Citrus Sinensis ID: 025537

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHcccccccccccccccccHHHHHHccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccEEEcHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHccccccccHHHHHHHcccHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHccc
Coil and Loop (DISEMBL)
mlldllsgkhippshaldliRSKNFLLLMDSAleghfsndegTELVRLASRCLQSEARERPNAKSLVISLMSLqkeaevpsyVLLGIqhetapstkplsltplgeacsrlDLTAIHEILEgmgykddegiANELSFQMWTSQMQETlnskkhgdtafrakdfstAIDCYtqfidggtmvspTVYARRCLSYLMNDMPQEALGDAmqaqvvspdwpTALYLQAACLFSLGMEndaretlkdgtnleakknkn
Flexible Loop (DISEMBL)
mlldllsgkhippshalDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQsearerpnaKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQfidggtmvSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARetlkdgtnleakknkn
Low Complexity Region (SEG)
MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN
Disordered region (IsUnstruct)
**************HALDLIRSKNFLLLMDSALEGHFSN***TELVRLA****************LVISLMSLQKEAEVPSYVLLGIQHET******LSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTS*************TAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM*********************
Disordered Region (DISOPRED)
MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLL**************************LTAIHEI******************************SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDG***E******
Disordered Region (DISEMBL)
MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN
Disordered Region (DISPRO)
MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLE******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q9FHD7	487	Probable serine/threonine	no	no	0.976	0.503	0.658	2e-91
Q944A7	512	Probable serine/threonine	no	no	0.992	0.486	0.625	1e-86
Q7XJT7	465	Probable inactive recepto	no	no	0.984	0.531	0.483	7e-64
Q54DA8	564	Protein STIP1 homolog OS=	yes	no	0.390	0.173	0.285	1e-06
Q9USI5	591	Heat shock protein sti1 h	yes	no	0.382	0.162	0.343	8e-06
Q96AY4	2481	Tetratricopeptide repeat	yes	no	0.370	0.037	0.29	0.0002

>sp|Q9FHD7|Y5126_ARATH Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1

 Score =  335 bits (859), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 164/249 (65%), Positives = 197/249 (79%), Gaps = 4/249 (1%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           +LLDLLSGKHIPPSHALDLIR +N  +LMDS LEG FS+D+GTEL+RLASRCLQ E RER
Sbjct: 241 LLLDLLSGKHIPPSHALDLIRDRNIQMLMDSGLEGQFSSDDGTELIRLASRCLQYEPRER 300

Query: 61  PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
           PN KSLV +++ LQK+ E+ S+ LLG+ +    S    +L+PLGEAC R DLTAIHEI+E
Sbjct: 301 PNPKSLVSAMIPLQKDLEIASHQLLGVPN----SATTTALSPLGEACLRSDLTAIHEIIE 356

Query: 121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
            +GYKDDEG   ELSFQMWT QMQ+TL  KK GD+AFR KDF+ AI+CY+QFI+ GTM S
Sbjct: 357 KLGYKDDEGATTELSFQMWTDQMQDTLVFKKKGDSAFRHKDFAKAIECYSQFIEVGTMGS 416

Query: 181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
           PTV+AR+ L YLMNDMP+EAL +AMQAQV+SP W  A YLQA  L +LG EN+A   LKD
Sbjct: 417 PTVHARQSLCYLMNDMPREALNNAMQAQVISPAWHIASYLQAVALSALGQENEAHTALKD 476

Query: 241 GTNLEAKKN 249
           G  LE+K+N
Sbjct: 477 GAMLESKRN 485

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q944A7|Y4523_ARATH Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1

 Score =  319 bits (818), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 157/251 (62%), Positives = 188/251 (74%), Gaps = 2/251 (0%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           +LLDLLSGKHIPPSHALD+IR KN +LLMDS LEG FS +E T +V LAS+CLQ E RER
Sbjct: 258 VLLDLLSGKHIPPSHALDMIRGKNIILLMDSHLEGKFSTEEATVVVELASQCLQYEPRER 317

Query: 61  PNAKSLVISLMSLQKEAEVPSYVLLGIQ-HETAPSTKPLSLTPLGEACSRLDLTAIHEIL 119
           PN K LV +L  LQ +++VPSYV+LGI+  E APST    L+PLGEACSR+DLTAIH+IL
Sbjct: 318 PNTKDLVATLAPLQTKSDVPSYVMLGIKKQEEAPSTPQRPLSPLGEACSRMDLTAIHQIL 377

Query: 120 EGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV 179
               Y+DDEG  NELSFQ WT QM++ L+++K GD +FR KDF TAIDCY+QFID GTMV
Sbjct: 378 VMTHYRDDEG-TNELSFQEWTQQMKDMLDARKRGDQSFREKDFKTAIDCYSQFIDVGTMV 436

Query: 180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK 239
           SPTV+ RR L YL+ D P  AL DAMQAQ V PDWPTA Y+Q+  L  L M  DA + L 
Sbjct: 437 SPTVFGRRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVALAKLNMNTDAADMLN 496

Query: 240 DGTNLEAKKNK 250
           +   LE K+ +
Sbjct: 497 EAAQLEEKRQR 507

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q7XJT7|SSP_ARATH Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1

 Score =  243 bits (621), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 120/248 (48%), Positives = 167/248 (67%), Gaps = 1/248 (0%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           +L++LLSGK IPPSHA ++I  KN   LMD  L+G FS DE   + +LAS+CL+ E +E 
Sbjct: 219 VLVNLLSGKQIPPSHAPEMIHRKNVFKLMDPYLKGKFSIDEANVVYKLASQCLKYEGQES 278

Query: 61  PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
           PN K +V +L +LQ   E PSY ++ + ++   ++   +L+PLGEAC R+DL +IH IL 
Sbjct: 279 PNTKEIVATLETLQTRTEAPSYEVVEMTNQEKDASSSSNLSPLGEACLRMDLASIHSILV 338

Query: 121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
             GY DD+ I  ELSF+ W  +++E  + +++GD AF  +DF TAI CY+QF++  ++V 
Sbjct: 339 LAGYDDDKDII-ELSFEEWIQEVKELQDVRRNGDRAFVEQDFKTAIACYSQFVEERSLVY 397

Query: 181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
           P+VYARR LSYL  D P++AL D M AQ V PDWPTA YLQ+  L  L M  D+ +TLK+
Sbjct: 398 PSVYARRSLSYLFCDEPEKALLDGMHAQGVFPDWPTAFYLQSVALAKLDMNTDSADTLKE 457

Query: 241 GTNLEAKK 248
              LE KK
Sbjct: 458 AALLEVKK 465

Probable inactive protein kinase that activates the YODA MAP kinase cascade, regulating the asymmetric first division, and thus embryo polarity. Acts as an adapter at the plasma membrane, possibly recruiting an activator.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54DA8|STIP1_DICDI Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEA 200
           Q+    K  G+ AF +KD+++A+ C+ Q I+    + P+   +Y+ R  S L  D  ++A
Sbjct: 6   QKATEFKNQGNAAFSSKDYNSAVKCFDQAIE----LDPSNHILYSNRSASLLALDKNEDA 61

Query: 201 LGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLE 245
           L DA +A  + PDW      +   L+ LG   +A ++ + G  ++
Sbjct: 62  LTDAKKAIELKPDWSKGYLRETNALYKLGRFEEAEKSAEAGLKID 106

Dictyostelium discoideum (taxid: 44689)

>sp|Q9USI5|STI1_SCHPO Heat shock protein sti1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sti1 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALG 202
           M E L +K  G+ AF  KD+ TAID +TQ I G    +  +Y+ R   Y       +AL 
Sbjct: 1   MAEELKAK--GNAAFSKKDYKTAIDYFTQAI-GLDERNHILYSNRSACYASEKDYADALK 57

Query: 203 DAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDG 241
           DA +   + PDW      + A L  LG  + AR   ++G
Sbjct: 58  DATKCTELKPDWAKGWSRKGAALHGLGDLDAARSAYEEG 96

May play a role in mediating the heat shock response of some HSP70 genes.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP---TVYARRCLSYLMNDMPQEAL 201
           E +   +  + A    DF TAI  Y + +     V P    +Y+ R  +Y+      +AL
Sbjct: 57  EFVEKVRQSNQACHDGDFHTAIVLYNEAL----AVDPQNCILYSNRSAAYMKIQQYDKAL 112

Query: 202 GDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDG 241
            DA++A++++P WP A + Q   L  LG   DA      G
Sbjct: 113 DDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASG 152

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
356504321	491	PREDICTED: probable serine/threonine-pro	1.0	0.511	0.888	1e-129
224087605	491	predicted protein [Populus trichocarpa]	1.0	0.511	0.884	1e-129
224138934	491	predicted protein [Populus trichocarpa]	1.0	0.511	0.884	1e-129
225440554	491	PREDICTED: probable serine/threonine-pro	1.0	0.511	0.864	1e-127
255573947	491	receptor protein kinase, putative [Ricin	1.0	0.511	0.872	1e-126
449506466	491	PREDICTED: probable serine/threonine-pro	1.0	0.511	0.852	1e-124
356496122	490	PREDICTED: LOW QUALITY PROTEIN: probable	1.0	0.512	0.856	1e-123
449460335	491	PREDICTED: probable serine/threonine-pro	1.0	0.511	0.848	1e-123
297745973	490	unnamed protein product [Vitis vinifera]	0.996	0.510	0.84	1e-122
359478579	512	PREDICTED: probable serine/threonine-pro	0.996	0.488	0.84	1e-122

>gi|356504321|ref|XP_003520945.1| PREDICTED: probable serine/threonine-protein kinase At5g41260-like [Glycine max]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/251 (88%), Positives = 235/251 (93%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           +LLDLLSGKHIPPSHALDLIR KNFL+LMDSALEGHFS D+GTELVRLASRCLQ EARER
Sbjct: 241 LLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARER 300

Query: 61  PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
           PNAKSLV SL+SLQKE EVPSYVL+G+Q ETA S K LSLTP GEAC RLDLTAIHEILE
Sbjct: 301 PNAKSLVASLLSLQKETEVPSYVLMGLQQETASSAKQLSLTPFGEACLRLDLTAIHEILE 360

Query: 121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
             GYKDDEGIANELSFQ+WTSQMQETLN KKHGDTAFRAKDF TAIDCYTQFIDGGTMVS
Sbjct: 361 KTGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFVTAIDCYTQFIDGGTMVS 420

Query: 181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
           PTVYARRCLSYLMNDM QEALGDAMQAQVVSP+WPT+LYLQAACLFSLGMENDA+ETLKD
Sbjct: 421 PTVYARRCLSYLMNDMAQEALGDAMQAQVVSPEWPTSLYLQAACLFSLGMENDAQETLKD 480

Query: 241 GTNLEAKKNKN 251
           GTN+EA+KNKN
Sbjct: 481 GTNMEARKNKN 491

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087605|ref|XP_002308195.1| predicted protein [Populus trichocarpa] gi|222854171|gb|EEE91718.1| predicted protein [Populus trichocarpa]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/251 (88%), Positives = 237/251 (94%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           +LLDLLSGKHIPPSHALDLIR KNFL+LMDSALEGHFS D+GTELVRLASRCLQ EARER
Sbjct: 241 LLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARER 300

Query: 61  PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
           PNAKSLV +L+SLQKE EVPSYVL+GI+ ETA ST+PLSLTP GEAC R DLTAIHEILE
Sbjct: 301 PNAKSLVTALLSLQKETEVPSYVLMGIRQETASSTQPLSLTPFGEACLRTDLTAIHEILE 360

Query: 121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
            +GYKDDEGIANELSFQMWT+QMQETLNSKKHGDTAFRAKDF+TAIDCYTQFIDGGTMVS
Sbjct: 361 KIGYKDDEGIANELSFQMWTNQMQETLNSKKHGDTAFRAKDFATAIDCYTQFIDGGTMVS 420

Query: 181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
           PTVYARRCLSYLM+DMPQEALGDAMQAQVVSP+W TA YLQAACLFSLGME DA+ETLKD
Sbjct: 421 PTVYARRCLSYLMSDMPQEALGDAMQAQVVSPEWSTASYLQAACLFSLGMETDAQETLKD 480

Query: 241 GTNLEAKKNKN 251
           GTNLEAK+NKN
Sbjct: 481 GTNLEAKRNKN 491

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138934|ref|XP_002322938.1| predicted protein [Populus trichocarpa] gi|222867568|gb|EEF04699.1| predicted protein [Populus trichocarpa]

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/251 (88%), Positives = 236/251 (94%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           +LLDLLSGKHIPPSHALDLIR KNFL+LMDSALEGHFS D+GTELVRLASRCLQ EARER
Sbjct: 241 LLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARER 300

Query: 61  PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
           PNAKSLV +LMSLQKE EVPSYVL+GI+ ETA ST PLSLTP GEAC R+DLTAIHEILE
Sbjct: 301 PNAKSLVTALMSLQKETEVPSYVLMGIREETASSTLPLSLTPFGEACLRMDLTAIHEILE 360

Query: 121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
            +GYKDDEGIANELSFQMWT+QMQETLNSKKHGD AFRAKDF+TAIDCYTQFIDGGTMVS
Sbjct: 361 KIGYKDDEGIANELSFQMWTNQMQETLNSKKHGDAAFRAKDFATAIDCYTQFIDGGTMVS 420

Query: 181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
           PTVYARRCLSYLM+DMPQEALGDAMQAQVVSPDW TA YLQAACLFSLGME DA+ETLKD
Sbjct: 421 PTVYARRCLSYLMSDMPQEALGDAMQAQVVSPDWSTASYLQAACLFSLGMETDAQETLKD 480

Query: 241 GTNLEAKKNKN 251
           GT+LEAK+NKN
Sbjct: 481 GTHLEAKRNKN 491

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440554|ref|XP_002276280.1| PREDICTED: probable serine/threonine-protein kinase At5g41260 [Vitis vinifera] gi|297740276|emb|CBI30458.3| unnamed protein product [Vitis vinifera]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/251 (86%), Positives = 234/251 (93%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           +LLDLLSGKHIPPSHALDLIR KNFL+LMDS LEGHFSND+GTELVRLASRCLQ EARER
Sbjct: 241 LLLDLLSGKHIPPSHALDLIRGKNFLMLMDSCLEGHFSNDDGTELVRLASRCLQYEARER 300

Query: 61  PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
           PNAKSLV +LMSLQKE EVPSY+L+GI H+TA   +PLSLTP GEAC R+DLTAIHEIL+
Sbjct: 301 PNAKSLVTALMSLQKETEVPSYILMGIAHDTASPAEPLSLTPFGEACLRMDLTAIHEILD 360

Query: 121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
            +GYKDDEGIANELSFQMWT+QMQETLNSKKHGDTAFRAKDF+TAIDCYTQFIDGGTMVS
Sbjct: 361 KIGYKDDEGIANELSFQMWTNQMQETLNSKKHGDTAFRAKDFTTAIDCYTQFIDGGTMVS 420

Query: 181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
           PTVYARRCLSYLMNDMPQEALGDAMQAQVVSP+W TA YLQAA LFSLGM+ DA+ETLKD
Sbjct: 421 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPEWATAFYLQAAALFSLGMDTDAQETLKD 480

Query: 241 GTNLEAKKNKN 251
           GTNLE KK+KN
Sbjct: 481 GTNLEVKKSKN 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573947|ref|XP_002527892.1| receptor protein kinase, putative [Ricinus communis] gi|223532743|gb|EEF34523.1| receptor protein kinase, putative [Ricinus communis]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/251 (87%), Positives = 233/251 (92%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           +LLDLLSGKHIPPSHALDLI+ KNF +LMDSALEG FS D+GTELVRLASRCLQ EARER
Sbjct: 241 LLLDLLSGKHIPPSHALDLIKGKNFPMLMDSALEGRFSKDDGTELVRLASRCLQYEARER 300

Query: 61  PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
           PNAKSLV SL+SLQKE EVPSYVL+ I HET  ST+ LSLTP GEAC R+DLTAIHEILE
Sbjct: 301 PNAKSLVTSLLSLQKETEVPSYVLMDIPHETGSSTQQLSLTPFGEACLRVDLTAIHEILE 360

Query: 121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
            +GYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDF+TAIDCYTQFIDGGTMVS
Sbjct: 361 KLGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFATAIDCYTQFIDGGTMVS 420

Query: 181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
           PTVYARRCLSYLMNDMPQEALGDAMQAQVVSP+WPTA YLQAACLFSLGME DA+ETLKD
Sbjct: 421 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPEWPTASYLQAACLFSLGMETDAQETLKD 480

Query: 241 GTNLEAKKNKN 251
           GT LEAK+NK+
Sbjct: 481 GTKLEAKRNKS 491

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506466|ref|XP_004162757.1| PREDICTED: probable serine/threonine-protein kinase At5g41260-like [Cucumis sativus]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/251 (85%), Positives = 229/251 (91%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           +LLDLLSGKHIPPSHALDLIR KNFL+LMDSALEGHFSND+GTELVRLASRCLQ EARER
Sbjct: 241 LLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSNDDGTELVRLASRCLQYEARER 300

Query: 61  PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
           PNAKSLV +LM LQK+ EVPSYVL+GI  E A ST+PLSLTP GEAC R DLTAIHE+L+
Sbjct: 301 PNAKSLVTALMPLQKDTEVPSYVLMGITPENATSTQPLSLTPFGEACLRKDLTAIHEMLD 360

Query: 121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
             GYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRA+DF+TAIDCYTQFIDGGTMVS
Sbjct: 361 KNGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRARDFATAIDCYTQFIDGGTMVS 420

Query: 181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
           PTVYARRCLSYLMNDM QEALGDAMQAQ +SP+W TA YLQA CLFSLGMENDA+E LK+
Sbjct: 421 PTVYARRCLSYLMNDMGQEALGDAMQAQAISPEWATAFYLQATCLFSLGMENDAQEALKE 480

Query: 241 GTNLEAKKNKN 251
           GT  EAKKNKN
Sbjct: 481 GTKFEAKKNKN 491

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496122|ref|XP_003516919.1| PREDICTED: LOW QUALITY PROTEIN: probable serine/threonine-protein kinase At5g41260-like [Glycine max]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/251 (85%), Positives = 228/251 (90%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           +LLDLLSGKHIPPS ALDLIR KNFL+LMDSALEGHFS D+GTELVRLASRCLQ EARER
Sbjct: 240 LLLDLLSGKHIPPSLALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARER 299

Query: 61  PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
           PNAKSLV SLMSLQ E EVPSYVL+G++ ETA   K ++LTP GEAC RLDLTAIHEILE
Sbjct: 300 PNAKSLVASLMSLQNETEVPSYVLMGLRQETASXNKAITLTPFGEACLRLDLTAIHEILE 359

Query: 121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
             GYKDDEGIANELSFQ+WTSQMQETLN KKHGDTAFRAKDF TAIDCYTQFIDGGTMVS
Sbjct: 360 KTGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFITAIDCYTQFIDGGTMVS 419

Query: 181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
           PTVYA RCLS LMNDM QEALGDAMQAQVVSP+WPTALYL AACLFSLGMENDA+ETLKD
Sbjct: 420 PTVYAIRCLSLLMNDMAQEALGDAMQAQVVSPEWPTALYLHAACLFSLGMENDAQETLKD 479

Query: 241 GTNLEAKKNKN 251
           GTN+E +KNKN
Sbjct: 480 GTNMEGRKNKN 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460335|ref|XP_004147901.1| PREDICTED: probable serine/threonine-protein kinase At5g41260-like [Cucumis sativus]

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/251 (84%), Positives = 228/251 (90%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           +LLDLLSGKHIPPSHALDLIR KNFL+LMDSALEGHFSND+GTELVRLASRCLQ EARER
Sbjct: 241 LLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSNDDGTELVRLASRCLQYEARER 300

Query: 61  PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
           PNAKSLV +LM LQK+ EV SYVL+GI  E A ST+PLSLTP GEAC R DLTAIHE+L+
Sbjct: 301 PNAKSLVTALMPLQKDTEVLSYVLMGITPENATSTQPLSLTPFGEACLRKDLTAIHEMLD 360

Query: 121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
             GYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRA+DF+TAIDCYTQFIDGGTMVS
Sbjct: 361 KNGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRARDFATAIDCYTQFIDGGTMVS 420

Query: 181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
           PTVYARRCLSYLMNDM QEALGDAMQAQ +SP+W TA YLQA CLFSLGMENDA+E LK+
Sbjct: 421 PTVYARRCLSYLMNDMGQEALGDAMQAQAISPEWATAFYLQATCLFSLGMENDAQEALKE 480

Query: 241 GTNLEAKKNKN 251
           GT  EAKKNKN
Sbjct: 481 GTKFEAKKNKN 491

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745973|emb|CBI16029.3| unnamed protein product [Vitis vinifera]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/250 (84%), Positives = 228/250 (91%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           +LLDLLSGKHIPPSHALDLIR KNFL+LMDS LEGHFSND+GTELVRLASRCLQ E RER
Sbjct: 240 LLLDLLSGKHIPPSHALDLIRGKNFLMLMDSCLEGHFSNDDGTELVRLASRCLQYEPRER 299

Query: 61  PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
           PNA+SLV SL  LQKE EVPSYVL+GIQ ET    + L LTPLGEACSR+DLTAIHEILE
Sbjct: 300 PNARSLVTSLTPLQKETEVPSYVLMGIQQETVSPAETLPLTPLGEACSRMDLTAIHEILE 359

Query: 121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
            +GYKDDEG+ANELSFQMWT+Q+QETLNSKK GDTAFRAKDF+TAI+CYTQFIDGGTMVS
Sbjct: 360 KVGYKDDEGVANELSFQMWTNQIQETLNSKKRGDTAFRAKDFTTAIECYTQFIDGGTMVS 419

Query: 181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
           PTV+ARRCL YLMN+MPQEALGDAMQAQVVSPDW TA YLQAA LFSLGM+NDARETLKD
Sbjct: 420 PTVFARRCLCYLMNEMPQEALGDAMQAQVVSPDWSTAFYLQAAALFSLGMDNDARETLKD 479

Query: 241 GTNLEAKKNK 250
           GT LEAK+N+
Sbjct: 480 GTTLEAKRNR 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478579|ref|XP_002280021.2| PREDICTED: probable serine/threonine-protein kinase At5g41260-like [Vitis vinifera]

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/250 (84%), Positives = 226/250 (90%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           +LLDLLSGKHIPPSHALDLIR KNFL+LMDS LEGHFSND+GTELVRLASRCLQ E RER
Sbjct: 240 LLLDLLSGKHIPPSHALDLIRGKNFLMLMDSCLEGHFSNDDGTELVRLASRCLQYEPRER 299

Query: 61  PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
           PNA+SLV SL  LQKE EVPSYVL+GIQ ET    + L LTPLGEACSR+DLTAIHEILE
Sbjct: 300 PNARSLVTSLTPLQKETEVPSYVLMGIQQETVSPAETLPLTPLGEACSRMDLTAIHEILE 359

Query: 121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
            +GYKDDEG+ANELSFQMWT+Q+QETLNSKK GDTAFRAKDF+TAI+CYTQFIDGGTMVS
Sbjct: 360 KVGYKDDEGVANELSFQMWTNQIQETLNSKKRGDTAFRAKDFTTAIECYTQFIDGGTMVS 419

Query: 181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
           PTV+ARRCL YLMN+MPQEALGDAMQAQVVSPDW TA YLQAA LFSLGM+NDARETLKD
Sbjct: 420 PTVFARRCLCYLMNEMPQEALGDAMQAQVVSPDWSTAFYLQAAALFSLGMDNDARETLKD 479

Query: 241 GTNLEAKKNK 250
           GT LE KK K
Sbjct: 480 GTTLEGKKQK 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
TAIR|locus:2084475	490	BSK6 "brassinosteroid-signalin	0.996	0.510	0.797	2e-104
TAIR|locus:2154538	489	BSK5 "brassinosteroid-signalin	1.0	0.513	0.776	1.1e-103
TAIR|locus:2031279	487	BSK7 "brassinosteroid-signalin	0.980	0.505	0.692	1.6e-88
TAIR|locus:2127118	489	BSK3 "brassinosteroid-signalin	0.972	0.498	0.694	3.8e-85
TAIR|locus:2155115	487	BSK8 "brassinosteroid-signalin	0.976	0.503	0.662	1.9e-83
TAIR|locus:2122058	512	BSK1 "brassinosteroid-signalin	0.992	0.486	0.625	3.3e-79
TAIR|locus:2150074	499	BSK10 "brassinosteroid-signali	0.980	0.492	0.578	3.5e-75
TAIR|locus:2083499	477	BSK9 "brassinosteroid-signalin	0.980	0.515	0.601	7.3e-75
TAIR|locus:2142315	489	BSK2 "brassinosteroid-signalin	0.992	0.509	0.561	3.7e-71
TAIR|locus:2198160	483	BSK4 "brassinosteroid-signalin	0.952	0.494	0.604	3.8e-69

TAIR|locus:2084475 BSK6 "brassinosteroid-signaling kinase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
 Identities = 201/252 (79%), Positives = 224/252 (88%)

Query:     1 MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
             +LLDL+SGKHIPPSHALDLIR KN  +LMDSALEGHFSN++GTELVRLA+RCLQ EARER
Sbjct:   238 VLLDLMSGKHIPPSHALDLIRGKNCAMLMDSALEGHFSNEDGTELVRLATRCLQYEARER 297

Query:    61 PNAKSLVISLMSLQKEAEVPSYVLLGIQHET-APSTKPLSLTPLGEACSRLDLTAIHEIL 119
             PN KSLV SL++LQKE++V SYVL+GI HET A    PLSLTP G+AC R+DLTAI EIL
Sbjct:   298 PNVKSLVTSLVTLQKESDVASYVLMGIPHETEAEEESPLSLTPFGDACLRVDLTAIQEIL 357

Query:   120 EGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV 179
               +GYKDDEGIANELSFQMWT+QMQE+LNSKK GD AFR+KDF+TA+DCYTQFIDGGTMV
Sbjct:   358 SKIGYKDDEGIANELSFQMWTNQMQESLNSKKQGDLAFRSKDFTTAVDCYTQFIDGGTMV 417

Query:   180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK 239
             SPTV+ARRCLSYLMND  QEAL DA+QAQVVSPDWPTALYLQAACLF LGME DA++ LK
Sbjct:   418 SPTVHARRCLSYLMNDNAQEALTDALQAQVVSPDWPTALYLQAACLFKLGMEADAQQALK 477

Query:   240 DGTNLEAKK-NK 250
             DGT LEAKK NK
Sbjct:   478 DGTTLEAKKSNK 489

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2154538 BSK5 "brassinosteroid-signaling kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 195/251 (77%), Positives = 221/251 (88%)

Query:     1 MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
             +LLDLLSGKHIPPSHALDLIR KNFL+LMDS L+GHFSND+GT+LVRLASRCLQ EARER
Sbjct:   237 LLLDLLSGKHIPPSHALDLIRGKNFLMLMDSCLDGHFSNDDGTDLVRLASRCLQYEARER 296

Query:    61 PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
             PN KSLV SL  LQKE ++PS+VL+GI H  A   +  SLTPLG+ACSR DLTAIHEILE
Sbjct:   297 PNVKSLVSSLAPLQKETDIPSHVLMGIPHGAASPKETTSLTPLGDACSRHDLTAIHEILE 356

Query:   121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
              +GYKDDEG+ANELSFQ+WT Q+QETLNSKK GD AF+ KDF TA++CYTQFI+ GTMVS
Sbjct:   357 KVGYKDDEGVANELSFQVWTDQIQETLNSKKQGDAAFKGKDFVTAVECYTQFIEDGTMVS 416

Query:   181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
             PTV+ARRCL YLM++MPQEALGDAMQAQVVSP+WPTA YLQAA LFSLGM+ DA ETLKD
Sbjct:   417 PTVFARRCLCYLMSNMPQEALGDAMQAQVVSPEWPTAFYLQAAALFSLGMDKDACETLKD 476

Query:   241 GTNLEAKKNKN 251
             GT+LEAKK+ N
Sbjct:   477 GTSLEAKKHNN 487

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2031279 BSK7 "brassinosteroid-signaling kinase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
 Identities = 173/250 (69%), Positives = 204/250 (81%)

Query:     1 MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
             +LLDLLSGKHIPPSHALDLIR +N  +L+DS LEG FS+D+GTEL+RLASRCLQ E RER
Sbjct:   241 LLLDLLSGKHIPPSHALDLIRDRNIQMLIDSCLEGQFSSDDGTELIRLASRCLQYEPRER 300

Query:    61 PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
             PN KSLV +++ LQK+ E PS+ L+GI   ++ ST PLS  PLGEAC R DLTAIHEILE
Sbjct:   301 PNPKSLVTAMIPLQKDLETPSHQLMGIP--SSASTTPLS--PLGEACLRTDLTAIHEILE 356

Query:   121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
              + YKDDEG A ELSFQMWT+QMQ++LN KK GD AFR K+F+ AIDCY+QFI+GGTMVS
Sbjct:   357 KLSYKDDEGAATELSFQMWTNQMQDSLNFKKKGDVAFRHKEFANAIDCYSQFIEGGTMVS 416

Query:   181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
             PTVYARR L YLMN+MPQEAL DAMQAQV+SP W  A YLQA  L +LG EN+A   LKD
Sbjct:   417 PTVYARRSLCYLMNEMPQEALNDAMQAQVISPAWHIASYLQAVALSALGQENEAHAALKD 476

Query:   241 GTNLEAKKNK 250
             G+ LE+K+N+
Sbjct:   477 GSMLESKRNR 486

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2127118 BSK3 "brassinosteroid-signaling kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 173/249 (69%), Positives = 199/249 (79%)

Query:     1 MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
             +LLDLLSGKHIPPSHALDLIR +N   L DS L+G FS+ +GTELVRLASRCLQ EARER
Sbjct:   240 LLLDLLSGKHIPPSHALDLIRDRNLQTLTDSCLDGQFSDSDGTELVRLASRCLQYEARER 299

Query:    61 PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
             PN KSLV +L  LQKE EV S+VL+G+ H  + S  PLS  PLGEACSR DLTA+ EILE
Sbjct:   300 PNTKSLVTALTPLQKETEVLSHVLMGLPH--SGSVSPLS--PLGEACSRRDLTAMLEILE 355

Query:   121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
              +GYKDDEG+ NELSF MWT QMQE+LNSKK GD AFR KDF  AI+CYTQFIDGG M+S
Sbjct:   356 KLGYKDDEGVTNELSFHMWTDQMQESLNSKKKGDVAFRQKDFREAIECYTQFIDGG-MIS 414

Query:   181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
             PTV ARR L YLM+DMP+EAL DA+QAQV+SP W  A YLQ+A L  LGME +++  LK+
Sbjct:   415 PTVCARRSLCYLMSDMPKEALDDAIQAQVISPVWHVASYLQSASLGILGMEKESQIALKE 474

Query:   241 GTNLEAKKN 249
             G+NLEAK N
Sbjct:   475 GSNLEAKMN 483

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2155115 BSK8 "brassinosteroid-signaling kinase 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 165/249 (66%), Positives = 200/249 (80%)

Query:     1 MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
             +LLDLLSGKHIPPSHALDLIR +N  +LMDS LEG FS+D+GTEL+RLASRCLQ E RER
Sbjct:   241 LLLDLLSGKHIPPSHALDLIRDRNIQMLMDSGLEGQFSSDDGTELIRLASRCLQYEPRER 300

Query:    61 PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
             PN KSLV +++ LQK+ E+ S+ LLG+ + +A +T   +L+PLGEAC R DLTAIHEI+E
Sbjct:   301 PNPKSLVSAMIPLQKDLEIASHQLLGVPN-SATTT---ALSPLGEACLRSDLTAIHEIIE 356

Query:   121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
              +GYKDDEG   ELSFQMWT QMQ+TL  KK GD+AFR KDF+ AI+CY+QFI+ GTM S
Sbjct:   357 KLGYKDDEGATTELSFQMWTDQMQDTLVFKKKGDSAFRHKDFAKAIECYSQFIEVGTMGS 416

Query:   181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
             PTV+AR+ L YLMNDMP+EAL +AMQAQV+SP W  A YLQA  L +LG EN+A   LKD
Sbjct:   417 PTVHARQSLCYLMNDMPREALNNAMQAQVISPAWHIASYLQAVALSALGQENEAHTALKD 476

Query:   241 GTNLEAKKN 249
             G  LE+K+N
Sbjct:   477 GAMLESKRN 485

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2122058 BSK1 "brassinosteroid-signaling kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 157/251 (62%), Positives = 188/251 (74%)

Query:     1 MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
             +LLDLLSGKHIPPSHALD+IR KN +LLMDS LEG FS +E T +V LAS+CLQ E RER
Sbjct:   258 VLLDLLSGKHIPPSHALDMIRGKNIILLMDSHLEGKFSTEEATVVVELASQCLQYEPRER 317

Query:    61 PNAKSLVISLMSLQKEAEVPSYVLLGIQ-HETAPSTKPLSLTPLGEACSRLDLTAIHEIL 119
             PN K LV +L  LQ +++VPSYV+LGI+  E APST    L+PLGEACSR+DLTAIH+IL
Sbjct:   318 PNTKDLVATLAPLQTKSDVPSYVMLGIKKQEEAPSTPQRPLSPLGEACSRMDLTAIHQIL 377

Query:   120 EGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV 179
                 Y+DDEG  NELSFQ WT QM++ L+++K GD +FR KDF TAIDCY+QFID GTMV
Sbjct:   378 VMTHYRDDEG-TNELSFQEWTQQMKDMLDARKRGDQSFREKDFKTAIDCYSQFIDVGTMV 436

Query:   180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK 239
             SPTV+ RR L YL+ D P  AL DAMQAQ V PDWPTA Y+Q+  L  L M  DA + L 
Sbjct:   437 SPTVFGRRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVALAKLNMNTDAADMLN 496

Query:   240 DGTNLEAKKNK 250
             +   LE K+ +
Sbjct:   497 EAAQLEEKRQR 507

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2150074 BSK10 "brassinosteroid-signaling kinase 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 147/254 (57%), Positives = 189/254 (74%)

Query:     1 MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
             +LLDL+SG+HIPP+HALDL R KN+L+LMDSAL+G FS+++ TEL+ +ASRC ++E  ER
Sbjct:   245 LLLDLMSGRHIPPNHALDLFRGKNYLVLMDSALDGQFSDEDRTELIHVASRCFKTEPEER 304

Query:    61 PNAKSLVISLMSLQKEAEV-PSYVLL-------GIQHETAPSTKPLSLTPLGEACSRLDL 112
             P+ K L  +L  LQK A++ P  V          +  +T P+T+ L LTP G+ACSR DL
Sbjct:   305 PSIKFLKATLSRLQKRAKLCPINVKRPMSPPSKNLPEKTKPATESLKLTPFGDACSRADL 364

Query:   113 TAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQF 172
             ++IHE+LE +GY++D G+ NE SFQMWT +MQE ++ KKHGD AF AKDF TAI+ YT+F
Sbjct:   365 SSIHELLEKLGYEEDNGVGNEFSFQMWTGEMQENMDYKKHGDAAFLAKDFDTAIEFYTEF 424

Query:   173 IDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMEN 232
             + G   VSPTV ARRCL YLM +M  EAL DAMQAQV SP+WP  LYLQAACLF L ME 
Sbjct:   425 MTGAPTVSPTVLARRCLCYLMTEMFSEALSDAMQAQVASPEWPIPLYLQAACLFKLEMEA 484

Query:   233 DARETLKDGTNLEA 246
             +A+E L+ G+ LEA
Sbjct:   485 EAKEALRHGSALEA 498

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2083499 BSK9 "brassinosteroid-signaling kinase 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 151/251 (60%), Positives = 192/251 (76%)

Query:     1 MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
             +LLDL+SG+HIPP+HALDL R KN+L+LMDSAL+G FS+++ TEL+ LASRCL+ E  ER
Sbjct:   226 LLLDLMSGRHIPPNHALDLFRGKNYLVLMDSALDGQFSDEDRTELIHLASRCLRPEPDER 285

Query:    61 PNAKSLVISLMSLQKEAEV-PSYVLLGIQHE--TAPSTK-PLSLTPLGEACSRLDLTAIH 116
             P+ K L+ +L  L+K AE+ P+     I     T P+TK PL LTP GEAC R+DL+ +H
Sbjct:   286 PSIKFLMSALSRLEKRAELWPNVKEENIPTPSYTEPATKEPLPLTPFGEACWRVDLSGMH 345

Query:   117 EILEGMGY-KDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG 175
             E+LE +GY +DD  + NE SFQMWT QMQE ++ KKHGD AFRAKDF TAI+ YT+F+ G
Sbjct:   346 ELLEKLGYGEDDVVVTNEFSFQMWTGQMQENMDYKKHGDAAFRAKDFETAIEFYTEFMSG 405

Query:   176 GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDAR 235
               +VSPTV ARRCL YLM+DM +EAL DAMQ QV SP++  ALYLQAACL  LGME +A+
Sbjct:   406 APVVSPTVLARRCLCYLMSDMFREALSDAMQTQVASPEFSIALYLQAACLLKLGMEAEAK 465

Query:   236 ETLKDGTNLEA 246
             E L+ G++LEA
Sbjct:   466 EALRHGSSLEA 476

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2142315 BSK2 "brassinosteroid-signaling kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 141/251 (56%), Positives = 183/251 (72%)

Query:     1 MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
             +LLDLLSGKHIPPSHALD+IR KN LLLMDS+LEG ++ND+ T+LV LAS+CLQSEA++R
Sbjct:   238 ILLDLLSGKHIPPSHALDIIRGKNALLLMDSSLEGQYANDDATKLVDLASKCLQSEAKDR 297

Query:    61 PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
             P+ K L+ ++  LQK+ EV S+VL+G+   T     P  L+PLG+AC+++DL   H+IL 
Sbjct:   298 PDTKFLLSAVAPLQKQEEVASHVLMGLPKNTV--ILPTMLSPLGKACAKMDLATFHDILL 355

Query:   121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
               GY+D+EG  NELSFQ WT Q+QE LN+KK GD AFR KDF  +I+ Y++ +    + S
Sbjct:   356 KTGYRDEEGAENELSFQEWTQQVQEMLNTKKFGDIAFRDKDFKNSIEYYSKLVGMMPVPS 415

Query:   181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
              TV+ARR  SYLM D  + AL DAMQAQV  P+WPTA YLQA  L  LGME DA++ L D
Sbjct:   416 ATVFARRAFSYLMTDQQELALRDAMQAQVCIPEWPTAFYLQALALSKLGMETDAQDMLND 475

Query:   241 GTNLEAKKNKN 251
             G   +AK+  +
Sbjct:   476 GAAYDAKRQNS 486

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IDA

TAIR|locus:2198160 BSK4 "brassinosteroid-signaling kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 150/248 (60%), Positives = 184/248 (74%)

Query:     1 MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
             +LLDLL+GKHIPPSHALDLIR +N   L DS LEG FS+ +GTELVRL S CLQ EARER
Sbjct:   238 LLLDLLTGKHIPPSHALDLIRDRNLQTLTDSCLEGQFSDSDGTELVRLTSCCLQYEARER 297

Query:    61 PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILE 120
             PN KSLV +L+SLQK+ EV S+VL+G+      ++ P   +P  EACS  DLT++ EILE
Sbjct:   298 PNIKSLVTALISLQKDTEVLSHVLMGLPQSGTFASPP---SPFAEACSGKDLTSMVEILE 354

Query:   121 GMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS 180
              +GYKDDE    +LSF MWT QMQE +NSKK GD AFR KDFS AI+ YTQF+D G M+S
Sbjct:   355 KIGYKDDE----DLSF-MWTEQMQEAINSKKKGDIAFRRKDFSEAIEFYTQFLDLG-MIS 408

Query:   181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
              TV  RR  SYLM++M +EAL DAM+AQ +SP W  ALYLQ+A L  LGME +++  L +
Sbjct:   409 ATVLVRRSQSYLMSNMAKEALDDAMKAQGISPVWYVALYLQSAALSVLGMEKESQIALTE 468

Query:   241 GTNLEAKK 248
             G+ LEA+K
Sbjct:   469 GSILEARK 476

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VI0748 hypothetical protein (491 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-04

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 206
              G+  ++  D+  A++ Y + ++    + P     Y     +Y      +EAL D  +
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALE----LDPDNADAYYNLAAAYYKLGKYEEALEDYEK 59

Query: 207 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK 247
           A  + PD   A Y      + LG   +A E  +    L+  
Sbjct: 60  ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYL-MNDMPQEALGDAMQAQ 208
           K  G+  F+  D+  AI+ Y + ++     +   Y    L+YL +    +EAL D  +A 
Sbjct: 7   KNLGNALFKLGDYDEAIEAYEKALELDPD-NAEAYYNLALAYLKLGKDYEEALEDLEKAL 65

Query: 209 VVSP 212
            + P
Sbjct: 66  ELDP 69

Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
KOG0553	304	consensus TPR repeat-containing protein [General f	99.92
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.79
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.77
KOG4234	271	consensus TPR repeat-containing protein [General f	99.77
PRK15359	144	type III secretion system chaperone protein SscB;	99.76
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.74
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.73
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.73
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.7
PRK11189	296	lipoprotein NlpI; Provisional	99.67
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.67
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.67
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.64
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.63
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.6
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.59
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.58
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.58
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.57
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.53
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.52
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.52
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.52
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.51
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.5
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.49
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.49
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.49
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.47
KOG1125	579	consensus TPR repeat-containing protein [General f	99.47
PRK11189	296	lipoprotein NlpI; Provisional	99.46
KOG1126	638	consensus DNA-binding cell division cycle control	99.46
PRK12370	553	invasion protein regulator; Provisional	99.45
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.44
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.43
PRK12370	553	invasion protein regulator; Provisional	99.43
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.4
PRK15359	144	type III secretion system chaperone protein SscB;	99.39
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.39
KOG4555	175	consensus TPR repeat-containing protein [Function	99.38
PLN02789	320	farnesyltranstransferase	99.37
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.36
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.35
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.35
PRK15331	165	chaperone protein SicA; Provisional	99.35
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.34
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.34
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.33
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.33
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.33
KOG1126	638	consensus DNA-binding cell division cycle control	99.33
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.32
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.32
PRK10803	263	tol-pal system protein YbgF; Provisional	99.31
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.3
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.3
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.29
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.26
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.24
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.23
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.22
PLN02789	320	farnesyltranstransferase	99.21
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.21
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.2
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.19
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.19
PF13512	142	TPR_18: Tetratricopeptide repeat	99.19
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.18
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.17
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.16
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.16
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.15
KOG1125	579	consensus TPR repeat-containing protein [General f	99.15
KOG0553	304	consensus TPR repeat-containing protein [General f	99.14
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.13
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.13
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.13
PF13371	73	TPR_9: Tetratricopeptide repeat	99.13
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.12
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.11
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.11
KOG2076	895	consensus RNA polymerase III transcription factor	99.1
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.1
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.1
PF12688	120	TPR_5: Tetratrico peptide repeat	99.1
KOG2076	895	consensus RNA polymerase III transcription factor	99.09
PF13371	73	TPR_9: Tetratricopeptide repeat	99.08
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.08
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.04
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.03
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.03
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.02
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.97
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.97
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.96
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.95
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.95
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.94
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.93
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.93
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.93
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.93
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.91
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.9
PRK14574	822	hmsH outer membrane protein; Provisional	98.89
PRK11906	458	transcriptional regulator; Provisional	98.87
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.85
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.79
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.79
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.78
PRK14574	822	hmsH outer membrane protein; Provisional	98.77
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.76
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.75
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.74
KOG1310	758	consensus WD40 repeat protein [General function pr	98.73
KOG2003	840	consensus TPR repeat-containing protein [General f	98.72
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.71
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.71
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.7
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.69
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.69
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.69
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.68
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.65
KOG1129	478	consensus TPR repeat-containing protein [General f	98.65
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.63
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.62
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.62
PRK11906	458	transcriptional regulator; Provisional	98.62
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.61
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.6
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.6
PF13431	34	TPR_17: Tetratricopeptide repeat	98.58
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.57
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.56
KOG1129	478	consensus TPR repeat-containing protein [General f	98.55
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.51
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.5
PF13428	44	TPR_14: Tetratricopeptide repeat	98.5
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.5
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.49
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.47
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.47
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.47
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.46
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.46
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.45
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.45
PF13431	34	TPR_17: Tetratricopeptide repeat	98.44
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.44
KOG4234	271	consensus TPR repeat-containing protein [General f	98.42
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.42
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.41
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.37
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.37
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.32
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.32
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.32
PRK10803	263	tol-pal system protein YbgF; Provisional	98.31
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.3
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.28
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.27
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.26
PF12688	120	TPR_5: Tetratrico peptide repeat	98.25
PF13512	142	TPR_18: Tetratricopeptide repeat	98.24
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.23
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.21
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.21
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.21
PRK15331	165	chaperone protein SicA; Provisional	98.2
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.19
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.19
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.18
KOG4555	175	consensus TPR repeat-containing protein [Function	98.12
KOG2003	840	consensus TPR repeat-containing protein [General f	98.12
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.11
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.1
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.07
PF13428	44	TPR_14: Tetratricopeptide repeat	98.07
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.06
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.06
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.0
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.0
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.96
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.93
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.93
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.92
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.92
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.91
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.89
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.85
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.82
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.81
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.8
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.73
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.7
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.69
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.69
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.67
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.66
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.66
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.65
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.64
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.63
PLN03077	857	Protein ECB2; Provisional	97.62
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.62
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.6
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.58
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.58
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.55
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.55
PRK10941	269	hypothetical protein; Provisional	97.53
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.51
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.51
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.49
PRK10941	269	hypothetical protein; Provisional	97.45
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.45
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.44
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.4
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.37
PLN03218	1060	maturation of RBCL 1; Provisional	97.37
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.33
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.31
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.3
PRK04841	903	transcriptional regulator MalT; Provisional	97.29
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.29
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.29
PLN03218	1060	maturation of RBCL 1; Provisional	97.27
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.26
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.25
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.25
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.25
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.22
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.2
PRK04841	903	transcriptional regulator MalT; Provisional	97.18
KOG2471	696	consensus TPR repeat-containing protein [General f	97.16
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.15
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.11
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.06
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.0
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.99
PLN03077	857	Protein ECB2; Provisional	96.97
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.96
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.95
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.94
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.89
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.89
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.83
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.75
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.74
KOG2471	696	consensus TPR repeat-containing protein [General f	96.72
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.71
KOG1585	308	consensus Protein required for fusion of vesicles	96.71
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.64
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.6
KOG1586	288	consensus Protein required for fusion of vesicles	96.59
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.59
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.58
KOG1586	288	consensus Protein required for fusion of vesicles	96.56
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.56
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	96.49
KOG3364	149	consensus Membrane protein involved in organellar	96.48
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.47
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.44
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.34
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.29
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.27
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.11
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.1
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	96.05
COG2912	269	Uncharacterized conserved protein [Function unknow	96.03
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.02
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.02
COG2912	269	Uncharacterized conserved protein [Function unknow	95.97
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.96
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.95
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	95.94
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.85
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.8
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.8
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	95.71
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.71
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.67
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.65
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.6
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	95.56
KOG3364	149	consensus Membrane protein involved in organellar	95.49
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.41
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.37
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	95.31
PHA02988	283	hypothetical protein; Provisional	95.28
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.28
KOG1585	308	consensus Protein required for fusion of vesicles	95.21
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.15
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	95.09
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.97
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	94.87
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.83
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.77
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	94.75
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.68
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.68
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	94.65
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.63
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	94.61
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	94.49
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.47
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.46
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.25
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.21
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	94.13
COG3947	361	Response regulator containing CheY-like receiver a	93.98
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.87
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.79
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.65
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.61
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	93.37
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	93.37
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.2
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	93.14
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	93.13
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.11
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	92.97
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.93
KOG0529	421	consensus Protein geranylgeranyltransferase type I	92.93
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	92.89
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	92.73
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	92.63
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	92.59
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.59
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	92.52
COG4455	273	ImpE Protein of avirulence locus involved in tempe	92.26
KOG0529	421	consensus Protein geranylgeranyltransferase type I	92.24
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	92.19
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	92.18
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	92.17
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	92.16
KOG2300	629	consensus Uncharacterized conserved protein [Funct	92.07
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	92.05
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	91.95
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	91.91
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	91.87
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.76
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	91.75
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	91.74
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	91.69
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	91.66
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	91.64
COG3898	531	Uncharacterized membrane-bound protein [Function u	91.54
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	91.5
KOG2047	835	consensus mRNA splicing factor [RNA processing and	91.5
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.48
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	91.47
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	91.4
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	91.39
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.39
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	91.33
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	91.33
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	91.3
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.26
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	91.1
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	91.1
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.06
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	91.0
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.97
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	90.94
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	90.88
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	90.88
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	90.85
COG4941	415	Predicted RNA polymerase sigma factor containing a	90.7
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	90.69
KOG0192	362	consensus Tyrosine kinase specific for activated (	90.62
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	90.54
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	90.51
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	90.49
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	90.47
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	90.44
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	90.36
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	90.32
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.3
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	90.3
KOG4814	872	consensus Uncharacterized conserved protein [Funct	90.22
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	90.18
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	90.12
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	90.1
PF04212	69	MIT: MIT (microtubule interacting and transport) d	90.07
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	89.96
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	89.96
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	89.93
COG3118	304	Thioredoxin domain-containing protein [Posttransla	89.88
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	89.75
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	89.7
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	89.68
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	89.53
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	89.49
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	89.44
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	89.38
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	89.38
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	89.35
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	89.35
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	89.33
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.29
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	89.23
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	89.23
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	89.17
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	89.06
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	89.06
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	89.03
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	88.95
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	88.95
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	88.83
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	88.81
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	88.66
PHA02537	230	M terminase endonuclease subunit; Provisional	88.62
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	88.62
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	88.6
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.49
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.39
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	88.26
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	88.03
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	87.84
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	87.78
KOG0198	313	consensus MEKK and related serine/threonine protei	87.54
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	87.45
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	87.44
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	87.43
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	87.4
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	87.37
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	87.34
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	87.18
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	87.15
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	87.12
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	87.07
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	87.02
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	86.99
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	86.97
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	86.95
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	86.91
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	86.9
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	86.78
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	86.75
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	86.73
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	86.7
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	86.68
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	86.66
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	86.65
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	86.55
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	86.53
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	86.41
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	86.33
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	86.33
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	86.3
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	86.22
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	86.2
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	86.19
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	86.07
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	86.07
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	86.05
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	85.95
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	85.95
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	85.66
COG3947	361	Response regulator containing CheY-like receiver a	85.63
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	85.4
PHA02882	294	putative serine/threonine kinase; Provisional	85.3
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	85.27
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	85.16
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	85.06
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	85.06
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	84.99
KOG2300	629	consensus Uncharacterized conserved protein [Funct	84.8
KOG2581	493	consensus 26S proteasome regulatory complex, subun	84.8
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	84.73
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	84.69
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	84.45
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	84.38
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	84.26
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	84.22
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	84.22
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	84.22
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	84.22
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	84.13
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	84.11
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	84.0
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	83.63
cd02656	75	MIT MIT: domain contained within Microtubule Inter	83.59
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	83.19
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	83.15
PF13041	50	PPR_2: PPR repeat family	82.97
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	82.46
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	81.95
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	81.81
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	81.77
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	81.57
KOG2047	835	consensus mRNA splicing factor [RNA processing and	81.56
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	81.53
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	81.48
PTZ00283	496	serine/threonine protein kinase; Provisional	81.36
KOG1310	758	consensus WD40 repeat protein [General function pr	80.85
KOG3616	1636	consensus Selective LIM binding factor [Transcript	80.82
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	80.71

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.92  E-value=2e-24  Score=173.82  Aligned_cols=107  Identities=21%  Similarity=0.323  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ....|+.+|.+|+.+++.++|.+|+..|++||+++|. ++.+|+|||.+|.++|+|+.|+++|+.||.+||++.++|-++
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            4556999999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |.+|+.+|+|++|+..|++||+|+|+|.
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence            9999999999999999999999999875

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=7.5e-19  Score=150.91  Aligned_cols=107  Identities=22%  Similarity=0.366  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ++..++..+.+|+.+|+.|+|..|+..|++||..+|+ ++.+|.|||.||.++|.+..|+.||+++++++|++.++|+|.
T Consensus       354 ~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RK  432 (539)
T KOG0548|consen  354 NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRK  432 (539)
T ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            3455888899999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |.++..+.+|+.|++.|.+++++||++.
T Consensus       433 g~al~~mk~ydkAleay~eale~dp~~~  460 (539)
T KOG0548|consen  433 GAALRAMKEYDKALEAYQEALELDPSNA  460 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence            9999999999999999999999999864

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=1.1e-18  Score=149.91  Aligned_cols=103  Identities=27%  Similarity=0.445  Sum_probs=100.0

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      +..++.+||.+|..|+|+.|+.+|+.||.++|. |...|.||+.+|..+|+|.+|+.+..++++++|+|+++|.++|.++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~   80 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL   80 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence            456789999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          226 FSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ..+|+|++|+..|.++|+.+|+|.
T Consensus        81 ~~lg~~~eA~~ay~~GL~~d~~n~  104 (539)
T KOG0548|consen   81 FGLGDYEEAILAYSEGLEKDPSNK  104 (539)
T ss_pred             HhcccHHHHHHHHHHHhhcCCchH
Confidence            999999999999999999999874

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=4e-18  Score=130.04  Aligned_cols=108  Identities=18%  Similarity=0.255  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV----SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTA  217 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  217 (251)
                      ....+..++..||.+|+.|+|++|...|+.||++.|..    .+.+|.|||.|+++++.++.||.+|.+||+++|.+.++
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA  170 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA  170 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence            45678999999999999999999999999999999852    35689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          218 LYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       218 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +.+++.+|.++.+|++|+.+|++.++++|...
T Consensus       171 l~RRAeayek~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  171 LERRAEAYEKMEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence            99999999999999999999999999999754

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.76  E-value=1.2e-17  Score=125.59  Aligned_cols=101  Identities=16%  Similarity=0.205  Sum_probs=97.5

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  227 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  227 (251)
                      .+...|..++..|+|++|+.+|.+++..+|. +..+|+++|.++..+|++++|+..|.+|+.++|+++.+++++|.++..
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            3667899999999999999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhhhhcc
Q 025537          228 LGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       228 ~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +|++++|+..|+++++++|++.
T Consensus       105 ~g~~~eAi~~~~~Al~~~p~~~  126 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMSYADA  126 (144)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999999863

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.74  E-value=3.7e-18  Score=139.92  Aligned_cols=104  Identities=25%  Similarity=0.299  Sum_probs=100.4

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      .+..++++||.||++|+|++||.||+++|..+|. |+..+.|||.+|++++.|..|..||..|+.++-.+.++|-++|.+
T Consensus        96 ~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A  174 (536)
T KOG4648|consen   96 KASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA  174 (536)
T ss_pred             hhHHHHHhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence            3566899999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ...+|...+|.++++.+|+|.|++.
T Consensus       175 R~~Lg~~~EAKkD~E~vL~LEP~~~  199 (536)
T KOG4648|consen  175 RESLGNNMEAKKDCETVLALEPKNI  199 (536)
T ss_pred             HHHHhhHHHHHHhHHHHHhhCcccH
Confidence            9999999999999999999999864

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=2.2e-17  Score=140.56  Aligned_cols=96  Identities=26%  Similarity=0.340  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      ...|..++.+||.+|+.|+|++||.+|++||+++|+ .+.+|.||+.||..+|+|++.+++|.+|++++|+++++++|++
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~-epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA  190 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD-EPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRA  190 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC-CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence            456899999999999999999999999999999998 7999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHH
Q 025537          223 ACLFSLGMENDARETLK  239 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~  239 (251)
                      .++..+|++++|+.+..
T Consensus       191 ~A~E~lg~~~eal~D~t  207 (606)
T KOG0547|consen  191 SAHEQLGKFDEALFDVT  207 (606)
T ss_pred             HHHHhhccHHHHHHhhh
Confidence            99999999999998876

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.73  E-value=5.9e-17  Score=139.22  Aligned_cols=102  Identities=25%  Similarity=0.331  Sum_probs=98.4

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  226 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  226 (251)
                      ..++.+|+.+|..|+|++|+.+|++||+++|+ ++.+|+++|.+|+.+|++++|+.++++|+.++|+++.+|+++|.+|+
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~   81 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM   81 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            35778899999999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             hCCCHHHHHHHHHHHHhhhhhcc
Q 025537          227 SLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       227 ~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .+|+|++|+.+|+++++++|++.
T Consensus        82 ~lg~~~eA~~~~~~al~l~P~~~  104 (356)
T PLN03088         82 KLEEYQTAKAALEKGASLAPGDS  104 (356)
T ss_pred             HhCCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999864

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.5e-16  Score=133.42  Aligned_cols=108  Identities=19%  Similarity=0.264  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--------------SPTVYARRCLSYLMNDMPQEALGDAMQA  207 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a  207 (251)
                      ....|...++.||.+|+.|+|..|+..|.+|++.-+..              --.++.|++.||+++++|.+|+..|+++
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv  283 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV  283 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            45668899999999999999999999999998763310              1247999999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          208 QVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       208 l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |+++|+|++++|++|.++..+|+|+.|+.+|+++++++|+|.
T Consensus       284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk  325 (397)
T KOG0543|consen  284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK  325 (397)
T ss_pred             HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence            999999999999999999999999999999999999999873

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.67  E-value=1.3e-15  Score=127.97  Aligned_cols=104  Identities=11%  Similarity=-0.041  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      ..+..++++|..+...|++++|+..|+++++++|+ ++.+|+++|.++..+|++++|+..|++|++++|++..+|+++|.
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  140 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI  140 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            44778999999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          224 CLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +++..|++++|+.+|+++++++|++
T Consensus       141 ~l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189        141 ALYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999975

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.67  E-value=1.4e-15  Score=112.83  Aligned_cols=107  Identities=14%  Similarity=0.197  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+......|..++..|++++|+..|++++..+|. ++.+|.++|.+++.+|++++|+..++++++++|+++..++.+
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l   91 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA   91 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            5556777889999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |.++...|++++|+..|+++++++|++.
T Consensus        92 a~~~~~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        92 AECLLALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999999865

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.67  E-value=1.6e-15  Score=113.03  Aligned_cols=102  Identities=17%  Similarity=0.053  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      .+.-+.++..|..++..|++++|...|+-...+||. ++..|+++|.|+..+|+|.+||..|.+|+.++|+++.++++.|
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag  110 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA  110 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            455778899999999999999999999999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhh
Q 025537          223 ACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                      .|++.+|+.+.|.+.|+.++...
T Consensus       111 ~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        111 ECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999887

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.1e-15  Score=124.76  Aligned_cols=103  Identities=22%  Similarity=0.344  Sum_probs=97.7

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG---GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .|+.+++.||.+|+.++|..|+.+|+++|+.   ||+.++.+|+|||.|.+.+|+|..||.||.+|+.++|.+.+++++-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            4899999999999999999999999999986   6777899999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      |.|++.+.+|++|..+.+..++++-+
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            99999999999999999999887754

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.63  E-value=6.4e-15  Score=116.47  Aligned_cols=107  Identities=17%  Similarity=0.101  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhhCCCChHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSY-LMNDM--PQEALGDAMQAQVVSPDWPTAL  218 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~  218 (251)
                      +|.+++.|...|..+...|++++|+..|+++++++|+ ++.++.++|.++ ...|+  +++|+..++++++.+|+++.++
T Consensus        69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al  147 (198)
T PRK10370         69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL  147 (198)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence            6677899999999999999999999999999999998 999999999985 67787  5999999999999999999999


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          219 YLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       219 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +.+|.+++..|+|++|+.+|+++++++|.+.
T Consensus       148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        148 MLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            9999999999999999999999999999754

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.60  E-value=7.6e-15  Score=128.51  Aligned_cols=106  Identities=12%  Similarity=0.060  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+.-+..+.+.|..+-++|++++|+.+|..||+++|. .+.+|.|+|.+|..+|+...|+.+|.+||.++|.+++++.++
T Consensus       384 ~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL  462 (966)
T KOG4626|consen  384 FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL  462 (966)
T ss_pred             ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH
Confidence            4556788888999999999999999999999999998 889999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |.+|...|+..+|++.|+.||+++|+.
T Consensus       463 asi~kDsGni~~AI~sY~~aLklkPDf  489 (966)
T KOG4626|consen  463 ASIYKDSGNIPEAIQSYRTALKLKPDF  489 (966)
T ss_pred             HHHhhccCCcHHHHHHHHHHHccCCCC
Confidence            999999999999999999999999874

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.59  E-value=8.8e-15  Score=128.09  Aligned_cols=115  Identities=10%  Similarity=0.007  Sum_probs=103.4

Q ss_pred             hhhhhhhhHH-HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537          132 NELSFQMWTS-QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV  210 (251)
Q Consensus       132 ~~~~~~~~~~-~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  210 (251)
                      .+-.+..+.. .+..++.+.+.|+.+...|.+++|+.+|.+|++..|. .+.+++|+|.+|.++|++++|+..|+.||++
T Consensus       339 a~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI  417 (966)
T KOG4626|consen  339 AVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI  417 (966)
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence            3333433333 5677899999999999999999999999999999998 9999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          211 SPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       211 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      +|.++++|.++|..|-.+|+..+|+++|.+||.++|-
T Consensus       418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt  454 (966)
T KOG4626|consen  418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT  454 (966)
T ss_pred             CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence            9999999999999999999999999999999999995

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=5.3e-15  Score=123.93  Aligned_cols=106  Identities=23%  Similarity=0.374  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM---VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL  218 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  218 (251)
                      .+..-+.+++.||.+|++|+|.+|.++|+.||.++|+   .++.+|.|||.++.++|+..+||.+|+.|+.++|.+.+++
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal  324 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL  324 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence            3456778999999999999999999999999999996   2577899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          219 YLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       219 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      .++|.|+..+++|++|.++|++|+++.-.
T Consensus       325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  325 LRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999987644

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.58  E-value=2.7e-14  Score=131.62  Aligned_cols=101  Identities=26%  Similarity=0.334  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      ..+..++++|+.+|+.|+|++|+.+|+++|++.|+  +.+|.|+|.||..+|+|++|+.+|.+|++++|+++++|+++|.
T Consensus       125 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~  202 (615)
T TIGR00990       125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD--PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRAN  202 (615)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            45788999999999999999999999999999985  6789999999999999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhh
Q 025537          224 CLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      +|..+|+|++|+.+|..++.+++
T Consensus       203 a~~~lg~~~eA~~~~~~~~~~~~  225 (615)
T TIGR00990       203 AYDGLGKYADALLDLTASCIIDG  225 (615)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999988876655

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.57  E-value=1.2e-14  Score=95.08  Aligned_cols=67  Identities=18%  Similarity=0.204  Sum_probs=56.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhhh
Q 025537          180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLG-MENDARETLKDGTNLEA  246 (251)
Q Consensus       180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~l~P  246 (251)
                      ++..|.++|.+++..|+|++|+.+|++|++++|+++.+|+++|.++..+| ++++|+++|+++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            67788888888888888888888888888888888888888888888888 68888888888888887

...

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=2.8e-14  Score=111.81  Aligned_cols=99  Identities=23%  Similarity=0.304  Sum_probs=95.3

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      ++.++++|+.+|..++|..||.+|.+||.++|. .+..|-|++.||+++++|+.+..+|.+|++++|+.++++|.+|.++
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~   88 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL   88 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            678899999999999999999999999999998 8999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhhh
Q 025537          226 FSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~  245 (251)
                      .....|++|+..+.+|..+-
T Consensus        89 l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   89 LQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HhhccccHHHHHHHHHHHHH
Confidence            99999999999999996653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.52  E-value=5.9e-14  Score=115.44  Aligned_cols=107  Identities=18%  Similarity=0.228  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+.+++.+.+.|+.++..|+|..|+..|..||+.||+ +..+++.||.+|+.+|+-+.|+.++.++|++.|++..+...+
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR  112 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR  112 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence            5677999999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |.++.++|++++|..+|+++|.-+|++.
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~~  140 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSNG  140 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence            9999999999999999999999999754

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.52  E-value=2.7e-13  Score=97.90  Aligned_cols=103  Identities=18%  Similarity=0.171  Sum_probs=95.6

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALY  219 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~  219 (251)
                      +..++..|..+++.|+|++|+..|.++++..|+ +   ..+++.+|.+++..|++++|+..+++++..+|++   +.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence            456789999999999999999999999999886 4   5789999999999999999999999999999886   68899


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          220 LQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       220 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .+|.++..+|++++|...|+++++..|++.
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence            999999999999999999999999999864

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.52  E-value=1.8e-13  Score=126.08  Aligned_cols=105  Identities=17%  Similarity=0.146  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      +..+..+...|..++..|++++|+..|+++++++|. +...|.++|.++..+|++++|+.+++++++++|+++.+|+.+|
T Consensus       328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  406 (615)
T TIGR00990       328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA  406 (615)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            345566777777777777777777777777777776 7777777777777777777777777777777777777777777


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          223 ACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+++.+|++++|+.+|+++++++|++
T Consensus       407 ~~~~~~g~~~~A~~~~~kal~l~P~~  432 (615)
T TIGR00990       407 QLHFIKGEFAQAGKDYQKSIDLDPDF  432 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCccC
Confidence            77777777777777777777777764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.51  E-value=4.4e-14  Score=92.43  Aligned_cols=67  Identities=21%  Similarity=0.278  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND-MPQEALGDAMQAQVVSP  212 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p  212 (251)
                      +|..+...|..++..|+|++|+.+|+++|+++|+ ++.+|+++|.+++.+| ++.+|+.++++|++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4788999999999999999999999999999998 9999999999999999 79999999999999998

...

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=1.4e-13  Score=117.71  Aligned_cols=102  Identities=17%  Similarity=0.218  Sum_probs=98.9

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      ++.+...|..+|-.|++-.|...|+++|+++|. +...|..||.+|+...+..+-..+|++|..+||.++..||.+|+++
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~  404 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR  404 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence            789999999999999999999999999999998 7778999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhc
Q 025537          226 FSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +-+++|++|+.+|++|++|+|++
T Consensus       405 flL~q~e~A~aDF~Kai~L~pe~  427 (606)
T KOG0547|consen  405 FLLQQYEEAIADFQKAISLDPEN  427 (606)
T ss_pred             HHHHHHHHHHHHHHHHhhcChhh
Confidence            99999999999999999999986

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=2e-13  Score=107.51  Aligned_cols=106  Identities=16%  Similarity=0.168  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc--------CCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG--------GTM---------VSPTVYARRCLSYLMNDMPQEALGDAM  205 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~---------~~~~~~~~~a~~~~~~~~~~~A~~~~~  205 (251)
                      ......+.++||.+|+.|+|.+|...|..||-.        .|.         ....++.|.++|++..|+|.++++.|+
T Consensus       175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s  254 (329)
T KOG0545|consen  175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS  254 (329)
T ss_pred             hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence            345678889999999999999999999999832        343         145689999999999999999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          206 QAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       206 ~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ..+...|.+.+|||++|.++...-+.++|..+|.++|+++|.-
T Consensus       255 eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  255 EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            9999999999999999999999999999999999999999963

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.49  E-value=5.5e-13  Score=90.90  Aligned_cols=99  Identities=20%  Similarity=0.306  Sum_probs=94.2

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  227 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  227 (251)
                      .+...|..++..|++++|+..+.++++..|. +..++..+|.++...+++++|+..+++++...|.+..+++.+|.++..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence            3668899999999999999999999999998 889999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhhhh
Q 025537          228 LGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       228 ~~~~~~A~~~~~~al~l~P~  247 (251)
                      .|++++|...+.++++++|+
T Consensus        81 ~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          81 LGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHhHHHHHHHHHHHHccCCC
Confidence            99999999999999999884

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.49  E-value=1.9e-14  Score=123.04  Aligned_cols=103  Identities=23%  Similarity=0.296  Sum_probs=99.8

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      |..++.+++.+|..+.|+.|+..|++||+++|+ ++.+|.+|+.++++.++|..|+.|+.+||+++|.+.++|+++|.+.
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            677889999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          226 FSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ..+++|.+|+.+|++...+.|++.
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pnd~  106 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPNDP  106 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcCcH
Confidence            999999999999999999999863

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.47  E-value=1.6e-12  Score=100.69  Aligned_cols=107  Identities=20%  Similarity=0.196  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY  219 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  219 (251)
                      ....+..++..|..+...|+|++|+.+|.++++..|+.  ...++.++|.++..+|++++|+..+.+++.+.|+++.+++
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            45668889999999999999999999999999887641  2578999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCC--------------HHHHHHHHHHHHhhhhhc
Q 025537          220 LQAACLFSLGM--------------ENDARETLKDGTNLEAKK  248 (251)
Q Consensus       220 ~~g~~~~~~~~--------------~~~A~~~~~~al~l~P~~  248 (251)
                      .+|.++..+|+              +++|++.++++++++|++
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99999999998              788999999999999985

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.47  E-value=1.3e-13  Score=119.88  Aligned_cols=104  Identities=15%  Similarity=0.212  Sum_probs=98.8

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      +++...-+|..|.-.|+|++|+.+|+.||..+|. +..+|+.+|.++..-.+..+||..|++|+++.|.++.++|++|.+
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS  507 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS  507 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence            3566668899999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +..+|.|+||..+|-.||.+.++..
T Consensus       508 ~mNlG~ykEA~~hlL~AL~mq~ks~  532 (579)
T KOG1125|consen  508 CMNLGAYKEAVKHLLEALSMQRKSR  532 (579)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhhccc
Confidence            9999999999999999999999844

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.46  E-value=1.4e-12  Score=109.68  Aligned_cols=99  Identities=15%  Similarity=0.066  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      +|..+..+...|..+...|+|++|+..|+++++++|+ +..+|.++|.+++..|++++|+.+|+++++++|+++...+..
T Consensus        94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~  172 (296)
T PRK11189         94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL  172 (296)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            5667889999999999999999999999999999998 999999999999999999999999999999888775311111


Q ss_pred             HHHHHhCCCHHHHHHHHHHHH
Q 025537          222 AACLFSLGMENDARETLKDGT  242 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al  242 (251)
                       ......+++++|+..|.+++
T Consensus       173 -~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        173 -YLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             -HHHHccCCHHHHHHHHHHHH
Confidence             12223445555555554443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=5.8e-14  Score=123.73  Aligned_cols=107  Identities=15%  Similarity=0.102  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ++..++.|...||.+.-+++++.||.+|.+||.+||. .+-+|-.+|.=+....+|+.|...|++||..+|.+.-|||.+
T Consensus       417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl  495 (638)
T KOG1126|consen  417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL  495 (638)
T ss_pred             CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence            4556889999999999999999999999999999997 888888888888888888999999999999999888899999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |.+|.++++++.|.-+|++|++++|.+.
T Consensus       496 G~vy~Kqek~e~Ae~~fqkA~~INP~ns  523 (638)
T KOG1126|consen  496 GTVYLKQEKLEFAEFHFQKAVEINPSNS  523 (638)
T ss_pred             hhheeccchhhHHHHHHHhhhcCCccch
Confidence            9999999999999999999999888764

>PRK12370 invasion protein regulator; Provisional

Probab=99.45  E-value=9e-13  Score=119.92  Aligned_cols=105  Identities=13%  Similarity=0.040  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHhHHHh---------hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 025537          143 MQETLNSKKHGDTAFR---------AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD  213 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  213 (251)
                      |..+..+...|..++.         .+++++|+..+++|++++|+ ++.+|..+|.++...|++++|+..|++|++++|+
T Consensus       292 P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~  370 (553)
T PRK12370        292 PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI  370 (553)
T ss_pred             CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            3445555555554442         23477788888888888877 7777777888877788888888888888888888


Q ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          214 WPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       214 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ++.+|+.+|.++...|++++|+..|+++++++|.+
T Consensus       371 ~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~  405 (553)
T PRK12370        371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR  405 (553)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            88888888888888888888888888888887764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.44  E-value=1.5e-12  Score=124.20  Aligned_cols=103  Identities=8%  Similarity=-0.099  Sum_probs=99.8

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      +..+...|..+.+.|++++|+..|.++++++|+ ++.+++++|.++..+|++++|+..+.+|++++|+++.+++++|.++
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al  687 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN  687 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            678889999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          226 FSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ..+|++++|+.+|+++++++|++-
T Consensus       688 ~~lGd~~eA~~~l~~Al~l~P~~a  711 (987)
T PRK09782        688 QRLDDMAATQHYARLVIDDIDNQA  711 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCc
Confidence            999999999999999999999863

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.43  E-value=3.2e-13  Score=91.93  Aligned_cols=82  Identities=21%  Similarity=0.346  Sum_probs=74.3

Q ss_pred             hcCHHHHHHHHHHHHccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHH
Q 025537          159 AKDFSTAIDCYTQFIDGGTMV-SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARET  237 (251)
Q Consensus       159 ~~~~~~A~~~~~~al~~~p~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~  237 (251)
                      +|+|+.|+..|+++++.+|.. +...++++|.||+++|+|++|+..+++ ++.+|.++..++.+|.+++.+|+|++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            689999999999999999852 467788899999999999999999999 999999999999999999999999999999


Q ss_pred             HHHH
Q 025537          238 LKDG  241 (251)
Q Consensus       238 ~~~a  241 (251)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>PRK12370 invasion protein regulator; Provisional

Probab=99.43  E-value=3.5e-12  Score=116.08  Aligned_cols=103  Identities=11%  Similarity=-0.049  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      +|..+..+...|..+...|++++|+..|++|++++|+ ++.+|+++|.++..+|++++|+..+++|++++|.++.+++.+
T Consensus       334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~  412 (553)
T PRK12370        334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK  412 (553)
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence            6677888999999999999999999999999999998 999999999999999999999999999999999999888888


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhh
Q 025537          222 AACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                      +.+++..|++++|+..++++++.+
T Consensus       413 ~~~~~~~g~~eeA~~~~~~~l~~~  436 (553)
T PRK12370        413 LWITYYHTGIDDAIRLGDELRSQH  436 (553)
T ss_pred             HHHHHhccCHHHHHHHHHHHHHhc
Confidence            888999999999999999999875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.40  E-value=8.7e-12  Score=96.16  Aligned_cols=105  Identities=20%  Similarity=0.140  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ..+..+...|..++..|+|++|+..|.+++.+.|+.  .+.+|.++|.++..+|++++|+..+.+|+.++|.+..+++.+
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l  112 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence            457888999999999999999999999999886641  346899999999999999999999999999999999999999


Q ss_pred             HHHHH-------hCCCHH-------HHHHHHHHHHhhhhhc
Q 025537          222 AACLF-------SLGMEN-------DARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~-------~~~~~~-------~A~~~~~~al~l~P~~  248 (251)
                      |.++.       .+|+++       +|+..|++++.++|++
T Consensus       113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            99999       777766       6666777788888864

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.39  E-value=2.9e-12  Score=96.27  Aligned_cols=87  Identities=15%  Similarity=0.007  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      +|..+..+..+|..+...|+|++|+..|+++++++|. ++.+++++|.++..+|++++|+..|.+|++++|+++..+..+
T Consensus        54 ~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~  132 (144)
T PRK15359         54 QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR  132 (144)
T ss_pred             CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            6677899999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCC
Q 025537          222 AACLFSLG  229 (251)
Q Consensus       222 g~~~~~~~  229 (251)
                      |.+...++
T Consensus       133 ~~~~~~l~  140 (144)
T PRK15359        133 QNAQIMVD  140 (144)
T ss_pred             HHHHHHHH
Confidence            99876543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.39  E-value=7.8e-12  Score=97.88  Aligned_cols=115  Identities=14%  Similarity=0.054  Sum_probs=97.0

Q ss_pred             hhhhhhHH-HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--
Q 025537          134 LSFQMWTS-QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV--  210 (251)
Q Consensus       134 ~~~~~~~~-~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--  210 (251)
                      ..++...+ +|.....+.-++-.|-+.|+.+.|-+.|++|++++|+ +.++++|-|-.+..+|+|++|...|++|+..  
T Consensus        56 ~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~  134 (250)
T COG3063          56 KNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEEAMQQFERALADPA  134 (250)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCC
Confidence            33444343 7777888888999999999999999999999999998 9999999999999999999999999998873  


Q ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          211 SPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       211 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .|..+..|-++|.|..+.|+++.|...|+++|+++|++-
T Consensus       135 Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063         135 YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence            445578899999999999999999999999999999863

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.38  E-value=1.9e-11  Score=87.56  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----hHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW----PTAL  218 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~  218 (251)
                      ++....+..+|..+...|+.+.|++.|.++|.+.|. ++.+|+||+.++..+|+.++|+.+.++|+++.-+.    ..+|
T Consensus        40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~  118 (175)
T KOG4555|consen   40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAF  118 (175)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHH
Confidence            344667778899999999999999999999999998 99999999999999999999999999999997655    4678


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          219 YLQAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       219 ~~~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      ..+|.+|..+|+-+.|..+|+.+-++..
T Consensus       119 vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  119 VQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            9999999999999999999999987754

>PLN02789 farnesyltranstransferase

Probab=99.37  E-value=2.2e-11  Score=102.87  Aligned_cols=112  Identities=10%  Similarity=-0.053  Sum_probs=103.2

Q ss_pred             hhhHHHHHHHHHHHHHHhHHHhhc-CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhCCC
Q 025537          137 QMWTSQMQETLNSKKHGDTAFRAK-DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMP--QEALGDAMQAQVVSPD  213 (251)
Q Consensus       137 ~~~~~~~~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~p~  213 (251)
                      +.+.-+|.....+..+|..+...| ++++|+.+++++++.+|+ +..+|++|+.++.++|+.  ++++..++++++++|+
T Consensus        62 ~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk  140 (320)
T PLN02789         62 DVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK  140 (320)
T ss_pred             HHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc
Confidence            334447778889999999999988 689999999999999999 999999999999999974  7899999999999999


Q ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          214 WPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       214 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +..+|+.+|.++..+|+|++|++++.++|++||+|.
T Consensus       141 Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~  176 (320)
T PLN02789        141 NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN  176 (320)
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence            999999999999999999999999999999999874

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.36  E-value=8.7e-12  Score=101.25  Aligned_cols=103  Identities=17%  Similarity=0.225  Sum_probs=95.7

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH---HHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP---TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT---ALY  219 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  219 (251)
                      +..++..|..++..|+|++|+..|++++...|. ++   .+++.+|.+++.+|++++|+..++++++.+|+++.   +++
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            677889999999999999999999999999997 54   68899999999999999999999999999998876   799


Q ss_pred             HHHHHHHhC--------CCHHHHHHHHHHHHhhhhhcc
Q 025537          220 LQAACLFSL--------GMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       220 ~~g~~~~~~--------~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .+|.+++..        |++++|+..|+++++.+|++.
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  149 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE  149 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence            999999987        899999999999999999864

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.35  E-value=2.2e-11  Score=112.81  Aligned_cols=106  Identities=15%  Similarity=0.008  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .|..+..+...|..++..|++++|+..|+++++++|+ ++.++.++|.++..+|++++|+..+++++..+|+++.+++.+
T Consensus       280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~  358 (656)
T PRK15174        280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA  358 (656)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            4555677778888888888888888888888888887 788888888888888888888888888888888887777777


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |.++..+|++++|+..|+++++++|++
T Consensus       359 a~al~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        359 AAALLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence            888888888888888888888888774

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.35  E-value=1.5e-11  Score=113.36  Aligned_cols=103  Identities=7%  Similarity=-0.047  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      ..++.+...|......|.+++|...+..+++++|+ +..++.+++.++.+++++++|+..+++++..+|+++.+++.+|.
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~  162 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK  162 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            33556666666666666666666666666666665 66666666666666666666666666666666666666666666


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          224 CLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ++.++|+|++|...|++++..+|+
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~p~  186 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQHPE  186 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCC
Confidence            666666666666666666665554

>PRK15331 chaperone protein SicA; Provisional

Probab=99.35  E-value=1.4e-11  Score=92.46  Aligned_cols=102  Identities=9%  Similarity=0.014  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      +.-+..+..|-.++..|++++|...|+-..-++|. ++..|+.+|.|+..+++|++|+..|..|..+++++|...|+.|.
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq  113 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ  113 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence            45677889999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          224 CLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ||..+|+.+.|+.+|..+++ .|+
T Consensus       114 C~l~l~~~~~A~~~f~~a~~-~~~  136 (165)
T PRK15331        114 CQLLMRKAAKARQCFELVNE-RTE  136 (165)
T ss_pred             HHHHhCCHHHHHHHHHHHHh-Ccc
Confidence            99999999999999999987 343

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.34  E-value=2.8e-11  Score=96.66  Aligned_cols=106  Identities=12%  Similarity=0.065  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS--PDWPTALY  219 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~  219 (251)
                      .+..+..+...|..++..|++++|+..|.++++..|. +..++.++|.++...|++++|+..+.+++...  |.....++
T Consensus        61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  139 (234)
T TIGR02521        61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLE  139 (234)
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHH
Confidence            4566788899999999999999999999999999998 89999999999999999999999999999864  56678899


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          220 LQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       220 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+|.++...|++++|...|.++++.+|++
T Consensus       140 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521       140 NAGLCALKAGDFDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            99999999999999999999999999875

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.34  E-value=4.1e-12  Score=81.98  Aligned_cols=63  Identities=22%  Similarity=0.245  Sum_probs=36.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          186 RRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       186 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+|..++..|+|++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            345555666666666666666666666666666666666666666666666666666666553

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.33  E-value=7.4e-12  Score=80.77  Aligned_cols=65  Identities=18%  Similarity=0.210  Sum_probs=60.6

Q ss_pred             HHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Q 025537          150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP  215 (251)
Q Consensus       150 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  215 (251)
                      +.+|..++..|+|++|+..|+++++.+|+ ++.+|+.+|.++..+|++++|+..|+++++++|++|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            36799999999999999999999999998 999999999999999999999999999999999986

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.33  E-value=2.3e-11  Score=112.18  Aligned_cols=110  Identities=13%  Similarity=0.024  Sum_probs=102.7

Q ss_pred             hhhhHH-HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537          136 FQMWTS-QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW  214 (251)
Q Consensus       136 ~~~~~~-~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  214 (251)
                      ++...+ .|+.+.+....+..+++.+++++|+..++++++.+|+ ++.+++.+|.++.++|++++|+..|++++..+|++
T Consensus       109 l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~  187 (694)
T PRK15179        109 WRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQHPEF  187 (694)
T ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence            333333 6788999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          215 PTALYLQAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      +.++..+|.++..+|+.++|...|++|++..-
T Consensus       188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999997643

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=2e-11  Score=104.09  Aligned_cols=110  Identities=16%  Similarity=0.078  Sum_probs=96.0

Q ss_pred             hhhhHH-HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537          136 FQMWTS-QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW  214 (251)
Q Consensus       136 ~~~~~~-~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  214 (251)
                      |+.... ++.....|.-.|-.+...++-..|++.|++|++.+|. +..+|+.+|++|--++.+.=|+-+|++|+.+.|++
T Consensus       353 FkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD  431 (559)
T KOG1155|consen  353 FKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND  431 (559)
T ss_pred             HHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence            444444 5566777888899999999999999999999999998 89999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          215 PTALYLQAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      +..|.-+|.||.++++.++|+++|++++...-
T Consensus       432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~d  463 (559)
T KOG1155|consen  432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGD  463 (559)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999987653

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=2.2e-12  Score=113.86  Aligned_cols=100  Identities=13%  Similarity=0.127  Sum_probs=52.3

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  226 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  226 (251)
                      =+|...|-.+....+|+.|..+|++||..+|. ...+|+.+|.+|+++++++.|.-.|++|+.++|.+.-.....|.++.
T Consensus       456 YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~  534 (638)
T KOG1126|consen  456 YAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQH  534 (638)
T ss_pred             hhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHH
Confidence            34444455555555555555555555555554 55555555555555555555555555555555555555555555555


Q ss_pred             hCCCHHHHHHHHHHHHhhhhh
Q 025537          227 SLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       227 ~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ++|+.|+|+..|++|+-+||.
T Consensus       535 ~~k~~d~AL~~~~~A~~ld~k  555 (638)
T KOG1126|consen  535 QLKRKDKALQLYEKAIHLDPK  555 (638)
T ss_pred             HhhhhhHHHHHHHHHHhcCCC
Confidence            555555555555555555554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.32  E-value=1.9e-11  Score=96.71  Aligned_cols=90  Identities=17%  Similarity=0.140  Sum_probs=85.1

Q ss_pred             hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HhCCC--HHHHH
Q 025537          159 AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL-FSLGM--ENDAR  235 (251)
Q Consensus       159 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~-~~~~~--~~~A~  235 (251)
                      .++.++++..+.++++.+|+ +..+|..+|.+|+.+|++++|+..|.+|++++|+++.+++.+|.++ ...|+  +++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            67889999999999999999 9999999999999999999999999999999999999999999985 77788  59999


Q ss_pred             HHHHHHHhhhhhcc
Q 025537          236 ETLKDGTNLEAKKN  249 (251)
Q Consensus       236 ~~~~~al~l~P~~~  249 (251)
                      ..++++++++|++.
T Consensus       131 ~~l~~al~~dP~~~  144 (198)
T PRK10370        131 EMIDKALALDANEV  144 (198)
T ss_pred             HHHHHHHHhCCCCh
Confidence            99999999999864

