             cCCcEEEE-----cCCCCChhHHH
Confidence            45677777     99999999766

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.71  E-value=0.044  Score=45.61  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=21.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIK   58 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La   58 (251)
                      .+.+|+++     |.||+||||+...|.
T Consensus        55 ~~l~Iai~-----G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          55 SVLNVAVT-----GETGSGKSSFINTLR   77 (400)
T ss_dssp             CCEEEEEE-----ECTTSSHHHHHHHHH
T ss_pred             CCcEEEEE-----CCCCCCHHHHHHHHh
Confidence            57889999     999999999999995

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.52  E-value=0.14  Score=38.03  Aligned_cols=44  Identities=27%  Similarity=0.246  Sum_probs=31.9

Q ss_pred             CchhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCce
Q 025529           13 PSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH   65 (251)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~   65 (251)
                      +-.+...++++.+.    ...+.++.     +|+|+|||.++-.++.+++...
T Consensus        70 ~Lr~yQ~eav~~~~----~~~~~ll~-----~~tG~GKT~~a~~~~~~~~~~~  113 (206)
T d2fz4a1          70 SLRDYQEKALERWL----VDKRGCIV-----LPTGSGKTHVAMAAINELSTPT  113 (206)
T ss_dssp             CCCHHHHHHHHHHT----TTSEEEEE-----ESSSTTHHHHHHHHHHHSCSCE
T ss_pred             CcCHHHHHHHHHHH----hCCCcEEE-----eCCCCCceehHHhHHHHhcCce
Confidence            34566777777665    22356677     8999999999999888886543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.14  E-value=0.02  Score=44.03  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=20.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ++...+|+     |++|+||||+...|...
T Consensus        96 ~~~~~vl~-----G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          96 QDKTTVFA-----GQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             TTSEEEEE-----ESHHHHHHHHHHHHCC-
T ss_pred             ccceEEEE-----CCCCccHHHHHHhhccH
Confidence            56678899     99999999999998543

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=90.99  E-value=0.046  Score=42.94  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=21.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+...-|.     |++||||||+|-.++...
T Consensus        56 ~g~itei~-----G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          56 RGRITEIY-----GPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             TTSEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEe-----cCCccchHHHHHHHHHHH
Confidence            45567777     999999999998887655

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=90.90  E-value=0.075  Score=39.58  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=20.7

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      +..+|+++     |-+.+||||++..|..
T Consensus         2 p~ini~ii-----GHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           2 PHVNVGTI-----GHVDHGKTTLTAAITK   25 (196)
T ss_dssp             CEEEEEEE-----SSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEE-----eCCCCcHHHHHHHHHH
Confidence            44789999     9999999999998854

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.85  E-value=0.059  Score=40.58  Aligned_cols=20  Identities=25%  Similarity=0.326  Sum_probs=17.3

Q ss_pred             ccCCCCCChhHHHHHHHHHh
Q 025529           42 LAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~~   61 (251)
                      .+|.-|+||||++..||..+
T Consensus         7 ~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           7 ASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EESSSCSCHHHHHHHHHHHH
T ss_pred             ECCCCCChHHHHHHHHHHHH
Confidence            56889999999999888777

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.82  E-value=0.052  Score=41.72  Aligned_cols=22  Identities=32%  Similarity=0.353  Sum_probs=17.8

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ..++|.     ||.++||||..+.++-
T Consensus        42 ~~~iiT-----GpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          42 RMLIIT-----GPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             CEEEEE-----CCTTSSHHHHHHHHHH
T ss_pred             eEEEEe-----ccCchhhHHHHHHHHH
Confidence            456667     9999999999888754

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=90.55  E-value=0.086  Score=41.74  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=27.0

Q ss_pred             HHHHHhhccC-CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           20 ELLRRMKCAS-KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        20 ~~~~~~~~~~-~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+++-+.  | .++-++.|+     |++|+|||+++..+++..
T Consensus        32 r~ID~l~--PigrGQr~~I~-----g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          32 RVLDLAS--PIGRGQRGLIV-----APPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHHHHS--CCBTTCEEEEE-----ECSSSSHHHHHHHHHHHH
T ss_pred             eeeeecc--cccCCCeeeEe-----CCCCCCHHHHHHHHHHHH
Confidence            3444443  4 467789999     999999999999998744

