Citrus Sinensis ID: 025535

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
MESVSSSVLNKPLPSPSYSFAKSSNQRTGSLKFSESSRCAALGLRLRIHAQAREVPNEGEDDKPSDNGIGSAFGDAVSLSQGNTNQNPSGDKDADNLLKIETPHVVPHGSGTSGGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQVVIYFFLINFYTF
cccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccEEEEEEEcccccccccccEEEEEEEEEcccccEEEEEcccHHHHHHHcccccEEEEEEccccccccccEEEEEEEEEEccccHHHHHHHHHHccccc
ccccccccccccccccccccccccccccccccccccccccccHHHEHHHHHHHHcccccccccccccccccccccHcccccHHcccccccccccHHHHcccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccccccccccEEEEcHHHHHHHHHHccccEEEEEEccccccccccEEEEEEEEEEcccHHHHHHHHHHHHHHcc
mesvsssvlnkplpspsysfakssnqrtgslkfseSSRCAALGLRLRIHAQarevpnegeddkpsdngigsaFGDAVslsqgntnqnpsgdkdadnllkietphvvphgsgtsggtraglfrtpisggvqsatsahglprpaLAVRNLMEQARFAHLCTVMSrmhhrregypfgslvdfapdsmghpifsfsplaihtrnlladprctlvvqipgwsglsnarvtifgdifplpehqqVVIYFFLINFYTF
mesvsssvlnkplpspsysfakssnqrtgslkfSESSRCAALGLRLRIHAQarevpnegeddkpsdNGIGSAFGDAVSLSQGNTNQNPSGDKDADNLLKIETPhvvphgsgtsggTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQVVIYFFLINFYTF
MESVSSSVLNKPLPSPSYSFAKSSNQRTGSLKFSESSRCAALGLRLRIHAQAREVPNEGEDDKPSDNGIGSAFGDAVSLSQGNTNQNPSGDKDADNLLKIETPHVVPHGSGTSGGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQVVIYFFLINFYTF
****************************************ALGLRLRI********************************************************************************************PALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQVVIYFFLINFYT*
***********************************************************************************************************************************************AVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQVVIYFFLINFYTF
***********PLPSPSY******************SRCAALGLRLRIHAQARE**********SDNGIGSAFGDAVSLSQGNTNQNPSGDKDADNLLKIETPHVVPHGSGTSGGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQVVIYFFLINFYTF
****************SYSFA**SNQRTGSLKFSESSRCAALGLRLRIHAQAREVP***************************************************************LFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQVVIYFFLINFYTF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MESVSSSVLNKPLPSPSYSFAKSSNQRTGSLKFSESSRCAALGLRLRIHAQAREVPNEGEDDKPSDNGIGSAFGDAVSLSQGNTNQNPSGDKDADNLLKIETPHVVPHGSGTSGGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQVVIYFFLINFYTF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query251
255555606 397 conserved hypothetical protein [Ricinus 0.848 0.536 0.761 4e-91
224109984342 predicted protein [Populus trichocarpa] 0.768 0.564 0.788 1e-85
225443347 396 PREDICTED: uncharacterized protein LOC10 0.840 0.532 0.745 7e-84
224100515 415 predicted protein [Populus trichocarpa] 0.876 0.530 0.656 2e-83
225443345 389 PREDICTED: uncharacterized protein LOC10 0.816 0.526 0.721 4e-80
297852884 391 FMN binding protein [Arabidopsis lyrata 0.868 0.557 0.676 3e-78
449447992 380 PREDICTED: uncharacterized protein LOC10 0.896 0.592 0.636 1e-76
15217955 392 Pyridoxamine 5'-phosphate oxidase-like p 0.852 0.545 0.666 7e-76
18377805 392 unknown protein [Arabidopsis thaliana] 0.852 0.545 0.662 1e-75
356523451 531 PREDICTED: uncharacterized protein LOC10 0.749 0.354 0.709 1e-68
>gi|255555606|ref|XP_002518839.1| conserved hypothetical protein [Ricinus communis] gi|223542012|gb|EEF43557.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 166/218 (76%), Positives = 182/218 (83%), Gaps = 5/218 (2%)