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.32  E-value=5e-11  Score=95.18  Aligned_cols=103  Identities=17%  Similarity=0.123  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG--TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .....+...|..++..|++++|+..|.++++..  |. ....+.++|.++...|++++|+..+.+++..+|+++.+++.+
T Consensus        97 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  175 (234)
T TIGR02521        97 NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ-PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL  175 (234)
T ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHH
Confidence            345677889999999999999999999999864  33 567899999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      |.++...|++++|...+++++++.|.
T Consensus       176 a~~~~~~~~~~~A~~~~~~~~~~~~~  201 (234)
T TIGR02521       176 AELYYLRGQYKDARAYLERYQQTYNQ  201 (234)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999998664

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.31  E-value=4.4e-11  Score=98.29  Aligned_cols=102  Identities=10%  Similarity=-0.018  Sum_probs=91.6

Q ss_pred             HHHHHHHhHH-HhhcCHHHHHHHHHHHHccCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---ChHHHH
Q 025537          147 LNSKKHGDTA-FRAKDFSTAIDCYTQFIDGGTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD---WPTALY  219 (251)
Q Consensus       147 ~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~  219 (251)
                      ...++.+..+ ++.|+|++|+..|++.++..|+ +   +.+++.+|.+|+..|+|++|+..|.+++...|+   .+++++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            3445666665 6679999999999999999997 4   579999999999999999999999999999887   489999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          220 LQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       220 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .+|.++..+|++++|...|+++++..|+..
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            999999999999999999999999999853

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.30  E-value=4.1e-11  Score=93.92  Aligned_cols=100  Identities=15%  Similarity=0.046  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG--TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY  219 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  219 (251)
                      ++.+.+.+.+-|-.++.+|+|++|...|++|+..-  |. -+..|-|+|.|.+++|+++.|..+++++++++|+++....
T Consensus        99 ~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~-~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l  177 (250)
T COG3063          99 APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGE-PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALL  177 (250)
T ss_pred             CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCC-cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH
Confidence            44455666666666666666666666666666432  12 3456666666666666666666666666666666666666


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHH
Q 025537          220 LQAACLFSLGMENDARETLKDGT  242 (251)
Q Consensus       220 ~~g~~~~~~~~~~~A~~~~~~al  242 (251)
                      .++..++..|+|-.|...+++..
T Consensus       178 ~~a~~~~~~~~y~~Ar~~~~~~~  200 (250)
T COG3063         178 ELARLHYKAGDYAPARLYLERYQ  200 (250)
T ss_pred             HHHHHHHhcccchHHHHHHHHHH
Confidence            66666666666666666665543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.30  E-value=3.4e-11  Score=111.62  Aligned_cols=105  Identities=10%  Similarity=0.087  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHH----HHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFST----AIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL  218 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  218 (251)
                      +..+..+...|..++..|++++    |+..|+++++++|+ +..++.++|.++..+|++++|+..+++++.++|+++.++
T Consensus       243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~  321 (656)
T PRK15174        243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR  321 (656)
T ss_pred             CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            4456677888999999999986    89999999999998 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          219 YLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       219 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +.+|.++..+|++++|+..|+++++.+|++
T Consensus       322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        322 AMYARALRQVGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999998875

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.29  E-value=5.8e-11  Score=94.67  Aligned_cols=104  Identities=15%  Similarity=0.036  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      +.+...+..+|...++.|+|.+|+..+.++..++|+ +..+|+.+|.+|.+.|++++|-..|.+|+++.|+.+....++|
T Consensus        97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg  175 (257)
T COG5010          97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG  175 (257)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence            444566677999999999999999999999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          223 ACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ..|+..|+++.|...+..+...-+.
T Consensus       176 ms~~L~gd~~~A~~lll~a~l~~~a  200 (257)
T COG5010         176 MSLLLRGDLEDAETLLLPAYLSPAA  200 (257)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCC
Confidence            9999999999999999998766553

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=2.9e-11  Score=103.04  Aligned_cols=100  Identities=10%  Similarity=0.012  Sum_probs=95.6

Q ss_pred             HHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhC
Q 025537          149 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSL  228 (251)
Q Consensus       149 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~  228 (251)
                      .--.||-|.-++++++|+.+|++|++++|. ...+|-..|.=|+.+++-..|+..|++|++++|.+..+||.+|++|..+
T Consensus       333 CCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim  411 (559)
T KOG1155|consen  333 CCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM  411 (559)
T ss_pred             eeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh
Confidence            335688899999999999999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhhhhcc
Q 025537          229 GMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       229 ~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +-..=|+-+|++|+++.|++.
T Consensus       412 ~Mh~YaLyYfqkA~~~kPnDs  432 (559)
T KOG1155|consen  412 KMHFYALYYFQKALELKPNDS  432 (559)
T ss_pred             cchHHHHHHHHHHHhcCCCch
Confidence            999999999999999999875

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=1e-10  Score=95.42  Aligned_cols=109  Identities=17%  Similarity=0.077  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCChH
Q 025537          140 TSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND---MPQEALGDAMQAQVVSPDWPT  216 (251)
Q Consensus       140 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~  216 (251)
                      .++|.+++.|...|..|+..|++..|...|.+|+++.|+ |+..+..+|.+++...   .-.++...+++|+++||+++.
T Consensus       150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir  228 (287)
T COG4235         150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR  228 (287)
T ss_pred             HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence            347788999999999999999999999999999999998 9999999999988754   458899999999999999999


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          217 ALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       217 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +.+.+|..+++.|+|.+|...++..+.+.|.+.
T Consensus       229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            999999999999999999999999999999764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.23  E-value=1.1e-10  Score=111.51  Aligned_cols=95  Identities=15%  Similarity=0.110  Sum_probs=88.0

Q ss_pred             HHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCH
Q 025537          152 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGME  231 (251)
Q Consensus       152 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~  231 (251)
                      .+......|++++|+..|.++++++|+  ..+|.++|.++.++|++++|+..+.+++.++|+++.+++.+|.++...|++
T Consensus       582 La~~l~~~Gr~~eAl~~~~~AL~l~P~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~  659 (987)
T PRK09782        582 LHAQRYIPGQPELALNDLTRSLNIAPS--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI  659 (987)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            344445559999999999999999994  789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhc
Q 025537          232 NDARETLKDGTNLEAKK  248 (251)
Q Consensus       232 ~~A~~~~~~al~l~P~~  248 (251)
                      ++|+..|+++++++|++
T Consensus       660 eeAi~~l~~AL~l~P~~  676 (987)
T PRK09782        660 AQSREMLERAHKGLPDD  676 (987)
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999999975

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.22  E-value=9.5e-12  Score=102.47  Aligned_cols=105  Identities=23%  Similarity=0.284  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ....+...+-++..++..|.+++||+.|+.||.++|. ++.+|.+|+.++++++++..|+.+|..|++++|+.++.|-.+
T Consensus       110 ~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr  188 (377)
T KOG1308|consen  110 MMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR  188 (377)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchh
Confidence            4455677888889999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      |.+...+|++++|..++..+++++-+
T Consensus       189 g~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  189 GYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hHHHHHhhchHHHHHHHHHHHhcccc
Confidence            99999999999999999999988754

>PLN02789 farnesyltranstransferase

Probab=99.21  E-value=1.7e-10  Score=97.53  Aligned_cols=110  Identities=6%  Similarity=-0.100  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHhHHHhhcCH--HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Q 025537          140 TSQMQETLNSKKHGDTAFRAKDF--STAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTA  217 (251)
Q Consensus       140 ~~~~~~a~~~~~~g~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  217 (251)
                      ..+++..+.+..+|..+.+.|++  ++++.+++++|+.+|+ |..+|++|+.++..+|+|++|+++|.++|+.+|++..+
T Consensus       100 ~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA  178 (320)
T PLN02789        100 EDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA  178 (320)
T ss_pred             HHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence            34666777888888888777764  7889999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC---CCH----HHHHHHHHHHHhhhhhccC
Q 025537          218 LYLQAACLFSL---GME----NDARETLKDGTNLEAKKNK  250 (251)
Q Consensus       218 ~~~~g~~~~~~---~~~----~~A~~~~~~al~l~P~~~~  250 (251)
                      |+.+|.++..+   |.+    ++++.+..++|+++|+|..
T Consensus       179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S  218 (320)
T PLN02789        179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES  218 (320)
T ss_pred             HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC
Confidence            99999999877   333    5788888899999999863

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.21  E-value=1.6e-10  Score=113.66  Aligned_cols=107  Identities=10%  Similarity=-0.001  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH--------------HHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT--------------VYARRCLSYLMNDMPQEALGDAMQA  207 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~a  207 (251)
                      .+..+..+...|..+++.|++++|+.+|+++++.+|+ +..              ....+|.++...|++++|+..|+++
T Consensus       299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A  377 (1157)
T PRK11447        299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA  377 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5667888999999999999999999999999999986 432              2245588899999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          208 QVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       208 l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +.++|+++.+++.+|.++...|++++|+..|+++++++|++.
T Consensus       378 l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~  419 (1157)
T PRK11447        378 RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT  419 (1157)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999999999999999853

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=3.6e-11  Score=104.61  Aligned_cols=108  Identities=13%  Similarity=0.106  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGT----MV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP  215 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  215 (251)
                      .|.++-.+.+.|...|..+.|.+|+.+|..++..-+    ..  -...+.|+|.++.+++.|.+||..+++||.+.|.++
T Consensus       410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~  489 (611)
T KOG1173|consen  410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA  489 (611)
T ss_pred             CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch
Confidence            455677888999999999999999999999994322    10  245689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          216 TALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .+|-..|.+|..+|+++.|+.+|.++|.++|+++
T Consensus       490 ~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~  523 (611)
T KOG1173|consen  490 STHASIGYIYHLLGNLDKAIDHFHKALALKPDNI  523 (611)
T ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence            9999999999999999999999999999999874

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.19  E-value=3.1e-10  Score=107.12  Aligned_cols=106  Identities=12%  Similarity=0.011  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+...|..+...|++++|+..|+++++++|. ++.++..++.++...|++++|+..++++++.+|+++. ++.+
T Consensus        45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l  122 (765)
T PRK10049         45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL  122 (765)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH
Confidence            3345667899999999999999999999999999998 9999999999999999999999999999999999999 9999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |.++...|++++|+..|+++++++|++.
T Consensus       123 a~~l~~~g~~~~Al~~l~~al~~~P~~~  150 (765)
T PRK10049        123 AYVYKRAGRHWDELRAMTQALPRAPQTQ  150 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999863

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.19  E-value=5.6e-11  Score=99.12  Aligned_cols=104  Identities=16%  Similarity=0.075  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      .++..+...|..+.+.|++++|+.+|+++++++|+ +..+...++.++...|+++++...+....+..|+++..+..+|.
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~  222 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA  222 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            45778889999999999999999999999999998 99999999999999999999888888888888899999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          224 CLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ++..+|++++|+..|+++++.+|++
T Consensus       223 ~~~~lg~~~~Al~~~~~~~~~~p~d  247 (280)
T PF13429_consen  223 AYLQLGRYEEALEYLEKALKLNPDD  247 (280)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred             Hhccccccccccccccccccccccc
Confidence            9999999999999999999999975

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.19  E-value=7.5e-10  Score=81.40  Aligned_cols=104  Identities=10%  Similarity=0.087  Sum_probs=94.7

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYL  220 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  220 (251)
                      +..++..|...++.|+|.+|+..|+.....-|.  ....+...++.+|++.++|.+|+..+++-|+++|++   +.++|.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            567889999999999999999999998888774  145788999999999999999999999999999988   578999


Q ss_pred             HHHHHHhCCC---------------HHHHHHHHHHHHhhhhhcc
Q 025537          221 QAACLFSLGM---------------ENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       221 ~g~~~~~~~~---------------~~~A~~~~~~al~l~P~~~  249 (251)
                      +|.+++.+..               ..+|...|++.++.-|+++
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            9999999987               9999999999999999864

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.18  E-value=1.6e-10  Score=85.55  Aligned_cols=81  Identities=12%  Similarity=-0.001  Sum_probs=77.7

Q ss_pred             HHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          167 DCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       167 ~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      ..|.++++.+|+ +..+.+.+|.+++..|++++|+..+++++..+|+++.+|+.+|.++..+|++++|...|+++++++|
T Consensus         4 ~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552         4 ATLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             hhHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            468899999998 8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hc
Q 025537          247 KK  248 (251)
Q Consensus       247 ~~  248 (251)
                      ++
T Consensus        83 ~~   84 (135)
T TIGR02552        83 DD   84 (135)
T ss_pred             CC
Confidence            75

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.17  E-value=7e-10  Score=99.75  Aligned_cols=106  Identities=14%  Similarity=0.011  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCChHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALG--DAMQAQVVSPDWPTALY  219 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~  219 (251)
                      .+.-+..++..|..+..+|++.+|.+.|..|+.++|+ .......+|.++.+.|+..-|..  ....|++++|.++++||
T Consensus       680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~  758 (799)
T KOG4162|consen  680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY  758 (799)
T ss_pred             chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence            4566889999999999999999999999999999998 99999999999999998877777  99999999999999999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          220 LQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       220 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+|.++..+|+.++|..+|..|++|++.+
T Consensus       759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  759 YLGEVFKKLGDSKQAAECFQAALQLEESN  787 (799)
T ss_pred             HHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence            99999999999999999999999998864

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.16  E-value=1.8e-10  Score=99.26  Aligned_cols=70  Identities=9%  Similarity=0.055  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 025537          141 SQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQAQVVS  211 (251)
Q Consensus       141 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~~~  211 (251)
                      .++..++.+.++|..++..|+|++|+..|++||+++|+ +..   +|+|+|.||..+|++++|+.++.+|+++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            36778999999999999999999999999999999998 775   59999999999999999999999999983

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.16  E-value=3.9e-10  Score=110.90  Aligned_cols=106  Identities=15%  Similarity=0.075  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHH--------------------------------
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCL--------------------------------  189 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~--------------------------------  189 (251)
                      .+..+..+...|..+...|++++|+..|+++++.+|. +..++.+++.                                
T Consensus       381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l  459 (1157)
T PRK11447        381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL  459 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            3445667888999999999999999999999999997 7666554443                                


Q ss_pred             ----------HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          190 ----------SYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       190 ----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                                ++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++
T Consensus       460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~  528 (1157)
T PRK11447        460 QNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND  528 (1157)
T ss_pred             hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence                      44567999999999999999999999999999999999999999999999999998875

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.15  E-value=6e-10  Score=105.72  Aligned_cols=103  Identities=17%  Similarity=0.057  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      .+..+...|..++..|+|++|+..|+++++.+|. +..++..++.+++..|++++|+..++++++.+|.++.+++.+|.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  202 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPR-SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDL  202 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            3445555666666666666666666666666665 555666666666666666666666666666666666666666666


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +...|++++|...|+++++++|++
T Consensus       203 ~~~~g~~~~A~~~~~~a~~~~p~~  226 (899)
T TIGR02917       203 LLSLGNIELALAAYRKAIALRPNN  226 (899)
T ss_pred             HHhcCCHHHHHHHHHHHHhhCCCC
Confidence            666666666666666666665543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.15  E-value=4.8e-10  Score=97.97  Aligned_cols=118  Identities=15%  Similarity=0.050  Sum_probs=99.9

Q ss_pred             hhhhhhhhhHH-HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH---------------------------
Q 025537          131 ANELSFQMWTS-QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---------------------------  182 (251)
Q Consensus       131 ~~~~~~~~~~~-~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---------------------------  182 (251)
                      +..+.|+.... +|+.+++|..+|......++=..||..+.+|++++|+ |..                           
T Consensus       303 ~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~~L~~Wi~  381 (579)
T KOG1125|consen  303 EAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALKMLDKWIR  381 (579)
T ss_pred             HHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            34566666554 8899999999999999999999999999999988886 433                           


Q ss_pred             --------------------------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 025537          183 --------------------------------------------------VYARRCLSYLMNDMPQEALGDAMQAQVVSP  212 (251)
Q Consensus       183 --------------------------------------------------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  212 (251)
                                                                        +...+|..|+..|+|++|+.+|+.||..+|
T Consensus       382 ~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P  461 (579)
T KOG1125|consen  382 NKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP  461 (579)
T ss_pred             hCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC
Confidence                                                              345566778888899999999999999999


Q ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          213 DWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       213 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ++...|.++|..+..-.+.++|+..|.+|++|.|+..
T Consensus       462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV  498 (579)
T KOG1125|consen  462 NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV  498 (579)
T ss_pred             chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee
Confidence            9999999999999999999999999999999999753

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.14  E-value=2e-10  Score=93.38  Aligned_cols=90  Identities=13%  Similarity=0.074  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      +|.+|-.|-+++.+|.+.|.|+.|+.....||.+||. ...+|..+|.+|+.+|+|++|++.|++||+++|+|...+-++
T Consensus       111 ~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL  189 (304)
T KOG0553|consen  111 DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL  189 (304)
T ss_pred             CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence            5678899999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHH
Q 025537          222 AACLFSLGMEN  232 (251)
Q Consensus       222 g~~~~~~~~~~  232 (251)
                      ..+-..+++..
T Consensus       190 ~~Ae~~l~e~~  200 (304)
T KOG0553|consen  190 KIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHhcCCC
Confidence            99888887766

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.13  E-value=8.1e-10  Score=104.32  Aligned_cols=103  Identities=13%  Similarity=-0.013  Sum_probs=98.4

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      ...+...|..+...|++++|+..+++++...|+ +..++.++|.++...|++++|+..+++|+.++|+++.+++.+|.++
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a  437 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA  437 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence            345678899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          226 FSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ..+|++++|...++++++.+|++.
T Consensus       438 l~~~~~~~A~~~~~~ll~~~Pd~~  461 (765)
T PRK10049        438 LDLQEWRQMDVLTDDVVAREPQDP  461 (765)
T ss_pred             HHhCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999864

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.13  E-value=1.3e-09  Score=90.26  Aligned_cols=107  Identities=19%  Similarity=0.281  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+++-..+..+...++..|++.-||...++.|+..|. ++.+|..|+.||..-|+...||.+.+.|-++..++.+++|..
T Consensus       151 ~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yki  229 (504)
T KOG0624|consen  151 LIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKI  229 (504)
T ss_pred             hHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHH
Confidence            4455667778888899999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +..++..|+.+.++...++||++||+..
T Consensus       230 s~L~Y~vgd~~~sL~~iRECLKldpdHK  257 (504)
T KOG0624|consen  230 SQLLYTVGDAENSLKEIRECLKLDPDHK  257 (504)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence            9999999999999999999999999864

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.13  E-value=9.5e-10  Score=89.25  Aligned_cols=102  Identities=17%  Similarity=0.111  Sum_probs=91.3

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH---HHHHHHHHHHhc--------CCHHHHHHHHHHHHhhCCCC
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMN--------DMPQEALGDAMQAQVVSPDW  214 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~al~~~p~~  214 (251)
                      ...+...|..++..|++++|+..|+++++..|+ ++.   +++.+|.+++..        |++++|+..+++++..+|++
T Consensus        70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  148 (235)
T TIGR03302        70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS  148 (235)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence            467889999999999999999999999999997 554   789999999987        88999999999999999998


Q ss_pred             hHHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          215 PTAL-----------------YLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       215 ~~~~-----------------~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ..++                 +.+|..|+..|++.+|+..|+++++..|+.
T Consensus       149 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  199 (235)
T TIGR03302       149 EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT  199 (235)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence            6543                 467889999999999999999999998864

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.13  E-value=4.3e-10  Score=74.15  Aligned_cols=69  Identities=23%  Similarity=0.314  Sum_probs=56.3

Q ss_pred             HhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          153 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       153 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      ...+++.++|++|+.++++++.++|. ++.+|..+|.++..+|+|.+|+.+++++++.+|+++.+..-++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            35677888888888888888888887 8888888888888888888888888888888888877765554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.12  E-value=1.2e-09  Score=95.03  Aligned_cols=98  Identities=13%  Similarity=0.071  Sum_probs=65.6

Q ss_pred             HHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHh
Q 025537          149 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-PTALYLQAACLFS  227 (251)
Q Consensus       149 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~  227 (251)
                      +...|..++..|++++|+..|.++++.+|+ +..++..+|.++.+.|++++|+..+++++..+|++ ..++..++.+|..
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~  261 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA  261 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence            445566666667777777777777766665 66666666777777777777777777777666655 3455666667777


Q ss_pred             CCCHHHHHHHHHHHHhhhhh
Q 025537          228 LGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       228 ~~~~~~A~~~~~~al~l~P~  247 (251)
                      .|++++|+..++++++++|+
T Consensus       262 ~g~~~~A~~~l~~~~~~~p~  281 (389)
T PRK11788        262 LGDEAEGLEFLRRALEEYPG  281 (389)
T ss_pred             cCCHHHHHHHHHHHHHhCCC
Confidence            77777777777777666665

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.11  E-value=2.1e-10  Score=74.53  Aligned_cols=67  Identities=19%  Similarity=0.171  Sum_probs=56.1

Q ss_pred             HHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          156 AFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       156 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      +++.|+|++|+..|++++..+|+ +..++..+|.||++.|++++|...+++++..+|+++..+..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            35678899999999999999988 88888899999999999999999999999999988777766654

...

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.11  E-value=7.2e-10  Score=105.22  Aligned_cols=104  Identities=19%  Similarity=0.222  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      +.+...+...|..+...|++++|+..|+++++..|+ ++.++.+++.++...|+ .+|+..+++++.+.|+++..+..+|
T Consensus       767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~  844 (899)
T TIGR02917       767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG  844 (899)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence            445678888999999999999999999999999998 99999999999999999 8899999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          223 ACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .++..+|++++|+..|+++++++|.+
T Consensus       845 ~~~~~~g~~~~A~~~~~~a~~~~~~~  870 (899)
T TIGR02917       845 WLLVEKGEADRALPLLRKAVNIAPEA  870 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            99999999999999999999999974

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.10  E-value=1.3e-09  Score=99.38  Aligned_cols=107  Identities=12%  Similarity=0.000  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Q 025537          139 WTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL  218 (251)
Q Consensus       139 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  218 (251)
                      +.+++.....|+..|..+-+.|+.++|..+...|--++|+ +...|..++.-..++|.+.+|+-+|.+||..+|.+.+..
T Consensus       166 Ikqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~  244 (895)
T KOG2076|consen  166 IKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELI  244 (895)
T ss_pred             HHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHH
Confidence            3334444445555555555555555555555555555554 445555555555555555555555555555555555555


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          219 YLQAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       219 ~~~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      ++++..|.++|++..|+..|.+.++++|
T Consensus       245 ~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  245 YERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            5555555555555555555555555554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.10  E-value=1.4e-09  Score=94.60  Aligned_cols=104  Identities=17%  Similarity=0.062  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      .....+...|..+.+.|++++|+..|+++++.+|.....++..++.+|...|++++|+..+++++...|+...+ ..+|.
T Consensus       212 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~  290 (389)
T PRK11788        212 QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQ  290 (389)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHH
Confidence            34556777888888888888888888888888776235667778888888888888888888888888876544 77888


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          224 CLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ++...|++++|+..|+++++.+|++
T Consensus       291 ~~~~~g~~~~A~~~l~~~l~~~P~~  315 (389)
T PRK11788        291 LLEEQEGPEAAQALLREQLRRHPSL  315 (389)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCcCH
Confidence            8888888888888888888888865

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.10  E-value=4.7e-11  Score=102.78  Aligned_cols=74  Identities=30%  Similarity=0.578  Sum_probs=63.3

Q ss_pred             CEEEeecCCC-CCch----------hhhHHHHcCCcccccccccc-CCCCH-HHHHHHHHHHhcccCcCCCCCCCHHHHH
Q 025537            1 MLLDLLSGKH-IPPS----------HALDLIRSKNFLLLMDSALE-GHFSN-DEGTELVRLASRCLQSEARERPNAKSLV   67 (251)
Q Consensus         1 vlLEl~tgr~-~~~~----------~~~~~~~~~~~~~~~d~~l~-~~~~~-~~~~~~~~va~~C~~~~p~~RP~m~~v~   67 (251)
                      |||||+|||+ +|..          ++++.+..+.+.+++||+|. +.+.. +++.+++.+|++|++.+|..||+|.+|+
T Consensus       267 vllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv  346 (361)
T KOG1187|consen  267 VLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVV  346 (361)
T ss_pred             HHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHH
Confidence            5789999999 7743          25677788889999999997 66665 7899999999999999999999999999


Q ss_pred             HHHHhhh
Q 025537           68 ISLMSLQ   74 (251)
Q Consensus        68 ~~L~~~~   74 (251)
                      ++|..+.
T Consensus       347 ~~L~~~~  353 (361)
T KOG1187|consen  347 KELEGIL  353 (361)
T ss_pred             HHHHhhc
Confidence            9996554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.10  E-value=3.9e-09  Score=76.21  Aligned_cols=97  Identities=18%  Similarity=0.034  Sum_probs=87.0

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---ChHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD---WPTALYLQ  221 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~  221 (251)
                      ..+++.|..+-..|+.++|+.+|.++++.....  ...++.++|.++..+|++++|+..+++++.-.|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            456788999999999999999999999975431  3568999999999999999999999999999898   88889999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHh
Q 025537          222 AACLFSLGMENDARETLKDGTN  243 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~  243 (251)
                      +.+++.+|++++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999987764

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.09  E-value=1.9e-09  Score=98.46  Aligned_cols=128  Identities=16%  Similarity=0.107  Sum_probs=106.8

Q ss_pred             HHHHHHhcCCCCccchhhhhhhhhhHH--HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 025537          115 IHEILEGMGYKDDEGIANELSFQMWTS--QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYL  192 (251)
Q Consensus       115 ~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~  192 (251)
                      ++..+.-.+.+..+..+..+++.....  .....+-+++.+.++...|+|.+|+.+|..++...+..+..+|.++|.||+
T Consensus       381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~  460 (895)
T KOG2076|consen  381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM  460 (895)
T ss_pred             HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence            444444444444443333344433222  445688999999999999999999999999999998778899999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 025537          193 MNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGT  242 (251)
Q Consensus       193 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  242 (251)
                      .+|.+++|++.|.+++.+.|++.++...++.++.++|++++|.+.+....
T Consensus       461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999988766

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.08  E-value=4.8e-10  Score=73.91  Aligned_cols=62  Identities=31%  Similarity=0.376  Sum_probs=59.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          188 CLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       188 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ..+|+..++|++|+..+++++.++|+++.+|+.+|.++..+|+|.+|..+|+++++++|++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            56889999999999999999999999999999999999999999999999999999999753

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.08  E-value=8.9e-10  Score=94.92  Aligned_cols=87  Identities=11%  Similarity=0.090  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+..+|..++..|+|++|+..++++++++|. ++.+|+++|.+++.+|+|++|+..|+++++++|+++.++..+
T Consensus        32 ~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         32 DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            5566889999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCC
Q 025537          222 AACLFSLG  229 (251)
Q Consensus       222 g~~~~~~~  229 (251)
                      +.+...+.
T Consensus       111 ~~~~~kl~  118 (356)
T PLN03088        111 KECDEKIA  118 (356)
T ss_pred             HHHHHHHH
Confidence            99877663

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.04  E-value=4.3e-09  Score=79.09  Aligned_cols=97  Identities=16%  Similarity=0.122  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      ........|..++..|+|++|+..|++++...|+.  ...+..+++.+++..|+|++|+..++. +.-.+-.+.++..+|
T Consensus        47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~G  125 (145)
T PF09976_consen   47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLG  125 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHH
Confidence            35677889999999999999999999999987652  246788899999999999999999966 444555678889999


Q ss_pred             HHHHhCCCHHHHHHHHHHHH
Q 025537          223 ACLFSLGMENDARETLKDGT  242 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al  242 (251)
                      .+|...|++++|...|++||
T Consensus       126 di~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  126 DIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHhC
Confidence            99999999999999999985

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.03  E-value=6.1e-09  Score=84.96  Aligned_cols=103  Identities=11%  Similarity=0.046  Sum_probs=89.5

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV---YARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALY  219 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~  219 (251)
                      ++.++..|..++..|+|++|+..|++.+...|. .+.+   .+.+|.+|+++++|.+|+..+++.++..|++   +.++|
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            556788999999999999999999999999997 5544   4889999999999999999999999999987   57899


Q ss_pred             HHHHHHHhCCC------------------HHHHHHHHHHHHhhhhhcc
Q 025537          220 LQAACLFSLGM------------------ENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       220 ~~g~~~~~~~~------------------~~~A~~~~~~al~l~P~~~  249 (251)
                      .+|.++..++.                  ..+|+..|++.++..|+..
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~  158 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ  158 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence            99998766541                  3578899999999999753

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=2.7e-10  Score=96.00  Aligned_cols=97  Identities=26%  Similarity=0.378  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ..+.++..+.+|+.+++.++|..|+..|+.||+++|+ ++..|.||+.+++.+++|++|+.++++.++++|.+.+++.+.
T Consensus        45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~  123 (486)
T KOG0550|consen   45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLRE  123 (486)
T ss_pred             HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccch
Confidence            3456889999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHH
Q 025537          222 AACLFSLGMENDARETLK  239 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~  239 (251)
                      +.++..+++..+|...|+
T Consensus       124 ~~c~~a~~~~i~A~~~~~  141 (486)
T KOG0550|consen  124 GQCHLALSDLIEAEEKLK  141 (486)
T ss_pred             hhhhhhhHHHHHHHHHhh
Confidence            999999999999987665

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.02  E-value=1e-09  Score=94.62  Aligned_cols=71  Identities=17%  Similarity=0.133  Sum_probs=67.5

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH---HHHHHHHHHhCCCHHHHHHHHHHHHhh-hh
Q 025537          175 GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTA---LYLQAACLFSLGMENDARETLKDGTNL-EA  246 (251)
Q Consensus       175 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~g~~~~~~~~~~~A~~~~~~al~l-~P  246 (251)
                      .+|+ ++.+|+|+|.+|+.+|+|++|+..|++||+++|+++.+   ||++|.+|..+|++++|+.+|++|+++ +|
T Consensus        70 ~dP~-~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~  144 (453)
T PLN03098         70 ADVK-TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL  144 (453)
T ss_pred             CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch
Confidence            6888 99999999999999999999999999999999999965   999999999999999999999999998 44

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.97  E-value=1.5e-08  Score=81.98  Aligned_cols=103  Identities=17%  Similarity=0.126  Sum_probs=94.3

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYL  220 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  220 (251)
                      +..+++.+-.+++.|+|..|...|..-|+.-|+.  .+.+++-+|.+++.+|+|+.|...|..+++-.|++   |++++.
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            4458899999999999999999999999998852  46789999999999999999999999999998876   578999


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          221 QAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       221 ~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +|.+...+|+.++|...|+++++--|+.
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            9999999999999999999999999874

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.97  E-value=2.4e-09  Score=83.46  Aligned_cols=106  Identities=11%  Similarity=-0.035  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      +...|.-++++|..|-..|-+.-|...|++++.+.|+ .+.+|+.+|.-+..-|+|+.|.+.|+..+++||.+--++.++
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR  139 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  139 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence            3456888999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |.+++--|+|.-|..++.+--+-||++
T Consensus       140 gi~~YY~gR~~LAq~d~~~fYQ~D~~D  166 (297)
T COG4785         140 GIALYYGGRYKLAQDDLLAFYQDDPND  166 (297)
T ss_pred             ceeeeecCchHhhHHHHHHHHhcCCCC
Confidence            999999999999999999998888875

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.96  E-value=2.4e-09  Score=81.29  Aligned_cols=87  Identities=14%  Similarity=0.117  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC-
Q 025537          162 FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM----------PQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM-  230 (251)
Q Consensus       162 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~-  230 (251)
                      |+.|.+.++.....+|. ++..+.+.|.+++.+.+          +++|+.-+++||.++|+...+++.+|.+|..++. 
T Consensus         7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            68899999999999998 99999999998887633          4668888999999999999999999999988775 


Q ss_pred             ----------HHHHHHHHHHHHhhhhhcc
Q 025537          231 ----------ENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       231 ----------~~~A~~~~~~al~l~P~~~  249 (251)
                                |++|..+|++|..++|+++
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne  114 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNE  114 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence                      8999999999999999874

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.95  E-value=1.3e-08  Score=80.87  Aligned_cols=105  Identities=16%  Similarity=0.177  Sum_probs=86.9

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---HHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP---TALY  219 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~  219 (251)
                      .+..++..|..++..|+|.+|+..|++.+...|..  ...+.+.+|.++++.|+|..|+..+++.++..|+++   .++|
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            46788999999999999999999999999988751  457889999999999999999999999999999874   6899


Q ss_pred             HHHHHHHhCC-----------CHHHHHHHHHHHHhhhhhcc
Q 025537          220 LQAACLFSLG-----------MENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       220 ~~g~~~~~~~-----------~~~~A~~~~~~al~l~P~~~  249 (251)
                      .+|.+++.+.           ...+|+..|+..++..|+..
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~  124 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE  124 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence            9999976653           34689999999999999864

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.95  E-value=9.1e-09  Score=88.48  Aligned_cols=101  Identities=8%  Similarity=-0.149  Sum_probs=90.9

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh----HHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP----TALYL  220 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~  220 (251)
                      ....+...|..+...|++++|+..++++++++|+ +..++..+|.+++..|++++|+..+.+++...|..+    ..|+.
T Consensus       113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~  191 (355)
T cd05804         113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWH  191 (355)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHH
Confidence            3455667888999999999999999999999998 899999999999999999999999999999987543    35678


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          221 QAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       221 ~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      +|.++...|++++|+..|++++...|
T Consensus       192 la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         192 LALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            99999999999999999999987766

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.94  E-value=5.7e-09  Score=78.09  Aligned_cols=76  Identities=8%  Similarity=-0.051  Sum_probs=70.0

Q ss_pred             HccC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          173 IDGG-TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       173 l~~~-p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ...+ ++ .-+..+.+|.-++..|++++|...|+.+..++|.++..|+++|.++..+|+|.+|+..|.+|+.++|++-
T Consensus        27 ~~~~~~~-~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         27 LDDDVTQ-PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             HCCChHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            3455 55 6778888999999999999999999999999999999999999999999999999999999999999864

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.93  E-value=1.2e-08  Score=81.68  Aligned_cols=106  Identities=16%  Similarity=0.099  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .|.+... ......+...|+-+.+.....++....|. +..+..-.|...+..|+|.+|+..+.+|..++|+++++|..+
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l  140 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL  140 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence            4444555 67778888889999999999998888887 888888899999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |.+|.++|++++|...|.+++++.|++.
T Consensus       141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p  168 (257)
T COG5010         141 GAALDQLGRFDEARRAYRQALELAPNEP  168 (257)
T ss_pred             HHHHHHccChhHHHHHHHHHHHhccCCc
Confidence            9999999999999999999999999853

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.93  E-value=1.4e-09  Score=72.74  Aligned_cols=66  Identities=21%  Similarity=0.234  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----C---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537          180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVV----S---PDWPTALYLQAACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~---p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                      .+.+++++|.+|..+|+|++|+..|++|+.+    .   |.-..+++++|.++..+|++++|++.|++++++.
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            4567788888888888888888888888765    1   2235678888888888888888888888888764

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.93  E-value=1.2e-08  Score=87.94  Aligned_cols=101  Identities=21%  Similarity=0.191  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      .++-.+-..|..++..++.++|++.+.+++.++|+ .+.++.++|.++++.|++++|+...+..+.-+|+++..|..+|.
T Consensus       338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAq  416 (484)
T COG4783         338 DNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQ  416 (484)
T ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHH
Confidence            34445556667777777777777777777777776 66777777777777777777777777777777777777777777


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhh
Q 025537          224 CLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~  245 (251)
                      +|..+|+-.+|...+.+...+.
T Consensus       417 ay~~~g~~~~a~~A~AE~~~~~  438 (484)
T COG4783         417 AYAELGNRAEALLARAEGYALA  438 (484)
T ss_pred             HHHHhCchHHHHHHHHHHHHhC
Confidence            7777776666666666655544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.93  E-value=3.2e-09  Score=68.85  Aligned_cols=58  Identities=26%  Similarity=0.273  Sum_probs=54.6

Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          191 YLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       191 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ++..|+|++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            3578999999999999999999999999999999999999999999999999999985

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.91  E-value=2.1e-08  Score=86.48  Aligned_cols=106  Identities=14%  Similarity=0.101  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      ......+-.+..++..|++++|...++..+...|+ |+.++..++.+++..++.++|++.+++++.++|+.+..++.+|.
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            34556778888999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhhhccC
Q 025537          224 CLFSLGMENDARETLKDGTNLEAKKNK  250 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P~~~~  250 (251)
                      +|.+.|++.+|+..+...+.-+|++-+
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~  409 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPN  409 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCch
Confidence            999999999999999999999998754

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.90  E-value=4.5e-08  Score=84.14  Aligned_cols=66  Identities=14%  Similarity=-0.048  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      .++..+|.++..+|++++|+..++++++++|+++.++..+|.+++..|++++|+..+++++++.|.
T Consensus       115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            345567789999999999999999999999999999999999999999999999999999998874

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.89  E-value=1.6e-08  Score=95.25  Aligned_cols=96  Identities=14%  Similarity=0.020  Sum_probs=52.8

Q ss_pred             HHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC
Q 025537          151 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM  230 (251)
Q Consensus       151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~  230 (251)
                      .....+...|++++|+.++++++.-.|. ....+..+|.++..+|+|++|++.|+++++.+|+++.+++.++.++...++
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p~n~-~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q  151 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSSMNI-SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR  151 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence            4444444455555555555555522211 222222234466666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 025537          231 ENDARETLKDGTNLEAK  247 (251)
Q Consensus       231 ~~~A~~~~~~al~l~P~  247 (251)
                      +++|+..++++..++|+
T Consensus       152 ~~eAl~~l~~l~~~dp~  168 (822)
T PRK14574        152 GGVVLKQATELAERDPT  168 (822)
T ss_pred             HHHHHHHHHHhcccCcc
Confidence            66666666666666654

>PRK11906 transcriptional regulator; Provisional

Probab=98.87  E-value=2e-08  Score=86.86  Aligned_cols=89  Identities=18%  Similarity=0.117  Sum_probs=84.5

Q ss_pred             hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHH
Q 025537          159 AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETL  238 (251)
Q Consensus       159 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~  238 (251)
                      ..+-.+|.++-.+|++++|. ++.++..+|.++...++++.|+..|++|+.++|+++.+||..|.+....|+.++|.+++
T Consensus       317 ~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i  395 (458)
T PRK11906        317 ELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI  395 (458)
T ss_pred             hHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34567889999999999998 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhc
Q 025537          239 KDGTNLEAKK  248 (251)
Q Consensus       239 ~~al~l~P~~  248 (251)
                      ++|++++|..
T Consensus       396 ~~alrLsP~~  405 (458)
T PRK11906        396 DKSLQLEPRR  405 (458)
T ss_pred             HHHhccCchh
Confidence            9999999974

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.85  E-value=6.3e-09  Score=86.78  Aligned_cols=102  Identities=18%  Similarity=0.187  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .|.+.......+..+...|++++|...+....+..|. ++.++..+|.++..+|++++|+..++++++.+|+++..+..+
T Consensus       176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~-~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~  254 (280)
T PF13429_consen  176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD-DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAY  254 (280)
T ss_dssp             -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-HHHHHHHHHHHhcccccccccccccccccccccccccccccc
Confidence            5556777788899999999999988888888777777 888999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhh
Q 025537          222 AACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l  244 (251)
                      |.++...|++++|...++++++.
T Consensus       255 a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  255 ADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHT------------------
T ss_pred             ccccccccccccccccccccccc
Confidence            99999999999999999998764

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=6e-08  Score=82.15  Aligned_cols=99  Identities=12%  Similarity=0.019  Sum_probs=89.4

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  226 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  226 (251)
                      ..+.+.+..+.+.++|.+|+..-+++|+++|. |..+++.+|.+++.+|+|+.|+.+|++|++++|+|-.+...+..+..
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            36778999999999999999999999999998 99999999999999999999999999999999999999999988888


Q ss_pred             hCCCHHHH-HHHHHHHHhhhh
Q 025537          227 SLGMENDA-RETLKDGTNLEA  246 (251)
Q Consensus       227 ~~~~~~~A-~~~~~~al~l~P  246 (251)
                      ...++.+. .+.|...+..-+
T Consensus       337 k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            87777665 777777776544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.79  E-value=3.1e-08  Score=76.27  Aligned_cols=95  Identities=19%  Similarity=0.092  Sum_probs=80.3

Q ss_pred             hHHHhhcCHHHHHHHHHHHHccCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCC
Q 025537          154 DTAFRAKDFSTAIDCYTQFIDGGTM-VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLG  229 (251)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~  229 (251)
                      +-+|-.+.|..+...+...++..+. ....+|+++|.++..+|++++|+..|++|+.+.|+.   +.+|+++|.++..+|
T Consensus         7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g   86 (168)
T CHL00033          7 NDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG   86 (168)
T ss_pred             cccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence            3455567788888888776666553 136788999999999999999999999999997763   468999999999999


Q ss_pred             CHHHHHHHHHHHHhhhhhc
Q 025537          230 MENDARETLKDGTNLEAKK  248 (251)
Q Consensus       230 ~~~~A~~~~~~al~l~P~~  248 (251)
                      ++++|+..|+++++++|.+
T Consensus        87 ~~~eA~~~~~~Al~~~~~~  105 (168)
T CHL00033         87 EHTKALEYYFQALERNPFL  105 (168)
T ss_pred             CHHHHHHHHHHHHHhCcCc
Confidence            9999999999999998864

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.78  E-value=3.8e-08  Score=88.43  Aligned_cols=101  Identities=15%  Similarity=0.090  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      .+.+....|...+..++|.+|..+++.+++++|- ....|+++|.|.+++++++.|..+|.+++.++|++..+|.+++.+
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a  562 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA  562 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence            3445555666677789999999999999999997 899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhh
Q 025537          225 LFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      |..+++-.+|...+++|++.+-
T Consensus       563 yi~~~~k~ra~~~l~EAlKcn~  584 (777)
T KOG1128|consen  563 YIRLKKKKRAFRKLKEALKCNY  584 (777)
T ss_pred             HHHHhhhHHHHHHHHHHhhcCC
Confidence            9999999999999999999873

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.77  E-value=8.4e-08  Score=90.45  Aligned_cols=102  Identities=9%  Similarity=0.036  Sum_probs=89.7

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      ...+...|..+...|+|++|++.|+++++.+|+ ++.++..++.++...+++++|+..+++++..+|.+... ..++.++
T Consensus       102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~  179 (822)
T PRK14574        102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN  179 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence            445556688899999999999999999999999 89999999999999999999999999999999986554 5556666


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          226 FSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ..++++.+|+..|+++++++|++.
T Consensus       180 ~~~~~~~~AL~~~ekll~~~P~n~  203 (822)
T PRK14574        180 RATDRNYDALQASSEAVRLAPTSE  203 (822)
T ss_pred             HhcchHHHHHHHHHHHHHhCCCCH
Confidence            668888779999999999999875

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.76  E-value=2.5e-08  Score=66.49  Aligned_cols=68  Identities=13%  Similarity=0.015  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC---C-C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG---T-M--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS  211 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p-~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  211 (251)
                      ..+..+.+.|..++..|+|++|+.+|++++++.   + +  ..+.+++++|.++..+|++++|+..+++|+++.
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            457788999999999999999999999999661   1 1  136789999999999999999999999999863

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.75  E-value=1.4e-07  Score=84.92  Aligned_cols=105  Identities=12%  Similarity=0.033  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHhHHHhh--------cCHHHHHHHHHHHHcc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 025537          142 QMQETLNSKKHGDTAFRA--------KDFSTAIDCYTQFIDG--GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS  211 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~--~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  211 (251)
                      +|..+..+-.++..+...        .+...|.....+++.+  +|. .+.+|.-+|..+...|++++|...+++|+.++
T Consensus       372 dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~-~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~  450 (517)
T PRK10153        372 EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV-LPRIYEILAVQALVKGKTDEAYQAINKAIDLE  450 (517)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            444455555555544332        2345667777777664  666 78889999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          212 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       212 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      | +..+|+.+|.++...|++++|+..|++|++++|..
T Consensus       451 p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~  486 (517)
T PRK10153        451 M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE  486 (517)
T ss_pred             C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            9 57899999999999999999999999999999974

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.74  E-value=1.7e-07  Score=74.81  Aligned_cols=107  Identities=16%  Similarity=0.078  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      +|.+...++.+-.....+|+--+||+.....++..+. +.++|..++.+|+..|+|++|.-++++.+-+.|.++-.+-++
T Consensus       116 dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rl  194 (289)
T KOG3060|consen  116 DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRL  194 (289)
T ss_pred             CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            5666777888888888888888999999999999887 899999999999999999999999999999999999999999


Q ss_pred             HHHHHhCC---CHHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLG---MENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~---~~~~A~~~~~~al~l~P~~~  249 (251)
                      |.+++-+|   +++-|.++|.++++++|.+.
T Consensus       195 ae~~Yt~gg~eN~~~arkyy~~alkl~~~~~  225 (289)
T KOG3060|consen  195 AEVLYTQGGAENLELARKYYERALKLNPKNL  225 (289)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence            99988777   46779999999999999653

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.73  E-value=4.4e-08  Score=85.25  Aligned_cols=108  Identities=17%  Similarity=0.046  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCh
Q 025537          139 WTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN---DMPQEALGDAMQAQVVSPDWP  215 (251)
Q Consensus       139 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~  215 (251)
                      +.+-++.++.++..|+..|..+....|+..|.+++...|. ...+|.|++.++++.   |+--.|+.||..|++++|...
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~-~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~  445 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD-AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ  445 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc-hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH
Confidence            3445677999999999999999999999999999999998 999999999999984   577899999999999999999


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          216 TALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ++||+++.++..++++.+|+.+...+....|.
T Consensus       446 kah~~la~aL~el~r~~eal~~~~alq~~~Pt  477 (758)
T KOG1310|consen  446 KAHFRLARALNELTRYLEALSCHWALQMSFPT  477 (758)
T ss_pred             HHHHHHHHHHHHHhhHHHhhhhHHHHhhcCch
Confidence            99999999999999999999998887777773

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.72  E-value=2.5e-08  Score=85.46  Aligned_cols=103  Identities=17%  Similarity=0.121  Sum_probs=95.7

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      ++.++.++||..|..|++++|.+.|..|+.-+.. -..+++|.|..+-.+|+.++|+..|-+.-.+=-+++..++.++.+
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qiani  567 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI  567 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3567889999999999999999999999999866 789999999999999999999999999877777899999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |..+.+..+|+++|.++..+-|++
T Consensus       568 ye~led~aqaie~~~q~~slip~d  591 (840)
T KOG2003|consen  568 YELLEDPAQAIELLMQANSLIPND  591 (840)
T ss_pred             HHHhhCHHHHHHHHHHhcccCCCC
Confidence            999999999999999999998875

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.71  E-value=1.8e-07  Score=80.99  Aligned_cols=94  Identities=17%  Similarity=0.081  Sum_probs=86.1

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  226 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  226 (251)
                      +...-.+..++..++-.+|+..+.++|...|. ++.++..-+..++..++++.|+..+++|+.+.|+..+.|+.++.+|.
T Consensus       201 ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi  279 (395)
T PF09295_consen  201 EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYI  279 (395)
T ss_pred             cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            34445677788888999999999999999998 89999999999999999999999999999999999999999999999


Q ss_pred             hCCCHHHHHHHHHHH
Q 025537          227 SLGMENDARETLKDG  241 (251)
Q Consensus       227 ~~~~~~~A~~~~~~a  241 (251)
                      .+|+|++|+..+.-+
T Consensus       280 ~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  280 QLGDFENALLALNSC  294 (395)
T ss_pred             hcCCHHHHHHHHhcC
Confidence            999999999877644

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.71  E-value=9.6e-08  Score=84.90  Aligned_cols=104  Identities=13%  Similarity=0.039  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG--------GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV----  210 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----  210 (251)
                      |.........|..|+.+|+|++|+..+.+|++.        .|. -.....++|..|+.+++|.+|+..|++|+.+    
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~-va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLV-VASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            344556667999999999999999999999988        454 4566677999999999999999999999986    


Q ss_pred             ----CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          211 ----SPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       211 ----~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                          +|..+.++.++|.+|...|+|++|..++++|++|--+
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~  315 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK  315 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence                4556789999999999999999999999999988644

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.70  E-value=7.3e-08  Score=74.52  Aligned_cols=69  Identities=25%  Similarity=0.188  Sum_probs=64.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+.+++++|..+...|++++|+..|++++.+.|+.   ..+++.+|.++..+|++++|+..|+++++++|++
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            67789999999999999999999999999988764   4789999999999999999999999999999975

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.69  E-value=2.7e-07  Score=73.60  Aligned_cols=98  Identities=13%  Similarity=0.038  Sum_probs=57.2

Q ss_pred             HHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhC
Q 025537          149 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSL  228 (251)
Q Consensus       149 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~  228 (251)
                      .+..|..+-..|+|++|+++|+..++-||. +..+|-..-.+...+|+.-+||+....-++.-+++.++|..++.+|...
T Consensus        89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~  167 (289)
T KOG3060|consen   89 GKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE  167 (289)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence            344455555556666666666666666655 5555555555555555555666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHhhhhh
Q 025537          229 GMENDARETLKDGTNLEAK  247 (251)
Q Consensus       229 ~~~~~A~~~~~~al~l~P~  247 (251)
                      |+|+.|.-+|++++=+.|-
T Consensus       168 ~~f~kA~fClEE~ll~~P~  186 (289)
T KOG3060|consen  168 GDFEKAAFCLEELLLIQPF  186 (289)
T ss_pred             hHHHHHHHHHHHHHHcCCC
Confidence            6666666666666555554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.69  E-value=1e-07  Score=85.66  Aligned_cols=105  Identities=10%  Similarity=0.015  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ++-..+.|+..|..+.+.+++..|..+|..++.++|+ +.++|+|++.+|+++|+-.+|...+.+|++-+-++++.|-+.
T Consensus       515 nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENy  593 (777)
T KOG1128|consen  515 NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENY  593 (777)
T ss_pred             CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeech
Confidence            3445779999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      -.+....|++++|+..|.+.+.+.-+
T Consensus       594 mlvsvdvge~eda~~A~~rll~~~~~  619 (777)
T KOG1128|consen  594 MLVSVDVGEFEDAIKAYHRLLDLRKK  619 (777)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHhhhh
Confidence            99999999999999999998876543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.69  E-value=1.3e-07  Score=67.78  Aligned_cols=68  Identities=18%  Similarity=0.131  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       181 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +..++.+|..++..|++++|+..|.+++..+|++   +.+++.+|.++...|++++|+..|++++..+|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence            3578899999999999999999999999999987   6799999999999999999999999999999875

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.68  E-value=8.8e-08  Score=64.61  Aligned_cols=66  Identities=24%  Similarity=0.215  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          183 VYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       183 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +++++|.++...|++++|+..+.++++..|++..+++.+|.++...|++++|+..|++++++.|.+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            578899999999999999999999999999999999999999999999999999999999998875

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.65  E-value=8.3e-08  Score=88.62  Aligned_cols=108  Identities=9%  Similarity=0.033  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-hHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-PTAL  218 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~  218 (251)
                      +..++..+...++.+|-+|+|..+..++..++.....  .-+..|+++|.+|..+|+|++|..+|.++++.+|++ .-.+
T Consensus       266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~  345 (1018)
T KOG2002|consen  266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL  345 (1018)
T ss_pred             cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence            3445666777777777777777777777777755421  134457777777777777777777777777777776 6777


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          219 YLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       219 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +.+|+.|...|+++.|..+|+++++..|++.
T Consensus       346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~  376 (1018)
T KOG2002|consen  346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNY  376 (1018)
T ss_pred             cchhHHHHHhchHHHHHHHHHHHHHhCcchH
Confidence            7777777777777777777777777777754

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.65  E-value=1.3e-07  Score=78.07  Aligned_cols=106  Identities=12%  Similarity=-0.036  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG--TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY  219 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  219 (251)
                      .....+-+.+.|..++..++|+-++..|.+|+...  |+..+++|+|+|.+..-.|++.-|...|+-|+.-||++.+++.
T Consensus       354 G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealn  433 (478)
T KOG1129|consen  354 GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALN  433 (478)
T ss_pred             cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHH
Confidence            34556777788888888888888888888888753  4446778888888888888888888888888888888888888


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          220 LQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       220 ~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ++|..-...|+.++|...+..|-.+.|.
T Consensus       434 NLavL~~r~G~i~~Arsll~~A~s~~P~  461 (478)
T KOG1129|consen  434 NLAVLAARSGDILGARSLLNAAKSVMPD  461 (478)
T ss_pred             hHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence            8888888888888888888888888775

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=2e-07  Score=79.08  Aligned_cols=58  Identities=14%  Similarity=0.045  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEAL  201 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~  201 (251)
                      +...+.+..+|+.+...|+.++|+-.|..|+.+.|. ....|..+-.+|+..|++++|.
T Consensus       331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~  388 (564)
T KOG1174|consen  331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEAN  388 (564)
T ss_pred             cccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHH
Confidence            344567777777777777777777777777777776 6777777777777777766643

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.62  E-value=2.1e-06  Score=64.42  Aligned_cols=97  Identities=20%  Similarity=0.085  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PT  216 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~  216 (251)
                      ...+...+......+..+++..+...+++.++-.|+ .   ..+.+.+|.+++..|++++|+..+++++...|+.   +.
T Consensus         8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~   86 (145)
T PF09976_consen    8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL   86 (145)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence            345777788888888899999999999999999887 5   4677889999999999999999999999988765   56


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHH
Q 025537          217 ALYLQAACLFSLGMENDARETLKD  240 (251)
Q Consensus       217 ~~~~~g~~~~~~~~~~~A~~~~~~  240 (251)
                      +.+++|.++...|+|++|+..++.
T Consensus        87 a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   87 ARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHh
Confidence            899999999999999999999865

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.62  E-value=7.4e-08  Score=53.40  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=22.4

Q ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          215 PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3566777777777777777777777777777653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK11906 transcriptional regulator; Provisional

Probab=98.62  E-value=2.6e-07  Score=80.07  Aligned_cols=100  Identities=10%  Similarity=-0.022  Sum_probs=86.9

Q ss_pred             HHHHHHhHHHhhc---CHHHHHHHHHHHH---ccCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCC
Q 025537          148 NSKKHGDTAFRAK---DFSTAIDCYTQFI---DGGTMVSPTVYARRCLSYLMN---------DMPQEALGDAMQAQVVSP  212 (251)
Q Consensus       148 ~~~~~g~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p  212 (251)
                      .++.+|...+..+   ..+.|+.+|++|+   +++|. .+.+|..+|.|++..         ..-.+|++...+|++++|
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~  335 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT  335 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC
Confidence            4466676665444   3567899999999   99998 999999999999875         134678999999999999


Q ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          213 DWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       213 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .++.+++.+|.++...++++.|...|++|+.++||.
T Consensus       336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~  371 (458)
T PRK11906        336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI  371 (458)
T ss_pred             CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc
Confidence            999999999999999999999999999999999985

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.61  E-value=5.7e-07  Score=80.96  Aligned_cols=102  Identities=12%  Similarity=0.114  Sum_probs=85.8

Q ss_pred             HHHHHHHHHhHHHhhcC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhh--C
Q 025537          145 ETLNSKKHGDTAFRAKD---FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND--------MPQEALGDAMQAQVV--S  211 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~~--~  211 (251)
                      +|-.++.+|..++..++   +.+|+.+|++|++++|+ ++.+|..++.+|....        +...+.....+++.+  +
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~  416 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL  416 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence            46678888988876655   88999999999999999 9999999888886642        245666666776664  7


Q ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          212 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       212 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      |..+.+|.-+|..+...|++++|...|++|++++|+
T Consensus       417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps  452 (517)
T PRK10153        417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS  452 (517)
T ss_pred             cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence            888899999999999999999999999999999995

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.60  E-value=3.7e-07  Score=81.24  Aligned_cols=105  Identities=10%  Similarity=-0.008  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGT-------MVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS----  211 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----  211 (251)
                      +..+..+.+.|..|.+.|+|++|..++++|+++--       ..-+..+.+.+.++..++++++|+.++.+++++-    
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            45688999999999999999999999999997621       1145788999999999999999999999998862    


Q ss_pred             ----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          212 ----PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       212 ----p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                          |.-++.+.++|.+|+.+|+|++|.+.|++|+.+.-+
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~  399 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE  399 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence                234788999999999999999999999999987643

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.60  E-value=4.7e-07  Score=83.78  Aligned_cols=108  Identities=9%  Similarity=-0.011  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..++.++..|..+..+|+|++|..+|.+++..+|+...-.++.+|+.|+..|+++.|+-.|++.++..|++.+...-+
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL  382 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL  382 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            34557889999999999999999999999999999983366788999999999999999999999999999999999999


Q ss_pred             HHHHHhCC----CHHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLG----MENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~----~~~~A~~~~~~al~l~P~~~  249 (251)
                      |..|...+    ..+.|.....++++..|.+.
T Consensus       383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~  414 (1018)
T KOG2002|consen  383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS  414 (1018)
T ss_pred             HhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence            99999886    67899999999999988764

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.58  E-value=7.5e-08  Score=53.33  Aligned_cols=32  Identities=19%  Similarity=0.090  Sum_probs=24.6

Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHhCCCHHHHH
Q 025537          204 AMQAQVVSPDWPTALYLQAACLFSLGMENDAR  235 (251)
Q Consensus       204 ~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~  235 (251)
                      |++||+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            56777777777777777777777777777775

>TIGR00540 hemY_coli hemY protein

Probab=98.57  E-value=5.7e-07  Score=79.14  Aligned_cols=103  Identities=9%  Similarity=-0.055  Sum_probs=84.4

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh--HHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV--YARRCLSYLMNDMPQEALGDAMQAQVVSPDWP--TALYL  220 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~  220 (251)
                      +.......|..+...|++++|+..++++++..|+ +...  ..-+....+..++...++..++++++..|+++  ..+..
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd-~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s  340 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD-DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA  340 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-cccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence            5677888899999999999999999999999887 5532  12344445556788889999999999999999  88888


Q ss_pred             HHHHHHhCCCHHHHHHHHH--HHHhhhhhc
Q 025537          221 QAACLFSLGMENDARETLK--DGTNLEAKK  248 (251)
Q Consensus       221 ~g~~~~~~~~~~~A~~~~~--~al~l~P~~  248 (251)
                      +|.+++..|+|++|.++|+  .+++.+|+.
T Consensus       341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~  370 (409)
T TIGR00540       341 LGQLLMKHGEFIEAADAFKNVAACKEQLDA  370 (409)
T ss_pred             HHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence            9999999999999999999  577788865

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.56  E-value=7.1e-07  Score=83.97  Aligned_cols=102  Identities=12%  Similarity=-0.030  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH-------------------HHHHHHHHHHHhcCCHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP-------------------TVYARRCLSYLMNDMPQEALG  202 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-------------------~~~~~~a~~~~~~~~~~~A~~  202 (251)
                      .|.....++..|..+++.+++.+|...  .++...+. +.                   .+++.+|.||-++|++++|..
T Consensus        61 ~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~-~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~  137 (906)
T PRK14720         61 HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ-NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKG  137 (906)
T ss_pred             CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc-ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHH
Confidence            556677888888888888888888877  77777665 54                   788889999999999999999


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          203 DAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       203 ~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      .++++++++|+++.+..++|..|... ++++|+..+.+|++..=+
T Consensus       138 ~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~  181 (906)
T PRK14720        138 VWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK  181 (906)
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999 999999999999877544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.55  E-value=1e-06  Score=72.86  Aligned_cols=97  Identities=19%  Similarity=0.008  Sum_probs=92.4

Q ss_pred             HHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC
Q 025537          151 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM  230 (251)
Q Consensus       151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~  230 (251)
                      +.|..|++.|-+.+|...++.+++..|  .++.|..++.+|.+.+++..|+..+.+.++.-|-++..+...+.++..+++
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~  305 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ  305 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence            779999999999999999999999997  578888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhcc
Q 025537          231 ENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       231 ~~~A~~~~~~al~l~P~~~  249 (251)
                      +++|.+.|+.+++++|.|-
T Consensus       306 ~~~a~~lYk~vlk~~~~nv  324 (478)
T KOG1129|consen  306 QEDALQLYKLVLKLHPINV  324 (478)
T ss_pred             HHHHHHHHHHHHhcCCccc
Confidence            9999999999999999874

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.51  E-value=2.4e-07  Score=51.20  Aligned_cols=34  Identities=21%  Similarity=0.370  Sum_probs=23.2

Q ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          215 PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +++|+.+|.+++.+|+|++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3566777777777777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=1.3e-06  Score=71.69  Aligned_cols=89  Identities=16%  Similarity=0.135  Sum_probs=80.7

Q ss_pred             cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC---HHHHHH
Q 025537          160 KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM---ENDARE  236 (251)
Q Consensus       160 ~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~---~~~A~~  236 (251)
                      .+.+.-+.-.+.-+..+|+ +..-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|.+++....   ..+|..
T Consensus       136 ~~~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         136 QEMEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            3467777888889999998 999999999999999999999999999999999999999999999876654   578999


Q ss_pred             HHHHHHhhhhhcc
Q 025537          237 TLKDGTNLEAKKN  249 (251)
Q Consensus       237 ~~~~al~l~P~~~  249 (251)
                      .|++++++||.+.
T Consensus       215 ll~~al~~D~~~i  227 (287)
T COG4235         215 LLRQALALDPANI  227 (287)
T ss_pred             HHHHHHhcCCccH
Confidence            9999999999874

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.50  E-value=3.5e-07  Score=53.90  Aligned_cols=42  Identities=24%  Similarity=0.181  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      .+|..+|.+|..+|++++|+..|+++++.+|+++.+|+.+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            578889999999999999999999999999999999988875

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.50  E-value=1.9e-06  Score=71.13  Aligned_cols=100  Identities=13%  Similarity=0.063  Sum_probs=65.9

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV----SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      ++...-+.|-+.++|++||+.-++..++.+..    -+.+|+-+|..++.-.+++.|+..+.+|+..+|+++.+-..+|.
T Consensus       143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~  222 (389)
T COG2956         143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGR  222 (389)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhH
Confidence            44455566666666777777666666665541    24466666666666666777777777777777777777677777


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          224 CLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ++...|+|..|++.++.+++-||+
T Consensus       223 v~~~~g~y~~AV~~~e~v~eQn~~  246 (389)
T COG2956         223 VELAKGDYQKAVEALERVLEQNPE  246 (389)
T ss_pred             HHHhccchHHHHHHHHHHHHhChH
Confidence            777777777777777777766665

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.49  E-value=1.6e-06  Score=76.05  Aligned_cols=84  Identities=19%  Similarity=0.050  Sum_probs=55.5

Q ss_pred             cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Q 025537          160 KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK  239 (251)
Q Consensus       160 ~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~  239 (251)
                      +++++++...++.++..|+ ++..+..+|..++..|+|.+|.++|+++++..|++.. +..++.++..+|+.++|..+|+
T Consensus       308 ~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~  385 (398)
T PRK10747        308 NNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRR  385 (398)
T ss_pred             CChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence            5555555555555566665 6666667777777777777777777777777776543 4456777777777777777777


Q ss_pred             HHHhhh
Q 025537          240 DGTNLE  245 (251)
Q Consensus       240 ~al~l~  245 (251)
                      +++.+.
T Consensus       386 ~~l~~~  391 (398)
T PRK10747        386 DGLMLT  391 (398)
T ss_pred             HHHhhh
Confidence            776654

>TIGR00540 hemY_coli hemY protein

Probab=98.47  E-value=6.7e-06  Score=72.41  Aligned_cols=100  Identities=14%  Similarity=0.041  Sum_probs=86.5

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      ....+.-.|..+...|+++.|..+|.++.+..|+....+...++.+++..|+++.|+..+++.++..|+++.++..++.+
T Consensus       117 ~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~  196 (409)
T TIGR00540       117 PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEA  196 (409)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34567788888999999999999999999888872234666679999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhh
Q 025537          225 LFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l  244 (251)
                      +...|++++|...+.+.++.
T Consensus       197 ~~~~~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       197 YIRSGAWQALDDIIDNMAKA  216 (409)
T ss_pred             HHHHhhHHHHHHHHHHHHHc
Confidence            99999999999999988865

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.47  E-value=3.1e-07  Score=50.84  Aligned_cols=34  Identities=24%  Similarity=0.161  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537          181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW  214 (251)
Q Consensus       181 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  214 (251)
                      +.+|+++|.+|+.+|++++|+.+|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4578888888888888888888888888888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.47  E-value=2.2e-06  Score=70.77  Aligned_cols=102  Identities=12%  Similarity=0.081  Sum_probs=94.1

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-PTALYLQAA  223 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~  223 (251)
                      =|+.+-+.+..+....+++.|...+.+|++.+|+ +..+-..+|.+++..|+|+.|++.++.+++.||++ +...-.+..
T Consensus       179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~  257 (389)
T COG2956         179 IAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE  257 (389)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            3566778899999999999999999999999998 98999999999999999999999999999999998 677888899


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          224 CLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ||..+|+.++.+..+.++.+..++
T Consensus       258 ~Y~~lg~~~~~~~fL~~~~~~~~g  281 (389)
T COG2956         258 CYAQLGKPAEGLNFLRRAMETNTG  281 (389)
T ss_pred             HHHHhCCHHHHHHHHHHHHHccCC
Confidence            999999999999999999987765

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.46  E-value=1.7e-06  Score=77.33  Aligned_cols=104  Identities=15%  Similarity=0.025  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      +..-+.+...-...|...+|+.|..+|.+|....|  ...+|+.-+.....++..++|+..++.|++..|++++.|..+|
T Consensus       615 pnseeiwlaavKle~en~e~eraR~llakar~~sg--TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlG  692 (913)
T KOG0495|consen  615 PNSEEIWLAAVKLEFENDELERARDLLAKARSISG--TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLG  692 (913)
T ss_pred             CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC--cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHh
Confidence            33445666667777888899999999999988876  5788888888888999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          223 ACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +++..+++.+.|...|..+++..|+.
T Consensus       693 Qi~e~~~~ie~aR~aY~~G~k~cP~~  718 (913)
T KOG0495|consen  693 QIEEQMENIEMAREAYLQGTKKCPNS  718 (913)
T ss_pred             HHHHHHHHHHHHHHHHHhccccCCCC
Confidence            99999999999999999999999975

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.46  E-value=1.7e-06  Score=81.45  Aligned_cols=102  Identities=9%  Similarity=-0.110  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh--------
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP--------  215 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--------  215 (251)
                      .....+...+..+...+++++|+...+.+++..|+ ...+|+..|.++++.+++.+|...  .++.+-+.+.        
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~  105 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI  105 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence            34566677777888888888888888888888887 888888888888888877766555  5555555444        


Q ss_pred             -----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          216 -----------TALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       216 -----------~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                                 .+++.+|.||-.+|++++|...|+++|+++|+|
T Consensus       106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n  149 (906)
T PRK14720        106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN  149 (906)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc
Confidence                       888888888888888888888888888888876

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.45  E-value=4e-07  Score=61.61  Aligned_cols=61  Identities=13%  Similarity=0.107  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQA  207 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  207 (251)
                      +...+...|..+|+.|+|++|+..+++ ++.+|. +....+.+|.|++++|+|++|+..+++|
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            566788899999999999999999999 888887 7788888899999999999999999875

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1.1e-06  Score=77.16  Aligned_cols=106  Identities=9%  Similarity=-0.001  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .|..+..|+.-|.-|+--|++.+|..+|.+|..+||. .+.+|...|.+|.-.|+.++|+..|..|-++-|....-.+.+
T Consensus       308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYl  386 (611)
T KOG1173|consen  308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYL  386 (611)
T ss_pred             CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHH
Confidence            4566888999999999999999999999999999998 999999999999999999999999999999999888888888


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |.=|..+++++-|...|.+|+.+.|++
T Consensus       387 gmey~~t~n~kLAe~Ff~~A~ai~P~D  413 (611)
T KOG1173|consen  387 GMEYMRTNNLKLAEKFFKQALAIAPSD  413 (611)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCc
Confidence            999999999999999999999999975

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.44  E-value=1.7e-07  Score=51.89  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=31.4

Q ss_pred             HHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025537          168 CYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEAL  201 (251)
Q Consensus       168 ~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~  201 (251)
                      +|++||+++|+ ++.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence            48999999999 9999999999999999999986

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.44  E-value=3.8e-06  Score=73.66  Aligned_cols=99  Identities=15%  Similarity=0.068  Sum_probs=84.8

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT-VYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      ...+...+....+.|+++.|..+|.++.+.+|+ +.. .....+.++...|+++.|+..++++++.+|+++.++..++.+
T Consensus       118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~-~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~  196 (398)
T PRK10747        118 VVNYLLAAEAAQQRGDEARANQHLERAAELADN-DQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA  196 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            334555566669999999999999999999987 543 334558999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhh
Q 025537          225 LFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~  245 (251)
                      |...|++++|+..+.+..+..
T Consensus       197 ~~~~gdw~~a~~~l~~l~k~~  217 (398)
T PRK10747        197 YIRTGAWSSLLDILPSMAKAH  217 (398)
T ss_pred             HHHHHhHHHHHHHHHHHHHcC
Confidence            999999999998777776544

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.42  E-value=3.8e-06  Score=65.01  Aligned_cols=76  Identities=16%  Similarity=0.169  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYL  220 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  220 (251)
                      ..+..|.++|.++++.+.++.||..-++||++.|. +-.++..||.+|-++..|++|+++|++.++++|....+.-.
T Consensus       132 ~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~  207 (271)
T KOG4234|consen  132 ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREA  207 (271)
T ss_pred             HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence            45678889999999999999999999999999998 88899999999999999999999999999999998765433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1.9e-06  Score=73.32  Aligned_cols=105  Identities=11%  Similarity=0.016  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      ..+..++-.|..+|..++|+.|+.+-.++|+.+|. +..+|...|..+..+|+.++|+-.|+.|+.+.|..-..|-.+-.
T Consensus       298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~h  376 (564)
T KOG1174|consen  298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFH  376 (564)
T ss_pred             cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            34667788889999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          224 CLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +|...|.+.||...-..+++.-|++-
T Consensus       377 sYLA~~~~kEA~~~An~~~~~~~~sA  402 (564)
T KOG1174|consen  377 SYLAQKRFKEANALANWTIRLFQNSA  402 (564)
T ss_pred             HHHhhchHHHHHHHHHHHHHHhhcch
Confidence            99999999999999999998888764

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.41  E-value=1.3e-06  Score=77.74  Aligned_cols=106  Identities=12%  Similarity=-0.096  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .++..+.+-.+|..+...|+-++|..+...+++.|+. +..+|.-+|.++...++|++||..|..|+.++|+|-..|..+
T Consensus        37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl  115 (700)
T KOG1156|consen   37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL  115 (700)
T ss_pred             CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            5566788889999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +....++++|+.....-.+.+++.|..
T Consensus       116 slLQ~QmRd~~~~~~tr~~LLql~~~~  142 (700)
T KOG1156|consen  116 SLLQIQMRDYEGYLETRNQLLQLRPSQ  142 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence            999999999999999999999998875

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.37  E-value=1.5e-05  Score=64.19  Aligned_cols=104  Identities=16%  Similarity=0.135  Sum_probs=89.6

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---HHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP---TALYL  220 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~  220 (251)
                      +..++++|...++.|+|++|+..|+......|..  ...+...++.++++.++|+.|+..+++-+++.|+++   .++|.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            6789999999999999999999999999888751  356888899999999999999999999999999874   67888


Q ss_pred             HHHHHHhCC--------CHHHHHHHHHHHHhhhhhcc
Q 025537          221 QAACLFSLG--------MENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       221 ~g~~~~~~~--------~~~~A~~~~~~al~l~P~~~  249 (251)
                      +|.+++..=        ...+|...|+..+.--|+..
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence            899876543        24788999999999999853

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.37  E-value=1e-05  Score=62.01  Aligned_cols=102  Identities=14%  Similarity=0.082  Sum_probs=91.9

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--ChHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD--WPTALYLQ  221 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~  221 (251)
                      ..+.....|+.+...|+|.+|...|.+++.- ..+ ++..+..++.+.+.++++..|....++..+.+|.  .|+.+...
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~  166 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAH-DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF  166 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence            3567788999999999999999999999974 334 7888999999999999999999999999999996  48888999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      |.+|..+|.+.+|...|+.++...|.
T Consensus       167 aR~laa~g~~a~Aesafe~a~~~ypg  192 (251)
T COG4700         167 ARTLAAQGKYADAESAFEVAISYYPG  192 (251)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHhCCC
Confidence            99999999999999999999988775

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.32  E-value=2.3e-06  Score=76.37  Aligned_cols=103  Identities=16%  Similarity=0.079  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ++...--|--.|..+-..++|++||.+|+.|+..+|+ |..+|..++....++++|+.....-.+.+++.|.+-..|+..
T Consensus        71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~  149 (700)
T KOG1156|consen   71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGF  149 (700)
T ss_pred             CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHH
Confidence            3334446667888888999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhh
Q 025537          222 AACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                      +.+++.+|++..|....+...+..
T Consensus       150 Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  150 AVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999998877665543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.32  E-value=1.6e-06  Score=47.74  Aligned_cols=34  Identities=15%  Similarity=0.059  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537          181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW  214 (251)
Q Consensus       181 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  214 (251)
                      +.+|+.+|.+++.+|+|++|+..|++++.++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3567888888888888888888888888888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.32  E-value=4.8e-06  Score=69.61  Aligned_cols=106  Identities=13%  Similarity=0.068  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHhHHHhh-cCHHHHHHHHHHHHccCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----
Q 025537          144 QETLNSKKHGDTAFRA-KDFSTAIDCYTQFIDGGT-----MVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD----  213 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----  213 (251)
                      ..+..+.+.|..+... |++++|+.+|.+|+++-.     .....++.+.|.++..+|+|++|+..|+++....-+    
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~  191 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL  191 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence            3477888999999888 999999999999998722     112457888999999999999999999998875322    


Q ss_pred             --Ch-HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          214 --WP-TALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       214 --~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                        .+ ..++..+.|+...|++..|...|++....+|...
T Consensus       192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred             chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence              12 3567889999999999999999999999999754

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.31  E-value=5.3e-06  Score=68.37  Aligned_cols=69  Identities=14%  Similarity=0.084  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          181 PTVYARRCLSY-LMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       181 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ...++..|..+ +..|+|++|+..|++.++..|++   +.++|.+|.+|+..|+|++|+..|+++++..|++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~  214 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP  214 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence            46778888876 56799999999999999999998   58999999999999999999999999999999754

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.30  E-value=5.7e-06  Score=77.07  Aligned_cols=99  Identities=11%  Similarity=0.027  Sum_probs=89.5

Q ss_pred             HHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHh-
Q 025537          150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM-PQEALGDAMQAQVVSPDWPTALYLQAACLFS-  227 (251)
Q Consensus       150 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~-  227 (251)
                      ...+....+.++|++|++.-.++++.+|+ |..++..+|.++..+++ .++|-+.|..|.+++|++.-||-.+|..|.. 
T Consensus         6 LK~Ak~al~nk~YeealEqskkvLk~dpd-NYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~   84 (1238)
T KOG1127|consen    6 LKSAKDALRNKEYEEALEQSKKVLKEDPD-NYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERY   84 (1238)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhcCCC-cchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHcc
Confidence            44566678889999999999999999999 99999999999999998 9999999999999999999999999999887 


Q ss_pred             --CCCHHHHHHHHHHHHhhhhhcc
Q 025537          228 --LGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       228 --~~~~~~A~~~~~~al~l~P~~~  249 (251)
                        ...++++-..|.+++-+.|+.+
T Consensus        85 ~dIl~ld~~~~~yq~~~l~le~q~  108 (1238)
T KOG1127|consen   85 NDILDLDRAAKCYQRAVLILENQS  108 (1238)
T ss_pred             chhhhhhHhHHHHHHHHHhhhhhh
Confidence              4568999999999988887644

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.28  E-value=7e-05  Score=56.06  Aligned_cols=98  Identities=18%  Similarity=0.023  Sum_probs=76.7

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC---------------------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV---------------------SPTVYARRCLSYLMNDMPQEALGDAM  205 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------------~~~~~~~~a~~~~~~~~~~~A~~~~~  205 (251)
                      +.+...|......++.+.++..+.+++.+-...                     ...+...++..+...|++++|+..+.
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            344556777777889999999999999773210                     12355667788889999999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537          206 QAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       206 ~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l  244 (251)
                      +++.++|.+-.+|..+-.+|...|++.+|+..|+++.+.
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.27  E-value=2.4e-06  Score=79.47  Aligned_cols=96  Identities=14%  Similarity=0.049  Sum_probs=86.7

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  227 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  227 (251)
                      .+-.+|-.+...+++.+|+..|+.|++.+|. +..+|..+|.+|...|+|..|+..|.+|..++|.+.-+.|..+.....
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd  642 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD  642 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence            4556888999999999999999999999998 899999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 025537          228 LGMENDARETLKDGTNL  244 (251)
Q Consensus       228 ~~~~~~A~~~~~~al~l  244 (251)
                      +|+|.+|+..+...+.-
T Consensus       643 ~GkYkeald~l~~ii~~  659 (1238)
T KOG1127|consen  643 NGKYKEALDALGLIIYA  659 (1238)
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence            99999999988877654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.26  E-value=5.4e-06  Score=63.19  Aligned_cols=82  Identities=10%  Similarity=-0.057  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHhHHHhhc----------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC-----------HH
Q 025537          140 TSQMQETLNSKKHGDTAFRAK----------DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM-----------PQ  198 (251)
Q Consensus       140 ~~~~~~a~~~~~~g~~~~~~~----------~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~-----------~~  198 (251)
                      ..+|.+++.+.+-|.++....          -+++|+..|++||.++|+ ...+++++|.+|..++.           |+
T Consensus        19 ~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~   97 (186)
T PF06552_consen   19 AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFE   97 (186)
T ss_dssp             HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred             HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence            335666777777777775543          457899999999999998 99999999999998654           78


Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHH
Q 025537          199 EALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       199 ~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      +|..+|++|+..+|++.-....+.
T Consensus        98 kA~~~FqkAv~~~P~ne~Y~ksLe  121 (186)
T PF06552_consen   98 KATEYFQKAVDEDPNNELYRKSLE  121 (186)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHH
Confidence            899999999999999876544443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.25  E-value=7.7e-06  Score=59.09  Aligned_cols=67  Identities=16%  Similarity=0.007  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+++++|.++-.+|+.++|+..|++|+...++.   ..++..+|.++..+|++++|+..+++++.-.|+.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~   71 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD   71 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence            478899999999999999999999999975543   6799999999999999999999999999988873

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.24  E-value=1.7e-05  Score=58.52  Aligned_cols=74  Identities=15%  Similarity=0.022  Sum_probs=67.0

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhccC
Q 025537          177 TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK  250 (251)
Q Consensus       177 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  250 (251)
                      |+..+..+++.|...++.|+|.+|+..++....-.|..   ..+.+.+|.+|+..++|++|+..+++-++|+|++.+
T Consensus         6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen    6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            44467888999999999999999999999999887754   688999999999999999999999999999999764

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.23  E-value=1.1e-05  Score=65.89  Aligned_cols=71  Identities=10%  Similarity=-0.028  Sum_probs=65.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH---HHHHHHHHhCCCHHHHHHHHHHHHhhhhhccC
Q 025537          180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL---YLQAACLFSLGMENDARETLKDGTNLEAKKNK  250 (251)
Q Consensus       180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  250 (251)
                      .+..++..|..++..|+|++|+..|++++...|..+.+.   +.+|.+|+.+++|++|+..|++.++++|++.+
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~  104 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN  104 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence            677788899999999999999999999999999986655   99999999999999999999999999999764

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.21  E-value=7.4e-06  Score=68.45  Aligned_cols=100  Identities=16%  Similarity=0.133  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC-----CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCC--CC--
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG-----TMVSPTVYARRCLSYLMN-DMPQEALGDAMQAQVVSP--DW--  214 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p--~~--  214 (251)
                      .+...+..+...+++.++++|+.+|++|+++-     |..-+.++.++|.+|... |++++|+..|++|+.+..  +.  
T Consensus        73 ~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~  152 (282)
T PF14938_consen   73 EAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH  152 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh
Confidence            34444445555566679999999999999762     222357889999999998 999999999999999732  12  


Q ss_pred             --hHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537          215 --PTALYLQAACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       215 --~~~~~~~g~~~~~~~~~~~A~~~~~~al~l  244 (251)
                        ...+...|.++..+|+|++|+..|++....
T Consensus       153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence              466788999999999999999999998764

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.21  E-value=1.2e-05  Score=63.82  Aligned_cols=73  Identities=15%  Similarity=0.070  Sum_probs=60.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          177 TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       177 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |+..+..++..|..++..|+|.+|+..|++.+...|..   +.+.+.+|.+++..|+|++|+..|++.++..|++.
T Consensus         1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~   76 (203)
T PF13525_consen    1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP   76 (203)
T ss_dssp             ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence            33367889999999999999999999999999998875   68999999999999999999999999999999865

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.21  E-value=2.9e-06  Score=66.53  Aligned_cols=75  Identities=20%  Similarity=0.147  Sum_probs=69.3

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          175 GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       175 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +.|.+.+..++.||..|-.+|-+.-|..||.+++.+.|+-+..+..+|.-+...|+|+.|.+.|...+++||.++
T Consensus        59 l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          59 LTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             CChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence            344457788999999999999999999999999999999999999999999999999999999999999999864

>PRK15331 chaperone protein SicA; Provisional

Probab=98.20  E-value=9.8e-06  Score=61.14  Aligned_cols=70  Identities=10%  Similarity=-0.192  Sum_probs=65.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .-...+..|.-++..|++++|...|.-...++|.+++.|+.+|.++..+++|++|+..|..|..+++++-
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp  105 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY  105 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence            5567788899999999999999999999999999999999999999999999999999999999988764

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.19  E-value=3.8e-06  Score=46.28  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          216 TALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      .+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            56788888888888888888888888888884

...