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.13  E-value=0.065  Score=40.89  Aligned_cols=21  Identities=24%  Similarity=0.251  Sum_probs=16.5

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ..+|.     ||..+||||+.+.++-
T Consensus        37 ~~iiT-----GpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          37 LVLIT-----GPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEEE-----SCSSSSHHHHHHHHHH
T ss_pred             EEEEE-----CCCccccchhhhhhHH
Confidence            35555     9999999998887644

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.42  E-value=0.14  Score=38.05  Aligned_cols=25  Identities=24%  Similarity=0.388  Sum_probs=21.4

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ++..+|+++     |...+||||+...|..
T Consensus         6 ~p~ini~ii-----GhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           6 QPEVNIGVV-----GHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCEEEEEE-----CSTTSSHHHHHHHHHS
T ss_pred             CCCeEEEEE-----EccCCcHHHHHHHHHh
Confidence            345689999     9999999999999954

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.33  E-value=0.14  Score=40.29  Aligned_cols=26  Identities=15%  Similarity=0.020  Sum_probs=22.1

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      .+|+++     |..||||||++..|...-|.
T Consensus         7 Rni~i~-----gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           7 RNIGIA-----AHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEE-----ECTTSCHHHHHHHHHHHHTS
T ss_pred             eEEEEE-----eCCCCCHHHHHHHHHHhcCc
Confidence            368999     99999999999999766554

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=89.28  E-value=0.1  Score=43.36  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=17.4

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      -++++     |++|||||++.+.+...
T Consensus        52 H~~I~-----G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          52 HLLVN-----GATGTGKSVLLRELAYT   73 (433)
T ss_dssp             CEEEE-----ECTTSSHHHHHHHHHHH
T ss_pred             eEEEE-----eCCCCcHHHHHHHHHHH
Confidence            37888     99999999987665443

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.82  E-value=0.14  Score=39.48  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=19.2

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .|+|.     |.=|+||||++-.|+..+
T Consensus         3 ~Iai~-----gKGGvGKTT~a~nLA~~L   25 (269)
T d1cp2a_           3 QVAIY-----GKGGIGKSTTTQNLTSGL   25 (269)
T ss_dssp             EEEEE-----ECTTSSHHHHHHHHHHHH
T ss_pred             EEEEE-----CCCcCCHHHHHHHHHHHH
Confidence            45666     999999999998888777

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.71  E-value=0.1  Score=42.74  Aligned_cols=24  Identities=33%  Similarity=0.350  Sum_probs=19.2

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .-+|+     |+.|||||++..+|+=.+|
T Consensus        27 l~~i~-----G~NGsGKS~ileAi~~~lg   50 (427)
T d1w1wa_          27 FTSII-----GPNGSGKSNMMDAISFVLG   50 (427)
T ss_dssp             EEEEE-----CSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEE-----CCCCCCHHHHHHHHHHHhC
Confidence            44677     9999999999999964444

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.66  E-value=0.17  Score=39.53  Aligned_cols=27  Identities=22%  Similarity=0.249  Sum_probs=21.5

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      ..+....|.     |++||||||+|-.++...
T Consensus        58 ~~g~i~e~~-----G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          58 PRGRVIEIY-----GPESSGKTTVALHAVANA   84 (269)
T ss_dssp             CSSSEEEEE-----CSSSSSHHHHHHHHHHHH
T ss_pred             ccceeEEEe-----cCCCcHHHHHHHHHHHHH
Confidence            356667778     999999999998777654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=88.57  E-value=0.16  Score=39.68  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=20.0

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      +++++     |..|+||||++..|.-.-|
T Consensus         4 Nv~ii-----Gh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           4 TVALV-----GHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEE-----ESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEE-----cCCCCcHHHHHHHHHHHcC
Confidence            57788     9999999999999965444