Query: 22  KSSNQRTGSLKFSESSRCAALGLRLRIHAQAREVPN-EGEDDKPSDNGIGSAFGDAVSLS 80
           K  N+R GSLKF+E++    L    R H  A EV   EGED++P +NG G    D +S S
Sbjct: 36  KILNKRIGSLKFAETAGFHGL----RAHCLAHEVSGGEGEDERPLNNGFGLVSDDTLSFS 91

Query: 81  QGNTNQNPSGDKDADNLLKIETPHVVPHGSGTSGGTRAGLFRTPISGGVQSATSAHGLPR 140
           QGN  +N S  KDA+ ++K+ETP VVPHGS T GGTRAGLFRTPISGGVQSATSAHGLPR
Sbjct: 92  QGNIKRNESSKKDAEKIIKVETPLVVPHGSSTGGGTRAGLFRTPISGGVQSATSAHGLPR 151

Query: 141 PALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRN 200
           PALAVRNLMEQARFAHLCT+MSRMHHRREGYPFGSLVDFAPDS+GHPIFSFSPLAIHTRN
Sbjct: 152 PALAVRNLMEQARFAHLCTIMSRMHHRREGYPFGSLVDFAPDSVGHPIFSFSPLAIHTRN 211

Query: 201 LLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQ 238
           LLADPRCTLVVQIPGWSGLSNARVTIFGD+FPLPE QQ
Sbjct: 212 LLADPRCTLVVQIPGWSGLSNARVTIFGDVFPLPEDQQ 249

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224109984|ref|XP_002315376.1| predicted protein [Populus trichocarpa] gi|222864416|gb|EEF01547.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225443347|ref|XP_002264902.1| PREDICTED: uncharacterized protein LOC100253108 isoform 1 [Vitis vinifera] gi|297735773|emb|CBI18460.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224100515|ref|XP_002311906.1| predicted protein [Populus trichocarpa] gi|222851726|gb|EEE89273.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225443345|ref|XP_002264942.1| PREDICTED: uncharacterized protein LOC100253108 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297852884|ref|XP_002894323.1| FMN binding protein [Arabidopsis lyrata subsp. lyrata] gi|297340165|gb|EFH70582.1| FMN binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449447992|ref|XP_004141750.1| PREDICTED: uncharacterized protein LOC101216483 [Cucumis sativus] gi|449491787|ref|XP_004159003.1| PREDICTED: uncharacterized protein LOC101229143 [Cucumis sativus] Back     alignment and taxonomy information
>gi|15217955|ref|NP_175567.1| Pyridoxamine 5'-phosphate oxidase-like protein [Arabidopsis thaliana] gi|12325371|gb|AAG52630.1|AC024261_17 unknown protein; 18888-20847 [Arabidopsis thaliana] gi|23297513|gb|AAN12985.1| unknown protein [Arabidopsis thaliana] gi|332194562|gb|AEE32683.1| Pyridoxamine 5'-phosphate oxidase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18377805|gb|AAL67052.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356523451|ref|XP_003530352.1| PREDICTED: uncharacterized protein LOC100775527 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query251
TAIR|locus:2017637 392 AT1G51560 [Arabidopsis thalian 0.864 0.553 0.663 2e-72
TAIR|locus:2093005 387 AT3G21140 [Arabidopsis thalian 0.884 0.573 0.612 2.8e-66
TAIR|locus:2079394 321 AT3G03890 [Arabidopsis thalian 0.330 0.258 0.395 2.8e-11
UNIPROTKB|Q60C03 238 MCA0309 "Putative uncharacteri 0.294 0.310 0.337 2.8e-05
TAIR|locus:2017637 AT1G51560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 154/232 (66%), Positives = 171/232 (73%)