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.19  E-value=1.5e-05  Score=66.70  Aligned_cols=87  Identities=17%  Similarity=0.158  Sum_probs=72.6

Q ss_pred             CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCH-HHHHHHHH
Q 025537          161 DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGME-NDARETLK  239 (251)
Q Consensus       161 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~-~~A~~~~~  239 (251)
                      ++.+|...|+..-+..+. ++..++.++.|++.+|+|++|...+.+|+..+|+++.++.+++.+...+|+. +.+...+.
T Consensus       182 ~~~~A~y~f~El~~~~~~-t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGS-TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             CCCHHHHHHHHHHCCS---SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            699999999997777666 8889999999999999999999999999999999999999999999999998 56667777


Q ss_pred             HHHhhhhhc
Q 025537          240 DGTNLEAKK  248 (251)
Q Consensus       240 ~al~l~P~~  248 (251)
                      +....+|++
T Consensus       261 qL~~~~p~h  269 (290)
T PF04733_consen  261 QLKQSNPNH  269 (290)
T ss_dssp             HCHHHTTTS
T ss_pred             HHHHhCCCC
Confidence            777778764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.18  E-value=3.3e-05  Score=69.51  Aligned_cols=96  Identities=14%  Similarity=-0.022  Sum_probs=75.8

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  226 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  226 (251)
                      ..++-.+..+-..|++++|+.+.++||+..|. ..++|+..|.++.+.|++.+|...++.|-.+|+.+--.-..-+..+.
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            35567777777788888888888888888887 88888888888888888888888888888888877777677777788


Q ss_pred             hCCCHHHHHHHHHHHHh
Q 025537          227 SLGMENDARETLKDGTN  243 (251)
Q Consensus       227 ~~~~~~~A~~~~~~al~  243 (251)
                      ..|++++|.+.+..-.+
T Consensus       274 Ra~~~e~A~~~~~~Ftr  290 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTR  290 (517)
T ss_pred             HCCCHHHHHHHHHhhcC
Confidence            88888888877665543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.12  E-value=8.8e-06  Score=58.77  Aligned_cols=63  Identities=19%  Similarity=0.191  Sum_probs=57.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          187 RCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       187 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      -|.+...-|+.+.|++.|.++|.+-|..+.+|.+++.++...|+.++|+.++.+++++.-..+
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t  111 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT  111 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc
Confidence            367777899999999999999999999999999999999999999999999999999865443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.12  E-value=2.3e-05  Score=67.67  Aligned_cols=104  Identities=14%  Similarity=0.076  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH----------------------------------HHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT----------------------------------VYARRCL  189 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~----------------------------------~~~~~a~  189 (251)
                      ..++.+.+.++.|-...+..+||++|.++..+-|. ++.                                  ..--+|.
T Consensus       556 nn~evl~qianiye~led~aqaie~~~q~~slip~-dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a  634 (840)
T KOG2003|consen  556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN-DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA  634 (840)
T ss_pred             hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC-CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence            34666666777776666777777777766666554 443                                  3334555


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          190 SYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       190 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .|+...-+++||.+|++|--+.|+..+.....+.|+...|+|..|...|+...+..|++
T Consensus       635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped  693 (840)
T KOG2003|consen  635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED  693 (840)
T ss_pred             HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence            66666777889999999999999999988899999999999999999999988888875

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=4.1e-05  Score=64.28  Aligned_cols=130  Identities=18%  Similarity=0.112  Sum_probs=90.8

Q ss_pred             ccccccccchHHHHHHHHhcCCCCccchhhhhhhhhhHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH
Q 025537          103 LGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT  182 (251)
Q Consensus       103 ~~~a~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~  182 (251)
                      ..+..++.|+|+.-..|+-....+   .+.+.+.+.|            .|-.+|..|+|++|+..|+.+...+.. ++.
T Consensus        29 Ledfls~rDytGAislLefk~~~~---~EEE~~~~lW------------ia~C~fhLgdY~~Al~~Y~~~~~~~~~-~~e   92 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLD---REEEDSLQLW------------IAHCYFHLGDYEEALNVYTFLMNKDDA-PAE   92 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccc---hhhhHHHHHH------------HHHHHHhhccHHHHHHHHHHHhccCCC-Ccc
Confidence            444556667777666665443211   2222233333            355689999999999999999987654 889


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh--------------hCC------------CChHHHHHHHHHHHhCCCHHHHHH
Q 025537          183 VYARRCLSYLMNDMPQEALGDAMQAQV--------------VSP------------DWPTALYLQAACLFSLGMENDARE  236 (251)
Q Consensus       183 ~~~~~a~~~~~~~~~~~A~~~~~~al~--------------~~p------------~~~~~~~~~g~~~~~~~~~~~A~~  236 (251)
                      ++.|+|.|++-+|.|.+|.....+|-+              ++.            +..+-...++.++++.-+|.+|+.
T Consensus        93 l~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAId  172 (557)
T KOG3785|consen   93 LGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAID  172 (557)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHH
Confidence            999999999999999999877666521              211            112234566777788888999999


Q ss_pred             HHHHHHhhhhhc
Q 025537          237 TLKDGTNLEAKK  248 (251)
Q Consensus       237 ~~~~al~l~P~~  248 (251)
                      .|++.|.-+|+.
T Consensus       173 vYkrvL~dn~ey  184 (557)
T KOG3785|consen  173 VYKRVLQDNPEY  184 (557)
T ss_pred             HHHHHHhcChhh
Confidence            999999888874

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.10  E-value=3e-05  Score=70.63  Aligned_cols=102  Identities=21%  Similarity=0.168  Sum_probs=93.6

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  226 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  226 (251)
                      ..+...|..+.+.++-++|..+..+|-..+|- .+..|+.+|.++...|++.+|.+.|.-|+.++|+++....-+|.++.
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            34556677777788888999999999999997 99999999999999999999999999999999999999999999999


Q ss_pred             hCCCHHHHHH--HHHHHHhhhhhcc
Q 025537          227 SLGMENDARE--TLKDGTNLEAKKN  249 (251)
Q Consensus       227 ~~~~~~~A~~--~~~~al~l~P~~~  249 (251)
                      ..|+..-|..  .+..++++||.+.
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~n~  754 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPLNH  754 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCCCH
Confidence            9999988888  9999999999864

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.07  E-value=1.7e-05  Score=71.30  Aligned_cols=66  Identities=17%  Similarity=0.073  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          183 VYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       183 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +++.+|+.|-.+|++++|+.++++||...|..++.|+.+|.+|-..|++++|..+++.|-++|+.+
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D  261 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD  261 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence            558899999999999999999999999999999999999999999999999999999999999875

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.07  E-value=8.1e-06  Score=47.96  Aligned_cols=42  Identities=7%  Similarity=-0.108  Sum_probs=38.5

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCL  189 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~  189 (251)
                      ..+...|..+...|++++|+..|+++++.+|+ ++.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhhh
Confidence            45678899999999999999999999999999 9999998875

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.06  E-value=4.9e-05  Score=68.36  Aligned_cols=102  Identities=12%  Similarity=-0.075  Sum_probs=80.9

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      ...+...++...-.++.++|+.+++++|+..|+ ...+|..+|+++-++++.+.|...|...++.-|+.+..|..++..-
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle  729 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE  729 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence            335556666666677888888888888888887 8888888888888888888888888888888888888888888888


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhc
Q 025537          226 FSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ...|+.-.|...++++.--||++
T Consensus       730 Ek~~~~~rAR~ildrarlkNPk~  752 (913)
T KOG0495|consen  730 EKDGQLVRARSILDRARLKNPKN  752 (913)
T ss_pred             HHhcchhhHHHHHHHHHhcCCCc
Confidence            88888888888888888777765

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.06  E-value=4.6e-06  Score=69.54  Aligned_cols=63  Identities=19%  Similarity=0.126  Sum_probs=59.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          185 ARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       185 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      -.+|.-|+++|.|++||.+|.+++..+|.++-.|.+++.+|+.+..|..|..+...|+.||-.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~  163 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL  163 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence            357899999999999999999999999999999999999999999999999999999998854

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.00  E-value=0.0005  Score=48.82  Aligned_cols=97  Identities=15%  Similarity=0.162  Sum_probs=75.0

Q ss_pred             HHHhHHHhhcCHHHHHHHHHHHHccC---CCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CC
Q 025537          151 KHGDTAFRAKDFSTAIDCYTQFIDGG---TMV--------SPTVYARRCLSYLMNDMPQEALGDAMQAQVV-------SP  212 (251)
Q Consensus       151 ~~g~~~~~~~~~~~A~~~~~~al~~~---p~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~p  212 (251)
                      ..|...+..|-|++|...+.+|++..   |.+        ++.++-.++.++..+|+|++++....+||..       +.
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q   93 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ   93 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence            45666778899999999999999763   211        2456777899999999999999988888874       44


Q ss_pred             C----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          213 D----WPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       213 ~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      +    |..+-|.+|.++..+|+.++|+..|+.+-++-.+
T Consensus        94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE  132 (144)
T PF12968_consen   94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE  132 (144)
T ss_dssp             THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            4    4666789999999999999999999999876543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.00  E-value=7.9e-05  Score=62.43  Aligned_cols=101  Identities=13%  Similarity=0.034  Sum_probs=78.6

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSY--LMND--MPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~--~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+...-....+++.++++.|...+...-+.+.+   ....+++.++  +..|  .+.+|.-.|+......|..+..+..+
T Consensus       131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD---~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~  207 (290)
T PF04733_consen  131 LELLALAVQILLKMNRPDLAEKELKNMQQIDED---SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGL  207 (290)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC---HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHH
T ss_pred             ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            344455677889999999999999999888854   3344455444  3445  69999999999888878899999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +.++..+|+|++|...+.++++.+|++.
T Consensus       208 A~~~l~~~~~~eAe~~L~~al~~~~~~~  235 (290)
T PF04733_consen  208 AVCHLQLGHYEEAEELLEEALEKDPNDP  235 (290)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence            9999999999999999999999999763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=6.7e-05  Score=66.59  Aligned_cols=99  Identities=10%  Similarity=-0.001  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      +.+...++.+--.+.+.++|++|+....+-.... . +...++..++|++++++.++|+..++   ..++....+...+|
T Consensus        43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~-~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~A  117 (652)
T KOG2376|consen   43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-V-INSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRA  117 (652)
T ss_pred             CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-h-cchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHH
Confidence            4567788888889999999999995544433322 1 34455889999999999999999999   67888888999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          223 ACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      .+++.+|+|++|...|+..++-+-
T Consensus       118 QvlYrl~~ydealdiY~~L~kn~~  141 (652)
T KOG2376|consen  118 QVLYRLERYDEALDIYQHLAKNNS  141 (652)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCC
Confidence            999999999999999999876543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.93  E-value=1.9e-05  Score=43.43  Aligned_cols=33  Identities=24%  Similarity=0.087  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537          182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW  214 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  214 (251)
                      .+|+.+|.+|..+|++++|+..++++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            567888888888888888888888888888854

...

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=7.8e-06  Score=68.30  Aligned_cols=105  Identities=14%  Similarity=0.083  Sum_probs=91.5

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc-C--CC---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-G--TM---------------VSPTVYARRCLSYLMNDMPQEALGDAMQ  206 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~--p~---------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~  206 (251)
                      .++..++.|+..|++++|+.|...|.++++. +  |.               .-...+.|.+.+-++++.+..|+..+..
T Consensus       221 ~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~  300 (372)
T KOG0546|consen  221 REEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNE  300 (372)
T ss_pred             hhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccc
Confidence            3667788999999999999999999998753 1  10               0123567889999999999999999999


Q ss_pred             HHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          207 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       207 al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +++.++...++||+++.++..+.++++|+++++.+....|++.
T Consensus       301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~  343 (372)
T KOG0546|consen  301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK  343 (372)
T ss_pred             ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence            9999999999999999999999999999999999999999753

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.92  E-value=6.5e-06  Score=70.20  Aligned_cols=98  Identities=10%  Similarity=-0.033  Sum_probs=58.6

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC--ChH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV----SPD--WPT  216 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~--~~~  216 (251)
                      .+-+.||.|+-.|+|++||.+-..-+++...     ..-.++.|+|.||..+|+|+.|++.|++++.+    ...  .+.
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            5556667777777777777666555544211     01246667777777777777777777664332    222  234


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537          217 ALYLQAACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       217 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                      .-|.+|..|..+.+|+.|+.++.+-|.+.
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777777777776666655554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=0.00032  Score=57.70  Aligned_cols=103  Identities=16%  Similarity=0.043  Sum_probs=86.5

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHH---------------------
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDA---------------------  204 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~---------------------  204 (251)
                      .+.....+......|++.+|...|..++..+|. +..+...++.||...|+++.|...+                     
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l  212 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL  212 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            445567788889999999999999999999998 8999999999999999997653332                     


Q ss_pred             -------------HHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          205 -------------MQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       205 -------------~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                                   .+.+..+|+++.+-+.+|..|...|++++|.+.+-..++.|-..+
T Consensus       213 l~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~  270 (304)
T COG3118         213 LEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE  270 (304)
T ss_pred             HHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence                         223446899999999999999999999999999988887765443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.91  E-value=0.0002  Score=62.28  Aligned_cols=88  Identities=22%  Similarity=0.152  Sum_probs=80.0

Q ss_pred             hhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHH
Q 025537          158 RAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARET  237 (251)
Q Consensus       158 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~  237 (251)
                      ..++++.|+..+++..+.+|.    +..-++.+++..++..+|+...++++..+|.+...+...+..+...++++.|+..
T Consensus       181 ~t~~~~~ai~lle~L~~~~pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i  256 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPE----VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI  256 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCc----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            357899999999999988875    3445789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcc
Q 025537          238 LKDGTNLEAKKN  249 (251)
Q Consensus       238 ~~~al~l~P~~~  249 (251)
                      .+++.++.|++-
T Consensus       257 Ak~av~lsP~~f  268 (395)
T PF09295_consen  257 AKKAVELSPSEF  268 (395)
T ss_pred             HHHHHHhCchhH
Confidence            999999999853

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=4.8e-05  Score=63.90  Aligned_cols=86  Identities=15%  Similarity=0.053  Sum_probs=73.9

Q ss_pred             HHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHH
Q 025537          156 AFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDAR  235 (251)
Q Consensus       156 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~  235 (251)
                      +..+++|..|+.+++-.+..+..+....-.-+|.|++.+|+|++|+..|..+...+.-..+.+.+++-+++.+|.|.+|.
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~  111 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK  111 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence            45678999999999999887754344555557999999999999999999999988788999999999999999999999


Q ss_pred             HHHHHH
Q 025537          236 ETLKDG  241 (251)
Q Consensus       236 ~~~~~a  241 (251)
                      ..-.+|
T Consensus       112 ~~~~ka  117 (557)
T KOG3785|consen  112 SIAEKA  117 (557)
T ss_pred             HHHhhC
Confidence            876655

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.85  E-value=0.00042  Score=53.79  Aligned_cols=93  Identities=17%  Similarity=0.138  Sum_probs=66.6

Q ss_pred             HHHhhcCHHHHHHHHHHHHccCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHhCCCH
Q 025537          155 TAFRAKDFSTAIDCYTQFIDGGT--MVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD-WPTALYLQAACLFSLGME  231 (251)
Q Consensus       155 ~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~  231 (251)
                      .++..|++++|+..|.+++..+|  ......+..++..+...+++..|+..+.+++...+. ....+..++..+...+.+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            56777777777777777777665  124555666666666777777777777777777777 577777777777777777


Q ss_pred             HHHHHHHHHHHhhhhh
Q 025537          232 NDARETLKDGTNLEAK  247 (251)
Q Consensus       232 ~~A~~~~~~al~l~P~  247 (251)
                      ++|...+..++...|.
T Consensus       219 ~~a~~~~~~~~~~~~~  234 (291)
T COG0457         219 EEALEYYEKALELDPD  234 (291)
T ss_pred             HHHHHHHHHHHhhCcc
Confidence            7777777777777664

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.82  E-value=0.00034  Score=54.33  Aligned_cols=102  Identities=22%  Similarity=0.169  Sum_probs=68.6

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      ...+...+..+...+++++|+..+.+++...+......+.+++.++...+++..|+..+..++...|.....++.++..+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  246 (291)
T COG0457         167 AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLL  246 (291)
T ss_pred             HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHH
Confidence            34444555555666677777777777777765412566677777777777777777777777777777666666666666


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhh
Q 025537          226 FSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ...+.+++|...+.++++.+|.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         247 LELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHcCCHHHHHHHHHHHHHhCcc
Confidence            6666677777777777766663

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.81  E-value=0.00012  Score=62.77  Aligned_cols=102  Identities=15%  Similarity=0.083  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------C
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG----GT-MVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP------D  213 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~  213 (251)
                      .-.++-+.||.+.-.|+|+.|+++|.+++.+    .. ...+..-+.+|.+|.-+++|++||.+..+-+.+..      .
T Consensus       234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG  313 (639)
T KOG1130|consen  234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG  313 (639)
T ss_pred             HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4457889999999999999999999886644    32 12345567899999999999999999998776532      3


Q ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          214 WPTALYLQAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       214 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      ...+++.+|.+|..+|..+.|+...++.+++.-
T Consensus       314 e~RacwSLgna~~alg~h~kAl~fae~hl~~s~  346 (639)
T KOG1130|consen  314 ELRACWSLGNAFNALGEHRKALYFAELHLRSSL  346 (639)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            568899999999999999999999998887643

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.80  E-value=2.5e-05  Score=69.30  Aligned_cols=99  Identities=13%  Similarity=0.099  Sum_probs=89.4

Q ss_pred             HHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC
Q 025537          151 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM  230 (251)
Q Consensus       151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~  230 (251)
                      ..|.-+-..|+...|+.++..|+-..|.+...-..++|.+.++-|....|-....+++.+....|-.+|.+|.++..+.+
T Consensus       612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~  691 (886)
T KOG4507|consen  612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN  691 (886)
T ss_pred             cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence            34444456899999999999999999975667788999999999999999999999999998899999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhcc
Q 025537          231 ENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       231 ~~~A~~~~~~al~l~P~~~  249 (251)
                      .+.|+++|++|+.++|++-
T Consensus       692 i~~a~~~~~~a~~~~~~~~  710 (886)
T KOG4507|consen  692 ISGALEAFRQALKLTTKCP  710 (886)
T ss_pred             hHHHHHHHHHHHhcCCCCh
Confidence            9999999999999999863

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.73  E-value=0.00017  Score=58.60  Aligned_cols=66  Identities=18%  Similarity=0.084  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          184 YARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       184 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .++-|.-+++.|+|..|...|..-++..|+.   +.++|.+|.+++.+|+|++|...|..+.+-.|++.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~  212 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP  212 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence            7888999999999999999999999999986   78999999999999999999999999999888754

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.70  E-value=0.00054  Score=61.06  Aligned_cols=102  Identities=13%  Similarity=0.083  Sum_probs=82.3

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccC------------------------------CCCCHHHHHHHHHHHHhcCCH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGG------------------------------TMVSPTVYARRCLSYLMNDMP  197 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~------------------------------p~~~~~~~~~~a~~~~~~~~~  197 (251)
                      .+--+|..+++.|+|++|+..|+..++-+                              |..+.+.++|.|.++...|+|
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            44567889999999999999998875332                              112456789999999999999


Q ss_pred             HHHHHHHHHHHhh--------CCC-------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          198 QEALGDAMQAQVV--------SPD-------WPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       198 ~~A~~~~~~al~~--------~p~-------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .+|++..++|+++        +-+       -......++.++..+|+.++|...|...|+.+|-++
T Consensus       192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence            9999999999543        111       134567889999999999999999999999998654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.69  E-value=6.1e-05  Score=59.58  Aligned_cols=59  Identities=14%  Similarity=0.164  Sum_probs=45.3

Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          191 YLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       191 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ..+.++.+.|.+.|.+|+.+-|.|...|+++|....+.|+++.|.+.|++.++++|.+.
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            34566777777788888888888888888888877888888888888888888887754

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.69  E-value=9.8e-05  Score=41.24  Aligned_cols=31  Identities=19%  Similarity=0.040  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          217 ALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       217 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      +|.++|.+|..+|+|++|+.+|+++|.+..+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4566777777777777777777775554443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.67  E-value=0.00012  Score=67.18  Aligned_cols=106  Identities=18%  Similarity=0.169  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC---CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCCChHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV---SPTVYARRCLSYLMN--DMPQEALGDAMQAQVVSPDWPTA  217 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~  217 (251)
                      ...+..++..|+.+|++++|..|.-.|..++.+-|..   .+..+.+.+.||+++  |+|..++.+|.-|+...|...++
T Consensus        50 l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~  129 (748)
T KOG4151|consen   50 LSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKA  129 (748)
T ss_pred             HHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHH
Confidence            3447788999999999999999999999999998842   456788888888875  68999999999999999999999


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          218 LYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       218 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ++.++.+|..++.++-|.++..-....+|++
T Consensus       130 Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~  160 (748)
T KOG4151|consen  130 LLKRARKYEALNKLDLAVRDLRIVEKMDPSN  160 (748)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            9999999999999999999988888888876

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.0003  Score=58.00  Aligned_cols=85  Identities=15%  Similarity=0.017  Sum_probs=78.2

Q ss_pred             HHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHH
Q 025537          156 AFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDAR  235 (251)
Q Consensus       156 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~  235 (251)
                      +.+..+|..||++.+--.+..|. +-..+..+|.||+...+|..|...|++.-.+-|...+..+.-+..+++.+.|.+|+
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            46678999999999999999998 88899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 025537          236 ETLKDG  241 (251)
Q Consensus       236 ~~~~~a  241 (251)
                      ......
T Consensus        99 rV~~~~  104 (459)
T KOG4340|consen   99 RVAFLL  104 (459)
T ss_pred             HHHHHh
Confidence            876544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.0001  Score=60.69  Aligned_cols=95  Identities=17%  Similarity=0.169  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC------
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV----SPD------  213 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~------  213 (251)
                      .+|....+.|...|+.|+|++|+..|+.|++..-. ++-+-+|.+.|+++.|++..|+...+..++.    .|.      
T Consensus       142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy-qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~  220 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY-QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMT  220 (459)
T ss_pred             CccchhccchheeeccccHHHHHHHHHHHHhhcCC-CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccce
Confidence            35778889999999999999999999999999866 8888889999999999999999999887762    221      


Q ss_pred             ----------C---------hHHHHHHHHHHHhCCCHHHHHHHHH
Q 025537          214 ----------W---------PTALYLQAACLFSLGMENDARETLK  239 (251)
Q Consensus       214 ----------~---------~~~~~~~g~~~~~~~~~~~A~~~~~  239 (251)
                                +         .+++...+.++++.|+++.|.+.+.
T Consensus       221 tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  221 TEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             eccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                      1         3567778889999999999987654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.65  E-value=0.00053  Score=58.33  Aligned_cols=77  Identities=17%  Similarity=0.124  Sum_probs=62.0

Q ss_pred             HHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537          166 IDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       166 ~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l  244 (251)
                      +...++.+...|+ ++.++..+|..+++.+.|.+|-.+++.|++..| ....|..+|.++.++|+..+|.+.+++++.+
T Consensus       314 ~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         314 IKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            3344444455565 778889999999999999999999999999887 4556788899999999999999999998844

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.64  E-value=3.1e-05  Score=75.46  Aligned_cols=76  Identities=24%  Similarity=0.421  Sum_probs=55.1

Q ss_pred             CEEEeecCCC-CCchh---------hhHHHHcCCccccccccccCC--CCHHHHHHHHHHHhcccCcCCCCCCCHHHHHH
Q 025537            1 MLLDLLSGKH-IPPSH---------ALDLIRSKNFLLLMDSALEGH--FSNDEGTELVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus         1 vlLEl~tgr~-~~~~~---------~~~~~~~~~~~~~~d~~l~~~--~~~~~~~~~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      ||+||+||+. .+...         ++..........++|+.+...  .+.+++..+.+++.+|++.+|..||+|.+|++
T Consensus       867 vl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~  946 (968)
T PLN00113        867 ILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLK  946 (968)
T ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHhhCcCCchhCcCHHHHHH
Confidence            4679999998 65322         112222233556788887543  34567788899999999999999999999999


Q ss_pred             HHHhhhhh
Q 025537           69 SLMSLQKE   76 (251)
Q Consensus        69 ~L~~~~~~   76 (251)
                      .|+.+.+.
T Consensus       947 ~L~~~~~~  954 (968)
T PLN00113        947 TLESASRS  954 (968)
T ss_pred             HHHHhhcc
Confidence            99877544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.63  E-value=0.00045  Score=65.05  Aligned_cols=94  Identities=9%  Similarity=-0.079  Sum_probs=80.3

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  227 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  227 (251)
                      .|.-....+.+.|++++|.+.+++. ...|  +...|..+..++...|+++.|...+++.+++.|++...|..++.+|..
T Consensus       464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p--~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~  540 (697)
T PLN03081        464 HYACMIELLGREGLLDEAYAMIRRA-PFKP--TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS  540 (697)
T ss_pred             chHhHHHHHHhcCCHHHHHHHHHHC-CCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Confidence            4555677888899999999988763 3444  567799999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 025537          228 LGMENDARETLKDGTNL  244 (251)
Q Consensus       228 ~~~~~~A~~~~~~al~l  244 (251)
                      .|++++|.+.++...+.
T Consensus       541 ~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        541 SGRQAEAAKVVETLKRK  557 (697)
T ss_pred             CCCHHHHHHHHHHHHHc
Confidence            99999999999876654

>PLN03077 Protein ECB2; Provisional

Probab=97.62  E-value=0.0009  Score=64.54  Aligned_cols=96  Identities=11%  Similarity=-0.017  Sum_probs=82.0

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      ...|.-....+.+.|++++|.+.+++ +...|  +...|..+-.++...|+.+.+...++++++++|+++..|..++.+|
T Consensus       625 ~~~y~~lv~~l~r~G~~~eA~~~~~~-m~~~p--d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y  701 (857)
T PLN03077        625 LKHYACVVDLLGRAGKLTEAYNFINK-MPITP--DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY  701 (857)
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHH-CCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence            34667778888999999999999987 45666  5778888877888889999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhh
Q 025537          226 FSLGMENDARETLKDGTNL  244 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l  244 (251)
                      ...|++++|.+..+...+.
T Consensus       702 a~~g~~~~a~~vr~~M~~~  720 (857)
T PLN03077        702 ADAGKWDEVARVRKTMREN  720 (857)
T ss_pred             HHCCChHHHHHHHHHHHHc
Confidence            9999999999988766543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.62  E-value=4.6e-05  Score=66.22  Aligned_cols=85  Identities=15%  Similarity=0.119  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ++..|..+-+++.++++.++|..|+....+||+++|. ...+|..+|.+.+.++++.+|+.++++...+.|+.+++.-..
T Consensus        34 dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~  112 (476)
T KOG0376|consen   34 DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKI  112 (476)
T ss_pred             CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence            4455777778899999999999999999999999998 999999999999999999999999999999999999987776


Q ss_pred             HHHHHh
Q 025537          222 AACLFS  227 (251)
Q Consensus       222 g~~~~~  227 (251)
                      -.|-..
T Consensus       113 ~Ec~~~  118 (476)
T KOG0376|consen  113 DECNKI  118 (476)
T ss_pred             HHHHHH
Confidence            666433

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=6.4e-05  Score=59.80  Aligned_cols=62  Identities=13%  Similarity=0.140  Sum_probs=58.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          187 RCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       187 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      -|..++.-++|..|+..|.+||.++|..+..|-+++.+|+++.+++.+..+.+++++++||.
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~   77 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL   77 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH
Confidence            36677778899999999999999999999999999999999999999999999999999985

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.00041  Score=56.20  Aligned_cols=105  Identities=19%  Similarity=0.106  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHH----HccCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQF----IDGGT-MVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTA  217 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a----l~~~p-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  217 (251)
                      +++..-....|...++.||.+.|-.+|+..    =.++. ..+-.+..|.+.+|.-.++|..|...+.+++..||.++.+
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a  288 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA  288 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence            345666778899999999999999998843    22331 1145677888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          218 LYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       218 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      -.+.|.|+..+|+..+|++..+.+++..|.
T Consensus       289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  289 NNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            999999999999999999999999999996

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.58  E-value=9.5e-05  Score=40.08  Aligned_cols=31  Identities=29%  Similarity=0.381  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          217 ALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       217 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ++|++|.++..+|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5666777777777777777777777766665

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.55  E-value=0.00066  Score=60.78  Aligned_cols=104  Identities=22%  Similarity=0.281  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH--H
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM---VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT--A  217 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--~  217 (251)
                      |+.+-.+...|..+..+|+.++|++.|++++.....   .....++.++-+++.+.+|++|..++.+.++.+. |.+  .
T Consensus       264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y  342 (468)
T PF10300_consen  264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFY  342 (468)
T ss_pred             CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHH
Confidence            455778889999999999999999999999964422   2346788999999999999999999999998664 444  3


Q ss_pred             HHHHHHHHHhCCCH-------HHHHHHHHHHHhhhhh
Q 025537          218 LYLQAACLFSLGME-------NDARETLKDGTNLEAK  247 (251)
Q Consensus       218 ~~~~g~~~~~~~~~-------~~A~~~~~~al~l~P~  247 (251)
                      +|..|.|+..+|+.       ++|...|.++-.+-.+
T Consensus       343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k  379 (468)
T PF10300_consen  343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK  379 (468)
T ss_pred             HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence            45669999999999       8888888887766543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.55  E-value=0.00049  Score=41.93  Aligned_cols=43  Identities=12%  Similarity=-0.067  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      +.++.+|.+++++|+|.+|..+++.+++++|+|..+.-....+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            3567788889999999999999999999999988876554443

>PRK10941 hypothetical protein; Provisional

Probab=97.53  E-value=0.00067  Score=56.05  Aligned_cols=78  Identities=17%  Similarity=0.107  Sum_probs=60.4

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      ..+.+.-..+.+.++|+.|+.+.+..+.++|+ ++.-+--||.+|.++|.+..|+.|++.-++..|+.+.+-.-+..+.
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            35556666777888888888888888888887 7777777888888888888888888888888888887766555443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.51  E-value=0.0019  Score=50.03  Aligned_cols=100  Identities=15%  Similarity=0.161  Sum_probs=80.0

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH-HHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS--PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT-ALYLQA  222 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~g  222 (251)
                      .......+..++..+++++|+..+++++....+++  +.+-.++|.+.+++|.+++|+.......  ++.|.. ..-.+|
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrG  166 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRG  166 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhh
Confidence            45667888899999999999999999997654433  3455778999999999999999777632  333433 345679


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          223 ACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      .++...|+-++|...|+++++.+++
T Consensus       167 Dill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         167 DILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             hHHHHcCchHHHHHHHHHHHHccCC
Confidence            9999999999999999999998653

>smart00028 TPR Tetratricopeptide repeats

Probab=97.51  E-value=0.00014  Score=38.44  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          216 TALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      .+|+.+|.++..+|++++|..+|+++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            34556666666666666666666666666554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.49  E-value=0.0017  Score=54.24  Aligned_cols=97  Identities=16%  Similarity=0.066  Sum_probs=73.2

Q ss_pred             HHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhC
Q 025537          150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM-NDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSL  228 (251)
Q Consensus       150 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~  228 (251)
                      ....+...+.+..+.|...|.+|++..+. ...+|...|...+. .++.+.|...|+.+++..|.++..|......+..+
T Consensus         5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    5 IQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            34445555566688888999999865544 67888888888666 45666699999999999999999998888888999


Q ss_pred             CCHHHHHHHHHHHHhhhhh
Q 025537          229 GMENDARETLKDGTNLEAK  247 (251)
Q Consensus       229 ~~~~~A~~~~~~al~l~P~  247 (251)
                      |+.+.|...|++++..-|.
T Consensus        84 ~d~~~aR~lfer~i~~l~~  102 (280)
T PF05843_consen   84 NDINNARALFERAISSLPK  102 (280)
T ss_dssp             T-HHHHHHHHHHHCCTSSC
T ss_pred             CcHHHHHHHHHHHHHhcCc
Confidence            9999999999998876554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK10941 hypothetical protein; Provisional

Probab=97.45  E-value=0.0021  Score=53.14  Aligned_cols=67  Identities=12%  Similarity=0.001  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ....|+=.+|++.++++.|+.+.+..+.+.|+++.-+--+|.+|.++|.+..|..+++..++..|+.
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d  248 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED  248 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence            4567888899999999999999999999999999999999999999999999999999999999975

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.45  E-value=0.00082  Score=57.75  Aligned_cols=95  Identities=16%  Similarity=0.189  Sum_probs=71.4

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccC--------CCC----C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGG--------TMV----S-----PTVYARRCLSYLMNDMPQEALGDAMQAQVV  210 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~----~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  210 (251)
                      .....|...|++++|..|+--|.-|+++.        |..    +     ..+--.+..||+++++.+-|+....+.|.+
T Consensus       178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l  257 (569)
T PF15015_consen  178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL  257 (569)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence            33444555555566666655555555542        210    0     123356899999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 025537          211 SPDWPTALYLQAACLFSLGMENDARETLKDGT  242 (251)
Q Consensus       211 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  242 (251)
                      +|.++--|.+.|.++..+.+|-+|...+.-+.
T Consensus       258 nP~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  258 NPSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988776654

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.44  E-value=0.00077  Score=47.40  Aligned_cols=93  Identities=15%  Similarity=0.067  Sum_probs=74.8

Q ss_pred             HHhHHHhhcCHHHHHHHHHHHHccCCCCC--HHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhCCCChHHH
Q 025537          152 HGDTAFRAKDFSTAIDCYTQFIDGGTMVS--PTVYARRCLSYLMNDM-----------PQEALGDAMQAQVVSPDWPTAL  218 (251)
Q Consensus       152 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~  218 (251)
                      ++..+|.+|++-+|++..+..+...+...  ..++.--|.+++++..           .-.+++.|.++..+.|+.+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            46678999999999999999998876522  1445555777765432           3458999999999999999999


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537          219 YLQAACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       219 ~~~g~~~~~~~~~~~A~~~~~~al~l  244 (251)
                      |.+|.-+-....|+++..-.+++|.+
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            99999877788899999888888865

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.40  E-value=0.00081  Score=55.68  Aligned_cols=82  Identities=16%  Similarity=0.133  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ...+|....+.+....+.|+.++|..+|..|+.++|+ ++.++...|...-..++.-+|-.+|-+|+.++|.+.+++.++
T Consensus       112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR  190 (472)
T KOG3824|consen  112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR  190 (472)
T ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence            4456666677777888999999999999999999999 999999999988888889999999999999999999999887


Q ss_pred             HHH
Q 025537          222 AAC  224 (251)
Q Consensus       222 g~~  224 (251)
                      +..
T Consensus       191 ~RT  193 (472)
T KOG3824|consen  191 ART  193 (472)
T ss_pred             hcc
Confidence            654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.37  E-value=0.0004  Score=42.32  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          216 TALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +.+|.+|.+++.+|+|++|..+.+.+|+++|+|.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~   35 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR   35 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence            4689999999999999999999999999999975

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.37  E-value=0.004  Score=60.98  Aligned_cols=88  Identities=18%  Similarity=0.062  Sum_probs=37.1

Q ss_pred             HhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHhCCC
Q 025537          153 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV--SPDWPTALYLQAACLFSLGM  230 (251)
Q Consensus       153 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~  230 (251)
                      ...+.+.|++++|...|.+..+.+...+...|+.+..+|.+.|++++|+..|.+..+.  .|+ ...|..+..+|...|+
T Consensus       586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~  664 (1060)
T PLN03218        586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGD  664 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCC
Confidence            3344444455555554444444432223344444444444444444444444443332  232 2233333444444444


Q ss_pred             HHHHHHHHHHH
Q 025537          231 ENDARETLKDG  241 (251)
Q Consensus       231 ~~~A~~~~~~a  241 (251)
                      +++|.+.|.+.
T Consensus       665 ~eeA~~l~~eM  675 (1060)
T PLN03218        665 LDKAFEILQDA  675 (1060)
T ss_pred             HHHHHHHHHHH
Confidence            44444444433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.33  E-value=0.0019  Score=48.26  Aligned_cols=63  Identities=11%  Similarity=0.049  Sum_probs=54.6

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV  209 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  209 (251)
                      ...+...+..+...|++++|+..+.+++..+|. +-.+|..+-.+|..+|+..+|+..|.+...
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            456677888899999999999999999999998 999999999999999999999999998743

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.31  E-value=0.00081  Score=56.85  Aligned_cols=99  Identities=18%  Similarity=0.151  Sum_probs=81.8

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--------
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW--------  214 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--------  214 (251)
                      .+.-.|+++...+.|+++++.|++|++....     ..-.++..+|..|-+++++++|+-+..+|.++-...        
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k  203 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK  203 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence            3445788899999999999999999987432     123578899999999999999999999998875432        


Q ss_pred             --hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          215 --PTALYLQAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       215 --~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                        ..++|+++.++..+|+.-+|.++.+++.++.-
T Consensus       204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal  237 (518)
T KOG1941|consen  204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL  237 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence              35679999999999999999999999987753

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.30  E-value=0.0022  Score=60.43  Aligned_cols=93  Identities=12%  Similarity=-0.031  Sum_probs=45.0

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS-PDWPTALYLQAACL  225 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~  225 (251)
                      ..|......+.+.|++++|+..|.+..+..-..+...|..+..++.++|++++|...+...++.. +.+...+..+...|
T Consensus       291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y  370 (697)
T PLN03081        291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY  370 (697)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence            34555666666666666666666665443211134445555555555555555555544444432 22233333334444


Q ss_pred             HhCCCHHHHHHHHH
Q 025537          226 FSLGMENDARETLK  239 (251)
Q Consensus       226 ~~~~~~~~A~~~~~  239 (251)
                      .+.|++++|...|+
T Consensus       371 ~k~G~~~~A~~vf~  384 (697)
T PLN03081        371 SKWGRMEDARNVFD  384 (697)
T ss_pred             HHCCCHHHHHHHHH
Confidence            44444444444443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.29  E-value=0.0045  Score=59.97  Aligned_cols=99  Identities=15%  Similarity=-0.000  Sum_probs=80.5

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS----PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW------PTA  217 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~  217 (251)
                      .....|..++..|++++|...+.++++..|..+    ..++..+|.++...|++++|...+.+++......      ..+
T Consensus       454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~  533 (903)
T PRK04841        454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS  533 (903)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence            334567788899999999999999998655322    2456788999999999999999999998764321      356


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          218 LYLQAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       218 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      +..+|.+++..|++++|...+++++.+..
T Consensus       534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~  562 (903)
T PRK04841        534 LLQQSEILFAQGFLQAAYETQEKAFQLIE  562 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            67889999999999999999999998744

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.29  E-value=0.0024  Score=51.67  Aligned_cols=71  Identities=14%  Similarity=-0.033  Sum_probs=65.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhccC
Q 025537          180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK  250 (251)
Q Consensus       180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  250 (251)
                      .+..|++-|...++-|+|.+|+..|+......|..   .++...++.++++.++|++|+..+++-+++.|++.+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n  106 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN  106 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence            56788899999999999999999999999987765   688999999999999999999999999999998764

>smart00028 TPR Tetratricopeptide repeats

Probab=97.29  E-value=0.00045  Score=36.30  Aligned_cols=32  Identities=22%  Similarity=0.096  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 025537          182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPD  213 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  213 (251)
                      .+|+++|.+++.+++++.|+..+.++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35667777777777777777777777777664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.27  E-value=0.0061  Score=59.78  Aligned_cols=97  Identities=12%  Similarity=0.056  Sum_probs=54.1

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCChHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV----VSPDWPTALYLQA  222 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~g  222 (251)
                      ..|......|.+.|++++|+..|.+..+..-..+...|+.+..+|.+.|++++|...+.+...    +.|+ ...|..+-
T Consensus       508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI  586 (1060)
T PLN03218        508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALM  586 (1060)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHH
Confidence            344455556666666666666666654433222455566666666666666666666665543    2343 34455555


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhh
Q 025537          223 ACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l  244 (251)
                      .+|.+.|++++|.+.|++..+.
T Consensus       587 ~ay~k~G~ldeA~elf~~M~e~  608 (1060)
T PLN03218        587 KACANAGQVDRAKEVYQMIHEY  608 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHc
Confidence            5566666666666666555544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.26  E-value=0.0006  Score=38.00  Aligned_cols=27  Identities=15%  Similarity=-0.058  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025537          183 VYARRCLSYLMNDMPQEALGDAMQAQV  209 (251)
Q Consensus       183 ~~~~~a~~~~~~~~~~~A~~~~~~al~  209 (251)
                      +|.++|.+|.++|+|++|++.|++++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            355666666666666666666666443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.25  E-value=0.0019  Score=60.13  Aligned_cols=101  Identities=11%  Similarity=-0.076  Sum_probs=73.8

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      .-+.--+|-.+++.|++++|..+++..-...++ +...+.-+-.||..++++++|...|++++..+|+ -+..+.+-.+|
T Consensus        43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmay  120 (932)
T KOG2053|consen   43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAY  120 (932)
T ss_pred             HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHH
Confidence            334456677788888888888666654444554 6677777888888888888888888888888888 77788888888


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhc
Q 025537          226 FSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ...+.|.+-.+.--+.-+.-|++
T Consensus       121 vR~~~yk~qQkaa~~LyK~~pk~  143 (932)
T KOG2053|consen  121 VREKSYKKQQKAALQLYKNFPKR  143 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcc
Confidence            88888876655555555555553

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.25  E-value=0.00058  Score=36.85  Aligned_cols=32  Identities=19%  Similarity=0.011  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537          183 VYARRCLSYLMNDMPQEALGDAMQAQVVSPDW  214 (251)
Q Consensus       183 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  214 (251)
                      +++++|.++.++|++++|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            56677777777777777777777777777763

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.0092  Score=48.56  Aligned_cols=97  Identities=12%  Similarity=0.076  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhHHHh----hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 025537          145 ETLNSKKHGDTAFR----AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYL  220 (251)
Q Consensus       145 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  220 (251)
                      +-..+.+.++.+.+    .+++.+|.-.|+..-+.-|. ++...+..+.|++.+|+|++|....+.|+..++++++++.+
T Consensus       168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N  246 (299)
T KOG3081|consen  168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN  246 (299)
T ss_pred             hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence            34455566666543    45688999999997774444 78899999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHH
Q 025537          221 QAACLFSLGMENDARETLKDGT  242 (251)
Q Consensus       221 ~g~~~~~~~~~~~A~~~~~~al  242 (251)
                      +-.+-..+|.-.++..-+-.-+
T Consensus       247 liv~a~~~Gkd~~~~~r~l~QL  268 (299)
T KOG3081|consen  247 LIVLALHLGKDAEVTERNLSQL  268 (299)
T ss_pred             HHHHHHHhCCChHHHHHHHHHH
Confidence            9999999999877766554433

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.0036  Score=56.57  Aligned_cols=97  Identities=12%  Similarity=0.089  Sum_probs=85.1

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-----SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      .+.+.+...|+.++|..+++.|...+..-|..     .+...-+++.||+.+.+.+.|++++..|-+.+|.++-..+...
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            56789999999999999999999998775531     3556778999999999999999999999999999999888888


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhh
Q 025537          223 ACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l  244 (251)
                      .+...-|.-++|+.+..+....
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHhh
Confidence            9999999999999988776543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.20  E-value=0.0019  Score=44.14  Aligned_cols=77  Identities=12%  Similarity=-0.002  Sum_probs=56.8

Q ss_pred             HHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 025537          165 AIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW--PTALYLQAACLFSLGMENDARETLKDGT  242 (251)
Q Consensus       165 A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~~~~~~~~~~A~~~~~~al  242 (251)
                      .+..+.++++.+|+ +..+.+.+|..++..|++++|++.+-.+++.+|++  ..+.-.+-.++..+|.-+.-...|++-|
T Consensus         7 ~~~al~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL   85 (90)
T PF14561_consen    7 DIAALEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL   85 (90)
T ss_dssp             HHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            46678888888988 88888999999999999999999999999988877  6666666777777777666666666543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.18  E-value=0.0039  Score=60.40  Aligned_cols=98  Identities=11%  Similarity=0.084  Sum_probs=59.8

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--------C
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD--------W  214 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~  214 (251)
                      .+...|..+...|++++|...+.+++.....     ....++.++|.+++..|++++|...+.+++.+...        .
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  572 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH  572 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence            3455666666777777777777777654221     01234556677777777777777777776664211        1


Q ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537          215 PTALYLQAACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                      ...+..+|.+++..|++++|...+.+++.+.
T Consensus       573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence            2234456666777777777777777766653

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.16  E-value=0.0011  Score=58.04  Aligned_cols=101  Identities=10%  Similarity=-0.050  Sum_probs=80.3

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHH-HccCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQF-IDGGTM-------VSPTVYARRCLSYLMNDMPQEALGDAMQAQV-------  209 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-------  209 (251)
                      .+..+.-+.+.++..|+|.+|...+... |...|.       ..-.+|+|+|.+++++|.|.-++-+|.+|++       
T Consensus       239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~  318 (696)
T KOG2471|consen  239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR  318 (696)
T ss_pred             CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence            4667888899999999999999887653 333332       0234679999999999999999999999996       


Q ss_pred             --hCC---------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537          210 --VSP---------DWPTALYLQAACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       210 --~~p---------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                        +.|         ......|+.|..|...|+.-.|.++|.++....
T Consensus       319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf  365 (696)
T KOG2471|consen  319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF  365 (696)
T ss_pred             ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence              122         346788999999999999999999999987643

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.15  E-value=0.0063  Score=41.59  Aligned_cols=51  Identities=20%  Similarity=0.180  Sum_probs=35.4

Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhccC
Q 025537          200 ALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK  250 (251)
Q Consensus       200 A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  250 (251)
                      .+..+++++..+|++..+.|.+|..+...|++++|++.+-..++.+|++.+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~   57 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED   57 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc
Confidence            355667777777777777777777777777777777777777777776643

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.0039  Score=50.15  Aligned_cols=70  Identities=10%  Similarity=0.106  Sum_probs=64.4

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL  218 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  218 (251)
                      -+.+-...++..|+|-++++.-+..+...|. |..+|+.||.++...-+.++|..|+.++++++|.-..+-
T Consensus       232 LllNy~QC~L~~~e~yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            5667788889999999999999999999999 999999999999999999999999999999999765543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.06  E-value=0.008  Score=52.71  Aligned_cols=102  Identities=15%  Similarity=0.022  Sum_probs=93.1

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      ...+..-|.--..++++..|...|.+||..+-. +.++|..-+.+-++.+....|...+.+|+.+-|.-.+.||..-..-
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE  151 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME  151 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            344555566677788999999999999999976 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhc
Q 025537          226 FSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      -.+|+...|.+.|++=++..|+.
T Consensus       152 E~LgNi~gaRqiferW~~w~P~e  174 (677)
T KOG1915|consen  152 EMLGNIAGARQIFERWMEWEPDE  174 (677)
T ss_pred             HHhcccHHHHHHHHHHHcCCCcH
Confidence            99999999999999999999864

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.0017  Score=54.27  Aligned_cols=75  Identities=13%  Similarity=0.047  Sum_probs=64.7

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhccC
Q 025537          176 GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD----WPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK  250 (251)
Q Consensus       176 ~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  250 (251)
                      .|++.+.-|-.-|+-|++-++|..|+..|.++|+.+-.    ++-.|.++|.|.+.+|+|..|+.+..+|+.++|.+.+
T Consensus        76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K  154 (390)
T KOG0551|consen   76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK  154 (390)
T ss_pred             ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence            44445666667799999999999999999999997543    4678999999999999999999999999999998653

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.99  E-value=0.0021  Score=53.36  Aligned_cols=62  Identities=10%  Similarity=-0.024  Sum_probs=57.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          188 CLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       188 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |.-..+.|+.++|...|..|+.++|++++++...|.....-++.-+|-++|-+||.++|.++
T Consensus       123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns  184 (472)
T KOG3824|consen  123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS  184 (472)
T ss_pred             HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence            33445789999999999999999999999999999999999999999999999999999876

>PLN03077 Protein ECB2; Provisional

Probab=96.97  E-value=0.0074  Score=58.29  Aligned_cols=95  Identities=9%  Similarity=0.008  Sum_probs=69.3

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCChHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV---SPDWPTALYLQA  222 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~g  222 (251)
                      ...|......+.+.|+.++|+..|++.++.....+...|..+-.++.+.|.+++|...|+...+.   .| +...|..+.
T Consensus       554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv  632 (857)
T PLN03077        554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVV  632 (857)
T ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHH
Confidence            44566777778888888888888888776432224566666777788888888888888887643   34 346777788


Q ss_pred             HHHHhCCCHHHHHHHHHHH
Q 025537          223 ACLFSLGMENDARETLKDG  241 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~a  241 (251)
                      .++...|++++|.+.+++.
T Consensus       633 ~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        633 DLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHHhCCCHHHHHHHHHHC
Confidence            8888888888888877763

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.96  E-value=0.022  Score=44.18  Aligned_cols=96  Identities=15%  Similarity=0.064  Sum_probs=80.0

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      ++..+.-+++..|..+++..|...++...+.+|. -.+......|.++..+|.+..|...|+.++...|+ +.+-.+.+.
T Consensus       123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e  201 (251)
T COG4700         123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAE  201 (251)
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHH
Confidence            4677888899999999999999999999999884 14455556688888999999999999999999985 555667788


Q ss_pred             HHHhCCCHHHHHHHHHHH
Q 025537          224 CLFSLGMENDARETLKDG  241 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~a  241 (251)
                      .+..+|+.++|..-|...
T Consensus       202 ~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         202 MLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHhcchhHHHHHHHHH
Confidence            899999998887766543

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.95  E-value=0.00019  Score=59.98  Aligned_cols=58  Identities=14%  Similarity=0.067  Sum_probs=54.6

Q ss_pred             hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhccC
Q 025537          193 MNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK  250 (251)
Q Consensus       193 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  250 (251)
                      ..|.++.||+.|..||.++|.....|-.++.++..+++...|+.++..+++++|+...
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~  183 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK  183 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc
Confidence            3677999999999999999999999999999999999999999999999999998653

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.94  E-value=0.019  Score=44.55  Aligned_cols=97  Identities=10%  Similarity=-0.043  Sum_probs=77.7

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--Ch----HH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD--WP----TA  217 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~----~~  217 (251)
                      ...+.++|..+.+.|+++.|++.|.++.+....  .-...+++...+.+..++|..+.....+|-.+-..  +.    +.
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            567889999999999999999999999887643  12457788888999999999999999998665322  22    33


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHH
Q 025537          218 LYLQAACLFSLGMENDARETLKDGT  242 (251)
Q Consensus       218 ~~~~g~~~~~~~~~~~A~~~~~~al  242 (251)
                      ....|..+...++|.+|...|-.++
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccC
Confidence            4556888899999999999887664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.89  E-value=0.048  Score=46.74  Aligned_cols=95  Identities=17%  Similarity=0.044  Sum_probs=68.2

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      ...+.--+...-+.|+++.|-.+..++-+..++.+-..+..++......|++..|..-..++++..|.++...--.-.+|
T Consensus       118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y  197 (400)
T COG3071         118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAY  197 (400)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence            34555555666677777777777777777744435666777777777778888888888888888888888777777788


Q ss_pred             HhCCCHHHHHHHHHH
Q 025537          226 FSLGMENDARETLKD  240 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~  240 (251)
                      ...|++.+......+
T Consensus       198 ~~~g~~~~ll~~l~~  212 (400)
T COG3071         198 IRLGAWQALLAILPK  212 (400)
T ss_pred             HHhccHHHHHHHHHH
Confidence            888877776655443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.89  E-value=0.0071  Score=50.87  Aligned_cols=97  Identities=14%  Similarity=0.008  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-GTMVS--PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY  219 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  219 (251)
                      |.+....+-.-.++|..|+...-...+.+.|-. +|+.-  .-+....+.++...|-|.+|.+..++|++++|.+.++..
T Consensus       134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~H  213 (491)
T KOG2610|consen  134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASH  213 (491)
T ss_pred             chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHH
Confidence            445556666666677777777777777776655 44411  222333566777778888888888888888888888888


Q ss_pred             HHHHHHHhCCCHHHHHHHHH
Q 025537          220 LQAACLFSLGMENDARETLK  239 (251)
Q Consensus       220 ~~g~~~~~~~~~~~A~~~~~  239 (251)
                      -++.++...|++.++.+.-.
T Consensus       214 a~aHVlem~~r~Keg~eFM~  233 (491)
T KOG2610|consen  214 AKAHVLEMNGRHKEGKEFMY  233 (491)
T ss_pred             HHHHHHHhcchhhhHHHHHH
Confidence            88888888888887776543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.83  E-value=0.022  Score=46.38  Aligned_cols=100  Identities=16%  Similarity=0.150  Sum_probs=81.5

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN----DMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..-...+.+.+..+++-|.....+..+.+   +......+|.++.++    +++..|.-.|+..-+..|-.+......
T Consensus       137 lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~  213 (299)
T KOG3081|consen  137 LEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQ  213 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccH
Confidence            3344455666777788888888888888887   345666778777763    468999999999888777789999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +.|...+|+|++|...++.+|.-+|++
T Consensus       214 Av~~l~~~~~eeAe~lL~eaL~kd~~d  240 (299)
T KOG3081|consen  214 AVCHLQLGRYEEAESLLEEALDKDAKD  240 (299)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence            999999999999999999999988875

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.75  E-value=0.016  Score=54.22  Aligned_cols=91  Identities=12%  Similarity=0.041  Sum_probs=80.4

Q ss_pred             HhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHH
Q 025537          157 FRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARE  236 (251)
Q Consensus       157 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~  236 (251)
                      ...++|.+|+...++.++..|+ ...+....|.++.++|+.++|....+..-...+++...+-.+-.+|..+|++++|..
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            3457999999999999999998 777888889999999999999965555555677888888999999999999999999


Q ss_pred             HHHHHHhhhhhc
Q 025537          237 TLKDGTNLEAKK  248 (251)
Q Consensus       237 ~~~~al~l~P~~  248 (251)
                      .|++++..+|+.
T Consensus        99 ~Ye~~~~~~P~e  110 (932)
T KOG2053|consen   99 LYERANQKYPSE  110 (932)
T ss_pred             HHHHHHhhCCcH
Confidence            999999999983

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=0.013  Score=47.71  Aligned_cols=101  Identities=9%  Similarity=0.004  Sum_probs=84.7

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hhCC--CChHHHHHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQ----VVSP--DWPTALYLQ  221 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~~p--~~~~~~~~~  221 (251)
                      ..+-..+.+.-.|+|.-.+..|.+.++.+|...+.+...++.+.++.|+.+.|-.+|+..-    +++.  .....+.+.
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            3445677788899999999999999999976688899999999999999999999999443    3333  245566778


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +.+|...++|.+|...|.++++.||++
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~  285 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRN  285 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCc
Confidence            888999999999999999999999975

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.72  E-value=0.0029  Score=55.55  Aligned_cols=81  Identities=15%  Similarity=0.068  Sum_probs=70.6

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHc---------cCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFID---------GGTM--------VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV  210 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~---------~~p~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  210 (251)
                      .+.+.|..+|+.|.|..++.+|.+|++         +.|.        -...+.+|.|..|+..|++..|.+.|.+|+..
T Consensus       285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v  364 (696)
T KOG2471|consen  285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV  364 (696)
T ss_pred             eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence            457899999999999999999999995         1221        14578899999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhC
Q 025537          211 SPDWPTALYLQAACLFSL  228 (251)
Q Consensus       211 ~p~~~~~~~~~g~~~~~~  228 (251)
                      .-.+|..|.+++.|..+.
T Consensus       365 fh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  365 FHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HhcCcHHHHHHHHHHHHH
Confidence            999999999999997653

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.71  E-value=0.0031  Score=50.20  Aligned_cols=60  Identities=12%  Similarity=-0.035  Sum_probs=55.6

Q ss_pred             HHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Q 025537          155 TAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP  215 (251)
Q Consensus       155 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  215 (251)
                      ..++.++.+.|.+.|.+|+++.|. ....|+.+|...-+.|+++.|...|.+.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            356789999999999999999998 999999999999999999999999999999999753

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.034  Score=44.86  Aligned_cols=96  Identities=19%  Similarity=0.113  Sum_probs=48.5

Q ss_pred             HHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCChHHHHH
Q 025537          151 KHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV-----SPDWPTALYL  220 (251)
Q Consensus       151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~  220 (251)
                      ..+..+...++|++|-.++.+|++....     .-+.+|-.-+.....+..+.++...+++|..+     .|+-+..-..
T Consensus        36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmale  115 (308)
T KOG1585|consen   36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALE  115 (308)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHH
Confidence            3333444456666666666666643321     01223333444444555666666666666554     2333333334


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          221 QAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       221 ~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      ++.=....-+.++|++.|++++.+-.
T Consensus       116 KAak~lenv~Pd~AlqlYqralavve  141 (308)
T KOG1585|consen  116 KAAKALENVKPDDALQLYQRALAVVE  141 (308)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence            44444455556666666666665543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.64  E-value=0.057  Score=40.81  Aligned_cols=85  Identities=19%  Similarity=0.085  Sum_probs=67.5

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  226 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  226 (251)
                      ..+.+........++.+++...+...--+.|. .+.+-..-|..++..|+|.+|+..++.+..-.|.++-+--.++.|++
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            34556666667777888888888887778887 88887778888888888888888888888888888877777888888


Q ss_pred             hCCCHH
Q 025537          227 SLGMEN  232 (251)
Q Consensus       227 ~~~~~~  232 (251)
                      .+|+.+
T Consensus        90 ~~~D~~   95 (160)
T PF09613_consen   90 ALGDPS   95 (160)
T ss_pred             HcCChH
Confidence            888865

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.60  E-value=0.023  Score=45.40  Aligned_cols=90  Identities=17%  Similarity=0.024  Sum_probs=65.3

Q ss_pred             HHHhhcCHHHHHHHHHHHHcc------CCCCCHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHhhCCC------Ch
Q 025537          155 TAFRAKDFSTAIDCYTQFIDG------GTMVSPTVYARRCLSYLMNDMP-------QEALGDAMQAQVVSPD------WP  215 (251)
Q Consensus       155 ~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~al~~~p~------~~  215 (251)
                      .+-....+++|+..|.-|+-.      +|..-+.++..+|=+|..+|+.       ..|+..|.+|+.....      ..
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~  165 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA  165 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence            444566788888888777632      2222356677778888888874       4466666666654432      26


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537          216 TALYLQAACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l  244 (251)
                      ...|.+|...+.+|++++|+.+|.+++..
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            78899999999999999999999999864

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.59  E-value=0.027  Score=45.13  Aligned_cols=104  Identities=14%  Similarity=0.054  Sum_probs=76.3

Q ss_pred             HHHHHHHHhHHHhh-cCHHHHHHHHHHHHccCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----
Q 025537          146 TLNSKKHGDTAFRA-KDFSTAIDCYTQFIDGGTMVSP-----TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-----  214 (251)
Q Consensus       146 a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----  214 (251)
                      |..+...|..|-.. .++++||.+|++|-+.-..+..     ..+...+..-..+++|.+||..|++.....-++     
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy  192 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY  192 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence            44555666666554 7899999999999875322122     345555666667899999999999988766555     


Q ss_pred             -hHH-HHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          215 -PTA-LYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       215 -~~~-~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                       ++- ++..|.|++-..+.-.+...+++..+++|.-.
T Consensus       193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence             333 45557777777999999999999999999754

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.59  E-value=0.015  Score=52.10  Aligned_cols=87  Identities=11%  Similarity=0.009  Sum_probs=76.2

Q ss_pred             hhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHhCCCHHH
Q 025537          158 RAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW----PTALYLQAACLFSLGMEND  233 (251)
Q Consensus       158 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~g~~~~~~~~~~~  233 (251)
                      ...+.+.|...+......-|+ ..-..+..|..+...|+.++|++.+++|+.....+    .-.+|.+|.++..+++|++
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~  323 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE  323 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence            355778899999999999998 88888999999999999999999999998755544    3457899999999999999


Q ss_pred             HHHHHHHHHhhh
Q 025537          234 ARETLKDGTNLE  245 (251)
Q Consensus       234 A~~~~~~al~l~  245 (251)
                      |..+|.+..+.+
T Consensus       324 A~~~f~~L~~~s  335 (468)
T PF10300_consen  324 AAEYFLRLLKES  335 (468)
T ss_pred             HHHHHHHHHhcc
Confidence            999999988754

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.025  Score=47.66  Aligned_cols=99  Identities=9%  Similarity=-0.017  Sum_probs=61.4

Q ss_pred             HHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC---hHHHHHHHHH
Q 025537          149 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV-SPDW---PTALYLQAAC  224 (251)
Q Consensus       149 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~~g~~  224 (251)
                      .-..+..++..|++.+|...+++.++-.|. +..++..--.+++.+|+...-...+++.+-. +|+-   .-.+-..+..
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg  184 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG  184 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence            334455566667777777777777777666 5555555555566667666666666666665 4444   2223334555


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +...|.|++|.+..++++++||.+
T Consensus       185 L~E~g~y~dAEk~A~ralqiN~~D  208 (491)
T KOG2610|consen  185 LEECGIYDDAEKQADRALQINRFD  208 (491)
T ss_pred             HHHhccchhHHHHHHhhccCCCcc
Confidence            667777777777777777777653

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.56  E-value=0.025  Score=45.34  Aligned_cols=100  Identities=13%  Similarity=0.037  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC-----CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCC----
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-----SPTVYARRCLSYLM-NDMPQEALGDAMQAQVVSPDW----  214 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~----  214 (251)
                      ++..-+-.+...|++.+..+|+.+++++|++-.+.     -+..+..+|.+|-. +.++++||..|++|-+.....    
T Consensus        72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s  151 (288)
T KOG1586|consen   72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS  151 (288)
T ss_pred             hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence            45555555666778889999999999999986530     12334566777764 588999999999998764432    


Q ss_pred             --hHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537          215 --PTALYLQAACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       215 --~~~~~~~g~~~~~~~~~~~A~~~~~~al~l  244 (251)
                        -+.+...+..-..+++|.+|+..|++...-
T Consensus       152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~  183 (288)
T KOG1586|consen  152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARS  183 (288)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              366777777788899999999999987654

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.56  E-value=0.02  Score=50.56  Aligned_cols=84  Identities=11%  Similarity=0.038  Sum_probs=58.3

Q ss_pred             HHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC-HHHHHHHHHHHHh
Q 025537          165 AIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM-ENDARETLKDGTN  243 (251)
Q Consensus       165 A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~  243 (251)
                      -...|+.|+...+. +..+|.+...-..+-+.+.+--..|.+++...|++++.|..-|.-.+..+. ++.|.+.|.++|+
T Consensus        90 Iv~lyr~at~rf~~-D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   90 IVFLYRRATNRFNG-DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            34567777766665 677776655544455557777777777777777777777777776666665 7777777777777


Q ss_pred             hhhhcc
Q 025537          244 LEAKKN  249 (251)
Q Consensus       244 l~P~~~  249 (251)
                      .+|++.
T Consensus       169 ~npdsp  174 (568)
T KOG2396|consen  169 FNPDSP  174 (568)
T ss_pred             cCCCCh
Confidence            777653

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=96.49  E-value=0.0013  Score=54.28  Aligned_cols=31  Identities=26%  Similarity=0.523  Sum_probs=27.6

Q ss_pred             HHHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           43 TELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      ..+..+..+|++.+|..||+|.+|+++|..+
T Consensus       253 ~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         253 DEVYDLMKLCWEAEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             HHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence            3577788899999999999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.48  E-value=0.014  Score=42.54  Aligned_cols=66  Identities=11%  Similarity=-0.007  Sum_probs=54.2

Q ss_pred             cCHHHHHHHHHHHHc-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          160 KDFSTAIDCYTQFID-GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       160 ~~~~~A~~~~~~al~-~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      .+-.+.|.+++..++ -.|...-+..+.++..++++|+|+.++.+++..++..|+|..+.-..-.+.
T Consensus        49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ie  115 (149)
T KOG3364|consen   49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIE  115 (149)
T ss_pred             HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence            456778999999986 566546678888999999999999999999999999999998866554443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.47  E-value=0.045  Score=48.19  Aligned_cols=97  Identities=13%  Similarity=-0.076  Sum_probs=80.1

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      +..+..-+....++.+...|...+-.||-..|.  ..++-.-...-.++++++.....|++-|+.+|.+..+|...|..-
T Consensus       404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK--~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE  481 (677)
T KOG1915|consen  404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK--DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE  481 (677)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence            445566677777888899999999999999986  444444455566889999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhh
Q 025537          226 FSLGMENDARETLKDGTNL  244 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l  244 (251)
                      ..+|+.+.|...|+-|+.-
T Consensus       482 ~~LgdtdRaRaifelAi~q  500 (677)
T KOG1915|consen  482 TSLGDTDRARAIFELAISQ  500 (677)
T ss_pred             HHhhhHHHHHHHHHHHhcC
Confidence            9999999999999988753

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.44  E-value=0.041  Score=45.93  Aligned_cols=100  Identities=11%  Similarity=-0.068  Sum_probs=81.3

Q ss_pred             HHHHHHhHHHh-hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHH
Q 025537          148 NSKKHGDTAFR-AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP---TALYLQAA  223 (251)
Q Consensus       148 ~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g~  223 (251)
                      .|...|...+. .++.+.|...|+.+++..|. +..+|..-...+..+++.+.|...|++++..-|...   ..|-....
T Consensus        37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~  115 (280)
T PF05843_consen   37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIE  115 (280)
T ss_dssp             HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            34455666555 57777799999999999998 999999888889999999999999999999877654   67777788


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          224 CLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .-...|+.+...+.++++.++.|+.
T Consensus       116 fE~~~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen  116 FESKYGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             HHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhhhh
Confidence            8888999999999999999998873

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.34  E-value=0.01  Score=33.67  Aligned_cols=29  Identities=17%  Similarity=0.075  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537          182 TVYARRCLSYLMNDMPQEALGDAMQAQVV  210 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~  210 (251)
                      .+++++|.+|..+|++++|+..+.+++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45566666666666666666666666554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.29  E-value=0.011  Score=33.49  Aligned_cols=31  Identities=23%  Similarity=0.223  Sum_probs=27.1

Q ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537          215 PTALYLQAACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                      ..++.++|.+|..+|++++|+..+++++++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3578899999999999999999999999874

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.27  E-value=0.02  Score=50.55  Aligned_cols=57  Identities=14%  Similarity=-0.050  Sum_probs=39.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 025537          185 ARRCLSYLMNDMPQEALGDAMQAQVVSPD--WPTALYLQAACLFSLGMENDARETLKDG  241 (251)
Q Consensus       185 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~~~~~~~~A~~~~~~a  241 (251)
                      ..+|.|..++|+.++|++.+...++..|.  +...++++-.++..++.|.++...+.+-
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            44577777777777777777777766654  4556777777777777777777666553

The molecular function of this protein is uncertain.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.077  Score=47.81  Aligned_cols=96  Identities=18%  Similarity=0.040  Sum_probs=81.9

Q ss_pred             HHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhhCCCChHHHHHH------HHH
Q 025537          152 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAM-QAQVVSPDWPTALYLQ------AAC  224 (251)
Q Consensus       152 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~-~al~~~p~~~~~~~~~------g~~  224 (251)
                      ....+...++...|+-....++..+|. +..++.+++.+....|..-.++..+. -+....|++......+      |..
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  151 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPE-NCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRY  151 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcc-cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHH
Confidence            455566778888899999999999998 99999999999988887655555555 4999999998887777      999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +..+|+..++.....++..+.|++
T Consensus       152 ~~~l~~~~~~~~~l~~~~d~~p~~  175 (620)
T COG3914         152 LKLLGRTAEAELALERAVDLLPKY  175 (620)
T ss_pred             HHHhccHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999976

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.10  E-value=0.011  Score=33.19  Aligned_cols=32  Identities=9%  Similarity=0.025  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          216 TALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      +.|..+|.+-...++|++|+.+|++||++.-+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~   33 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE   33 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            45777888888888888888888888877543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=96.05  E-value=0.022  Score=31.63  Aligned_cols=33  Identities=18%  Similarity=0.079  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHH--HHHHHhhhhhc
Q 025537          216 TALYLQAACLFSLGMENDARET--LKDGTNLEAKK  248 (251)
Q Consensus       216 ~~~~~~g~~~~~~~~~~~A~~~--~~~al~l~P~~  248 (251)
                      +.++.+|..++..|++++|+..  |+-+..++|+|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4566667777777777777777  44666666653

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.03  E-value=0.071  Score=43.75  Aligned_cols=73  Identities=21%  Similarity=0.162  Sum_probs=55.4

Q ss_pred             HHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          151 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      +.=..+...++++.|..+-.+.+.++|. ++.-+--+|.+|.++|-+.-|+++++..++.-|+.+.+-.-++..
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~-dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPE-DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCC-ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            3344566777888888888888888887 777777788888888888888888888888888877766555443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.02  E-value=0.037  Score=47.15  Aligned_cols=99  Identities=11%  Similarity=-0.047  Sum_probs=80.4

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV---------SPTVYARRCLSYLMNDMPQEALGDAMQAQVVS------  211 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------  211 (251)
                      +.+--.|..+-+.+||++|+.+..+|.++....         ...+.+.++.++..+|+.-.|.++|++|.++.      
T Consensus       163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr  242 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR  242 (518)
T ss_pred             ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence            345577888999999999999999998774210         13456778999999999999999999998763      


Q ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537          212 PDWPTALYLQAACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       212 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                      |-++....-+|.+|...|+.+.|..-|++|....
T Consensus       243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            3456667788999999999999999999987653

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.02  E-value=0.075  Score=45.43  Aligned_cols=102  Identities=14%  Similarity=0.027  Sum_probs=70.6

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHcc-CCC--------------------------------CCHHHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-GTM--------------------------------VSPTVYARRCLSYL  192 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~--------------------------------~~~~~~~~~a~~~~  192 (251)
                      +....+.+..+...|+..+|+..+...+.. ...                                ..+.++..+|.-..
T Consensus       184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~  263 (352)
T PF02259_consen  184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD  263 (352)
T ss_pred             cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence            455667777778888888888887777761 000                                01234555555555


Q ss_pred             hc------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHhhhhh
Q 025537          193 MN------DMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGME-----------------NDARETLKDGTNLEAK  247 (251)
Q Consensus       193 ~~------~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~-----------------~~A~~~~~~al~l~P~  247 (251)
                      .+      +.+++++..|.+|+.++|++.++|+..|..+..+-+.                 ..|+..|-+|+.+.|+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            55      6777888888899999998888888888877554222                 3488888888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.97  E-value=0.029  Score=46.00  Aligned_cols=67  Identities=16%  Similarity=-0.009  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ....|+=.+++..++++.|..+.++.+.++|.++.-+--+|.+|.++|.+.-|++++...++..|+.
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~  248 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD  248 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence            4456667788899999999999999999999999999999999999999999999999999998875

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.96  E-value=0.058  Score=37.06  Aligned_cols=57  Identities=21%  Similarity=0.160  Sum_probs=36.0

Q ss_pred             HHhhcCHHHHHHHHHHHHccCCCC---C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 025537          156 AFRAKDFSTAIDCYTQFIDGGTMV---S-----PTVYARRCLSYLMNDMPQEALGDAMQAQVVSP  212 (251)
Q Consensus       156 ~~~~~~~~~A~~~~~~al~~~p~~---~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  212 (251)
                      ..+.|+|.+|++.+.+.++.....   .     ..+..++|.++...|++++|+..+++|+++-.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            456778888877777766553210   1     24556667777777777777777777766543

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.95  E-value=0.089  Score=34.64  Aligned_cols=64  Identities=13%  Similarity=0.072  Sum_probs=50.4

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQAQVV  210 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~~  210 (251)
                      +....++|..++...+.++|+..++++++..++ ...   ++..+..+|...|+|.+++.+...=+.+
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455678899999999999999999999998765 544   4455677888899999988877665544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=95.94  E-value=0.0015  Score=54.06  Aligned_cols=31  Identities=32%  Similarity=0.518  Sum_probs=27.2

Q ss_pred             HHHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           43 TELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      ..+..+...|++.+|+.||+|.+++..|+.+
T Consensus       251 ~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~  281 (283)
T cd05080         251 QEVYILMKNCWETEAKFRPTFRSLIPILKEM  281 (283)
T ss_pred             HHHHHHHHHHhccChhhCCCHHHHHHHHHHh
Confidence            3466788899999999999999999999865

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.85  E-value=0.082  Score=51.07  Aligned_cols=97  Identities=14%  Similarity=0.020  Sum_probs=79.3

Q ss_pred             HHHhHHHhhcCHHHHHHHHHHHHccCCC--CCHHHHHHHHHHHHhc----C---CHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          151 KHGDTAFRAKDFSTAIDCYTQFIDGGTM--VSPTVYARRCLSYLMN----D---MPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~a~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .-.+++...+.|++|+..|++.-...|.  +..++.+..|.+.+..    |   .+.+|+..|++ +.-.|.-|--|...
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  558 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGK  558 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhH
Confidence            3456778889999999999999888885  2456778888887753    3   47788888877 44567778889999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |.+|..+|+|+|-+++|..|++.-|+.
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLLALKRYSQH  585 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999988874

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.80  E-value=0.17  Score=45.01  Aligned_cols=98  Identities=12%  Similarity=0.077  Sum_probs=74.9

Q ss_pred             HHHHhHHHhhcCHHHHHHHHHHHHccCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHh
Q 025537          150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTM-VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV-SPDWPTALYLQAACLFS  227 (251)
Q Consensus       150 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~g~~~~~  227 (251)
                      ...|..+-+.|+.++||+.|...++..|. .+..++.|+..+++.++.|.++.....+==++ -|+.+...|..+..-..
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR  342 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR  342 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence            45788888999999999999999988774 36679999999999999999998887773322 25666666766654322


Q ss_pred             -CCC---------------HHHHHHHHHHHHhhhhh
Q 025537          228 -LGM---------------ENDARETLKDGTNLEAK  247 (251)
Q Consensus       228 -~~~---------------~~~A~~~~~~al~l~P~  247 (251)
                       .++               -..|.+.+.+|.+.||.
T Consensus       343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH  378 (539)
T PF04184_consen  343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH  378 (539)
T ss_pred             hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence             222               23477889999999985

The molecular function of this protein is uncertain.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.80  E-value=0.18  Score=43.65  Aligned_cols=32  Identities=9%  Similarity=-0.039  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          216 TALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      +.+-.++.+....|++++|.+++++++++.|.
T Consensus       306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  306 WDVATLLEASVLAGDYEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence            33445566677788888899998888888775

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=95.71  E-value=0.0055  Score=51.00  Aligned_cols=33  Identities=30%  Similarity=0.405  Sum_probs=28.9

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+..+|++.+|..||++.+|.+.|..+...
T Consensus       253 ~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~~  285 (291)
T cd05094         253 EVYDIMLGCWQREPQQRLNIKEIYKILHALGKA  285 (291)
T ss_pred             HHHHHHHHHcccChhhCcCHHHHHHHHHHHHhh
Confidence            356788899999999999999999999988654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.71  E-value=0.02  Score=32.17  Aligned_cols=30  Identities=23%  Similarity=0.141  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 025537          182 TVYARRCLSYLMNDMPQEALGDAMQAQVVS  211 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  211 (251)
                      .+|..+|.+.+..++|.+|+.+|.+|+++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467788999999999999999999998864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.67  E-value=0.26  Score=42.62  Aligned_cols=97  Identities=16%  Similarity=0.094  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCL--SYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      +++..+...+....-.|+|+.|...|+.-+ -+|.  ......||.  .-..+|..+.|+.+...|-..-|.-++++--.
T Consensus       118 qepLIhlLeAQaal~eG~~~~Ar~kfeAMl-~dPE--tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~At  194 (531)
T COG3898         118 QEPLIHLLEAQAALLEGDYEDARKKFEAML-DDPE--TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARAT  194 (531)
T ss_pred             chHHHHHHHHHHHHhcCchHHHHHHHHHHh-cChH--HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHH
Confidence            345666777888888999999999998755 4553  233333333  33468999999999999999999999999998


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHh
Q 025537          222 AACLFSLGMENDARETLKDGTN  243 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~  243 (251)
                      -......|+++.|++..+...+
T Consensus       195 Le~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         195 LEARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             HHHHHhcCChHHHHHHHHHHHH
Confidence            8899999999999998876543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.65  E-value=0.29  Score=48.59  Aligned_cols=101  Identities=7%  Similarity=-0.082  Sum_probs=80.0

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      ....|...|..++++.+-++|...+.+|++.-|.. ...+....|+.-++.|+.+++...|+-.+.-+|...+.|.-...
T Consensus      1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence            45677788888888888888888888888887752 34566667888888888888888888888888888888888888


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhh
Q 025537          224 CLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~  245 (251)
                      .-...|+.+.+...|++++.+.
T Consensus      1643 ~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHccCCHHHHHHHHHHHHhcC
Confidence            8888888888888888887653

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.60  E-value=0.073  Score=36.57  Aligned_cols=60  Identities=20%  Similarity=0.118  Sum_probs=49.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCC---------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          189 LSYLMNDMPQEALGDAMQAQVVSPD---------WPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       189 ~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .-..+.|+|.+|++.+.+.......         ...+...+|.++...|++++|+..+++++++-.+.
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            3456899999998888887765332         24678889999999999999999999999987654

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.56  E-value=0.13  Score=42.04  Aligned_cols=86  Identities=10%  Similarity=0.010  Sum_probs=49.1

Q ss_pred             CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Q 025537          161 DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQ-EALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK  239 (251)
Q Consensus       161 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~  239 (251)
                      +..+-+++++..++-+|+ |..+|..|-.+.-.+|++. .-++.++.++..+.++-.+|-.+-.+....+.|+.-+....
T Consensus        93 dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~  171 (318)
T KOG0530|consen   93 DLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD  171 (318)
T ss_pred             HHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence            444555555555555555 5555555555555555555 55555566666555555566555555555555666555555


Q ss_pred             HHHhhhhh
Q 025537          240 DGTNLEAK  247 (251)
Q Consensus       240 ~al~l~P~  247 (251)
                      +.|+.|-.
T Consensus       172 ~Lle~Di~  179 (318)
T KOG0530|consen  172 ELLEEDIR  179 (318)
T ss_pred             HHHHHhhh
Confidence            55555443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.49  E-value=0.14  Score=37.46  Aligned_cols=70  Identities=13%  Similarity=0.039  Sum_probs=57.7

Q ss_pred             CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-hCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          180 SPTVYARRCLSYLMND---MPQEALGDAMQAQV-VSPD-WPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       180 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .....+++|-++....   +.++.|..++..++ -.|. .-...|.++..++.+++|+.|+.+.+.+|+.+|+|.
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~  105 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR  105 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence            4666778888877655   45778888888886 4443 467889999999999999999999999999999985

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.41  E-value=0.42  Score=40.77  Aligned_cols=107  Identities=17%  Similarity=0.120  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--C-C----
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV---SPTVYARRCLSYLMNDMPQEALGDAMQAQVV--S-P----  212 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~-p----  212 (251)
                      ...+..+...+..+.+.|+|+.|...+.++...++..   .+.+.+..+......|+..+|+...+..+.-  . +    
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~  222 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI  222 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence            3456788899999999999999999999999876321   4567778899999999999999998888771  1 0    


Q ss_pred             ---------------------------CChHHHHHHHHHHHhC------CCHHHHHHHHHHHHhhhhhcc
Q 025537          213 ---------------------------DWPTALYLQAACLFSL------GMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       213 ---------------------------~~~~~~~~~g~~~~~~------~~~~~A~~~~~~al~l~P~~~  249 (251)
                                                 ...++++.+|.-...+      +.++++...|.++++++|++.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  292 (352)
T PF02259_consen  223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE  292 (352)
T ss_pred             cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence                                       1246677778777777      889999999999999999764

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.37  E-value=0.32  Score=40.43  Aligned_cols=63  Identities=16%  Similarity=0.171  Sum_probs=37.4

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV  209 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  209 (251)
                      ...+.+.+..+...|+++.++..+++.+..+|. +-.+|..+-.+|++.|+...|+..|++.-.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            445555566666666666666666666666665 555666666666666666666665555433

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=95.31  E-value=0.0023  Score=53.23  Aligned_cols=31  Identities=23%  Similarity=0.413  Sum_probs=27.2

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQ   74 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~   74 (251)
                      .+..+...|++.+|..||++.+++..|..+.
T Consensus       257 ~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~  287 (290)
T cd05045         257 EMYNLMLTCWKQEPDKRPTFADISKELEKMM  287 (290)
T ss_pred             HHHHHHHHHccCCcccCCCHHHHHHHHHHHH
Confidence            4667788999999999999999999998764

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>PHA02988 hypothetical protein; Provisional

Probab=95.28  E-value=0.0076  Score=50.16  Aligned_cols=30  Identities=20%  Similarity=0.442  Sum_probs=26.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQ   74 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~   74 (251)
                      +..+..+|++.+|..||++.++++.|+.+.
T Consensus       251 l~~li~~cl~~dp~~Rps~~ell~~l~~~~  280 (283)
T PHA02988        251 IKCIVEACTSHDSIKRPNIKEILYNLSLYK  280 (283)
T ss_pred             HHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence            556677999999999999999999998764

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.28  E-value=0.41  Score=35.75  Aligned_cols=82  Identities=15%  Similarity=-0.079  Sum_probs=66.6

Q ss_pred             HHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCC
Q 025537          150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLG  229 (251)
Q Consensus       150 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~  229 (251)
                      .+.........+++++...+...--+-|+ .+.+-.--|..++..|+|.+|+..++...+-.+..+-+--.++.|++.+|
T Consensus        14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        14 IEVLMYALRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            33444445578888888888887778887 88888888888999999999999999988888888888888888888888


Q ss_pred             CHH
Q 025537          230 MEN  232 (251)
Q Consensus       230 ~~~  232 (251)
                      +.+
T Consensus        93 Dp~   95 (153)
T TIGR02561        93 DAE   95 (153)
T ss_pred             ChH
Confidence            875

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.21  E-value=0.44  Score=38.65  Aligned_cols=99  Identities=10%  Similarity=0.050  Sum_probs=43.8

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-----
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP-----  215 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----  215 (251)
                      |.....++......-+.++|+.+|++++.+-..     ...+.+...+.++.++..|.+|-..+.+-..+.-...     
T Consensus       110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~  189 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ  189 (308)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence            333344444444445555555555555543211     0123444455555555555555555555433332221     


Q ss_pred             -HHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537          216 -TALYLQAACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       216 -~~~~~~g~~~~~~~~~~~A~~~~~~al~l  244 (251)
                       +++...-.+|.-.++|..|..+|+.+-++
T Consensus       190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qi  219 (308)
T KOG1585|consen  190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQI  219 (308)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence             11222222333344555565555555443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.15  E-value=0.04  Score=49.69  Aligned_cols=100  Identities=8%  Similarity=-0.060  Sum_probs=85.7

Q ss_pred             HHHHHhHH-HhhcCHHHHHHHHHHHHccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537          149 SKKHGDTA-FRAKDFSTAIDCYTQFIDGGTMVS-PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  226 (251)
Q Consensus       149 ~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  226 (251)
                      +-..+..| -.+|+..+|+.+|..|+-..|..+ ..++..+|.++.+.|...+|--....|+.-.|..+.-+|-+|.++.
T Consensus       215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~a  294 (886)
T KOG4507|consen  215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYA  294 (886)
T ss_pred             HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHH
Confidence            33444444 458999999999999998876422 3577889999999999999988889999999998888999999999


Q ss_pred             hCCCHHHHHHHHHHHHhhhhhc
Q 025537          227 SLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       227 ~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ++|.|.....+|..+.+.+|.-
T Consensus       295 ml~~~N~S~~~ydha~k~~p~f  316 (886)
T KOG4507|consen  295 MLGEYNHSVLCYDHALQARPGF  316 (886)
T ss_pred             HHhhhhhhhhhhhhhhccCcch
Confidence            9999999999999999999853

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=95.09  E-value=0.0091  Score=48.80  Aligned_cols=30  Identities=20%  Similarity=0.366  Sum_probs=26.1

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+.++..+|+..+|..||++.+|++.|..+
T Consensus       236 ~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~  265 (267)
T cd08228         236 KLRELVSMCIYPDPDQRPDIGYVHQIAKQM  265 (267)
T ss_pred             HHHHHHHHHCCCCcccCcCHHHHHHHHHHh
Confidence            355677799999999999999999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.97  E-value=0.043  Score=27.92  Aligned_cols=24  Identities=25%  Similarity=0.301  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHH
Q 025537          216 TALYLQAACLFSLGMENDARETLK  239 (251)
Q Consensus       216 ~~~~~~g~~~~~~~~~~~A~~~~~  239 (251)
                      .+++.+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            456677777777777777776654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=94.87  E-value=0.017  Score=47.22  Aligned_cols=30  Identities=20%  Similarity=0.426  Sum_probs=25.4

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+..+..+|+..+|..||+|.+|.+.+..+
T Consensus       236 ~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~  265 (267)
T cd08229         236 ELRQLVNMCINPDPEKRPDITYVYDVAKRM  265 (267)
T ss_pred             HHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence            355667799999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.83  E-value=0.67  Score=38.52  Aligned_cols=80  Identities=6%  Similarity=-0.027  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 025537          162 FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDG  241 (251)
Q Consensus       162 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a  241 (251)
                      |..=+....++++..   ...++..++..+...|+++.+++.+++.+..+|.+-.+|..+-.+|+..|+...|+..|++.
T Consensus       137 f~~WV~~~R~~l~e~---~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l  213 (280)
T COG3629         137 FDEWVLEQRRALEEL---FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL  213 (280)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            666666666666554   56788889999999999999999999999999999999999999999999999999999987


Q ss_pred             Hhh
Q 025537          242 TNL  244 (251)
Q Consensus       242 l~l  244 (251)
                      -++
T Consensus       214 ~~~  216 (280)
T COG3629         214 KKT  216 (280)
T ss_pred             HHH
Confidence            663

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.77  E-value=0.45  Score=41.23  Aligned_cols=102  Identities=11%  Similarity=-0.058  Sum_probs=75.5

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHcc----CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH-HHhhCCCChHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDG----GTMVSPTVYARRCLSYLM---NDMPQEALGDAMQ-AQVVSPDWPTAL  218 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~  218 (251)
                      ....+.-..|-.-++|+.=+.+.+..=.+    -+. ...+-+..|.++.+   .|+.++|+..+.. ...-.+.+++.+
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~-~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVAN-QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhc-chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            34444455566677888888887764444    222 55667778888888   9999999999999 455566789999


Q ss_pred             HHHHHHHHh---------CCCHHHHHHHHHHHHhhhhhcc
Q 025537          219 YLQAACLFS---------LGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       219 ~~~g~~~~~---------~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      -..|.+|-.         ....++|+.+|.+|.+++|+.-
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y  260 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY  260 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence            888988743         2347899999999999998754

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=94.75  E-value=0.015  Score=44.42  Aligned_cols=30  Identities=13%  Similarity=0.228  Sum_probs=26.2

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+..+..+|+..+|..||++.+++..+..+
T Consensus       140 ~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~  169 (176)
T smart00750      140 SFADFMRVCASRLPQRREAANHYLAHCRAL  169 (176)
T ss_pred             hHHHHHHHHHhcccccccCHHHHHHHHHHH
Confidence            467788899999999999999999987654

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.68  E-value=0.46  Score=47.26  Aligned_cols=99  Identities=12%  Similarity=-0.026  Sum_probs=72.0

Q ss_pred             HHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHH
Q 025537          149 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD--WPTALYLQAACLF  226 (251)
Q Consensus       149 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~  226 (251)
                      |..+...|-+-+++++|.++|+..++..-+ ....|...+..+++..+-+.|-....+|++--|.  +.+..-.-|..-+
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQ-TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcc-hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence            344555666667777777777777776644 6677777777777777777777777777777776  6677677777777


Q ss_pred             hCCCHHHHHHHHHHHHhhhhhc
Q 025537          227 SLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       227 ~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +.|+.+.+...|+-.+.-.|+.
T Consensus      1612 k~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred             hcCCchhhHHHHHHHHhhCccc
Confidence            7777777777777777777764

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.68  E-value=0.92  Score=37.80  Aligned_cols=99  Identities=17%  Similarity=0.037  Sum_probs=75.5

Q ss_pred             HHHHHHHHHhHHHh----hcCHHHHHHHHHHHHccCCCCC-HHHHHHHHHHHHhc----C---CHHHHHHHHHHHHhhCC
Q 025537          145 ETLNSKKHGDTAFR----AKDFSTAIDCYTQFIDGGTMVS-PTVYARRCLSYLMN----D---MPQEALGDAMQAQVVSP  212 (251)
Q Consensus       145 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~-~~~~~~~a~~~~~~----~---~~~~A~~~~~~al~~~p  212 (251)
                      .+...+..|..++.    ..++.+|..+|.+|.+..-. . ..+..+++.+|..-    +   +...|+..+.+|-... 
T Consensus       108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~-~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-  185 (292)
T COG0790         108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV-EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-  185 (292)
T ss_pred             cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence            35567778888877    55999999999999998621 2 23377788887764    1   2347999999988877 


Q ss_pred             CChHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhhh
Q 025537          213 DWPTALYLQAACLFS----LGMENDARETLKDGTNLEA  246 (251)
Q Consensus       213 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~P  246 (251)
                       ++.+.+.+|.+|..    ..++.+|..+|.++-+...
T Consensus       186 -~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         186 -NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             -CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence             89999999988754    4488999999999987653

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=94.65  E-value=0.0033  Score=51.23  Aligned_cols=28  Identities=21%  Similarity=0.344  Sum_probs=24.8

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      +.++..+|++.+|.+||+|.+|++.|..
T Consensus       227 l~~li~~~~~~~p~~Rp~~~~i~~~l~~  254 (257)
T cd05116         227 MYDLMKLCWTYGVDERPGFAVVELRLRN  254 (257)
T ss_pred             HHHHHHHHhccCchhCcCHHHHHHHHhc
Confidence            4567779999999999999999999874

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.63  E-value=0.15  Score=42.17  Aligned_cols=62  Identities=13%  Similarity=-0.006  Sum_probs=53.6

Q ss_pred             HHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537          165 AIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  227 (251)
Q Consensus       165 A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  227 (251)
                      |..+|.+|+.+.|+ +...|+.+|.++...|+.=.|+-+|-+++-..--++.+.-++...+..
T Consensus         1 A~~~Y~~A~~l~P~-~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPS-NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TT-BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCC-CCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78899999999998 999999999999999999999999999998776788899998888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=94.61  E-value=0.016  Score=47.46  Aligned_cols=27  Identities=19%  Similarity=0.458  Sum_probs=23.4

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      +..+..+|++.+|+.||+|.+|..++.
T Consensus       242 l~~li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         242 VTDVITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             HHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence            455667999999999999999998874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.49  E-value=0.31  Score=42.20  Aligned_cols=96  Identities=13%  Similarity=0.019  Sum_probs=77.6

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------C-CCh
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVS-------P-DWP  215 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p-~~~  215 (251)
                      -..+.+.|..|...|+++.|+.+|.++-+.....  ....|.|.-.+-..+|+|.....+..+|...-       + -.+
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            3467789999999999999999999988887531  23577888888888999999999999887651       1 135


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 025537          216 TALYLQAACLFSLGMENDARETLKDG  241 (251)
Q Consensus       216 ~~~~~~g~~~~~~~~~~~A~~~~~~a  241 (251)
                      ++....|.+.+.+++|+.|.++|-.+
T Consensus       230 kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  230 KLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            67777899999999999999988755

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.47  E-value=0.17  Score=28.09  Aligned_cols=32  Identities=6%  Similarity=-0.112  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHH--HHHHHhhCCC
Q 025537          182 TVYARRCLSYLMNDMPQEALGD--AMQAQVVSPD  213 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~--~~~al~~~p~  213 (251)
                      +.++.+|..+...|++++|+..  |.-+..++|.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            3456667777777777777777  3366666654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.46  E-value=1.2  Score=37.18  Aligned_cols=99  Identities=17%  Similarity=0.140  Sum_probs=75.9

Q ss_pred             HHHHHHHHhHHHhhc-CHHHHHHHHHHHHcc----CCC---------CCHHHHHHHHHHHHhcCCHH---HHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAK-DFSTAIDCYTQFIDG----GTM---------VSPTVYARRCLSYLMNDMPQ---EALGDAMQAQ  208 (251)
Q Consensus       146 a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~----~p~---------~~~~~~~~~a~~~~~~~~~~---~A~~~~~~al  208 (251)
                      +..+++-|...++++ +|+.|+..+++|.++    .+.         ....++..++.+|+..+.++   +|+...+.+-
T Consensus        35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~  114 (278)
T PF08631_consen   35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE  114 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            678899999999999 999999999999987    221         01346777899999988764   4555555555


Q ss_pred             hhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537          209 VVSPDWPTALYLQAACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       209 ~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l  244 (251)
                      .-.|+.+..++..-.++...++.+++.+.+.+.+.-
T Consensus       115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen  115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            667888888866666666688888888888887754

It is also involved in sporulation [].