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=88.40  E-value=0.18  Score=38.14  Aligned_cols=30  Identities=20%  Similarity=0.182  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      .++-.+|+++     |-..+||||++..|....|.
T Consensus         6 ~~~~~~i~vi-----GHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3           6 RKEMLRFLTC-----GNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             SCEEEEEEEE-----CCTTSSHHHHHHHHHHHTTC
T ss_pred             cCCcceEEEE-----cCCCCCHHHHHHHHHHHcCC
Confidence            3456778999     99999999999999766653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.32  E-value=0.11  Score=40.86  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=19.1

Q ss_pred             EEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529           34 RLILIIVWLAGPPGSGKGTQSPIIKDEYC   62 (251)
Q Consensus        34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~   62 (251)
                      .-+|+     |+-||||||+..+|+=.+|
T Consensus        26 lnvlv-----G~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          26 VTAIV-----GPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             EEEEE-----CCTTTCSTHHHHHHHHTSC
T ss_pred             eEEEE-----CCCCCcHHHHHHHHHHHhC
Confidence            44666     9999999999999865444

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.27  E-value=0.16  Score=40.14  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      ..+|++-|+     |.|.|||||+-..|..
T Consensus         8 ~~~~kiGiv-----G~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1           8 GNNLKTGIV-----GMPNVGKSTFFRAITK   32 (296)
T ss_dssp             SSCCEEEEE-----ECSSSSHHHHHHHHHH
T ss_pred             CCCcEEEEE-----CCCCCCHHHHHHHHHC
Confidence            457888899     9999999999999975

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.80  E-value=0.27  Score=33.95  Aligned_cols=18  Identities=33%  Similarity=0.323  Sum_probs=14.3

Q ss_pred             CCCCCChhHHHHHHHHHh
Q 025529           44 GPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        44 G~~gsGKST~a~~La~~~   61 (251)
                      ||+.|||||-.-..+.++
T Consensus         9 GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           9 GPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCTTSCHHHHHHHHHHHH
T ss_pred             ecccCHHHHHHHHHHHHH
Confidence            999999999666655555

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.79  E-value=0.44  Score=34.62  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=22.8

Q ss_pred             hhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           15 VDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+...++.....     ..+.++.     +|.|||||.++-.++.
T Consensus        11 r~~Q~~~~~~~~-----~~n~lv~-----~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          11 RIYQEVIYAKCK-----ETNCLIV-----LPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             CHHHHHHHHHGG-----GSCEEEE-----CCTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHh-----cCCeEEE-----eCCCCcHHHHHHHHHH
Confidence            344555555443     2246777     9999999987766654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=87.28  E-value=0.18  Score=37.01  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=19.6

Q ss_pred             CeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      -.+|+++     |-..+||||+...|..
T Consensus         5 ~inIaii-----Ghvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           5 EVNIGMV-----GHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEEEE-----CSTTSSHHHHHHHHHT
T ss_pred             cEEEEEE-----eccCCcHHHHHHHHHh
Confidence            4468888     9999999999999953

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=87.18  E-value=0.17  Score=39.43  Aligned_cols=26  Identities=27%  Similarity=0.390  Sum_probs=23.0

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ..+.++.++     |.|.+||||+...|..+
T Consensus       110 ~~~~~v~vv-----G~PNvGKSsliN~L~~~  135 (273)
T d1puja_         110 PRAIRALII-----GIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCEEEEEE-----ESTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEE-----ecCccchhhhhhhhhcc
Confidence            467889999     99999999999999764

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=86.95  E-value=0.18  Score=39.83  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG   69 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~   69 (251)
                      ....|+|+++     |...|||||+...|   +|.+++-++
T Consensus        21 ~~~lP~ivVv-----G~~ssGKSSliNaL---lG~~~lP~~   53 (306)
T d1jwyb_          21 PLDLPQIVVV-----GSQSSGKSSVLENI---VGRDFLPRG   53 (306)
T ss_dssp             TTCCCEEEEE-----ECSSSSHHHHHHHH---HTSCCCCC-
T ss_pred             CCCCCeEEEE-----eCCCCCHHHHHHHH---hCCCCCCCC
Confidence            3456789999     99999999999999   455554443

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.87  E-value=0.17  Score=37.88  Aligned_cols=19  Identities=26%  Similarity=0.392  Sum_probs=16.0