Query:    10 NKP-LPSPSYSFAKSSNQRTGSLKFSESSRCAALGLRLRIHA--QAREVPNEGEDDKPSD 66
             N P L S S     S  ++   L+  E S     GL LR+HA     E  +E ED     
Sbjct:    25 NPPALSSSSCWLCNSQAKQIIKLRIREGSN---QGL-LRVHALFNNEEASSESEDK---- 76

Query:    67 NGIGSAFGDAVSLSQGNTNQNPSGDKDADNLLKIETPHVVPHGSGTSGGTRAGLFRTPIS 126
             NG G    D  SL Q     N SG+KD++N++ +ET   VPHG    GGTRAGLFRTPIS
Sbjct:    77 NGFGLLPADIFSLPQEKFGSNVSGEKDSENIIDVETSLAVPHG----GGTRAGLFRTPIS 132

Query:   127 GGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGH 186
             GGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMS+MHHRREGYPFGSLVDFAPD MGH
Sbjct:   133 GGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSKMHHRREGYPFGSLVDFAPDPMGH 192

Query:   187 PIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQ 238
             PIFSFSPLAIHTRN+LA+PRCTLVVQIPGWS LSNARVT+FGD++PLPE QQ
Sbjct:   193 PIFSFSPLAIHTRNILAEPRCTLVVQIPGWSCLSNARVTLFGDVYPLPEEQQ 244
GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0010181 "FMN binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2093005 AT3G21140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079394 AT3G03890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q60C03 MCA0309 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.3124.1
hypothetical protein (342 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query251
pfam13883167 pfam13883, Pyrid_oxidase_2, Pyridoxamine 5'-phosph 7e-09
pfam0124388 pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosph 3e-06
COG0748 245 COG0748, HugZ, Putative heme iron utilization prot 8e-04
>gnl|CDD|222433 pfam13883, Pyrid_oxidase_2, Pyridoxamine 5'-phosphate oxidase Back     alignment and domain information 
 Score = 53.4 bits (129), Expect = 7e-09
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 17/109 (15%)

Query: 141 PALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLV---DFAP-DSMGHPIFSFSPLAI 196
             +A R L+ +A +  L T+ +  H    G PFG++V   D  P DS G+P F  + L  
Sbjct: 7   AKVA-RTLVHRADWGALSTIST--HKDVGGAPFGNVVSVSDGPPGDSTGNPYFLLTDLDS 63

Query: 197 HTRNLLADPRCTLVVQIPG----------WSGLSNARVTIFGDIFPLPE 235
             +NL  +PR +L +                  +  R+T+ G +  +P 
Sbjct: 64  TVQNLQKNPRASLTLSEAQTGFCKKHGVDPEDPTCPRITLTGKLKKVPS 112

Length = 167
>gnl|CDD|216385 pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosphate oxidase Back     alignment and domain information
>gnl|CDD|223819 COG0748, HugZ, Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 251
PF13883170 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase 99.85
PF0124389 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase 99.59
KOG3374210 consensus Cellular repressor of transcription [Tra 99.5
TIGR03668141 Rv0121_F420 PPOX class probable F420-dependent enz 99.48
TIGR03666132 Rv2061_F420 PPOX class probable F420-dependent enz 99.38
TIGR03667130 Rv3369 PPOX class probable F420-dependent enzyme, 99.36
PRK03467144 hypothetical protein; Provisional 99.29
TIGR03618117 Rv1155_F420 PPOX class probable F420-dependent enz 99.22
COG3467166 Predicted flavin-nucleotide-binding protein [Gener 98.9
PF12900143 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; I 98.9
PRK05679195 pyridoxamine 5'-phosphate oxidase; Provisional 98.86
COG0748 245 HugZ Putative heme iron utilization protein [Inorg 98.82
COG3871145 Uncharacterized stress protein (general stress pro 98.34
PRK06733151 hypothetical protein; Provisional 98.33
TIGR00558217 pdxH pyridoxamine-phosphate oxidase. This model is 98.32
COG0748245 HugZ Putative heme iron utilization protein [Inorg 98.03
PLN03049462 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Pr 97.99
COG0259214 PdxH Pyridoxamine-phosphate oxidase [Coenzyme meta 97.95
COG3787145 Uncharacterized protein conserved in bacteria [Fun 97.85
PLN02918544 pyridoxine (pyridoxamine) 5'-phosphate oxidase 97.37
PF04299169 FMN_bind_2: Putative FMN-binding domain; InterPro: 97.23
TIGR00026113 hi_GC_TIGR00026 deazaflavin-dependent nitroreducta 97.18
COG5015132 Uncharacterized conserved protein [Function unknow 97.14
KOG2586228 consensus Pyridoxamine-phosphate oxidase [Coenzyme 96.94
PF04075132 DUF385: Domain of unknown function (DUF385) ; Inte 96.66
PF12766100 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase 95.62
COG2808209 PaiB Transcriptional regulator [Transcription] 95.4
COG3576173 Predicted flavin-nucleotide-binding protein struct 91.82
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C Back     alignment and domain information 
Probab=99.85  E-value=4e-21  Score=163.72  Aligned_cols=103  Identities=41%  Similarity=0.643  Sum_probs=75.1