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.25  E-value=0.55  Score=40.06  Aligned_cols=107  Identities=6%  Similarity=-0.146  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHhHHHhhc------------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537          140 TSQMQETLNSKKHGDTAFRAK------------DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQA  207 (251)
Q Consensus       140 ~~~~~~a~~~~~~g~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  207 (251)
                      ..+|.+.+.+.+....--..-            -.+.-+..|++||+.+|+ +..++..+-.+..+..+-++...-++++
T Consensus        13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~   91 (321)
T PF08424_consen   13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEEL   91 (321)
T ss_pred             HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            346666776666654432221            145678899999999998 9988888888888888999999999999


Q ss_pred             HhhCCCChHHHHHHHHHH---HhCCCHHHHHHHHHHHHhhhhh
Q 025537          208 QVVSPDWPTALYLQAACL---FSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       208 l~~~p~~~~~~~~~g~~~---~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      +..+|+++..|...-...   +..-.+.+....|.+||+.-..
T Consensus        92 l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~  134 (321)
T PF08424_consen   92 LFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR  134 (321)
T ss_pred             HHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence            999999988886553332   2234688999999999976543

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.21  E-value=0.064  Score=44.83  Aligned_cols=77  Identities=3%  Similarity=0.027  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYAR-RCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYL  220 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  220 (251)
                      +.+...|.+-++-..+.|-|.+--..|.+++...|. |.++|.. -+.-+...++++.+...+.++++++|++|..|+.
T Consensus       104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~-nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL-NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence            344566666666677777888888888888888887 8888876 4455566788888888888888888888877653

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=94.13  E-value=0.086  Score=46.04  Aligned_cols=54  Identities=19%  Similarity=0.164  Sum_probs=26.6

Q ss_pred             HHHhhcCHHHHHHHHHHHHccCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025537          155 TAFRAKDFSTAIDCYTQFIDGGTM--------VSPTVYARRCLSYLMNDMPQEALGDAMQAQV  209 (251)
Q Consensus       155 ~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  209 (251)
                      .+.-.|||..|+...+. |+++..        -....++..|-+|+.+++|.+|+..|...+-
T Consensus       131 vh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  131 VHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566666655544 333211        0223445555555555566555555555544

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.98  E-value=0.27  Score=40.79  Aligned_cols=60  Identities=22%  Similarity=0.148  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 025537          183 VYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGT  242 (251)
Q Consensus       183 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  242 (251)
                      +++..+..|...|.+.+|++.+++++.++|-+-..+..+-.++..+|+--.|+.+|++.-
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            455568889999999999999999999999999999999999999999888988887653

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.87  E-value=0.81  Score=42.10  Aligned_cols=92  Identities=18%  Similarity=0.095  Sum_probs=74.7

Q ss_pred             HHHHHhHHHhh----c-CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCChHHHHH
Q 025537          149 SKKHGDTAFRA----K-DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND---MPQEALGDAMQAQVVSPDWPTALYL  220 (251)
Q Consensus       149 ~~~~g~~~~~~----~-~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~  220 (251)
                      ....|..|.+.    . ++..|+.+|.++-++.   ++.+-+.+|.+|..-.   ++..|..+|..|...  .+..+.++
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~  365 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR  365 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence            34566677663    2 7899999999999887   6677888899998765   578999999998775  48999999


Q ss_pred             HHHHHHhC----CCHHHHHHHHHHHHhhh
Q 025537          221 QAACLFSL----GMENDARETLKDGTNLE  245 (251)
Q Consensus       221 ~g~~~~~~----~~~~~A~~~~~~al~l~  245 (251)
                      +|.+|..-    .+...|..+|+++-+.+
T Consensus       366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  366 LALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            99988643    47899999999998877

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.79  E-value=0.7  Score=43.79  Aligned_cols=96  Identities=13%  Similarity=-0.042  Sum_probs=75.4

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHH----------ccCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFI----------DGGTM---------VSPTVYARRCLSYLMNDMPQEALGDAMQAQ  208 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al----------~~~p~---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  208 (251)
                      .|++.+..+-..++.+.|+++|+++=          .-+|.         .+..+|.-.|...-..|+.+.|+.+|..|-
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            67788888888899999999998752          22332         145677777887888999999999999874


Q ss_pred             h---------------------hCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 025537          209 V---------------------VSPDWPTALYLQAACLFSLGMENDARETLKDGTN  243 (251)
Q Consensus       209 ~---------------------~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  243 (251)
                      .                     -...+-.+-|.+|..|...|++.+|+..|.+|-.
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            3                     2345667889999999999999999999887754

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.65  E-value=0.55  Score=41.40  Aligned_cols=57  Identities=16%  Similarity=0.115  Sum_probs=37.3

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQ  206 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  206 (251)
                      .....+.-+|..|+|.++.-+-....+.+|  ++.+|--+|.|.+..++|.+|..++..
T Consensus       464 n~LaDAEyLysqgey~kc~~ys~WL~~iaP--S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAP--SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            444555556666777777766666666666  466666677777777777777666554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.61  E-value=1.5  Score=37.39  Aligned_cols=65  Identities=5%  Similarity=-0.172  Sum_probs=42.3

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhC
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM---NDMPQEALGDAMQAQVVS  211 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~  211 (251)
                      ..-+...-....+..+-++....+++++..+|+ +..+|...-.....   .-.+......|.+++..-
T Consensus        65 ~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L  132 (321)
T PF08424_consen   65 ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL  132 (321)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            333333333444555777788889999999998 88888654332222   235778888888887743

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.37  E-value=0.8  Score=37.56  Aligned_cols=92  Identities=14%  Similarity=-0.051  Sum_probs=78.3

Q ss_pred             HHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHH-H
Q 025537          156 AFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND-MPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMEN-D  233 (251)
Q Consensus       156 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~-~  233 (251)
                      +++...-..|+.+-..+|.++|. +.++|..|-.+...++ +..+-++.....++-+|++-..|..+-.+...+|++. .
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r  131 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR  131 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence            34456667899999999999998 9999999988888776 5688899999999999999999999999999999887 7


Q ss_pred             HHHHHHHHHhhhhhc
Q 025537          234 ARETLKDGTNLEAKK  248 (251)
Q Consensus       234 A~~~~~~al~l~P~~  248 (251)
                      -++..+.+|..+.+|
T Consensus       132 ELef~~~~l~~DaKN  146 (318)
T KOG0530|consen  132 ELEFTKLMLDDDAKN  146 (318)
T ss_pred             hHHHHHHHHhccccc
Confidence            777888888776654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=93.37  E-value=1.4  Score=31.65  Aligned_cols=64  Identities=8%  Similarity=-0.019  Sum_probs=44.8

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHH-------ccCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFI-------DGGTMVSPT----VYARRCLSYLMNDMPQEALGDAMQAQVV  210 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al-------~~~p~~~~~----~~~~~a~~~~~~~~~~~A~~~~~~al~~  210 (251)
                      +-.+--+...+...|+|++++..-.+++       +++.+ ...    +-++++.++-.+|+.++|+..|+.+-+.
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd-eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD-EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST-HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc-cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            4444556666778889988776666665       55544 443    4578999999999999999999998663

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.20  E-value=3.2  Score=32.55  Aligned_cols=97  Identities=16%  Similarity=0.035  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP--TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTAL  218 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~  218 (251)
                      +.+...++........+.. +.+....+-+..+|....  -+-..++..+...+++++|+...+.++...-+.   .-+-
T Consensus        51 ~~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~  129 (207)
T COG2976          51 QEASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAA  129 (207)
T ss_pred             HHHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHH
Confidence            3455555666556555555 555555665555544122  233557888999999999999999999765443   4566


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHH
Q 025537          219 YLQAACLFSLGMENDARETLKDG  241 (251)
Q Consensus       219 ~~~g~~~~~~~~~~~A~~~~~~a  241 (251)
                      .|+|.++..+|.+|+|+..+...
T Consensus       130 lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976         130 LRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhcc
Confidence            89999999999999999987643

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=93.14  E-value=1.9  Score=37.47  Aligned_cols=100  Identities=15%  Similarity=0.002  Sum_probs=76.6

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCC----ChHHHHHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP-TVYARRCLSYLMNDMPQEALGDAMQAQVV-SPD----WPTALYLQ  221 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~----~~~~~~~~  221 (251)
                      .+......+.++|.|..|.++-.-.+.+||..++ .+.+-+-...++.++|+--+..++..... ..+    -|..-|..
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~  184 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI  184 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence            3445566678899999999999999999997343 33444455556778888888888876552 112    34677899


Q ss_pred             HHHHHhCCCH---------------HHHHHHHHHHHhhhhh
Q 025537          222 AACLFSLGME---------------NDARETLKDGTNLEAK  247 (251)
Q Consensus       222 g~~~~~~~~~---------------~~A~~~~~~al~l~P~  247 (251)
                      +.+++.+++-               +.|...+.+|+...|.
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            9999999999               9999999999998884

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=93.13  E-value=0.021  Score=47.06  Aligned_cols=26  Identities=31%  Similarity=0.566  Sum_probs=22.7

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      .+..+..+|++.+|..||+|.+++..
T Consensus       228 ~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06642         228 PFKEFVEACLNKDPRFRPTAKELLKH  253 (277)
T ss_pred             HHHHHHHHHccCCcccCcCHHHHHHh
Confidence            45677789999999999999999874

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.11  E-value=1.3  Score=40.72  Aligned_cols=98  Identities=17%  Similarity=0.034  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHhHHHh-----hcCHHHHHHHHHHHHc----cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHh
Q 025537          144 QETLNSKKHGDTAFR-----AKDFSTAIDCYTQFID----GGTMVSPTVYARRCLSYLMND-----MPQEALGDAMQAQV  209 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~-----~~~~~~A~~~~~~al~----~~p~~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~  209 (251)
                      ..+......|..++.     .+|++.|+.+|..+.+    ..-...+.+.+.+|.+|++..     ++..|+..+.+|-.
T Consensus       242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~  321 (552)
T KOG1550|consen  242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE  321 (552)
T ss_pred             cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence            345555566666654     4689999999999987    111114567888999998843     67889999999888


Q ss_pred             hCCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHh
Q 025537          210 VSPDWPTALYLQAACLFSLG---MENDARETLKDGTN  243 (251)
Q Consensus       210 ~~p~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~  243 (251)
                      +.  ++.+.|.+|.++..-.   ++..|.++|..|..
T Consensus       322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~  356 (552)
T KOG1550|consen  322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK  356 (552)
T ss_pred             cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence            76  7889999999988766   57899999988864

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=92.97  E-value=0.065  Score=43.93  Aligned_cols=40  Identities=20%  Similarity=0.271  Sum_probs=26.3

Q ss_pred             cccccccccCCCCHHHHHHHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537           26 LLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL   70 (251)
Q Consensus        26 ~~~~d~~l~~~~~~~~~~~~~~va~~C~~~~p~~RP~m~~v~~~L   70 (251)
                      ..+.++.+...++. .   +..+...|+ .+|+.||++.+|++.|
T Consensus       227 ~~~~~~~~~~~~~~-~---~~~l~~~c~-~~P~~Rp~~~~i~~~l  266 (268)
T cd05086         227 VKLFKPQLELPYSE-R---WYEVLQFCW-LSPEKRATAEEVHRLL  266 (268)
T ss_pred             cccCCCccCCCCcH-H---HHHHHHHHh-hCcccCCCHHHHHHHh
Confidence            34556665444443 2   233445688 5699999999999887

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.93  E-value=1.5  Score=34.57  Aligned_cols=71  Identities=17%  Similarity=0.141  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHccCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHhCCCHHHHH
Q 025537          163 STAIDCYTQFIDGGTM-VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD----WPTALYLQAACLFSLGMENDAR  235 (251)
Q Consensus       163 ~~A~~~~~~al~~~p~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~g~~~~~~~~~~~A~  235 (251)
                      ++|...|-+ ++..|. +.+++.+.+|..|. ..+.++|+..+.+++++.+.    +++.+..++.+++.+|+++.|-
T Consensus       123 ~~A~~~fL~-~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQ-LEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHH-HcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            444444444 233332 14556666665443 55667777777777776443    3677777777777777777663

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.93  E-value=0.92  Score=39.44  Aligned_cols=89  Identities=11%  Similarity=-0.071  Sum_probs=68.2

Q ss_pred             hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC----HH
Q 025537          159 AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND--MPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM----EN  232 (251)
Q Consensus       159 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~----~~  232 (251)
                      ..-+++-+.+...+++.+|+ ...+|+.|.-++.+.+  +|..=+..|+++++.||.+..+|..+-.+......    ..
T Consensus        88 ~~~ld~eL~~~~~~L~~npk-sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~  166 (421)
T KOG0529|consen   88 QALLDEELKYVESALKVNPK-SYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK  166 (421)
T ss_pred             HHhhHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence            33567778888999999998 9999999999998776  37899999999999999998888776665544433    34


Q ss_pred             HHHHHHHHHHhhhhhc
Q 025537          233 DARETLKDGTNLEAKK  248 (251)
Q Consensus       233 ~A~~~~~~al~l~P~~  248 (251)
                      +=++...++|.-++.|
T Consensus       167 ~El~ftt~~I~~nfSN  182 (421)
T KOG0529|consen  167 EELEFTTKLINDNFSN  182 (421)
T ss_pred             hHHHHHHHHHhccchh
Confidence            5556666666655543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=92.89  E-value=0.88  Score=36.39  Aligned_cols=78  Identities=12%  Similarity=-0.080  Sum_probs=55.5

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-HHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP-TALY  219 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~  219 (251)
                      |-.+...|+....+.=+..|+..|.+|++....     ....+.+.+|..+.++|++++|+..|.+++...-... ....
T Consensus       125 AWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~  204 (214)
T PF09986_consen  125 AWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLK  204 (214)
T ss_pred             HHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHH
Confidence            444445555555555578899999999976532     1356778899999999999999999999988654333 3455


Q ss_pred             HHHH
Q 025537          220 LQAA  223 (251)
Q Consensus       220 ~~g~  223 (251)
                      .+|.
T Consensus       205 ~~AR  208 (214)
T PF09986_consen  205 DMAR  208 (214)
T ss_pred             HHHH
Confidence            5544

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=92.73  E-value=0.1  Score=43.04  Aligned_cols=30  Identities=17%  Similarity=0.514  Sum_probs=26.8

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+..+..+|++.+|..||++.+++..|+.+
T Consensus       254 ~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         254 EIYAIMKECWNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             HHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence            467788899999999999999999999765

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=92.63  E-value=0.12  Score=42.16  Aligned_cols=30  Identities=27%  Similarity=0.401  Sum_probs=26.7

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+.++..+|++.+|..||+|.+|++.|..+
T Consensus       238 ~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         238 AVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             HHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            467888899999999999999999998754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=92.59  E-value=1.5  Score=28.96  Aligned_cols=64  Identities=11%  Similarity=0.034  Sum_probs=50.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH---HHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          184 YARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYL---QAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       184 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ....|.=++...+.++|+....+|++..++.+..+--   +..+|...|+|.+++++--+-+++.-+
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~e   75 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEE   75 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666778889999999999999999887765544   456789999999999988777766544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.59  E-value=0.46  Score=41.87  Aligned_cols=52  Identities=17%  Similarity=0.124  Sum_probs=47.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Q 025537          188 CLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD  240 (251)
Q Consensus       188 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~  240 (251)
                      |.-++..|+|.++..+..-..++.| .+.+|-.+|.+++...+|++|..++..
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            4445679999999999999999999 999999999999999999999998764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=92.52  E-value=3.2  Score=36.30  Aligned_cols=100  Identities=16%  Similarity=0.040  Sum_probs=67.7

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCC---------
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-GTMVSPTVYARRCLSYL--MNDMPQEALGDAMQAQVVSPD---------  213 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~al~~~p~---------  213 (251)
                      +.....++..+|+.++|..|...++..+.. .+......+..++.+|.  ..-+|++|.+.+++.+...-.         
T Consensus       131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~  210 (379)
T PF09670_consen  131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLK  210 (379)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHH
Confidence            456678888999999999999999998885 44312345666655554  577889999998876642100         


Q ss_pred             --------------------C-h--HHHHHH------HHHHHhCCCHHHHHHHHHHHHhhh
Q 025537          214 --------------------W-P--TALYLQ------AACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       214 --------------------~-~--~~~~~~------g~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                                          . .  ..+..+      |.=....|+|++|..-+-+++|+-
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~  271 (379)
T PF09670_consen  211 ELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL  271 (379)
T ss_pred             HHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence                                0 0  012222      222346888999999999998874

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=92.26  E-value=0.54  Score=37.54  Aligned_cols=65  Identities=11%  Similarity=-0.027  Sum_probs=55.6

Q ss_pred             HHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Q 025537          151 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT  216 (251)
Q Consensus       151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  216 (251)
                      .-...+.+.+...+||.....-++.+|. ++.....+-..+.-.|+|++|+..++-+-.+.|++..
T Consensus         6 ~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455           6 DTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            3456788899999999999999999998 8877777777788899999999999999999998743

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.24  E-value=4.5  Score=35.31  Aligned_cols=94  Identities=15%  Similarity=0.070  Sum_probs=72.4

Q ss_pred             HHHhhcCHHH-HHHHHHHHHccCCCCCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          155 TAFRAKDFST-AIDCYTQFIDGGTMVSPTVYARRCLSYLMN------------DMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       155 ~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~~~a~~~~~~------------~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ..-..|.|+. +++.=.+.++.+|+ ...+|+-+-.++...            .-+++-+.....|++.+|+...+|+.+
T Consensus        37 ~~r~~~~yd~e~l~lt~~ll~~npe-~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR  115 (421)
T KOG0529|consen   37 KKREAKEYDEEHLELTSELLEKNPE-FYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHR  115 (421)
T ss_pred             HHHhccccchHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHH
Confidence            3344566654 77777888888997 778887765544332            235666788888999999999999999


Q ss_pred             HHHHHhCCC--HHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLGM--ENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~~--~~~A~~~~~~al~l~P~~~  249 (251)
                      ..++...+.  +..=++..+++|++||+|-
T Consensus       116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNf  145 (421)
T KOG0529|consen  116 KWVLQKNPHSDWNTELQLCEKALKQDPRNF  145 (421)
T ss_pred             HHHHHhCCCchHHHHHHHHHHHHhcCcccc
Confidence            999998776  5778889999999999864

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=92.19  E-value=0.13  Score=41.68  Aligned_cols=29  Identities=28%  Similarity=0.503  Sum_probs=25.8

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      .+..+..+|++.+|..||++.++.+.|+.
T Consensus       232 ~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~  260 (261)
T cd05148         232 EIYKIMLECWAAEPEDRPSFKALREELDN  260 (261)
T ss_pred             HHHHHHHHHcCCCchhCcCHHHHHHHHhc
Confidence            46678889999999999999999999975

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=92.18  E-value=1  Score=40.20  Aligned_cols=69  Identities=9%  Similarity=0.065  Sum_probs=57.1

Q ss_pred             HHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCChHHHHH
Q 025537          151 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM-PQEALGDAMQAQVVSPDWPTALYL  220 (251)
Q Consensus       151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~  220 (251)
                      .-.....+.+.|.+--..|.+++...|+ ++.+|..-|.-.+..+. .+.|...+.++|+.+|++++.|+-
T Consensus       110 ~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  110 SYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE  179 (568)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence            3333344445588888999999999999 99999988888887776 899999999999999999987753

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=92.17  E-value=0.15  Score=42.30  Aligned_cols=31  Identities=32%  Similarity=0.481  Sum_probs=27.5

Q ss_pred             HHHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           43 TELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      ..+..+..+|+..+|..||++.++++.|..+
T Consensus       261 ~~~~~li~~~l~~~p~~Rps~~eil~~l~~~  291 (293)
T cd05053         261 QELYHLMRDCWHEVPSQRPTFKQLVEDLDRM  291 (293)
T ss_pred             HHHHHHHHHHcccCcccCcCHHHHHHHHHHh
Confidence            3567788999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=92.16  E-value=0.15  Score=41.52  Aligned_cols=30  Identities=17%  Similarity=0.376  Sum_probs=25.9

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+..+..+|++.+|+.||++.++.+.|+.+
T Consensus       233 ~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         233 KVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             HHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence            355677799999999999999999998754

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.07  E-value=2.3  Score=38.01  Aligned_cols=98  Identities=15%  Similarity=0.119  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCC------
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP--TVYARRCLSYLMNDMPQEALGDAMQAQV-VSPDW------  214 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~------  214 (251)
                      ..+..+.-.|.-...-+.|+.|...|..|+++-...+-  .+-.|+|.+|+..|+-+    ++.++++ +.|.+      
T Consensus       365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~e----d~y~~ld~i~p~nt~s~ss  440 (629)
T KOG2300|consen  365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAE----DLYKALDLIGPLNTNSLSS  440 (629)
T ss_pred             hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHH----HHHHHHHhcCCCCCCcchH
Confidence            35778888999999999999999999999987543233  34466899999987643    3333333 45543      


Q ss_pred             ----hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537          215 ----PTALYLQAACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       215 ----~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                          ..++|-.|...+..+++.||.....+.|+..
T Consensus       441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence                4668888999999999999999999999875

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=92.05  E-value=0.15  Score=41.57  Aligned_cols=30  Identities=30%  Similarity=0.506  Sum_probs=26.6

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+.++..+|++.+|++||++.++.+.|..+
T Consensus       236 ~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         236 ALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             HHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            466788899999999999999999999764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=91.95  E-value=0.028  Score=45.60  Aligned_cols=26  Identities=27%  Similarity=0.533  Sum_probs=21.9

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      .+..+..+|++.+|..||+|.+|+..
T Consensus       228 ~~~~li~~~l~~~p~~Rp~~~~vl~~  253 (256)
T cd08218         228 DLRNLVSQLFKRNPRDRPSVNSILEK  253 (256)
T ss_pred             HHHHHHHHHhhCChhhCcCHHHHhhC
Confidence            35667779999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=91.91  E-value=0.14  Score=41.72  Aligned_cols=30  Identities=23%  Similarity=0.450  Sum_probs=26.3

Q ss_pred             HHHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           43 TELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      ..+..++.+|++.+|.+||+|.++...|+.
T Consensus       231 ~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~  260 (261)
T cd05068         231 KELYDIMLDCWKEDPDDRPTFETLQWKLED  260 (261)
T ss_pred             HHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence            346778889999999999999999999874

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=91.87  E-value=0.12  Score=42.24  Aligned_cols=26  Identities=19%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISL   70 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L   70 (251)
                      +..+...|+..+|.+||+|.++++.|
T Consensus       234 ~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  234 IYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             HHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHhcC
Confidence            55678899999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.76  E-value=0.27  Score=24.85  Aligned_cols=23  Identities=17%  Similarity=-0.018  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHH
Q 025537          183 VYARRCLSYLMNDMPQEALGDAM  205 (251)
Q Consensus       183 ~~~~~a~~~~~~~~~~~A~~~~~  205 (251)
                      +..++|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45666777777777777766543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=91.75  E-value=0.14  Score=42.50  Aligned_cols=28  Identities=21%  Similarity=0.457  Sum_probs=25.5

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      .+.++..+|++.+|..||+|.+|++.|.
T Consensus       267 ~l~~li~~~l~~~p~~RPs~~~i~~~l~  294 (295)
T cd05097         267 PVFKLMMRCWSRDIKDRPTFNKIHHFLR  294 (295)
T ss_pred             HHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence            5778889999999999999999999885

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=91.74  E-value=0.14  Score=42.48  Aligned_cols=26  Identities=19%  Similarity=0.497  Sum_probs=22.2

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      .+..+..+|++.+|..||+|.+++..
T Consensus       241 ~~~~li~~~l~~~p~~Rpt~~eil~~  266 (287)
T cd06621         241 EFKDFIKQCLEKDPTRRPTPWDMLEH  266 (287)
T ss_pred             HHHHHHHHHcCCCcccCCCHHHHHhC
Confidence            35567789999999999999998874

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=91.69  E-value=0.092  Score=42.91  Aligned_cols=25  Identities=24%  Similarity=0.502  Sum_probs=21.3

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      .+..+..+|++.+|.+||++.+++.
T Consensus       240 ~~~~li~~~l~~~p~~Rpt~~~ll~  264 (268)
T cd06624         240 EAKNFILRCFEPDPDKRASAHDLLQ  264 (268)
T ss_pred             HHHHHHHHHcCCCchhCCCHHHHHh
Confidence            3556778999999999999999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=91.66  E-value=0.51  Score=35.08  Aligned_cols=50  Identities=8%  Similarity=0.013  Sum_probs=37.5

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM  196 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~  196 (251)
                      ++...+++...+..|+|.-|..+.+.++..+|+ +..+..-++.++.++|.
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~-n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPD-NEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHH
Confidence            556777888888888888888888888888887 88888878877776654

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=91.64  E-value=0.16  Score=43.11  Aligned_cols=31  Identities=35%  Similarity=0.545  Sum_probs=27.4

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQ   74 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~   74 (251)
                      .+..+..+|++.+|..||++.++++.|+.+.
T Consensus       305 ~l~~li~~cl~~dp~~RPs~~el~~~l~~~~  335 (338)
T cd05102         305 EIYRIMLACWQGDPKERPTFSALVEILGDLL  335 (338)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            3567888999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=91.54  E-value=3.2  Score=36.19  Aligned_cols=95  Identities=11%  Similarity=0.089  Sum_probs=72.6

Q ss_pred             HHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhCCCChHHHHHHHHHHHhC
Q 025537          150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMP-QEALGDAMQAQVVSPDWPTALYLQAACLFSL  228 (251)
Q Consensus       150 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~  228 (251)
                      ...+..+|+.|+..++-..++.+.+.+|.  +.++.  .+++.+.|+- ..-++-.++...+.|++.+..+-.+.+-+.-
T Consensus       267 v~AAralf~d~~~rKg~~ilE~aWK~ePH--P~ia~--lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda  342 (531)
T COG3898         267 VVAARALFRDGNLRKGSKILETAWKAEPH--PDIAL--LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDA  342 (531)
T ss_pred             HHHHHHHHhccchhhhhhHHHHHHhcCCC--hHHHH--HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence            35567789999999999999999999885  44332  4445555653 3334555566778999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhhhhc
Q 025537          229 GMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       229 ~~~~~A~~~~~~al~l~P~~  248 (251)
                      |+|-.|...-+.+..+.|..
T Consensus       343 ~e~~~ARa~Aeaa~r~~pre  362 (531)
T COG3898         343 GEFSAARAKAEAAAREAPRE  362 (531)
T ss_pred             cchHHHHHHHHHHhhhCchh
Confidence            99999999999888888863

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=91.50  E-value=0.11  Score=42.58  Aligned_cols=26  Identities=19%  Similarity=0.447  Sum_probs=21.0

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      .+..+...|+..+|..||+|.+|+..
T Consensus       244 ~~~~li~~~l~~~p~~Rps~~~il~~  269 (272)
T cd06629         244 VALDFLNACFTINPDNRPTARELLQH  269 (272)
T ss_pred             HHHHHHHHHhcCChhhCCCHHHHhhC
Confidence            34456679999999999999998753

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=91.50  E-value=2.7  Score=38.92  Aligned_cols=101  Identities=10%  Similarity=-0.056  Sum_probs=82.0

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----------------VSPTVYARRCLSYLMNDMPQEALGDAMQAQ  208 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  208 (251)
                      +..+-+-|..-++.++++.|+.+...|......                 .+..+|...+...-..|-++.....|++.|
T Consensus       425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii  504 (835)
T KOG2047|consen  425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII  504 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            667788888889999999999999998855321                 023466666666667888888889999999


Q ss_pred             hhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          209 VVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       209 ~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      .+.---|..-.+.|..+..-..|++|.+.|++++.|.|
T Consensus       505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk  542 (835)
T KOG2047|consen  505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK  542 (835)
T ss_pred             HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence            99888888888989988888889999999999888764

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.48  E-value=1  Score=36.03  Aligned_cols=57  Identities=19%  Similarity=0.109  Sum_probs=27.7

Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          192 LMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       192 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ++-++..+||.....-++.+|.+......+-..|.-.|+|+.|...++-+-++.|+.
T Consensus        12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455          12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            334444455555554455555544444444444445555555555554444444443

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=91.47  E-value=0.08  Score=42.77  Aligned_cols=25  Identities=32%  Similarity=0.623  Sum_probs=21.1

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      .+..+..+|++.+|..||++.+++.
T Consensus       228 ~~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         228 EFNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             HHHHHHHHHHhcChhhCcCHHHHhc
Confidence            3556677999999999999999875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=91.40  E-value=0.17  Score=41.03  Aligned_cols=27  Identities=15%  Similarity=0.383  Sum_probs=24.4

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISL   70 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L   70 (251)
                      .+..+..+|++.+|..||+|.++++.|
T Consensus       229 ~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         229 TVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             HHHHHHHHHccCCcccCcCHHHHHHhh
Confidence            467888899999999999999999886

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=91.39  E-value=0.027  Score=45.69  Aligned_cols=26  Identities=23%  Similarity=0.391  Sum_probs=22.3

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      .+..+..+|++.+|..||+|.+|++.
T Consensus       237 ~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         237 ELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             HHHHHHHHHccCCcccCCCHHHHhhC
Confidence            45677889999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.39  E-value=0.33  Score=40.72  Aligned_cols=81  Identities=11%  Similarity=0.053  Sum_probs=66.5

Q ss_pred             HHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH-HHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          168 CYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYL-QAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       168 ~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      .|.++-...|. ++.+|...+.--.+.|.|.+--..|.+++...|.+++.|.. -+.=+...++++.+.+.|.++|+++|
T Consensus        95 ~~~R~tnkff~-D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~  173 (435)
T COG5191          95 ELYRSTNKFFN-DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS  173 (435)
T ss_pred             eeehhhhcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence            34455555566 78888877776677888999999999999999999999977 56668888999999999999999998


Q ss_pred             hcc
Q 025537          247 KKN  249 (251)
Q Consensus       247 ~~~  249 (251)
                      ++.
T Consensus       174 ~~p  176 (435)
T COG5191         174 RSP  176 (435)
T ss_pred             CCc
Confidence            753

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=91.33  E-value=0.17  Score=41.71  Aligned_cols=29  Identities=24%  Similarity=0.346  Sum_probs=25.7

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      .+..+...|++.+|..||++.+|.+.|..
T Consensus       254 ~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05048         254 RVYALMIECWNEIPARRPRFKDIHTRLRS  282 (283)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHHHHhc
Confidence            46677889999999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.33  E-value=0.45  Score=31.17  Aligned_cols=31  Identities=16%  Similarity=0.078  Sum_probs=20.5

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      .|..+..++..+=+.|+|.+|+.+|+++|++
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            3555666666677777777777777766643

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=91.30  E-value=0.16  Score=42.09  Aligned_cols=29  Identities=17%  Similarity=0.479  Sum_probs=25.9

Q ss_pred             HHHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           43 TELVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      ..+.++..+|++.+|..||++.++.+.|.
T Consensus       267 ~~l~~li~~cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         267 KDIYELMLECWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             HHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence            35788899999999999999999998874

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.26  E-value=0.81  Score=36.02  Aligned_cols=55  Identities=9%  Similarity=0.002  Sum_probs=44.1

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC---CCHHHHHHHHHHHHhcCCHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM---VSPTVYARRCLSYLMNDMPQEAL  201 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~a~~~~~~~~~~~A~  201 (251)
                      ++.....|..| .+.+.++|+.+|.+++++.+.   .+++++..++.+|+++|+++.|-
T Consensus       141 ~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  141 AELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            44445555544 478999999999999998542   47899999999999999999873

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=91.10  E-value=0.2  Score=40.77  Aligned_cols=31  Identities=26%  Similarity=0.473  Sum_probs=26.8

Q ss_pred             HHHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           43 TELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      ..+..+..+|++.+|.+||++.++...|..+
T Consensus       242 ~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         242 DELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            3567777899999999999999999998764

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=91.10  E-value=0.059  Score=44.37  Aligned_cols=27  Identities=26%  Similarity=0.479  Sum_probs=23.1

Q ss_pred             HHHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           43 TELVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        43 ~~~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      ..+..+...|++.+|..||++.+++..
T Consensus       227 ~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         227 KPFKEFIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             HHHHHHHHHHcccCcccCcCHHHHHhC
Confidence            446678889999999999999999765

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.06  E-value=3.2  Score=36.06  Aligned_cols=99  Identities=11%  Similarity=-0.077  Sum_probs=64.9

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc--------------CCC-----------CCHH---HHHHHHHHHHhcCC
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG--------------GTM-----------VSPT---VYARRCLSYLMNDM  196 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------------~p~-----------~~~~---~~~~~a~~~~~~~~  196 (251)
                      ....+.+.+..+..+|++..|-++.++||-.              ++.           +|..   +.+.......+.|-
T Consensus        39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~  118 (360)
T PF04910_consen   39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC  118 (360)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence            4667788888888888888888888888611              111           1222   33445666667788


Q ss_pred             HHHHHHHHHHHHhhCCC-ChH-HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 025537          197 PQEALGDAMQAQVVSPD-WPT-ALYLQAACLFSLGMENDARETLKDGTN  243 (251)
Q Consensus       197 ~~~A~~~~~~al~~~p~-~~~-~~~~~g~~~~~~~~~~~A~~~~~~al~  243 (251)
                      +..|++.|+-.+.+||. +|- +.+.+-....+.++|+--+..++....
T Consensus       119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            88888888888888887 543 334444444566777766666654443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=91.00  E-value=0.21  Score=41.33  Aligned_cols=28  Identities=29%  Similarity=0.369  Sum_probs=25.3

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      .+..+..+|++.+|..||++.++++.|+
T Consensus       260 ~l~~li~~~l~~~p~~Rpt~~el~~~l~  287 (288)
T cd05050         260 ELYNLMRLCWSKLPSDRPSFASINRILQ  287 (288)
T ss_pred             HHHHHHHHHcccCcccCCCHHHHHHHhh
Confidence            4667888999999999999999999986

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.97  E-value=2.6  Score=31.94  Aligned_cols=66  Identities=15%  Similarity=0.051  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ..+.....+-...++.+++...+.-.-.+.|.++..-..-|..+...|+|.+|+..|+...+-.|.
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~   76 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG   76 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence            445566667778889999999888888899999999999999999999999999999987765553

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=90.94  E-value=0.23  Score=41.14  Aligned_cols=33  Identities=33%  Similarity=0.371  Sum_probs=28.9

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+..+|++.+|.+||++.+|...|..+.+.
T Consensus       250 ~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~  282 (288)
T cd05093         250 EVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKA  282 (288)
T ss_pred             HHHHHHHHHccCChhhCCCHHHHHHHHHHHHHh
Confidence            367788899999999999999999999887644

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=90.88  E-value=0.2  Score=40.51  Aligned_cols=27  Identities=22%  Similarity=0.475  Sum_probs=24.4

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISL   70 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L   70 (251)
                      .+..++.+|++.+|..||++.++++.|
T Consensus       229 ~~~~l~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         229 SVYELMQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             HHHHHHHHHcccChhhCCCHHHHHHhh
Confidence            467789999999999999999999886

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=90.88  E-value=0.22  Score=40.42  Aligned_cols=29  Identities=31%  Similarity=0.445  Sum_probs=25.6

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      .+..+..+|+..+|++||++.++.+.|+.
T Consensus       232 ~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  260 (261)
T cd05072         232 ELYDIMKTCWKEKAEERPTFDYLQSVLDD  260 (261)
T ss_pred             HHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence            45677889999999999999999999874

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=90.85  E-value=0.15  Score=41.63  Aligned_cols=24  Identities=21%  Similarity=0.437  Sum_probs=19.0

Q ss_pred             HHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           47 RLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        47 ~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      .+...|. .+|.+||++.+|+..|.
T Consensus       245 ~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         245 EVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             HHHHHHh-cCcccCCCHHHHHHHhc
Confidence            3445777 57999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=90.70  E-value=1.1  Score=38.04  Aligned_cols=85  Identities=19%  Similarity=0.209  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHhCCCHHHHHHHH
Q 025537          161 DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV--SPDWPTALYLQAACLFSLGMENDARETL  238 (251)
Q Consensus       161 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~  238 (251)
                      +|..-..+|+-.....|  ++.+-.|++.+..+..=...++...+....-  =..+..+|--+|..+.++|+.++|...|
T Consensus       311 DW~~I~aLYdaL~~~ap--SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ay  388 (415)
T COG4941         311 DWPAIDALYDALEQAAP--SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAY  388 (415)
T ss_pred             ChHHHHHHHHHHHHhCC--CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHH
Confidence            44555566666666666  5777788998888777777777766654443  2246667778899999999999999999


Q ss_pred             HHHHhhhhh
Q 025537          239 KDGTNLEAK  247 (251)
Q Consensus       239 ~~al~l~P~  247 (251)
                      ++++.+.++
T Consensus       389 drAi~La~~  397 (415)
T COG4941         389 DRAIALARN  397 (415)
T ss_pred             HHHHHhcCC
Confidence            999999775

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=90.69  E-value=0.2  Score=42.54  Aligned_cols=82  Identities=13%  Similarity=-0.002  Sum_probs=67.6

Q ss_pred             HHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhC
Q 025537          149 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSL  228 (251)
Q Consensus       149 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~  228 (251)
                      ..+.+...++.+.+..|+..-..+++.++. ...+++.++..++.+.++++|+++...|....|++....-.+..+-...
T Consensus       278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s-~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~  356 (372)
T KOG0546|consen  278 RRNLAAVGLKVKGRGGARFRTNEALRDERS-KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK  356 (372)
T ss_pred             ccchHHhcccccCCCcceeccccccccChh-hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence            334566677888888888888888888877 8899999999999999999999999999999999987766666555554


Q ss_pred             CCH
Q 025537          229 GME  231 (251)
Q Consensus       229 ~~~  231 (251)
                      .++
T Consensus       357 ~~~  359 (372)
T KOG0546|consen  357 KQY  359 (372)
T ss_pred             HHH
Confidence            444

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=90.62  E-value=0.18  Score=43.70  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=27.3

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      +..+..+|...+|..||++.+++..|+.+....
T Consensus       275 l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~~  307 (362)
T KOG0192|consen  275 LSSLMERCWLVDPSRRPSFLEIVSRLESIMSHI  307 (362)
T ss_pred             HHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHhh
Confidence            445555699999999999999999999876543

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=90.54  E-value=0.23  Score=40.22  Aligned_cols=30  Identities=17%  Similarity=0.310  Sum_probs=26.7

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+..+..+|++.+|+.||++.++.+.|..+
T Consensus       226 ~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~  255 (257)
T cd05060         226 EIYSIMLSCWKYRPEDRPTFSELESTFRRD  255 (257)
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHHHHHHhc
Confidence            456788899999999999999999999865

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=90.51  E-value=0.099  Score=42.73  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=20.6

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..||++.+++.
T Consensus       245 ~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         245 FQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             HHHHHHHHcCCChhhCCCHHHHhh
Confidence            556777999999999999998864

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=90.49  E-value=0.25  Score=40.58  Aligned_cols=31  Identities=29%  Similarity=0.501  Sum_probs=27.1

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQ   74 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~   74 (251)
                      .+..+..+|++.+|+.||++.++++.|..+.
T Consensus       247 ~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~  277 (280)
T cd05043         247 ELFAVMACCWALDPEERPSFSQLVQCLTDFH  277 (280)
T ss_pred             HHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence            3567788999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=90.47  E-value=0.25  Score=42.19  Aligned_cols=32  Identities=25%  Similarity=0.409  Sum_probs=28.0

Q ss_pred             HHHHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537           43 TELVRLASRCLQSEARERPNAKSLVISLMSLQ   74 (251)
Q Consensus        43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~   74 (251)
                      ..+..++.+|++.+|.+||++.++++.|..+-
T Consensus       303 ~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~  334 (337)
T cd05054         303 PEIYSIMLDCWHNNPEDRPTFSELVEILGDLL  334 (337)
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            34678889999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=90.44  E-value=0.25  Score=40.30  Aligned_cols=31  Identities=23%  Similarity=0.398  Sum_probs=27.5

Q ss_pred             HHHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           43 TELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      ..+.++..+|++.+|+.||++.++...|+.+
T Consensus       242 ~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         242 EDVYELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            3577888899999999999999999999764

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=90.36  E-value=0.26  Score=39.86  Aligned_cols=25  Identities=24%  Similarity=0.466  Sum_probs=21.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+..+|++.+|..||++.+++..
T Consensus       228 ~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         228 LRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             HHHHHHHHHhCCcccCCCHHHHhhc
Confidence            4556679999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=90.32  E-value=0.26  Score=40.34  Aligned_cols=30  Identities=27%  Similarity=0.550  Sum_probs=26.9

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+..+..+|++.+|..||++.+++..|..+
T Consensus       239 ~~~~li~~~l~~~p~~Rps~~~il~~l~~~  268 (270)
T cd05047         239 EVYDLMRQCWREKPYERPSFAQILVSLNRM  268 (270)
T ss_pred             HHHHHHHHHcccChhhCCCHHHHHHHHHHh
Confidence            466888899999999999999999999765

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.30  E-value=2.2  Score=32.99  Aligned_cols=66  Identities=11%  Similarity=-0.055  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537          180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD---WPTALYLQAACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                      -..++..+|..|.+.|++++|++.|.++......   -...++.+-.+....+++........++-.+-
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            3578889999999999999999999998886533   25777888888999999999999988886553

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=90.30  E-value=0.27  Score=39.86  Aligned_cols=31  Identities=19%  Similarity=0.338  Sum_probs=27.1

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQ   74 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~   74 (251)
                      .+..+...|++.+|+.||++.+++..|..+.
T Consensus       230 ~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~  260 (262)
T cd05058         230 PLYEVMLSCWHPKPEMRPTFSELVSRIEQIF  260 (262)
T ss_pred             HHHHHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence            4667888999999999999999999998653

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.22  E-value=0.89  Score=41.81  Aligned_cols=67  Identities=7%  Similarity=0.032  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPD------WPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .++.|-|.-+++.++|..+++.|...++.-|.      +++..-.+..||..+.+.|.|.+.+.+|=+.+|++
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~  427 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS  427 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence            34556788889999999999999999987664      57888889999999999999999999999999874

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=90.18  E-value=0.3  Score=39.86  Aligned_cols=30  Identities=27%  Similarity=0.407  Sum_probs=26.1

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+..+..+|++.+|.+||++.++.+.|..+
T Consensus       242 ~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         242 GLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             HHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            356788899999999999999999998753

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=90.12  E-value=0.29  Score=40.84  Aligned_cols=33  Identities=27%  Similarity=0.362  Sum_probs=27.9

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+..+|++.+|..||+|.++++.|..+...
T Consensus       267 ~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~  299 (304)
T cd05101         267 ELYMMMRDCWHAIPSHRPTFKQLVEDLDRILTL  299 (304)
T ss_pred             HHHHHHHHHcccChhhCCCHHHHHHHHHHHHHh
Confidence            455677899999999999999999999876543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=90.10  E-value=0.29  Score=40.72  Aligned_cols=29  Identities=28%  Similarity=0.568  Sum_probs=25.6

Q ss_pred             HHHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           43 TELVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      ..+.++..+|++.+|..||+|.+|.+.|.
T Consensus       267 ~~~~~li~~cl~~~p~~Rp~~~~i~~~l~  295 (296)
T cd05095         267 DSLYKLMLSCWRRNAKERPSFQEIHATLL  295 (296)
T ss_pred             HHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence            35667888999999999999999999885

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=90.07  E-value=0.9  Score=29.06  Aligned_cols=31  Identities=19%  Similarity=0.281  Sum_probs=24.1

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      .|..+..+|..+=+.|+|++|+.+|.++++.
T Consensus         4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    4 KAIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4556667777777888999999988888754

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.96  E-value=0.57  Score=30.69  Aligned_cols=32  Identities=13%  Similarity=0.009  Sum_probs=25.6

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG  176 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  176 (251)
                      .+..+..+|...=..|+|++|+.+|.+||+..
T Consensus         5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~   36 (75)
T cd02680           5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELC   36 (75)
T ss_pred             HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence            46666777777788899999999999998763

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=89.96  E-value=0.31  Score=39.76  Aligned_cols=30  Identities=33%  Similarity=0.489  Sum_probs=26.1

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+..+..+|++.+|..||+|.++++.|..+
T Consensus       237 ~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         237 ALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             HHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence            456788899999999999999999998753

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=89.93  E-value=0.32  Score=40.12  Aligned_cols=30  Identities=17%  Similarity=0.428  Sum_probs=26.8

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+..+..+|++.+|.+||++.+++..|+.+
T Consensus       254 ~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         254 EVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             HHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            577788899999999999999999998764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.88  E-value=1.3  Score=36.97  Aligned_cols=54  Identities=24%  Similarity=0.203  Sum_probs=48.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Q 025537          187 RCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD  240 (251)
Q Consensus       187 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~  240 (251)
                      -+.-.+..|++.+|...+..++..+|.+.++...++.+|...|++++|...+..
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            455667799999999999999999999999999999999999999999886654

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=89.75  E-value=5.2  Score=33.26  Aligned_cols=81  Identities=19%  Similarity=0.094  Sum_probs=65.9

Q ss_pred             CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCC-------
Q 025537          161 DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLG-------  229 (251)
Q Consensus       161 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-------  229 (251)
                      +...|+..|.++-...   +..+.+++|.+|..    -.++.+|+..|.+|-+...  ..+.+.++ +++..|       
T Consensus       170 ~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~  243 (292)
T COG0790         170 DDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAA  243 (292)
T ss_pred             HHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhh
Confidence            3458999999988876   67888899988865    3489999999999999887  89999999 777666       


Q ss_pred             --------CHHHHHHHHHHHHhhhhh
Q 025537          230 --------MENDARETLKDGTNLEAK  247 (251)
Q Consensus       230 --------~~~~A~~~~~~al~l~P~  247 (251)
                              +...|...|.++....+.
T Consensus       244 ~~~~~~~~~~~~a~~~~~~~~~~~~~  269 (292)
T COG0790         244 FLTAAKEEDKKQALEWLQKACELGFD  269 (292)
T ss_pred             hcccccCCCHHHHHHHHHHHHHcCCh
Confidence                    788888888887765543

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=89.70  E-value=0.16  Score=41.15  Aligned_cols=25  Identities=24%  Similarity=0.582  Sum_probs=21.5

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      .+..+..+|+..+|..||++.+++.
T Consensus       235 ~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         235 VFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             HHHHHHHHHcCCChhhCCCHHHHhc
Confidence            4567788999999999999998864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=89.68  E-value=0.096  Score=43.29  Aligned_cols=26  Identities=27%  Similarity=0.519  Sum_probs=22.3

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      .+.++..+|++.+|..||++.+|+..
T Consensus       242 ~l~~li~~~l~~~p~~Rpt~~~i~~~  267 (288)
T cd06616         242 SFVNFINLCLIKDESKRPKYKELLEH  267 (288)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHhcC
Confidence            46677779999999999999998764

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=89.53  E-value=0.41  Score=39.44  Aligned_cols=32  Identities=16%  Similarity=0.371  Sum_probs=27.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+..+|+..+|..||++.++++.|..+.+.
T Consensus       240 ~~~li~~c~~~~p~~Rps~~el~~~l~~~~~~  271 (279)
T cd05111         240 VYMVMVKCWMIDENVRPTFKELANEFTRMARD  271 (279)
T ss_pred             HHHHHHHHcCCCcccCcCHHHHHHHHHHHHhC
Confidence            45567799999999999999999999876543

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=89.49  E-value=0.32  Score=40.03  Aligned_cols=28  Identities=21%  Similarity=0.254  Sum_probs=25.0

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      .+..+...|++.+|.+||++.+++..|+
T Consensus       254 ~~~~li~~cl~~~p~~RP~~~~i~~~l~  281 (283)
T cd05091         254 WVYTLMLECWNEFPSRRPRFKDIHSRLR  281 (283)
T ss_pred             HHHHHHHHHhCCCcccCCCHHHHHHHhh
Confidence            3667888999999999999999999885

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=89.44  E-value=0.31  Score=40.67  Aligned_cols=28  Identities=29%  Similarity=0.472  Sum_probs=24.8

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      .+.++..+|++.+|..||+|.+|.+.|+
T Consensus       276 ~~~~li~~cl~~~p~~RPs~~~i~~~l~  303 (304)
T cd05096         276 GLYELMLQCWSRDCRERPSFSDIHAFLT  303 (304)
T ss_pred             HHHHHHHHHccCCchhCcCHHHHHHHHh
Confidence            4667888999999999999999998875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=89.38  E-value=0.29  Score=39.70  Aligned_cols=27  Identities=26%  Similarity=0.520  Sum_probs=24.4

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISL   70 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L   70 (251)
                      .+..+..+|+..+|++||+|.+++..|
T Consensus       229 ~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         229 EVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence            467788899999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=89.38  E-value=0.38  Score=40.24  Aligned_cols=33  Identities=27%  Similarity=0.378  Sum_probs=28.2

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+...|++.+|.+||+|.+|+..|..+...
T Consensus       270 ~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~  302 (307)
T cd05098         270 ELYMMMRDCWHAVPSQRPTFKQLVEDLDRILAL  302 (307)
T ss_pred             HHHHHHHHHcccChhhCcCHHHHHHHHHHHHHH
Confidence            455678899999999999999999999877544

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=89.35  E-value=0.19  Score=40.95  Aligned_cols=24  Identities=29%  Similarity=0.613  Sum_probs=20.4

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..||++.+++.
T Consensus       238 ~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         238 AIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             HHHHHHHHhcCCcccCCCHHHHhc
Confidence            456677999999999999998864

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=89.35  E-value=0.41  Score=38.81  Aligned_cols=30  Identities=27%  Similarity=0.548  Sum_probs=26.3

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+..+..+|+..+|..||++.+++++|..+
T Consensus       236 ~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~  265 (267)
T cd08224         236 ELRDLVSRCINPDPEKRPDISYVLQVAKEM  265 (267)
T ss_pred             HHHHHHHHHcCCCcccCCCHHHHHHHHHHh
Confidence            455677899999999999999999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=89.33  E-value=0.29  Score=42.55  Aligned_cols=29  Identities=21%  Similarity=0.448  Sum_probs=25.5

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      .+..+..+|++.+|+.||+|.++++.|+.
T Consensus       345 ~l~~li~~cl~~dP~~RPs~~eil~~l~~  373 (375)
T cd05104         345 EMYDIMKSCWDADPLKRPTFKQIVQLIEQ  373 (375)
T ss_pred             HHHHHHHHHccCChhHCcCHHHHHHHHHh
Confidence            35567789999999999999999999874

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.29  E-value=1.4  Score=32.75  Aligned_cols=54  Identities=22%  Similarity=0.108  Sum_probs=44.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHH
Q 025537          180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMEND  233 (251)
Q Consensus       180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~  233 (251)
                      .......++...+..|+|.-|++.++.++..+|++..+...++.++.++|.-.+
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            456677788888899999999999999999999999999999999998876543

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=89.23  E-value=0.086  Score=42.37  Aligned_cols=25  Identities=28%  Similarity=0.630  Sum_probs=21.0

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      .+..+..+|+..+|..||++.+++.
T Consensus       232 ~l~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         232 EAKDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             HHHHHHHHhCcCChhhCCCHHHHhh
Confidence            3555667999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.23  E-value=0.82  Score=30.14  Aligned_cols=31  Identities=23%  Similarity=0.233  Sum_probs=22.5

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      .+..+..+|..+=+.|+|++|+.+|.++|+.
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~   35 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL   35 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3556667777777788888888888777643

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=89.17  E-value=0.39  Score=39.21  Aligned_cols=30  Identities=30%  Similarity=0.380  Sum_probs=25.9

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+.++...|++.+|..||++.++.+.|..+
T Consensus       236 ~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         236 LLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             HHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence            466678899999999999999999998653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=89.06  E-value=0.33  Score=39.22  Aligned_cols=29  Identities=24%  Similarity=0.421  Sum_probs=25.3

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      .+..+..+|+..+|..||++.+++..|..
T Consensus       227 ~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  255 (256)
T cd05039         227 EVYKVMKDCWELDPAKRPTFKQLREQLAL  255 (256)
T ss_pred             HHHHHHHHHhccChhhCcCHHHHHHHHhc
Confidence            45667788999999999999999999864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=89.06  E-value=0.34  Score=39.06  Aligned_cols=29  Identities=24%  Similarity=0.478  Sum_probs=25.4

Q ss_pred             HHHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           43 TELVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      ..+..+..+|++.+|..||++.++.++|.
T Consensus       223 ~~~~~li~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         223 DAVYRLMERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence            34667888999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=89.03  E-value=0.37  Score=39.31  Aligned_cols=30  Identities=27%  Similarity=0.447  Sum_probs=25.9

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+..+...|++.+|.+||+|.+++..|+.+
T Consensus       239 ~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         239 ALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            356788899999999999999999998753

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.95  E-value=0.9  Score=29.85  Aligned_cols=31  Identities=10%  Similarity=0.074  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      .|..+..++..+=+.|+|++|+.+|..+|+.
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3556667777777888888888888888754

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=88.95  E-value=0.47  Score=39.87  Aligned_cols=33  Identities=30%  Similarity=0.424  Sum_probs=28.3

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+..+|++.+|..||++.++++.|..+...
T Consensus       264 ~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~~  296 (314)
T cd05099         264 ELYMLMRECWHAVPTQRPTFKQLVEALDKVLAA  296 (314)
T ss_pred             HHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHH
Confidence            455778899999999999999999999877544

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=88.83  E-value=0.36  Score=39.05  Aligned_cols=29  Identities=21%  Similarity=0.298  Sum_probs=25.3

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      .+..+..+|++.+|+.||++.+++..|..
T Consensus       227 ~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  255 (256)
T cd05082         227 VVYDVMKQCWHLDAATRPSFLQLREQLEH  255 (256)
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHHHHHhc
Confidence            35567789999999999999999999865

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=88.81  E-value=0.36  Score=41.24  Aligned_cols=32  Identities=28%  Similarity=0.426  Sum_probs=27.7

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      .+.++...|++.+|..||++.++++.|..+.+
T Consensus       310 ~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         310 EMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            46678889999999999999999999987643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=88.66  E-value=0.34  Score=39.79  Aligned_cols=28  Identities=25%  Similarity=0.407  Sum_probs=24.9

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      .+..+..+|++.+|.+||++.+++..|+
T Consensus       249 ~~~~li~~~l~~~p~~Rps~~e~l~~l~  276 (277)
T cd05062         249 MLFELMRMCWQYNPKMRPSFLEIISSIK  276 (277)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHhh
Confidence            4667888999999999999999999875

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=88.62  E-value=0.52  Score=38.00  Aligned_cols=93  Identities=16%  Similarity=0.070  Sum_probs=56.6

Q ss_pred             HHhhcCHHHHHHHHHHHHccC---CCC----C----HHHHHHHHHHHHhcCCH-HHH-HHHHHHHHh-h-CCCC--hHHH
Q 025537          156 AFRAKDFSTAIDCYTQFIDGG---TMV----S----PTVYARRCLSYLMNDMP-QEA-LGDAMQAQV-V-SPDW--PTAL  218 (251)
Q Consensus       156 ~~~~~~~~~A~~~~~~al~~~---p~~----~----~~~~~~~a~~~~~~~~~-~~A-~~~~~~al~-~-~p~~--~~~~  218 (251)
                      +|..|+|+.|++....||+.+   |+.    .    ++-...-+......|.. +-. ...+..... . -|+.  ++.|
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~  172 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY  172 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence            467899999999999999875   320    1    12233445555556652 222 222222211 1 2333  3445


Q ss_pred             HHHHHHHH---------hCCCHHHHHHHHHHHHhhhhhc
Q 025537          219 YLQAACLF---------SLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       219 ~~~g~~~~---------~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      -..|..+.         ..++...|+.++++|+++||+-
T Consensus       173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~  211 (230)
T PHA02537        173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC  211 (230)
T ss_pred             HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence            55566662         4568889999999999999974

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=88.62  E-value=0.42  Score=38.41  Aligned_cols=29  Identities=21%  Similarity=0.457  Sum_probs=25.5

Q ss_pred             HHHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           43 TELVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      ..+..+..+|++.+|.+||++.++.+.|.
T Consensus       221 ~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         221 DDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             HHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence            45677888999999999999999999874

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=88.60  E-value=0.32  Score=39.49  Aligned_cols=27  Identities=30%  Similarity=0.609  Sum_probs=24.1

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISL   70 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L   70 (251)
                      .+..+...|++.+|+.||++.++++.|
T Consensus       231 ~~~~li~~~l~~~p~~Rps~~~il~~l  257 (258)
T cd05078         231 ELANLINQCMDYEPDFRPSFRAIIRDL  257 (258)
T ss_pred             HHHHHHHHHhccChhhCCCHHHHHHhc
Confidence            466788899999999999999999886

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.49  E-value=0.89  Score=29.76  Aligned_cols=56  Identities=16%  Similarity=0.040  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537          163 STAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  227 (251)
Q Consensus       163 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  227 (251)
                      +.|..+..+|++.|-.  ..  +.=|..     .|++|++.+.+++...|+.+.....+..+..-
T Consensus         4 ~~A~~~a~~AVe~D~~--gr--~~eAi~-----~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY   59 (75)
T cd02682           4 EMARKYAINAVKAEKE--GN--AEDAIT-----NYKKAIEVLSQIVKNYPDSPTRLIYEQMINEY   59 (75)
T ss_pred             HHHHHHHHHHHHHHhc--CC--HHHHHH-----HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence            3466666667666632  00  001111     14556666666677788888766666655433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.39  E-value=1  Score=26.17  Aligned_cols=25  Identities=24%  Similarity=0.226  Sum_probs=20.3

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHh
Q 025537          219 YLQAACLFSLGMENDARETLKDGTN  243 (251)
Q Consensus       219 ~~~g~~~~~~~~~~~A~~~~~~al~  243 (251)
                      +.+|.+|..+|+++.|...+++.++
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5678888888888888888888774

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=88.26  E-value=0.15  Score=42.72  Aligned_cols=28  Identities=21%  Similarity=0.103  Sum_probs=23.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      +..+..+|++.+|..||++..+.+.|..
T Consensus       246 ~~~li~~~l~~~P~~R~~~~~~~~ll~~  273 (305)
T cd05609         246 AQDLISRLLRQNPLERLGTGGAFEVKQH  273 (305)
T ss_pred             HHHHHHHHhccChhhccCccCHHHHHhC
Confidence            4567779999999999998877777754

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=88.03  E-value=0.44  Score=41.37  Aligned_cols=30  Identities=20%  Similarity=0.345  Sum_probs=26.1

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+..+..+|++.+|..||++.++++.|+.+
T Consensus       343 ~l~~li~~cl~~dp~~RPs~~~l~~~l~~~  372 (374)
T cd05106         343 EIYSIMKMCWNLEPTERPTFSQISQLIQRQ  372 (374)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            355677799999999999999999999865

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=87.84  E-value=0.41  Score=39.42  Aligned_cols=27  Identities=37%  Similarity=0.682  Sum_probs=24.1

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISL   70 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L   70 (251)
                      .+..+...|++.+|.+||++.++++.|
T Consensus       247 ~~~~li~~cl~~~p~~Rps~~~il~~L  273 (274)
T cd05076         247 ELATLISQCLTYEPTQRPSFRTILRDL  273 (274)
T ss_pred             HHHHHHHHHcccChhhCcCHHHHHHhh
Confidence            466788899999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=87.78  E-value=0.51  Score=38.75  Aligned_cols=28  Identities=21%  Similarity=0.515  Sum_probs=24.7

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      .+..+..+|++.+|+.||++.+|++.|.
T Consensus       249 ~~~~~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         249 PVYRIMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             HHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence            4567888999999999999999998874

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=87.54  E-value=1  Score=38.17  Aligned_cols=64  Identities=20%  Similarity=0.370  Sum_probs=36.6

Q ss_pred             CEEEeecCCC-CCc--hhhhHHHHcCCccccccccccCCCCHHHHHHHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537            1 MLLDLLSGKH-IPP--SHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL   70 (251)
Q Consensus         1 vlLEl~tgr~-~~~--~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~va~~C~~~~p~~RP~m~~v~~~L   70 (251)
                      +++||+||++ +..  ......+..+.- . .-|.+....+ .++..++   ..|.+.+|..||++.+.+..-
T Consensus       211 tVvEM~Tg~~PW~~~~~~~~~~~~ig~~-~-~~P~ip~~ls-~~a~~Fl---~~C~~~~p~~Rpta~eLL~hp  277 (313)
T KOG0198|consen  211 TVVEMLTGKPPWSEFFEEAEALLLIGRE-D-SLPEIPDSLS-DEAKDFL---RKCFKRDPEKRPTAEELLEHP  277 (313)
T ss_pred             EEEeccCCCCcchhhcchHHHHHHHhcc-C-CCCCCCcccC-HHHHHHH---HHHhhcCcccCcCHHHHhhCh
Confidence            5899999988 432  112222222211 1 1233332222 3344444   489999999999999987763

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=87.45  E-value=0.58  Score=39.15  Aligned_cols=29  Identities=21%  Similarity=0.430  Sum_probs=25.8

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      .+..+..+|++.+|+.||++.+++..|..
T Consensus       272 ~~~~li~~cl~~~p~~Rpt~~ell~~l~~  300 (302)
T cd05055         272 EIYDIMKTCWDADPLKRPTFKQIVQLIGK  300 (302)
T ss_pred             HHHHHHHHHcCCCchhCcCHHHHHHHHHh
Confidence            46678889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.44  E-value=1.4  Score=28.85  Aligned_cols=31  Identities=13%  Similarity=0.198  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      .+..+..+|...=..|+|++|+.+|.+|++.
T Consensus         5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   35 (75)
T cd02678           5 KAIELVKKAIEEDNAGNYEEALRLYQHALEY   35 (75)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4666677777777888888888888887754

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=87.43  E-value=12  Score=36.13  Aligned_cols=61  Identities=15%  Similarity=-0.028  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHH----------HhhCCC----------ChHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 025537          182 TVYARRCLSYLMNDMPQEALGDAMQA----------QVVSPD----------WPTALYLQAACLFSLGMENDARETLKDG  241 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~~~~a----------l~~~p~----------~~~~~~~~g~~~~~~~~~~~A~~~~~~a  241 (251)
                      ..|++.|.-+-..++-+.|+++|+++          +.-+|.          ++..|-..|.-+...|+.+.|+..|..|
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            46777787777888889999999885          333443          3455666788888899999999998876


Q ss_pred             H
Q 025537          242 T  242 (251)
Q Consensus       242 l  242 (251)
                      -
T Consensus       939 ~  939 (1416)
T KOG3617|consen  939 K  939 (1416)
T ss_pred             h
Confidence            4

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=87.40  E-value=6.5  Score=38.52  Aligned_cols=86  Identities=19%  Similarity=0.249  Sum_probs=61.2

Q ss_pred             cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH-------HHHHHHHHhCCCHH
Q 025537          160 KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL-------YLQAACLFSLGMEN  232 (251)
Q Consensus       160 ~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-------~~~g~~~~~~~~~~  232 (251)
                      ..|.+|+.-|++. .-.|. .+-=|...|.+|..+|+|++-+..+.-|++-.|++|..-       |++-.+.+.  +-.
T Consensus       533 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  608 (932)
T PRK13184        533 RDFTQALSEFSYL-HGGVG-APLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRR  608 (932)
T ss_pred             HHHHHHHHHHHHh-cCCCC-CchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHH
Confidence            3567777777763 33344 566788999999999999999999999999999998654       444444333  334


Q ss_pred             HHHHHHHHHHhhhhhcc
Q 025537          233 DARETLKDGTNLEAKKN  249 (251)
Q Consensus       233 ~A~~~~~~al~l~P~~~  249 (251)
                      .|...---++.+-|++.
T Consensus       609 ~~~~~~~~~~~~~~~~~  625 (932)
T PRK13184        609 EALVFMLLALWIAPEKI  625 (932)
T ss_pred             HHHHHHHHHHHhCcccc
Confidence            56666666777777643

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=87.37  E-value=6.3  Score=36.07  Aligned_cols=85  Identities=16%  Similarity=0.008  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHccCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHH-
Q 025537          164 TAIDCYTQFIDGGTMVSPTVYAR--RCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD-  240 (251)
Q Consensus       164 ~A~~~~~~al~~~p~~~~~~~~~--~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~-  240 (251)
                      -|+..+...+..+|. ++.+...  ++..+..+++...++-....++..+|.++.++.++|.+....|..-.+...+.. 
T Consensus        49 ~~~~a~~~~~~~~~~-~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~  127 (620)
T COG3914          49 LAIYALLLGIAINDV-NPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI  127 (620)
T ss_pred             HHHHHHHccCccCCC-CHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            367777777778876 7765322  688888899999999999999999999999999999999888888777777766 


Q ss_pred             HHhhhhhcc
Q 025537          241 GTNLEAKKN  249 (251)
Q Consensus       241 al~l~P~~~  249 (251)
                      +.+..|++.
T Consensus       128 a~~~~~~~~  136 (620)
T COG3914         128 AEWLSPDNA  136 (620)
T ss_pred             HHhcCcchH
Confidence            788877764

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=87.34  E-value=8.5  Score=34.59  Aligned_cols=51  Identities=12%  Similarity=0.100  Sum_probs=36.5

Q ss_pred             HHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537          156 AFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQA  207 (251)
Q Consensus       156 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  207 (251)
                      ....|+.-.|-.-...+++-.|. .+..-..++.++..+|+|+.|..+..-+
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~-~p~~i~l~~~i~~~lg~ye~~~~~~s~~  349 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQ-DPVLIQLRSVIFSHLGYYEQAYQDISDV  349 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCC-CchhhHHHHHHHHHhhhHHHHHHHhhch
Confidence            44567777777777777777776 7777777777777888888777666544

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=87.18  E-value=0.14  Score=41.54  Aligned_cols=25  Identities=32%  Similarity=0.578  Sum_probs=20.9

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+...|+..+|..||++.+++..
T Consensus       233 ~~~li~~~l~~~p~~Rpt~~~ll~~  257 (265)
T cd06605         233 FQDFVNLCLIKDPRERPSYKELLEH  257 (265)
T ss_pred             HHHHHHHHcCCCchhCcCHHHHhhC
Confidence            5566679999999999999998743

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=87.15  E-value=0.59  Score=37.90  Aligned_cols=29  Identities=28%  Similarity=0.402  Sum_probs=25.3

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      .+..+..+|+..+|..||++.++...|+.
T Consensus       231 ~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         231 SLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             HHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            46678889999999999999999988863

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=87.12  E-value=0.48  Score=38.46  Aligned_cols=27  Identities=26%  Similarity=0.523  Sum_probs=23.8

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISL   70 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L   70 (251)
                      .+..+..+|++.+|..||++.+++..|
T Consensus       229 ~~~~li~~cl~~~p~~Rp~~~~ll~~~  255 (256)
T cd05113         229 KVYAIMYSCWHEKAEERPTFQQLLSSI  255 (256)
T ss_pred             HHHHHHHHHcCCCcccCCCHHHHHHhh
Confidence            466778899999999999999999876

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.07  E-value=1.2  Score=29.17  Aligned_cols=34  Identities=24%  Similarity=0.120  Sum_probs=26.4

Q ss_pred             CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537          161 DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV  210 (251)
Q Consensus       161 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  210 (251)
                      +.++|+.+.++|++.|.                .|+|++|+..|..|++.
T Consensus         2 ~l~kai~Lv~~A~~eD~----------------~gny~eA~~lY~~ale~   35 (75)
T cd02680           2 DLERAHFLVTQAFDEDE----------------KGNAEEAIELYTEAVEL   35 (75)
T ss_pred             CHHHHHHHHHHHHHhhH----------------hhhHHHHHHHHHHHHHH
Confidence            45788888888887772                57788888888888774

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=87.02  E-value=0.57  Score=39.41  Aligned_cols=33  Identities=18%  Similarity=0.528  Sum_probs=28.4

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+...|++.+|..||++.+++..|..+.+.
T Consensus       239 ~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~  271 (316)
T cd05108         239 DVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  271 (316)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHHHHHHHHcC
Confidence            466788899999999999999999999876544

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=86.99  E-value=3.5  Score=29.20  Aligned_cols=62  Identities=13%  Similarity=0.065  Sum_probs=49.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHhCCC-----------HHHHHHHHHHHHhhhhhc
Q 025537          187 RCLSYLMNDMPQEALGDAMQAQVVSPDWP---TALYLQAACLFSLGM-----------ENDARETLKDGTNLEAKK  248 (251)
Q Consensus       187 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g~~~~~~~~-----------~~~A~~~~~~al~l~P~~  248 (251)
                      +|..++..|++-+|++..+..+...++..   -.+..-|.+++.+..           .-.|+++|.++..+.|..
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~   77 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS   77 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence            56778899999999999999999888765   455666888765542           467888999999888863

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=86.97  E-value=0.6  Score=38.82  Aligned_cols=33  Identities=21%  Similarity=0.439  Sum_probs=27.8

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+..+|++.+|..||++.++++.|..+...
T Consensus       246 ~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~  278 (297)
T cd05089         246 EVYELMRQCWRDRPYERPPFAQISVQLSRMLEA  278 (297)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            356788899999999999999999999866543

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=86.95  E-value=0.28  Score=39.94  Aligned_cols=24  Identities=17%  Similarity=0.401  Sum_probs=20.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..||++.++++
T Consensus       240 ~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         240 AIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             HHHHHHHHccCCchhCcCHHHHhh
Confidence            445666999999999999998875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=86.91  E-value=0.66  Score=37.74  Aligned_cols=28  Identities=21%  Similarity=0.445  Sum_probs=24.6

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      .+..+..+|+..+|..||++.++.+.|.
T Consensus       241 ~~~~li~~~l~~~p~~Rp~~~~i~~~l~  268 (269)
T cd05044         241 KIYQLMTNCWAQDPSERPTFDRIQEILQ  268 (269)
T ss_pred             HHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence            3567788999999999999999999885

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=86.90  E-value=0.61  Score=38.19  Aligned_cols=28  Identities=21%  Similarity=0.370  Sum_probs=24.7

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      .+..+...|++.+|..||++.+|++.|.
T Consensus       252 ~~~~li~~~l~~~p~~Rp~~~eil~~l~  279 (280)
T cd05049         252 EVYDIMLGCWKRDPQQRINIKDIHERLQ  279 (280)
T ss_pred             HHHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence            4567788999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=86.78  E-value=0.49  Score=38.56  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=18.2

Q ss_pred             HHhcccCcCCCCCCCHHHHHHHHH
Q 025537           48 LASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        48 va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      +-..|. .+|+.||++.+|.+.|.
T Consensus       246 ~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         246 VMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             HHHHHh-cCcccccCHHHHHHHhc
Confidence            344666 49999999999998873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=86.75  E-value=1.8  Score=22.26  Aligned_cols=25  Identities=16%  Similarity=0.236  Sum_probs=12.9

Q ss_pred             CHHHHHHHHHHHHccCCCCCHHHHHH
Q 025537          161 DFSTAIDCYTQFIDGGTMVSPTVYAR  186 (251)
Q Consensus       161 ~~~~A~~~~~~al~~~p~~~~~~~~~  186 (251)
                      +++.|...|++++...|. +..+|..
T Consensus         2 ~~~~~r~i~e~~l~~~~~-~~~~W~~   26 (33)
T smart00386        2 DIERARKIYERALEKFPK-SVELWLK   26 (33)
T ss_pred             cHHHHHHHHHHHHHHCCC-ChHHHHH
Confidence            345555555555555554 5555443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=86.73  E-value=0.59  Score=38.64  Aligned_cols=31  Identities=23%  Similarity=0.268  Sum_probs=26.6

Q ss_pred             HHHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           43 TELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      ..+..+..+|++.+|+.||+|.++++.|...
T Consensus       248 ~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~  278 (288)
T cd05061         248 ERVTDLMRMCWQFNPKMRPTFLEIVNLLKDD  278 (288)
T ss_pred             HHHHHHHHHHcCCChhHCcCHHHHHHHHHhh
Confidence            3466788899999999999999999998754

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=86.70  E-value=3.2  Score=37.14  Aligned_cols=98  Identities=12%  Similarity=-0.088  Sum_probs=71.1

Q ss_pred             HHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC
Q 025537          151 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM  230 (251)
Q Consensus       151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~  230 (251)
                      ..+...-..|+|+.|.....-+=..-.. ...+..-+-.....+|++++|.....-.+.-.-..++..--.+..-..+|-
T Consensus       328 l~~~i~~~lg~ye~~~~~~s~~~~~~~s-~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~  406 (831)
T PRK15180        328 LRSVIFSHLGYYEQAYQDISDVEKIIGT-TDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQL  406 (831)
T ss_pred             HHHHHHHHhhhHHHHHHHhhchhhhhcC-CchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhH
Confidence            4455556678899988877654333222 222233344456789999999999888887666677776666777889999


Q ss_pred             HHHHHHHHHHHHhhhhhcc
Q 025537          231 ENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       231 ~~~A~~~~~~al~l~P~~~  249 (251)
                      +++|...+++.+.++|..+
T Consensus       407 ~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        407 FDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             HHHHHHHHHHHhccCChhc
Confidence            9999999999999999754

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=86.68  E-value=0.6  Score=37.83  Aligned_cols=29  Identities=31%  Similarity=0.430  Sum_probs=25.5

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      .+..+..+|+..+|+.||++.++...|+.
T Consensus       231 ~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         231 ELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             HHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence            46677889999999999999999999864

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=86.66  E-value=0.55  Score=41.31  Aligned_cols=31  Identities=29%  Similarity=0.403  Sum_probs=27.3

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQ   74 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~   74 (251)
                      .+..+..+|++.+|+.||++.++++.|..+.
T Consensus       368 ~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~  398 (400)
T cd05105         368 EVYDIMVKCWNSEPEKRPSFLHLSDIVESLL  398 (400)
T ss_pred             HHHHHHHHHCccCHhHCcCHHHHHHHHHHHc
Confidence            4667888999999999999999999998653

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=86.65  E-value=0.26  Score=40.18  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=17.5

Q ss_pred             HHHhcccCcCCCCCCCHHHHHH
Q 025537           47 RLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        47 ~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+.|+..+|..||+|.+++.
T Consensus       239 ~~li~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         239 RDFLGCIFVEARHRPSAEELLR  260 (266)
T ss_pred             HHHHHHhcCChhhCcCHHHHhc
Confidence            3334688889999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.55  E-value=13  Score=28.80  Aligned_cols=98  Identities=10%  Similarity=0.049  Sum_probs=73.9

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhhCCCChHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM--V-SPTVYARRCLSYLMNDMPQEALGDAMQA-QVVSPDWPTALYLQ  221 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~  221 (251)
                      .......|.....+|+-..|+..|+.+-.-.|-  . ...+...-+..++..|.|+......+.. ..-+|-...+.--+
T Consensus        94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL  173 (221)
T COG4649          94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL  173 (221)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence            345567788889999999999999996654432  1 1234555677888899999877766652 34566667777788


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHh
Q 025537          222 AACLFSLGMENDARETLKDGTN  243 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~  243 (251)
                      |.+-++.|+|..|...|.+...
T Consensus       174 glAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         174 GLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             hHHHHhccchHHHHHHHHHHHc
Confidence            9999999999999999998754

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=86.53  E-value=0.72  Score=37.40  Aligned_cols=29  Identities=24%  Similarity=0.363  Sum_probs=24.7

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      .+..+..+|+..+|..||++.++.+.|+.
T Consensus       231 ~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         231 SLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             HHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence            35566779999999999999999998864

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=86.41  E-value=0.57  Score=37.67  Aligned_cols=28  Identities=25%  Similarity=0.465  Sum_probs=24.9

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      .+..+..+|++.+|..||++.++++.|.
T Consensus       223 ~~~~li~~~l~~~p~~Rp~~~ell~~l~  250 (251)
T cd05041         223 EIYRLMLQCWAYDPENRPSFSEIYNELQ  250 (251)
T ss_pred             HHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence            4667888999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=86.33  E-value=0.71  Score=37.44  Aligned_cols=29  Identities=28%  Similarity=0.460  Sum_probs=25.3

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      .+..+..+|++.+|+.||++.++...|..
T Consensus       231 ~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         231 ELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             HHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            46677789999999999999999999864

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=86.33  E-value=0.66  Score=38.76  Aligned_cols=33  Identities=27%  Similarity=0.532  Sum_probs=27.8

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+..+|++.+|+.||++.+++..|..+...
T Consensus       251 ~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~  283 (303)
T cd05088         251 EVYDLMRQCWREKPYERPSFAQILVSLNRMLEE  283 (303)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            356788899999999999999999999865433

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=86.30  E-value=0.84  Score=37.15  Aligned_cols=30  Identities=30%  Similarity=0.426  Sum_probs=26.5

Q ss_pred             HHHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           43 TELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      ..+.++..+|++.+|..||++.++.+.|+.
T Consensus       230 ~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~  259 (262)
T cd05071         230 ESLHDLMCQCWRKEPEERPTFEYLQAFLED  259 (262)
T ss_pred             HHHHHHHHHHccCCcccCCCHHHHHHHHHH
Confidence            346788899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=86.22  E-value=0.7  Score=37.30  Aligned_cols=28  Identities=18%  Similarity=0.337  Sum_probs=24.7

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      .+..+..+|++.+|.+||++.++++.|.
T Consensus       229 ~~~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         229 DIYNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             HHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence            4667888999999999999999999874

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=86.20  E-value=0.61  Score=38.12  Aligned_cols=28  Identities=32%  Similarity=0.478  Sum_probs=25.1

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      .+..+...|++.+|++||++.+++..|+
T Consensus       249 ~~~~li~~~l~~~p~~Rpt~~~l~~~l~  276 (277)
T cd05032         249 KLLELMRMCWQYNPKMRPTFLEIVSSLK  276 (277)
T ss_pred             HHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence            4667888999999999999999999875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=86.19  E-value=0.62  Score=40.99  Aligned_cols=30  Identities=23%  Similarity=0.428  Sum_probs=26.2

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+..+...|+..+|..||++.++++.|+.+
T Consensus       370 ~l~~li~~cl~~~P~~RPs~~ell~~L~~~  399 (401)
T cd05107         370 EIYEIMQKCWEEKFEIRPDFSQLVHLVGDL  399 (401)
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence            456677799999999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=86.07  E-value=3.1  Score=32.50  Aligned_cols=49  Identities=22%  Similarity=0.327  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 025537          162 FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP  212 (251)
Q Consensus       162 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  212 (251)
                      .+..++...+.++..|  ++.++.+++.++..+|+.++|.....++..+.|
T Consensus       127 l~~~~~~a~~~l~~~P--~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRP--DPNVYQRYALALALLGDPEEARQWLARARRLYP  175 (193)
T ss_pred             HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3445555666666666  477777778888888888888777777777777

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=86.07  E-value=0.78  Score=37.41  Aligned_cols=32  Identities=22%  Similarity=0.427  Sum_probs=27.2

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      .+..+..+|+..+|..||++.+++..|..+..
T Consensus       236 ~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~  267 (270)
T cd05056         236 TLYSLMTKCWAYDPSKRPRFTELKAQLSDILQ  267 (270)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            45567779999999999999999999987643

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=86.05  E-value=0.76  Score=39.01  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=28.5

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+...|++.+|..||+|.+++..|..+...
T Consensus       264 ~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~  296 (334)
T cd05100         264 ELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTV  296 (334)
T ss_pred             HHHHHHHHHcccChhhCcCHHHHHHHHHHHhhh
Confidence            466778899999999999999999999877543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=85.95  E-value=0.32  Score=40.53  Aligned_cols=25  Identities=28%  Similarity=0.521  Sum_probs=21.4

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+..+|+..+|..||++.+++..
T Consensus       246 l~~li~~~l~~~p~~Rpt~~eil~~  270 (296)
T cd06654         246 FRDFLNRCLDMDVEKRGSAKELLQH  270 (296)
T ss_pred             HHHHHHHHCcCCcccCcCHHHHhhC
Confidence            4567779999999999999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=85.95  E-value=0.77  Score=38.35  Aligned_cols=33  Identities=18%  Similarity=0.441  Sum_probs=28.2

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+...|+..+|..||+|.++++.|..+...
T Consensus       239 ~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~  271 (303)
T cd05110         239 DVYMVMVKCWMIDADSRPKFKELAAEFSRMARD  271 (303)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            466778899999999999999999999876544

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=85.66  E-value=2.6  Score=21.63  Aligned_cols=29  Identities=14%  Similarity=-0.190  Sum_probs=24.8

Q ss_pred             CCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          195 DMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       195 ~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      |+++.|...|++++...|.++..|...+.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            56788999999999999999998887664

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.63  E-value=3.3  Score=34.62  Aligned_cols=58  Identities=12%  Similarity=-0.085  Sum_probs=50.2

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQ  206 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  206 (251)
                      .+...+..+...|.|.+|+++-++++.++|= +...+..+-..+..+|+--.|+..|++
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHH
Confidence            4456677788999999999999999999996 888999999999999998888777665

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=85.40  E-value=0.69  Score=37.35  Aligned_cols=28  Identities=25%  Similarity=0.487  Sum_probs=24.5

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      .+..+..+|++.+|..||++.+++..|.
T Consensus       225 ~~~~li~~~l~~~p~~Rp~~~~l~~~l~  252 (254)
T cd05083         225 DVYVLMTSCWETEPKKRPSFHKLREKLE  252 (254)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHc
Confidence            3557778999999999999999999875

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>PHA02882 putative serine/threonine kinase; Provisional