Q ss_pred             cCCCCCChhHHHHHHHHHh
Q 025529           43 AGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        43 ~G~~gsGKST~a~~La~~~   61 (251)
                      ++.-|+||||++..|+..+
T Consensus         9 ~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           9 SGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             CSSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHH
Confidence            3557999999999998777

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.69  E-value=0.23  Score=37.47  Aligned_cols=28  Identities=29%  Similarity=0.338  Sum_probs=23.1

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      +..+|+++     |--++||||++..|.-..|.
T Consensus         2 p~iNi~vi-----GHVd~GKTTL~~~Ll~~~g~   29 (224)
T d1jnya3           2 PHLNLIVI-----GHVDHGKSTLVGRLLMDRGF   29 (224)
T ss_dssp             CEEEEEEE-----ESTTSSHHHHHHHHHHHHBC
T ss_pred             CccEEEEE-----ecCCCCHHHHHHHHHHHcCC
Confidence            45678999     99999999999988665553

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.67  E-value=0.2  Score=38.36  Aligned_cols=29  Identities=21%  Similarity=0.200  Sum_probs=24.3

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC   64 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~   64 (251)
                      +..+|+++     |-..+||||++..|.-..|..
T Consensus         5 ~~iNi~ii-----GHvD~GKsTl~~~ll~~~g~i   33 (239)
T d1f60a3           5 SHINVVVI-----GHVDSGKSTTTGHLIYKCGGI   33 (239)
T ss_dssp             EEEEEEEE-----ECTTSCHHHHHHHHHHHHSCS
T ss_pred             CccEEEEE-----eCCCCCHHHHHHHHHHHcCCc
Confidence            35789999     999999999999998766643

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.29  E-value=0.25  Score=38.67  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=22.8

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      .++-++.|+     |++|+|||+++..++..
T Consensus        66 gkGQr~~If-----~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          66 AKGGKIGLF-----GGAGVGKTVLIMELINN   91 (276)
T ss_dssp             ETTCEEEEE-----ECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEee-----CCCCCCHHHHHHHHHHH
Confidence            467789999     99999999999988765

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.11  E-value=0.25  Score=34.52  Aligned_cols=26  Identities=19%  Similarity=0.102  Sum_probs=18.9

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~   61 (251)
                      .+..=+++     ||+.|||||-.-....+|
T Consensus         6 ~G~l~lI~-----GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           6 HGWVEVIV-----GPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             CCEEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred             ceeEEEEE-----eccccHHHHHHHHHHHHh
Confidence            34445566     999999999776666665

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.09  E-value=0.19  Score=39.97  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=18.9

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      |.+.++     |.|.+||||+-..|..
T Consensus         1 ~~v~lv-----G~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           1 MEIGVV-----GKPNVGKSTFFSAATL   22 (319)
T ss_dssp             CEEEEE-----ECTTSSHHHHHHHHHC
T ss_pred             CcEeEE-----CCCCCCHHHHHHHHHC
Confidence            467777     9999999999999944

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.69  E-value=0.13  Score=37.94  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=21.0

Q ss_pred             hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHH
Q 025529           16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPI   56 (251)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~   56 (251)
                      +...++...+.    .+..+++.     +|+|||||+++..
T Consensus        28 ~~Q~~ai~~l~----~~~~~il~-----apTGsGKT~~a~l   59 (202)
T d2p6ra3          28 PPQAEAVEKVF----SGKNLLLA-----MPTAAGKTLLAEM   59 (202)
T ss_dssp             CCCHHHHHHHT----TCSCEEEE-----CSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----cCCCEEEE-----cCCCCchhHHHHH
Confidence            33444444444    23457888     9999999988743

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.45  E-value=0.3  Score=37.41  Aligned_cols=30  Identities=23%  Similarity=0.219  Sum_probs=24.4

Q ss_pred             CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      .++..+|+++     |-..+||||++..|.-..|.
T Consensus        21 ~k~~iNi~ii-----GHVD~GKSTL~~~Ll~~~g~   50 (245)
T d1r5ba3          21 GKEHVNIVFI-----GHVDAGKSTLGGNILFLTGM   50 (245)
T ss_dssp             CCEEEEEEEE-----ECGGGTHHHHHHHHHHHTTS
T ss_pred             CCCceEEEEE-----eeCCCCHHHHHHHHHHHcCC
Confidence            3456679999     99999999999999766654