Q ss_pred             CCCCcHHHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeE----ECCCCCeEEEecCCchhhhhhhcCCceEEEEE
Q 025535          137 GLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFA----PDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQ  212 (251)
Q Consensus       137 ~~~~~ae~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa----~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~  212 (251)
                      +.+..++.||+|++.+++|+|+|+++.  ++.+|+|++++|.|+    .+.+|+|||++|+++.|++||++||||||+|.
T Consensus         2 ~~~~aA~~AR~Ll~~~~~g~LsTls~~--~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~   79 (170)
T PF13883_consen    2 TREEAAELARTLLHQSRWGTLSTLSTQ--KDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTIS   79 (170)
T ss_dssp             -TT-HHHHHHHHHHH-SEEEEEEE--S--GGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEE
T ss_pred             ChHHHHHHHHHHHhhCCEEEEEeccCC--CCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEe
Confidence            346788999999999999999999851  246999999999999    78889999999999999999999999999999


Q ss_pred             cCCC--------CC--ccccEEEEEEEEEeCCCchHHHH
Q 025535          213 IPGW--------SG--LSNARVTIFGDIFPLPEHQQVVI  241 (251)
Q Consensus       213 e~e~--------dp--~a~aRVTL~G~a~~Vedeeee~a  241 (251)
                      +.+.        |+  ++++||||+|++++|++++.+.+
T Consensus        80 ~~~~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a  118 (170)
T PF13883_consen   80 EPQGGDCDNSGVDPEDPACPRVTLTGRAEPVPPDEAAAA  118 (170)
T ss_dssp             GGGSSHHHHHT--TTSTTS-EEEEEEEEEE--TTTHHHH
T ss_pred             cCCCCcccccCCCCCCCCCcEEEEEEEEEEcCchHHHHH
Confidence            9874        23  37999999999999997764444

>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1 Back     alignment and domain information
>KOG3374 consensus Cellular repressor of transcription [Transcription] Back     alignment and domain information
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family Back     alignment and domain information
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family Back     alignment and domain information
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family Back     alignment and domain information
>PRK03467 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme Back     alignment and domain information
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP) Back     alignment and domain information
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional Back     alignment and domain information
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only] Back     alignment and domain information
>PRK06733 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00558 pdxH pyridoxamine-phosphate oxidase Back     alignment and domain information
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional Back     alignment and domain information
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism] Back     alignment and domain information
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase Back     alignment and domain information
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [] Back     alignment and domain information
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein Back     alignment and domain information
>COG5015 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces Back     alignment and domain information
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E Back     alignment and domain information
>COG2808 PaiB Transcriptional regulator [Transcription] Back     alignment and domain information
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query251
2arz_A 247 Crystal Structure Of Protein Of Unknown Function Fr 4e-07
>pdb|2ARZ|A Chain A, Crystal Structure Of Protein Of Unknown Function From Pseudomonas Aeruginosa Length = 247 Back     alignment and structure 
Iteration: 1