Probab=85.30  E-value=0.35  Score=40.28  Aligned_cols=26  Identities=12%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISL   70 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L   70 (251)
                      +.++...|.+.+|++||++.++.+.|
T Consensus       268 ~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        268 IYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence            44566689999999999999998875

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=85.27  E-value=2.1  Score=42.44  Aligned_cols=100  Identities=20%  Similarity=0.125  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHH------HHHHH-HccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAID------CYTQF-IDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS-----  211 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----  211 (251)
                      ..+....+.|......+.|.+|.+      ++++. -.+.|. .+..|..++..+.++|++++|+....+|.-+.     
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~-~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPE-VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchh-HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc
Confidence            467888999999999999998888      55532 234666 88899999999999999999999999986653     


Q ss_pred             ---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537          212 ---PDWPTALYLQAACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       212 ---p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l  244 (251)
                         |+....|-+++...+..++...|+..+.+++++
T Consensus      1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred             CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence               455678888898899999999999988888765

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.16  E-value=2.1  Score=28.02  Aligned_cols=31  Identities=10%  Similarity=0.065  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      .|..+..+|...=..|+|++|+.+|.++|+.
T Consensus         5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~   35 (75)
T cd02684           5 KAIALVVQAVKKDQRGDAAAALSLYCSALQY   35 (75)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4566667777777888888888888887754

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=85.06  E-value=3.6  Score=33.60  Aligned_cols=60  Identities=13%  Similarity=0.042  Sum_probs=35.4

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQA  207 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  207 (251)
                      ...+.|..++..|+|++|+.+|+.+...--.     ....+...+..|+..+|+.+..+..+-+.
T Consensus       180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3446677777777777777777776433110     12345555666677777766666655443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=85.06  E-value=0.65  Score=37.86  Aligned_cols=27  Identities=22%  Similarity=0.580  Sum_probs=23.4

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISL   70 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L   70 (251)
                      .+..+..+|++.+|.+||++.+++..+
T Consensus       235 ~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         235 ELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence            456678899999999999999998865

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=84.99  E-value=17  Score=38.89  Aligned_cols=105  Identities=13%  Similarity=0.008  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CC---------
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS-PD---------  213 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~---------  213 (251)
                      .-++.|.+.+...-+.|+++.|-.+.-+|.+..   -+.++.-+|....+.|+-..|+...++.+..+ |+         
T Consensus      1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence            346788888999999999999999999988877   45888899999999999999999999998653 22         


Q ss_pred             -C------hHHHHHHHHHHHhCCCH--HHHHHHHHHHHhhhhhccCC
Q 025537          214 -W------PTALYLQAACLFSLGME--NDARETLKDGTNLEAKKNKN  251 (251)
Q Consensus       214 -~------~~~~~~~g~~~~~~~~~--~~A~~~~~~al~l~P~~~~~  251 (251)
                       .      .++.+..+.-....|++  ++-++.|..+.++.|+++++
T Consensus      1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~ 1791 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDK 1791 (2382)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCc
Confidence             1      12333333333444443  55678899999999987754

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.80  E-value=12  Score=33.59  Aligned_cols=95  Identities=15%  Similarity=-0.097  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHhHHH-hhcCHHHHHHHHHHHHccC---CC---CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCh
Q 025537          144 QETLNSKKHGDTAF-RAKDFSTAIDCYTQFIDGG---TM---VSPTVYARRCLSYLMND-MPQEALGDAMQAQVVSPDWP  215 (251)
Q Consensus       144 ~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~---p~---~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~  215 (251)
                      -+|....+.|..++ ..++++.|...+++|..+.   |.   .-..++..++.+|.+.. .+..|.....+||++..++|
T Consensus        44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p  123 (629)
T KOG2300|consen   44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP  123 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence            45778888888774 5889999999999998664   22   12345677899998887 78999999999999987765


Q ss_pred             ----HHHHHHHHHHHhCCCHHHHHHHH
Q 025537          216 ----TALYLQAACLFSLGMENDARETL  238 (251)
Q Consensus       216 ----~~~~~~g~~~~~~~~~~~A~~~~  238 (251)
                          +..+.++..+.-..+|.-|++.+
T Consensus       124 ~wsckllfQLaql~~idkD~~sA~elL  150 (629)
T KOG2300|consen  124 YWSCKLLFQLAQLHIIDKDFPSALELL  150 (629)
T ss_pred             hhhHHHHHHHHHHHhhhccchhHHHHH
Confidence                56678888888888998888764

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=84.80  E-value=7.6  Score=34.03  Aligned_cols=103  Identities=9%  Similarity=-0.065  Sum_probs=71.8

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHH-----ccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCChH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFI-----DGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV----VSPDWPT  216 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al-----~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~  216 (251)
                      +..++-....+-..++...--..+..-+     ..+...-+.+.+-+-.+|+..+.|+.|-....++.-    -+..++.
T Consensus       169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR  248 (493)
T KOG2581|consen  169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR  248 (493)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence            4555555555555666544444443333     333322345556677888888999999888888652    1224577


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          217 ALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       217 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ..|.+|.+..-.++|..|.++|-+|++..|+.
T Consensus       249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            78899999999999999999999999999973

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=84.73  E-value=0.95  Score=37.13  Aligned_cols=33  Identities=15%  Similarity=0.406  Sum_probs=27.7

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+...|+..+|..||++.+++..|..+...
T Consensus       239 ~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05109         239 DVYMIMVKCWMIDSECRPRFRELVDEFSRMARD  271 (279)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcC
Confidence            456677899999999999999999998776443

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=84.69  E-value=0.92  Score=37.30  Aligned_cols=29  Identities=28%  Similarity=0.449  Sum_probs=24.6

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      .+..+..+|++.+|..||++.++.+.|..
T Consensus       254 ~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         254 RMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             HHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence            35567779999999999999999998753

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=84.45  E-value=14  Score=30.17  Aligned_cols=61  Identities=18%  Similarity=0.101  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CC----hHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 025537          181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSP--DW----PTALYLQAACLFSLGMENDARETLKDG  241 (251)
Q Consensus       181 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~~g~~~~~~~~~~~A~~~~~~a  241 (251)
                      ..+-..+|.-|+..|+|++|+..++.+.....  .+    ......+..|+..+|+.++.+...-+.
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            34556789999999999999999999976533  22    456677888999999999887765444

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=84.38  E-value=9.2  Score=35.73  Aligned_cols=95  Identities=12%  Similarity=-0.001  Sum_probs=67.3

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccC-------C---CCC---------------HHHHHHHHHHHHhcCCHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG-------T---MVS---------------PTVYARRCLSYLMNDMPQEA  200 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p---~~~---------------~~~~~~~a~~~~~~~~~~~A  200 (251)
                      +-.+.--|......+..++|..++.++++.-       |   ...               ..+.+..+.+..-.++|..|
T Consensus       301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a  380 (608)
T PF10345_consen  301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA  380 (608)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            5556666777777777767777776666431       1   100               11345566777779999999


Q ss_pred             HHHHHHHHhhC---C------CChHHHHHHHHHHHhCCCHHHHHHHHHH
Q 025537          201 LGDAMQAQVVS---P------DWPTALYLQAACLFSLGMENDARETLKD  240 (251)
Q Consensus       201 ~~~~~~al~~~---p------~~~~~~~~~g~~~~~~~~~~~A~~~~~~  240 (251)
                      ......+....   |      ..+..+|-.|..+...|+.+.|+..|.+
T Consensus       381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~  429 (608)
T PF10345_consen  381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQK  429 (608)
T ss_pred             HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence            88888776653   2      2478899999999999999999999983

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=84.26  E-value=0.91  Score=36.44  Aligned_cols=27  Identities=37%  Similarity=0.553  Sum_probs=23.7

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISL   70 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L   70 (251)
                      .+..+..+|++.+|.+||++.+++..|
T Consensus       235 ~~~~li~~~l~~~p~~Rps~~~l~~~l  261 (262)
T cd00192         235 ELYELMLSCWQLDPEDRPTFSELVERL  261 (262)
T ss_pred             HHHHHHHHHccCCcccCcCHHHHHHhh
Confidence            466777799999999999999999876

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=84.22  E-value=0.99  Score=36.48  Aligned_cols=29  Identities=31%  Similarity=0.437  Sum_probs=25.3

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      .+..+..+|++.+|..||++.++.+.|+.
T Consensus       232 ~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         232 ELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             HHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence            46677889999999999999999998864

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=84.22  E-value=0.95  Score=36.73  Aligned_cols=30  Identities=20%  Similarity=0.319  Sum_probs=25.8

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+.++...|++.+|++||++.+|.+.|+.+
T Consensus       226 ~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         226 EMYALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence            455677899999999999999999998754

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=84.22  E-value=2.7  Score=27.38  Aligned_cols=31  Identities=19%  Similarity=0.210  Sum_probs=21.5

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      .|..+..+|..+=..|++++|+.+|.++++.
T Consensus         7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~   37 (77)
T smart00745        7 KAKELISKALKADEAGDYEEALELYKKAIEY   37 (77)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3555666666676778888888887777643

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=84.22  E-value=2.3  Score=24.70  Aligned_cols=25  Identities=8%  Similarity=-0.157  Sum_probs=23.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh
Q 025537          185 ARRCLSYLMNDMPQEALGDAMQAQV  209 (251)
Q Consensus       185 ~~~a~~~~~~~~~~~A~~~~~~al~  209 (251)
                      +++|.+|+.+|+++.|....+..+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5789999999999999999999995

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=84.13  E-value=0.84  Score=37.53  Aligned_cols=27  Identities=22%  Similarity=0.330  Sum_probs=24.0

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      +..+..+|++.+|.+||++.++.+.|+
T Consensus       253 ~~~li~~cl~~~P~~Rp~~~~l~~~l~  279 (280)
T cd05092         253 VYAIMQGCWQREPQQRMVIKDIHSRLQ  279 (280)
T ss_pred             HHHHHHHHccCChhhCCCHHHHHHHHh
Confidence            556778999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.11  E-value=2.3  Score=28.18  Aligned_cols=17  Identities=6%  Similarity=0.149  Sum_probs=10.1

Q ss_pred             cCHHHHHHHHHHHHccC
Q 025537          160 KDFSTAIDCYTQFIDGG  176 (251)
Q Consensus       160 ~~~~~A~~~~~~al~~~  176 (251)
                      +-|++|..+.++||..+
T Consensus         3 ~~~~~A~~~I~kaL~~d   19 (79)
T cd02679           3 GYYKQAFEEISKALRAD   19 (79)
T ss_pred             hHHHHHHHHHHHHhhhh
Confidence            34566666666666655

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=84.00  E-value=0.82  Score=36.84  Aligned_cols=28  Identities=25%  Similarity=0.578  Sum_probs=24.8

Q ss_pred             HHHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537           43 TELVRLASRCLQSEARERPNAKSLVISL   70 (251)
Q Consensus        43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L   70 (251)
                      ..+..+...|+..+|.+||++.++++.|
T Consensus       231 ~~~~~li~~~l~~~p~~Rpt~~~il~~l  258 (259)
T cd05037         231 AELANLINQCWTYDPTKRPSFRAILRDL  258 (259)
T ss_pred             hHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence            4567788899999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=83.63  E-value=5.5  Score=28.81  Aligned_cols=69  Identities=17%  Similarity=0.096  Sum_probs=52.8

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH----Hh
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--------------SPTVYARRCLSYLMNDMPQEALGDAMQA----QV  209 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a----l~  209 (251)
                      .+...|+..++.+++-.++-+|++|+.+..+.              ....-.|+|..+..+|+.+-.+.+.+-|    +.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999998653210              1123578999999999999999988765    55


Q ss_pred             hCCCChH
Q 025537          210 VSPDWPT  216 (251)
Q Consensus       210 ~~p~~~~  216 (251)
                      +-|+.+.
T Consensus        83 LiPQCp~   89 (140)
T PF10952_consen   83 LIPQCPN   89 (140)
T ss_pred             hccCCCC
Confidence            6776543

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.59  E-value=2.7  Score=27.32  Aligned_cols=30  Identities=13%  Similarity=0.184  Sum_probs=21.5

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      +..+..+|...=..|+|++|+.+|..|++.
T Consensus         6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~   35 (75)
T cd02656           6 AKELIKQAVKEDEDGNYEEALELYKEALDY   35 (75)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            455566666777778888888888877754

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=83.19  E-value=9.6  Score=34.70  Aligned_cols=92  Identities=9%  Similarity=-0.103  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH-
Q 025537          140 TSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL-  218 (251)
Q Consensus       140 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-  218 (251)
                      ..+|.+...|...-..+-.+ -++++.+.|++.+...|. .+.+|..-....+..++|+.....|.++|...=+ .+.| 
T Consensus        14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~-s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~   90 (656)
T KOG1914|consen   14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPS-SPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWK   90 (656)
T ss_pred             hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHH
Confidence            34566677777777766555 888888888888888887 8888888888888888888888888888764432 3333 


Q ss_pred             HHHHHHHHhCCCHHHH
Q 025537          219 YLQAACLFSLGMENDA  234 (251)
Q Consensus       219 ~~~g~~~~~~~~~~~A  234 (251)
                      ..+..+....|....+
T Consensus        91 lYl~YVR~~~~~~~~~  106 (656)
T KOG1914|consen   91 LYLSYVRETKGKLFGY  106 (656)
T ss_pred             HHHHHHHHHccCcchH
Confidence            2234444444544443

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.15  E-value=2.7  Score=27.55  Aligned_cols=31  Identities=13%  Similarity=0.126  Sum_probs=21.9

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      .|..+..+|...=..|+|++|+.+|..+|+.
T Consensus         5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~   35 (75)
T cd02677           5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDL   35 (75)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3555666667777778888888888877754

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>PF13041 PPR_2: PPR repeat family

Probab=82.97  E-value=7.2  Score=22.75  Aligned_cols=23  Identities=13%  Similarity=0.199  Sum_probs=12.0

Q ss_pred             HhHHHhhcCHHHHHHHHHHHHcc
Q 025537          153 GDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       153 g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      -..+.+.|++++|.+.|++-.+.
T Consensus        10 i~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen   10 ISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHc
Confidence            33455555555555555555443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=82.46  E-value=11  Score=28.36  Aligned_cols=63  Identities=14%  Similarity=0.102  Sum_probs=51.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          184 YARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       184 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      ......+-...++.+++.......-.+.|+.+.....-|..+...|+|++|+..|+...+-.|
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~   75 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG   75 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence            334444455588888888888888889999999999999999999999999999998765443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.95  E-value=2.2  Score=27.95  Aligned_cols=32  Identities=6%  Similarity=-0.109  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537          163 STAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV  210 (251)
Q Consensus       163 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  210 (251)
                      .+|+..+.+|++.+ .               .|+|++|+..|..+|..
T Consensus         4 ~~A~~l~~~Ave~d-~---------------~~~y~eA~~~Y~~~i~~   35 (75)
T cd02677           4 EQAAELIRLALEKE-E---------------EGDYEAAFEFYRAGVDL   35 (75)
T ss_pred             HHHHHHHHHHHHHH-H---------------HhhHHHHHHHHHHHHHH
Confidence            56777777776666 2               38888888888887763

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=81.81  E-value=34  Score=31.96  Aligned_cols=101  Identities=15%  Similarity=-0.049  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhHHH-hhcCHHHHHHHHHHHHccCCCC-CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----
Q 025537          144 QETLNSKKHGDTAF-RAKDFSTAIDCYTQFIDGGTMV-SP----TVYARRCLSYLMNDMPQEALGDAMQAQVVSPD----  213 (251)
Q Consensus       144 ~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~-~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----  213 (251)
                      .++....+.|..++ ...+++.|..++++++.+.... ..    .+-+-++.++.+.+... |+..++++|+..-+    
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~  135 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS  135 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence            45777888888887 5789999999999998876321 11    23345678887777767 99999999887554    


Q ss_pred             ChHHHHHHHHH-HH-hCCCHHHHHHHHHHHHhhh
Q 025537          214 WPTALYLQAAC-LF-SLGMENDARETLKDGTNLE  245 (251)
Q Consensus       214 ~~~~~~~~g~~-~~-~~~~~~~A~~~~~~al~l~  245 (251)
                      .....|++-.+ +. ..+++..|+..++.+..+.
T Consensus       136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a  169 (608)
T PF10345_consen  136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA  169 (608)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence            22333333322 22 2379999999999887765

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=81.77  E-value=0.54  Score=39.13  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=20.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+...|+..+|..||++.++++.
T Consensus       248 ~~~li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         248 LRGFLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             HHHHHHHHccCChhHCcCHHHHhhC
Confidence            3345567999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=81.57  E-value=1  Score=36.08  Aligned_cols=27  Identities=30%  Similarity=0.560  Sum_probs=23.1

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISL   70 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L   70 (251)
                      .+.++..+|+..+|..||++.++++.|
T Consensus       232 ~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      232 EIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             HHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence            466678899999999999999998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=81.56  E-value=15  Score=34.24  Aligned_cols=97  Identities=14%  Similarity=0.022  Sum_probs=46.5

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC-HHHHHH---HHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS-PTVYAR---RCLSYLMNDMPQEALGDAMQAQVVSPD-WPTALYL  220 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~---~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~  220 (251)
                      ++...+-|..+-...-|++|.+.|++.|.+.+..+ .++|+.   .....+.--..+.|...|++|++..|. +.+..|.
T Consensus       511 Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyL  590 (835)
T KOG2047|consen  511 PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYL  590 (835)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            33444455555555556666666666666654322 233322   222222333456666666666665552 2332222


Q ss_pred             H-HHHHHhCCCHHHHHHHHHHHH
Q 025537          221 Q-AACLFSLGMENDARETLKDGT  242 (251)
Q Consensus       221 ~-g~~~~~~~~~~~A~~~~~~al  242 (251)
                      + +..-..-|--..|+..|++|-
T Consensus       591 lYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  591 LYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHH
Confidence            2 333334455555666665553

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=81.53  E-value=0.65  Score=38.23  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=20.9

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+..+|++.+|..||++.+++..
T Consensus       238 ~~~li~~~l~~~p~~Rp~~~~l~~~  262 (286)
T cd06622         238 AQDFVAKCLNKIPNRRPTYAQLLEH  262 (286)
T ss_pred             HHHHHHHHcccCcccCCCHHHHhcC
Confidence            4556779999999999999988763

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=81.48  E-value=0.87  Score=37.96  Aligned_cols=25  Identities=32%  Similarity=0.410  Sum_probs=21.2

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+...|++.+|..||++.++++.
T Consensus       247 l~~~i~~~l~~~P~~Rps~~~ll~~  271 (297)
T cd06659         247 LRDFLERMLTREPQERATAQELLDH  271 (297)
T ss_pred             HHHHHHHHhcCCcccCcCHHHHhhC
Confidence            4556679999999999999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=81.36  E-value=0.65  Score=42.11  Aligned_cols=25  Identities=20%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+...|++.+|..||++.+++..
T Consensus       273 l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        273 MQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             HHHHHHHHcccChhhCcCHHHHHhC
Confidence            5567779999999999999998754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=80.85  E-value=4.7  Score=36.56  Aligned_cols=69  Identities=12%  Similarity=-0.093  Sum_probs=54.8

Q ss_pred             HHHHHHHHHhHHHhh---cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537          145 ETLNSKKHGDTAFRA---KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW  214 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  214 (251)
                      ...-+-+++.++++.   |+.-.|+..-..|++++|. .-.+|+.++.++..++++.+|+.+...+....|.+
T Consensus       407 ~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s-~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  407 AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS-IQKAHFRLARALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH-HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence            344555666666653   4566788888899999997 88999999999999999999999877777777743

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=80.82  E-value=11  Score=35.76  Aligned_cols=96  Identities=17%  Similarity=0.167  Sum_probs=57.1

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHH------HHccC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------Hh
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQ------FIDGG----TMVSPTVYARRCLSYLMNDMPQEALGDAMQA------QV  209 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~------al~~~----p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------l~  209 (251)
                      .+.|-..|..+-+..+|++|+++|.+      ||++.    |..-..+-...|.-+-+.|+++.|+..|-.|      ++
T Consensus       661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie  740 (1636)
T KOG3616|consen  661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE  740 (1636)
T ss_pred             hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence            44566677777788889999988764      55542    3211122233466666777777777665432      22


Q ss_pred             h---CCCCh---------------HHHH-HHHHHHHhCCCHHHHHHHHHHH
Q 025537          210 V---SPDWP---------------TALY-LQAACLFSLGMENDARETLKDG  241 (251)
Q Consensus       210 ~---~p~~~---------------~~~~-~~g~~~~~~~~~~~A~~~~~~a  241 (251)
                      .   ...|+               ..|| ..+..|...|+|+-|...|.++
T Consensus       741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~  791 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA  791 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence            1   01122               2233 3467788888888888877654

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=80.71  E-value=1.3  Score=35.54  Aligned_cols=26  Identities=31%  Similarity=0.658  Sum_probs=22.2

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      .+..+..+|++.+|++||+|.++++.
T Consensus       228 ~~~~~i~~~l~~~p~~Rp~~~~ll~~  253 (256)
T cd08529         228 QLAQLIDQCLTKDYRQRPDTFQLLRN  253 (256)
T ss_pred             HHHHHHHHHccCCcccCcCHHHHhhC
Confidence            46677789999999999999998764

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		2e-04
1wao_1	477	Pp5 Structure Length = 477		2e-04

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 206
           K   +  F+AKD+  AI  Y+Q I+    ++P+    Y  R L+YL  +    ALGDA +
Sbjct: 17  KTQANDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 207 AQVVSPDWPTALYLQAACLFSLG 229
           A  +   +    Y +AA   +LG
Sbjct: 73  AIELDKKYIKGYYRRAASNMALG 95

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 206
           K   +  F+AKD+  AI  Y+Q I+    ++P+    Y  R L+YL  +    ALGDA +
Sbjct: 10  KTQANDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 207 AQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
           A  +   +    Y +AA   +LG     R  L+D
Sbjct: 66  AIELDKKYIKGYYRRAASNMALG---KFRAALRD 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	5e-16
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	8e-14
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-13
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-13
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-13
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	5e-13
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-12
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-12
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-11
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	7e-11
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-10
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-07
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	7e-07
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	9e-07
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	5e-06
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	5e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-05
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	7e-05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	7e-05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-04

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 71.1 bits (175), Expect = 5e-16
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQE 199
           M++    K+ G+ A    +   A+ CY++ I     + P    +Y+ R  +Y      Q+
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHNHVLYSNRSAAYAKKGDYQK 56

Query: 200 ALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKN 249
           A  D  +   + PDW      +AA L  L    +A+ T +     +  N + K+ 
Sbjct: 57  AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 66.3 bits (162), Expect = 8e-14
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV---YARRCLSYLMNDMPQEALGDAMQ 206
           K  G+ A   K++S AID YTQ +     ++P      + R  +Y  +   ++A  DA  
Sbjct: 15  KSEGNAAMARKEYSKAIDLYTQALS----IAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70

Query: 207 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLE 245
           A VV P +  A        F +     A+E  + G   E
Sbjct: 71  ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 64.9 bits (159), Expect = 1e-13
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 12/108 (11%)

Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 206
           K  G+  F+  D+ TA+  Y + +       P    +Y+ R          Q AL D   
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAVK----RDPENAILYSNRAACLTKLMEFQRALDDCDT 72

Query: 207 AQVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKN 249
              +   +      +AACL ++   + A+   +     D +N EA++ 
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 12/108 (11%)

Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 206
           K   +  F+AKD+  AI  Y+Q I+    ++P+    Y  R L+YL  +    ALGDA +
Sbjct: 17  KTQANDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATR 72

Query: 207 AQVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKN 249
           A  +   +    Y +AA   +LG    A    +        + +AK  
Sbjct: 73  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK 120

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 63.8 bits (156), Expect = 4e-13
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 12/108 (11%)

Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 206
           K  G+  F+  D+  A+  YT+ I      +P    +Y+ R   Y      Q AL D  +
Sbjct: 20  KNKGNECFQKGDYPQAMKHYTEAIK----RNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75

Query: 207 AQVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKN 249
              + P +      +AA L ++     A +  +     D +  EA   
Sbjct: 76  CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 63.5 bits (155), Expect = 5e-13
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV---YARRCLSYLMNDMPQEALGDAMQ 206
           K+ G+  F  + +  A  CY + I      +P V   Y  R L YL    P++AL D  +
Sbjct: 13  KEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRR 68

Query: 207 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN 251
           A  +      A +    C   +   ++A   L+   +L  ++  N
Sbjct: 69  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 113

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 61.8 bits (151), Expect = 2e-12
 Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 206
           K  G+   + ++F  A+  Y + I+    ++P     +  R  +Y        A+ D  +
Sbjct: 16  KTEGNEQMKVENFEAAVHFYGKAIE----LNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71

Query: 207 AQVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKN 249
           A  + P +  A       L SL    +A    K     D  N   K N
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSN 119

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 64.6 bits (157), Expect = 2e-12
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV---YARRCLSYLMNDMPQEALGDAMQ 206
           K+ G+  F  + +  A  CY + I      +P V   Y  R L YL    P++AL D  +
Sbjct: 8   KEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 207 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN 251
           A  +      A +    C   +   ++A   L+   +L  ++  N
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 1/99 (1%)

Query: 141 SQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEA 200
             ++     K   +  F+AKD+  AI  Y+Q I+     +   Y  R L+YL  +    A
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYA 59

Query: 201 LGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK 239
           LGDA +A  +   +    Y +AA   +LG    A    +
Sbjct: 60  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 98

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 57.8 bits (140), Expect = 7e-11
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 7/107 (6%)

Query: 150 KKHGDTAFRAKDFSTAIDCYTQFI--DGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQA 207
           +K G+  F+  D+  A+  YTQ +  D        ++  R   +L  +   +A  +A +A
Sbjct: 32  RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA 91

Query: 208 QVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKN 249
                    ALY ++  L  LG  + A   L+     +  N   ++ 
Sbjct: 92  IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV---YARRCLSYLMNDMPQEALGDAMQ 206
           +  G   F   D+  A+  YT+ I      +P     Y+ R  +        EA+ D  +
Sbjct: 8   RLEGKEYFTKSDWPNAVKAYTEMIK----RAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 207 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249
           A    P++  A   +A    ++     A ETL      +A+ N
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 15/102 (14%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV---YARRCLSYLMNDMPQE 199
           M +    K+ G++ F+   +  A+ CY Q I       P     Y+ + ++ +      +
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQNPVGYSNKAMALIKLGEYTQ 56

Query: 200 ALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDG 241
           A+    Q    +        +++   + L +   A  +++  
Sbjct: 57  AIQMCQQGLRYTSTAEHV-AIRSKLQYRLELAQGAVGSVQIP 97

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEAL 201
           +  E    +     AF + D++ AI    + ++        +   R   ++    P++A+
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAI 197

Query: 202 GDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKN 249
            D   A  +  D   A Y  +   + LG    +   ++     D  +     +
Sbjct: 198 SDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 250

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 153 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP 212
           G     A   + A+  +   +DG    +   Y RR   +L     + AL D  +   +  
Sbjct: 33  GKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91

Query: 213 DWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKNK 250
           D+  A   +   L   G  ++A +  K     + +  E K+ +
Sbjct: 92  DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ 134

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFID---GGTMVSPTVYARRCLSYLMNDMPQ 198
           Q+++     +  +   R   ++ A   Y   +         +     R C  +  ++ P 
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPV 312

Query: 199 EALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK 239
           EA+    +   + PD   AL  +A       M ++A +  +
Sbjct: 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEAL 201
           +  E    +     AF   D++ AI    + ++        +   R   ++    P++A+
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAI 174

Query: 202 GDAMQAQVVSPDWPTALYLQAACLFSLGMENDA----RETLK-DGTNLEAKKN 249
            D   A  +  D   A Y  +   + LG    +    RE LK D  +     +
Sbjct: 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 16/117 (13%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFID---GGTMVSPTVYARRCLSYLMNDMPQ 198
           Q+++     +  +   R   ++ A   Y   +         +     R C  +  ++ P 
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV 289

Query: 199 EALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKNK 250
           EA+    +   + PD   AL  +A       M ++A +  +     +  + + ++  
Sbjct: 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL 346

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 153 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQAQV 209
           G     A   + A+  +   +DG     P     Y RR   +L     + AL D  +   
Sbjct: 10  GKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65

Query: 210 VSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKNK 250
           +  D+  A   +   L   G  ++A +  K     + +  E K+ +
Sbjct: 66  LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 153 GDTAFRAKDFSTAIDCYTQFIDGGTMVSP--TVYARRCLSYLMNDMPQEALGDAMQAQVV 210
           G+  FR K +  AI  Y   ++    +      Y+     Y+     ++ +  + +A  +
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALE----LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68

Query: 211 SPDWPTALYLQAACLFSLGMENDARETLK 239
            PD+   L  +A+    LG   DA   L 
Sbjct: 69  KPDYSKVLLRRASANEGLGKFADAMFDLS 97

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 13/74 (17%)

Query: 1   MLLDLLSGK-----HIPP--------SHALDLIRSKNFLLLMDSALEGHFSNDEGTELVR 47
           MLL+L++G+                      L++ K    L+D  L+G++ ++E  +L++
Sbjct: 224 MLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQ 283

Query: 48  LASRCLQSEARERP 61
           +A  C QS   ERP
Sbjct: 284 VALLCTQSSPMERP 297

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 47.9 bits (115), Expect = 9e-07
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 11/84 (13%)

Query: 1   MLLDLLSGK-----HIPPSHALD-----LIRSKNFLLLMDSALEGHFSNDEGTELVRLAS 50
           +LL++++G      H  P   LD         K     +D  +     +     +  +AS
Sbjct: 223 VLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMND-ADSTSVEAMYSVAS 281

Query: 51  RCLQSEARERPNAKSLVISLMSLQ 74
           +CL  +  +RP+ K +   L  + 
Sbjct: 282 QCLHEKKNKRPDIKKVQQLLQEMT 305

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 19/117 (16%)

Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV---YARRCLSYLMNDMPQEALGDAMQ 206
           K+ G+ A++ KDF TA+  Y +  +    + PT       +   Y       +      +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKE----LDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 207 A-------QVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKNKN 251
           A       +        A        F      DA            T    KK + 
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 120

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 14/91 (15%)

Query: 1   MLLDLLSGK----HIPPSH-------ALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLA 49
           +L ++L  +       P         A++   +     ++D  L      +   +    A
Sbjct: 230 VLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTA 289

Query: 50  SRCLQSEARERPNAKSLVISL---MSLQKEA 77
            +CL   + +RP+   ++  L   + LQ+  
Sbjct: 290 VKCLALSSEDRPSMGDVLWKLEYALRLQESV 320

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 19/117 (16%)

Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV---YARRCLSYLMNDMPQEALGDAMQ 206
           K  G+ A++ KDF  A   Y + I+    + P+    Y  +   Y       E +    +
Sbjct: 12  KDLGNAAYKQKDFEKAHVHYDKAIE----LDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67

Query: 207 AQVVSPDWPT-------ALYLQAACLFSLGMENDARETLK-----DGTNLEAKKNKN 251
           A  V  +          A+             + A +               KK K 
Sbjct: 68  AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKE 124

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 153 GDTAFRAKDFSTAIDCYTQFIDGGTMVSP---TVYARRCLSYLMNDMPQEALGDAMQAQV 209
           G+  F AK+F+ AI  Y   I+    + P     Y+     Y+     ++ +    +A  
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIE----LDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87

Query: 210 VSPDWPTALYLQAACLFSLGMENDARETLK 239
           + PD   AL  +A+   SLG   DA   L 
Sbjct: 88  IKPDHSKALLRRASANESLGNFTDAMFDLS 117

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 1/87 (1%)

Query: 153 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP 212
           G   ++A  +  A   +              +           + ++AL       ++  
Sbjct: 25  GFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83

Query: 213 DWPTALYLQAACLFSLGMENDARETLK 239
           + P   +  A C   LG  + A     
Sbjct: 84  NEPRFPFHAAECHLQLGDLDGAESGFY 110

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 15/111 (13%)

Query: 150 KKHGDTAFRAKDFSTAIDCYTQ---FIDGGTMVSP------------TVYARRCLSYLMN 194
           K+ G+  F+  + + AI  Y +   F                     +        Y  N
Sbjct: 42  KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101

Query: 195 DMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLE 245
               +A+  A +   +  +   ALY         G   +A+E L    +L 
Sbjct: 102 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 17/113 (15%)

Query: 150 KKHGDTAFRAKDFSTAIDCYTQ---FIDGGTMVSP--------------TVYARRCLSYL 192
           ++ G+  F  KD+  AID Y      +D   +                  +YA     YL
Sbjct: 15  RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL 74

Query: 193 MNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLE 245
                 EA   + +          AL+ +A    +    ++A E LK      
Sbjct: 75  NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 13/118 (11%), Positives = 38/118 (32%), Gaps = 14/118 (11%)

Query: 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQ---FIDGGTMVSP-----------TVYARR 187
           +++++   K+ G   F+   +  A+  Y +   +++  +  S              +   
Sbjct: 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202

Query: 188 CLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLE 245
            + +L       A+    +A  +  +    L  +     ++     AR   +    L 
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 10/87 (11%), Positives = 20/87 (22%), Gaps = 1/87 (1%)

Query: 153 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP 212
               +++  +  A   +              +               A+       V+  
Sbjct: 28  AFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86

Query: 213 DWPTALYLQAACLFSLGMENDARETLK 239
             P   +  A CL   G   +A   L 
Sbjct: 87  XEPRFPFHAAECLLQXGELAEAESGLF 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.92
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.88
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.86
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.86
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.85
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.84
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.82
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.82
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.82
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.81
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.79
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.77
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.75
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.75
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.75
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.74
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.74
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.74
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.73
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.73
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.73
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.72
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.72
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.72
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.72
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.72
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.71
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.71
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.71
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.71
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.7
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.7
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.7
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.7
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.7
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.7
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.69
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.68
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.67
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.67
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.67
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.65
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.64
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.64
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.64
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.62
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.62
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.62
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.61
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.59
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.59
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.58
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.58
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.57
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.57
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.56
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.55
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.55
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.55
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.55
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.55
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.55
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.54
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.53
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.53
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.53
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.53
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.52
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.52
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.52
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.51
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.51
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.51
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.5
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.5
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.5
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.5
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.49
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.49
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.49
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.49
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.48
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.48
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.48
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.48
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.48
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.47
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.47
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.47
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.46
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.46
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.46
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.46
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.46
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.45
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.45
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.45
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.44
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.44
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.44
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.43
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.43
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.43
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.43
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.42
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.41
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.39
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.38
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.37
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.37
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.35
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.35
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.34
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.34
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.34
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.33
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.33
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.33
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.33
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.32
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.32
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.32
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.31
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.31
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.31
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.3
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.3
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.3
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.3
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.3
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.3
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.29
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.29
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.29
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.29
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.28
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.28
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.28
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.27
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.27
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.27
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.26
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.26
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.25
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.25
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.25
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.25
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.25
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.24
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.24
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.23
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.23
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.23
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.23
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.22
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.22
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.21
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.21
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.19
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.19
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.19
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.18
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.17
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.17
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.17
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.15
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.15
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.14
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.13
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.12
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.11
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.1
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.1
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.1
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.1
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.08
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.06
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.05
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.04
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.02
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.98
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.96
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.95
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.95
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.92
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.92
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.89
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.88
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.83
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.77
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.76
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.74
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.74
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.73
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.67
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.64
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.57
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.53
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.49
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.41
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.41
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.38
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.38
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.35
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.34
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.23
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.23
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.19
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.16
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.12
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.1
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.99
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.89
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.75
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.68
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.61
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	97.59
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	97.57
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.54
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	97.49
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.42
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.41
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.4
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	97.35
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.24
4aoj_A	329	High affinity nerve growth factor receptor; transf	97.14
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.99
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	96.91
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	96.85
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.83
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.79
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	96.7
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.7
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.69
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.6
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	96.46
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	96.45
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.24
3soc_A	322	Activin receptor type-2A; structural genomics cons	96.24
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.11
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	95.9
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.79
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.78
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.77
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	95.75
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.71
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	95.66
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	95.6
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	95.59
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	95.56
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	95.54
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	95.44
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	95.35
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	95.21
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	95.08
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	95.07
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.07
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	95.06
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	94.96
2a19_B	284	Interferon-induced, double-stranded RNA-activated	94.84
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	94.82
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	94.79
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	94.7
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.57
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.46
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	94.45
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.37
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	94.22
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.1
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	93.89
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	93.85
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.57
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	93.44
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	93.43
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.25
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	93.21
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	93.03
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.96
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	92.73
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.64
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	92.62
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	92.62
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	92.32
3q4u_A	301	Activin receptor type-1; structural genomics conso	92.29
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	92.19
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.01
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.0
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.99
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	91.82
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	91.8
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	91.58
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	91.38
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	91.29
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	91.08
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	90.98
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	90.93
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	90.68
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	90.57
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	90.36
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	90.26
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	90.24
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	90.18
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	90.16
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	90.15
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	90.12
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	90.02
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	89.85
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	89.69
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	89.68
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	89.66
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	89.59
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	89.56
3fme_A	290	Dual specificity mitogen-activated protein kinase;	89.35
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	89.29
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	89.27
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	89.27
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	89.23
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	89.03
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	88.86
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	88.85
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	88.84
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	88.8
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	88.77
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	88.76
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	88.74
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	88.7
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	88.53
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	88.5
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	88.35
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	88.29
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	88.26
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	88.21
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	88.11
3pls_A	298	Macrophage-stimulating protein receptor; protein k	87.99
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	87.99
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	87.98
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	87.89
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	87.84
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	87.83
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	87.62
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	87.56
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	87.55
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	87.44
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	87.43
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	87.43
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	87.36
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	87.31
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	87.31
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	87.22
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	87.21
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	87.2
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	87.13
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	86.86
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	86.08
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	86.01
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	85.86
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	85.66
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	85.59
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	85.43
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	85.41
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	85.2
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	85.16
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	85.09
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	84.95
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	84.94
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	84.86
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	84.72
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	84.47
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	84.46
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	84.37
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	84.3
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	83.89
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	83.83
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	83.5
3ork_A	311	Serine/threonine protein kinase; structural genomi	81.43
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	81.17
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	81.15
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	81.05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	80.62

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.92  E-value=3.7e-24  Score=156.44  Aligned_cols=107  Identities=18%  Similarity=0.281  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      +|+.++.++++|+.+++.|+|++|+.+|+++|+++|. ++.+|+++|.+|..+|++++|+.+|++|++++|+++.+|+++
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            4677999999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |.++..+|++++|+.+|+++++++|++.
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l~P~~~  115 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQVDPSNE  115 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence            9999999999999999999999999864

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.88  E-value=5.4e-22  Score=149.12  Aligned_cols=107  Identities=15%  Similarity=0.070  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV------S-----PTVYARRCLSYLMNDMPQEALGDAMQAQVV-  210 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-  210 (251)
                      ...+..+++.|+.+++.|+|++|+.+|++||+++|+.      +     +.+|.|+|.++..+|+|++|+.+|++||++ 
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            4568899999999999999999999999999999971      2     339999999999999999999999999999 


Q ss_pred             ------CCCChHHH----HHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          211 ------SPDWPTAL----YLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       211 ------~p~~~~~~----~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                            +|+++++|    |++|.++..+|++++|+.+|+++++++|++.
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence                  99999999    9999999999999999999999999999864

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.86  E-value=4.2e-21  Score=144.61  Aligned_cols=106  Identities=9%  Similarity=-0.028  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      +|..+..++..|..+++.|+|++|+..|+++++++|. ++.+|+++|.++..+|+|++|+..|++|++++|+++.+|+++
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT  110 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence            5778899999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |.+|..+|++++|+.+|+++++++|+.
T Consensus       111 g~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            999999999999999999999999975

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.86  E-value=4.6e-21  Score=140.02  Aligned_cols=105  Identities=16%  Similarity=0.138  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-------
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP-------  215 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------  215 (251)
                      .+.|..+++.|+.+++.|+|++|+.+|++||+++|+ ++.+|+++|.+|+.+|+|++|+.+|++|++++|++.       
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            355888999999999999999999999999999998 999999999999999999999999999999998763       


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          216 TALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+|+++|.++..+|++++|+.+|+++++++|+.
T Consensus        84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence            689999999999999999999999999988863

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.85  E-value=1.2e-20  Score=143.08  Aligned_cols=105  Identities=20%  Similarity=0.189  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG------------------GTMVSPTVYARRCLSYLMNDMPQEALGDAM  205 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~  205 (251)
                      ..+..++++|+.+++.|+|++|+..|++++++                  +|. +..+|+++|.||+.+|+|++|+.+|.
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK-NIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHT-HHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            45889999999999999999999999999999                  666 77899999999999999999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          206 QAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       206 ~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +|+.++|+++++|+++|.+|..+|+|++|+.+|+++++++|++.
T Consensus        88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            99999999999999999999999999999999999999999864

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=3.5e-20  Score=134.31  Aligned_cols=102  Identities=21%  Similarity=0.261  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      ..++.++.+|..+++.|+|++|+..|+++++++|. ++.+|+++|.+++.+|++++|+.+|+++++++|+++.+|+.+|.
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45788999999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhh
Q 025537          224 CLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      ++..+|++++|+.+|+++++++|
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p  103 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDA  103 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999993

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.82  E-value=5.1e-20  Score=138.29  Aligned_cols=107  Identities=12%  Similarity=0.123  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .++.+..++..|..+++.|+|++|+.+|+++|+++|+ ++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+.+
T Consensus        27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  105 (150)
T 4ga2_A           27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKI  105 (150)
T ss_dssp             HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            6677888999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHH-HHHHHhhhhhcc
Q 025537          222 AACLFSLGMENDARET-LKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~-~~~al~l~P~~~  249 (251)
                      |.+|..+|++++|... ++++++++|++.
T Consensus       106 a~~~~~~~~~~~aa~~~~~~al~l~P~~~  134 (150)
T 4ga2_A          106 AELLCKNDVTDGRAKYWVERAAKLFPGSP  134 (150)
T ss_dssp             HHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence            9999999999887776 589999999863

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.82  E-value=2.1e-19  Score=134.66  Aligned_cols=106  Identities=11%  Similarity=0.052  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+...|..++..|+|++|+..|++++..+|. ++.+|+++|.++..+|+|++|+..|++|+.++|+++.+|+.+
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   95 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA   95 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            5677889999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |.+|..+|++++|+.+|+++++++|++
T Consensus        96 g~~~~~~g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A           96 AECLLQXGELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            999999999999999999999999974

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.82  E-value=3.9e-19  Score=134.84  Aligned_cols=105  Identities=27%  Similarity=0.365  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      ..+..++..|..++..|+|++|+.+|+++++++|. ++.+|+++|.+|+.+|+|++|+.+|+++++++|+++.+|+.+|.
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45788999999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          224 CLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +|..+|++++|+.+|+++++++|++.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~  113 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGG  113 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCch
Confidence            99999999999999999999999875

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.81  E-value=6.3e-19  Score=130.74  Aligned_cols=106  Identities=12%  Similarity=0.101  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+...|..++..|+|++|+..|++++..+|. ++.+|+++|.++..+|++++|+..|++|+.++|+++.+++.+
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   92 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA   92 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            4566888999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |.+|..+|++++|+.+|+++++++|++
T Consensus        93 g~~~~~~g~~~~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A           93 AECHLQLGDLDGAESGFYSARALAAAQ  119 (142)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999965

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.79  E-value=1.1e-18  Score=126.16  Aligned_cols=101  Identities=12%  Similarity=0.040  Sum_probs=92.5

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  227 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  227 (251)
                      .+...|..+++.|++++|+..|+++++.+|+ ++.+|+++|.++..+|++++|+..+++|++++|+++.+++.+|.++..
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhhhhcc
Q 025537          228 LGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       228 ~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +|++++|+..|+++++++|++.
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHC------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCC
Confidence            9999999999999999999864

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.77  E-value=1.1e-17  Score=122.37  Aligned_cols=103  Identities=21%  Similarity=0.407  Sum_probs=99.8

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      .+..+...|..++..|+|++|+.+|+++++.+|. ++.+|+++|.+++.+|++++|+..++++++++|+++.+|+.+|.+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            3678899999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +..+|++++|+..|+++++++|+.
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~~p~~  110 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSLAKEQ  110 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhHHHHHHHHHHHHHHChhH
Confidence            999999999999999999999983

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.75  E-value=6.7e-18  Score=156.31  Aligned_cols=113  Identities=12%  Similarity=0.017  Sum_probs=103.7

Q ss_pred             hhhhhHH-HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 025537          135 SFQMWTS-QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD  213 (251)
Q Consensus       135 ~~~~~~~-~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  213 (251)
                      .++...+ ++..+..+.++|..+.+.|++++|+.+|++||+++|+ ++.+|+++|.++..+|++++|+..|++|++++|+
T Consensus        31 ~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~  109 (723)
T 4gyw_A           31 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA  109 (723)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3444444 5667889999999999999999999999999999998 9999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          214 WPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       214 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ++.+|+++|.+|..+|++++|+.+|++|++++|++
T Consensus       110 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  144 (723)
T 4gyw_A          110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF  144 (723)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999975

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.75  E-value=7.2e-18  Score=133.14  Aligned_cols=102  Identities=20%  Similarity=0.090  Sum_probs=82.8

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHh
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYAR----------------RCLSYLMNDMPQEALGDAMQAQV  209 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~  209 (251)
                      ++.+..+|..++..|+|++|+..|+++++.+|+ ++.+|+.                +|.+|..+|++++|+..|+++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            556677788888888888888888888888887 7777777                88888888888888888888888


Q ss_pred             hCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          210 VSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       210 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ++|+++.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~  121 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN  121 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            888888888888888888888888888888888888865

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.75  E-value=2.3e-17  Score=139.87  Aligned_cols=106  Identities=11%  Similarity=0.105  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---------------PTVYARRCLSYLMNDMPQEALGDAMQ  206 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~  206 (251)
                      .+..+..++..|+.+++.|+|++|+.+|++|++++|. +               ..+|+++|.+|+++|+|++|+.+|++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  221 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEY-ESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK  221 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc-cccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6778999999999999999999999999999999998 6               69999999999999999999999999


Q ss_pred             HHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          207 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       207 al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus       222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            999999999999999999999999999999999999999975

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.74  E-value=1.4e-17  Score=154.06  Aligned_cols=106  Identities=11%  Similarity=0.016  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .|..++.+.++|+.+.++|+|++|+.+|++||+++|+ ++.+|+++|.+|.++|++++|+..|++|++++|+++.+|+++
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3567899999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |.+|..+|++++|+++|+++++++|++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~  110 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAF  110 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999985

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.74  E-value=2.1e-17  Score=145.77  Aligned_cols=107  Identities=12%  Similarity=0.177  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---------------PTVYARRCLSYLMNDMPQEALGDAMQ  206 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~  206 (251)
                      .+..+..++++|+.+++.|+|++|+.+|++|++++|. +               ..+|+|+|.||+++|+|++|+.+|++
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  342 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK  342 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            6678999999999999999999999999999999998 6               69999999999999999999999999


Q ss_pred             HHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          207 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       207 al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |++++|+++++|+++|.+|..+|+|++|+.+|+++++++|++.
T Consensus       343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~  385 (457)
T 1kt0_A          343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  385 (457)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred             HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999999999999999864

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.74  E-value=4.8e-17  Score=127.00  Aligned_cols=106  Identities=19%  Similarity=0.261  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP----------------TVYARRCLSYLMNDMPQEALGDAM  205 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----------------~~~~~~a~~~~~~~~~~~A~~~~~  205 (251)
                      .+..+..+...|..++..|+|++|+..|.+++++.|. ++                .+|.++|.+++.+|+|++|+.+|+
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  112 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS  112 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            4566889999999999999999999999999999987 65                899999999999999999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          206 QAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       206 ~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +++.++|+++.+++++|.+|..+|++++|+.+|+++++++|++
T Consensus       113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  155 (198)
T 2fbn_A          113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  155 (198)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            9999999999999999999999999999999999999999975

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.73  E-value=8.8e-17  Score=113.49  Aligned_cols=103  Identities=24%  Similarity=0.390  Sum_probs=99.7

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      .+..+...|..++..|+|++|+..|+++++.+|. +..++.++|.++..+|++++|+..+++++.++|+++.+++.+|.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   81 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            4678899999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +..+|++++|...|+++++++|++
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~~~~~  105 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKHEANN  105 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHhhHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999975

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.73  E-value=1.1e-16  Score=115.72  Aligned_cols=104  Identities=21%  Similarity=0.278  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      .+..++..|..++..|+|++|+..|+++++.+|. +..+++++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            3677889999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +..+|++++|+..|+++++++|++.
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~p~~~  118 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLDSSCK  118 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCch
Confidence            9999999999999999999999863

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.73  E-value=5.6e-17  Score=124.67  Aligned_cols=106  Identities=18%  Similarity=0.165  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+...|..+...++++.|+..+.++++.+|. +..++..+|.+|..+|++++|+..|+++++++|+++.+|+.+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  147 (184)
T 3vtx_A           69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSI  147 (184)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHH
Confidence            3445778889999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |.+|..+|++++|+.+|++|++++|++
T Consensus       148 g~~~~~~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          148 GLAYEGKGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence            999999999999999999999999985

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.72  E-value=5.1e-18  Score=127.25  Aligned_cols=97  Identities=11%  Similarity=-0.080  Sum_probs=90.3

Q ss_pred             HHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCH
Q 025537          152 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGME  231 (251)
Q Consensus       152 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~  231 (251)
                      .|..+..+|++++|+..|.+++..+|. ++..++++|.+|+.+|+|++|+..|+++++++|+++.+|+.+|.+|..+|++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            578888899999999999999999997 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcc
Q 025537          232 NDARETLKDGTNLEAKKN  249 (251)
Q Consensus       232 ~~A~~~~~~al~l~P~~~  249 (251)
                      ++|+.+|+++++++|++.
T Consensus        82 ~~A~~~~~~al~~~p~~~   99 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQK   99 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhCCCCH
Confidence            999999999999999863

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.72  E-value=6.3e-17  Score=133.73  Aligned_cols=103  Identities=21%  Similarity=0.408  Sum_probs=100.0

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      +..++..|+.++..|+|++|+..|+++++.+|. ++.+|+++|.+|..+|++++|+.++++|++++|+++.+++++|.+|
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            677899999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          226 FSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ..+|++++|+..|+++++++|++.
T Consensus        83 ~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCccch
Confidence            999999999999999999999863

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.72  E-value=3.1e-17  Score=130.32  Aligned_cols=103  Identities=14%  Similarity=0.209  Sum_probs=99.7

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      .+..+...|..++..|++++|+..|+++++.+|+ ++.+|+++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~   82 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA   82 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            3567889999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHhC-----------CCHHHHHHHHHHHHhhhhhc
Q 025537          225 LFSL-----------GMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       225 ~~~~-----------~~~~~A~~~~~~al~l~P~~  248 (251)
                      +..+           |++++|+..|+++++++|++
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~  117 (217)
T 2pl2_A           83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY  117 (217)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc
Confidence            9999           99999999999999999985

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.72  E-value=8.4e-18  Score=126.03  Aligned_cols=91  Identities=13%  Similarity=0.065  Sum_probs=85.5

Q ss_pred             hhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537          158 RAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMP----------QEALGDAMQAQVVSPDWPTALYLQAACLFS  227 (251)
Q Consensus       158 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  227 (251)
                      +.+.|++|+..|.++++++|. ++.+|+++|.++..++++          ++|+..|++||+++|+++.+|+++|.+|..
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            457899999999999999999 999999999999999876          599999999999999999999999999998


Q ss_pred             CC-----------CHHHHHHHHHHHHhhhhhcc
Q 025537          228 LG-----------MENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       228 ~~-----------~~~~A~~~~~~al~l~P~~~  249 (251)
                      +|           +|++|+++|++|++++|++.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            85           89999999999999999863

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.72  E-value=1.8e-17  Score=142.92  Aligned_cols=106  Identities=7%  Similarity=-0.047  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHhHHHhhcC-HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKD-FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYL  220 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  220 (251)
                      ++..+..+..+|..+...|+ |++|+.+|+++|+++|+ +..+|+++|.++..+|++++|+.+|++||+++|+++.+|++
T Consensus       127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~  205 (382)
T 2h6f_A          127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH  205 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHH
Confidence            66778899999999999996 99999999999999998 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          221 QAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       221 ~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +|.++..+|++++|+.+|+++|+++|++
T Consensus       206 lg~~~~~~g~~~eAl~~~~~al~l~P~~  233 (382)
T 2h6f_A          206 RQWVIQEFKLWDNELQYVDQLLKEDVRN  233 (382)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999975

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.71  E-value=2.9e-16  Score=117.91  Aligned_cols=105  Identities=26%  Similarity=0.374  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      ...+..+...|..++..|+|++|+..|.++++.+|. +..+++++|.++..+|++++|+..+++++.++|+++.+++.+|
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a   88 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   88 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            355888999999999999999999999999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          223 ACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .++..+|++++|+..|+++++++|++
T Consensus        89 ~~~~~~~~~~~A~~~~~~a~~~~p~~  114 (166)
T 1a17_A           89 ASNMALGKFRAALRDYETVVKVKPHD  114 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999975

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.9e-16  Score=116.69  Aligned_cols=103  Identities=23%  Similarity=0.242  Sum_probs=98.5

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      +..++..|..++..|+|++|+.+|+++++.+|+ +   ..+|.++|.+++.+|++++|+..+++++.++|+++.+++.+|
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            567789999999999999999999999999997 6   899999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          223 ACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .++..+|++++|+.+|+++++++|++.
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~~~p~~~  133 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVSLEPKNK  133 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence            999999999999999999999999753

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.71  E-value=4.3e-16  Score=111.81  Aligned_cols=106  Identities=19%  Similarity=0.262  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+...|..++..|+|++|+..|.++++.+|. +..++.++|.++..+|++++|+..+.+++.++|+++.+++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            3556888999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |.++..+|++++|+..|+++++++|++
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~  113 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELDPDN  113 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence            999999999999999999999999975

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.71  E-value=1.3e-16  Score=125.79  Aligned_cols=106  Identities=9%  Similarity=-0.002  Sum_probs=97.2

Q ss_pred             HHHHHHHHHH----------------HHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025537          142 QMQETLNSKK----------------HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAM  205 (251)
Q Consensus       142 ~~~~a~~~~~----------------~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~  205 (251)
                      .|..+..+..                .|..++..|+|++|+..|+++++++|+ +..+|+++|.++..+|++++|+..|+
T Consensus        34 ~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~  112 (208)
T 3urz_A           34 NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYE  112 (208)
T ss_dssp             CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5666777777                999999999999999999999999998 99999999999999999999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHhC-----------------------------------CCHHHHHHHHHHHHhhhhhc
Q 025537          206 QAQVVSPDWPTALYLQAACLFSL-----------------------------------GMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       206 ~al~~~p~~~~~~~~~g~~~~~~-----------------------------------~~~~~A~~~~~~al~l~P~~  248 (251)
                      ++++++|+++.+|+.+|.+|+..                                   |+|++|+.+|+++++++|+.
T Consensus       113 ~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          113 KILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            99999999999998888876443                                   46899999999999999974

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.70  E-value=1.6e-16  Score=114.74  Aligned_cols=100  Identities=13%  Similarity=0.063  Sum_probs=95.4

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP---TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQ  221 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~  221 (251)
                      .++..|..++..|+|++|+..|+++++.+|+ +.   .+++++|.+++.+|++++|+..+++++..+|++   +.+++.+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            4678899999999999999999999999997 66   799999999999999999999999999999999   8999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |.++..+|++++|+..|+++++..|++
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            999999999999999999999999975

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.70  E-value=1.3e-16  Score=126.71  Aligned_cols=105  Identities=13%  Similarity=0.038  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHhHHHhh-----------cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537          142 QMQETLNSKKHGDTAFRA-----------KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV  210 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  210 (251)
                      +|..+..+...|..+...           |++++|+..|+++++++|+ ++.+|.++|.++..+|++++|+..|++|+++
T Consensus        69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  147 (217)
T 2pl2_A           69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALAL  147 (217)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            566788899999999999           9999999999999999998 9999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          211 SPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       211 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      + +++.+++.+|.+|..+|++++|+..|+++++++|++
T Consensus       148 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~  184 (217)
T 2pl2_A          148 E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD  184 (217)
T ss_dssp             C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            9 999999999999999999999999999999999975

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.70  E-value=5.4e-17  Score=137.68  Aligned_cols=107  Identities=15%  Similarity=0.186  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH-----------------HHHHHHHHHHHhcCCHHHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP-----------------TVYARRCLSYLMNDMPQEALGDA  204 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~  204 (251)
                      .+..+..++.+|+.+++.|+|++|+.+|++|+++.|. +.                 .+|+++|.||+++|+|++|+.+|
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~  253 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD-DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC  253 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH-HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5667899999999999999999999999999999986 55                 38999999999999999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          205 MQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       205 ~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ++|++++|+++++|+++|.+|..+|+|++|+.+|+++++++|++.
T Consensus       254 ~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~  298 (338)
T 2if4_A          254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK  298 (338)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence            999999999999999999999999999999999999999999864

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.70  E-value=1e-16  Score=138.24  Aligned_cols=106  Identities=13%  Similarity=-0.055  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCChHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM-PQEALGDAMQAQVVSPDWPTALYL  220 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~  220 (251)
                      .+..+..+...|..+...|++++|+..|+++|+++|+ +..+|+++|.++..+|+ +++|+.+|++|+.++|+++.+|++
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~  171 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  171 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            4667889999999999999999999999999999998 99999999999999997 999999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          221 QAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       221 ~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +|.++..+|++++|+.+|+++|+++|++
T Consensus       172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~  199 (382)
T 2h6f_A          172 RRVLVEWLRDPSQELEFIADILNQDAKN  199 (382)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence            9999999999999999999999999986

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.70  E-value=1.5e-16  Score=146.75  Aligned_cols=102  Identities=11%  Similarity=-0.073  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      ++..+..+|..++..|+|++|+..|++|++++|+ ++.+|+++|.++..+|++++ +..|++|++++|+++.+|+++|.+
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~  543 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA  543 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence            4556666666666666666666666666666666 66666666666666666666 666666666667777777777777


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +..+|++++|+.+|+++++++|++
T Consensus       544 ~~~~g~~~~A~~~~~~al~l~P~~  567 (681)
T 2pzi_A          544 RSAEGDRVGAVRTLDEVPPTSRHF  567 (681)
T ss_dssp             HHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred             HHHcCCHHHHHHHHHhhcccCccc
Confidence            777777777777777777776654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.70  E-value=1.5e-16  Score=136.57  Aligned_cols=106  Identities=20%  Similarity=0.214  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHc----------------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFID----------------GGTMVSPTVYARRCLSYLMNDMPQEALGDAM  205 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~  205 (251)
                      ....+..++..|+.+++.|+|++|+.+|++|++                .+|. +..+|+++|.+|+++|+|++|+.+|+
T Consensus       219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~g~~~~A~~~~~  297 (370)
T 1ihg_A          219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV-ALSCVLNIGACKLKMSDWQGAVDSCL  297 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH-HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH-HHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            455688899999999999999999999999998                7776 88999999999999999999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          206 QAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       206 ~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +|++++|+++++|+++|.+|..+|++++|+.+|+++++++|++
T Consensus       298 ~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~  340 (370)
T 1ihg_A          298 EALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED  340 (370)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999975

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.69  E-value=3.2e-16  Score=124.66  Aligned_cols=103  Identities=15%  Similarity=0.097  Sum_probs=98.9

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGT-MVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      +..++..|..++..|+|++|+..|+++++++| . +..+++++|.++..+|++++|+..|+++++++|+++.+|+.+|.+
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            47788999999999999999999999999998 6 889999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |..+|++++|+..|+++++++|++.
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~  110 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNA  110 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcH
Confidence            9999999999999999999999853

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.68  E-value=4.2e-16  Score=109.04  Aligned_cols=102  Identities=14%  Similarity=0.057  Sum_probs=96.9

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD--WPTALYLQAAC  224 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~  224 (251)
                      ..+...|..++..|+|++|+.+|+++++.+|. +..+++++|.++..+|++++|+..++++++++|+  ++.+++.+|.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            34557899999999999999999999999998 9999999999999999999999999999999999  99999999999


Q ss_pred             HHhC-CCHHHHHHHHHHHHhhhhhcc
Q 025537          225 LFSL-GMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       225 ~~~~-~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +..+ |++++|+.+|+++++.+|...
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            9999 999999999999999999764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.67  E-value=5e-16  Score=111.61  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------hH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-------PT  216 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~  216 (251)
                      +.+..+...|..++..|+|++|+.+|.++++.+|. +..+++++|.++..+|++++|+..+++++.+.|++       +.
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            34778899999999999999999999999999998 99999999999999999999999999999999887       99


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          217 ALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       217 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      +++.+|.++..+|++++|+..|+++++++|+
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999884

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.67  E-value=7.6e-17  Score=115.40  Aligned_cols=90  Identities=14%  Similarity=0.057  Sum_probs=82.1

Q ss_pred             hhcCHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHH
Q 025537          158 RAKDFSTAIDCYTQFIDG---GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDA  234 (251)
Q Consensus       158 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A  234 (251)
                      ..|+|++|+.+|++++++   +|. +..+|+++|.+|..+|+|++|+..++++++++|+++.+++.+|.++..+|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence            368999999999999999   687 8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhc
Q 025537          235 RETLKDGTNLEAKK  248 (251)
Q Consensus       235 ~~~~~~al~l~P~~  248 (251)
                      +..|+++++++|++
T Consensus        81 ~~~~~~al~~~p~~   94 (117)
T 3k9i_A           81 VELLLKIIAETSDD   94 (117)
T ss_dssp             HHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhCCCc
Confidence            99999999999875

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.67  E-value=1.3e-15  Score=116.90  Aligned_cols=112  Identities=18%  Similarity=0.143  Sum_probs=97.1

Q ss_pred             hhhhHH-HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537          136 FQMWTS-QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW  214 (251)
Q Consensus       136 ~~~~~~-~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  214 (251)
                      ++.... +|..+..+...|..++..|++++|+..+.+++..+|. +..++.++|.++...++++.|+..+.+++.++|++
T Consensus        28 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~  106 (184)
T 3vtx_A           28 YKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY  106 (184)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            343333 6667888888888888888888888888888888887 88888888888888899999999999999999999


Q ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          215 PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +.+++.+|.++..+|++++|+..|+++++++|++
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~  140 (184)
T 3vtx_A          107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF  140 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh
Confidence            9999999999999999999999999999999975

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.65  E-value=6.3e-15  Score=104.75  Aligned_cols=102  Identities=16%  Similarity=0.222  Sum_probs=98.2

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      +..+...|..++..|++++|+..|.++++.+|. +..+++++|.++...|++++|+..+++++..+|+++.+++.+|.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            567788999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhc
Q 025537          226 FSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ...|++++|+..|+++++++|++
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~  110 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNN  110 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCc
Confidence            99999999999999999999975

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.64  E-value=1.7e-15  Score=115.72  Aligned_cols=107  Identities=18%  Similarity=0.130  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHhhCCCChHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLS-YLMNDMP--QEALGDAMQAQVVSPDWPTAL  218 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~  218 (251)
                      .+..+..+...|..++..|+|++|+.+|.++++++|. ++.++.++|.+ +...|++  ++|+..+++++.++|+++.++
T Consensus        40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  118 (177)
T 2e2e_A           40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL  118 (177)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHH
Confidence            3445778899999999999999999999999999998 99999999999 8899999  999999999999999999999


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          219 YLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       219 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +.+|.++..+|++++|+..|+++++++|++.
T Consensus       119 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          119 MLLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            9999999999999999999999999999864

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.64  E-value=3e-15  Score=118.94  Aligned_cols=103  Identities=17%  Similarity=0.177  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-------H
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP-------T  216 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~  216 (251)
                      .+...+...|..++..|+|++|+.+|+++++.+|. +..+|.++|.+|..+|++++|+..++++++++|+++       .
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  118 (228)
T 4i17_A           40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAI  118 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            44567778999999999999999999999999998 999999999999999999999999999999999999       7


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          217 ALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       217 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      +|+.+|.++..+|++++|+..|+++++++|+
T Consensus       119 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A          119 YYLKEGQKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            7999999999999999999999999999998

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.64  E-value=3.8e-15  Score=116.83  Aligned_cols=102  Identities=18%  Similarity=0.112  Sum_probs=97.8

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh----------
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP----------  215 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------  215 (251)
                      +..+...|..++..|+|++|+..|+++++.+|. +..+|+++|.++..+|++++|+..+++++++.|++.          
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  115 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  115 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence            567889999999999999999999999999998 999999999999999999999999999999888877          


Q ss_pred             ------HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          216 ------TALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       216 ------~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                            .+++.+|.++..+|++++|+..|+++++++|++
T Consensus       116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence                  999999999999999999999999999999975

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.62  E-value=8.4e-15  Score=118.71  Aligned_cols=105  Identities=11%  Similarity=-0.021  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      +..+..+...|..++..|+|++|+.+|+++++.+|. +..+|.++|.++..+|++++|+..+++++.++|+++.+++.+|
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  118 (275)
T 1xnf_A           40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence            456888999999999999999999999999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          223 ACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .++..+|++++|+..|+++++++|++
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~  144 (275)
T 1xnf_A          119 IALYYGGRDKLAQDDLLAFYQDDPND  144 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999975

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.62  E-value=5.7e-16  Score=137.30  Aligned_cols=105  Identities=26%  Similarity=0.368  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      +.+..+..+|..+++.|+|++|+.+|++|++++|+ ++.+|+++|.+|..+|++++|+.++++|++++|+++.+|+++|.
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   82 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   82 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            44667788899999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          224 CLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +|..+|++++|+..|+++++++|++.
T Consensus        83 ~~~~~g~~~eA~~~~~~al~~~p~~~  108 (477)
T 1wao_1           83 SNMALGKFRAALRDYETVVKVKPHDK  108 (477)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999999864

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.62  E-value=2.8e-16  Score=110.40  Aligned_cols=95  Identities=15%  Similarity=0.236  Sum_probs=89.9

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW------PTAL  218 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~  218 (251)
                      .+..+...|..++..|+|++|+..|+++++++|. ++.+|+++|.++..+|++++|+..|+++++++|++      ..++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            3678899999999999999999999999999998 99999999999999999999999999999999999      9999


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHH
Q 025537          219 YLQAACLFSLGMENDARETLKD  240 (251)
Q Consensus       219 ~~~g~~~~~~~~~~~A~~~~~~  240 (251)
                      +++|.++..+|++++|+..|++
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHhHhhhHhHHHH
Confidence            9999999999999988877664

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.61  E-value=1.7e-14  Score=115.55  Aligned_cols=104  Identities=20%  Similarity=0.259  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+...|..++..|+|++|+..|+++++.+|. ++.+|.++|.++..+|++++|+..++++++++|+++.+|+.+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  213 (258)
T 3uq3_A          135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK  213 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            4567889999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          222 AACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      |.++..+|++++|+..|+++++++|
T Consensus       214 ~~~~~~~g~~~~A~~~~~~a~~~~~  238 (258)
T 3uq3_A          214 ATAQIAVKEYASALETLDAARTKDA  238 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCh
Confidence            9999999999999999999999993

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.59  E-value=1.9e-14  Score=112.80  Aligned_cols=101  Identities=14%  Similarity=0.093  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      ++..++..|..++..|+|++|+..|++++  +|  ++.+|+++|.+|..+|++++|+..|++++.++|+++.+|+.+|.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~   80 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            46678899999999999999999999996  43  688999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +..+|++++|+.+|++++++.|++.
T Consensus        81 ~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCcc
Confidence            9999999999999999999998754

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.59  E-value=6.9e-15  Score=106.87  Aligned_cols=90  Identities=14%  Similarity=0.076  Sum_probs=82.3

Q ss_pred             hhhhhHH-HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 025537          135 SFQMWTS-QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD  213 (251)
Q Consensus       135 ~~~~~~~-~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  213 (251)
                      .++.... +|..+..+..+|..++..|+|++|+..|+++|+++|+ +..+|+++|.++..+|++++|+.+|+++++++|+
T Consensus        35 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~  113 (126)
T 4gco_A           35 HYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS  113 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence            3444333 6677899999999999999999999999999999998 9999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHH
Q 025537          214 WPTALYLQAACL  225 (251)
Q Consensus       214 ~~~~~~~~g~~~  225 (251)
                      ++.++..++.++
T Consensus       114 ~~~a~~~l~~~l  125 (126)
T 4gco_A          114 NEEAREGVRNCL  125 (126)
T ss_dssp             CHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhc
Confidence            999999998764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.58  E-value=1.6e-14  Score=117.33  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=97.8

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTAL  218 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~  218 (251)
                      .+..++.+|..+++.|+|++|+..|+++++..|. +   ..+++++|.+|+.+|+|++|+..|++++++.|++   +.++
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            3678899999999999999999999999999998 7   8999999999999999999999999999998854   6899


Q ss_pred             HHHHHHHHh--------CCCHHHHHHHHHHHHhhhhhcc
Q 025537          219 YLQAACLFS--------LGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       219 ~~~g~~~~~--------~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +.+|.++..        +|++++|+..|+++++++|++.
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            999999999        9999999999999999999864

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.58  E-value=1.3e-15  Score=114.40  Aligned_cols=84  Identities=7%  Similarity=-0.235  Sum_probs=79.8

Q ss_pred             HHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537          165 AIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       165 A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l  244 (251)
                      +-..|.++++++|+ +..+++++|.+++++|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+.+|++++++
T Consensus        21 ~~~~l~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           21 SGATLKDINAIPDD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL   99 (151)
T ss_dssp             TSCCTGGGCCSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHhCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            34568889999998 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcc
Q 025537          245 EAKKN  249 (251)
Q Consensus       245 ~P~~~  249 (251)
                      +|++.
T Consensus       100 ~P~~~  104 (151)
T 3gyz_A          100 GKNDY  104 (151)
T ss_dssp             SSSCC
T ss_pred             CCCCc
Confidence            99863

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.57  E-value=1.7e-15  Score=139.83  Aligned_cols=104  Identities=9%  Similarity=-0.081  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      +..+..+..+|..++..|+|++|+..|+++++.+|+ +..+|+++|.+++.+|++++|+..|++|++++|+++.+|+.+|
T Consensus       430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg  508 (681)
T 2pzi_A          430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALA  508 (681)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred             ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            344677889999999999999999999999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          223 ACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .++..+|++++ +.+|+++++++|++
T Consensus       509 ~~~~~~g~~~~-~~~~~~al~~~P~~  533 (681)
T 2pzi_A          509 ATAELAGNTDE-HKFYQTVWSTNDGV  533 (681)
T ss_dssp             HHHHHHTCCCT-TCHHHHHHHHCTTC
T ss_pred             HHHHHcCChHH-HHHHHHHHHhCCch
Confidence            99999999999 99999999999985

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.57  E-value=2.7e-14  Score=101.46  Aligned_cols=86  Identities=15%  Similarity=0.134  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 025537          163 STAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGT  242 (251)
Q Consensus       163 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  242 (251)
                      ++|+..|.++++.+|. ++.+|+++|.+|+.+|++++|+..|++++.++|+++.+|+.+|.+|..+|++++|+..|++++
T Consensus         2 ~~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            2 QAITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3688999999999998 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcc
Q 025537          243 NLEAKKN  249 (251)
Q Consensus       243 ~l~P~~~  249 (251)
                      +++|+..
T Consensus        81 ~~~~~~~   87 (115)
T 2kat_A           81 AAAQSRG   87 (115)
T ss_dssp             HHHHHHT
T ss_pred             Hhccccc
Confidence            9999753

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.56  E-value=1.3e-13  Score=98.92  Aligned_cols=103  Identities=17%  Similarity=0.223  Sum_probs=97.9

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      ....+...|..++..|++++|+..|.++++..|. +..+++++|.++...|++++|+..+++++...|+++.+++.+|.+
T Consensus        34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  112 (136)
T 2fo7_A           34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA  112 (136)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            4567788899999999999999999999999998 899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +...|++++|...|+++++++|++
T Consensus       113 ~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          113 YYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHccHHHHHHHHHHHHccCCCC
Confidence            999999999999999999999863

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.55  E-value=4.5e-14  Score=119.66  Aligned_cols=103  Identities=17%  Similarity=0.190  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      .+..+...|..+...|++++|+..|+++++.+|. ++.+|+++|.++..+|++++|+..|+++++++|+++.+|+.+|.+
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  290 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGIS  290 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            5778899999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |..+|++++|+..|+++++++|+.
T Consensus       291 ~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          291 CINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHCCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999984

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.55  E-value=5.4e-14  Score=119.12  Aligned_cols=103  Identities=17%  Similarity=0.092  Sum_probs=98.6

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      +..+...|..+++.|+|++|+..|+++++.+|. ++.+|+++|.++..+|++++|+..|++++.++|+++.+|+.+|.+|
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY  143 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            445778899999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          226 FSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ..+|++++|+..|+++++++|++.
T Consensus       144 ~~~g~~~~A~~~~~~al~~~p~~~  167 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQNPKYK  167 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCHHHH
T ss_pred             HccccHHHHHHHHHHHHHhCccch
Confidence            999999999999999999999853

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.55  E-value=4.4e-14  Score=127.39  Aligned_cols=105  Identities=10%  Similarity=-0.015  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      +..+..+...|..+...|++++|+.+|+++++++|+ +..+++++|.+|..+|++++|+..++++++++|+++.+++.+|
T Consensus        54 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  132 (568)
T 2vsy_A           54 PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL  132 (568)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            344556666666666666666666666666666665 6666666666666666666666666666666666666666666


Q ss_pred             HHHHhC---CCHHHHHHHHHHHHhhhhhc
Q 025537          223 ACLFSL---GMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       223 ~~~~~~---~~~~~A~~~~~~al~l~P~~  248 (251)
                      .++..+   |++++|...|+++++++|++
T Consensus       133 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          133 NWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            666666   66666666666666666654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.55  E-value=5.8e-14  Score=117.56  Aligned_cols=101  Identities=18%  Similarity=0.257  Sum_probs=98.6

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      +++.+...|..++..|+|++|+..|+++++.+|. ++.+++++|.+++.+|++++|+..++++++++|+++.+++.+|.+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            4678899999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhh
Q 025537          225 LFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      +...|++++|+..|+++++++|
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCC
T ss_pred             HHHcCChHHHHHHHHHHHhcCC
Confidence            9999999999999999999999

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.55  E-value=1.4e-13  Score=104.31  Aligned_cols=106  Identities=13%  Similarity=0.070  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      +..+..+...|..++..|++++|+..|.++++.+|. +..++..+|.++..+|++++|+..+++++...|+++.+++.+|
T Consensus        73 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  151 (186)
T 3as5_A           73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA  151 (186)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            344677889999999999999999999999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          223 ACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .++..+|++++|...|+++++++|++.
T Consensus       152 ~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          152 FSYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence            999999999999999999999999864

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.55  E-value=4.8e-14  Score=112.28  Aligned_cols=103  Identities=10%  Similarity=0.050  Sum_probs=95.2

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH---HHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT---ALY  219 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  219 (251)
                      +..++.+|..++..|+|++|+..|+++++..|. +   ..+++++|.+|+.+|+|++|+..|+++++.+|+++.   +++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            567889999999999999999999999999886 4   478999999999999999999999999999999875   899


Q ss_pred             HHHHHHHh------------------CCCHHHHHHHHHHHHhhhhhcc
Q 025537          220 LQAACLFS------------------LGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       220 ~~g~~~~~------------------~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .+|.++..                  .|++++|+..|+++++.+|++.
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence            99999986                  6799999999999999999864

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.55  E-value=1.2e-13  Score=99.11  Aligned_cols=101  Identities=17%  Similarity=0.225  Sum_probs=96.3

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  226 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  226 (251)
                      ..+...|..++..|++++|+..|.++++.+|. +..++.++|.++...|++++|+..+++++...|+++.+++.+|.++.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            45678899999999999999999999999998 89999999999999999999999999999999999999999999999


Q ss_pred             hCCCHHHHHHHHHHHHhhhhhc
Q 025537          227 SLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       227 ~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ..|++++|+..|+++++++|++
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~~  102 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPRS  102 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999864

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.54  E-value=2.6e-14  Score=98.62  Aligned_cols=91  Identities=16%  Similarity=0.120  Sum_probs=85.6

Q ss_pred             HHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhC
Q 025537          150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT-VYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSL  228 (251)
Q Consensus       150 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~  228 (251)
                      .++|..++..|+|++|+..|+++++.+|. +.. +|+++|.+|..+|++++|+..|+++++++|+++.+++.        
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            57899999999999999999999999998 899 99999999999999999999999999999999998865        


Q ss_pred             CCHHHHHHHHHHHHhhhhhcc
Q 025537          229 GMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       229 ~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +.+.+|+..|++++.++|++.
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHHhccCcccc
Confidence            678999999999999999865

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.53  E-value=9e-14  Score=120.72  Aligned_cols=107  Identities=18%  Similarity=0.256  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 025537          141 SQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYL  220 (251)
Q Consensus       141 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  220 (251)
                      ..+..+..+...|..+++.|+|++|+..|+++++.+|. +..+|+++|.++..+|++++|+..++++++++|+++.+++.
T Consensus        21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   99 (450)
T 2y4t_A           21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ   99 (450)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            35667889999999999999999999999999999998 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          221 QAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       221 ~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +|.+|..+|++++|+..|+++++++|++
T Consensus       100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~  127 (450)
T 2y4t_A          100 RGHLLLKQGKLDEAEDDFKKVLKSNPSE  127 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999975

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.1e-13  Score=121.90  Aligned_cols=104  Identities=21%  Similarity=0.228  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      ...+..++.+|+.+++.|+|++|+..|+++++.+|  ++.+|.++|.+++.+|++++|+..++++++++|+++.+|+.+|
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~   80 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE--DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRA   80 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc--cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            35688999999999999999999999999999998  5899999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          223 ACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .++..+|++++|+..|+++++++|.+
T Consensus        81 ~~~~~~g~~~~A~~~~~~~~~~~~~~  106 (514)
T 2gw1_A           81 SANEGLGKFADAMFDLSVLSLNGDFN  106 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence            99999999999999999999999853

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.53  E-value=1.5e-14  Score=127.95  Aligned_cols=102  Identities=13%  Similarity=0.043  Sum_probs=90.2

Q ss_pred             HHHHHHHHhHHHhh---------cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRA---------KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN--------DMPQEALGDAMQAQ  208 (251)
Q Consensus       146 a~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~al  208 (251)
                      +..+...|..++..         |+|++|+..|+++++++|+ ++.+|+++|.+|..+        |++++|+..|++|+
T Consensus       170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al  248 (474)
T 4abn_A          170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAE  248 (474)
T ss_dssp             HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence            46778888888888         8899999999999999888 888899999999888        88999999999999


Q ss_pred             hhCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          209 VVSP---DWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       209 ~~~p---~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +++|   +++.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus       249 ~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  291 (474)
T 4abn_A          249 KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW  291 (474)
T ss_dssp             HHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            9999   889999999999999999999999999999988875

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.53  E-value=5.7e-14  Score=120.09  Aligned_cols=99  Identities=13%  Similarity=0.028  Sum_probs=49.0

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  227 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  227 (251)
                      .+...|..++..|++++|+..|.++++.+|+ +..++.++|.++..+|++++|+..|.+++..+|+++.+|+.+|.++..
T Consensus       103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  181 (388)
T 1w3b_A          103 GYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA  181 (388)
T ss_dssp             HHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444 444444444444445555555555555555555555555555555555


Q ss_pred             CCCHHHHHHHHHHHHhhhhh
Q 025537          228 LGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       228 ~~~~~~A~~~~~~al~l~P~  247 (251)
                      .|++++|+..|+++++++|+
T Consensus       182 ~g~~~~A~~~~~~al~~~p~  201 (388)
T 1w3b_A          182 QGEIWLAIHHFEKAVTLDPN  201 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT
T ss_pred             cCCHHHHHHHHHHHHhcCCC
Confidence            55555555555555555554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.52  E-value=4.8e-14  Score=107.90  Aligned_cols=106  Identities=13%  Similarity=-0.007  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCChHHHH
Q 025537          141 SQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYL-MNDMPQEALGDAMQAQVVSPDWPTALY  219 (251)
Q Consensus       141 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~  219 (251)
                      .+|..+..+...|..+...|++++|+..|+++++.+|  ++..+..++.+.+ ..+...+|+..++++++++|+++.+++
T Consensus        35 ~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~  112 (176)
T 2r5s_A           35 ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELAC  112 (176)
T ss_dssp             HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHH
Confidence            3777889999999999999999999999999999988  4555555554432 333445689999999999999999999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          220 LQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       220 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+|.++...|++++|+..|+++++++|+.
T Consensus       113 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A          113 ELAVQYNQVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999999875

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.52  E-value=1.5e-13  Score=116.06  Aligned_cols=103  Identities=16%  Similarity=0.216  Sum_probs=100.0

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      .+..+...|..++..|++++|+..|+++++.+|. ++.+|+++|.++..+|++++|+..|+++++++|+++.+++.+|.+
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  294 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS  294 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            4778889999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +..+|++++|+..|+++++++|++
T Consensus       295 ~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          295 CINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999986

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.52  E-value=3.1e-13  Score=102.45  Aligned_cols=103  Identities=12%  Similarity=0.063  Sum_probs=98.3

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      .+..+...|..++..|++++|+.+|.++++.+|. +..++.++|.++...|++++|+..+++++...|+++.+++.+|.+
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~  119 (186)
T 3as5_A           41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA  119 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Confidence            3567788999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +...|++++|+..|+++++++|++
T Consensus       120 ~~~~~~~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A          120 LDNLGRFDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHcCcHHHHHHHHHHHHhcCccc
Confidence            999999999999999999999864

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.52  E-value=6.1e-14  Score=124.36  Aligned_cols=106  Identities=25%  Similarity=0.295  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ....++.+..+|..+++.|+|++|+..|+++++.+|+ ++.+|.++|.+|..+|++++|+..|+++++++|+++.+++.+
T Consensus        21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   99 (537)
T 3fp2_A           21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRR   99 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            3456899999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |.++..+|++++|+..|+ ++.++|+..
T Consensus       100 a~~~~~~g~~~~A~~~~~-~~~~~~~~~  126 (537)
T 3fp2_A          100 ASANESLGNFTDAMFDLS-VLSLNGDFD  126 (537)
T ss_dssp             HHHHHHHTCHHHHHHHHH-HHC------
T ss_pred             HHHHHHcCCHHHHHHHHH-HHhcCCCCC
Confidence            999999999999999995 999888753

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.51  E-value=1.2e-13  Score=109.88  Aligned_cols=105  Identities=11%  Similarity=0.058  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      .....+...|..++..|++++|+..|.++++.+|. +..++.++|.++...|++++|+..+++++..+|+++.+++.+|.
T Consensus       123 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  201 (243)
T 2q7f_A          123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGV  201 (243)
T ss_dssp             CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            34667889999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          224 CLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ++..+|++++|+..|+++++++|++.
T Consensus       202 ~~~~~~~~~~A~~~~~~~~~~~p~~~  227 (243)
T 2q7f_A          202 TYAYKENREKALEMLDKAIDIQPDHM  227 (243)
T ss_dssp             HHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred             HHHHccCHHHHHHHHHHHHccCcchH
Confidence            99999999999999999999999863

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.51  E-value=2e-13  Score=116.63  Aligned_cols=99  Identities=15%  Similarity=0.070  Sum_probs=47.8

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  227 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  227 (251)
                      .+...|..+.+.|++++|+..|+++++.+|. +..+|.++|.++...|++++|+..++++++++|+++.+++.+|.++..
T Consensus       273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  351 (388)
T 1w3b_A          273 AYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ  351 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444 444444444444444444444444444444444444444444444444


Q ss_pred             CCCHHHHHHHHHHHHhhhhh
Q 025537          228 LGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       228 ~~~~~~A~~~~~~al~l~P~  247 (251)
                      .|++++|+..|+++++++|+
T Consensus       352 ~g~~~~A~~~~~~a~~~~p~  371 (388)
T 1w3b_A          352 QGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             TTCCHHHHHHHHHHHTTCTT
T ss_pred             cCCHHHHHHHHHHHHhhCCC
Confidence            44444444444444444443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.51  E-value=8.3e-14  Score=123.23  Aligned_cols=103  Identities=10%  Similarity=0.111  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCC
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN---------DMPQEALGDAMQAQVVSP  212 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p  212 (251)
                      .+..+..+...|..++..|+|++|+.+|+++++++|+  ..++.++|.++..+         |++++|+..|++|++++|
T Consensus       133 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  210 (474)
T 4abn_A          133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV  210 (474)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC
Confidence            5566889999999999999999999999999999986  69999999999999         999999999999999999


Q ss_pred             CChHHHHHHHHHHHhC--------CCHHHHHHHHHHHHhhhh
Q 025537          213 DWPTALYLQAACLFSL--------GMENDARETLKDGTNLEA  246 (251)
Q Consensus       213 ~~~~~~~~~g~~~~~~--------~~~~~A~~~~~~al~l~P  246 (251)
                      +++.+|+.+|.+|..+        |++++|+.+|+++++++|
T Consensus       211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  252 (474)
T 4abn_A          211 LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR  252 (474)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred             CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence            9999999999999999        999999999999999999

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.50  E-value=2.9e-13  Score=114.31  Aligned_cols=103  Identities=15%  Similarity=0.115  Sum_probs=98.2