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.28  E-value=0.31  Score=36.75  Aligned_cols=24  Identities=17%  Similarity=0.242  Sum_probs=18.6

Q ss_pred             CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529           31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~   59 (251)
                      .+..+++.     +|.|||||+.+-..+.
T Consensus        57 ~g~~~~i~-----apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          57 RKESFAAT-----APTGVGKTSFGLAMSL   80 (237)
T ss_dssp             TTCCEECC-----CCBTSCSHHHHHHHHH
T ss_pred             CCCCEEEE-----ecCCChHHHHHHHHHH
Confidence            45568888     9999999987765544

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=85.05  E-value=0.18  Score=40.14  Aligned_cols=18  Identities=33%  Similarity=0.521  Sum_probs=15.2

Q ss_pred             eEEEEEeecccCCCCCChhHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSP   55 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~   55 (251)
                      -..+|+     |.+|+|||||+.
T Consensus        15 ~~alfF-----GLSGTGKTTLs~   32 (313)
T d2olra1          15 DVAVFF-----GLSGTGKTTLST   32 (313)
T ss_dssp             CEEEEE-----CSTTSSHHHHHC
T ss_pred             CEEEEE-----ccCCCCccccee
Confidence            356888     999999999884

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=85.02  E-value=0.73  Score=34.94  Aligned_cols=28  Identities=14%  Similarity=0.001  Sum_probs=23.3

Q ss_pred             cCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      ....+|..++.     |..|||||-++-..+..
T Consensus        72 ~~~~~~~~LL~-----GdvGsGKT~V~~~a~~~   99 (233)
T d2eyqa3          72 CQPLAMDRLVC-----GDVGFGKTEVAMRAAFL   99 (233)
T ss_dssp             HSSSCCEEEEE-----CCCCTTTHHHHHHHHHH
T ss_pred             hccCccCeEEE-----cCCCCCcHHHHHHHHHH
Confidence            45678899999     99999999998776654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=84.89  E-value=0.32  Score=33.85  Aligned_cols=20  Identities=20%  Similarity=0.190  Sum_probs=13.7

Q ss_pred             ccCCCCCChhHHHHHHHHHh
Q 025529           42 LAGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        42 i~G~~gsGKST~a~~La~~~   61 (251)
                      |+||+.|||||-.-....++
T Consensus         7 i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           7 ITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             EECSTTSCHHHHHHHHHHHH
T ss_pred             EEccccCHHHHHHHHHHHHH
Confidence            34999999999444444444

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=84.77  E-value=0.33  Score=37.79  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=18.7

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      |++=|+     |.|.+||||+-+.|...
T Consensus         3 ~~~Giv-----G~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           3 FKCGIV-----GLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CEEEEE-----CCTTSSHHHHHHHHHHT
T ss_pred             ceEEEE-----CCCCCCHHHHHHHHHCC
Confidence            455566     99999999999999743

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.35  E-value=0.35  Score=37.67  Aligned_cols=19  Identities=26%  Similarity=0.335  Sum_probs=15.8

Q ss_pred             cCCCCCChhHHHHHHHHHh
Q 025529           43 AGPPGSGKGTQSPIIKDEY   61 (251)
Q Consensus        43 ~G~~gsGKST~a~~La~~~   61 (251)
                      +|.=|+||||++-.|+..+
T Consensus         8 sgKGGVGKTT~a~NLA~~L   26 (289)
T d2afhe1           8 YGKGGIGKSTTTQNLVAAL   26 (289)
T ss_dssp             EECTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            4999999999888776665

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.00  E-value=0.57  Score=36.27  Aligned_cols=40  Identities=18%  Similarity=0.219  Sum_probs=28.7