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 159 TVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVV 211
            V+S    +  G+PFGS+V +  D+ G P+   S +A HT NL ADPRC+++V
Sbjct: 22  AVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLV 74

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query251
3dnh_A 258 Uncharacterized protein ATU2129; APC6114, agrobact 3e-21
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 4e-19
2arz_A 247 Hypothetical protein PA4388; hypothetical protein, 1e-17
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 2e-15
3swj_A251 CHUZ, putative uncharacterized protein; heme oxyge 1e-07
3f7e_A131 Pyridoxamine 5'-phosphate oxidase-related, FMN- bi 1e-07
3gas_A259 Heme oxygenase; FMN-binding split barrel, oxidored 5e-07
2aq6_A147 Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos 2e-06
1rfe_A162 Hypothetical protein RV2991; structural genomics, 1e-05
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Length = 258 Back     alignment and structure
 Score = 88.8 bits (219), Expect = 3e-21
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 6/101 (5%)

Query: 139 PRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHT 198
                  R+++  +R A L T+         GYP+ +  +   +  G P F  + L +H 
Sbjct: 26  FEAVRVARDVLHTSRTAALATL-----DPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHA 80

Query: 199 RNLLADPRCTLVVQIPGWSG-LSNARVTIFGDIFPLPEHQQ 238
           RN+  D R ++ +   G    L+  R+T+ G    +   + 
Sbjct: 81  RNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEV 121
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Length = 184 Back     alignment and structure
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Length = 247 Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Length = 157 Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Length = 251 Back     alignment and structure
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Length = 131 Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Length = 259 Back     alignment and structure
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A* Length = 147 Back     alignment and structure
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Length = 162 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query251
3tgv_A148 Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} 99.87
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 99.85
3dnh_A 258 Uncharacterized protein ATU2129; APC6114, agrobact 99.84
3gas_A259 Heme oxygenase; FMN-binding split barrel, oxidored 99.81
3swj_A251 CHUZ, putative uncharacterized protein; heme oxyge 99.79
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 99.78
2arz_A 247 Hypothetical protein PA4388; hypothetical protein, 99.78
1rfe_A162 Hypothetical protein RV2991; structural genomics, 99.62
3f7e_A131 Pyridoxamine 5'-phosphate oxidase-related, FMN- bi 99.53
2i02_A148 General stress protein of COG3871; pyridoxamine 5' 99.52
2iab_A155 Hypothetical protein; NP_828636.1, structural geno 99.52
3ec6_A139 General stress protein 26; alpha-beta structure, s 99.5
2asf_A137 Hypothetical protein RV2074; H37RV, structural gen 99.5
3db0_A128 LIN2891 protein; putative pyridoxamine 5'-phosphat 99.49
2fhq_A141 Putative general stress protein; alpha-beta struct 99.49
2re7_A134 Uncharacterized protein; general stress protein CO 99.49
3u5w_A148 Putative uncharacterized protein; ssgcid, seattle 99.47
2aq6_A147 Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos 99.46
2hq7_A146 Protein, related to general stress protein 26(GS2 99.43
2hti_A185 BH0577 protein; structural genomics, joint center 99.43
2hq9_A149 MLL6688 protein; structural genomics, joint center 99.42
2hhz_A150 Pyridoxamine 5'-phosphate oxidase-related; structu 99.4
2fg9_A178 5-nitroimidazole antibiotic resistance protein; ST 99.4
3cp3_A148 Uncharacterized protein; alpha-beta fold, structur 99.38
3fkh_A138 Putative pyridoxamine 5'-phosphate oxidase; NP_601 99.37
2htd_A140 Predicted flavin-nucleotide-binding protein from f 99.36
2q9k_A151 Uncharacterized protein; split barrel-like fold, s 99.35
2ig6_A150 NIMC/NIMA family protein; structural genomics, joi 99.33
3dmb_A147 Putative general stress protein 26 with A PNP-OXI 99.29
2fur_A209 Hypothetical protein; structural genomics, joint c 99.28
2vpa_A216 NIMA-related protein; cofactor, atomic resolution, 99.25
2qea_A160 Putative general stress protein 26; structural gen 99.19
3u35_A182 General stress protein; PNP-oxidase like fold, FMN 99.18
1dnl_A199 Pyridoxine 5'-phosphate oxidase; beta barrel, prot 98.88
3ba3_A145 Protein LP_0091, pyridoxamine 5'-phosphate oxidase 98.87
2ol5_A202 PAI 2 protein; structural genomics, PSI-2, protein 98.83
1ty9_A222 Phenazine biosynthesis protein PHZG; chorismate, o 98.75
1nrg_A261 Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore 98.7
1ci0_A228 Protein (PNP oxidase); B6 metabolism, structural g 98.68
2i51_A195 Uncharacterized conserved protein of COG5135; pyri 98.63
2ou5_A175 Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; 98.58
2a2j_A246 Pyridoxamine 5'-phosphate oxidase; beta barrel, st 98.49
3in6_A148 FMN-binding protein; structural genomics, joint ce 98.09
3a6r_A122 FMN-binding protein; electron transport, flavoprot 97.94
3r5l_A122 Deazaflavin-dependent nitroreductase; PA-824, spli 97.81
3h96_A143 F420-H2 dependent reductase A; pnpox, flavin, afla 96.61
3r5y_A147 Putative uncharacterized protein; PA-824, nitroimi 96.61
3r5z_A145 Putative uncharacterized protein; split barrel-lik 96.33
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} Back     alignment and structure
Probab=99.87  E-value=8.9e-22  Score=160.96  Aligned_cols=91  Identities=18%  Similarity=0.219  Sum_probs=82.7