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      +..+...|..++..|+|++|+..|+++++.+|. +..+|.++|.++..+|++++|+..++++++++|+++.+++.+|.++
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  142 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF  142 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            345668899999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          226 FSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ..+|++++|+..|+++++++|++.
T Consensus       143 ~~~g~~~~A~~~~~~~~~~~~~~~  166 (368)
T 1fch_A          143 TNESLQRQACEILRDWLRYTPAYA  166 (368)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCcH
Confidence            999999999999999999999754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.50  E-value=2e-13  Score=112.93  Aligned_cols=104  Identities=11%  Similarity=0.038  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHH----------------------
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEAL----------------------  201 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~----------------------  201 (251)
                      ...+.+...|..+...|++++|+..|+++++.+|+ ++.+++++|.++..+|++++|+                      
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            34567778888888888888888888888888888 8888888888888888888765                      


Q ss_pred             ------------HHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          202 ------------GDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       202 ------------~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                                  ..+++++..+|+++.+++.+|.++...|++++|+..|+++++++|++
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence                        44566688899999999999999999999999999999999999986

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.50  E-value=1.4e-13  Score=95.58  Aligned_cols=74  Identities=18%  Similarity=0.162  Sum_probs=66.0

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          175 GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       175 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .+|+ ++.+|+++|.+|+.+|+|++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|++.
T Consensus         2 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A            2 EDPE-DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             ---C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             CCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            3677 8999999999999999999999999999999999999999999999999999999999999999988754

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.50  E-value=2.9e-13  Score=108.27  Aligned_cols=102  Identities=12%  Similarity=0.062  Sum_probs=93.8

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHc--------------------------cCCCCCHHHHHHHHHHHHhcCCHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFID--------------------------GGTMVSPTVYARRCLSYLMNDMPQE  199 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~~~a~~~~~~~~~~~  199 (251)
                      +..+...|..+...|++++|+..|.++++                          .+|. ++.++.++|.++...|++++
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  157 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPN  157 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHH
Confidence            67777888888888888888888888887                          6776 78899999999999999999


Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          200 ALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       200 A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus       158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  206 (258)
T 3uq3_A          158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF  206 (258)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence            9999999999999999999999999999999999999999999999975

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.49  E-value=2e-13  Score=110.69  Aligned_cols=103  Identities=14%  Similarity=0.059  Sum_probs=96.1

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhhCCCCh
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLM--------NDMPQEALGDAMQAQVVSPDWP  215 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~--------~~~~~~A~~~~~~al~~~p~~~  215 (251)
                      +..++..|..++..|+|++|+..|+++++..|+.  ...+++++|.+++.        +|++++|+..|+++++.+|+++
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            7789999999999999999999999999998841  46789999999999        9999999999999999999987


Q ss_pred             HHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          216 TAL-----------------YLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       216 ~~~-----------------~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .++                 +.+|.+|..+|+|++|+..|+++++.+|++
T Consensus       132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  181 (261)
T 3qky_A          132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT  181 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence            766                 899999999999999999999999999974

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.49  E-value=3.7e-14  Score=105.84  Aligned_cols=84  Identities=8%  Similarity=-0.046  Sum_probs=79.6

Q ss_pred             HHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537          165 AIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       165 A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l  244 (251)
                      +-..|.++++++|. +..+++++|.+++..|+|++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|++++++
T Consensus         6 ~~~~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            6 GGGTIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             CCCSHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            33568899999998 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcc
Q 025537          245 EAKKN  249 (251)
Q Consensus       245 ~P~~~  249 (251)
                      +|++.
T Consensus        85 ~p~~~   89 (148)
T 2vgx_A           85 DIXEP   89 (148)
T ss_dssp             STTCT
T ss_pred             CCCCc
Confidence            99863

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.49  E-value=6.6e-13  Score=105.47  Aligned_cols=105  Identities=14%  Similarity=0.140  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      +..+..+...|..++..|++++|+..|+++++.+|. +..++.++|.++..+|++++|+..+++++..+|+++.+++.+|
T Consensus        88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  166 (243)
T 2q7f_A           88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG  166 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence            344667777788888888888888888888888876 7778888888888888888888888888888888888888888


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          223 ACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .++...|++++|+..|+++++++|++
T Consensus       167 ~~~~~~~~~~~A~~~~~~~~~~~~~~  192 (243)
T 2q7f_A          167 MCLANEGMLDEALSQFAAVTEQDPGH  192 (243)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            88888888888888888888877754

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.49  E-value=5.6e-13  Score=89.85  Aligned_cols=84  Identities=14%  Similarity=0.142  Sum_probs=79.5

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      .+..+...|..++..|+|++|+.+|.++++.+|. +..+++++|.++..+|++++|+..+++++.++|+++.+++.+|.+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            4677889999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHhCC
Q 025537          225 LFSLG  229 (251)
Q Consensus       225 ~~~~~  229 (251)
                      +..+|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            88764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.48  E-value=1.4e-13  Score=111.58  Aligned_cols=107  Identities=6%  Similarity=-0.034  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG--TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY  219 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  219 (251)
                      .+..+..+...|..++..|+|++|+..|.++++..  |.....+|.++|.++..+|++++|+..++++++++|+++.+|+
T Consensus        33 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  112 (272)
T 3u4t_A           33 KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG  112 (272)
T ss_dssp             TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHH
Confidence            44556789999999999999999999999999932  2223556999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          220 LQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       220 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+|.++..+|++++|+..|+++++++|++
T Consensus       113 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~  141 (272)
T 3u4t_A          113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTD  141 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence            99999999999999999999999998875

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.48  E-value=2.2e-13  Score=110.32  Aligned_cols=100  Identities=14%  Similarity=0.085  Sum_probs=55.7

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      .+..+...|..++..|+|++|+.+|+++++.+|. +..+|+++|...+..+++++|+..++++++++|+++.+++.+|.+
T Consensus       107 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  185 (272)
T 3u4t_A          107 RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARA  185 (272)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            3445555555555555555555555555555555 555555555222223355555555555555555555555555555


Q ss_pred             HHhCCC---HHHHHHHHHHHHhhh
Q 025537          225 LFSLGM---ENDARETLKDGTNLE  245 (251)
Q Consensus       225 ~~~~~~---~~~A~~~~~~al~l~  245 (251)
                      +..+|+   +++|+..|++++++.
T Consensus       186 ~~~~~~~~~~~~A~~~~~~a~~~~  209 (272)
T 3u4t_A          186 NAAQDPDTKQGLAKPYYEKLIEVC  209 (272)
T ss_dssp             HHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred             HHHcCcchhhHHHHHHHHHHHHHH
Confidence            555555   555555555555554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.48  E-value=6.1e-13  Score=104.16  Aligned_cols=106  Identities=14%  Similarity=0.003  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh--hCCCChHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN-DMPQEALGDAMQAQV--VSPDWPTAL  218 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~  218 (251)
                      .+..+..+...|..++..|++++|+..|.++++.+|. +..++.++|.++... |++++|+..+++++.  .+|..+.++
T Consensus        38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  116 (225)
T 2vq2_A           38 DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN  116 (225)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHH
T ss_pred             CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHH
Confidence            3455778889999999999999999999999999998 899999999999999 999999999999999  667778999


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          219 YLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       219 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +.+|.++...|++++|+..|+++++++|++
T Consensus       117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  146 (225)
T 2vq2_A          117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQF  146 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999998874

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.48  E-value=2.6e-13  Score=122.36  Aligned_cols=106  Identities=15%  Similarity=0.045  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+...|..++..|+|++|+..|+++++++|+ +..+|+++|.+|..+|++++|+..++++++++|+++.+++.+
T Consensus        19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   97 (568)
T 2vsy_A           19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL   97 (568)
T ss_dssp             --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            4455778899999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |.+|..+|++++|+..|+++++++|++
T Consensus        98 a~~~~~~g~~~~A~~~~~~al~~~p~~  124 (568)
T 2vsy_A           98 GHALEDAGQAEAAAAAYTRAHQLLPEE  124 (568)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999975

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.48  E-value=1.1e-12  Score=109.69  Aligned_cols=102  Identities=15%  Similarity=0.190  Sum_probs=94.6

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP----TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      ......|..++..|++++|+..|+++++..|+ +.    .++.++|.++..+|++++|+..++++++++|+++.+++.+|
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  313 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA  313 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            34556799999999999999999999999997 66    45778999999999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          223 ACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .++..+|++++|+..|+++++++|++.
T Consensus       314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~  340 (359)
T 3ieg_A          314 EAYLIEEMYDEAIQDYEAAQEHNENDQ  340 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            999999999999999999999999863

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.47  E-value=3.7e-13  Score=107.88  Aligned_cols=101  Identities=10%  Similarity=0.026  Sum_probs=51.7

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV--VSPDWPTALYLQAA  223 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~g~  223 (251)
                      +..+...|..++..|++++|+..|.++++.+|. +..++.++|.++..+|++++|+..+++++.  ..|.++.+++.+|.
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~  149 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL  149 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence            444445555555555555555555555555554 445555555555555555555555555555  44444555555555


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          224 CLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ++...|++++|+..|+++++++|+
T Consensus       150 ~~~~~g~~~~A~~~~~~~~~~~~~  173 (252)
T 2ho1_A          150 VSLQMKKPAQAKEYFEKSLRLNRN  173 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCcc
Confidence            555555555555555555554443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.47  E-value=4e-13  Score=111.43  Aligned_cols=92  Identities=12%  Similarity=0.062  Sum_probs=86.3

Q ss_pred             HHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHH-H
Q 025537          156 AFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMEND-A  234 (251)
Q Consensus       156 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~-A  234 (251)
                      +...|++++|+..|+++++.+|+ ++.+|+++|.++.++|++++|+..+++|+.++|+++.+++++|.++..+|++++ +
T Consensus       176 ~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa  254 (291)
T 3mkr_A          176 AAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT  254 (291)
T ss_dssp             HHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence            34458999999999999999998 999999999999999999999999999999999999999999999999999987 5


Q ss_pred             HHHHHHHHhhhhhc
Q 025537          235 RETLKDGTNLEAKK  248 (251)
Q Consensus       235 ~~~~~~al~l~P~~  248 (251)
                      ..+++++++++|++
T Consensus       255 ~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          255 NRYLSQLKDAHRSH  268 (291)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhCCCC
Confidence            68889999999986

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.47  E-value=5.1e-13  Score=113.03  Aligned_cols=99  Identities=13%  Similarity=0.056  Sum_probs=93.6

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      +..+.+.|..+++.|+|++|+.+|+++++++|. +..+|+++|.+|+.+|++++|+.+|++|++++|+++.+++.+|.++
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~  274 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  274 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            689999999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHH-HHHHHHHHhhh
Q 025537          226 FSLGMENDA-RETLKDGTNLE  245 (251)
Q Consensus       226 ~~~~~~~~A-~~~~~~al~l~  245 (251)
                      ..+|++++| ...|++.+..-
T Consensus       275 ~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          275 QRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999 55777776543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.46  E-value=7e-13  Score=103.83  Aligned_cols=105  Identities=10%  Similarity=-0.024  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHhHHHhh-cCHHHHHHHHHHHHc--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Q 025537          143 MQETLNSKKHGDTAFRA-KDFSTAIDCYTQFID--GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY  219 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  219 (251)
                      +..+..+...|..++.. |++++|+..|+++++  ..|. +..++.++|.++..+|++++|+..++++++.+|+++.+++
T Consensus        73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  151 (225)
T 2vq2_A           73 PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPT-PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK  151 (225)
T ss_dssp             TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH
Confidence            34567888999999999 999999999999999  6665 7899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhhhh-hc
Q 025537          220 LQAACLFSLGMENDARETLKDGTNLEA-KK  248 (251)
Q Consensus       220 ~~g~~~~~~~~~~~A~~~~~~al~l~P-~~  248 (251)
                      .+|.++..+|++++|+..|+++++++| ++
T Consensus       152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  181 (225)
T 2vq2_A          152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQ  181 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999 54

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.46  E-value=2.8e-13  Score=112.12  Aligned_cols=105  Identities=14%  Similarity=0.068  Sum_probs=91.0

Q ss_pred             HHHHHHHHHhHHHhh-cCHHHHHHHHHHHHccCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH--
Q 025537          145 ETLNSKKHGDTAFRA-KDFSTAIDCYTQFIDGGTMVS-----PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT--  216 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--  216 (251)
                      .+..+.+.|..+... |++++|+.+|++|+++.|...     ..++.++|.++..+|+|++|+..|++++++.|++..  
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  195 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence            367889999999996 999999999999999977411     567999999999999999999999999999998653  


Q ss_pred             -----HHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          217 -----ALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       217 -----~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                           +|+++|.++..+|++++|+.+|+++++++|+..
T Consensus       196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  233 (292)
T 1qqe_A          196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA  233 (292)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence                 689999999999999999999999999999753

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.46  E-value=1.2e-12  Score=108.22  Aligned_cols=104  Identities=13%  Similarity=0.132  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      +..+..+...|..++..|++++|+..|.++++.+|. +..++.++|.++...|++++|+..++++++.+|+++.+++.+|
T Consensus       169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  247 (327)
T 3cv0_A          169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA  247 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            335678889999999999999999999999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          223 ACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      .++..+|++++|+..|+++++++|+
T Consensus       248 ~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          248 VSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCc
Confidence            9999999999999999999999998

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.46  E-value=9.6e-13  Score=105.45  Aligned_cols=103  Identities=10%  Similarity=-0.097  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      .+..+...|..++..|++++|+.+|.++++.+|. +..++..+|.++..+|++++|+..++++++..|+++.+++.++.+
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  218 (252)
T 2ho1_A          140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRL  218 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            3445555555555555555555555555555555 555555555555555555555555555555555555555555555


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +...|++++|...|+++++++|++
T Consensus       219 ~~~~g~~~~A~~~~~~~~~~~p~~  242 (252)
T 2ho1_A          219 AKVFEDRDTAASYGLQLKRLYPGS  242 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHccCHHHHHHHHHHHHHHCCCC
Confidence            555555555555555555555543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.46  E-value=6.9e-13  Score=99.24  Aligned_cols=105  Identities=14%  Similarity=0.011  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+...|..++..|+|++|+..|.++++.+|. ++.+|+++|.++..+|++++|+..+++++.++|++..++..+
T Consensus        43 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  121 (166)
T 1a17_A           43 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY  121 (166)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4455788999999999999999999999999999998 999999999999999999999999999999999999988555


Q ss_pred             H--HHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          222 A--ACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       222 g--~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      +  ..+...|++++|+..+.++..+.+.
T Consensus       122 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~  149 (166)
T 1a17_A          122 QECNKIVKQKAFERAIAGDEHKRSVVDS  149 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence            4  4488999999999999999877654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.45  E-value=8e-13  Score=106.94  Aligned_cols=106  Identities=13%  Similarity=0.095  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP------  215 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------  215 (251)
                      .+..+..+...|..++..|+|++|+.+|.++++.+|. +..++.++|.++..+|++++|+..++++++++|+++      
T Consensus        73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  151 (275)
T 1xnf_A           73 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL  151 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            3445778899999999999999999999999999998 899999999999999999999999999999999875      


Q ss_pred             ----------------------------------------------------------------HHHHHHHHHHHhCCCH
Q 025537          216 ----------------------------------------------------------------TALYLQAACLFSLGME  231 (251)
Q Consensus       216 ----------------------------------------------------------------~~~~~~g~~~~~~~~~  231 (251)
                                                                                      .+++.+|.++..+|++
T Consensus       152 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  231 (275)
T 1xnf_A          152 YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL  231 (275)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH
Confidence                                                                            5567777777777777


Q ss_pred             HHHHHHHHHHHhhhhhc
Q 025537          232 NDARETLKDGTNLEAKK  248 (251)
Q Consensus       232 ~~A~~~~~~al~l~P~~  248 (251)
                      ++|+..|+++++++|++
T Consensus       232 ~~A~~~~~~al~~~p~~  248 (275)
T 1xnf_A          232 DSATALFKLAVANNVHN  248 (275)
T ss_dssp             HHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHhCCchh
Confidence            77777777777777754

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.45  E-value=1.5e-12  Score=107.80  Aligned_cols=103  Identities=12%  Similarity=0.038  Sum_probs=98.1

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      +..+..+|..++..|+|++|+..|+++++.+|. +..++..+|.++...|++++|+..++++++++|+++.+++.+|.++
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   99 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   99 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence            345678899999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          226 FSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ...|++++|+..|+++++++|++.
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~~~~  123 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQPQYE  123 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccH
Confidence            999999999999999999999864

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.45  E-value=6.1e-13  Score=96.52  Aligned_cols=70  Identities=10%  Similarity=-0.064  Sum_probs=67.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .+.++.++|.++++.|+|++|+..|++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++.
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~   76 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR   76 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence            5678999999999999999999999999999999999999999999999999999999999999999864

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.44  E-value=9.2e-13  Score=109.15  Aligned_cols=102  Identities=14%  Similarity=-0.015  Sum_probs=68.7

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      .+..+...|..++..|++++|+..|.++++..|. +...+..+|.++..+|++++|+..++++++.+|+++.+++.+|.+
T Consensus       124 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~  202 (330)
T 3hym_B          124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV  202 (330)
T ss_dssp             CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            3455666666666666666666666666666665 666666666666666666666666666666666666666666666


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhh
Q 025537          225 LFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      +...|++++|+..|++++++.|.
T Consensus       203 ~~~~~~~~~A~~~~~~a~~~~~~  225 (330)
T 3hym_B          203 AFQNGEWKTAEKWFLDALEKIKA  225 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHcccHHHHHHHHHHHHHHhhh
Confidence            66666666666666666666654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.44  E-value=5.3e-13  Score=110.61  Aligned_cols=106  Identities=14%  Similarity=0.071  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG---------TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD  213 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  213 (251)
                      +..+..+...|..++..|++++|+..|+++++..         |. ...++.++|.++..+|++++|+..++++++++|+
T Consensus       190 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK-WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTT-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            3456788899999999999999999999999885         44 6789999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          214 WPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       214 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ++.+++.+|.++..+|++++|+..|+++++++|++.
T Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  304 (330)
T 3hym_B          269 NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT  304 (330)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence            999999999999999999999999999999999753

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.44  E-value=8.3e-14  Score=106.27  Aligned_cols=95  Identities=11%  Similarity=0.062  Sum_probs=85.4

Q ss_pred             HhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHhCCCH
Q 025537          153 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC-LFSLGME  231 (251)
Q Consensus       153 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~-~~~~~~~  231 (251)
                      +..++..|+|++|+..|.++++.+|. ++.+|+.+|.+|...|++++|+..|++++.++|+++.+++.+|.+ +...|++
T Consensus        17 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~   95 (177)
T 2e2e_A           17 LHQFASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH   95 (177)
T ss_dssp             TCCCC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred             hhhhhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc
Confidence            34456779999999999999999998 999999999999999999999999999999999999999999999 8899999


Q ss_pred             --HHHHHHHHHHHhhhhhc
Q 025537          232 --NDARETLKDGTNLEAKK  248 (251)
Q Consensus       232 --~~A~~~~~~al~l~P~~  248 (251)
                        ++|+..|+++++++|++
T Consensus        96 ~~~~A~~~~~~al~~~p~~  114 (177)
T 2e2e_A           96 MTAQTRAMIDKALALDSNE  114 (177)
T ss_dssp             CCHHHHHHHHHHHHHCTTC
T ss_pred             chHHHHHHHHHHHHhCCCc
Confidence              99999999999999975

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.43  E-value=2.7e-12  Score=113.71  Aligned_cols=107  Identities=13%  Similarity=0.055  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+...|..++..|+|++|+..|+++++.+|. +..+|.++|.++..+|++++|+..++++++.+|+++.+++.+
T Consensus       306 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  384 (537)
T 3fp2_A          306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF  384 (537)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            3445778889999999999999999999999999998 889999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |.++...|++++|+..|+++++++|++.
T Consensus       385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~  412 (537)
T 3fp2_A          385 AEILTDRGDFDTAIKQYDIAKRLEEVQE  412 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence            9999999999999999999999998764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.43  E-value=2.3e-12  Score=111.73  Aligned_cols=100  Identities=15%  Similarity=0.202  Sum_probs=94.0

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP----TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      .+...|..++..|++++|+..|+++++.+|. ++    .+|.++|.++.++|++++|+..+++++.++|+++.+|+.+|.
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~  337 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE  337 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            3455699999999999999999999999997 64    488999999999999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          224 CLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       224 ~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ++..+|++++|+..|+++++++|++
T Consensus       338 ~~~~~~~~~~A~~~~~~al~~~p~~  362 (450)
T 2y4t_A          338 AYLIEEMYDEAIQDYETAQEHNEND  362 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCcch
Confidence            9999999999999999999999985

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.43  E-value=1.1e-13  Score=122.51  Aligned_cols=107  Identities=16%  Similarity=0.085  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+...|..+++.|+|++|+.+|++|++++|+ ++.+|+++|.+|..+|++++|+..+++|++++|+++.+++.+
T Consensus        36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  114 (477)
T 1wao_1           36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY  114 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4556888999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHH--HHhCCCHHHHHHHHH-----------HHHhhhhhcc
Q 025537          222 AAC--LFSLGMENDARETLK-----------DGTNLEAKKN  249 (251)
Q Consensus       222 g~~--~~~~~~~~~A~~~~~-----------~al~l~P~~~  249 (251)
                      +.+  +...|++++|+..|+           ++++++|+..
T Consensus       115 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~  155 (477)
T 1wao_1          115 QECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS  155 (477)
T ss_dssp             HHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred             HHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence            999  899999999999999           8888888754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.43  E-value=6.6e-13  Score=109.89  Aligned_cols=106  Identities=8%  Similarity=-0.179  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC-----CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCC---
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-----SPTVYARRCLSYLMN-DMPQEALGDAMQAQVVSPDW---  214 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~---  214 (251)
                      ..+..+.+.|..+...|+|++|+.+|++|+++.|..     .+.++.++|.+|... |++++|+..|++|+++.|..   
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            347889999999999999999999999999987631     156899999999995 99999999999999998865   


Q ss_pred             ---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          215 ---PTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       215 ---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                         ..++.++|.++..+|+|++|+..|++++++.|++.
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  192 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence               57899999999999999999999999999998753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.42  E-value=9.1e-13  Score=104.80  Aligned_cols=102  Identities=14%  Similarity=0.044  Sum_probs=92.8

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH---HHHHHHHHHHHh------------------cCCHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP---TVYARRCLSYLM------------------NDMPQEALGDA  204 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~a~~~~~------------------~~~~~~A~~~~  204 (251)
                      ...+...|..+++.|+|++|+..|+++++..|+ +.   .+++.+|.++..                  +|++++|+..|
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  119 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF  119 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence            567889999999999999999999999999997 54   478999999886                  57899999999


Q ss_pred             HHHHhhCCCChHHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          205 MQAQVVSPDWPTAL-----------------YLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       205 ~~al~~~p~~~~~~-----------------~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +++++.+|+++.++                 +.+|.+|...|++++|+..|+++++..|++
T Consensus       120 ~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~  180 (225)
T 2yhc_A          120 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT  180 (225)
T ss_dssp             HHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC
Confidence            99999999998665                 678999999999999999999999999975

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.41  E-value=3.9e-13  Score=99.22  Aligned_cols=82  Identities=10%  Similarity=-0.029  Sum_probs=75.5

Q ss_pred             HHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          167 DCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       167 ~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      ..|.++++.+|+ +...++++|.+++..|+|++|+..|++++.++|+++.+|+.+|.++..+|+|++|+.+|+++++++|
T Consensus         5 ~~l~~al~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A            5 GTLAMLRGLSED-TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             ----CCTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHcCCHH-HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            467888999998 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcc
Q 025537          247 KKN  249 (251)
Q Consensus       247 ~~~  249 (251)
                      ++.
T Consensus        84 ~~~   86 (142)
T 2xcb_A           84 NEP   86 (142)
T ss_dssp             TCT
T ss_pred             CCc
Confidence            863

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.39  E-value=8.7e-13  Score=111.68  Aligned_cols=102  Identities=15%  Similarity=0.021  Sum_probs=60.3

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-H
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC-L  225 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~-~  225 (251)
                      ..+.+.|..+++.|+|++|+.+|+++++++|+ +..+|+++|.+|+.+|+|++|+.+|++|++++|+++.++..++.+ .
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE  309 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            37889999999999999999999999999998 999999999999999999999999999999999999999999998 5


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          226 FSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ...+..+++...|.+++.++|++.
T Consensus       310 ~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          310 QEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCC
Confidence            566788899999999999999864

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.38  E-value=6e-12  Score=104.29  Aligned_cols=105  Identities=11%  Similarity=-0.026  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRC--LSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ...+.+...|..+.+.|++++|+..|+++++.+|+ +.......+  ..+...|++++|+..|+++++.+|+++.+|+.+
T Consensus       128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l  206 (291)
T 3mkr_A          128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ  206 (291)
T ss_dssp             CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            34667889999999999999999999999999997 653333223  333345899999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |.++..+|++++|+..|+++++++|++.
T Consensus       207 a~~~~~~g~~~eA~~~l~~al~~~p~~~  234 (291)
T 3mkr_A          207 AACHMAQGRWEAAEGVLQEALDKDSGHP  234 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999863

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.37  E-value=3.2e-12  Score=103.26  Aligned_cols=105  Identities=11%  Similarity=-0.004  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG--------GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV----  210 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----  210 (251)
                      +..+..+...|..++..|+|++|+.+|.++++.        +|. ...++.++|.++..+|++++|+..+++++.+    
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  160 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD-VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR  160 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            566888999999999999999999999999988        455 7889999999999999999999999999999    


Q ss_pred             ----CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          211 ----SPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       211 ----~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                          .|....+++.+|.++..+|++++|+..|++++++.|+.
T Consensus       161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (283)
T 3edt_B          161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK  202 (283)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence                78888999999999999999999999999999987753

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.37  E-value=4.1e-12  Score=111.05  Aligned_cols=102  Identities=12%  Similarity=0.000  Sum_probs=59.0

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccC--------CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCh
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG--------TMVSPTVYARRCLSYLMND--MPQEALGDAMQAQVVSPDWP  215 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~  215 (251)
                      +..+.+.|..++..|+|++|+.+|++++++.        +. .+.++.++|.++..+|  +|++|+..|++|++++|+++
T Consensus        94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~  172 (472)
T 4g1t_A           94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE-SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP  172 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh-hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence            3445566666666666666666666665542        12 3455666655555433  46666666666666666666


Q ss_pred             HHHHHHHHHHH---hCCCHHHHHHHHHHHHhhhhhc
Q 025537          216 TALYLQAACLF---SLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       216 ~~~~~~g~~~~---~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+++.+|.+++   ..+++++|+..|+++++++|++
T Consensus       173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~  208 (472)
T 4g1t_A          173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN  208 (472)
T ss_dssp             HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence            66666665533   3455566666666666666654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.35  E-value=6.3e-12  Score=89.46  Aligned_cols=89  Identities=9%  Similarity=-0.081  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ++..+..+...|..++..|+|++|+..|+++++.+|+ ++.+++++|.++..+|++++|+..+++++...|+++......
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  101 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK  101 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            4677889999999999999999999999999999998 999999999999999999999999999999999999876554


Q ss_pred             HHHHHhCCCH
Q 025537          222 AACLFSLGME  231 (251)
Q Consensus       222 g~~~~~~~~~  231 (251)
                      ..+....+.+
T Consensus       102 ~ai~~~~~~l  111 (117)
T 3k9i_A          102 QAILFYADKL  111 (117)
T ss_dssp             HHHHHHTTCT
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.35  E-value=9.6e-12  Score=111.79  Aligned_cols=105  Identities=16%  Similarity=0.116  Sum_probs=94.4

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG------GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL  218 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  218 (251)
                      ++..+...|..+++.|++++|+..|+++++.      +|+....+|.+++.++...|++++|+..++++++++|+++.+|
T Consensus       474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  553 (597)
T 2xpi_A          474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH  553 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence            3567888999999999999999999999987      5541278999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          219 YLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       219 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +.+|.+|...|++++|...|+++++++|++.
T Consensus       554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~  584 (597)
T 2xpi_A          554 TAIALVYLHKKIPGLAITHLHESLAISPNEI  584 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence            9999999999999999999999999999863

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.34  E-value=5e-12  Score=102.11  Aligned_cols=101  Identities=10%  Similarity=-0.027  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG--------GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV----  210 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----  210 (251)
                      +..+..+...|..++..|+|++|+.+|.+++++        +|. ...++.++|.+|..+|++++|+..+.+++.+    
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA-VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  118 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999987        344 6789999999999999999999999999998    


Q ss_pred             ----CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537          211 ----SPDWPTALYLQAACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       211 ----~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l  244 (251)
                          +|....+++.+|.++..+|++++|+..|++++++
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                5778999999999999999999999999999998

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.34  E-value=4.8e-12  Score=111.27  Aligned_cols=105  Identities=12%  Similarity=0.020  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH------HHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCC
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT------VYARRCLSYLM---NDMPQEALGDAMQAQVVSPDW  214 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~  214 (251)
                      .....+...|..++..|++++|+..|.++++.+|. +..      +|.++|.++..   +|++++|+..+++++.++|++
T Consensus       370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  448 (514)
T 2gw1_A          370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK-LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS  448 (514)
T ss_dssp             TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence            34567888999999999999999999999999886 543      89999999999   999999999999999999999


Q ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          215 PTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +.+++.+|.++..+|++++|+..|+++++++|++.
T Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  483 (514)
T 2gw1_A          449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTME  483 (514)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence            99999999999999999999999999999999753

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.34  E-value=8.4e-12  Score=103.88  Aligned_cols=102  Identities=11%  Similarity=-0.031  Sum_probs=53.1

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT-VYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      .+..+...|..+...|++++|+..|+++++++|. ++. +|.++|.++.++|++++|+..|++|++.+|....+|...+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  176 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL  176 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            3444555555555555555555555555555554 443 55555555555555555555555555555555555444443


Q ss_pred             HHHh-CCCHHHHHHHHHHHHhhhhh
Q 025537          224 CLFS-LGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       224 ~~~~-~~~~~~A~~~~~~al~l~P~  247 (251)
                      .... .|++++|...|+++++++|+
T Consensus       177 ~~~~~~~~~~~A~~~~~~al~~~p~  201 (308)
T 2ond_A          177 MEYYCSKDKSVAFKIFELGLKKYGD  201 (308)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3222 45555555555555555554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.33  E-value=7.3e-12  Score=87.40  Aligned_cols=69  Identities=17%  Similarity=0.121  Sum_probs=67.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ++..|+++|.+++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            578899999999999999999999999999999999999999999999999999999999999999986

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.33  E-value=6.8e-12  Score=103.65  Aligned_cols=103  Identities=14%  Similarity=0.125  Sum_probs=89.9

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHcc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDG------GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-----  214 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----  214 (251)
                      +..+...|..++..|+|++|+.+|.++++.      ++.....+++|+|.+|..+|+|++|+..+++|+++.+..     
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~  234 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            557899999999999999999999999952      211145689999999999999999999999999987554     


Q ss_pred             -hHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhhhhc
Q 025537          215 -PTALYLQAACLFSLGM-ENDARETLKDGTNLEAKK  248 (251)
Q Consensus       215 -~~~~~~~g~~~~~~~~-~~~A~~~~~~al~l~P~~  248 (251)
                       +.+|+.+|.+|..+|+ +++|+.+|++|+++....
T Consensus       235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence             8899999999999994 799999999999887643

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.33  E-value=8.9e-12  Score=89.45  Aligned_cols=88  Identities=10%  Similarity=0.007  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+...|..++..|++++|+.+|+++++.+|. +..+++++|.++..+|++++|+..+++++.++|++..+++.+
T Consensus        46 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  124 (133)
T 2lni_A           46 NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY  124 (133)
T ss_dssp             CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            3445788999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCC
Q 025537          222 AACLFSLGM  230 (251)
Q Consensus       222 g~~~~~~~~  230 (251)
                      +.++..+|+
T Consensus       125 ~~~~~~~~~  133 (133)
T 2lni_A          125 QRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhcC
Confidence            999988764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.33  E-value=5.4e-12  Score=95.08  Aligned_cols=85  Identities=5%  Similarity=-0.148  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+...|..++..|+|++|+.+|+++++++|. +..+|+++|.+|..+|++++|+..|+++++++|+++.+|+.+
T Consensus        41 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  119 (164)
T 3sz7_A           41 APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR  119 (164)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            5566889999999999999999999999999999998 999999999999999999999999999999999999999888


Q ss_pred             HHHHHh
Q 025537          222 AACLFS  227 (251)
Q Consensus       222 g~~~~~  227 (251)
                      +.+...
T Consensus       120 ~l~~~~  125 (164)
T 3sz7_A          120 GLETTK  125 (164)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.32  E-value=7.8e-12  Score=110.08  Aligned_cols=91  Identities=14%  Similarity=0.154  Sum_probs=83.9

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      +..+.++|..+++.|+|++|+.+|+++|+++|+ +..+|+++|.+|+.+|+|++|+.+|++|++++|++..++..++.++
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~  395 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            688999999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHH
Q 025537          226 FSLGMENDARET  237 (251)
Q Consensus       226 ~~~~~~~~A~~~  237 (251)
                      ..++++++|...
T Consensus       396 ~~~~~~~~a~~~  407 (457)
T 1kt0_A          396 KKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.32  E-value=1.1e-11  Score=88.35  Aligned_cols=89  Identities=13%  Similarity=0.024  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+...|..++..|++++|+.+|.++++.+|. +..+++++|.++..+|++++|+..+++++.++|+++.+++.+
T Consensus        42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  120 (131)
T 2vyi_A           42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL  120 (131)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHH
Confidence            3445778899999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCH
Q 025537          222 AACLFSLGME  231 (251)
Q Consensus       222 g~~~~~~~~~  231 (251)
                      |.++..+|++
T Consensus       121 ~~~~~~~~~~  130 (131)
T 2vyi_A          121 KIAELKLREA  130 (131)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhcC
Confidence            9999999886

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.32  E-value=1.7e-11  Score=93.56  Aligned_cols=83  Identities=13%  Similarity=-0.016  Sum_probs=77.7

Q ss_pred             cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHhCCCHHHHHHH
Q 025537          160 KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW--PTALYLQAACLFSLGMENDARET  237 (251)
Q Consensus       160 ~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~~~~~~~~~~A~~~  237 (251)
                      ++..+|+..|+++++.+|+ ++.+++++|.++..+|++++|+..+.++++++|++  +.+++.+|.++..+|++++|+..
T Consensus        88 ~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             cccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            4455689999999999998 99999999999999999999999999999999987  66999999999999999999999


Q ss_pred             HHHHHh
Q 025537          238 LKDGTN  243 (251)
Q Consensus       238 ~~~al~  243 (251)
                      |+++|.
T Consensus       167 y~~al~  172 (176)
T 2r5s_A          167 YRRQLY  172 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999985

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.31  E-value=1.1e-11  Score=89.06  Aligned_cols=86  Identities=12%  Similarity=0.010  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCh
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS------PDWP  215 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~  215 (251)
                      .+..+..+...|..++..|+|++|+..|+++++++|+ +..+|+++|.++..+|++++|+..++++++++      |++.
T Consensus        34 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~  112 (126)
T 3upv_A           34 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR  112 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred             CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHH
Confidence            4566889999999999999999999999999999998 99999999999999999999999999999999      9999


Q ss_pred             HHHHHHHHHHHhC
Q 025537          216 TALYLQAACLFSL  228 (251)
Q Consensus       216 ~~~~~~g~~~~~~  228 (251)
                      .++..++.+...+
T Consensus       113 ~~~~~l~~~~~~l  125 (126)
T 3upv_A          113 EIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999988887654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.31  E-value=1.4e-11  Score=101.05  Aligned_cols=104  Identities=11%  Similarity=-0.038  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG--------GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV----  210 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----  210 (251)
                      +..+..+...|..++..|++++|+.+|+++++.        .|. ...++.++|.+|..+|++++|+..+++++.+    
T Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  228 (311)
T 3nf1_A          150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN-VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER  228 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            556788999999999999999999999999988        555 6788999999999999999999999999984    


Q ss_pred             ---------------------------------------------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537          211 ---------------------------------------------SPDWPTALYLQAACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       211 ---------------------------------------------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                                                                   .|..+.+++.+|.+|..+|++++|+..|++++++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence                                                         46778999999999999999999999999999998


Q ss_pred             hh
Q 025537          246 AK  247 (251)
Q Consensus       246 P~  247 (251)
                      |+
T Consensus       309 ~~  310 (311)
T 3nf1_A          309 KQ  310 (311)
T ss_dssp             C-
T ss_pred             hc
Confidence            86

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.31  E-value=1.3e-11  Score=82.97  Aligned_cols=73  Identities=16%  Similarity=0.155  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          176 GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       176 ~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +|..++.+++++|.++...|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus         4 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             cccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            4433678999999999999999999999999999999999999999999999999999999999999999975

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.30  E-value=7.4e-12  Score=94.15  Aligned_cols=90  Identities=9%  Similarity=-0.048  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-HHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP-TALYL  220 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~  220 (251)
                      .+..+..+.+.|..+++.|+|++|+..++++|+++|. ++.+|+++|.+|..+|+|++|+.+|++|+.++|+++ .+...
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~  137 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVARE  137 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            4456788999999999999999999999999999998 999999999999999999999999999999999998 66777


Q ss_pred             HHHHHHhCCCHH
Q 025537          221 QAACLFSLGMEN  232 (251)
Q Consensus       221 ~g~~~~~~~~~~  232 (251)
                      ++.+...++++.
T Consensus       138 l~~~~~~~~~~~  149 (162)
T 3rkv_A          138 MKIVTERRAEKK  149 (162)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            777766655443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.30  E-value=9.8e-12  Score=96.59  Aligned_cols=98  Identities=12%  Similarity=0.068  Sum_probs=84.3

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      +..+...|..++..|+|++|+.+|+++++++|. +..+++++|.+|..+|++++|+..|++++.++|+++.++..++.++
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            467889999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHH-HHHHHHHhh
Q 025537          226 FSLGMENDAR-ETLKDGTNL  244 (251)
Q Consensus       226 ~~~~~~~~A~-~~~~~al~l  244 (251)
                      ..+++++++. ..|.+.+..
T Consensus       167 ~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          167 NKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            9999999888 555555443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.30  E-value=2.5e-11  Score=101.07  Aligned_cols=104  Identities=10%  Similarity=0.007  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-----SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW----  214 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----  214 (251)
                      ..+..+.+.|..+.. |+|++|+.+|++|+++.|..     ...++.++|.+|..+|+|++|+..|++++.+.|++    
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  192 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP  192 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence            346788899999998 99999999999999987641     15789999999999999999999999999987654    


Q ss_pred             --hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          215 --PTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       215 --~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                        ..+++.+|.++..+|++++|+.+|++++ ++|+..
T Consensus       193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          193 TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence              3588999999999999999999999999 999753

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.30  E-value=3.5e-11  Score=100.33  Aligned_cols=110  Identities=8%  Similarity=-0.027  Sum_probs=102.6

Q ss_pred             hHHHHHHHHHHHHHHhHHHhhc--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHh
Q 025537          139 WTSQMQETLNSKKHGDTAFRAK--DFSTAIDCYTQFIDGGTMVSPTVYARRCLSY----LMN---DMPQEALGDAMQAQV  209 (251)
Q Consensus       139 ~~~~~~~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~al~  209 (251)
                      ..-+|.....+..+|..+...+  ++++|+.+++++|..+|+ +..+|+.|+.++    ..+   +++++++..+.++++
T Consensus        60 L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~  138 (306)
T 3dra_A           60 INELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS  138 (306)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH
T ss_pred             HHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence            3346777889999999999999  999999999999999999 999999999999    777   889999999999999


Q ss_pred             hCCCChHHHHHHHHHHHhCCCHH--HHHHHHHHHHhhhhhcc
Q 025537          210 VSPDWPTALYLQAACLFSLGMEN--DARETLKDGTNLEAKKN  249 (251)
Q Consensus       210 ~~p~~~~~~~~~g~~~~~~~~~~--~A~~~~~~al~l~P~~~  249 (251)
                      .+|++..+|+.++.++..+|.++  ++++.++++++++|+|.
T Consensus       139 ~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~  180 (306)
T 3dra_A          139 SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNN  180 (306)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCH
T ss_pred             hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999999  99999999999999863

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.30  E-value=2.6e-11  Score=109.52  Aligned_cols=109  Identities=4%  Similarity=-0.141  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHhHHHhhcC----------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 025537          140 TSQMQETLNSKKHGDTAFRAKD----------FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND--MPQEALGDAMQA  207 (251)
Q Consensus       140 ~~~~~~a~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a  207 (251)
                      ..+|+....|..+|..+...|+          +++|+.+|+++++.+|+ +..+|++|+.++.+++  +|++|+..|.++
T Consensus        57 ~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~  135 (567)
T 1dce_A           57 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARF  135 (567)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence            3367778899999999999988          99999999999999999 9999999999999999  779999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhhhhcc
Q 025537          208 QVVSPDWPTALYLQAACLFSLG-MENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       208 l~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~l~P~~~  249 (251)
                      ++++|.+..+|++++.++..+| .+++++++++++++++|++.
T Consensus       136 l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~  178 (567)
T 1dce_A          136 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY  178 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred             HhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc
Confidence            9999999999999999999999 99999999999999999864

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.30  E-value=1.6e-11  Score=90.64  Aligned_cols=103  Identities=11%  Similarity=0.116  Sum_probs=83.4

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-----SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW------  214 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------  214 (251)
                      +..+...|..++..|+|++|+.+|.+++++.+..     ...++.++|.++..+|++++|+..+++++.+.+..      
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  128 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE  128 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhH
Confidence            3578888999999999999999999988775421     25678888999999999999999999988875433      


Q ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          215 PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ..+++.+|.++..+|++++|+..|++++++..+.
T Consensus       129 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  162 (164)
T 3ro3_A          129 GRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  162 (164)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence            4678888999999999999999999998887654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.29  E-value=4.8e-12  Score=94.72  Aligned_cols=75  Identities=15%  Similarity=-0.028  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHhHHHhhcCH----------HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC-----------CHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDF----------STAIDCYTQFIDGGTMVSPTVYARRCLSYLMND-----------MPQEA  200 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~-----------~~~~A  200 (251)
                      +|.+++.+.+.|..+...+++          ++|+..|++||+++|+ +..+|+++|.+|..+|           +|++|
T Consensus        32 ~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA  110 (158)
T 1zu2_A           32 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA  110 (158)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHH
Confidence            667799999999999998876          5999999999999999 9999999999999885           89999


Q ss_pred             HHHHHHHHhhCCCChHH
Q 025537          201 LGDAMQAQVVSPDWPTA  217 (251)
Q Consensus       201 ~~~~~~al~~~p~~~~~  217 (251)
                      +.+|++|++++|++..+
T Consensus       111 ~~~~~kAl~l~P~~~~y  127 (158)
T 1zu2_A          111 TQFFQQAVDEQPDNTHY  127 (158)
T ss_dssp             HHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHhCCCCHHH
Confidence            99999999999998643

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.29  E-value=8.7e-11  Score=96.93  Aligned_cols=103  Identities=9%  Similarity=-0.010  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hhCCCCh-
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-----SPTVYARRCLSYLMNDMPQEALGDAMQAQ---VVSPDWP-  215 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~~p~~~-  215 (251)
                      ....+...|..+...|+|++|+.+|.++++..+..     ...+|+++|.+|..+|+|++|+..+++|+   +..|+.. 
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~  193 (293)
T 2qfc_A          114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE  193 (293)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence            34556678999999999999999999999875431     15689999999999999999999999999   5566643 


Q ss_pred             ---HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          216 ---TALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       216 ---~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                         .+++++|.+|..+|+|++|+..|++++++.++
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence               69999999999999999999999999999865

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.29  E-value=1.7e-11  Score=104.75  Aligned_cols=107  Identities=15%  Similarity=0.129  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hC
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-----SPTVYARRCLSYLMNDMPQEALGDAMQAQV-----VS  211 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~  211 (251)
                      .+..+..+...|..+...|+|++|+.+|.+|+++.+..     .+.+++++|.+|..+|++++|+..+++|+.     .+
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            34457789999999999999999999999999885431     235899999999999999999999999999     46


Q ss_pred             -CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          212 -PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       212 -p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                       |..+.+++.+|.++..+|++++|+..|++++++.++.
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  297 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA  297 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence             8889999999999999999999999999999997653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.29  E-value=3.1e-11  Score=108.49  Aligned_cols=104  Identities=13%  Similarity=-0.100  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      +.....+...|..+.+.|++++|+..|+++++..|. +..+|..++.+|.+.|++++|+..|+++++++|+++.+|+.+|
T Consensus       404 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  482 (597)
T 2xpi_A          404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG  482 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            344668888999999999999999999999999998 8899999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          223 ACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       223 ~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      .+|...|++++|+..|++++++.|+
T Consensus       483 ~~~~~~g~~~~A~~~~~~~~~~~~~  507 (597)
T 2xpi_A          483 VVAFNKSDMQTAINHFQNALLLVKK  507 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999998654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.28  E-value=2.6e-11  Score=100.93  Aligned_cols=103  Identities=13%  Similarity=0.017  Sum_probs=93.1

Q ss_pred             HHHH-HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          144 QETL-NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM-NDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       144 ~~a~-~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ..+. .+...|..+.+.|++++|+..|++|++.+|. +..+|...+...+. +|++++|+..|+++++++|+++.+|..+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  209 (308)
T 2ond_A          131 IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY  209 (308)
T ss_dssp             SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            3344 7899999999999999999999999999998 88888877766543 7999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhh---hhh
Q 025537          222 AACLFSLGMENDARETLKDGTNL---EAK  247 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l---~P~  247 (251)
                      |..+..+|++++|...|+++++.   +|+
T Consensus       210 ~~~~~~~g~~~~A~~~~~~al~~~~l~p~  238 (308)
T 2ond_A          210 IDYLSHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence            99999999999999999999995   564

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.28  E-value=3.2e-11  Score=103.33  Aligned_cols=95  Identities=15%  Similarity=0.119  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+.+.|..+++.|+|++|+.+|+++++++|+ ++.+|+++|.+|..+|++++|+.++++|++++|++..++..+
T Consensus       269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4566889999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHH
Q 025537          222 AACLFSLGMENDARET  237 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~  237 (251)
                      +.++..++++++|...
T Consensus       348 ~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          348 LKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999888654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.28  E-value=1.6e-11  Score=107.35  Aligned_cols=106  Identities=9%  Similarity=-0.033  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN-------------------DMPQEALG  202 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~-------------------~~~~~A~~  202 (251)
                      .+..+..+...|..+...|++++|+..|.++++.+|+ ++.+++++|.+|...                   +.+++|+.
T Consensus       243 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  321 (472)
T 4g1t_A          243 APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVA  321 (472)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHH
Confidence            4455778889999999999999999999999999998 999999999887643                   34678888


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          203 DAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       203 ~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+++++.++|.++.+++.+|.++..+|++++|+.+|+++++++|+.
T Consensus       322 ~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~  367 (472)
T 4g1t_A          322 HLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP  367 (472)
T ss_dssp             HHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence            8999999999999999999999999999999999999998887753

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.27  E-value=2.9e-11  Score=99.80  Aligned_cols=102  Identities=14%  Similarity=0.131  Sum_probs=89.7

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHH---ccCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFI---DGGTMVSP----TVYARRCLSYLMNDMPQEALGDAMQAQVVSPD----  213 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----  213 (251)
                      .+..+...|..++..|+|++|+.+|++|+   +..|. +.    .+++++|.+|..+|+|++|+..+++|+.+.++    
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~  232 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence            36788999999999999999999999999   44443 32    68999999999999999999999999998653    


Q ss_pred             --ChHHHHHHHHHHHhCCCHHHH-HHHHHHHHhhhhh
Q 025537          214 --WPTALYLQAACLFSLGMENDA-RETLKDGTNLEAK  247 (251)
Q Consensus       214 --~~~~~~~~g~~~~~~~~~~~A-~~~~~~al~l~P~  247 (251)
                        ...+|+++|.+|..+|++++| ..+|++|+.+...
T Consensus       233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~  269 (293)
T 2qfc_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI  269 (293)
T ss_dssp             SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence              278999999999999999999 8889999988654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.27  E-value=4e-11  Score=98.88  Aligned_cols=102  Identities=14%  Similarity=0.111  Sum_probs=94.2

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCh
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS----PTVYARRCLSYLMNDMPQEALGDAMQAQVV------SPDWP  215 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~  215 (251)
                      +..+...|..++..|+|++|+.+|+++++.+|. +    ..++.++|.++...|++++|+..+++++.+      .|..+
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            567788999999999999999999999999987 6    478899999999999999999999999988      55668


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          216 TALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+++.+|.++..+|++++|+..|++++++.|+.
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  116 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISREL  116 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999998864

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.27  E-value=3e-11  Score=103.59  Aligned_cols=104  Identities=13%  Similarity=0.097  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CC
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP----TVYARRCLSYLMNDMPQEALGDAMQAQVV------SP  212 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p  212 (251)
                      +..+..+...|..++..|+|++|+.+|+++++.+|. +.    .+|+++|.+|..+|++++|+..+++++.+      .|
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence            345778889999999999999999999999999987 65    58999999999999999999999999998      67


Q ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          213 DWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       213 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ....+++.+|.+|..+|++++|+..|++++++.+.
T Consensus       124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  158 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQ  158 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.26  E-value=1.6e-11  Score=102.28  Aligned_cols=105  Identities=10%  Similarity=-0.068  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW----  214 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----  214 (251)
                      ..+..+.+.|..+...|+|++|+.+|++|+++.+.     ..+.++.++|.+|.. |++++|+..|++|+.+.|..    
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~  152 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR  152 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence            34778899999999999999999999999988432     125789999999999 99999999999999998754    


Q ss_pred             --hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          215 --PTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       215 --~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                        ..+++++|.+|..+|+|++|+.+|++++++.|++.
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence              68899999999999999999999999999988753

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.26  E-value=3.9e-11  Score=102.13  Aligned_cols=102  Identities=14%  Similarity=0.111  Sum_probs=93.9

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCh
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS----PTVYARRCLSYLMNDMPQEALGDAMQAQVV------SPDWP  215 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~  215 (251)
                      +..+...|..++..|+|++|+.+|+++++..|. +    ..+|..+|.+++..|++++|+..+++++.+      .|..+
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            556788999999999999999999999999987 6    468999999999999999999999999988      45668


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          216 TALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+++.+|.++..+|++++|+..|++++++.|+.
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  120 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISREL  120 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence            899999999999999999999999999998875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.25  E-value=1.1e-10  Score=94.91  Aligned_cols=99  Identities=13%  Similarity=0.060  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHhHHHh----hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCC
Q 025537          143 MQETLNSKKHGDTAFR----AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDW  214 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~  214 (251)
                      +..+..+...|..+..    .+++++|+.+|+++++.+   ++.+++++|.+|..    .+++++|+..+++|++.+  +
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~  109 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y  109 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C
Confidence            4456788999999999    999999999999999986   78999999999999    999999999999999984  8


Q ss_pred             hHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhhh
Q 025537          215 PTALYLQAACLFS----LGMENDARETLKDGTNLEA  246 (251)
Q Consensus       215 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~P  246 (251)
                      +.+++.+|.+|..    .+++++|+.+|++++++++
T Consensus       110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~  145 (273)
T 1ouv_A          110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND  145 (273)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc
Confidence            9999999999999    9999999999999998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.25  E-value=1.8e-11  Score=110.48  Aligned_cols=108  Identities=8%  Similarity=0.014  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHhHHHhhc--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCChHH
Q 025537          141 SQMQETLNSKKHGDTAFRAK--DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND-MPQEALGDAMQAQVVSPDWPTA  217 (251)
Q Consensus       141 ~~~~~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~  217 (251)
                      .+++....|..+|-.+.+.+  +|++|+.+++++++.+|. |..+|++|+.+...+| .++++++++.++|+.+|.+..+
T Consensus       102 ~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa  180 (567)
T 1dce_A          102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS  180 (567)
T ss_dssp             HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH
Confidence            36677889999999999999  779999999999999999 9999999999999999 8999999999999999999999


Q ss_pred             HHHHHHHHHhC--------------CCHHHHHHHHHHHHhhhhhcc
Q 025537          218 LYLQAACLFSL--------------GMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       218 ~~~~g~~~~~~--------------~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |+++|.++..+              +.+++|++++.+|++++|+++
T Consensus       181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~  226 (567)
T 1dce_A          181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ  226 (567)
T ss_dssp             HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred             HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc
Confidence            99999999886              668999999999999999875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.25  E-value=2.6e-11  Score=100.07  Aligned_cols=104  Identities=9%  Similarity=-0.027  Sum_probs=88.7

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCC
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-S----PTVYARRCLSYLMNDMPQEALGDAMQAQVV-------SPD  213 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~p~  213 (251)
                      +..+...|..+...++|++|+.+|.+++++.+.. +    ..+++++|.+|..+|+|++|+..+++|++.       .+.
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            4456678999999999999999999999865431 1    347999999999999999999999999952       233


Q ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          214 WPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       214 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ...+++++|.+|..+|+|++|+..|++++++.++..
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~  230 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN  230 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999988753

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.25  E-value=2e-11  Score=84.58  Aligned_cols=83  Identities=11%  Similarity=0.090  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--hHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW--PTALYL  220 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~  220 (251)
                      |..+..+...|..++..|+|++|+..|+++++++|+ ++.+|+++|.+|..+|++++|+..+++++++.|..  ..+...
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            445678899999999999999999999999999998 99999999999999999999999999999997753  344344


Q ss_pred             HHHHHH
Q 025537          221 QAACLF  226 (251)
Q Consensus       221 ~g~~~~  226 (251)
                      +...+.
T Consensus        83 l~~~l~   88 (100)
T 3ma5_A           83 LQDAKL   88 (100)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.25  E-value=3.3e-11  Score=102.92  Aligned_cols=104  Identities=13%  Similarity=0.039  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCC
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGT-----MVSPTVYARRCLSYLMNDMPQEALGDAMQAQV-----VSPD  213 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~  213 (251)
                      ..+..+...|..++..|+|++|+.+|.+|+++.+     ...+.+++++|.+|..+|++++|+..+++|+.     .+|.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence            4577889999999999999999999999998632     11356899999999999999999999999999     8888


Q ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          214 WPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       214 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      .+.+++.+|.++..+|++++|+..|++++++.++
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.24  E-value=3.8e-11  Score=92.72  Aligned_cols=107  Identities=10%  Similarity=-0.069  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG---GTM---VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD--  213 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--  213 (251)
                      .+..+..+...|..+...|+|++|+.+|.+++++   .++   ....+++++|.++..+|++++|+..+++++.+.+.  
T Consensus        62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  141 (203)
T 3gw4_A           62 HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD  141 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence            3456778888999999999999999999999887   321   13567888999999999999999999998876432  


Q ss_pred             C----hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          214 W----PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       214 ~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +    ..++..+|.++..+|++++|...|++++++..+.
T Consensus       142 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  180 (203)
T 3gw4_A          142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL  180 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence            2    3446888999999999999999999999887654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.24  E-value=1.8e-11  Score=91.70  Aligned_cols=77  Identities=8%  Similarity=0.001  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc-------CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-------GTMVSPTVY----ARRCLSYLMNDMPQEALGDAMQAQVVSP  212 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~----~~~a~~~~~~~~~~~A~~~~~~al~~~p  212 (251)
                      ..+..|.++|..+.+.|+|++|+.+|++||++       +|+ ++.+|    +++|.++..+|++++|+.+|++|++++|
T Consensus        55 ~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p  133 (159)
T 2hr2_A           55 FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  133 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            34669999999999999999999999999999       998 99999    9999999999999999999999999999


Q ss_pred             CChHHHHHH
Q 025537          213 DWPTALYLQ  221 (251)
Q Consensus       213 ~~~~~~~~~  221 (251)
                      ++...+-.+
T Consensus       134 ~d~~~~~~~  142 (159)
T 2hr2_A          134 ERKGETPGK  142 (159)
T ss_dssp             HCCSCCTTH
T ss_pred             CcHHHHHHH
Confidence            876544333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.23  E-value=2.9e-11  Score=99.86  Aligned_cols=88  Identities=10%  Similarity=-0.026  Sum_probs=76.7

Q ss_pred             HHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHhCCCHHH
Q 025537          156 AFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW--PTALYLQAACLFSLGMEND  233 (251)
Q Consensus       156 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~~~~~~~~~~  233 (251)
                      +...+++++|+..|.++++.+|+ +..+++++|.++...|++++|+..+.++++.+|++  ..++.++|.++..+|+.++
T Consensus       195 l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence            33334444455566667788998 99999999999999999999999999999999999  9999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 025537          234 ARETLKDGTNL  244 (251)
Q Consensus       234 A~~~~~~al~l  244 (251)
                      |...|++++..
T Consensus       274 a~~~~r~al~~  284 (287)
T 3qou_A          274 LASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999853

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.23  E-value=4.4e-11  Score=102.21  Aligned_cols=105  Identities=13%  Similarity=0.019  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV------SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP-  215 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-  215 (251)
                      +..+..+...|..++..|++++|+.+|.+|+++.+..      .+.+++++|.+|..+|++++|+..+++|+.+.|... 
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  219 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ  219 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence            3456666667777777777777777777766653220      234666677777777777777777777766644332 


Q ss_pred             -----HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          216 -----TALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       216 -----~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                           .+++++|.+|..+|++++|+.+|++++++.++
T Consensus       220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  256 (383)
T 3ulq_A          220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE  256 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence                 46667777777777777777777777666554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.23  E-value=4.3e-11  Score=83.06  Aligned_cols=72  Identities=13%  Similarity=0.063  Sum_probs=69.2

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          175 GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       175 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ++|+ ++.+++.+|.+++..|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|+
T Consensus         1 l~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            1 MVDQ-NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             CCCS-STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             CCCC-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            3676 88999999999999999999999999999999999999999999999999999999999999999997

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.23  E-value=3.4e-11  Score=98.77  Aligned_cols=104  Identities=10%  Similarity=-0.038  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG--------TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV----  210 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----  210 (251)
                      +..+..+...|..++..|+|++|+.+|.+++++.        |. ...++.++|.++..+|++++|+..+++++.+    
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD-VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            5567889999999999999999999999999873        44 6788999999999999999999999999998    


Q ss_pred             ----CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          211 ----SPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       211 ----~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                          .|....+++.+|.+|..+|++++|+..|++++++.|+
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE  227 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                7888899999999999999999999999999998776

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.22  E-value=5.1e-11  Score=87.88  Aligned_cols=105  Identities=10%  Similarity=0.016  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW----  214 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----  214 (251)
                      ..+..+...|..++..|+|++|+.+|.+++++.+.     ....++.++|.++..+|++++|+..+++++.+.+..    
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   86 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            34788899999999999999999999999987432     258899999999999999999999999999986653    


Q ss_pred             --hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          215 --PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       215 --~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                        ..+++.+|.++..+|++++|+..|++++++.++.
T Consensus        87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  122 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  122 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence              6789999999999999999999999999987653

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.22  E-value=5.9e-11  Score=85.20  Aligned_cols=67  Identities=16%  Similarity=-0.053  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ..++.+|.+++..|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~   84 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   84 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            3578899999999999999999999999999999999999999999999999999999999999985

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.21  E-value=1.1e-11  Score=102.11  Aligned_cols=104  Identities=7%  Similarity=-0.065  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-----H
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP-----T  216 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~  216 (251)
                      .+..+..+...|..+++.|+|++|+..|+++++++|+ +..+++++|.+|..+|++++|+..++++++++|+++     .
T Consensus        34 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~  112 (281)
T 2c2l_A           34 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD  112 (281)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHH
Confidence            4556888999999999999999999999999999998 999999999999999999999999999999998652     1


Q ss_pred             H--------------------------HHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          217 A--------------------------LYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       217 ~--------------------------~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .                          ...++.  +..|++++|++.|+++++++|++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~~~~~~A~~~~~~al~~~p~~  168 (281)
T 2c2l_A          113 IPSALRIAKKKRWNSIEERRIHQESELHSYLTR--LIAAERERELEECQRNHEGHEDD  168 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHHHHHHHHHTTTSGGGTTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHhhhccccch
Confidence            1                          112222  23689999999999999999964

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.21  E-value=9.8e-11  Score=84.83  Aligned_cols=73  Identities=12%  Similarity=0.049  Sum_probs=68.8

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          175 GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       175 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+|. ++..|+++|.+++..|+|++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus         4 ~~~~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~   76 (137)
T 3q49_B            4 MKSP-SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS   76 (137)
T ss_dssp             --CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             Cccc-cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence            4555 899999999999999999999999999999999999999999999999999999999999999999975

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.19  E-value=1.2e-10  Score=97.82  Aligned_cols=108  Identities=8%  Similarity=0.021  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHhHHHhhc--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCChHH
Q 025537          141 SQMQETLNSKKHGDTAFRAK--DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM-PQEALGDAMQAQVVSPDWPTA  217 (251)
Q Consensus       141 ~~~~~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~  217 (251)
                      .+|+....+..++..+...+  .+++++.+++++++.+|. |..+|++|+.+...+|. ++++++++.++|+.+|.+..+
T Consensus       103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SA  181 (331)
T 3dss_A          103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS  181 (331)
T ss_dssp             HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHH
Confidence            35667888889999998888  499999999999999999 99999999999999999 699999999999999999999


Q ss_pred             HHHHHHHHHhC--------------CCHHHHHHHHHHHHhhhhhcc
Q 025537          218 LYLQAACLFSL--------------GMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       218 ~~~~g~~~~~~--------------~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |++++.++..+              +.++++++++.+++.++|+++
T Consensus       182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~  227 (331)
T 3dss_A          182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ  227 (331)
T ss_dssp             HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence            99999999988              569999999999999999975

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.19  E-value=8.3e-11  Score=98.06  Aligned_cols=107  Identities=11%  Similarity=-0.061  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHhHH----Hhh---cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCC
Q 025537          142 QMQETLNSKKHGDTA----FRA---KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQ--EALGDAMQAQVVSP  212 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~--~A~~~~~~al~~~p  212 (251)
                      +|+....+..++..+    ...   +++++++.+++++++.+|. |..+|+.|+.+...+|.++  ++++.+.++++.+|
T Consensus        99 nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~  177 (306)
T 3dra_A           99 NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL  177 (306)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred             CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence            455566777777777    555   7899999999999999999 9999999999999999998  99999999999999


Q ss_pred             CChHHHHHHHHHHHhCCC------HHHHHHHHHHHHhhhhhcc
Q 025537          213 DWPTALYLQAACLFSLGM------ENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       213 ~~~~~~~~~g~~~~~~~~------~~~A~~~~~~al~l~P~~~  249 (251)
                      .+..+|++++.++..++.      +++++++++++|+++|++.
T Consensus       178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~  220 (306)
T 3dra_A          178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNP  220 (306)
T ss_dssp             TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCH
T ss_pred             CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999998      9999999999999999875

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.19  E-value=6.7e-11  Score=81.11  Aligned_cols=66  Identities=15%  Similarity=0.094  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          184 YARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT-ALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       184 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .+++|.+++..|++++|+..|+++++.+|+++. +|+.+|.+|..+|++++|+.+|+++++++|++.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   69 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP   69 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            357899999999999999999999999999999 999999999999999999999999999999864

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.18  E-value=3.8e-10  Score=91.68  Aligned_cols=97  Identities=10%  Similarity=-0.020  Sum_probs=90.2

Q ss_pred             HHHHHHHHHhHHHh----hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChH
Q 025537          145 ETLNSKKHGDTAFR----AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWPT  216 (251)
Q Consensus       145 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~  216 (251)
                      .+..+...|..++.    .+++++|+.+|+++++.+   ++.+++++|.+|..    .+++++|+..+++|++.+  ++.
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~  147 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGD  147 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHH
Confidence            57788999999999    999999999999999985   78999999999999    999999999999999986  789


Q ss_pred             HHHHHHHHHHh----CCCHHHHHHHHHHHHhhhh
Q 025537          217 ALYLQAACLFS----LGMENDARETLKDGTNLEA  246 (251)
Q Consensus       217 ~~~~~g~~~~~----~~~~~~A~~~~~~al~l~P  246 (251)
                      +++.+|.+|..    .+++++|+.+|++++++++
T Consensus       148 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~  181 (273)
T 1ouv_A          148 GCTILGSLYDAGRGTPKDLKKALASYDKACDLKD  181 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            99999999999    9999999999999998754

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.17  E-value=3.5e-10  Score=79.68  Aligned_cols=85  Identities=14%  Similarity=0.146  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      .....+...|..++..|++++|+..|.++++.+|. +..++.++|.++..+|++++|+..+++++.++|+++.+++.+|.
T Consensus        41 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  119 (125)
T 1na0_A           41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN  119 (125)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34667889999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHhCC
Q 025537          224 CLFSLG  229 (251)
Q Consensus       224 ~~~~~~  229 (251)
                      ++...|
T Consensus       120 ~~~~~g  125 (125)
T 1na0_A          120 AKQKQG  125 (125)
T ss_dssp             HHHHHC
T ss_pred             HHHhcc
Confidence            987654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.17  E-value=7.8e-11  Score=96.61  Aligned_cols=105  Identities=11%  Similarity=-0.078  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-ChHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG-TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS--PD-WPTA  217 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~  217 (251)
                      .+... ..+..|..+++.++|++|+.+|++++... |.....+++++|.++..+|++++|+..|++++.-.  |. .+.+
T Consensus       132 ~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da  210 (282)
T 4f3v_A          132 GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAI  210 (282)
T ss_dssp             TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHH
T ss_pred             CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHH
Confidence            34556 78999999999999999999999888764 21014589999999999999999999999998654  66 6789


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          218 LYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       218 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ++++|.++..+|+.++|...|++++..+|+
T Consensus       211 ~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          211 AWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            999999999999999999999999999997

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.17  E-value=2.7e-10  Score=79.57  Aligned_cols=83  Identities=10%  Similarity=-0.036  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+...|..++..|+|++|+..|.++++.+|. +..++.++|.++..+|++++|+..++++++++|+++.++..+
T Consensus        34 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  112 (118)
T 1elw_A           34 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL  112 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            3445778899999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 025537          222 AACL  225 (251)
Q Consensus       222 g~~~  225 (251)
                      +.+.
T Consensus       113 ~~~~  116 (118)
T 1elw_A          113 QNME  116 (118)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8775

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.15  E-value=1.2e-10  Score=99.04  Aligned_cols=105  Identities=10%  Similarity=0.017  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-----SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW----  214 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----  214 (251)
                      ..+..+...|..++..|+|++|+.+|.+++++.|..     ...++.++|.+|..+|++++|+..+++++.+.|..    
T Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  264 (406)
T 3sf4_A          185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA  264 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch
Confidence            345677788888888888888888888888765430     12377888888888888888888888888776665    


Q ss_pred             --hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          215 --PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       215 --~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                        ..+++.+|.++..+|++++|+..|++++++.++.
T Consensus       265 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  300 (406)
T 3sf4_A          265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  300 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence              6777888888888888888888888888776653

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.15  E-value=2.7e-10  Score=96.22  Aligned_cols=111  Identities=7%  Similarity=-0.056  Sum_probs=102.4

Q ss_pred             hhHHHHHHHHHHHHHHhHHHhhc-CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHhhCCCC
Q 025537          138 MWTSQMQETLNSKKHGDTAFRAK-DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN-D-MPQEALGDAMQAQVVSPDW  214 (251)
Q Consensus       138 ~~~~~~~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~~~p~~  214 (251)
                      ....+|+....+..+|..+...| .+++++.+++++|..+|+ +..+|+.|+.++..+ + ++++++..+.++++.+|++
T Consensus        80 ~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN  158 (349)
T 3q7a_A           80 IVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN  158 (349)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC
T ss_pred             HHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Confidence            33446777889999999999988 599999999999999999 999999999999998 8 8999999999999999999


Q ss_pred             hHHHHHHHHHHHhCCCHH--------HHHHHHHHHHhhhhhcc
Q 025537          215 PTALYLQAACLFSLGMEN--------DARETLKDGTNLEAKKN  249 (251)
Q Consensus       215 ~~~~~~~g~~~~~~~~~~--------~A~~~~~~al~l~P~~~  249 (251)
                      ..+|+.++.++..+|.++        ++++.++++++++|+|.
T Consensus       159 y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~  201 (349)
T 3q7a_A          159 YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN  201 (349)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999998        99999999999999864

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.14  E-value=6.1e-10  Score=93.59  Aligned_cols=107  Identities=4%  Similarity=-0.136  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHhHHHhhcC----------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHh
Q 025537          142 QMQETLNSKKHGDTAFRAKD----------FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM--PQEALGDAMQAQV  209 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~  209 (251)
                      +|+....+..++..+...+.          +++++.+++.++..+|. +..+|+.|+.++..+++  +++++..|.++++
T Consensus        60 nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~  138 (331)
T 3dss_A           60 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLE  138 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence            45556666777777766554          78999999999999999 99999999999999994  8999999999999


Q ss_pred             hCCCChHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhhhhcc
Q 025537          210 VSPDWPTALYLQAACLFSLGM-ENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       210 ~~p~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~l~P~~~  249 (251)
                      ++|.+..+|++++.++..+|. ++++++++.++++++|+|.
T Consensus       139 ~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~  179 (331)
T 3dss_A          139 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY  179 (331)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH
T ss_pred             hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCH
Confidence            999999999999999999999 6999999999999999864

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.13  E-value=1.4e-10  Score=99.41  Aligned_cols=104  Identities=13%  Similarity=0.029  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS------PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---  214 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---  214 (251)
                      ..+..+...|..++..|+|++|+.+|.+++++.|. .      ..++.++|.+|..+|++++|+..+++++.+.|..   
T Consensus       221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  299 (411)
T 4a1s_A          221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER  299 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence            34568888999999999999999999999988653 2      2388999999999999999999999999988755   


Q ss_pred             ---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          215 ---PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       215 ---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                         ..+++.+|.++..+|++++|+.+|++++++.++.
T Consensus       300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  336 (411)
T 4a1s_A          300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL  336 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence               7889999999999999999999999999987764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=1.1e-09  Score=79.88  Aligned_cols=81  Identities=10%  Similarity=0.003  Sum_probs=76.5

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      ...+...|..++..|+|++|+..|+++++.+|. +..+|+++|.++..+|++++|+..+++++.++|++..++..++.+.
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            788999999999999999999999999999998 9999999999999999999999999999999999999998888775


Q ss_pred             Hh
Q 025537          226 FS  227 (251)
Q Consensus       226 ~~  227 (251)
                      ..
T Consensus       144 ~~  145 (148)
T 2dba_A          144 GP  145 (148)
T ss_dssp             CS
T ss_pred             hh
Confidence            43

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.12  E-value=4.4e-10  Score=88.49  Aligned_cols=96  Identities=16%  Similarity=0.018  Sum_probs=76.2

Q ss_pred             HHHHHHHHHhHHHhhc----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC--CC
Q 025537          145 ETLNSKKHGDTAFRAK----DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSP--DW  214 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p--~~  214 (251)
                      .+..+...|..+.. +    ++++|+.+|.++++..   ++.+++++|.+|..    .+++++|+..+++|++..|  ++
T Consensus        49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  124 (212)
T 3rjv_A           49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA  124 (212)
T ss_dssp             CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred             CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence            46677788888777 6    7888888888886543   67888888888877    7788888888888888877  45


Q ss_pred             hHHHHHHHHHHHh----CCCHHHHHHHHHHHHhh
Q 025537          215 PTALYLQAACLFS----LGMENDARETLKDGTNL  244 (251)
Q Consensus       215 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~l  244 (251)
                      +.+++.+|.+|..    .+++++|+.+|++++++
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            8888888888888    77888888888888877

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.11  E-value=5.4e-10  Score=76.46  Aligned_cols=71  Identities=18%  Similarity=-0.020  Sum_probs=64.2

Q ss_pred             CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          176 GTMVSPTVYARRCLSYLMNDM---PQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       176 ~p~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      +|+ ++.++..+|.+++..++   ..+|...+++|++++|+++.+++.+|..++..|+|++|+..|+++++.+|.
T Consensus         2 ~p~-~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAV-TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCC-CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            566 89999999999976655   699999999999999999999999999999999999999999999999987

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.11  E-value=4.5e-10  Score=95.86  Aligned_cols=105  Identities=13%  Similarity=-0.002  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM------VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD---  213 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---  213 (251)
                      +..+..+...|..++..|++++|+.+|.+|+++.+.      ..+.+++++|.+|..+|+|++|+..+.+|+.+.+.   
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~  217 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN  217 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Confidence            344556666666666666666666666666654321      02345566666666666666666666666665321   


Q ss_pred             ---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          214 ---WPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       214 ---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                         ...+++++|.+|..+|++++|+.+|++++++...
T Consensus       218 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~  254 (378)
T 3q15_A          218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE  254 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence               2345666666666666666666666666665443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.11  E-value=4.2e-10  Score=86.77  Aligned_cols=101  Identities=12%  Similarity=0.031  Sum_probs=92.6

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHc------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CC----
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFID------GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV---SP----  212 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p----  212 (251)
                      +..+...|..++..|+|++|+.+|.++++      ..|. ...+++++|.++..+|++++|+..+.+++.+   .+    
T Consensus        26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA-EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            66788999999999999999999999999      7887 8999999999999999999999999999998   44    


Q ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          213 DWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       213 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ....+++.+|.++..+|++++|+..|++++++.+.
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  139 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ  139 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            33677999999999999999999999999988664

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.10  E-value=9.4e-10  Score=92.93  Aligned_cols=96  Identities=10%  Similarity=-0.052  Sum_probs=87.9

Q ss_pred             HhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhC-C-
Q 025537          153 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND-MPQEALGDAMQAQVVSPDWPTALYLQAACLFSL-G-  229 (251)
Q Consensus       153 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~-~-  229 (251)
                      .....+.+..++|+.+++++|.++|+ +.++|+.|+.++..+| .+++++..+.+++..+|++..+|+.++.++..+ + 
T Consensus        61 r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~  139 (349)
T 3q7a_A           61 RAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ  139 (349)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC
Confidence            33444556668899999999999999 9999999999999999 599999999999999999999999999999998 8 


Q ss_pred             CHHHHHHHHHHHHhhhhhcc
Q 025537          230 MENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       230 ~~~~A~~~~~~al~l~P~~~  249 (251)
                      +++++++.+.++++++|+|.
T Consensus       140 ~~~~EL~~~~k~L~~dpkNy  159 (349)
T 3q7a_A          140 DPVSEIEYIHGSLLPDPKNY  159 (349)
T ss_dssp             CCHHHHHHHHHHTSSCTTCH
T ss_pred             ChHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999863

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.10  E-value=1.4e-09  Score=77.79  Aligned_cols=84  Identities=13%  Similarity=-0.020  Sum_probs=74.7

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      +..+...|..++..|+|++|+..|+++++.+|+ +   +.+++++|.++..+|++++|+..+++++...|+++.+...+.
T Consensus        39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~  117 (129)
T 2xev_A           39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE  117 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            367889999999999999999999999999998 7   889999999999999999999999999999999998877776


Q ss_pred             HHHHhCCC
Q 025537          223 ACLFSLGM  230 (251)
Q Consensus       223 ~~~~~~~~  230 (251)
                      .+....++
T Consensus       118 ~l~~l~~~  125 (129)
T 2xev_A          118 RLQSIRLG  125 (129)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHhh
Confidence            66555444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.10  E-value=2.4e-10  Score=94.10  Aligned_cols=104  Identities=11%  Similarity=0.018  Sum_probs=72.7

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-----  214 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----  214 (251)
                      .+..+...|..++..|++++|+.+|+++++..+.     ....++.++|.++..+|++++|+..+++++.+.|..     
T Consensus       182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  261 (338)
T 3ro2_A          182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV  261 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhH
Confidence            3556677777777777777777777777766432     012367777777777777777777777777766554     


Q ss_pred             -hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          215 -PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       215 -~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                       ..+++.+|.++..+|++++|+..|++++++.|+.
T Consensus       262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  296 (338)
T 3ro2_A          262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  296 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence             6677777777777777777777777777776653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.10  E-value=2.3e-10  Score=80.81  Aligned_cols=83  Identities=10%  Similarity=-0.046  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--hHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW--PTALYL  220 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~  220 (251)
                      +..+..+...|..++..|+|++|+..|.++++++|. +..+|+++|.+|..+|++++|+..+++++.++|..  ..+...
T Consensus        16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (115)
T 2kat_A           16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKE   94 (115)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHH
Confidence            344677889999999999999999999999999998 99999999999999999999999999999998853  444444


Q ss_pred             HHHHHH
Q 025537          221 QAACLF  226 (251)
Q Consensus       221 ~g~~~~  226 (251)
                      +...+.
T Consensus        95 l~~~l~  100 (115)
T 2kat_A           95 LQVFLR  100 (115)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444333

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.08  E-value=6.3e-10  Score=98.54  Aligned_cols=104  Identities=8%  Similarity=-0.058  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc-----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-----GTM--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV----  210 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----  210 (251)
                      ..+.+....+.+..+..+|+|++|+..|.++++.     .|+  ..+..++|+|.+|..+|+|++|+..+++++.+    
T Consensus       305 ~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~  384 (490)
T 3n71_A          305 MIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL  384 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            3445667778888888999999999999999965     222  04578999999999999999999999999985    


Q ss_pred             -CCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537          211 -SPDW---PTALYLQAACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       211 -~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                       -|++   ...++++|.+|..+|+|++|+..|++|+++-
T Consensus       385 lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~  423 (490)
T 3n71_A          385 YHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL  423 (490)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence             4555   5678999999999999999999999999874

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.06  E-value=1.9e-09  Score=75.22  Aligned_cols=77  Identities=12%  Similarity=-0.026  Sum_probs=69.6

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG-------TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL  218 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  218 (251)
                      ++..+..|..++..|+|..|+..|.+|++..       +. ...++.++|.+++++|+++.|+..+++|++++|+++.+.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~-~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTID-KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCccc-HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            5567899999999999999999999999863       22 678999999999999999999999999999999999998


Q ss_pred             HHHHH
Q 025537          219 YLQAA  223 (251)
Q Consensus       219 ~~~g~  223 (251)
                      .+++.
T Consensus        84 ~n~~~   88 (104)
T 2v5f_A           84 GNLKY   88 (104)
T ss_dssp             HHHHH
T ss_pred             hhHHH
Confidence            88873

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.05  E-value=2.3e-09  Score=84.33  Aligned_cols=103  Identities=11%  Similarity=-0.080  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHhHHHh----hcCHHHHHHHHHHHHccCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCC
Q 025537          144 QETLNSKKHGDTAFR----AKDFSTAIDCYTQFIDGGTM-VSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDW  214 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~-~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~  214 (251)
                      ..+..+...|..++.    .+++++|+.+|.++++..|. .++.+++++|.+|..    .+++++|+..|++|+++ |.+
T Consensus        83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~  161 (212)
T 3rjv_A           83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT  161 (212)
T ss_dssp             TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT
T ss_pred             CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC
Confidence            346788899999988    89999999999999999862 148999999999999    88999999999999999 788


Q ss_pred             hHHHHHHHHHHHhC-C-----CHHHHHHHHHHHHhhhhh
Q 025537          215 PTALYLQAACLFSL-G-----MENDARETLKDGTNLEAK  247 (251)
Q Consensus       215 ~~~~~~~g~~~~~~-~-----~~~~A~~~~~~al~l~P~  247 (251)
                      +.+++.+|.+|..- |     ++++|+.+|+++++....
T Consensus       162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          162 GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            99999999999864 3     899999999999987543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.04  E-value=1.2e-09  Score=80.87  Aligned_cols=88  Identities=9%  Similarity=0.013  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhC-C-CChHHHHHHHHHHHhCCCHHHHH
Q 025537          161 DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND---MPQEALGDAMQAQVVS-P-DWPTALYLQAACLFSLGMENDAR  235 (251)
Q Consensus       161 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~~g~~~~~~~~~~~A~  235 (251)
                      ....+...|.+.+..+|. +..+.++.|.++.+.+   ++++++..++..++.+ | ++.+++|++|.+++++|+|++|.
T Consensus        13 ~l~~~~~~y~~e~~~~~~-~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHccCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            345566677777777775 8888888888888887   6678888888888888 6 56888888888888888888888


Q ss_pred             HHHHHHHhhhhhcc
Q 025537          236 ETLKDGTNLEAKKN  249 (251)
Q Consensus       236 ~~~~~al~l~P~~~  249 (251)
                      .+++++|+++|+|.
T Consensus        92 ~y~~~lL~ieP~n~  105 (152)
T 1pc2_A           92 KYVRGLLQTEPQNN  105 (152)
T ss_dssp             HHHHHHHHHCTTCH
T ss_pred             HHHHHHHhcCCCCH
Confidence            88888888888763

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.02  E-value=1.7e-09  Score=94.32  Aligned_cols=101  Identities=10%  Similarity=-0.086  Sum_probs=82.9

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHcc-----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCC
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-----GTM--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV-----SPD  213 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~  213 (251)
                      +....+.+......|+|++|+..|.+++++     .|+  .-+..+.|+|.+|..+|+|++|+..+++++.+     -|+
T Consensus       298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~  377 (433)
T 3qww_A          298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY  377 (433)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            334445555556678999999999999975     333  03567999999999999999999999999985     345


Q ss_pred             C---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          214 W---PTALYLQAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       214 ~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      +   ...++++|.+|..+|+|++|+..|++|+++--
T Consensus       378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~  413 (433)
T 3qww_A          378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME  413 (433)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            5   56799999999999999999999999998753

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.98  E-value=2.1e-09  Score=76.36  Aligned_cols=69  Identities=19%  Similarity=0.073  Sum_probs=66.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+..|+.+|.+++..|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++++|++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            567899999999999999999999999999999999999999999999999999999999999999975

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.96  E-value=3.4e-09  Score=94.54  Aligned_cols=105  Identities=8%  Similarity=-0.147  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHhHHHh-------hcCHH-------HHHHHHHHHHc-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFR-------AKDFS-------TAIDCYTQFID-GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQ  206 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  206 (251)
                      .|..+..+...|..+.+       .|+++       +|+..|++|++ ..|+ +..+|.+++..+...|++++|...|++
T Consensus       268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~-~~~l~~~~~~~~~~~g~~~~A~~~~~~  346 (530)
T 2ooe_A          268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNR  346 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            45567788888888875       68876       88899999987 7887 888888888888888999999999999


Q ss_pred             HHhhCCCCh-HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          207 AQVVSPDWP-TALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       207 al~~~p~~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      +++++|+++ .+|..+|.++...|++++|...|++|++..|.
T Consensus       347 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~  388 (530)
T 2ooe_A          347 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  388 (530)
T ss_dssp             HHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            999888875 58888888877777777777777777776654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.95  E-value=3.9e-09  Score=92.07  Aligned_cols=100  Identities=11%  Similarity=0.014  Sum_probs=84.7

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccC-----CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCC
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG-----TM--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV-----SPD  213 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~  213 (251)
                      +.........+..+|+|++|+..|+++++..     |+  .....+.|+|.+|..+|+|++|+..+++++.+     -|+
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~  366 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS  366 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence            4556666777888999999999999999762     22  03568999999999999999999999999975     355


Q ss_pred             C---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537          214 W---PTALYLQAACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       214 ~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                      +   ...++++|.+|..+|++++|+..|++|+++-
T Consensus       367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~  401 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM  401 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            5   5678999999999999999999999999874

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.95  E-value=1.1e-08  Score=86.62  Aligned_cols=101  Identities=13%  Similarity=0.077  Sum_probs=84.7

Q ss_pred             HHHHHHHHhHHHhhc---CHHHHHHHHHHHHccCCCCCHHHHHHHHH---------------------------------
Q 025537          146 TLNSKKHGDTAFRAK---DFSTAIDCYTQFIDGGTMVSPTVYARRCL---------------------------------  189 (251)
Q Consensus       146 a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~a~---------------------------------  189 (251)
                      |-.++.+|..++..+   ++.+|+.+|++|++++|+ ++.+|..++.                                 
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            556677787777654   468899999999999998 7776664333                                 


Q ss_pred             -----------HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          190 -----------SYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       190 -----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                                 .+...|++++|+..+++|+.++|+ ..+|..+|.++...|++++|++.|.+|+.++|..
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                       334479999999999999999975 6788999999999999999999999999999964

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.92  E-value=5.5e-09  Score=93.16  Aligned_cols=104  Identities=10%  Similarity=-0.027  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP-TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      |.....+...|..+.+.|++++|...|+++++.+|. ++ .+|.+.+.++.++|++++|+..|++|++..|.....+...
T Consensus       318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~  396 (530)
T 2ooe_A          318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  396 (530)
T ss_dssp             SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence            344566777777777778888888888888887776 54 4777777666666666666666666666655555555544


Q ss_pred             HHH-HHhCCCHHHHHHHHHHHHhhhhh
Q 025537          222 AAC-LFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       222 g~~-~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      +.+ +...|++++|...|+++++.+|+
T Consensus       397 a~~~~~~~~~~~~A~~~~e~al~~~p~  423 (530)
T 2ooe_A          397 ALMEYYCSKDKSVAFKIFELGLKKYGD  423 (530)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCChhHHHHHHHHHHHHCCC
Confidence            443 23456666666666666666654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.92  E-value=2e-08  Score=73.63  Aligned_cols=90  Identities=9%  Similarity=-0.076  Sum_probs=84.2

Q ss_pred             HHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537          152 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  227 (251)
Q Consensus       152 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  227 (251)
                      .|..+...+.+++|+.+|++|.+..   ++.+++++|.+|..    .+++++|+..|++|.+.  .++.+++++|.+|..
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            8888888899999999999999984   88999999999999    89999999999999987  689999999999999