Q ss_pred             hHHHHHHHHhh--ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529           16 DLMTELLRRMK--CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE   60 (251)
Q Consensus        16 ~~~~~~~~~~~--~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~   60 (251)
                      +-.+.+..++.  +....+|.-++.     |..|||||-++-..+..
T Consensus        86 ~~Q~~ai~ei~~d~~~~~~m~rLL~-----GdvGSGKT~Va~~a~~~  127 (264)
T d1gm5a3          86 NAQKRAHQEIRNDMISEKPMNRLLQ-----GDVGSGKTVVAQLAILD  127 (264)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCCCEEE-----CCSSSSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhccCcceeeee-----ccccccccHHHHHHHHH
Confidence            33445555553  345678899999     99999999998766543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.69  E-value=0.33  Score=39.17  Aligned_cols=26  Identities=15%  Similarity=0.238  Sum_probs=22.5

Q ss_pred             eEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529           33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCL   63 (251)
Q Consensus        33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~   63 (251)
                      .+|+++     |..++||||++..|-...|.
T Consensus        18 RNI~ii-----Ghvd~GKTTL~d~Ll~~~g~   43 (341)
T d1n0ua2          18 RNMSVI-----AHVDHGKSTLTDSLVQRAGI   43 (341)
T ss_dssp             EEEEEE-----CCGGGTHHHHHHHHHHHHBC
T ss_pred             cEEEEE-----eCCCCcHHHHHHHHHHHCCC
Confidence            469999     99999999999999776654

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.39  E-value=0.33  Score=38.73  Aligned_cols=19  Identities=32%  Similarity=0.497  Sum_probs=15.6

Q ss_pred             CeEEEEEeecccCCCCCChhHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSP   55 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~   55 (251)
                      +-.-+|+     |.+|+||||++.
T Consensus        14 gd~alfF-----GLSGTGKTTLs~   32 (323)
T d1ii2a1          14 GDVTVFF-----GLSGTGKTTLSA   32 (323)
T ss_dssp             CCEEEEE-----CCTTSSHHHHHC
T ss_pred             CCEEEEE-----ccCCCCccccee
Confidence            3346788     999999999994

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=82.01  E-value=0.29  Score=39.00  Aligned_cols=19  Identities=32%  Similarity=0.496  Sum_probs=15.7

Q ss_pred             CeEEEEEeecccCCCCCChhHHHH
Q 025529           32 DKRLILIIVWLAGPPGSGKGTQSP   55 (251)
Q Consensus        32 ~~~i~i~ii~i~G~~gsGKST~a~   55 (251)
                      +-..+|+     |.+|+||||++.
T Consensus        14 ~~valff-----GLSGTGKTTLs~   32 (318)
T d1j3ba1          14 GDVAVFF-----GLSGTGKTTLST   32 (318)
T ss_dssp             CCEEEEE-----ECTTSCHHHHTC
T ss_pred             CCEEEEE-----ccCCCCcccccc
Confidence            3456888     999999999874

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.79  E-value=0.37  Score=37.68  Aligned_cols=24  Identities=13%  Similarity=0.160  Sum_probs=20.9

Q ss_pred             CCCeEEEEEeecccCCCCCChhHHHHHHH
Q 025529           30 KPDKRLILIIVWLAGPPGSGKGTQSPIIK   58 (251)
Q Consensus        30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La   58 (251)
                      -.-|.++++     |.-.|||||+...|.
T Consensus        24 ~~~P~ivvv-----G~~SsGKSsliNaLl   47 (299)
T d2akab1          24 LDLPQIAVV-----GGQSAGKSSVLENFV   47 (299)
T ss_dssp             CCCCEEEEE-----EBTTSCHHHHHHHHH
T ss_pred             CCCCeEEEE-----cCCCCCHHHHHHHHh
Confidence            345689999     999999999999995

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.74  E-value=0.59  Score=36.45  Aligned_cols=19  Identities=16%  Similarity=0.104  Sum_probs=16.1

Q ss_pred             cccCCCCCChhHHHHHHHH
Q 025529           41 WLAGPPGSGKGTQSPIIKD   59 (251)
Q Consensus        41 ~i~G~~gsGKST~a~~La~   59 (251)
                      .|.|+.++||||+...|..
T Consensus        36 si~G~~~sGKS~llN~l~~   54 (277)
T d1f5na2          36 AIVGLYRTGKSYLMNKLAG   54 (277)
T ss_dssp             EEEEBTTSSHHHHHHHHTT
T ss_pred             EEECCCCCCHHHHHHHHcC
Confidence            3459999999999998865