Q ss_pred             HHHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEECCCCCeEEEecCCchhhhhhhcCCceEEEEEcCCC---CC
Q 025535          142 ALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGW---SG  218 (251)
Q Consensus       142 ae~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~---dp  218 (251)
                      .+++++||+++++++|||++      .||+|++|+|||+.|+ |.+||++|.+++|++||++||||||+|.+++.   ++
T Consensus         4 ~~ei~~fl~~~~~~~LaT~~------~~G~P~~s~v~~~~~~-~~~~~~~s~~~~~~~nl~~~prvsl~v~~~~~~~~~~   76 (148)
T 3tgv_A            4 EPEIKEFRQERKTLQLATVD------AQGRPNVSYAPFVQNQ-EGYFVLISHIARHARNLEVNPQVSIMMIEDETEAKQL   76 (148)
T ss_dssp             HHHHHHHHHHCCEEEEEEEC------TTCCEEEEEEEEEEET-TEEEEEEETTSHHHHHHHHSCEEEEEEECCGGGCSCG
T ss_pred             hHHHHHHHhhCCEEEEEEEC------CCCCEEEEEEEEEEEC-CEEEEEECCccHHHHHHHhCCCeEEEEecCcccccCc
Confidence            46899999999999999998      5999999999999984 67999999999999999999999999998863   57