Q ss_pred             ----CCCHHHHHHHHHHHHhhhh
Q 025537          228 ----LGMENDARETLKDGTNLEA  246 (251)
Q Consensus       228 ----~~~~~~A~~~~~~al~l~P  246 (251)
                          .+++++|+.+|+++.+...
T Consensus       106 G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A          106 GKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCcCHHHHHHHHHHHHHCCC
Confidence                9999999999999998754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.89  E-value=5.1e-09  Score=88.75  Aligned_cols=101  Identities=17%  Similarity=0.092  Sum_probs=88.1

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGG--------TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW----  214 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----  214 (251)
                      ..+...|..++..|+|++|+.+|++++++.        |. ...++.++|.++..+|++++|+..+.+++.+.|..    
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  172 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM-HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  172 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence            346789999999999999999999999864        22 45678889999999999999999999999998863    


Q ss_pred             -hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          215 -PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       215 -~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                       ..+++.+|.++...|++++|...+++++++.+..
T Consensus       173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~  207 (373)
T 1hz4_A          173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG  207 (373)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence             5688999999999999999999999999987654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.88  E-value=1.4e-08  Score=85.98  Aligned_cols=68  Identities=7%  Similarity=-0.098  Sum_probs=35.5

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV----SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD  213 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  213 (251)
                      +..+...|..++..|++++|..+|.++++..+..    ...++.++|.++...|++++|+..+++++.+.+.
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~  206 (373)
T 1hz4_A          135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN  206 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            3344455555555555555555555555544321    1234555555555555555555555555555433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.83  E-value=6.6e-09  Score=85.17  Aligned_cols=97  Identities=9%  Similarity=0.068  Sum_probs=84.6

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW--PTALYLQAAC  224 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~  224 (251)
                      +.....+..+...|+|++|...|+.++...|. .. +++.+|.++++.++|++|+..+++++...+..  ..+++.+|.+
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence            34456688899999999999999999999987 66 99999999999999999999999887764222  4589999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhh
Q 025537          225 LFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~  245 (251)
                      +..+|++++|+.+|++++...
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTST
T ss_pred             HHHCCCHHHHHHHHHHHhcCC
Confidence            999999999999999998544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.77  E-value=8.9e-08  Score=84.44  Aligned_cols=96  Identities=11%  Similarity=0.018  Sum_probs=84.1

Q ss_pred             HHHHHHHHhHHHhhc---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChHHH
Q 025537          146 TLNSKKHGDTAFRAK---DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWPTAL  218 (251)
Q Consensus       146 a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~  218 (251)
                      +..+...|..++..|   ++++|+.+|+++++..   ++.+++++|.+|..    .+++++|+..|++|++..  ++.++
T Consensus       328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~  402 (490)
T 2xm6_A          328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQ  402 (490)
T ss_dssp             HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHH
Confidence            456778888887755   8899999999999874   78899999999998    899999999999998864  79999


Q ss_pred             HHHHHHHHh----CCCHHHHHHHHHHHHhhhh
Q 025537          219 YLQAACLFS----LGMENDARETLKDGTNLEA  246 (251)
Q Consensus       219 ~~~g~~~~~----~~~~~~A~~~~~~al~l~P  246 (251)
                      +++|.+|..    .+++++|..+|+++++.+|
T Consensus       403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            999999998    8999999999999999984

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.76  E-value=2e-08  Score=88.98  Aligned_cols=102  Identities=11%  Similarity=0.048  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG--------GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV----  210 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----  210 (251)
                      +..+..+.+.|..|..+|+|++|+.+|.++++.        .|+ -+..++|+|.+|..+|+|++|+..+++|+++    
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~-~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~  426 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ-LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVT  426 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            356788999999999999999999999999965        233 4678999999999999999999999999885    


Q ss_pred             -CCCCh---HHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537          211 -SPDWP---TALYLQAACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       211 -~p~~~---~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                       -|++|   +..-.++.++..++.|++|...|.++.+-.
T Consensus       427 lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          427 HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             56764   556788999999999999999999987643

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.74  E-value=3.2e-08  Score=67.53  Aligned_cols=71  Identities=7%  Similarity=-0.110  Sum_probs=64.0

Q ss_pred             HHHHHHHHHhHHHhhcC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Q 025537          145 ETLNSKKHGDTAFRAKD---FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT  216 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  216 (251)
                      +++.+...|..++..++   .++|..++.+|++++|+ +..+++.+|..+++.|+|++|+..++++++.+|..+.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            46777888998876655   79999999999999999 9999999999999999999999999999999998543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.74  E-value=6.6e-08  Score=78.87  Aligned_cols=88  Identities=13%  Similarity=0.018  Sum_probs=79.9

Q ss_pred             CHHHHHHHHHHHHccCCCC-CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHh-CCCHH
Q 025537          161 DFSTAIDCYTQFIDGGTMV-SPTVYARRCLSYLMN-----DMPQEALGDAMQAQVVSPDW-PTALYLQAACLFS-LGMEN  232 (251)
Q Consensus       161 ~~~~A~~~~~~al~~~p~~-~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~-~~~~~  232 (251)
                      ...+|...+++||++||+. +..+|..+|..|.+.     |+.++|...|++|++++|+. ...++..|..+.. .|+++
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            3578999999999999961 356999999999995     99999999999999999975 9999999999988 59999


Q ss_pred             HHHHHHHHHHhhhhhc
Q 025537          233 DARETLKDGTNLEAKK  248 (251)
Q Consensus       233 ~A~~~~~~al~l~P~~  248 (251)
                      +|...+++++..+|+.
T Consensus       258 ~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          258 GFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHcCCCCC
Confidence            9999999999999984

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.73  E-value=7.4e-08  Score=66.97  Aligned_cols=70  Identities=11%  Similarity=-0.128  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVS-------PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ++.-.+.+|..++..|+|..|+.-+++|++..       +..+..+..+|.+++.+|+++.|+..++++++++|++.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~   80 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            45667899999999999999999999999963       35688999999999999999999999999999999863

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.67  E-value=1.1e-07  Score=83.27  Aligned_cols=93  Identities=11%  Similarity=0.025  Sum_probs=68.5

Q ss_pred             HHHHHHhHHHhhc---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCChHHHHH
Q 025537          148 NSKKHGDTAFRAK---DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN----DMPQEALGDAMQAQVVSPDWPTALYL  220 (251)
Q Consensus       148 ~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~  220 (251)
                      .+...|..+...|   ++++|+.+|.++++..|. .+..++++|.+|...    +++++|+..|+++.   |+++.++++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~  253 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS  253 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence            5667777777777   777777777777777766 677777777777655    67777777777776   777777777


Q ss_pred             HHHH-H--HhCCCHHHHHHHHHHHHhh
Q 025537          221 QAAC-L--FSLGMENDARETLKDGTNL  244 (251)
Q Consensus       221 ~g~~-~--~~~~~~~~A~~~~~~al~l  244 (251)
                      +|.+ +  ...+++++|+.+|+++.+.
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~  280 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRAA  280 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence            7777 3  4677777777777777754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.64  E-value=5e-07  Score=79.62  Aligned_cols=97  Identities=14%  Similarity=0.006  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhHHHh----hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCh
Q 025537          144 QETLNSKKHGDTAFR----AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWP  215 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~  215 (251)
                      ..+..+...|..++.    .+++++|+.+|.++++..   ++.+++++|.+|..    .+++++|+..|++|+..  +++
T Consensus        73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~  147 (490)
T 2xm6_A           73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRD  147 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence            457788999999999    999999999999998864   78899999999998    88999999999999875  589


Q ss_pred             HHHHHHHHHHHh----CCCHHHHHHHHHHHHhhh
Q 025537          216 TALYLQAACLFS----LGMENDARETLKDGTNLE  245 (251)
Q Consensus       216 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~  245 (251)
                      .+++.+|.+|..    .+++++|+.+|+++++.+
T Consensus       148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~  181 (490)
T 2xm6_A          148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG  181 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            999999999998    899999999999998763

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.57  E-value=2.5e-07  Score=68.47  Aligned_cols=80  Identities=13%  Similarity=-0.013  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhHHHhhc---CHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 025537          145 ETLNSKKHGDTAFRAK---DFSTAIDCYTQFIDGG-TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYL  220 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  220 (251)
                      +.+..++.|..+.+.+   ++++|+..++..++.+ |..+.++++++|.+|+++|+|.+|+.+++++++++|+|..+...
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            3567778888898877   7789999999999998 73278999999999999999999999999999999999998876


Q ss_pred             HHHH
Q 025537          221 QAAC  224 (251)
Q Consensus       221 ~g~~  224 (251)
                      +-.+
T Consensus       111 k~~i  114 (152)
T 1pc2_A          111 ERLI  114 (152)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.53  E-value=7.5e-07  Score=78.03  Aligned_cols=94  Identities=10%  Similarity=-0.096  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhH-H--HhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhhCCCCh
Q 025537          144 QETLNSKKHGDT-A--FRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND-----MPQEALGDAMQAQVVSPDWP  215 (251)
Q Consensus       144 ~~a~~~~~~g~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~~~p~~~  215 (251)
                      ..+..+...|.. +  ...+++++|+.+|+++++..   ++.+++++|.+|. .|     ++++|+..|++|.   |.++
T Consensus       246 g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~  318 (452)
T 3e4b_A          246 GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREV  318 (452)
T ss_dssp             GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCH
T ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCH
Confidence            445666677776 3  45777788888888777654   6777777777776 44     7777888887777   7777


Q ss_pred             HHHHHHHHHHHh----CCCHHHHHHHHHHHHhh
Q 025537          216 TALYLQAACLFS----LGMENDARETLKDGTNL  244 (251)
Q Consensus       216 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~l  244 (251)
                      .+++++|.+|..    ..++++|+.+|+++.+.
T Consensus       319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAARN  351 (452)
T ss_dssp             HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence            788888777766    33777777777777764

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.49  E-value=8.6e-07  Score=64.74  Aligned_cols=79  Identities=14%  Similarity=-0.009  Sum_probs=70.8

Q ss_pred             hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----CCCHHHH
Q 025537          159 AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS----LGMENDA  234 (251)
Q Consensus       159 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A  234 (251)
                      .+++++|+.+|.++.+.... .  +.  +|.+|...+.+++|+..|++|.+.  .++.+++++|.+|..    .+++++|
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~-~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEM-F--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCT-T--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCH-h--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence            36889999999999998743 3  33  999999999999999999999997  699999999999999    8999999


Q ss_pred             HHHHHHHHhh
Q 025537          235 RETLKDGTNL  244 (251)
Q Consensus       235 ~~~~~~al~l  244 (251)
                      +.+|+++.+.
T Consensus        81 ~~~~~~Aa~~   90 (138)
T 1klx_A           81 AQYYSKACGL   90 (138)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            9999999876

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.41  E-value=6.9e-07  Score=76.82  Aligned_cols=100  Identities=9%  Similarity=0.020  Sum_probs=74.3

Q ss_pred             HHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 025537          149 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS----------------PTVYARRCLSYLMNDMPQEALGDAMQAQVVSP  212 (251)
Q Consensus       149 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  212 (251)
                      ..++|..+++.|+|++|++.|.++++..|...                ..++.++|.+|..+|+|++|++.+.+++.+.+
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            45677778888899999999999888876411                13577888888899999999998888888766


Q ss_pred             CChHH------HHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          213 DWPTA------LYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       213 ~~~~~------~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ...++      +..+|.++...|++++|+..+++++.+.++.
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  128 (434)
T 4b4t_Q           87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE  128 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred             HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence            65433      3445666677777777887777777766653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.41  E-value=1.4e-06  Score=62.16  Aligned_cols=88  Identities=9%  Similarity=0.029  Sum_probs=64.4

Q ss_pred             CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhC-C-CChHHHHHHHHHHHhCCCHHHHH
Q 025537          161 DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQE---ALGDAMQAQVVS-P-DWPTALYLQAACLFSLGMENDAR  235 (251)
Q Consensus       161 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~~g~~~~~~~~~~~A~  235 (251)
                      ....+...|.+.+..++. +..+-|+.|.++.+..+...   +|..++..++.+ | ..-+.+|.+|..++++|+|++|.
T Consensus        16 ~l~~~~~~y~~e~~~~~~-s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            334555666666665654 77778888888887776555   777777777766 4 56677888888888888888888


Q ss_pred             HHHHHHHhhhhhcc
Q 025537          236 ETLKDGTNLEAKKN  249 (251)
Q Consensus       236 ~~~~~al~l~P~~~  249 (251)
                      .+++.+|+++|+|.
T Consensus        95 ~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           95 KYVRGLLQTEPQNN  108 (126)
T ss_dssp             HHHHHHHHHCTTCH
T ss_pred             HHHHHHHHhCCCCH
Confidence            88888888888763

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.38  E-value=1.7e-06  Score=83.91  Aligned_cols=93  Identities=16%  Similarity=0.139  Sum_probs=78.3

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--------------
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP--------------  212 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------------  212 (251)
                      ..+...|..++..|+|++|+.+|++|         ..|..++.++.++|++++|++.+.+|...++              
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHH
Confidence            45668999999999999999999996         3688899999999999999999999855443              


Q ss_pred             -----------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          213 -----------DWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       213 -----------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                                 .+++.+..++..|...|.|++|+..++++|.++|.+
T Consensus      1267 ~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A         1267 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred             HHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence                       244556677888999999999999999999999764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.38  E-value=3.3e-06  Score=81.97  Aligned_cols=89  Identities=17%  Similarity=0.206  Sum_probs=72.8

Q ss_pred             HhHHHhhcCHHHHHHHHHHHH--------------------ccC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537          153 GDTAFRAKDFSTAIDCYTQFI--------------------DGG--TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV  210 (251)
Q Consensus       153 g~~~~~~~~~~~A~~~~~~al--------------------~~~--p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  210 (251)
                      |..+...|.|++|+.+|+++-                    +..  .+ .+.+|+++|.++...|++++|+..|.+|   
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn-~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCN-EPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            666666666666666665532                    111  23 6789999999999999999999999886   


Q ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          211 SPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       211 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                        +++.+|++.|.++..+|+|++|+++|..|.+.+++
T Consensus      1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence              89999999999999999999999999999988754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.35  E-value=3.7e-06  Score=72.20  Aligned_cols=103  Identities=7%  Similarity=-0.016  Sum_probs=87.3

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCC
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV------SPDW  214 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~  214 (251)
                      +......|..+...|++++|+.+|++++...+.     ..+.++.++|.+|..+|+|.+|+..+.+++..      .|..
T Consensus        95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~  174 (434)
T 4b4t_Q           95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL  174 (434)
T ss_dssp             HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence            345566788888899999999999999875321     14678999999999999999999999999876      3445


Q ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          215 PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ..++...|.+|..+|+|++|...|++++.+.+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  208 (434)
T 4b4t_Q          175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSI  208 (434)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence            7899999999999999999999999999987753

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.34  E-value=4.6e-06  Score=69.16  Aligned_cols=103  Identities=12%  Similarity=-0.025  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC---CCHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhhCCCChH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM---VSPTVYARRCLS--YLMND--MPQEALGDAMQAQVVSPDWPT  216 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~a~~--~~~~~--~~~~A~~~~~~al~~~p~~~~  216 (251)
                      ...+.....+..+.+.|+++.|...+.+..+.+|+   .+..+..+++.+  .+..|  ++++|+..|+++....|++..
T Consensus       134 ~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~  213 (310)
T 3mv2_B          134 GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKT  213 (310)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCccc
Confidence            34555556666666666666666666666666651   012333334333  44444  666667667666666665222


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          217 ALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       217 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ....+. ++..+|++++|...++..+++.|+
T Consensus       214 ~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~  243 (310)
T 3mv2_B          214 QLGLLN-LHLQQRNIAEAQGIVELLLSDYYS  243 (310)
T ss_dssp             HHHHHH-HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred             HHHHHH-HHHHcCCHHHHHHHHHHHHHhccc
Confidence            222222 666777777777777766666665

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.23  E-value=9.6e-07  Score=76.59  Aligned_cols=93  Identities=15%  Similarity=0.109  Sum_probs=62.4

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      +..+...|..+.+.|+|++|++.|.+|     . ++..|...+.++...|+|+.|.....+ |...   ++-...+...|
T Consensus       148 a~n~~~LA~~L~~Lg~yq~AVea~~KA-----~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~---ad~l~~lv~~Y  217 (449)
T 1b89_A          148 VSNFGRLASTLVHLGEYQAAVDGARKA-----N-STRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYY  217 (449)
T ss_dssp             TTCHHHHHHHHHTTTCHHHHHHHHHHH-----T-CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC---HHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhccHHHHHHHHHHc-----C-CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC---HhhHHHHHHHH
Confidence            455666666666666666666666666     2 556666666666666666666554443 3333   33344567889


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhc
Q 025537          226 FSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      ...|++++|+..+++++.+++.+
T Consensus       218 ek~G~~eEai~lLe~aL~le~ah  240 (449)
T 1b89_A          218 QDRGYFEELITMLEAALGLERAH  240 (449)
T ss_dssp             HHTTCHHHHHHHHHHHTTSTTCC
T ss_pred             HHCCCHHHHHHHHHHHhCCcHHH
Confidence            99999999999999999998653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.23  E-value=6.3e-06  Score=68.33  Aligned_cols=96  Identities=14%  Similarity=0.016  Sum_probs=78.8

Q ss_pred             HHHHHHhHHHhhc--CHHHHHHHHHHHHccCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----------CCCC
Q 025537          148 NSKKHGDTAFRAK--DFSTAIDCYTQFIDGGTM-VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV----------SPDW  214 (251)
Q Consensus       148 ~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------~p~~  214 (251)
                      .....|...+..|  ++.+|+..|+++.+..|+ .....+.+   +++++|+|++|..+++.+++.          +|++
T Consensus       178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~  254 (310)
T 3mv2_B          178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK  254 (310)
T ss_dssp             HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence            3333454466566  999999999999888774 12344555   899999999999999988877          5999


Q ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          215 PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +.++.++..+...+|+  +|...+.++.+++|++
T Consensus       255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h  286 (310)
T 3mv2_B          255 PTFLANQITLALMQGL--DTEDLTNQLVKLDHEH  286 (310)
T ss_dssp             HHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence            9999999999999998  8999999999999985

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.19  E-value=9e-06  Score=70.52  Aligned_cols=86  Identities=14%  Similarity=0.041  Sum_probs=55.4

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  226 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  226 (251)
                      ..+...|..++..|+|++|+.+|+++         ..|..+|.|+.++|+|++|++.+.+|     ++++.|...+.++.
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv  188 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV  188 (449)
T ss_dssp             --------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH
Confidence            37778888888888888888888876         23777888888888888888888887     47788888888888


Q ss_pred             hCCCHHHHHHHHHHHHhhhhh
Q 025537          227 SLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       227 ~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ..|+|+.|..+... |.++|+
T Consensus       189 ~~~ef~lA~~~~l~-L~~~ad  208 (449)
T 1b89_A          189 DGKEFRLAQMCGLH-IVVHAD  208 (449)
T ss_dssp             HTTCHHHHHHTTTT-TTTCHH
T ss_pred             HcCcHHHHHHHHHH-HHhCHh
Confidence            88888888766654 445554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.16  E-value=4.4e-06  Score=72.79  Aligned_cols=75  Identities=9%  Similarity=0.035  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG--------GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV----  210 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----  210 (251)
                      +..+..+.+.|.+|..+|+|++|+.+|.++++.        .|+ -+..++|+|.+|..+|+|++|+..+++|+++    
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~-~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~  415 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN-VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA  415 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999965        333 5678999999999999999999999999885    


Q ss_pred             -CCCChHHH
Q 025537          211 -SPDWPTAL  218 (251)
Q Consensus       211 -~p~~~~~~  218 (251)
                       -|++|..-
T Consensus       416 lG~~Hp~~~  424 (433)
T 3qww_A          416 HGKDHPYIS  424 (433)
T ss_dssp             TCTTCHHHH
T ss_pred             cCCCChHHH
Confidence             57776543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.12  E-value=2.1e-05  Score=58.63  Aligned_cols=92  Identities=15%  Similarity=0.027  Sum_probs=71.6

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccC---CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---C---
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGG---TMV-----SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP---D---  213 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~---  213 (251)
                      .+++....++..|.|+-|+...+.++.+.   |+.     -..++..+|.+++..++|.+|...|++||.+.-   .   
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45567777888999999999998877653   220     124678889999999999999999999876421   1   


Q ss_pred             -------------------ChHHHHHHHHHHHhCCCHHHHHHHHH
Q 025537          214 -------------------WPTALYLQAACLFSLGMENDARETLK  239 (251)
Q Consensus       214 -------------------~~~~~~~~g~~~~~~~~~~~A~~~~~  239 (251)
                                         ..+..|+.+.||..++++++|+..++
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le  146 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD  146 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence                               12688999999999999999998765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.10  E-value=5.5e-06  Score=72.15  Aligned_cols=83  Identities=11%  Similarity=-0.005  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG--------GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV----  210 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----  210 (251)
                      +..+..+.+.|..|..+|+|++|+.+|.++++.        .|. -+..++|+|.+|..+|++++|+..+++|+++    
T Consensus       326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~-~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~  404 (429)
T 3qwp_A          326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV-RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT  404 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            455778899999999999999999999999965        233 4578999999999999999999999999885    


Q ss_pred             -CCCChHH---HHHHHHHHH
Q 025537          211 -SPDWPTA---LYLQAACLF  226 (251)
Q Consensus       211 -~p~~~~~---~~~~g~~~~  226 (251)
                       -|++|..   +.+++.+..
T Consensus       405 lG~~Hp~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          405 HGREHSLIEDLILLLEECDA  424 (429)
T ss_dssp             TCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHH
Confidence             6777544   344555544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.06  E-value=3.5e-05  Score=62.87  Aligned_cols=105  Identities=9%  Similarity=-0.049  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHhHHHh------hcCHHHHHH-----HHHHHHc-cCCCCCHHHHHHHHHHHHh---c--C------CHHH
Q 025537          143 MQETLNSKKHGDTAFR------AKDFSTAID-----CYTQFID-GGTMVSPTVYARRCLSYLM---N--D------MPQE  199 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~------~~~~~~A~~-----~~~~al~-~~p~~~~~~~~~~a~~~~~---~--~------~~~~  199 (251)
                      +..|..++.+|..|..      ...|.+++.     -+..++. .+|+ +..+++-.|.+...   .  |      ....
T Consensus       103 ~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~  181 (301)
T 3u64_A          103 YSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRV-DVGTLYWVGTGYVAAFALTPLGSALPDTVHA  181 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGG-GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCcc-ccHHHHHHHHHHHHHHhcCCCChHHHHhHHH
Confidence            3455566655555432      134444443     2345553 4555 77776666665543   2  2      3578


Q ss_pred             HHHHHHHHHhhCCC--ChHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhhhhhc
Q 025537          200 ALGDAMQAQVVSPD--WPTALYLQAACLFSL-----GMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       200 A~~~~~~al~~~p~--~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~l~P~~  248 (251)
                      |...+++|++++|+  +..+|..+|..|...     |+.+.|.++|++||+++|+.
T Consensus       182 A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~  237 (301)
T 3u64_A          182 AVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH  237 (301)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999  566999999999996     99999999999999999975

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.99  E-value=1.7e-05  Score=67.04  Aligned_cols=75  Identities=17%  Similarity=0.062  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY  219 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  219 (251)
                      +..+..+...|..++..|++++|+..+++|++++|  +..+|..+|.++...|++++|++.|++|+.++|..+..++
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~--s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~  348 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM--SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYW  348 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHH
Confidence            34466777788888889999999999999999996  5778889999999999999999999999999998765433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.89  E-value=8.3e-05  Score=52.99  Aligned_cols=79  Identities=10%  Similarity=-0.064  Sum_probs=65.1

Q ss_pred             HHHHHHHHhHHHhhcCHHH---HHHHHHHHHccC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFST---AIDCYTQFIDGG-TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~-p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+.-++.|-.+.+.++...   +|.+++..++.+ |...-.+++.+|..++++|+|.+|+.+++..|+++|+|..+.-.+
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4555667777777666655   999999999887 532678899999999999999999999999999999999887666


Q ss_pred             HHH
Q 025537          222 AAC  224 (251)
Q Consensus       222 g~~  224 (251)
                      ..+
T Consensus       115 ~~i  117 (126)
T 1nzn_A          115 RLI  117 (126)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.75  E-value=0.00015  Score=51.87  Aligned_cols=78  Identities=5%  Similarity=-0.165  Sum_probs=46.3

Q ss_pred             HHHHHHHHhHHHhhcC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKD---FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      ++.-++-+-.+.+.++   ..++|..++..++.+|...-+.++.+|..++++|+|.+|..+++.++++.|+|..+.-...
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            4445555555544433   3456666666666665324566666666666666666666666666666666666654444


Q ss_pred             H
Q 025537          223 A  223 (251)
Q Consensus       223 ~  223 (251)
                      .
T Consensus       120 ~  120 (134)
T 3o48_A          120 M  120 (134)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.68  E-value=0.00028  Score=51.09  Aligned_cols=78  Identities=5%  Similarity=-0.148  Sum_probs=51.8

Q ss_pred             HHHHHHHHhHHHhhcCH---HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDF---STAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  222 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g  222 (251)
                      .+.-++-+-.+.+..+-   .++|.+++..++.+|...-+.++.+|..++++|+|.+|..+++..|++.|+|..+.-...
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            45556666666554443   457777777777666435566777777777777777777777777777777766655444


Q ss_pred             H
Q 025537          223 A  223 (251)
Q Consensus       223 ~  223 (251)
                      .
T Consensus       119 ~  119 (144)
T 1y8m_A          119 M  119 (144)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.61  E-value=0.001  Score=48.24  Aligned_cols=71  Identities=8%  Similarity=-0.013  Sum_probs=63.6

Q ss_pred             CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhhCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          179 VSPTVYARRCLSYLMNDMP---QEALGDAMQAQVVSP-DWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       179 ~~~~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .+...-|+.|-++.+..+.   .++|..++..++-.| ..-+.+|.+|..++++|+|++|..+.+.+|+++|+|.
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~  111 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  111 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence            3788889999999887754   679999999999998 5689999999999999999999999999999999874

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=97.59  E-value=1.6e-05  Score=66.05  Aligned_cols=72  Identities=31%  Similarity=0.549  Sum_probs=54.9

Q ss_pred             CEEEeecCCC-CCchh------------hhHHHHcCCccccccccccCCCCHHHHHHHHHHHhcccCcCCCCCCCHHHHH
Q 025537            1 MLLDLLSGKH-IPPSH------------ALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV   67 (251)
Q Consensus         1 vlLEl~tgr~-~~~~~------------~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~va~~C~~~~p~~RP~m~~v~   67 (251)
                      +|+||+||+. .+...            +...........+++..+...+.......+..+..+|++.+|..||++.+|+
T Consensus       224 il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell  303 (326)
T 3uim_A          224 MLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVV  303 (326)
T ss_dssp             HHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHH
T ss_pred             HHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHH
Confidence            3578899998 65221            1122223345677788887777888888899999999999999999999999


Q ss_pred             HHHHh
Q 025537           68 ISLMS   72 (251)
Q Consensus        68 ~~L~~   72 (251)
                      +.|++
T Consensus       304 ~~L~~  308 (326)
T 3uim_A          304 RMLEG  308 (326)
T ss_dssp             HHHHT
T ss_pred             HHhcC
Confidence            99975

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=97.57  E-value=3.2e-05  Score=64.15  Aligned_cols=76  Identities=17%  Similarity=0.289  Sum_probs=56.6

Q ss_pred             CEEEeecCCC-CCchh----------hhHHHHcCCccccccccccCCCCHHHHHHHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537            1 MLLDLLSGKH-IPPSH----------ALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus         1 vlLEl~tgr~-~~~~~----------~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +|+||+||+. .....          .......+.+..++++.+......+....+..+..+|++.+|..||++.++++.
T Consensus       230 il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  309 (321)
T 2qkw_B          230 VLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWK  309 (321)
T ss_dssp             HHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            3678899987 43211          122233445667888887766677777888899999999999999999999999


Q ss_pred             HHhhhhh
Q 025537           70 LMSLQKE   76 (251)
Q Consensus        70 L~~~~~~   76 (251)
                      |+.+.+.
T Consensus       310 L~~~l~~  316 (321)
T 2qkw_B          310 LEYALRL  316 (321)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhhc
Confidence            9876543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.54  E-value=0.00087  Score=47.92  Aligned_cols=72  Identities=8%  Similarity=-0.016  Sum_probs=63.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhhCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          178 MVSPTVYARRCLSYLMNDMP---QEALGDAMQAQVVSP-DWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       178 ~~~~~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ..++..-|+.|-++.+..+.   .++|..++..++.+| ..-+.+|.+|..++++|+|++|..+.+.+|+++|+|.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~  112 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  112 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence            34788888888888887654   679999999999998 4589999999999999999999999999999999975

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=97.49  E-value=1.9e-05  Score=65.51  Aligned_cols=37  Identities=14%  Similarity=0.261  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           40 DEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        40 ~~~~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +....+.++..+|++.+|..||||.+|++.|+.+.+.
T Consensus       262 ~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          262 EALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             HHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence            4556678899999999999999999999999988654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.42  E-value=0.0057  Score=52.29  Aligned_cols=101  Identities=9%  Similarity=0.006  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----C--C--------------HHHHHHHHHHHHhcCCHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----V--S--------------PTVYARRCLSYLMNDMPQEAL  201 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~--~--------------~~~~~~~a~~~~~~~~~~~A~  201 (251)
                      ....+.+...|......|+.+.|+..+.+|+.+-..     .  .              ..+...++.++...|++.+|+
T Consensus       112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~  191 (388)
T 2ff4_A          112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI  191 (388)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            334455666777777789999999999999977311     0  0              123455678888999999999


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 025537          202 GDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTN  243 (251)
Q Consensus       202 ~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  243 (251)
                      ..+..++..+|-+-.+|..+-.+++..|+..+|+..|+++-+
T Consensus       192 ~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          192 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998754

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.41  E-value=0.00073  Score=62.06  Aligned_cols=82  Identities=7%  Similarity=-0.050  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 025537          163 STAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEAL-GDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDG  241 (251)
Q Consensus       163 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a  241 (251)
                      +.....|++||...|. ++.+|+..+......|+.++|+ ..+++|+...|.+...|+..+......|+++.|...|+++
T Consensus       326 ~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            4466889999999998 9999999999999999999997 9999999999999999999999999999999999999999


Q ss_pred             Hhhh
Q 025537          242 TNLE  245 (251)
Q Consensus       242 l~l~  245 (251)
                      ++.-
T Consensus       405 l~~l  408 (679)
T 4e6h_A          405 IDRI  408 (679)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9863

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.40  E-value=0.0013  Score=60.53  Aligned_cols=99  Identities=8%  Similarity=-0.022  Sum_probs=83.0

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM-PQEALGDAMQAQVVSPDWPTALYLQAACLF  226 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  226 (251)
                      .+...++...+.|+.+.|...|.+|++..|.....+|...|....+.+. ++.|...|+.+++..|+.+..|...+....
T Consensus       436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~  515 (679)
T 4e6h_A          436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI  515 (679)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            4555566667788999999999999988332256778777777777654 899999999999999999999988888888


Q ss_pred             hCCCHHHHHHHHHHHHhhhh
Q 025537          227 SLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       227 ~~~~~~~A~~~~~~al~l~P  246 (251)
                      ..|+.+.|...|++|+...|
T Consensus       516 ~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          516 YVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHTCHHHHHHHHHHHTTTSS
T ss_pred             hCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999887

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=97.35  E-value=2.7e-05  Score=64.70  Aligned_cols=68  Identities=19%  Similarity=0.347  Sum_probs=43.6

Q ss_pred             CEEEeecCCC-CCchh----hhHHHHcCCcccccccccc---CCCCHHHHHHHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537            1 MLLDLLSGKH-IPPSH----ALDLIRSKNFLLLMDSALE---GHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus         1 vlLEl~tgr~-~~~~~----~~~~~~~~~~~~~~d~~l~---~~~~~~~~~~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      ||.||+||+. .....    +...+..+    ..+|.+.   ...+    ..+.++..+|++.+|..||+|.+|+..|+.
T Consensus       226 vl~Elltg~~Pf~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~----~~l~~li~~cl~~dP~~RPs~~ei~~~Le~  297 (307)
T 3omv_A          226 VLYELMTGELPYSHINNRDQIIFMVGRG----YASPDLSKLYKNCP----KAMKRLVADCVKKVKEERPLFPQILSSIEL  297 (307)
T ss_dssp             HHHHHHHSSCTTTTCCCHHHHHHHHHTT----CCCCCSTTSCTTSC----HHHHHHHHHHTCSSSTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCChHHHHHHHHhcC----CCCCCcccccccch----HHHHHHHHHHcCCCHhHCcCHHHHHHHHHH
Confidence            4678999998 54211    22333333    1223221   1222    235567789999999999999999999988


Q ss_pred             hhhh
Q 025537           73 LQKE   76 (251)
Q Consensus        73 ~~~~   76 (251)
                      ++..
T Consensus       298 l~~~  301 (307)
T 3omv_A          298 LQHS  301 (307)
T ss_dssp             HHTT
T ss_pred             Hhcc
Confidence            7654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.24  E-value=0.0017  Score=48.34  Aligned_cols=82  Identities=17%  Similarity=0.118  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC---CCC---------------------CHHHHHHHHHHHHhcCCHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG---TMV---------------------SPTVYARRCLSYLMNDMPQ  198 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~---------------------~~~~~~~~a~~~~~~~~~~  198 (251)
                      ...++.+...|+.+|.+++|..|...|.+||...   +..                     ..++.+..+.||++++++.
T Consensus        60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~  139 (167)
T 3ffl_A           60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK  139 (167)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence            3567889999999999999999999999997441   110                     1268899999999999999


Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          199 EALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       199 ~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      +|+...+. |-..-..++.-.-+|..|
T Consensus       140 ~Ai~~Le~-Ip~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          140 DAIAILDG-IPSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHHT-SCGGGCCHHHHHHHHHHC
T ss_pred             HHHHHHhc-CCchhcCHHHHHHHHHHh
Confidence            99998665 222334667666666654

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=97.14  E-value=0.00025  Score=59.47  Aligned_cols=32  Identities=22%  Similarity=0.387  Sum_probs=28.3

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+..+|++.+|+.||+|.+|++.|+.+.+.
T Consensus       289 ~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~  320 (329)
T 4aoj_A          289 VYAIMRGCWQREPQQRHSIKDVHARLQALAQA  320 (329)
T ss_dssp             HHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence            56677899999999999999999999988655

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.002  Score=59.59  Aligned_cols=59  Identities=15%  Similarity=0.019  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 025537          183 VYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDG  241 (251)
Q Consensus       183 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a  241 (251)
                      ++.--+..++..|+|+-|+..+++|+...|.....|+.++.+|..+|+|+.|+-.+.-|
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34444666777899999999999999999999999999999999999999999877655

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=96.91  E-value=0.00047  Score=56.51  Aligned_cols=73  Identities=18%  Similarity=0.355  Sum_probs=49.5

Q ss_pred             CEEEeecCCC-CCchh-------hhHHHHcC--CccccccccccCCCCHHHHHHHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537            1 MLLDLLSGKH-IPPSH-------ALDLIRSK--NFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL   70 (251)
Q Consensus         1 vlLEl~tgr~-~~~~~-------~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~va~~C~~~~p~~RP~m~~v~~~L   70 (251)
                      +|+||+||+. .+...       ....+...  .+.+.+++.+.. ........+..+...|++.+|..||++.++++.|
T Consensus       223 il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L  301 (307)
T 2nru_A          223 VLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMND-ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL  301 (307)
T ss_dssp             HHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSC-CCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             HHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccccc-cchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            3568889988 54221       11222221  244556666543 3455566778899999999999999999999999


Q ss_pred             Hhhh
Q 025537           71 MSLQ   74 (251)
Q Consensus        71 ~~~~   74 (251)
                      +.+.
T Consensus       302 ~~l~  305 (307)
T 2nru_A          302 QEMT  305 (307)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            8764

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=96.85  E-value=0.00054  Score=56.59  Aligned_cols=67  Identities=24%  Similarity=0.330  Sum_probs=42.8

Q ss_pred             CEEEeec-CCC-CCch---hhhHHHHcCCccccccccccCCCCHHHHHHHHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537            1 MLLDLLS-GKH-IPPS---HALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus         1 vlLEl~t-gr~-~~~~---~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      ||.||+| |+. ....   .+...+..|...     ......+.    .+.++..+|++.+|+.||+|.+|+..|+.+.+
T Consensus       219 vl~Ellt~G~~Pf~~~~~~~~~~~i~~~~~~-----~~p~~~~~----~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~  289 (299)
T 4asz_A          219 VLWEIFTYGKQPWYQLSNNEVIECITQGRVL-----QRPRTCPQ----EVYELMLGCWQREPHMRKNIKGIHTLLQNLAK  289 (299)
T ss_dssp             HHHHHHTTTCCTTTTSCHHHHHHHHHHTCCC-----CCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCCCCHHHHHHHHHcCCCC-----CCCccchH----HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence            3678888 777 4321   133344444221     11112232    35567789999999999999999999988765


Q ss_pred             h
Q 025537           76 E   76 (251)
Q Consensus        76 ~   76 (251)
                      .
T Consensus       290 ~  290 (299)
T 4asz_A          290 A  290 (299)
T ss_dssp             H
T ss_pred             c
Confidence            4

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.83  E-value=0.0091  Score=43.66  Aligned_cols=84  Identities=15%  Similarity=0.075  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHccCCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHH
Q 025537          163 STAIDCYTQFIDGGTMV-------SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDAR  235 (251)
Q Consensus       163 ~~A~~~~~~al~~~p~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~  235 (251)
                      ++-++.|++|+..-|-.       ...+|.+.| .+..+++.++|...|+.|+.+...+++.|...|..-...|+...|.
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR  114 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK  114 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence            77889999999876631       123444444 3456789999999999999998889999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 025537          236 ETLKDGTNLEAK  247 (251)
Q Consensus       236 ~~~~~al~l~P~  247 (251)
                      +.+.+|+.+.|.
T Consensus       115 kILg~AiG~~~k  126 (161)
T 4h7y_A          115 QLLQKAVERGAV  126 (161)
T ss_dssp             HHHHHHHHTTCB
T ss_pred             HHHHHHhccCCC
Confidence            999999999985

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.79  E-value=0.025  Score=42.29  Aligned_cols=95  Identities=9%  Similarity=-0.039  Sum_probs=74.2

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--hh-------------
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQ--VV-------------  210 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~-------------  210 (251)
                      .+.-.-.+..++-.|+|..|+-.+.+   ++   ..+..+..+.||.++++|+.|+...++.+  +.             
T Consensus        33 ~eY~lL~~I~LyyngEY~R~Lf~L~~---lN---T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~f  106 (242)
T 3kae_A           33 PEYRMLMSIVLYLNGEYTRALFHLHK---LN---TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEM  106 (242)
T ss_dssp             -CTHHHHHHHHHHTTCHHHHHHHHHT---CC---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTT
T ss_pred             hHHHhhhhhhhhhcchHhHHHHHHHh---cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccee
Confidence            34455678888999999998877654   33   56677778999999999999999999998  22             


Q ss_pred             --CCCChHHH-HHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          211 --SPDWPTAL-YLQAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       211 --~p~~~~~~-~~~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                        +|.+-+.+ ..+|..+.+.|+.+||+.+|.......|
T Consensus       107 fvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A          107 FVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             eeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence              34444444 4569999999999999999998877665

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=96.70  E-value=7.6e-05  Score=62.01  Aligned_cols=30  Identities=20%  Similarity=0.241  Sum_probs=26.2

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+.++..+|++.+|..||+|.+|++.|+..
T Consensus       275 ~~~~li~~C~~~dP~~RPs~~ei~~~L~a~  304 (308)
T 4gt4_A          275 WVYALMIECWNEFPSRRPRFKDIHSRLRAW  304 (308)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            356778899999999999999999999754

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.70  E-value=0.036  Score=48.98  Aligned_cols=95  Identities=13%  Similarity=0.027  Sum_probs=78.8

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV--SPDWPTALYLQAACL  225 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~  225 (251)
                      .+...-..+.+.|++++|...|.+..+..-..+...|+.+-.+|.+.|++++|...+.+-.+.  .| +...|..+-.+|
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~  185 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVS  185 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHH
Confidence            344556678889999999999999776532226888999999999999999999999987764  45 566788899999


Q ss_pred             HhCCCHHHHHHHHHHHHh
Q 025537          226 FSLGMENDARETLKDGTN  243 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~  243 (251)
                      ...|++++|...|++.-+
T Consensus       186 ~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          186 MDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             hhCCCHHHHHHHHHHHHH
Confidence            999999999999988644

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.0053  Score=56.77  Aligned_cols=61  Identities=8%  Similarity=-0.063  Sum_probs=56.3

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQA  207 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  207 (251)
                      +.-+..++..+..+|+|+-|+.+-.+|+...|. ....|+.++.||..+|+|+.|+-.++.+
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            456778899999999999999999999999998 9999999999999999999999877765

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.60  E-value=0.027  Score=45.23  Aligned_cols=93  Identities=10%  Similarity=0.046  Sum_probs=75.8

Q ss_pred             hHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH---------------
Q 025537          154 DTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL---------------  218 (251)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---------------  218 (251)
                      ..+++.|+.++|+......|+.+|. ++.....+-..+.-.|+|++|...++.+.+++|+....-               
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~   83 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   83 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999998 999999999999999999999999999999999875442               


Q ss_pred             --------------------HHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          219 --------------------YLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       219 --------------------~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                                          ...+......|+.++|...-.++++.-|.
T Consensus        84 vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           84 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  132 (273)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence                                11233344567788888887778777664

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=96.45  E-value=0.0013  Score=55.50  Aligned_cols=31  Identities=26%  Similarity=0.401  Sum_probs=26.6

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      +.++..+|++.+|..||++.++++.|..+.+
T Consensus       317 ~~~li~~c~~~dP~~RPt~~eil~~L~~llq  347 (353)
T 4ase_A          317 MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  347 (353)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcChhHCcCHHHHHHHHHHHHH
Confidence            4566679999999999999999999987644

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.24  E-value=0.029  Score=49.51  Aligned_cols=79  Identities=14%  Similarity=-0.025  Sum_probs=72.5

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  227 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~  227 (251)
                      .+...|+.......+..|..+|.+|+.+.|+ +...|+.+|.+....|+.-+|+-+|-+++....-++.+.-++...+..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            5668899998889999999999999999998 999999999999999999999999999999888899999888887754

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=96.24  E-value=0.0017  Score=53.79  Aligned_cols=36  Identities=17%  Similarity=0.208  Sum_probs=31.0

Q ss_pred             HHHHHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           41 EGTELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        41 ~~~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      ....+..+..+|++.+|..||++.+|++.|+.+.+.
T Consensus       284 ~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~  319 (322)
T 3soc_A          284 GMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL  319 (322)
T ss_dssp             HHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            344577788899999999999999999999988754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.11  E-value=0.071  Score=46.94  Aligned_cols=93  Identities=14%  Similarity=0.103  Sum_probs=74.2

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND-MPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      ..+..-+....+.++.+.|...|.+| .. |......|...|...+..+ +++.|...|+.+++..|+.+..+...+...
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e  364 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            34455555666778899999999999 43 4336778877777777666 699999999999999999998888888878


Q ss_pred             HhCCCHHHHHHHHHHH
Q 025537          226 FSLGMENDARETLKDG  241 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~a  241 (251)
                      ...|+.+.|...|+++
T Consensus       365 ~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          365 LRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHTCHHHHHHHHHHS
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            8889999998888876

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=95.90  E-value=0.0006  Score=56.66  Aligned_cols=33  Identities=18%  Similarity=0.528  Sum_probs=28.6

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+..+|++.+|..||++.+++..|..+...
T Consensus       247 ~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~  279 (327)
T 3poz_A          247 DVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             HHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence            466778899999999999999999999887554

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.79  E-value=0.071  Score=45.53  Aligned_cols=93  Identities=9%  Similarity=-0.117  Sum_probs=73.3

Q ss_pred             HHHhHHHhhcCHHHHHHHHHHHHccCC----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC----hHHH
Q 025537          151 KHGDTAFRAKDFSTAIDCYTQFIDGGT----M-VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS---PDW----PTAL  218 (251)
Q Consensus       151 ~~g~~~~~~~~~~~A~~~~~~al~~~p----~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~  218 (251)
                      ..|..++..|+|.+|+..+++.++...    . ...+++..-...|..++++.++...+.+|....   +.+    ....
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            789999999999999999998876421    1 124677888999999999999999999886643   122    3445


Q ss_pred             HHHHHHHH-hCCCHHHHHHHHHHHHh
Q 025537          219 YLQAACLF-SLGMENDARETLKDGTN  243 (251)
Q Consensus       219 ~~~g~~~~-~~~~~~~A~~~~~~al~  243 (251)
                      ..-|..+. ..++|..|..+|-++++
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            55688888 89999999999999874

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.78  E-value=0.035  Score=44.63  Aligned_cols=61  Identities=21%  Similarity=0.021  Sum_probs=57.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          189 LSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       189 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ...++.|+.++|+..+...|+-+|.+++....+...+.-.|+++.|.+.++.+.+++|+..
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            3466889999999999999999999999999999999999999999999999999999854

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.77  E-value=0.031  Score=48.32  Aligned_cols=96  Identities=9%  Similarity=-0.031  Sum_probs=77.9

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCC---hHHHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGT--MVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV---SPDW---PTALY  219 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~---~~~~~  219 (251)
                      .+..+|..+++.|++++|+..|.++.....  ..-..++.....+++..++|..+...+.+|-.+   .+++   .....
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            466899999999999999999999887643  224578888899999999999999999998654   2332   24456


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHh
Q 025537          220 LQAACLFSLGMENDARETLKDGTN  243 (251)
Q Consensus       220 ~~g~~~~~~~~~~~A~~~~~~al~  243 (251)
                      ..|.++...++|.+|...|-.++.
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhc
Confidence            668888999999999999988764

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=95.75  E-value=0.0022  Score=54.00  Aligned_cols=74  Identities=16%  Similarity=0.144  Sum_probs=46.6

Q ss_pred             CEEEeecCCC-CCchh----hhHHH---HcCCccccccccccCCCCHHHHHHHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537            1 MLLDLLSGKH-IPPSH----ALDLI---RSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus         1 vlLEl~tgr~-~~~~~----~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      ||+||+||+. .....    .....   ....+..++|+.+....-+.+   +..+...|++.+|.+||++.++.+.|..
T Consensus       250 ~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~li~~cl~~~p~~RP~~~~l~~~l~~  326 (364)
T 3op5_A          250 CMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGE---IAKYMETVKLLDYTEKPLYENLRDILLQ  326 (364)
T ss_dssp             HHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCTTCCCHH---HHHHHHHHHTCCTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcccccCHHH---HHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            3678899988 54221    11111   112345667766642222233   4556668999999999999999999987


Q ss_pred             hhhhc
Q 025537           73 LQKEA   77 (251)
Q Consensus        73 ~~~~~   77 (251)
                      +....
T Consensus       327 ~~~~~  331 (364)
T 3op5_A          327 GLKAI  331 (364)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            76543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.71  E-value=0.083  Score=46.51  Aligned_cols=102  Identities=7%  Similarity=-0.179  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHH---------------------------------
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCL---------------------------------  189 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~---------------------------------  189 (251)
                      +.....+..-+..+...|+.++|...|.+|+.. |. +..+|...+.                                 
T Consensus       210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~-~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  287 (493)
T 2uy1_A          210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD-GMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDL  287 (493)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-SSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-cHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHH
Confidence            344667778888888889999999999999999 87 5444433222                                 


Q ss_pred             -------HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhhhh
Q 025537          190 -------SYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLG-MENDARETLKDGTNLEAK  247 (251)
Q Consensus       190 -------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~l~P~  247 (251)
                             ...+.+..+.|...|.+| ...+.....|...|..-+..+ +++.|...|+.+++..|+
T Consensus       288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~  352 (493)
T 2uy1_A          288 LRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD  352 (493)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence                   122355677888888888 433334566666666666556 588899999999887665

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=95.66  E-value=0.0031  Score=52.17  Aligned_cols=38  Identities=13%  Similarity=0.225  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           40 DEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        40 ~~~~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      +....+..+..+|++.+|..||++.++++.|+.+....
T Consensus       296 ~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~  333 (337)
T 3mdy_A          296 ECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQ  333 (337)
T ss_dssp             HHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhc
Confidence            34455778889999999999999999999999887654

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=95.60  E-value=0.0012  Score=54.62  Aligned_cols=34  Identities=26%  Similarity=0.463  Sum_probs=28.6

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      .+..+..+|++.+|..||++.++++.|..+....
T Consensus       279 ~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~  312 (318)
T 3lxp_A          279 EVYHLMKNCWETEASFRPTFENLIPILKTVHEKY  312 (318)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhh
Confidence            4566777999999999999999999998876543

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=95.59  E-value=0.0051  Score=51.02  Aligned_cols=37  Identities=14%  Similarity=0.261  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           40 DEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        40 ~~~~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +....+..+..+|++.+|..||++.+|++.|..+...
T Consensus       301 ~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~  337 (342)
T 1b6c_B          301 EALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  337 (342)
T ss_dssp             HHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence            4455677888999999999999999999999988654

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=95.56  E-value=0.0037  Score=50.69  Aligned_cols=31  Identities=26%  Similarity=0.548  Sum_probs=26.9

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQ   74 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~   74 (251)
                      .+..+...|++.+|.+||++.++++.|+.+.
T Consensus       257 ~l~~li~~~l~~~p~~Rps~~ell~~L~~l~  287 (289)
T 3og7_A          257 RMKRLMAECLKKKRDERPSFPRILAEIEELA  287 (289)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence            3556777999999999999999999998764

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=95.44  E-value=0.0066  Score=49.79  Aligned_cols=33  Identities=21%  Similarity=0.452  Sum_probs=28.3

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      +..+..+|++.+|..||++.++++.|..+....
T Consensus       233 l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  265 (307)
T 2eva_A          233 IESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYF  265 (307)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhc
Confidence            556777999999999999999999999876553

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=95.35  E-value=0.0047  Score=49.25  Aligned_cols=30  Identities=23%  Similarity=0.474  Sum_probs=26.2

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQ   74 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~   74 (251)
                      +..+...|++.+|..||++.++++.|..+.
T Consensus       240 ~~~li~~~l~~~p~~Rps~~~il~~L~~l~  269 (271)
T 3kmu_A          240 VSKLMKICMNEDPAKRPKFDMIVPILEKMQ  269 (271)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence            556667899999999999999999998764

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=95.21  E-value=0.0019  Score=53.00  Aligned_cols=32  Identities=22%  Similarity=0.372  Sum_probs=28.2

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+..+|++.+|..||++.++++.|+.+...
T Consensus       252 l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~  283 (310)
T 3s95_A          252 FFPITVRCCDLDPEKRPSFVKLEHWLETLRMH  283 (310)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            55677899999999999999999999988655

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=95.08  E-value=0.0011  Score=56.33  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=29.2

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      .+..+...|++.+|..||++.++++.|..+....
T Consensus       278 ~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~  311 (373)
T 2qol_A          278 ALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNP  311 (373)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCc
Confidence            4667788999999999999999999999876543

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=95.07  E-value=0.0069  Score=49.65  Aligned_cols=32  Identities=28%  Similarity=0.351  Sum_probs=26.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+...|+..+|..||++.++++.|..+...
T Consensus       272 l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~  303 (319)
T 2y4i_B          272 ISDILLFCWAFEQEERPTFTKLMDMLEKLPKR  303 (319)
T ss_dssp             HHHHHHHHHCSSTTTSCCHHHHHHHHTTC---
T ss_pred             HHHHHHHHhcCChhhCcCHHHHHHHHHHHHHh
Confidence            55677799999999999999999999877544

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.07  E-value=0.21  Score=44.05  Aligned_cols=85  Identities=14%  Similarity=0.104  Sum_probs=70.0

Q ss_pred             hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHhCCCHHHHHH
Q 025537          159 AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV--SPDWPTALYLQAACLFSLGMENDARE  236 (251)
Q Consensus       159 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~~A~~  236 (251)
                      .+..++|...|.+..+..-..+...|+.+..+|.+.|++++|+..+++..+.  .| +...|..+-.+|...|++++|..
T Consensus        83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~  161 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYE  161 (501)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHH
Confidence            3457889999988766532236889999999999999999999999987764  45 57778888999999999999999


Q ss_pred             HHHHHHhh
Q 025537          237 TLKDGTNL  244 (251)
Q Consensus       237 ~~~~al~l  244 (251)
                      .|++..+.
T Consensus       162 l~~~M~~~  169 (501)
T 4g26_A          162 VDAHMVES  169 (501)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99987653

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=95.06  E-value=0.0067  Score=48.49  Aligned_cols=29  Identities=17%  Similarity=0.510  Sum_probs=24.9

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      +..+..+|++.+|.+||++.++++.|..+
T Consensus       243 ~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          243 FAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             HHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence            55677799999999999999999998753

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=94.96  E-value=0.0064  Score=49.75  Aligned_cols=33  Identities=15%  Similarity=0.344  Sum_probs=28.5

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      +..+..+|+..+|..||++.++++.|..+....
T Consensus       267 l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~  299 (310)
T 2wqm_A          267 LRQLVNMCINPDPEKRPDVTYVYDVAKRMHACT  299 (310)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhh
Confidence            556677999999999999999999999886654

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=94.84  E-value=0.0051  Score=49.44  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=26.9

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      +..+..+|++.+|..||++.++++.|..+.+..
T Consensus       244 ~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~  276 (284)
T 2a19_B          244 EKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSP  276 (284)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHhhCC
Confidence            445667999999999999999999998876554

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=94.82  E-value=0.0065  Score=49.06  Aligned_cols=29  Identities=24%  Similarity=0.462  Sum_probs=25.2

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      +..+...|++.+|..||++.++++.|+.+
T Consensus       259 l~~li~~~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          259 LRNVIELCWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence            55677799999999999999999998753

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=94.79  E-value=0.017  Score=47.65  Aligned_cols=32  Identities=16%  Similarity=0.363  Sum_probs=27.5

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+...|++.+|..||++.++++.|..+...
T Consensus       246 ~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~  277 (325)
T 3kex_A          246 VYMVMVKCWMIDENIRPTFKELANEFTRMARD  277 (325)
T ss_dssp             TTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            45577799999999999999999999887554

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=94.70  E-value=0.0098  Score=49.65  Aligned_cols=31  Identities=26%  Similarity=0.401  Sum_probs=27.0

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      +..+...|++.+|..||++.++++.|..+..
T Consensus       325 l~~li~~~l~~dP~~Rps~~ell~~L~~~~~  355 (359)
T 3vhe_A          325 MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  355 (359)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCChhhCCCHHHHHHHHHHHHH
Confidence            5566779999999999999999999987754

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.57  E-value=0.16  Score=43.19  Aligned_cols=63  Identities=13%  Similarity=0.191  Sum_probs=56.5

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV  209 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  209 (251)
                      ...+...+..+...|++.+|+..+.+++..+|- +-.+|..+-.+++..|+..+|+..|.++-+
T Consensus       171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445667788889999999999999999999998 889999999999999999999999988643

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.46  E-value=1.1  Score=33.52  Aligned_cols=102  Identities=13%  Similarity=0.099  Sum_probs=75.7

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHc----cCCCC------------CHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFID----GGTMV------------SPT-VYARRCLSYLMNDMPQEALGDAMQAQ  208 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~------------~~~-~~~~~a~~~~~~~~~~~A~~~~~~al  208 (251)
                      +...+-+...+.+.++|.+|+...++.|+    .||+.            +.+ ++..+|...-+.|+-++||.++....
T Consensus        62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf  141 (242)
T 3kae_A           62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF  141 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence            44455667788899999999999999982    23332            334 45557999999999999999999887


Q ss_pred             hhCCCChHH----------------------------------------------------------H--HHHHHHHHhC
Q 025537          209 VVSPDWPTA----------------------------------------------------------L--YLQAACLFSL  228 (251)
Q Consensus       209 ~~~p~~~~~----------------------------------------------------------~--~~~g~~~~~~  228 (251)
                      ..+|-++..                                                          |  -..+.-|+.+
T Consensus       142 ~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~l  221 (242)
T 3kae_A          142 GKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNL  221 (242)
T ss_dssp             HHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHT
T ss_pred             CCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhc
Confidence            765432211                                                          1  2335568889


Q ss_pred             CCHHHHHHHHHHHHhhhhh
Q 025537          229 GMENDARETLKDGTNLEAK  247 (251)
Q Consensus       229 ~~~~~A~~~~~~al~l~P~  247 (251)
                      |-.++...+|...-+.||.
T Consensus       222 g~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          222 GMNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             TCHHHHHHHHHHHHHHSTT
T ss_pred             ccchhHHHHHHHHHhcCCC
Confidence            9999999999988888885

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=94.45  E-value=0.003  Score=52.47  Aligned_cols=32  Identities=19%  Similarity=0.525  Sum_probs=27.8

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+..+|++.+|..||++.++++.|..+...
T Consensus       248 l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  279 (327)
T 3lzb_A          248 VYMIMRKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence            55677799999999999999999999887644

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.37  E-value=0.18  Score=44.49  Aligned_cols=62  Identities=10%  Similarity=-0.147  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537          183 VYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       183 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l  244 (251)
                      .+..+|........+..|..+|.+|+.+.|++...|..+|.+....|+.-+|+-+|.+++-.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            44567777777788899999999999999999999999999999999999999999999864

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=94.22  E-value=0.013  Score=48.90  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=28.0

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      +..+...|++.+|..||++.++++.|..+....
T Consensus       306 l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~  338 (352)
T 2jii_A          306 LQKYLKVVMALTYEEKPPYAMLRNNLEALLQDL  338 (352)
T ss_dssp             HHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhc
Confidence            555667999999999999999999998876553

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.10  E-value=0.46  Score=35.65  Aligned_cols=29  Identities=14%  Similarity=0.053  Sum_probs=25.4

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFI  173 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al  173 (251)
                      ....|+..|......|+++-|..+|.++=
T Consensus        33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           33 DSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            35678999999999999999999999863

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=93.89  E-value=0.0042  Score=54.79  Aligned_cols=31  Identities=16%  Similarity=0.336  Sum_probs=26.7

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQ   74 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~   74 (251)
                      .+..+..+|++.+|..||++.++++.|+.+.
T Consensus       447 ~l~~li~~cl~~dP~~RPs~~el~~~L~~~~  477 (495)
T 1opk_A          447 KVYELMRACWQWNPSDRPSFAEIHQAFETMF  477 (495)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence            3556677999999999999999999998764

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=93.85  E-value=0.0054  Score=50.59  Aligned_cols=33  Identities=21%  Similarity=0.229  Sum_probs=28.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      +..+...|++.+|..||++.++++.|..+....
T Consensus       278 ~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~  310 (337)
T 3ll6_A          278 FHSLIRAMLQVNPEERLSIAEVVHQLQEIAAAR  310 (337)
T ss_dssp             GHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence            456777999999999999999999998876543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.57  E-value=0.8  Score=42.05  Aligned_cols=47  Identities=15%  Similarity=0.005  Sum_probs=30.8

Q ss_pred             HHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537          155 TAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQA  207 (251)
Q Consensus       155 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  207 (251)
                      .+...|++++|.+....   +  + +...|.++|..+++.++++.|+..|.++
T Consensus       661 ~~l~~~~~~~A~~~~~~---~--~-~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTD---E--S-AEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHTCHHHHHHHHTT---C--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHh---h--C-cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            34455666666555322   2  2 5677788888888888888887777775

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=93.44  E-value=0.014  Score=47.84  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=20.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..|||+.++++
T Consensus       259 ~~~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          259 VKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHccCChhHCcCHHHHhc
Confidence            445667999999999999998864

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=93.43  E-value=0.0059  Score=51.64  Aligned_cols=33  Identities=27%  Similarity=0.383  Sum_probs=27.9

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+...|++.+|..||++.++++.|+.+...
T Consensus       333 ~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~  365 (370)
T 2psq_A          333 ELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL  365 (370)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            355667799999999999999999999887543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.25  E-value=0.28  Score=47.78  Aligned_cols=91  Identities=12%  Similarity=0.019  Sum_probs=71.5

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHcc---CC-------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDG---GT-------------------MVSPTVYARRCLSYLMNDMPQEALGDAM  205 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p-------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~  205 (251)
                      .-+-+|..++..|++++|..+|.+|-..   +.                   ...+..|......+-+.+.++.++...+
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3478999999999999999999987421   10                   0023466777788888999999999999


Q ss_pred             HHHhhCCCCh-----HHHHHHHHHHHhCCCHHHHHHHH
Q 025537          206 QAQVVSPDWP-----TALYLQAACLFSLGMENDARETL  238 (251)
Q Consensus       206 ~al~~~p~~~-----~~~~~~g~~~~~~~~~~~A~~~~  238 (251)
                      .||...+...     ..|.++-..+..+|+|++|...+
T Consensus       924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL  961 (1139)
T 4fhn_B          924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL  961 (1139)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred             HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence            9999765432     26788889999999999998755

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=93.21  E-value=0.014  Score=47.81  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=20.9

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..||++.++++
T Consensus       281 l~~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          281 LRSVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHh
Confidence            556777999999999999999875

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=93.03  E-value=0.015  Score=51.16  Aligned_cols=33  Identities=15%  Similarity=0.162  Sum_probs=28.2

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+...|++.+|.+||++.++++.|..+...
T Consensus       247 ~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~  279 (483)
T 3sv0_A          247 EFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIR  279 (483)
T ss_dssp             HHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHH
Confidence            356777899999999999999999999877543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.96  E-value=1.8  Score=41.53  Aligned_cols=94  Identities=7%  Similarity=-0.010  Sum_probs=75.5

Q ss_pred             HHHHHHHhHHHhhcCHHHHHHHHHHHHc-----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHH
Q 025537          147 LNSKKHGDTAFRAKDFSTAIDCYTQFID-----GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV--VSPDWPTALY  219 (251)
Q Consensus       147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~  219 (251)
                      ..+...-+.+++.|+.++|...|....+     ..|  +...|+.+-..|.+.|++++|++.|++-.+  +.| +.-.|.
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P--dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYn  204 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL--TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYA  204 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC--CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHH
Confidence            4566777889999999999999976432     355  688999999999999999999999998765  456 566677


Q ss_pred             HHHHHHHhCCCH-HHHHHHHHHHHh
Q 025537          220 LQAACLFSLGME-NDARETLKDGTN  243 (251)
Q Consensus       220 ~~g~~~~~~~~~-~~A~~~~~~al~  243 (251)
                      -+-.++.+.|+. ++|...|++..+
T Consensus       205 tLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          205 AALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            777788888885 778888877654

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=92.73  E-value=0.043  Score=45.85  Aligned_cols=32  Identities=19%  Similarity=0.130  Sum_probs=25.8

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+..+|++.+|..||++.++++.|......
T Consensus       286 ~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~  317 (336)
T 4g3f_A          286 TAQAIQEGLRKEPVHRASAMELRRKVGKALQE  317 (336)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCHhHCcCHHHHHHHHHHHHhh
Confidence            44556699999999999999999988765443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.64  E-value=1.7  Score=37.60  Aligned_cols=100  Identities=8%  Similarity=-0.062  Sum_probs=76.3

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHc-c---CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCCh-
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFID-G---GTM-VSPTVYARRCLSYLMNDMPQEALGDAMQAQV---VSPDWP-  215 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~-~---~p~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~-  215 (251)
                      .+......+..++..|+|.+|...+..... .   ++. .-..++..-...|+..++|.+|...++++..   -.+..+ 
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            455667889999999999999999988642 1   211 1245677778889999999999999998732   233333 


Q ss_pred             ---HHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537          216 ---TALYLQAACLFSLGMENDARETLKDGTNL  244 (251)
Q Consensus       216 ---~~~~~~g~~~~~~~~~~~A~~~~~~al~l  244 (251)
                         ..+...|..+...++|.+|..+|..+++.
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               45667789999999999999999999864

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=92.62  E-value=0.01  Score=53.76  Aligned_cols=33  Identities=21%  Similarity=0.257  Sum_probs=28.0

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+...|++.+|.+||++.++++.|..+...
T Consensus       567 ~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~  599 (613)
T 2ozo_A          567 ELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS  599 (613)
T ss_dssp             HHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence            355677899999999999999999999876544

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=92.62  E-value=0.012  Score=49.06  Aligned_cols=26  Identities=19%  Similarity=0.440  Sum_probs=21.9

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      .+..+...|++.+|..||++.++++.
T Consensus       249 ~l~~li~~~L~~dp~~Rpt~~e~l~h  274 (343)
T 3dbq_A          249 DLQDVLKCCLKRDPKQRISIPELLAH  274 (343)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHHHcCCChhHCCCHHHHHhC
Confidence            35567779999999999999999865

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=92.32  E-value=0.014  Score=49.81  Aligned_cols=25  Identities=20%  Similarity=0.421  Sum_probs=21.5

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+..+|++.+|..||++.++++.
T Consensus       297 ~~~li~~~L~~dP~~Rps~~ell~h  321 (390)
T 2zmd_A          297 LQDVLKCCLKRDPKQRISIPELLAH  321 (390)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHHcccChhhCCCHHHHhhC
Confidence            5566779999999999999999765

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=92.29  E-value=0.099  Score=42.14  Aligned_cols=33  Identities=21%  Similarity=0.293  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           41 EGTELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        41 ~~~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      ....+.++..+|++.+|..||++.++++.|..+
T Consensus       268 ~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          268 TLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             HHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence            345577788899999999999999999999865

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=92.19  E-value=0.088  Score=42.44  Aligned_cols=33  Identities=15%  Similarity=0.491  Sum_probs=28.4

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+...|++.+|..||++.++++.|..+...
T Consensus       260 ~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~  292 (295)
T 3ugc_A          260 EIYMIMTECWNNNVNQRPSFRDLALRVDQIRDN  292 (295)
T ss_dssp             HHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence            356677799999999999999999999987654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.01  E-value=0.89  Score=41.73  Aligned_cols=27  Identities=22%  Similarity=0.455  Sum_probs=24.9

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQF  172 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~a  172 (251)
                      ...+++.|..+.+.++++.|+.+|.++
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            467889999999999999999999986

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.00  E-value=0.3  Score=43.08  Aligned_cols=75  Identities=7%  Similarity=-0.118  Sum_probs=61.2

Q ss_pred             ccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          174 DGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP-----DWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       174 ~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +.|+...+.+++-+-..|+..+.|+.|....+++.-...     .....+|..|.++...++|.+|.+++..|++..|..
T Consensus       224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            445543567788888999999999999999999853221     126778889999999999999999999999988864

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.99  E-value=0.85  Score=33.30  Aligned_cols=71  Identities=10%  Similarity=-0.152  Sum_probs=58.9

Q ss_pred             hhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC
Q 025537          158 RAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM  230 (251)
Q Consensus       158 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~  230 (251)
                      ..++.++|.+.|+.++++... .+.+|...|..-.++|+...|.....+|+.+.|.... .+..+..-.+.|.
T Consensus        72 ei~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~-~le~a~~nl~~~~  142 (161)
T 4h7y_A           72 AIQEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE-MLEIALRNLNLQK  142 (161)
T ss_dssp             HHHCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH-HHHHHHHHHHTTC
T ss_pred             HhcCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH-HHHHHHHhhhcCC
Confidence            348999999999999998766 7999999999999999999999999999999997554 4455555555554

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=91.82  E-value=0.04  Score=44.41  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=20.7

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+...|++.+|..||++.++++
T Consensus       255 ~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          255 AVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             HHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             HHHHHHHHccCChhhCcCHHHHhc
Confidence            456677999999999999999875

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=91.80  E-value=0.012  Score=53.61  Aligned_cols=30  Identities=17%  Similarity=0.351  Sum_probs=26.2

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQ   74 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~   74 (251)
                      +..+...|++.+|.+||++.++++.|..+.
T Consensus       601 l~~li~~cl~~dP~~RPs~~~l~~~L~~~~  630 (635)
T 4fl3_A          601 MYDLMNLCWTYDVENRPGFAAVELRLRNYY  630 (635)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            556677999999999999999999998764

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=91.58  E-value=0.069  Score=42.60  Aligned_cols=25  Identities=24%  Similarity=0.414  Sum_probs=21.0

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+..+|++.+|..||++.++++.
T Consensus       256 ~~~li~~~l~~dp~~Rps~~~ll~h  280 (289)
T 1x8b_A          256 FTELLKVMIHPDPERRPSAMALVKH  280 (289)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             HHHHHHHHhCCCcccCCCHHHHhhC
Confidence            5566779999999999999998753

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=91.38  E-value=0.12  Score=42.33  Aligned_cols=33  Identities=15%  Similarity=0.499  Sum_probs=28.4

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+..+|++.+|..||++.++++.|..+...
T Consensus       291 ~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~  323 (326)
T 2w1i_A          291 EIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQ  323 (326)
T ss_dssp             HHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            356677899999999999999999999987653

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=91.29  E-value=0.044  Score=44.13  Aligned_cols=25  Identities=16%  Similarity=0.456  Sum_probs=20.9

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+..+|++.+|..||++.+++..
T Consensus       255 ~~~li~~~l~~dp~~Rps~~~ll~~  279 (295)
T 2clq_A          255 AKAFILKCFEPDPDKRACANDLLVD  279 (295)
T ss_dssp             HHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHHccCChhhCCCHHHHhcC
Confidence            4556779999999999999998753

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=91.08  E-value=0.041  Score=44.37  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=20.9

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+...|++.+|..||++.++++
T Consensus       259 l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          259 VKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHccCChhhCCCHHHHhh
Confidence            566777999999999999999875

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=90.98  E-value=0.15  Score=41.99  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=29.1

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      .+..+...|++.+|..||++.++++.|..+....
T Consensus       282 ~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~  315 (325)
T 3kul_A          282 ALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSP  315 (325)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCc
Confidence            3556778999999999999999999999876554

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=90.93  E-value=0.023  Score=46.42  Aligned_cols=25  Identities=20%  Similarity=0.421  Sum_probs=21.2

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+..+|++.+|..||++.++++.
T Consensus       269 l~~li~~~l~~dp~~Rps~~ell~h  293 (313)
T 3cek_A          269 LQDVLKCCLKRDPKQRISIPELLAH  293 (313)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHHccCCcccCcCHHHHhcC
Confidence            4556679999999999999999864

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=90.68  E-value=0.13  Score=40.72  Aligned_cols=32  Identities=19%  Similarity=0.439  Sum_probs=27.2

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+...|++.+|..||++.++++.|+.+...
T Consensus       234 l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (268)
T 3sxs_A          234 IYQIMYSCWHELPEKRPTFQQLLSSIEPLREK  265 (268)
T ss_dssp             HHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence            55677799999999999999999999887543

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=90.57  E-value=0.077  Score=42.34  Aligned_cols=27  Identities=19%  Similarity=0.367  Sum_probs=22.9

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      +..+..+|++.+|..||++.++++.+.
T Consensus       244 l~~li~~~l~~~p~~Rps~~~ll~~~~  270 (279)
T 2w5a_A          244 LNEIITRMLNLKDYHRPSVEEILENPL  270 (279)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred             HHHHHHHHcCCCcccCCCHHHHHhChh
Confidence            556677999999999999999998753

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=90.36  E-value=0.085  Score=43.03  Aligned_cols=30  Identities=10%  Similarity=0.129  Sum_probs=25.6

Q ss_pred             HHHHHhcccCcCCCCCC-CHHHHHHHHHhhh
Q 025537           45 LVRLASRCLQSEARERP-NAKSLVISLMSLQ   74 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP-~m~~v~~~L~~~~   74 (251)
                      +..+..+|++.+|..|| ++.++++.|....
T Consensus       265 l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l  295 (309)
T 2h34_A          265 FDAVIARGMAKNPEDRYVTCGDLSAAAHAAL  295 (309)
T ss_dssp             HHHHHHHHTCSSGGGSCSSHHHHHHHHHHTC
T ss_pred             HHHHHHHhccCCHHHHHHhHHHHHHHHHHHH
Confidence            45567799999999999 9999999998654

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=90.26  E-value=0.033  Score=45.03  Aligned_cols=24  Identities=33%  Similarity=0.639  Sum_probs=20.8

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..||++.++++
T Consensus       264 ~~~li~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          264 FRKMISLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             HHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHccCChhhCcCHHHHhh
Confidence            556677999999999999999875

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=90.24  E-value=0.18  Score=39.92  Aligned_cols=31  Identities=16%  Similarity=0.459  Sum_probs=27.0

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      +..+...|++.+|..||++.++++.|..+..
T Consensus       236 ~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~  266 (269)
T 4hcu_A          236 VYQIMNHCWRERPEDRPAFSRLLRQLAEIAE  266 (269)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence            5566779999999999999999999987754

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=90.18  E-value=0.19  Score=39.68  Aligned_cols=31  Identities=16%  Similarity=0.459  Sum_probs=27.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      +..+..+|++.+|..||++.++++.|..+..
T Consensus       234 l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~  264 (267)
T 3t9t_A          234 VYQIMNHCWRERPEDRPAFSRLLRQLAEIAE  264 (267)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            5567779999999999999999999987754

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=90.16  E-value=0.19  Score=41.20  Aligned_cols=36  Identities=17%  Similarity=0.128  Sum_probs=30.7

Q ss_pred             HHHHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           42 GTELVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        42 ~~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      ...+..+..+|++.+|..||++.++++.|..+....
T Consensus       285 ~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~  320 (336)
T 3g2f_A          285 VRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIW  320 (336)
T ss_dssp             HHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHH
Confidence            345777888999999999999999999999876554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=90.15  E-value=4  Score=30.50  Aligned_cols=81  Identities=11%  Similarity=0.005  Sum_probs=57.4

Q ss_pred             HHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChHHH---------
Q 025537          156 AFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV--------SPDWPTAL---------  218 (251)
Q Consensus       156 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~---------  218 (251)
                      ....|+++.|.+.....     + +...|..+|...+..|+++-|...|.++=.+        --.+.+.+         
T Consensus        15 AL~lg~l~~A~e~a~~l-----~-~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~   88 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-----N-DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQT   88 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-----C-CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHh-----C-CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            45679999999886654     3 7889999999999999999999988875221        11222222         


Q ss_pred             ----HHHHHHHHhCCCHHHHHHHHHHHH
Q 025537          219 ----YLQAACLFSLGMENDARETLKDGT  242 (251)
Q Consensus       219 ----~~~g~~~~~~~~~~~A~~~~~~al  242 (251)
                          .....+++.+|+++++++.|.+.-
T Consensus        89 ~g~~n~af~~~l~lGdv~~~i~lL~~~~  116 (177)
T 3mkq_B           89 REDFGSMLLNTFYNNSTKERSSIFAEGG  116 (177)
T ss_dssp             TTCHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             CccHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence                222455677888888888776543

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=90.12  E-value=0.18  Score=42.38  Aligned_cols=31  Identities=29%  Similarity=0.539  Sum_probs=27.2

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      +..+..+|++.+|..||++.++++.|..+.+
T Consensus       344 l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~  374 (377)
T 3cbl_A          344 VFRLMEQCWAYEPGQRPSFSTIYQELQSIRK  374 (377)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCchhCcCHHHHHHHHHHHHh
Confidence            5566779999999999999999999988764

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=90.02  E-value=1.6  Score=28.26  Aligned_cols=32  Identities=16%  Similarity=0.086  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      +.|..+..+|...=+.|+|++|+.+|.++|+.
T Consensus        17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           17 EMARKYAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45777778888888999999999999888754

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=89.85  E-value=0.24  Score=39.74  Aligned_cols=33  Identities=12%  Similarity=0.166  Sum_probs=28.3

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      +..+..+|++.+|..||++.++++.|..+....
T Consensus       250 l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~  282 (296)
T 3uzp_A          250 FATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             HHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhc
Confidence            566778999999999999999999998875543

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=89.69  E-value=0.22  Score=40.10  Aligned_cols=30  Identities=20%  Similarity=0.442  Sum_probs=26.4

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+..+..+|++.+|..||++.++++.|+.+
T Consensus       271 ~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  300 (302)
T 4e5w_A          271 EVYQLMRKCWEFQPSNRTSFQNLIEGFEAL  300 (302)
T ss_dssp             HHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            356677799999999999999999999875

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=89.68  E-value=0.2  Score=41.10  Aligned_cols=33  Identities=24%  Similarity=0.318  Sum_probs=26.6

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+...|++.+|.+||++.++++.|+.+...
T Consensus       272 ~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~  304 (327)
T 3lxl_A          272 EVHELMKLCWAPSPQDRPSFSALGPQLDMLWSG  304 (327)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHC---
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence            356677799999999999999999999877544

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=89.66  E-value=0.18  Score=40.34  Aligned_cols=34  Identities=18%  Similarity=0.367  Sum_probs=28.5

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      .+..+...|++.+|..||++.++++.|..+....
T Consensus       240 ~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~~  273 (288)
T 3kfa_A          240 KVYELMRACWQWNPSDRPSFAEIHQAFETMFQES  273 (288)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHhc
Confidence            3556777999999999999999999998776553

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=89.59  E-value=0.25  Score=39.50  Aligned_cols=34  Identities=15%  Similarity=0.196  Sum_probs=28.8

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      .+..+...|++.+|.+||++.++++.|..+....
T Consensus       249 ~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~  282 (296)
T 4hgt_A          249 EFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             HHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Confidence            3566777999999999999999999998876553

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=89.56  E-value=0.23  Score=39.56  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=27.5

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+...|++.+|..||++.++++.|+.+...
T Consensus       243 l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~  274 (278)
T 1byg_A          243 VYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH  274 (278)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence            55566799999999999999999999987543

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=89.35  E-value=0.052  Score=43.60  Aligned_cols=24  Identities=33%  Similarity=0.704  Sum_probs=21.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..||++.++++
T Consensus       243 ~~~li~~~l~~~p~~Rpt~~e~l~  266 (290)
T 3fme_A          243 FVDFTSQCLKKNSKERPTYPELMQ  266 (290)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HHHHHHHHhhcChhhCcCHHHHHh
Confidence            556777999999999999999976

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=89.29  E-value=0.079  Score=43.58  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=20.9

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+..+|++.+|..||++.++++.
T Consensus       271 l~~li~~~l~~dp~~Rps~~ell~h  295 (321)
T 2c30_A          271 LRDFLERMLVRDPQERATAQELLDH  295 (321)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHHccCChhhCcCHHHHhcC
Confidence            4456669999999999999998764

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=89.27  E-value=0.29  Score=39.28  Aligned_cols=32  Identities=16%  Similarity=0.336  Sum_probs=27.5

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+...|++.+|..||++.++++.|..+...
T Consensus       249 l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~  280 (291)
T 1xbb_A          249 MYDLMNLCWTYDVENRPGFAAVELRLRNYYYD  280 (291)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            55677799999999999999999999876544

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=89.27  E-value=0.31  Score=40.15  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=28.6

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      .+..+..+|++.+|..||++.++++.|..+....
T Consensus       278 ~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~  311 (333)
T 1mqb_A          278 AIYQLMMQCWQQERARRPKFADIVSILDKLIRAP  311 (333)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence            3556778999999999999999999998876543

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=89.23  E-value=0.25  Score=39.43  Aligned_cols=32  Identities=31%  Similarity=0.514  Sum_probs=27.5

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+...|+..+|..||++.++++.|..+...
T Consensus       243 l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~  274 (281)
T 3cc6_A          243 LYTLMTRCWDYDPSDRPRFTELVCSLSDVYQM  274 (281)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCchhCcCHHHHHHHHHHHHHh
Confidence            55677799999999999999999999877543

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=89.03  E-value=0.066  Score=43.49  Aligned_cols=25  Identities=28%  Similarity=0.531  Sum_probs=21.0

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+..+|++.+|..||++.++++.
T Consensus       246 ~~~li~~~l~~dp~~Rps~~ell~h  270 (297)
T 3fxz_A          246 FRDFLNRCLEMDVEKRGSAKELLQH  270 (297)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             HHHHHHHHccCChhHCcCHHHHhhC
Confidence            4556779999999999999998753

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=88.86  E-value=0.26  Score=39.52  Aligned_cols=33  Identities=9%  Similarity=0.035  Sum_probs=28.2

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+...|++.+|..||++.++++.|..+...
T Consensus       252 ~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~  284 (298)
T 1csn_A          252 EFYKYMHYARNLAFDATPDYDYLQGLFSKVLER  284 (298)
T ss_dssp             HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHh
Confidence            355677799999999999999999999887654

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=88.85  E-value=0.26  Score=39.65  Aligned_cols=32  Identities=22%  Similarity=0.404  Sum_probs=27.8

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+...|++.+|..||++.++++.|..+...
T Consensus       261 l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~  292 (298)
T 3f66_A          261 LYEVMLKCWHPKAEMRPSFSELVSRISAIFST  292 (298)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            55677799999999999999999999887654

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=88.84  E-value=0.3  Score=38.87  Aligned_cols=31  Identities=23%  Similarity=0.472  Sum_probs=27.0

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      +..+..+|++.+|..||++.++++.|..+..
T Consensus       250 l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~  280 (283)
T 3gen_A          250 VYTIMYSCWHEKADERPTFKILLSNILDVMD  280 (283)
T ss_dssp             HHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence            5567779999999999999999999987654

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=88.80  E-value=2.3  Score=27.48  Aligned_cols=32  Identities=16%  Similarity=0.067  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      +.|..+..+|...=+.|+|++|+.+|.++|+.
T Consensus         9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   40 (83)
T 2v6y_A            9 DMARKYAILAVKADKEGKVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34667778888888889999998888888754

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=88.77  E-value=0.28  Score=39.13  Aligned_cols=31  Identities=23%  Similarity=0.441  Sum_probs=27.0

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      +..+...|++.+|..||++.++++.|..+..
T Consensus       246 l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~  276 (281)
T 1mp8_A          246 LYSLMTKCWAYDPSRRPRFTELKAQLSTILE  276 (281)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence            5567779999999999999999999987654

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=88.76  E-value=0.25  Score=41.80  Aligned_cols=37  Identities=5%  Similarity=0.016  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           40 DEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        40 ~~~~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      ..-..+..+...|+..+|..||++.++++.+..+...
T Consensus       274 ~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~  310 (396)
T 4eut_A          274 GLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR  310 (396)
T ss_dssp             HHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred             HHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence            3334456688899999999999999999999876543

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=88.74  E-value=2.3  Score=26.78  Aligned_cols=29  Identities=17%  Similarity=0.231  Sum_probs=26.5

Q ss_pred             HHHHhHHHhhcCHHHHHHHHHHHHccCCC
Q 025537          150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTM  178 (251)
Q Consensus       150 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~  178 (251)
                      ...|..++..|++++|+.+|.+||...|.
T Consensus        21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q   49 (73)
T 3ax2_A           21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ   49 (73)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999886

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=88.70  E-value=0.29  Score=38.90  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=28.0

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+...|++.+|..||++.++++.|+.+...
T Consensus       238 ~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  270 (279)
T 1qpc_A          238 ELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA  270 (279)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccChhhCCCHHHHHHHHHHHHHh
Confidence            355677799999999999999999999877544

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=88.53  E-value=0.29  Score=40.08  Aligned_cols=31  Identities=16%  Similarity=0.314  Sum_probs=26.8

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      +..+...|++.+|..||++.++++.|..+..
T Consensus       296 l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~  326 (333)
T 2i1m_A          296 IYSIMQACWALEPTHRPTFQQICSFLQEQAQ  326 (333)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccChhhCcCHHHHHHHHHHHHH
Confidence            5567779999999999999999999987654

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=88.50  E-value=0.3  Score=41.11  Aligned_cols=34  Identities=26%  Similarity=0.374  Sum_probs=28.7

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      .+..+...|++.+|..||++.++++.|..+....
T Consensus       321 ~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~  354 (382)
T 3tt0_A          321 ELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALT  354 (382)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence            3556777999999999999999999999876543

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=88.35  E-value=0.056  Score=43.20  Aligned_cols=24  Identities=17%  Similarity=0.177  Sum_probs=20.7

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..||++.++++
T Consensus       239 ~~~li~~~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          239 AKDLIHQLLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             HHHHHHHHcccCHhhCCCHHHHhc
Confidence            456777999999999999998875

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=88.29  E-value=0.29  Score=39.57  Aligned_cols=32  Identities=25%  Similarity=0.421  Sum_probs=27.3

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      .+..+..+|++.+|..||++.++++.|+.+..
T Consensus       280 ~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~  311 (314)
T 2ivs_A          280 EMYRLMLQCWKQEPDKRPVFADISKDLEKMMV  311 (314)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            35667789999999999999999999987643

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=88.26  E-value=0.27  Score=39.92  Aligned_cols=32  Identities=25%  Similarity=0.376  Sum_probs=27.4

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      .+..+...|++.+|..||++.++++.|..+..
T Consensus       275 ~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~  306 (317)
T 2buj_A          275 ALWQLLNSMMTVDPHQRPHIPLLLSQLEALQP  306 (317)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhhcChhhCCCHHHHHHHhhhcCC
Confidence            35567779999999999999999999987653

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=88.21  E-value=0.32  Score=39.39  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=27.4

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+...|++.+|..||++.++++.|..+...
T Consensus       280 l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  311 (316)
T 2xir_A          280 MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  311 (316)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence            55667799999999999999999999877543

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=88.11  E-value=0.3  Score=39.04  Aligned_cols=32  Identities=19%  Similarity=0.361  Sum_probs=26.8

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      .+..+...|+..+|..||++.++++.|..+..
T Consensus       253 ~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~  284 (291)
T 1u46_A          253 DIYNVMVQCWAHKPEDRPTFVALRDFLLEAQP  284 (291)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHccCCcccCcCHHHHHHHHHHhCc
Confidence            35567779999999999999999999987653

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=87.99  E-value=0.34  Score=38.86  Aligned_cols=34  Identities=18%  Similarity=0.364  Sum_probs=28.7

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      .+..+...|++.+|..||++.++++.|..+....
T Consensus       256 ~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l  289 (298)
T 3pls_A          256 SLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSAL  289 (298)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHH
Confidence            3556777999999999999999999998876553

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=87.99  E-value=0.33  Score=39.19  Aligned_cols=32  Identities=19%  Similarity=0.370  Sum_probs=27.3

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+..+|++.+|..||++.++++.|..+...
T Consensus       277 l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  308 (313)
T 1t46_A          277 MYDIMKTCWDADPLKRPTFKQIVQLIEKQISE  308 (313)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence            55677799999999999999999999876543

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=87.98  E-value=0.37  Score=39.05  Aligned_cols=33  Identities=24%  Similarity=0.453  Sum_probs=28.2

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+...|+..+|..||++.+++..|..+...
T Consensus       277 ~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~  309 (313)
T 3brb_A          277 ELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLES  309 (313)
T ss_dssp             HHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            356677799999999999999999999887554

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=87.89  E-value=0.15  Score=42.74  Aligned_cols=24  Identities=29%  Similarity=0.531  Sum_probs=20.2

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..||+..++++
T Consensus       253 ~~~li~~~L~~dP~~R~s~~e~l~  276 (350)
T 4b9d_A          253 LRSLVSQLFKRNPRDRPSVNSILE  276 (350)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHccCChhHCcCHHHHhc
Confidence            445666999999999999999875

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=87.84  E-value=0.094  Score=41.93  Aligned_cols=25  Identities=16%  Similarity=0.146  Sum_probs=21.3

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+...|++.+|..||++.++++.
T Consensus       238 ~~~li~~~l~~dp~~Rps~~~~l~h  262 (284)
T 3kk8_A          238 AKSLIDSMLTVNPKKRITADQALKV  262 (284)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             HHHHHHHHcccChhhCCCHHHHhcC
Confidence            4566779999999999999999764

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=87.83  E-value=0.3  Score=39.82  Aligned_cols=32  Identities=22%  Similarity=0.381  Sum_probs=27.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+...|++.+|..||++.++++.|+.+...
T Consensus       268 l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~  299 (309)
T 3p86_A          268 VAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS  299 (309)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            55677799999999999999999999877544

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=87.62  E-value=4.8  Score=29.57  Aligned_cols=62  Identities=8%  Similarity=0.006  Sum_probs=47.6

Q ss_pred             HHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHH------HHHHHhcCCHHHHHHHHHHHHhh
Q 025537          149 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARR------CLSYLMNDMPQEALGDAMQAQVV  210 (251)
Q Consensus       149 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~------a~~~~~~~~~~~A~~~~~~al~~  210 (251)
                      .+..|..+|..|+|-+|-+.++.+....+..  ...+|..+      |..+.+.|++..|...+.+|+..
T Consensus        35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~  104 (161)
T 2ijq_A           35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY  104 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4577899999999999999999999887652  23333322      33455689999999999999873

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=87.56  E-value=0.2  Score=40.47  Aligned_cols=24  Identities=17%  Similarity=0.162  Sum_probs=20.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..|||..++++
T Consensus       239 ~~~li~~~L~~dP~~R~s~~eil~  262 (275)
T 3hyh_A          239 AAGLIKRMLIVNPLNRISIHEIMQ  262 (275)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHccCChhHCcCHHHHHc
Confidence            345666999999999999999875

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=87.55  E-value=0.36  Score=38.58  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=28.9

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      .+..+...|++.+|..||++.++++.|..+....
T Consensus       241 ~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~  274 (287)
T 1u59_A          241 ELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL  274 (287)
T ss_dssp             HHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence            3556777999999999999999999999876554

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=87.44  E-value=0.089  Score=42.53  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=20.4

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..||++.++++
T Consensus       269 l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          269 LKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             HHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             HHHHHHHHhhcChhhCCCHHHHhc
Confidence            556677999999999999998864

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=87.43  E-value=0.28  Score=41.13  Aligned_cols=33  Identities=18%  Similarity=0.446  Sum_probs=28.7

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      +..+...|++.+|..||++.++++.|..+....
T Consensus       315 l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~  347 (367)
T 3l9p_A          315 VYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  347 (367)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence            556778999999999999999999998876554

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=87.43  E-value=0.4  Score=39.06  Aligned_cols=34  Identities=21%  Similarity=0.436  Sum_probs=28.8

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      .+..+..+|++.+|..||++.++++.|+.+....
T Consensus       267 ~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~  300 (323)
T 3qup_A          267 EVYDLMYQCWSADPKQRPSFTCLRMELENILGHL  300 (323)
T ss_dssp             HHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence            3567778999999999999999999999876554

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=87.36  E-value=0.24  Score=39.59  Aligned_cols=32  Identities=28%  Similarity=0.519  Sum_probs=26.5

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+...|++.+|..||++.++++.|..+..+
T Consensus       245 l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p  276 (289)
T 4fvq_A          245 LANLINNCMDYEPDHRPSFRAIIRDLNSLFTP  276 (289)
T ss_dssp             THHHHHHHSCSSGGGSCCHHHHHHHHHTCC--
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHHhcCC
Confidence            45567799999999999999999999877544

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=87.31  E-value=0.33  Score=42.02  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=27.8

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+..+|++.+|..||++.+++..|+.+...
T Consensus       413 ~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~  445 (454)
T 1qcf_A          413 ELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA  445 (454)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred             HHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence            355677899999999999999999999876443

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=87.31  E-value=0.38  Score=39.52  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=28.2

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      +..+...|++.+|..||++.++++.|..+....
T Consensus       288 l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~  320 (334)
T 2pvf_A          288 LYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT  320 (334)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence            556777999999999999999999999876543

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=87.22  E-value=0.036  Score=46.59  Aligned_cols=24  Identities=21%  Similarity=0.169  Sum_probs=20.5

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..||++.++++
T Consensus       329 ~~~li~~~L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          329 VKTLIGRFLNFDRRRRLLPLEAME  352 (371)
T ss_dssp             HHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred             HHHHHHHHcCCChhhCCCHHHHhc
Confidence            455667999999999999999874

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=87.21  E-value=0.36  Score=39.61  Aligned_cols=33  Identities=24%  Similarity=0.305  Sum_probs=27.6

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+...|++.+|..||++.++++.|..+...
T Consensus       304 ~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~  336 (343)
T 1luf_A          304 ELYNLMRLCWSKLPADRPSFCSIHRILQRMCER  336 (343)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHcccCcccCCCHHHHHHHHHHHHhh
Confidence            355677799999999999999999999887544

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=87.20  E-value=1.1  Score=29.34  Aligned_cols=31  Identities=19%  Similarity=0.216  Sum_probs=24.4

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      .+..+..+|..+-..|+|++|+.+|..+|+.
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~   45 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGIDL   45 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3556677777788889999999999888754

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=87.13  E-value=0.21  Score=40.88  Aligned_cols=25  Identities=16%  Similarity=0.182  Sum_probs=21.2

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+...|++.+|..||++.+++..
T Consensus       249 ~~~li~~~l~~dp~~Rps~~e~l~h  273 (321)
T 2a2a_A          249 AKDFIRKLLVKETRKRLTIQEALRH  273 (321)
T ss_dssp             HHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred             HHHHHHHHcCCChhhCcCHHHHhcC
Confidence            5567779999999999999988763

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=86.86  E-value=0.085  Score=44.03  Aligned_cols=25  Identities=24%  Similarity=0.539  Sum_probs=20.8

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+..+|++.+|..||++.++++.
T Consensus       282 l~~li~~~l~~dP~~Rps~~~ll~h  306 (348)
T 1u5q_A          282 FRNFVDSCLQKIPQDRPTSEVLLKH  306 (348)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred             HHHHHHHHcccChhhCcCHHHHhhC
Confidence            4456669999999999999998764

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=86.08  E-value=0.35  Score=41.55  Aligned_cols=26  Identities=23%  Similarity=0.377  Sum_probs=22.5

Q ss_pred             HHHHHHHhcccCcCCCCCCCHHHHHH
Q 025537           43 TELVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        43 ~~~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      ..+..+..+|++.+|..||++.++++
T Consensus       270 ~~~~~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          270 AEATDLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHHHhhCChhhCCCHHHHHh
Confidence            45667888999999999999999975

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=86.01  E-value=0.49  Score=39.81  Aligned_cols=32  Identities=22%  Similarity=0.404  Sum_probs=27.7

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+..+|++.+|..||++.++++.|..+...
T Consensus       325 l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~  356 (373)
T 3c1x_A          325 LYEVMLKCWHPKAEMRPSFSELVSRISAIFST  356 (373)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            55667799999999999999999999887554

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=85.86  E-value=0.49  Score=38.63  Aligned_cols=33  Identities=18%  Similarity=0.446  Sum_probs=28.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      +..+...|++.+|..||++.++++.|..+....
T Consensus       274 l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~  306 (327)
T 2yfx_A          274 VYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  306 (327)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCH
Confidence            556777999999999999999999998776543

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=85.66  E-value=0.51  Score=40.77  Aligned_cols=32  Identities=19%  Similarity=0.323  Sum_probs=27.4

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+...|++.+|..||++.+++..|+.+...
T Consensus       415 l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          415 VYDVMKNCWHLDAATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence            45566799999999999999999999887643

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=85.59  E-value=0.13  Score=42.00  Aligned_cols=25  Identities=20%  Similarity=0.461  Sum_probs=20.8

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+..+|+..+|..||++.++++.
T Consensus       263 l~~li~~~l~~dp~~Rps~~~ll~h  287 (326)
T 2x7f_A          263 FQSFIESCLVKNHSQRPATEQLMKH  287 (326)
T ss_dssp             HHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHHHhccChhhCCCHHHHhhC
Confidence            4456679999999999999998763

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=85.43  E-value=0.16  Score=41.72  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=20.8

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+...|++.+|..||++.++++.
T Consensus       264 ~~~li~~~L~~dP~~Rpt~~~ll~h  288 (327)
T 3lm5_A          264 ATDFIQSLLVKNPEKRPTAEICLSH  288 (327)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred             HHHHHHHHcCCChhhCcCHHHHhCC
Confidence            4566779999999999999988653

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=85.41  E-value=0.51  Score=38.75  Aligned_cols=32  Identities=19%  Similarity=0.306  Sum_probs=26.4

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+...|++.+|..||++.++++.|..+...
T Consensus       304 l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  335 (344)
T 1rjb_A          304 IYIIMQSCWAFDSRKRPSFPNLTSFLGCQLAD  335 (344)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             HHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence            55677799999999999999999999876543

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=85.20  E-value=1.4  Score=29.22  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=23.0

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      .|..+..+|...-+.|+|++|+.+|..+++.
T Consensus        14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~   44 (93)
T 1wfd_A           14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3556667777777888888888888877754

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=85.16  E-value=1.5  Score=38.03  Aligned_cols=90  Identities=10%  Similarity=-0.039  Sum_probs=64.3

Q ss_pred             hcCHHHHHHHHHHHHccC-----CC--CC---H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----------C
Q 025537          159 AKDFSTAIDCYTQFIDGG-----TM--VS---P-----TVYARRCLSYLMNDMPQEALGDAMQAQVVSP----------D  213 (251)
Q Consensus       159 ~~~~~~A~~~~~~al~~~-----p~--~~---~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----------~  213 (251)
                      ....++|.....++....     |+  .+   .     -+.+++..+|+++++..-+-..++..-...+          +
T Consensus       139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q  218 (455)
T 3t5v_B          139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQ  218 (455)
T ss_dssp             THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence            445677888888877541     11  11   1     1345677899999999888777754322222          2


Q ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-hhhc
Q 025537          214 WPTALYLQAACLFSLGMENDARETLKDGTNL-EAKK  248 (251)
Q Consensus       214 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l-~P~~  248 (251)
                      .+..+|.+|..+...++|.+|.+++..|++. .|..
T Consensus       219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~  254 (455)
T 3t5v_B          219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP  254 (455)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence            3577899999999999999999999999998 8754

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=85.09  E-value=1.4  Score=28.52  Aligned_cols=31  Identities=13%  Similarity=0.095  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      .|..+..+|...-..|+|++|+.+|..++++
T Consensus        12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~   42 (85)
T 2v6x_A           12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDY   42 (85)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4556667777777888999999888888764

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=84.95  E-value=7.3  Score=28.06  Aligned_cols=79  Identities=14%  Similarity=0.110  Sum_probs=43.0

Q ss_pred             hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHH
Q 025537          159 AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYL-MNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARET  237 (251)
Q Consensus       159 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~  237 (251)
                      -|+...-+.+|-+.= .    +.+ |.++|.-++ ..|+-++--..+...+.-++-++..++.+|.+|.++|+..+|.+.
T Consensus        74 C~NlKrVi~C~~~~n-~----~se-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eL  147 (172)
T 1wy6_A           74 CQNLKSVVECGVINN-T----LNE-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTL  147 (172)
T ss_dssp             CSCTHHHHHHHHHTT-C----CCH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhcHHHHHHHHHHhc-c----hHH-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence            345555566655421 1    111 334444333 444444444444443455555677777777777777777777777


Q ss_pred             HHHHHh
Q 025537          238 LKDGTN  243 (251)
Q Consensus       238 ~~~al~  243 (251)
                      ..+|.+
T Consensus       148 l~~AC~  153 (172)
T 1wy6_A          148 LIEACK  153 (172)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777654

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=84.94  E-value=1.3  Score=29.21  Aligned_cols=28  Identities=18%  Similarity=0.356  Sum_probs=23.5

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFI  173 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al  173 (251)
                      |..+-.++..+.+.|+|++||.+..+|.
T Consensus        15 AH~~~RrAe~ll~~gkydeAIech~kAa   42 (97)
T 2crb_A           15 AHQQSRRADRLLAAGKYEEAISCHRKAT   42 (97)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            6666788899999999999998887765

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=84.86  E-value=0.59  Score=38.15  Aligned_cols=32  Identities=25%  Similarity=0.511  Sum_probs=27.6

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+..+|+..+|..||++.++++.|..+...
T Consensus       270 l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  301 (327)
T 1fvr_A          270 VYDLMRQCWREKPYERPSFAQILVSLNRMLEE  301 (327)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            55677799999999999999999999877554

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=84.72  E-value=0.58  Score=40.41  Aligned_cols=32  Identities=28%  Similarity=0.374  Sum_probs=27.2

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+..+|++.+|..||++.+++..|+.+...
T Consensus       410 l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~  441 (452)
T 1fmk_A          410 LHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS  441 (452)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHhcc
Confidence            55677799999999999999999999876543

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=84.47  E-value=0.5  Score=39.03  Aligned_cols=30  Identities=20%  Similarity=0.186  Sum_probs=25.6

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+..+...|++.+|..||++.++++.|..+
T Consensus       297 ~l~~li~~~l~~dp~~Rps~~~l~~~L~~~  326 (345)
T 2v62_A          297 EIAQFLVCAHSLAYDEKPNYQALKKILNPH  326 (345)
T ss_dssp             HHHHHHHHHHTCCTTCCCCHHHHHHHHCTT
T ss_pred             HHHHHHHHHhhcCcccCCCHHHHHHHHhcc
Confidence            355666799999999999999999999754

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=84.46  E-value=0.27  Score=41.72  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=21.2

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+..+|++.+|..||++.++++.
T Consensus       281 ~~~li~~~L~~dP~~Rpt~~ell~h  305 (387)
T 1kob_A          281 AKDFIKNLLQKEPRKRLTVHDALEH  305 (387)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHHHcCCChhHCcCHHHHhhC
Confidence            4567779999999999999998753

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=84.37  E-value=1.5  Score=30.50  Aligned_cols=31  Identities=10%  Similarity=0.253  Sum_probs=22.9

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      .|..+..+|...=..|+|++|+.+|..|+++
T Consensus        17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~   47 (117)
T 2cpt_A           17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQY   47 (117)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3555666677777788888888888887754

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=84.30  E-value=0.18  Score=42.24  Aligned_cols=24  Identities=25%  Similarity=0.329  Sum_probs=19.5

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|+..+|..||+..++++
T Consensus       300 ~~dli~~~L~~dP~~R~ta~e~l~  323 (346)
T 4fih_A          300 LKGFLDRLLVRDPAQRATAAELLK  323 (346)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             HHHHHHHHcCCChhHCcCHHHHhc
Confidence            345566999999999999988764

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=83.89  E-value=0.6  Score=37.89  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=25.8

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQ   74 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~   74 (251)
                      +..+..+|++.+|..||++.++++.|..+.
T Consensus       269 l~~li~~~l~~dp~~Rps~~e~l~~L~~~~  298 (322)
T 1p4o_A          269 LFELMRMCWQYNPKMRPSFLEIISSIKEEM  298 (322)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHGGGS
T ss_pred             HHHHHHHHcCCCcccCcCHHHHHHHHHHhh
Confidence            556677999999999999999999997653

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=83.83  E-value=6.1  Score=35.70  Aligned_cols=89  Identities=15%  Similarity=0.016  Sum_probs=61.1

Q ss_pred             HhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHH
Q 025537          153 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMEN  232 (251)
Q Consensus       153 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~  232 (251)
                      |..++..+...++...+.+......+  .....-++-..++.|++..|...+.+.-.-........|-+|.++..+|+.+
T Consensus       259 a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~  336 (618)
T 1qsa_A          259 AWRLMGNDVTDEQAKWRDDAIMRSQS--TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREA  336 (618)
T ss_dssp             HHTSCSTTCCHHHHHHHHHHHHTCCC--HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCChHHHHHHHhccccCCC--hHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHH
Confidence            33344445355677777776654433  2223233333456799999999887755543456888999999999999999


Q ss_pred             HHHHHHHHHHh
Q 025537          233 DARETLKDGTN  243 (251)
Q Consensus       233 ~A~~~~~~al~  243 (251)
                      +|...|+++.+
T Consensus       337 ~a~~~~~~~a~  347 (618)
T 1qsa_A          337 EAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999998874

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=83.50  E-value=2.1  Score=28.16  Aligned_cols=27  Identities=22%  Similarity=0.138  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025537          182 TVYARRCLSYLMNDMPQEALGDAMQAQ  208 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~~~~al  208 (251)
                      -.+..++..+++.|+|++||+...+|.
T Consensus        16 H~~~RrAe~ll~~gkydeAIech~kAa   42 (97)
T 2crb_A           16 HQQSRRADRLLAAGKYEEAISCHRKAT   42 (97)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            345556666666666666666665543

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=81.43  E-value=0.2  Score=40.80  Aligned_cols=28  Identities=14%  Similarity=0.190  Sum_probs=20.9

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH-HHHh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI-SLMS   72 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~-~L~~   72 (251)
                      +..+..+|++.+|..||+..+++. .|..
T Consensus       250 l~~li~~~l~~dP~~R~~~~~~l~~~l~~  278 (311)
T 3ork_A          250 LDAVVLKALAKNPENRYQTAAEMRADLVR  278 (311)
T ss_dssp             HHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHhhChhhHHHHHHHHHH
Confidence            456677999999999997776654 4443

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=81.17  E-value=0.41  Score=41.40  Aligned_cols=25  Identities=16%  Similarity=0.138  Sum_probs=21.0

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVIS   69 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~   69 (251)
                      +..+...|++.+|..||++.++++.
T Consensus       244 ~~~li~~~L~~dP~~Rpta~e~L~h  268 (444)
T 3soa_A          244 AKDLINKMLTINPSKRITAAEALKH  268 (444)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHHHHHcCCChhHCCCHHHHhcC
Confidence            4456679999999999999998764

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.15  E-value=2.9  Score=35.84  Aligned_cols=66  Identities=9%  Similarity=-0.081  Sum_probs=56.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537          180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP---DWPTALYLQAACLFSLGMENDARETLKDGTNLE  245 (251)
Q Consensus       180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~  245 (251)
                      -..++..+|..|+..|++++|+..+.++.....   .-...++....++...+++..+...+.++..+-
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~  198 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI  198 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence            455788899999999999999999999887533   336888888899999999999999999987654

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=81.05  E-value=0.34  Score=41.75  Aligned_cols=24  Identities=25%  Similarity=0.329  Sum_probs=19.5

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|+..+|..||+..++++
T Consensus       377 ~~dli~~~L~~dP~~R~ta~ell~  400 (423)
T 4fie_A          377 LKGFLDRLLVRDPAQRATAAELLK  400 (423)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             HHHHHHHHcCCChhHCcCHHHHhc
Confidence            345566999999999999988764

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=80.62  E-value=0.92  Score=40.15  Aligned_cols=32  Identities=28%  Similarity=0.374  Sum_probs=27.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +..+..+|++.+|..||++.+++..|+.+...
T Consensus       493 l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~  524 (535)
T 2h8h_A          493 LHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS  524 (535)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHHHhhc
Confidence            45667799999999999999999999876433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	9e-06
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-05
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-04
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	5e-04
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	7e-04
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	0.002
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	0.002
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	0.003
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	0.003
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	0.003
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.004
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	0.004

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 9e-06
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 1/96 (1%)

Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV 209
           K+ G+  F  + +  A  CY + I    +     Y  R L YL    P++AL D  +A  
Sbjct: 8   KEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE 66

Query: 210 VSPDWPTALYLQAACLFSLGMENDARETLKDGTNLE 245
           +      A +    C   +   ++A   L+   +L 
Sbjct: 67  LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           +L ++ +     P   +DL        L++             ++  L   C Q    +R
Sbjct: 205 LLWEIATYGM-SPYPGIDL---SQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDR 260

Query: 61  PNAKSLVISLMSLQKEAEVPSYV 83
           P+   +  +  ++ +E+ +   V
Sbjct: 261 PSFAEIHQAFETMFQESSISDEV 283

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 1   MLLDLLSGK----HIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSE 56
           +L +L++G+    +I     +  +  + +L    S +  +        + RL + CL+ +
Sbjct: 198 VLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPK----AMKRLMAECLKKK 253

Query: 57  ARERPNAKSLVISLMSLQKE 76
             ERP    ++ S+  L + 
Sbjct: 254 RDERPLFPQILASIELLARS 273

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 8/70 (11%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 11  IPPSHALDLIRSKNFLLLMDSALEGHFSNDEGT-ELVRLASRCLQSEARERPNAKSLVIS 69
           +P   +++ +R       +   +   + + E    + ++   C  +    R  A  +  +
Sbjct: 232 VPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKT 291

Query: 70  LMSLQKEAEV 79
           L  L ++  +
Sbjct: 292 LSQLSQQEGI 301

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           ++ ++++    P       + +   +  ++         D  + + +L  +C Q E   R
Sbjct: 202 VMWEVMTYGERPYWE----LSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARR 257

Query: 61  PNAKSLVISLMSLQKEAE 78
           P    +V  L  L +  +
Sbjct: 258 PKFADIVSILDKLIRAPD 275

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           +L +L++    PP   ++      +LL     L+  +  D    L  +  +C   +A  R
Sbjct: 223 LLWELMTRGA-PPYPDVNTFDITVYLLQGRRLLQPEYCPDP---LYEVMLKCWHPKAEMR 278

Query: 61  PNAKSLVISLMSLQKEAEVPSYVLL 85
           P+   LV  + ++        YV +
Sbjct: 279 PSFSELVSRISAIFSTFIGEHYVHV 303

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 20/135 (14%)

Query: 135 SFQMWTSQMQETLNSKKH-GDTAFRAKDFSTAIDCYTQFI--------------DGGTMV 179
           S++M T +  E     K  G   F+   +  A+  Y + +                    
Sbjct: 3   SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF 62

Query: 180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK 239
               +    + YL      +A+    +A  +       LY +      +     A+   +
Sbjct: 63  LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 122

Query: 240 -----DGTNLEAKKN 249
                +  N  A+  
Sbjct: 123 KVLEVNPQNKAARLQ 137

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 9/75 (12%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           ++ ++ S   IP  +      +   +  + +    +      T + ++ + C +    +R
Sbjct: 191 LMWEVFSEGKIPYEN----RSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDR 246

Query: 61  PNAKSLVISLMSLQK 75
           P    L+  L  + +
Sbjct: 247 PAFSRLLRQLAEIAE 261

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 20/135 (14%)

Query: 135 SFQMWTSQMQETLNSKKH-GDTAFRAKDFSTAIDCYTQFIDGGTMVS------------- 180
           S++M + +  E     K  G   F+   +  A+  Y + +      S             
Sbjct: 1   SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 60

Query: 181 -PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK 239
               +    + +L       A+    +A  +  +    L  +     ++     AR   +
Sbjct: 61  RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 120

Query: 240 -----DGTNLEAKKN 249
                   N  AK  
Sbjct: 121 KVLQLYPNNKAAKTQ 135

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.003
 Identities = 10/78 (12%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
            + +L++    P     D I +     +++             ++  +  +C   +A  R
Sbjct: 202 TVWELMTFGSKPY----DGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSR 257

Query: 61  PNAKSLVISLMSLQKEAE 78
           P  + L+I    + ++ +
Sbjct: 258 PKFRELIIEFSKMARDPQ 275

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGD 203
           ++ L  K+ G+ A++ KDF TA+  Y +  +     + T    +   Y       +    
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCREL 60

Query: 204 AMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
             +A  V  +        A     +G      E  KD
Sbjct: 61  CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKD 97

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 11/75 (14%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 1   MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
           ++ +++S    P       + +++ +  ++         D  + L +L   C Q +   R
Sbjct: 222 VMWEVMSYGERPYWD----MTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHR 277

Query: 61  PNAKSLVISLMSLQK 75
           P    +V +L  + +
Sbjct: 278 PKFGQIVNTLDKMIR 292

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.89
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.88
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.85
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.84
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.82
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.79
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.76
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.75
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.7
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.7
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.7
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.68
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.67
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.66
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.66
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.62
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.6
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.57
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.56
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.56
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.49
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.48
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.45
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.42
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.42
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.41
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.37
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.3
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.3
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.3
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.3
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.26
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.16
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.11
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.09
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.06
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.04
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.01
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.85
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.77
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.6
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.59
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.52
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.5
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.49
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.47
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.4
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.24
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.14
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.83
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	97.2
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	96.96
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	96.9
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	96.85
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	96.81
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	96.73
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	96.64
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	96.43
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	96.4
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	96.22
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	96.21
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	96.19
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	95.98
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	95.9
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	95.74
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	95.26
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	95.03
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	94.03
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	94.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	93.51
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	93.29
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	93.11
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	92.85
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	92.29
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	92.13
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	92.01
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	91.2
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	90.93
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	90.86
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	90.54
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	89.95
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	89.73
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	89.05
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	88.41
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	88.21
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	87.93
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	87.53
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	87.29
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	84.96
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	84.66
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	83.79
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	83.31

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.5e-23  Score=146.19  Aligned_cols=103  Identities=24%  Similarity=0.381  Sum_probs=100.2

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      +..++++|+.+++.|+|++|+.+|+++|+.+|. ++.+|.++|.+|..+|++++|+.+|.++++++|+++.+|+++|.++
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            567899999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          226 FSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ..+|++++|+.+|+++++++|++.
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~  105 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNP  105 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=9.1e-23  Score=157.85  Aligned_cols=103  Identities=21%  Similarity=0.408  Sum_probs=100.5

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      ++.++++|+.+|+.|+|++|+..|++||+++|. ++.+|+++|.||.++|+|++|+.+|++|+.++|+++.+|+++|.+|
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            678999999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          226 FSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ..+|+|++|+.+|++|++++|+..
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccH
Confidence            999999999999999999999754

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.8e-22  Score=149.06  Aligned_cols=107  Identities=25%  Similarity=0.369  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ..+.|+.++.+|+.+|+.|+|++|+.+|+++++++|+ ++.+|+++|.+++.+|++++|+.+|++|++++|+++.+|+++
T Consensus         6 ~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~   84 (159)
T d1a17a_           6 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   84 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHH
Confidence            3466899999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |.++..+|++++|+.+|+++++++|++.
T Consensus        85 g~~~~~~g~~~eA~~~~~~a~~~~p~~~  112 (159)
T d1a17a_          85 AASNMALGKFRAALRDYETVVKVKPHDK  112 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            9999999999999999999999999863

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.85  E-value=1.1e-20  Score=140.73  Aligned_cols=108  Identities=19%  Similarity=0.237  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV---------------SPTVYARRCLSYLMNDMPQEALGDAMQ  206 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~  206 (251)
                      .+..+..+++.|+.+|+.|+|.+|+..|++||+..|..               ...+|.|+|.||+++|+|++|+.+|.+
T Consensus        13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~   92 (153)
T d2fbna1          13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK   92 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhc
Confidence            45668899999999999999999999999999876531               124789999999999999999999999


Q ss_pred             HHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          207 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       207 al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ||+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++.
T Consensus        93 al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  135 (153)
T d2fbna1          93 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL  135 (153)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             cccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999999999999999864

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.7e-20  Score=141.10  Aligned_cols=108  Identities=11%  Similarity=0.098  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--------------SPTVYARRCLSYLMNDMPQEALGDAMQA  207 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a  207 (251)
                      .++.+..+++.|+.+|+.|+|++|+..|++||+..|..              ...+|.|+|.||+++|+|++|+.++++|
T Consensus         9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a   88 (170)
T d1p5qa1           9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA   88 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence            45568899999999999999999999999999987641              1357889999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          208 QVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       208 l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |+++|+++.+|+++|.+|+.+|+|++|+.+|+++++++|++.
T Consensus        89 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~  130 (170)
T d1p5qa1          89 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK  130 (170)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred             hhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999999999999999863

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.82  E-value=8.8e-20  Score=137.90  Aligned_cols=108  Identities=12%  Similarity=0.164  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--------------SPTVYARRCLSYLMNDMPQEALGDAMQA  207 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a  207 (251)
                      .+..+..++++|+.+|+.|+|.+|+.+|++||...|..              ...+|.|+|.||+.+|+|.+|+.+|+++
T Consensus        11 ~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            45668999999999999999999999999999764321              2357889999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          208 QVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       208 l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +.++|+++++|+++|.+|..+|+|++|+.+|.++++++|++.
T Consensus        91 l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~  132 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  132 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred             hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999999999999999864

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.1e-20  Score=133.51  Aligned_cols=103  Identities=17%  Similarity=0.162  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-------H
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP-------T  216 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~  216 (251)
                      ++|..++++|+.+|..|+|++|+.+|+++|+++|+ ++.+|.++|.+|..+|+|++|+.+|.+||.++|+++       .
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~   80 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            35888999999999999999999999999999998 999999999999999999999999999999999875       5


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537          217 ALYLQAACLFSLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       217 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  247 (251)
                      +|+++|.++..+++|++|+.+|.+++.++|.
T Consensus        81 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            7788889999999999999999999988765

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=2.1e-19  Score=135.84  Aligned_cols=105  Identities=20%  Similarity=0.217  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc----------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG----------------GTMVSPTVYARRCLSYLMNDMPQEALGDAMQA  207 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  207 (251)
                      ..+..++..|+.++..|+|.+|+..|++||+.                +|. ...+|.|+|.||.++|+|++|+.+|++|
T Consensus        25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~~~~~~Ai~~~~~a  103 (169)
T d1ihga1          25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV-ALSCVLNIGACKLKMSDWQGAVDSCLEA  103 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChh-hHHHHHHHHHHHHhhcccchhhhhhhhh
Confidence            34777899999999999999999999999864                333 5678999999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          208 QVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       208 l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++.
T Consensus       104 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~  145 (169)
T d1ihga1         104 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK  145 (169)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999999999999999864

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=8e-19  Score=140.31  Aligned_cols=106  Identities=11%  Similarity=-0.018  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ++..+..++.+|..+++.|+|++|+..|+++|+++|+ ++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+++
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            3456889999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |.++..+|++++|+..|+++++++|++
T Consensus       112 g~~~~~~g~~~~A~~~~~~al~~~p~~  138 (259)
T d1xnfa_         112 GIALYYGGRDKLAQDDLLAFYQDDPND  138 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhcccc
Confidence            999999999999999999999999975

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.76  E-value=4.1e-18  Score=119.90  Aligned_cols=93  Identities=12%  Similarity=0.039  Sum_probs=90.4

Q ss_pred             HHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhC
Q 025537          149 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSL  228 (251)
Q Consensus       149 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~  228 (251)
                      .++.|..+++.|++++|+..|+++++.+|+ ++.+|+++|.++..+|++++|+.++++|++++|+++.+|+.+|.+|..+
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            467899999999999999999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 025537          229 GMENDARETLKDGT  242 (251)
Q Consensus       229 ~~~~~A~~~~~~al  242 (251)
                      |++++|++.|++.|
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999986

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1e-17  Score=129.17  Aligned_cols=100  Identities=14%  Similarity=0.086  Sum_probs=92.8

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      ++..++++|..++..|+|++|+..|+++   .|. ++.+|+|+|.+|+.+|+|++|+.+|++||+++|+++.+|+++|.+
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~-~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~   79 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV---QDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   79 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCC-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            3667889999999999999999999873   444 789999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      +..+|+|++|+.+|++|++..|.+
T Consensus        80 ~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          80 YYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHhhccHHHHHHHHHHHHHhCccC
Confidence            999999999999999999987754

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-16  Score=123.33  Aligned_cols=102  Identities=18%  Similarity=0.103  Sum_probs=95.4

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----------
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-----------  214 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----------  214 (251)
                      +..+++.|..++..|+|++|+.+|++||+++|+ ++.+|+++|.+|.++|+|++|+.+|++|+...|.+           
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~  114 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  114 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhh
Confidence            456889999999999999999999999999998 99999999999999999999999999999876643           


Q ss_pred             -----hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          215 -----PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       215 -----~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                           ..+++++|.++..+|++++|++.|.+++++.|+.
T Consensus       115 ~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         115 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                 4789999999999999999999999999998874

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.70  E-value=4.8e-17  Score=121.05  Aligned_cols=106  Identities=16%  Similarity=0.114  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-----------SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP  212 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  212 (251)
                      ..+-.++..|+.++..|+|++|+..|++||++.|..           .+.+|+|+|.+|..+|+|++|+.++++++.+.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            345566677999999999999999999999987751           146899999999999999999999999998754


Q ss_pred             C-----------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          213 D-----------WPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       213 ~-----------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .           +..+|+++|.+|..+|++++|+.+|++++++.|+..
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            2           356899999999999999999999999999999754

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.6e-17  Score=118.63  Aligned_cols=99  Identities=8%  Similarity=-0.013  Sum_probs=90.3

Q ss_pred             HHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCC--hHHHHHHHHH
Q 025537          150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND---MPQEALGDAMQAQVVSPDW--PTALYLQAAC  224 (251)
Q Consensus       150 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~--~~~~~~~g~~  224 (251)
                      -+.++.+...++|++|.+.|.+++.++|. ++.+++|+|.++++.+   ++++|+..+++++..+|+.  +.+||.+|.+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            35678889999999999999999999998 9999999999998754   5567999999999998865  5699999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |..+|+|++|+.+|+++|+++|++.
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHhhhHHHHHHHHHHHHhCcCCH
Confidence            9999999999999999999999874

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.9e-16  Score=130.27  Aligned_cols=103  Identities=16%  Similarity=0.209  Sum_probs=99.1

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      +..+...|..++..|++++|+..|++++..+|+ ++.+|.++|.++..+|++++|+..|+++++++|+++.+|+.+|.+|
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  250 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  250 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            567788999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          226 FSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       226 ~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ..+|++++|+..|++||+++|++.
T Consensus       251 ~~~g~~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         251 INLGAHREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             HHCCCHHHHHHHHHHHHHhCCcCh
Confidence            999999999999999999999864

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.2e-17  Score=133.62  Aligned_cols=110  Identities=8%  Similarity=-0.033  Sum_probs=102.5

Q ss_pred             hHHHHHHHHHHHHHHhHHHhhc-CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Q 025537          139 WTSQMQETLNSKKHGDTAFRAK-DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTA  217 (251)
Q Consensus       139 ~~~~~~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  217 (251)
                      ..-+|.....+..+|..+...| ++++|+.+|+++++.+|+ +..+|+++|.++..+|++++|+.+++++++++|++..+
T Consensus        70 i~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a  148 (315)
T d2h6fa1          70 IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA  148 (315)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH
T ss_pred             HHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHH
Confidence            3347788999999999998876 599999999999999998 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          218 LYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       218 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |+++|.++..+|++++|+.+|+++|+++|++.
T Consensus       149 ~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~  180 (315)
T d2h6fa1         149 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN  180 (315)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHCCccH
Confidence            99999999999999999999999999999863

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.66  E-value=4.3e-17  Score=119.93  Aligned_cols=95  Identities=14%  Similarity=0.076  Sum_probs=85.7

Q ss_pred             hHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          154 DTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN----------DMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      ..+-+.+.|++|+..|++|++++|+ ++.+++++|.++..+          +.+++|+..|++|++++|+++.+|+++|.
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~   83 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   83 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHH
Confidence            3455678899999999999999999 999999999999865          45688999999999999999999999999


Q ss_pred             HHHhCCC-----------HHHHHHHHHHHHhhhhhcc
Q 025537          224 CLFSLGM-----------ENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       224 ~~~~~~~-----------~~~A~~~~~~al~l~P~~~  249 (251)
                      +|..+|+           |++|+.+|+++++++|++.
T Consensus        84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~  120 (145)
T d1zu2a1          84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  120 (145)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHH
Confidence            9988764           7999999999999999864

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.2e-16  Score=129.68  Aligned_cols=107  Identities=13%  Similarity=-0.059  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCChHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM-PQEALGDAMQAQVVSPDWPTALYL  220 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~  220 (251)
                      ++..++.+...|..+.+.+.+++|+.+|++||+++|. +..+|++||.++..+|. +++|+.+++++++++|++..+|++
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~  117 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  117 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            3556788888999999999999999999999999998 99999999999999875 999999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          221 QAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       221 ~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      +|.++..+|++++|+..|.++++++|++.
T Consensus       118 ~~~~~~~l~~~~eAl~~~~kal~~dp~n~  146 (315)
T d2h6fa1         118 RRVLVEWLRDPSQELEFIADILNQDAKNY  146 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             HhHHHHhhccHHHHHHHHhhhhhhhhcch
Confidence            99999999999999999999999999863

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.3e-15  Score=122.65  Aligned_cols=99  Identities=15%  Similarity=0.127  Sum_probs=96.0

Q ss_pred             HHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhC
Q 025537          149 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSL  228 (251)
Q Consensus       149 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~  228 (251)
                      .+++|..+++.|+|++|+..|+++|+.+|+ ++.+|.++|.++..+|++++|+..|.+|++++|+++.+|+.+|.+|..+
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccc
Confidence            357899999999999999999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhhhhc
Q 025537          229 GMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       229 ~~~~~A~~~~~~al~l~P~~  248 (251)
                      |++++|+..|++++.++|+.
T Consensus       101 ~~~~~A~~~~~~~~~~~~~~  120 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTPAY  120 (323)
T ss_dssp             TCHHHHHHHHHHHHHTSTTT
T ss_pred             ccccccccchhhHHHhccch
Confidence            99999999999999999974

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.7e-15  Score=124.57  Aligned_cols=106  Identities=15%  Similarity=0.035  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      .+..+..+...|..+...|++++|+..|++++...|. +...+..++.++..+|++++|+..++++++++|+++.+|+.+
T Consensus       267 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  345 (388)
T d1w3ba_         267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL  345 (388)
T ss_dssp             CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3445677888899999999999999999999999988 889999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |.+|..+|++++|+.+|+++++++|++
T Consensus       346 a~~~~~~g~~~~A~~~~~~al~l~P~~  372 (388)
T d1w3ba_         346 ASVLQQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999985

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.3e-15  Score=122.71  Aligned_cols=98  Identities=13%  Similarity=0.008  Sum_probs=94.4

Q ss_pred             HHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCC
Q 025537          150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLG  229 (251)
Q Consensus       150 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~  229 (251)
                      .+.|+.+++.|+|++|+..|+++++.+|+ ++.++..+|.+|..+|++++|+..++++++++|+++.+|+.+|.+|..+|
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence            36789999999999999999999999998 99999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhhhhc
Q 025537          230 MENDARETLKDGTNLEAKK  248 (251)
Q Consensus       230 ~~~~A~~~~~~al~l~P~~  248 (251)
                      ++++|+..|..+++.+|..
T Consensus        82 ~~~~A~~~~~~~~~~~~~~  100 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPDF  100 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTC
T ss_pred             ccccccccccccccccccc
Confidence            9999999999999998864

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.6e-14  Score=114.73  Aligned_cols=112  Identities=13%  Similarity=0.087  Sum_probs=100.4

Q ss_pred             hhhhHH-HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537          136 FQMWTS-QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW  214 (251)
Q Consensus       136 ~~~~~~-~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  214 (251)
                      ++.... +|..+..+...|..+...|++++|+..|+++++++|+ ++.+|.++|.++..+|++++|+..++++++++|++
T Consensus        60 ~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  138 (259)
T d1xnfa_          60 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND  138 (259)
T ss_dssp             HHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc
Confidence            433333 5667889999999999999999999999999999998 99999999999999999999999999999988776


Q ss_pred             hHH----------------------------------------------------------------------HHHHHHH
Q 025537          215 PTA----------------------------------------------------------------------LYLQAAC  224 (251)
Q Consensus       215 ~~~----------------------------------------------------------------------~~~~g~~  224 (251)
                      ...                                                                      |+.+|.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~  218 (259)
T d1xnfa_         139 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY  218 (259)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHH
Confidence            543                                                                      6778999


Q ss_pred             HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          225 LFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       225 ~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |..+|++++|+.+|++++..+|++
T Consensus       219 ~~~~g~~~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         219 YLSLGDLDSATALFKLAVANNVHN  242 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999975

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9.5e-15  Score=99.23  Aligned_cols=83  Identities=12%  Similarity=-0.012  Sum_probs=74.4

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV------SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY  219 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  219 (251)
                      ++..++.|..+++.|+|.+|+..|++|+++.|..      .+.++.++|.++.++|++++|+..+++||+++|+++.+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            5678899999999999999999999999885531      3678999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 025537          220 LQAACLFSL  228 (251)
Q Consensus       220 ~~g~~~~~~  228 (251)
                      +++.....+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998766544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.49  E-value=1.5e-13  Score=103.00  Aligned_cols=93  Identities=15%  Similarity=0.115  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ++..+..+.++|..+++.|+|++|+..|+++|+++|. ++.+|+++|.+|+.+|+|++|+.+|++|++++|++..++..+
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l  151 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  151 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4556778899999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHH
Q 025537          222 AACLFSLGMENDAR  235 (251)
Q Consensus       222 g~~~~~~~~~~~A~  235 (251)
                      +.++..+..+.++.
T Consensus       152 ~~~~~~l~~~~~~~  165 (169)
T d1ihga1         152 LKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988777766654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=9.5e-14  Score=97.83  Aligned_cols=83  Identities=10%  Similarity=-0.036  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      +|..+..+...|..++..|+|++|+..|+++++++|. ++.+|+++|.++..+|++++|+.+|+++++++|+++.++..+
T Consensus        33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  111 (117)
T d1elwa_          33 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL  111 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             CCcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            6777899999999999999999999999999999998 999999999999999999999999999999999999999998


Q ss_pred             HHHH
Q 025537          222 AACL  225 (251)
Q Consensus       222 g~~~  225 (251)
                      +.+.
T Consensus       112 ~~l~  115 (117)
T d1elwa_         112 QNME  115 (117)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=1.1e-12  Score=99.33  Aligned_cols=101  Identities=9%  Similarity=0.004  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC---------------------CHHHHHHHHHHHHhcCCHHHHH
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV---------------------SPTVYARRCLSYLMNDMPQEAL  201 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------------~~~~~~~~a~~~~~~~~~~~A~  201 (251)
                      ....+.+...|..++..|++++|+..|++|+++.+..                     ...++.+++.++..+|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            3456788899999999999999999999999987641                     1257899999999999999999


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 025537          202 GDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTN  243 (251)
Q Consensus       202 ~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  243 (251)
                      .++++++.++|.+..+|..++.+|..+|++.+|+..|+++.+
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999843

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.3e-13  Score=98.47  Aligned_cols=102  Identities=16%  Similarity=0.027  Sum_probs=88.1

Q ss_pred             hhhhHH-HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537          136 FQMWTS-QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW  214 (251)
Q Consensus       136 ~~~~~~-~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  214 (251)
                      ++.... +|..+..+...|..++..|++++|+..|.++|+++|. +..+|.++|.++..+|++++|+.++++++.++|++
T Consensus        33 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~  111 (159)
T d1a17a_          33 YSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD  111 (159)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            333333 6777999999999999999999999999999999998 99999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHH--hCCCHHHHHHHH
Q 025537          215 PTALYLQAACLF--SLGMENDARETL  238 (251)
Q Consensus       215 ~~~~~~~g~~~~--~~~~~~~A~~~~  238 (251)
                      +.++..++.+..  ..+.+++|+...
T Consensus       112 ~~~~~~l~~~~~~~~~~~~~~a~~~~  137 (159)
T d1a17a_         112 KDAKMKYQECNKIVKQKAFERAIAGD  137 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            999988887754  344466665543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-12  Score=98.36  Aligned_cols=90  Identities=14%  Similarity=0.087  Sum_probs=83.5

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      ...+.+.|..+++.|+|++|+.+++++|+++|. +..+|+++|.||..+|+|++|+.+|++|++++|+++.+...++.+.
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            456778999999999999999999999999998 9999999999999999999999999999999999999999999998


Q ss_pred             HhCCCHHHHHH
Q 025537          226 FSLGMENDARE  236 (251)
Q Consensus       226 ~~~~~~~~A~~  236 (251)
                      ..++++.+...
T Consensus       141 ~~~~~~~~~e~  151 (170)
T d1p5qa1         141 QRIRRQLAREK  151 (170)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88887776543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.41  E-value=1.7e-12  Score=97.03  Aligned_cols=98  Identities=15%  Similarity=0.139  Sum_probs=87.4

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  224 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~  224 (251)
                      .+..+.+.|.++++.|+|++|+.+++++++++|. +..+|+++|.++..+|+|++|+.+|.+++.++|+++.++..++.+
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC  141 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3567788999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHH-HHHHHHHHHh
Q 025537          225 LFSLGMEND-ARETLKDGTN  243 (251)
Q Consensus       225 ~~~~~~~~~-A~~~~~~al~  243 (251)
                      ...++.+.+ ..+.|.+.++
T Consensus       142 ~~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         142 QKKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHh
Confidence            988887754 4444444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.37  E-value=1.2e-12  Score=96.43  Aligned_cols=83  Identities=13%  Similarity=0.107  Sum_probs=77.6

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      +..+.++|..+++.|+|++|+.+|+++|+++|. +..+|+++|.+|..+|+|++|+.+|+++++++|+++.+...++.+.
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            456789999999999999999999999999998 9999999999999999999999999999999999999999998887


Q ss_pred             HhCC
Q 025537          226 FSLG  229 (251)
Q Consensus       226 ~~~~  229 (251)
                      ..++
T Consensus       146 ~kl~  149 (153)
T d2fbna1         146 NKLK  149 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4e-12  Score=90.71  Aligned_cols=70  Identities=19%  Similarity=0.078  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhccC
Q 025537          181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK  250 (251)
Q Consensus       181 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  250 (251)
                      +..+-++|.+++..|+|++|+.+|++||.++|+++.+++++|.+|..+|+|++|+.+|+++++++|++..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~   73 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE   73 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH
Confidence            4567789999999999999999999999999999999999999999999999999999999999998653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.30  E-value=2.1e-12  Score=94.28  Aligned_cols=92  Identities=13%  Similarity=-0.042  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHhHHHh----------hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC-----------HHHH
Q 025537          142 QMQETLNSKKHGDTAFR----------AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM-----------PQEA  200 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~----------~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~-----------~~~A  200 (251)
                      +|.++..+...|.+++.          .+.+++|+..|++||+++|+ ++.+|+++|.+|..+|+           |.+|
T Consensus        27 ~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A  105 (145)
T d1zu2a1          27 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA  105 (145)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHh
Confidence            67789999999999874          45668999999999999998 99999999999988764           7999


Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHH
Q 025537          201 LGDAMQAQVVSPDWPTALYLQAACLFSLGMENDA  234 (251)
Q Consensus       201 ~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A  234 (251)
                      +..|++|++++|++..++..++.+....+.+.++
T Consensus       106 ~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         106 TQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             hhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887665555554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.30  E-value=5.7e-12  Score=87.75  Aligned_cols=68  Identities=16%  Similarity=-0.066  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ..++++|.++++.|++.+|+..++++++++|+++.+|+.+|.++..+|++++|+.+|+++++++|++.
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   84 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI   84 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccc
Confidence            44678999999999999999999999999999999999999999999999999999999999999863

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=4.9e-12  Score=96.37  Aligned_cols=70  Identities=13%  Similarity=0.067  Sum_probs=67.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ++..+...|..+++.|+|++|+..|++||.++|+++.+|+++|.+|..+|+|++|+.+|++|++++|++.
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~   72 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV   72 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH
Confidence            5777889999999999999999999999999999999999999999999999999999999999999863

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.8e-12  Score=85.51  Aligned_cols=70  Identities=10%  Similarity=-0.137  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-------PTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      ++.-.+++|.++++.|+|.+|+..|++|+++.|.+       ..+++++|.++..+|++++|+.+|+++|+++|++.
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            45667899999999999999999999999986654       68899999999999999999999999999999864

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.5e-12  Score=89.69  Aligned_cols=92  Identities=12%  Similarity=-0.036  Sum_probs=77.4

Q ss_pred             hhhhHH-HHHHHHHHHHHHhHHHh---hcCHHHHHHHHHHHHccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537          136 FQMWTS-QMQETLNSKKHGDTAFR---AKDFSTAIDCYTQFIDGGTMVS-PTVYARRCLSYLMNDMPQEALGDAMQAQVV  210 (251)
Q Consensus       136 ~~~~~~-~~~~a~~~~~~g~~~~~---~~~~~~A~~~~~~al~~~p~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  210 (251)
                      ++.... +|..++.+++.|..+++   .+++++|+..|+++++.+|... ..+|+++|.+|+.+|+|++|+.+|++++++
T Consensus        22 Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          22 FQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            433333 56678899999999986   4566789999999999987512 458999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 025537          211 SPDWPTALYLQAACLFS  227 (251)
Q Consensus       211 ~p~~~~~~~~~g~~~~~  227 (251)
                      +|++..+...++.+...
T Consensus       102 ~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_         102 EPQNNQAKELERLIDKA  118 (122)
T ss_dssp             CTTCHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHH
Confidence            99999999988877654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=5.8e-11  Score=96.12  Aligned_cols=105  Identities=10%  Similarity=-0.019  Sum_probs=90.8

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGT-----MVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-----  214 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----  214 (251)
                      .++.|.+.|+.+...|+|++|+.+|.+|+++..     ...+.+|.+.|.||.++|++++|+..+++++.+.+..     
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~  115 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence            367888999999999999999999999998732     1145789999999999999999999999999987765     


Q ss_pred             -hHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhhhhcc
Q 025537          215 -PTALYLQAACLFS-LGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       215 -~~~~~~~g~~~~~-~~~~~~A~~~~~~al~l~P~~~  249 (251)
                       ..++..+|.+|.. +|++++|+..|++++++.+...
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~  152 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ  152 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence             6788899998865 7999999999999999987643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2e-11  Score=106.46  Aligned_cols=104  Identities=9%  Similarity=-0.118  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      ++..+..+.+.|..+.+.|++++|+..|.+++..+|   ..++.++|.++...|+|++|+.+|++|++++|++..+|+.+
T Consensus       116 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~L  192 (497)
T d1ya0a1         116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC---QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL  192 (497)
T ss_dssp             ---------------------------CCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHH
T ss_pred             ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            445567788889999999999999999998888775   36788889999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          222 AACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       222 g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      |.++...|++.+|+.+|.+||.++|..
T Consensus       193 g~~~~~~~~~~~A~~~y~ral~~~~~~  219 (497)
T d1ya0a1         193 AILASSKGDHLTTIFYYCRSIAVKFPF  219 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHSSSBCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999888753

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=2.5e-10  Score=93.88  Aligned_cols=97  Identities=6%  Similarity=-0.102  Sum_probs=63.3

Q ss_pred             HHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCChHHH-HHHHHHHHh
Q 025537          151 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM--PQEALGDAMQAQVVSPDWPTAL-YLQAACLFS  227 (251)
Q Consensus       151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~-~~~g~~~~~  227 (251)
                      ..|..+...|++++|+.+|+++++.+|+ +..+|.++|.++..+++  +++|+..+.+++.++|++..++ +..|.++..
T Consensus        78 ~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~  156 (334)
T d1dcea1          78 TEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA  156 (334)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHh
Confidence            3344444555566777777777777776 67777777666666554  6677777777777777666664 345666666


Q ss_pred             CCCHHHHHHHHHHHHhhhhhc
Q 025537          228 LGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       228 ~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+++++|+..++++++++|++
T Consensus       157 ~~~~~~Al~~~~~~i~~~p~~  177 (334)
T d1dcea1         157 AVAPAEELAFTDSLITRNFSN  177 (334)
T ss_dssp             CCCHHHHHHHHHTTTTTTCCC
T ss_pred             ccccHHHHHHHHHHHHcCCCC
Confidence            677777777777777777654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.09  E-value=2.8e-10  Score=90.99  Aligned_cols=95  Identities=11%  Similarity=0.043  Sum_probs=79.3

Q ss_pred             HhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH--------------
Q 025537          153 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL--------------  218 (251)
Q Consensus       153 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--------------  218 (251)
                      +..+++.|++++|+..|+++|+.+|+ +..++.+++.++...|++++|+..++++++++|++..++              
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence            45677889999999999999999998 999999999999999999999999999999888776654              


Q ss_pred             ---------------------HHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          219 ---------------------YLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       219 ---------------------~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                                           +..+.++...|++++|...+.++.++.|+.
T Consensus        82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence                                 444555667788888998898888888864

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.2e-09  Score=88.55  Aligned_cols=107  Identities=12%  Similarity=-0.024  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---
Q 025537          142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS----PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---  214 (251)
Q Consensus       142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---  214 (251)
                      +...++....+|..++..|++++|+.+|+++++..|...    ..++.++|.+|..+|++++|+..+.+++.+.|..   
T Consensus         8 ~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   87 (366)
T d1hz4a_           8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   87 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch
Confidence            344577777889999999999999999999999998722    3578899999999999999999999999976543   


Q ss_pred             ---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          215 ---PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       215 ---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                         ..+++.++.++...|++..|...+.+++++.+..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~  124 (366)
T d1hz4a_          88 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ  124 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Confidence               5678899999999999999999999999988754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=4.3e-10  Score=90.88  Aligned_cols=106  Identities=8%  Similarity=-0.199  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC-----CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCC---
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-----SPTVYARRCLSYLM-NDMPQEALGDAMQAQVVSPD---  213 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~---  213 (251)
                      ...+..+.+.|+.+.+.|++++|+.+|++++++.+..     ...++.++|.+|.. +|++++|+..+++|+++.+.   
T Consensus        74 ~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~  153 (290)
T d1qqea_          74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS  153 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            3457789999999999999999999999999885431     25678889988854 79999999999999987432   


Q ss_pred             ---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          214 ---WPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       214 ---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                         ...++.++|.++..+|+|++|+..|++++++.|+.
T Consensus       154 ~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence               25668999999999999999999999999998875

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=1.3e-09  Score=89.41  Aligned_cols=88  Identities=11%  Similarity=-0.027  Sum_probs=79.7

Q ss_pred             cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCC
Q 025537          160 KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM----------PQEALGDAMQAQVVSPDWPTALYLQAACLFSLG  229 (251)
Q Consensus       160 ~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~  229 (251)
                      +.+++|+.+|+++|+.+|+ +.++|+.|+.++..++.          +.+|+..++++++.+|+++.+|+.+|.++..++
T Consensus        43 ~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~  121 (334)
T d1dcea1          43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP  121 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred             cccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc
Confidence            3458999999999999999 99999998888766544          789999999999999999999999999999888


Q ss_pred             C--HHHHHHHHHHHHhhhhhc
Q 025537          230 M--ENDARETLKDGTNLEAKK  248 (251)
Q Consensus       230 ~--~~~A~~~~~~al~l~P~~  248 (251)
                      +  +++|+..+.++++++|++
T Consensus       122 ~~~~~~a~~~~~~al~~~~~~  142 (334)
T d1dcea1         122 EPNWARELELCARFLEADERN  142 (334)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTC
T ss_pred             cccHHHHHHHHHHHHhhCchh
Confidence            6  899999999999999975

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.3e-09  Score=90.81  Aligned_cols=83  Identities=13%  Similarity=-0.054  Sum_probs=78.5

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      ...+...|..+..+|+|++|+.+|.+|++++|+ ++.+|+++|.++...|++.+|+.+|.+|+..+|.++.++.+++.++
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            457888999999999999999999999999998 9999999999999999999999999999999999999999999988


Q ss_pred             HhCC
Q 025537          226 FSLG  229 (251)
Q Consensus       226 ~~~~  229 (251)
                      ....
T Consensus       231 ~~~~  234 (497)
T d1ya0a1         231 SKAL  234 (497)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            6544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=7.4e-09  Score=83.68  Aligned_cols=104  Identities=13%  Similarity=-0.004  Sum_probs=91.0

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------hCCCCh
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV---SPTVYARRCLSYLMNDMPQEALGDAMQAQV------VSPDWP  215 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------~~p~~~  215 (251)
                      .+..+...|..+...|++++|...+.++++..|..   ....+.++|.+++.+|++++|+..+++++.      ..|...
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  291 (366)
T d1hz4a_         212 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN  291 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHH
Confidence            35567788999999999999999999999987642   245678899999999999999999999984      456678


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537          216 TALYLQAACLFSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                      .+++.+|.+|..+|++++|+..|++|+++.+..
T Consensus       292 ~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~  324 (366)
T d1hz4a_         292 RNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT  324 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhc
Confidence            899999999999999999999999999997753

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.77  E-value=1.3e-08  Score=74.39  Aligned_cols=68  Identities=16%  Similarity=0.084  Sum_probs=59.7

Q ss_pred             HHHHHHH--HHHHHhcCCHHHHHHHHHHHHhhCCCCh------------HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537          181 PTVYARR--CLSYLMNDMPQEALGDAMQAQVVSPDWP------------TALYLQAACLFSLGMENDARETLKDGTNLEA  246 (251)
Q Consensus       181 ~~~~~~~--a~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P  246 (251)
                      +.+|..+  |..++..|+|++|+..|++||.+.|+.+            .+|.++|.+|..+|+|++|+.+|++++++.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3455554  7888889999999999999999998753            6799999999999999999999999999988


Q ss_pred             hc
Q 025537          247 KK  248 (251)
Q Consensus       247 ~~  248 (251)
                      +.
T Consensus        87 ~~   88 (156)
T d2hr2a1          87 RR   88 (156)
T ss_dssp             HH
T ss_pred             cc
Confidence            64

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=8.8e-08  Score=66.41  Aligned_cols=77  Identities=5%  Similarity=-0.162  Sum_probs=40.9

Q ss_pred             HHHHHHHhHHHhh---cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537          147 LNSKKHGDTAFRA---KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  223 (251)
Q Consensus       147 ~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~  223 (251)
                      +.-++-|-.+.+.   .+.++||.+++.+++.+|.....+++++|.+|+++|+|++|+.+++++|+++|++..+...+-.
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~  115 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  115 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence            3444444444432   3344566666666655554123555566666666666666666666666666666555544433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=3e-07  Score=74.25  Aligned_cols=99  Identities=13%  Similarity=0.007  Sum_probs=88.0

Q ss_pred             HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537          148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYL-MNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  226 (251)
Q Consensus       148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~  226 (251)
                      .+...++...+.|+++.|...|.++++..|. +...|...+.... ..|+.+.|...|++++...|+++..|...+..+.
T Consensus       136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~  214 (308)
T d2onda1         136 VYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  214 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            4567778888899999999999999999998 8888888887654 4689999999999999999999999999999999


Q ss_pred             hCCCHHHHHHHHHHHHhhhhh
Q 025537          227 SLGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       227 ~~~~~~~A~~~~~~al~l~P~  247 (251)
                      ..|+++.|...|++|++..|.
T Consensus       215 ~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         215 HLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             TTCCHHHHHHHHHHHHHSSSS
T ss_pred             HcCChHHHHHHHHHHHHhCCC
Confidence            999999999999999997663

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=5.1e-07  Score=72.83  Aligned_cols=103  Identities=9%  Similarity=-0.080  Sum_probs=91.0

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  225 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~  225 (251)
                      ...+...+......|++++|...|+++++..|.....+|...+....+.|+++.|...|.+|++..|.....|...|...
T Consensus        99 ~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e  178 (308)
T d2onda1          99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME  178 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34456667778889999999999999999999734568999999999999999999999999999999999999998875


Q ss_pred             -HhCCCHHHHHHHHHHHHhhhhhc
Q 025537          226 -FSLGMENDARETLKDGTNLEAKK  248 (251)
Q Consensus       226 -~~~~~~~~A~~~~~~al~l~P~~  248 (251)
                       ...|+.+.|...|+++++.+|++
T Consensus       179 ~~~~~~~~~a~~i~e~~l~~~p~~  202 (308)
T d2onda1         179 YYCSKDKSVAFKIFELGLKKYGDI  202 (308)
T ss_dssp             HHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHhccCHHHHHHHHHHHHHhhhhh
Confidence             45689999999999999999975

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=3e-07  Score=63.70  Aligned_cols=73  Identities=8%  Similarity=-0.006  Sum_probs=63.7

Q ss_pred             CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          177 TMVSPTVYARRCLSYLMND---MPQEALGDAMQAQVVSPDW-PTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       177 p~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      |.......|+.|.++.+..   +.++||..++.+++.+|.. .+++|.+|.+|+.+|+|++|..+++++|+++|+|.
T Consensus        31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            3336778888888888654   4579999999999999976 58999999999999999999999999999999874

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.49  E-value=1.3e-06  Score=68.45  Aligned_cols=97  Identities=14%  Similarity=0.117  Sum_probs=85.1

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWPTALYLQ  221 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~  221 (251)
                      +..+...|..++.+++|.+|+.+|++|.+..   +..+++++|.+|..    ..++..|+..+..+....  ++.+.+.+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l   76 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL   76 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence            5688999999999999999999999998875   78999999999997    678999999999987654  88999999


Q ss_pred             HHHHHh----CCCHHHHHHHHHHHHhhhhh
Q 025537          222 AACLFS----LGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       222 g~~~~~----~~~~~~A~~~~~~al~l~P~  247 (251)
                      |..+..    ....+.|...|+++.+..+.
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhh
Confidence            998875    56889999999999877653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.47  E-value=1.8e-07  Score=74.30  Aligned_cols=61  Identities=21%  Similarity=0.021  Sum_probs=57.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537          189 LSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  249 (251)
Q Consensus       189 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  249 (251)
                      .-.+..|++++|+..++++++.+|+++.++..+|.+|...|++++|+..|+++++++|++.
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~   64 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   64 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Confidence            3456789999999999999999999999999999999999999999999999999999863

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.40  E-value=8.8e-07  Score=65.99  Aligned_cols=69  Identities=13%  Similarity=0.208  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhhCCC
Q 025537          144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQA-------QVVSPD  213 (251)
Q Consensus       144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-------l~~~p~  213 (251)
                      .....+...|..+...|+|++|+.+++++++.+|. +..+|.+++.++..+|++.+|+..|+++       +.++|.
T Consensus        65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            44677889999999999999999999999999998 9999999999999999999999999998       557775

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.24  E-value=1.1e-05  Score=56.64  Aligned_cols=84  Identities=10%  Similarity=-0.052  Sum_probs=73.6

Q ss_pred             hhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----CC
Q 025537          158 RAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS----LG  229 (251)
Q Consensus       158 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~  229 (251)
                      ...++++|+.+|.++.+..   ++.+.+++|..|..    ..++.+|+..|++|.+.  .++.+.+.+|.+|..    ..
T Consensus        35 ~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~  109 (133)
T d1klxa_          35 SQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVK  109 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC
T ss_pred             cccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCC
Confidence            3568999999999999875   78999999999986    56799999999999886  589999999999987    56


Q ss_pred             CHHHHHHHHHHHHhhhh
Q 025537          230 MENDARETLKDGTNLEA  246 (251)
Q Consensus       230 ~~~~A~~~~~~al~l~P  246 (251)
                      ++++|+.+|++|.++..
T Consensus       110 d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         110 NEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             CHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHCCC
Confidence            89999999999987754

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.14  E-value=1.7e-05  Score=61.86  Aligned_cols=98  Identities=20%  Similarity=0.135  Sum_probs=83.4

Q ss_pred             HHHHHHHHHhHHHh----hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChH
Q 025537          145 ETLNSKKHGDTAFR----AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWPT  216 (251)
Q Consensus       145 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~  216 (251)
                      ....+...|..+..    ..+...+..+++.+.+..   ++.+.+++|.+|..    .+++++|+..|++|.+.  .++.
T Consensus       141 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~  215 (265)
T d1ouva_         141 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGG  215 (265)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred             ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHH
Confidence            35566778888875    567888999999998764   78999999999987    67999999999999987  4799


Q ss_pred             HHHHHHHHHHh----CCCHHHHHHHHHHHHhhhhh
Q 025537          217 ALYLQAACLFS----LGMENDARETLKDGTNLEAK  247 (251)
Q Consensus       217 ~~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~  247 (251)
                      +++++|.+|..    ..++++|..+|++|.++.++
T Consensus       216 a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         216 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            99999999986    44899999999999988764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.83  E-value=4.4e-05  Score=53.37  Aligned_cols=80  Identities=11%  Similarity=-0.049  Sum_probs=66.4

Q ss_pred             hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----CCCHHHH
Q 025537          159 AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS----LGMENDA  234 (251)
Q Consensus       159 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A  234 (251)
                      .+|+++|+.+|.++.+..   ++.+.++++.  ....++++|+..++++.+.  +++.+.+.+|..|..    ..++++|
T Consensus         6 ~kd~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             ccCHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHH
Confidence            358999999999999886   4455666654  3467899999999999875  589999999999886    5679999


Q ss_pred             HHHHHHHHhhh
Q 025537          235 RETLKDGTNLE  245 (251)
Q Consensus       235 ~~~~~~al~l~  245 (251)
                      +.+|+++.+..
T Consensus        79 ~~~~~~aa~~g   89 (133)
T d1klxa_          79 AQYYSKACGLN   89 (133)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHhhhhccC
Confidence            99999998764

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=3.5e-05  Score=61.83  Aligned_cols=37  Identities=14%  Similarity=0.261  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           40 DEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        40 ~~~~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +....+..+..+|++.+|..||||.+|++.|..+.+.
T Consensus       262 ~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         262 EALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             HHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHh
Confidence            4556678899999999999999999999999988654

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00012  Score=57.76  Aligned_cols=32  Identities=28%  Similarity=0.517  Sum_probs=27.9

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +.++..+|++.+|..|||+.++++.|+.+.+.
T Consensus       242 l~~li~~cl~~dp~~RPt~~~il~~Le~l~~~  273 (276)
T d1uwha_         242 MKRLMAECLKKKRDERPLFPQILASIELLARS  273 (276)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHc
Confidence            55667799999999999999999999988654

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=3.2e-05  Score=61.42  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=29.1

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKEA   77 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~   77 (251)
                      .+.++..+|++.+|+.||+|.+|++.|+.+.+..
T Consensus       241 ~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~p  274 (283)
T d1mqba_         241 AIYQLMMQCWQQERARRPKFADIVSILDKLIRAP  274 (283)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhCc
Confidence            4567788999999999999999999998876543

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0002  Score=56.04  Aligned_cols=32  Identities=16%  Similarity=0.449  Sum_probs=28.0

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      .+..+..+|++.+|..||+|.+|++.|+.+..
T Consensus       230 ~l~~li~~cl~~~p~~Rps~~~il~~L~~i~e  261 (263)
T d1sm2a_         230 HVYQIMNHCWKERPEDRPAFSRLLRQLAEIAE  261 (263)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence            35677889999999999999999999998754

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00018  Score=56.50  Aligned_cols=30  Identities=23%  Similarity=0.355  Sum_probs=26.3

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQ   74 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~   74 (251)
                      +..+..+|++.+|++||||.+|++.|+.+-
T Consensus       239 l~~li~~cl~~~P~~Rpt~~ei~~~L~~~f  268 (272)
T d1qpca_         239 LYQLMRLCWKERPEDRPTFDYLRSVLEDFF  268 (272)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHhhhhh
Confidence            556778999999999999999999998654

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00033  Score=56.13  Aligned_cols=32  Identities=22%  Similarity=0.404  Sum_probs=28.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      +.++..+|++.+|+.||+|.+|++.|+.+...
T Consensus       263 l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~  294 (311)
T d1r0pa_         263 LYEVMLKCWHPKAEMRPSFSELVSRISAIFST  294 (311)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence            55677899999999999999999999988654

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.64  E-value=6e-05  Score=60.29  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=28.1

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+.++..+|++.+|.+||+|.+|++.|+.+.+.
T Consensus       261 ~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~~  293 (299)
T d1jpaa_         261 ALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRN  293 (299)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcC
Confidence            355677899999999999999999999876544

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00044  Score=55.28  Aligned_cols=30  Identities=23%  Similarity=0.351  Sum_probs=26.2

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+.++..+|++.+|+.||+|.+|++.|+..
T Consensus       263 ~l~~li~~cl~~~P~~RPs~~~il~~L~~~  292 (308)
T d1p4oa_         263 MLFELMRMCWQYNPKMRPSFLEIISSIKEE  292 (308)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHGGG
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence            466778899999999999999999998754

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.40  E-value=0.00061  Score=54.16  Aligned_cols=30  Identities=27%  Similarity=0.345  Sum_probs=26.9

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      .+..+..+|++.+|+.||||.+|++.|+++
T Consensus       270 ~~~~li~~cl~~~P~~RPt~~ev~~~L~~i  299 (301)
T d1lufa_         270 ELYNLMRLCWSKLPADRPSFCSIHRILQRM  299 (301)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence            356788899999999999999999999876

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.001  Score=53.05  Aligned_cols=29  Identities=17%  Similarity=0.387  Sum_probs=25.9

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      +.++..+|++.+|.+||+|.+++++|++.
T Consensus       277 l~~Li~~cl~~dP~~RPs~~~il~~L~~~  305 (311)
T d1t46a_         277 MYDIMKTCWDADPLKRPTFKQIVQLIEKQ  305 (311)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence            56677899999999999999999999864

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.21  E-value=0.00012  Score=58.20  Aligned_cols=33  Identities=18%  Similarity=0.367  Sum_probs=28.0

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+.++..+|++.+|..||||.++++.|+.+...
T Consensus       244 ~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~~~  276 (287)
T d1opja_         244 KVYELMRACWQWNPSDRPSFAEIHQAFETMFQE  276 (287)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence            356677899999999999999999999876544

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.00021  Score=55.86  Aligned_cols=31  Identities=19%  Similarity=0.321  Sum_probs=27.0

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      +.++..+|++.+|..||+|.++++.|+.++.
T Consensus       229 ~~~li~~cl~~dP~~Rps~~~l~~~L~~i~~  259 (262)
T d1byga_         229 VYEVMKNCWHLDAAMRPSFLQLREQLEHIKT  259 (262)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccCHhHCcCHHHHHHHHHHHHh
Confidence            4466779999999999999999999988754

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0017  Score=51.16  Aligned_cols=30  Identities=20%  Similarity=0.264  Sum_probs=26.0

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQ   74 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~   74 (251)
                      +..+..+|++.+|.+||+|.+|++.|+.+.
T Consensus       241 l~~li~~cl~~~p~~RPs~~~i~~~L~~~~  270 (285)
T d1u59a_         241 LYALMSDCWIYKWEDRPDFLTVEQRMRACY  270 (285)
T ss_dssp             HHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            456778999999999999999999997653

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.00023  Score=56.38  Aligned_cols=31  Identities=29%  Similarity=0.385  Sum_probs=26.5

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQ   74 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~   74 (251)
                      .+.++..+|++.+|+.||+|.+|+..|+...
T Consensus       242 ~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~  272 (285)
T d1fmka3         242 SLHDLMCQCWRKEPEERPTFEYLQAFLEDYF  272 (285)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHcccCHhHCcCHHHHHHHHhhhh
Confidence            3556788999999999999999999987643

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.00034  Score=56.16  Aligned_cols=33  Identities=18%  Similarity=0.528  Sum_probs=27.8

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+..+|++.+|..||++.+++..|..+.+.
T Consensus       241 ~~~~li~~cl~~dP~~RPs~~eil~~l~~~~~~  273 (317)
T d1xkka_         241 DVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  273 (317)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCCChhhCcCHHHHHHHHHHHHhC
Confidence            355677899999999999999999999876543

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0012  Score=53.11  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=23.9

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLM   71 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~   71 (251)
                      +..+..+|++.+|+.||||.++++.|.
T Consensus       296 l~~li~~cl~~dP~~RPt~~ei~~~L~  322 (325)
T d1rjba_         296 IYIIMQSCWAFDSRKRPSFPNLTSFLG  322 (325)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence            556777999999999999999999984

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.03  E-value=0.0027  Score=49.58  Aligned_cols=30  Identities=17%  Similarity=0.258  Sum_probs=25.1

Q ss_pred             HHHHHhcccCcCCCCCC-CHHHHHHHHHhhh
Q 025537           45 LVRLASRCLQSEARERP-NAKSLVISLMSLQ   74 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP-~m~~v~~~L~~~~   74 (251)
                      +..+..+|++.+|..|| ++.++.+.|.++.
T Consensus       245 l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~  275 (277)
T d1o6ya_         245 LDAVVLKALAKNPENRYQTAAEMRADLVRVH  275 (277)
T ss_dssp             HHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCHhHCHhHHHHHHHHHHHHh
Confidence            44556699999999999 8999999988764

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.015  Score=45.96  Aligned_cols=33  Identities=27%  Similarity=0.532  Sum_probs=28.0

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE   76 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~   76 (251)
                      .+..+..+|++.+|++||+|.+|++.|..+.+.
T Consensus       254 ~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~  286 (309)
T d1fvra_         254 EVYDLMRQCWREKPYERPSFAQILVSLNRMLEE  286 (309)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence            355667799999999999999999999887543

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.014  Score=45.94  Aligned_cols=30  Identities=27%  Similarity=0.412  Sum_probs=26.9

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQ   74 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~   74 (251)
                      +.++..+|++.+|..|||+.+|++.|+.+.
T Consensus       266 l~~li~~cl~~dP~~Rps~~eil~~L~~i~  295 (299)
T d1fgka_         266 LYMMMRDCWHAVPSQRPTFKQLVEDLDRIV  295 (299)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCHhHCcCHHHHHHHHHHHh
Confidence            566788999999999999999999998764

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.02  Score=44.82  Aligned_cols=31  Identities=26%  Similarity=0.401  Sum_probs=27.0

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      +.++..+|++.+|..|||+.++++.|+.+.+
T Consensus       266 l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq  296 (299)
T d1ywna1         266 MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  296 (299)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence            5567789999999999999999999987643

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.29  E-value=0.0071  Score=47.03  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=20.4

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +.++..+|++.+|++|||+.++++
T Consensus       242 ~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         242 VKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHccCCHhHCcCHHHHhC
Confidence            445677999999999999999864

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.025  Score=43.38  Aligned_cols=29  Identities=24%  Similarity=0.503  Sum_probs=25.0

Q ss_pred             HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537           44 ELVRLASRCLQSEARERPNAKSLVISLMS   72 (251)
Q Consensus        44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~   72 (251)
                      .+..+..+|++.+|++|||+.+++..|..
T Consensus       229 ~l~~li~~cl~~dP~~RPt~~eil~~L~d  257 (258)
T d1k2pa_         229 KVYTIMYSCWHEKADERPTFKILLSNILD  257 (258)
T ss_dssp             HHHHHHHHTTCSSGGGSCCHHHHHHHHHC
T ss_pred             HHHHHHHHHccCCHhHCcCHHHHHHHhhC
Confidence            35567789999999999999999998854

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.85  E-value=0.014  Score=45.18  Aligned_cols=59  Identities=20%  Similarity=0.302  Sum_probs=35.0

Q ss_pred             CEEEeecCCC-CCchh---hhHHHHcCCccccccccccCCCCHHHHHHHHHHHhcccCcCCCCCCCHHHHHH
Q 025537            1 MLLDLLSGKH-IPPSH---ALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus         1 vlLEl~tgr~-~~~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +|.||+||+. .....   +...+..+...     .+...++. +   +..+..+|++.+|..||++.++++
T Consensus       203 ilyel~tg~~Pf~~~~~~~~~~~i~~~~~~-----~~~~~~s~-~---l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         203 LLYELCALMPPFTAFSQKELAGKIREGKFR-----RIPYRYSD-E---LNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             HHHHHHHSSCSCCCSSHHHHHHHHHHTCCC-----CCCTTSCH-H---HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHhhCCCCCCCCCHHHHHHHHHcCCCC-----CCCcccCH-H---HHHHHHHHcCCChhHCcCHHHHHh
Confidence            3568888887 43221   22333333221     12222333 2   445667999999999999999864

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.29  E-value=0.048  Score=42.16  Aligned_cols=29  Identities=17%  Similarity=0.383  Sum_probs=25.2

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      +..+..+|++.+|..||+|.+|...|+..
T Consensus       239 ~~~li~~cl~~dp~~RPs~~~i~~~L~~~  267 (277)
T d1xbba_         239 MYDLMNLCWTYDVENRPGFAAVELRLRNY  267 (277)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHhhCH
Confidence            45677799999999999999999988754

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=0.044  Score=42.18  Aligned_cols=31  Identities=23%  Similarity=0.441  Sum_probs=26.7

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSLQK   75 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~   75 (251)
                      +..+..+|+..+|..|||+.+|++.|..+..
T Consensus       238 ~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~  268 (273)
T d1mp8a_         238 LYSLMTKCWAYDPSRRPRFTELKAQLSTILE  268 (273)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            5566779999999999999999999987643

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.039  Score=42.60  Aligned_cols=29  Identities=17%  Similarity=0.343  Sum_probs=25.1

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537           45 LVRLASRCLQSEARERPNAKSLVISLMSL   73 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~   73 (251)
                      +.++..+|++.+|+.|||+.+|.+.|...
T Consensus       244 l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         244 IYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            55677899999999999999999888653

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.20  E-value=0.2  Score=30.58  Aligned_cols=30  Identities=17%  Similarity=0.301  Sum_probs=24.3

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHc
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFID  174 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~  174 (251)
                      -|..+-.++..+.+.|+|++||+++.+|.+
T Consensus         7 ~AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           7 LAHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            356667888889999999999998877653

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.023  Score=43.79  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=20.2

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..|||+.++++
T Consensus       231 ~~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         231 ARDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHccCCHhHCcCHHHHHc
Confidence            445666999999999999999875

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.86  E-value=0.024  Score=44.06  Aligned_cols=62  Identities=23%  Similarity=0.336  Sum_probs=35.6

Q ss_pred             CEEEeecCCC-CCchh---hhHHHHcCCccccccccccCCCCHHHHHHHHHHHhcccCcCCCCCCCHHHHHH
Q 025537            1 MLLDLLSGKH-IPPSH---ALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus         1 vlLEl~tgr~-~~~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      ||.||+||+. .....   ....+..+... ...+.. ...+.    .+..+..+|++.+|..||++.+|++
T Consensus       204 ilyeml~g~~Pf~~~~~~~~~~~i~~~~~~-~~~~~~-~~~s~----~~~~li~~~L~~~p~~R~s~~eil~  269 (277)
T d1phka_         204 IMYTLLAGSPPFWHRKQMLMLRMIMSGNYQ-FGSPEW-DDYSD----TVKDLVSRFLVVQPQKRYTAEEALA  269 (277)
T ss_dssp             HHHHHHHSSCSSCCSSHHHHHHHHHHTCCC-CCTTTG-GGSCH----HHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             hhhhhccCCCCCCCCCHHHHHHHHHhCCCC-CCCccc-ccCCH----HHHHHHHHHccCChhHCcCHHHHHc
Confidence            3568889888 54322   22333333221 111111 12333    3556677999999999999998754

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=0.036  Score=42.87  Aligned_cols=24  Identities=13%  Similarity=0.106  Sum_probs=19.7

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..|||+.++++
T Consensus       236 ~~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         236 PLALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             HHHHHHHHcCCChhHCcCHHHHhc
Confidence            345667999999999999998854

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.95  E-value=0.057  Score=42.44  Aligned_cols=24  Identities=4%  Similarity=0.115  Sum_probs=20.3

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..|||+.++++
T Consensus       240 ~~~li~~~L~~dP~~R~s~~eil~  263 (307)
T d1a06a_         240 AKDFIRHLMEKDPEKRFTCEQALQ  263 (307)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHccCCHhHCcCHHHHhc
Confidence            455667999999999999998865

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.73  E-value=0.02  Score=45.27  Aligned_cols=24  Identities=25%  Similarity=0.564  Sum_probs=20.3

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..|||+.++++
T Consensus       243 ~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         243 FRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HHHHHHHHCcCChhHCcCHHHHHh
Confidence            445667999999999999999865

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.05  E-value=0.27  Score=31.14  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=24.9

Q ss_pred             HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      .|..+..+|..+-..|+|++|+.+|.+||+.
T Consensus        14 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3666777888888889999999999888754

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.41  E-value=0.049  Score=42.41  Aligned_cols=24  Identities=17%  Similarity=0.371  Sum_probs=19.8

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..|||+.++++
T Consensus       245 ~~~li~~~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         245 FKDFLKKCLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             HHHHHHHHccCChhHCcCHHHHhc
Confidence            445666999999999999998754

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.21  E-value=0.42  Score=29.10  Aligned_cols=26  Identities=23%  Similarity=0.147  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025537          183 VYARRCLSYLMNDMPQEALGDAMQAQ  208 (251)
Q Consensus       183 ~~~~~a~~~~~~~~~~~A~~~~~~al  208 (251)
                      .+..+|..+++.|.|++||++.++|.
T Consensus        10 ~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1          10 QQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44555666666666666666555543

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.93  E-value=0.04  Score=43.08  Aligned_cols=24  Identities=29%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..||++.++++
T Consensus       246 ~~~li~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         246 FRDFLNRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             HHHHHHHHccCChhHCcCHHHHhc
Confidence            445666999999999999998754

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=87.53  E-value=0.087  Score=42.18  Aligned_cols=24  Identities=8%  Similarity=0.047  Sum_probs=20.0

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..|||+.++++
T Consensus       256 ~~~li~~~L~~dP~~R~t~~eil~  279 (350)
T d1koaa2         256 GKDFIRKLLLADPNTRMTIHQALE  279 (350)
T ss_dssp             HHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHccCChhHCcCHHHHhc
Confidence            445566999999999999998865

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=87.29  E-value=0.1  Score=41.84  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=20.4

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|++.+|..|||+.++++
T Consensus       259 ~~~li~~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         259 AKDFIKNLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHccCChhHCcCHHHHhc
Confidence            455677999999999999998865

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.96  E-value=0.3  Score=29.68  Aligned_cols=33  Identities=12%  Similarity=0.293  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537          143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG  175 (251)
Q Consensus       143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~  175 (251)
                      .+.|..+..+|..+=..|+|++|+.+|..|++.
T Consensus         8 l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~   40 (77)
T d1wr0a1           8 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY   40 (77)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344666677777777788888888888777654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=84.66  E-value=2.5  Score=34.21  Aligned_cols=89  Identities=16%  Similarity=0.030  Sum_probs=61.2

Q ss_pred             HhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHH
Q 025537          153 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMEN  232 (251)
Q Consensus       153 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~  232 (251)
                      +..++..+..+.|...+........  +......++...+..+++..+...+...-.-....+...|-+|.++..+|+.+
T Consensus       259 a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~  336 (450)
T d1qsaa1         259 AWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREA  336 (450)
T ss_dssp             HHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChh
Confidence            3344556667778777777665553  33333333334556789998888777643322345788899999999999999


Q ss_pred             HHHHHHHHHHh
Q 025537          233 DARETLKDGTN  243 (251)
Q Consensus       233 ~A~~~~~~al~  243 (251)
                      +|...|..+..
T Consensus       337 ~A~~~~~~~a~  347 (450)
T d1qsaa1         337 EAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHHHT
T ss_pred             hHHHHHHHHhc
Confidence            99999998764

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.79  E-value=0.15  Score=40.07  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=20.7

Q ss_pred             HHHHHhcccCcCCCCCCCHHHHHH
Q 025537           45 LVRLASRCLQSEARERPNAKSLVI   68 (251)
Q Consensus        45 ~~~va~~C~~~~p~~RP~m~~v~~   68 (251)
                      +..+..+|+..+|..||+..++++
T Consensus       234 ~~~li~~~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         234 AMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHccCChhHCcCHHHHhc
Confidence            455677999999999999999976

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.31  E-value=0.85  Score=38.13  Aligned_cols=50  Identities=0%  Similarity=-0.009  Sum_probs=39.9

Q ss_pred             HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC
Q 025537          146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM  196 (251)
Q Consensus       146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~  196 (251)
                      ++...+++..++.+|+|.-|.++.+.++..+|+ +..+...++.+|-++|.
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~-~~~ar~l~a~~~~~l~~  479 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEVVNRLVFAEPD-NRAARELQADALEQLGY  479 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHH
Confidence            667778888888888888888888888888887 88888777777776654