Q ss_pred             ccccEEEEEEEEEeCCCchHH
Q 025535          219 LSNARVTIFGDIFPLPEHQQV  239 (251)
Q Consensus       219 ~a~aRVTL~G~a~~Vedeeee  239 (251)
                      ++.+|||+.|+++.+++++++
T Consensus        77 ~~~~rltl~G~a~~v~~~~~~   97 (148)
T 3tgv_A           77 FARKRLTFDAVASMVERDSEL   97 (148)
T ss_dssp             GGCCEEEEEEEEEEECTTSHH
T ss_pred             ccceEEEEeeeEEEcCCCcHH
Confidence            788999999999999887654
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Back     alignment and structure
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Back     alignment and structure
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Back     alignment and structure
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Back     alignment and structure
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1 Back     alignment and structure
>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis} Back     alignment and structure
>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0 Back     alignment and structure
>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua} Back     alignment and structure
>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus} Back     alignment and structure
>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural genomics center for infectious DI FMN-binding protein; 2.05A {Brucella melitensis biovar abortus} SCOP: b.45.1.0 PDB: 3u0i_A Back     alignment and structure
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A* Back     alignment and structure
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1 Back     alignment and structure
>2hti_A BH0577 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, FMN-binding protein; HET: FAD; 2.50A {Bacillus halodurans} SCOP: b.45.1.1 Back     alignment and structure
>2hq9_A MLL6688 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FAD; 1.95A {Mesorhizobium loti} SCOP: b.45.1.1 Back     alignment and structure
>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis} Back     alignment and structure
>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: FAD; 2.20A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} Back     alignment and structure
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum} Back     alignment and structure
>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>2fur_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP: b.45.1.1 Back     alignment and structure
>2vpa_A NIMA-related protein; cofactor, atomic resolution, antibiotic resistance, oxidoreductase; 1.2A {Deinococcus radiodurans} SCOP: b.45.1.1 PDB: 1w3p_A 1w3q_A 1w3r_A* 1w3o_A 2x1k_A 2x1j_A Back     alignment and structure
>2qea_A Putative general stress protein 26; structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.46A {Jannaschia SP} Back     alignment and structure
>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI; HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A* Back     alignment and structure
>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A* Back     alignment and structure
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>2ol5_A PAI 2 protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Geobacillus stearothermophilus} Back     alignment and structure
>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A* Back     alignment and structure
>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A* Back     alignment and structure
>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1 Back     alignment and structure
>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme} Back     alignment and structure
>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP} Back     alignment and structure
>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>3in6_A FMN-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FMN; 2.12A {Syntrophomonas wolfei subsp} Back     alignment and structure
>3a6r_A FMN-binding protein; electron transport, flavoprotein; HET: FMN; 1.20A {Desulfovibrio vulgaris} PDB: 1axj_A* 1flm_A* 3awh_A* 3amf_A* 3a6q_A* 1wll_A* 3a20_A* 1wli_A* 1wlk_A* 2e83_A* Back     alignment and structure
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A* Back     alignment and structure
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str} Back     alignment and structure
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica} Back     alignment and structure
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 251
d1xhna1170 b.45.1.1 (A:13-182) Cellular repressor of E1A-stim 5e-22
d2arza1 238 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Ps 5e-21
d1vl7a_135 b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanob 4e-13
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Cellular repressor of E1A-stimulated genes CREG1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (216), Expect = 5e-22
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 16/108 (14%)

Query: 142 ALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAP----DSMGHPIFSFSPLAIH 197
           A   R +   + +  L T+ +       G PF  ++  +        G P F  SPL + 
Sbjct: 8   ARVARFVTHVSDWGALATIST--LEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSPLQLS 65

Query: 198 TRNLLADPRCTLVVQIPGWSGLSN----------ARVTIFGDIFPLPE 235
             NL  +P  TL + +   +                + + G +  + E
Sbjct: 66  VSNLQENPYATLTMTLAQTNFCKKHGFDPQSPLCVHIMLSGTVTKVNE 113
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Length = 238 Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Length = 135 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query251
d1xhna1170 Cellular repressor of E1A-stimulated genes CREG1 { 99.89
d2arza1 238 Hypothetical protein PA4388 {Pseudomonas aeruginos 99.87
d1vl7a_135 Hypothetical protein Alr5027 {Cyanobacterium (Nost 99.85
d1rfea_160 Hypothetical protein Rv2991 {Mycobacterium tubercu 99.61
d1w9aa_142 Hypothetical protein Rv1155 {Mycobacterium tubercu 99.56
d2asfa1125 Hypothetical protein Rv2074 {Mycobacterium tubercu 99.56
d2hq9a1148 Hypothetical protein Mll6688 {Mesorhizobium loti [ 99.52
d2i02a1143 General stress protein 26 {Nostoc punctiforme pcc 99.48
d2fhqa1135 Putative general stress protein BT1439 {Bacteroide 99.45
d2fg9a1157 5-nitroimidazole resistance protein BT3078 {Bacter 99.44
d2hq7a1141 Hypotheical protein CAC3491 {Clostridium acetobuty 99.43
d2htia1156 Hypothetical protein BH0577 {Bacillus halodurans [ 99.38
d1flma_122 FMN-binding protein {Desulfovibrio vulgaris, strai 99.24
d2fura1193 Hypothetical protein Ta1372 {Thermoplasma acidophi 99.03
d2vpaa1194 NimA-related protein DR0842 {Deinococcus radiodura 99.0
d1t9ma_204 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseu 97.9
d1dnla_199 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Esch 97.85
d1nrga_213 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Huma 97.83
d2a2ja1201 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Myco 97.76
d1ci0a_205 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Bake 97.63
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Cellular repressor of E1A-stimulated genes CREG1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.5e-23  Score=173.26  Aligned_cols=113  Identities=19%  Similarity=0.296  Sum_probs=94.5

Q ss_pred             CCCCcHHHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeE----ECCCCCeEEEecCCchhhhhhhcCCceEEEEE
Q 025535          137 GLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFA----PDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQ  212 (251)
Q Consensus       137 ~~~~~ae~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa----~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~  212 (251)
                      +.+..++.||.|++++++|+|||++.+  ++.+|+||+|+|+|+    .|.+|.||||+|+++.|++||++||||||+|.
T Consensus         3 ~~~~~a~~AR~L~~~~~~g~LsTiS~~--~~~~G~P~~s~v~~adg~~~~~~G~P~~llS~la~ht~Nl~~~~~vSL~v~   80 (170)
T d1xhna1           3 PREDAARVARFVTHVSDWGALATISTL--EAVRGRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSVSNLQENPYATLTMT   80 (170)
T ss_dssp             CTTCHHHHHHHHHHHCSEEEEEEECCC--GGGTTCEEEEEEECBSCSTTCCCSCCEEEECTTSHHHHHHHHCCEEEEEEE
T ss_pred             CcHHHHHHHHHHHHhCCEEEEEEcccC--CCCCCccceeEEEEeccCCCCCCCCEEEEEcChhHhHHHHhhCCCeEEEEE
Confidence            456788999999999999999999743  235899999999998    45679999999999999999999999999998


Q ss_pred             cCCC--------CC--ccccEEEEEEEEEeCCCchHHHH--HHh--------ccccCCC
Q 025535          213 IPGW--------SG--LSNARVTIFGDIFPLPEHQQVVI--YFF--------LINFYTF  251 (251)
Q Consensus       213 e~e~--------dp--~a~aRVTL~G~a~~Vedeeee~a--r~~--------yi~f~~f  251 (251)
                      +.+.        |+  ..++||||+|++++|+++|.+.+  +|+        |++|.||
T Consensus        81 ~~~~~~~~~~~~dp~~p~~aRlTl~G~~~~v~~~e~~~a~~~yl~rHP~a~~w~~~~df  139 (170)
T d1xhna1          81 LAQTNFCKKHGFDPQSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNW  139 (170)
T ss_dssp             GGGTTHHHHHTCCTTSTTSCEEEEEEEEEECCGGGHHHHHHHHHHHCGGGGGSCGGGCC
T ss_pred             ecCCCcccccCCCccCCCCcEEEEEEEEEECCcHHHHHHHHHHHHHHHHHHhCcccCCe
Confidence            8762        32  46789999999999988866544  442        6777776
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Back     information, alignment and structure
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Back     information, alignment and structure
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2htia1 b.45.1.1 (A:10-165) Hypothetical protein BH0577 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1flma_ b.45.1.1 (A:) FMN-binding protein {Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]} Back     information, alignment and structure
>d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2vpaa1 b.45.1.1 (A:2-195) NimA-related protein DR0842 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure