Citrus Sinensis ID: 025539

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWVKIIKEL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccEEEEHHHHHHHHcEEEEEEEcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccEEEEEEEEEEEEEEEEEcccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGEWVIGAFINLVGSIAINFGtnllklghierekhstldsdgtngkhslkpIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVsfgnhqspvytpeqlaekysnITFLVYCLILIFIVAIYHYIYRKGenllavsgqdnrywrmLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWVKIIKEL
Flexible Loop (DISEMBL)
MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHstldsdgtngKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWVKIIKEL
Low Complexity Region (SEG)
MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWVKIIKEL
Disordered region (IsUnstruct)
***WVIGAFINLVGSIAINFGTNLLKLGHIE****************SLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWVKII***
Disordered Region (DISOPRED)
*GEWVIGAFINLVGSIAINFGTNLLKLGHI******************LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGN*****YTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWVKIIKEL
Disordered Region (DISEMBL)
MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWVKIIKEL
Disordered Region (DISPRO)
*GEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHS********GKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWVKIIKEL
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWVKIIKEL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q9H841	368	NIPA-like protein 2 OS=Ho	yes	no	0.633	0.432	0.230	0.0001
Q91WC7	383	NIPA-like protein 2 OS=Mu	yes	no	0.868	0.569	0.212	0.0001
Q5RD30	406	NIPA-like protein 3 OS=Po	no	no	0.844	0.522	0.228	0.0002
Q6P499	406	NIPA-like protein 3 OS=Ho	no	no	0.844	0.522	0.228	0.0002
Q8BZF2	406	Magnesium transporter NIP	no	no	0.553	0.342	0.246	0.0002
Q0D2K0	466	Magnesium transporter NIP	no	no	0.529	0.285	0.265	0.0008

>sp|Q9H841|NPAL2_HUMAN NIPA-like protein 2 OS=Homo sapiens GN=NIPAL2 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 19/178 (10%)

Query: 2   GEW-------VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVH 54
           G+W       + G  + ++G++ I+   N+ K  H++  +           +H  +P   
Sbjct: 38  GDWYRRNQIHLFGVLLAILGNLVISISLNIQKYSHLQLAQQ----------EHP-RPYFK 86

Query: 55  YHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVA 114
              W  G+L+  +G   NF ++G+A  +L+A LG V    +   S       +    L+ 
Sbjct: 87  SVLWWGGVLLMAVGETGNFAAYGFAPITLIAPLGCVSVTGSAIISVTFLKDNLRASDLLG 146

Query: 115 TAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIY-RKG 171
           T     G   LV+F  + +   +   +        FL+Y ++ I I  I  Y Y RKG
Sbjct: 147 TTLAFAGTYLLVNFAPNITQAISARTVQYYLVGWQFLIYVILEILIFCILLYFYKRKG 204

Homo sapiens (taxid: 9606)

>sp|Q91WC7|NPAL2_MOUSE NIPA-like protein 2 OS=Mus musculus GN=Nipal2 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 100/245 (40%), Gaps = 27/245 (11%)

Query: 7   GAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFL 66
           G  + ++G++ I+   N+ K  H+   +           K   KP      W  G+L+  
Sbjct: 50  GVLLAILGNLVISISLNIQKYSHLHLAQ-----------KEHPKPYFKSVLWLSGVLLTA 98

Query: 67  LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126
           LG   NF ++G A  +L+A LG +    +   S     + +    L+       G   LV
Sbjct: 99  LGETGNFAAYGVAPITLIAPLGCMSVTGSAIISVLFLKENLRASDLLGMTLAFAGTYLLV 158

Query: 127 SFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIY-RKGENLLAVSGQDNRYW 185
           +F  + +   +   +   +    FLVY ++ I +  I  Y + RKG   + V        
Sbjct: 159 NFAPNITQAISARTVQYYFVGWQFLVYVILEILVFCILLYFHKRKGMKHIVVL------- 211

Query: 186 RMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWV 245
                     +   + S +V+  K++S ++ L+++   QL     Y ML++  ++  F V
Sbjct: 212 --------LTLVALLASLTVISVKAVSGMITLSVTGKMQLTYAIFYIMLVIMIASCVFQV 263

Query: 246 KIIKE 250
           K + +
Sbjct: 264 KFLNQ 268

Mus musculus (taxid: 10090)

>sp|Q5RD30|NPAL3_PONAB NIPA-like protein 3 OS=Pongo abelii GN=NIPAL3 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 37/249 (14%)

Query: 3   EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI 62
           E +IGA + + G + ++   NL K  HI              G    +      +W +G+
Sbjct: 32  ENLIGALLAIFGHLVVSIALNLQKYCHIR-----------LAGSKDPRAYFKTKTWWLGL 80

Query: 63  LVFLLGNCLNFISFGYAAQSLLAALGSVQFV-SNIAFSYFVFNKMVTVKVL-------VA 114
            + LLG    F S+ +A  SL+  L +V  + S I    F+  K      L       V 
Sbjct: 81  FLMLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFLRRYILSFVG 140

Query: 115 TAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGE 172
               V+G   LV+F  +     T E +     +  FL+Y L  I++F + +Y Y  +   
Sbjct: 141 CGLAVVGTYLLVTFAPNSREKMTGENVTRHLVSWPFLLYMLVEIILFCLLLYFYKEKNAN 200

Query: 173 NLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYS 232
           N++ +                 ++   +GS +V+  K+++ +L L++    QL     Y 
Sbjct: 201 NIVVI----------------LLLVALLGSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYV 244

Query: 233 MLLLFFSTA 241
           M +   +TA
Sbjct: 245 MFVCMVATA 253

Pongo abelii (taxid: 9601)

>sp|Q6P499|NPAL3_HUMAN NIPA-like protein 3 OS=Homo sapiens GN=NIPAL3 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 37/249 (14%)

Query: 3   EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI 62
           E +IGA + + G + ++   NL K  HI              G    +      +W +G+
Sbjct: 32  ENLIGALLAIFGHLVVSIALNLQKYCHIR-----------LAGSKDPRAYFKTKTWWLGL 80

Query: 63  LVFLLGNCLNFISFGYAAQSLLAALGSVQFV-SNIAFSYFVFNKMVTVKVL-------VA 114
            + LLG    F S+ +A  SL+  L +V  + S I    F+  K      L       V 
Sbjct: 81  FLMLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFLRRYVLSFVG 140

Query: 115 TAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGE 172
               V+G   LV+F  +     T E +     +  FL+Y L  I++F + +Y Y  +   
Sbjct: 141 CGLAVVGTYLLVTFAPNSHEKMTGENVTRHLVSWPFLLYMLVEIILFCLLLYFYKEKNAN 200

Query: 173 NLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYS 232
           N++ +                 ++   +GS +V+  K+++ +L L++    QL     Y 
Sbjct: 201 NIVVI----------------LLLVALLGSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYV 244

Query: 233 MLLLFFSTA 241
           M +   +TA
Sbjct: 245 MFVCMVATA 253

Homo sapiens (taxid: 9606)

>sp|Q8BZF2|NIPA4_MOUSE Magnesium transporter NIPA4 OS=Mus musculus GN=Nipal4 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 27/166 (16%)

Query: 58  WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAF 117
           W  G+     G   NF ++ +A  +++  LG++  + +  FS +   + + +   +    
Sbjct: 107 WWAGMATMSAGEVANFGAYAFAPATVVTPLGALSVLISAIFSSYCLGESLNLLGKLGCVI 166

Query: 118 IVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVY-------CLILIFIVAIYHYIYRK 170
            + G+  +V     +  V T  ++A K  +  F+V+       CLILIFIVA  +     
Sbjct: 167 CMAGSTVMVIHAPKEEKVTTVAEMASKMKDTGFIVFAVLLVVSCLILIFIVAPRY----- 221

Query: 171 GENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLR 216
                   GQ N    +L+   Y I+   +GSFSV   K L   +R
Sbjct: 222 --------GQRN----ILI---YIIICSVIGSFSVTAVKGLGVTIR 252

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Ba(2+), Mn(2+), Sr(2+) and Co(2+) but to a much less extent than Mg(2+). May be a receptor for ligands (trioxilins A3 and B3) from the hepoxilin pathway.

Mus musculus (taxid: 10090)

>sp|Q0D2K0|NIPA4_HUMAN Magnesium transporter NIPA4 OS=Homo sapiens GN=NIPAL4 PE=1 SV=3

 Score = 44.3 bits (103), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 29/162 (17%)

Query: 58  WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQ-FVSNIAFSYFVFNKMVTVKVLVATA 116
           W  G L    G   NF ++ +A  +++  LG++   +S I  SYF+   +  +  L    
Sbjct: 167 WWAGFLTMAAGEVANFGAYAFAPATVVTPLGALSVLISAILSSYFLRESLNLLGKL-GCV 225

Query: 117 FIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVY-------CLILIFIVAIYHYIYR 169
             V G+  +V     +  V T  ++A K  +  F+V+       CLILIF++A  +    
Sbjct: 226 ICVAGSTVMVIHAPEEEKVTTIMEMASKMKDTGFIVFAVLLLVSCLILIFVIAPRY---- 281

Query: 170 KGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSL 211
                    GQ N    +L+   Y I+   +G+FSV   K L
Sbjct: 282 ---------GQRN----ILI---YIIICSVIGAFSVAAVKGL 307

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Ba(2+), Mn(2+), Sr(2+) and Co(2+) but to a much less extent than Mg(2+) (By similarity). May be a receptor for ligands (trioxilins A3 and B3) from the hepoxilin pathway.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
255543473	1198	pentatricopeptide repeat-containing prot	0.996	0.208	0.824	1e-119
224128700	444	predicted protein [Populus trichocarpa]	0.996	0.563	0.816	1e-115
356559514	443	PREDICTED: uncharacterized protein LOC10	0.992	0.562	0.804	1e-111
255645549	394	unknown [Glycine max]	0.992	0.631	0.804	1e-111
356498637	441	PREDICTED: uncharacterized protein LOC10	0.992	0.564	0.800	1e-111
388515427	442	unknown [Lotus japonicus]	0.992	0.563	0.804	1e-111
297818206	441	hypothetical protein ARALYDRAFT_484434 [	0.984	0.560	0.780	1e-110
449520012	444	PREDICTED: uncharacterized LOC101223129	0.996	0.563	0.780	1e-110
15231596	441	uncharacterized protein [Arabidopsis tha	0.984	0.560	0.780	1e-109
296082240	442	unnamed protein product [Vitis vinifera]	0.996	0.565	0.780	1e-109

>gi|255543473|ref|XP_002512799.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223547810|gb|EEF49302.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/251 (82%), Positives = 232/251 (92%), Gaps = 1/251 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWVIGAFINL GSIAINFGTNLLKLGH ERE+HSTLD+DG +GK  LKPI+H+ +WR+
Sbjct: 1   MGEWVIGAFINLFGSIAINFGTNLLKLGHTERERHSTLDNDGASGKSHLKPIIHFQTWRI 60

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GI+ F LGNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV +KMVTVKVLVATAFIVL
Sbjct: 61  GIIFFFLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLHKMVTVKVLVATAFIVL 120

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPVYTPEQLAEKYSN+TFL+YC+ILI +VA++HY+YR+GE L A+SGQ
Sbjct: 121 GNVFLVAFGNHQSPVYTPEQLAEKYSNMTFLLYCMILILVVALHHYLYRRGEILAAISGQ 180

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW+MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLF S
Sbjct: 181 DLRPYWQMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFLS 240

Query: 240 TAGFWVKIIKE 250
           TAGFW+  + E
Sbjct: 241 TAGFWMTRLNE 251

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128700|ref|XP_002320397.1| predicted protein [Populus trichocarpa] gi|222861170|gb|EEE98712.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/251 (81%), Positives = 230/251 (91%), Gaps = 1/251 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWVIGAFINL GSIAINFGTNLLKLGH ERE+HST D+ GT+GK  +KPI+++ +WRV
Sbjct: 1   MGEWVIGAFINLFGSIAINFGTNLLKLGHNERERHSTQDNVGTSGKVPVKPIIYFQTWRV 60

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GIL F LGNCLNFISFGYAAQSLLAALGS+QFVSNIAF+YFV NKMVTVKVLVATAFIVL
Sbjct: 61  GILFFFLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAYFVLNKMVTVKVLVATAFIVL 120

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GNIFLV+FGNHQSPVYTPEQLAEKYSN+TFL YCL+LI +VA++HYIYR+GE +LA+SGQ
Sbjct: 121 GNIFLVAFGNHQSPVYTPEQLAEKYSNMTFLFYCLVLILLVALHHYIYRRGEIILAISGQ 180

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW+MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLAMS+ YQLHSWFTYS+LLLF S
Sbjct: 181 DLRPYWQMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLAMSSDYQLHSWFTYSILLLFLS 240

Query: 240 TAGFWVKIIKE 250
           TAGFW+  + E
Sbjct: 241 TAGFWMTRLNE 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559514|ref|XP_003548044.1| PREDICTED: uncharacterized protein LOC100812264 [Glycine max]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/251 (80%), Positives = 223/251 (88%), Gaps = 2/251 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEW++GAFINL GSIAINFGTNLLKLGH ERE+H  L SDG NGK +LKPI+++ SWR+
Sbjct: 1   MGEWIVGAFINLFGSIAINFGTNLLKLGHNERERH-LLGSDGVNGKMNLKPIIYFQSWRI 59

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GI+ F LGNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV NKMVTVKVLVATAFIVL
Sbjct: 60  GIVFFFLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLNKMVTVKVLVATAFIVL 119

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPVYTPEQL EKY+NI FL+Y L LI IVA++H IY++GE L AVSG 
Sbjct: 120 GNVFLVAFGNHQSPVYTPEQLTEKYTNIAFLLYLLALISIVALHHSIYKRGELLFAVSGH 179

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLF S
Sbjct: 180 DLRPYWSMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFLS 239

Query: 240 TAGFWVKIIKE 250
           TAGFW+  + E
Sbjct: 240 TAGFWMTRLNE 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645549|gb|ACU23269.1| unknown [Glycine max]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/251 (80%), Positives = 223/251 (88%), Gaps = 2/251 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEW++GAFINL GSIAINFGTNLLKLGH ERE+H  L SDG NGK +LKPI+++ SWR+
Sbjct: 1   MGEWIVGAFINLFGSIAINFGTNLLKLGHNERERH-LLGSDGVNGKMNLKPIIYFQSWRI 59

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GI+ F LGNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV NKMVTVKVLVATAFIVL
Sbjct: 60  GIVFFFLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLNKMVTVKVLVATAFIVL 119

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPVYTPEQL EKY+NI FL+Y L LI IVA++H IY++GE L AVSG 
Sbjct: 120 GNVFLVAFGNHQSPVYTPEQLTEKYTNIAFLLYLLALISIVALHHSIYKRGELLFAVSGH 179

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLF S
Sbjct: 180 DLRPYWSMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFLS 239

Query: 240 TAGFWVKIIKE 250
           TAGFW+  + E
Sbjct: 240 TAGFWMTRLNE 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498637|ref|XP_003518156.1| PREDICTED: uncharacterized protein LOC100778788 [Glycine max]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/251 (80%), Positives = 224/251 (89%), Gaps = 2/251 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEW++GAFINL GSIAINFGTNLLKLGH ERE+H  L SDG NGK +LKPI+++ SWR+
Sbjct: 1   MGEWIVGAFINLFGSIAINFGTNLLKLGHNERERH-LLGSDGVNGKMNLKPIIYFQSWRI 59

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GI+ F LGNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV NKMVTVKVLVATAFIVL
Sbjct: 60  GIVFFFLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLNKMVTVKVLVATAFIVL 119

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPVYTPEQL EKY+NI+FL+Y L LI IVA++H IY++GE LL VSG 
Sbjct: 120 GNVFLVAFGNHQSPVYTPEQLTEKYTNISFLLYLLALISIVALHHSIYKRGELLLGVSGH 179

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLA+SNGYQLHSWFTYSMLLLF S
Sbjct: 180 DLRPYWSMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLALSNGYQLHSWFTYSMLLLFLS 239

Query: 240 TAGFWVKIIKE 250
           TAGFW+  + E
Sbjct: 240 TAGFWMTRLNE 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515427|gb|AFK45775.1| unknown [Lotus japonicus]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/251 (80%), Positives = 222/251 (88%), Gaps = 2/251 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEW++GAFINL GSIAINFGTNLLKLGH ERE+H  L SDG NGK +LKPI+ + SWR+
Sbjct: 1   MGEWIVGAFINLFGSIAINFGTNLLKLGHNERERH-VLGSDGLNGKMTLKPIISFQSWRI 59

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GIL F LGNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV NKMVTVKVLVATAFIVL
Sbjct: 60  GILFFFLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLNKMVTVKVLVATAFIVL 119

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GNIFLV+FGNHQSPV+TPEQL EKY+N+ FL+Y L LI IVA++H  Y++GE LLAVSG 
Sbjct: 120 GNIFLVAFGNHQSPVFTPEQLTEKYTNVAFLLYLLALIVIVALHHSGYKRGELLLAVSGH 179

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLF S
Sbjct: 180 DLRPYWNMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFLS 239

Query: 240 TAGFWVKIIKE 250
           TAGFW+  + E
Sbjct: 240 TAGFWMTRLNE 250

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818206|ref|XP_002876986.1| hypothetical protein ARALYDRAFT_484434 [Arabidopsis lyrata subsp. lyrata] gi|297322824|gb|EFH53245.1| hypothetical protein ARALYDRAFT_484434 [Arabidopsis lyrata subsp. lyrata]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/251 (78%), Positives = 224/251 (89%), Gaps = 4/251 (1%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWVIGAFIN+ GS+AINFGTNLLKLGH ERE+ +  D     GK  LKPI+H+ +WRV
Sbjct: 1   MGEWVIGAFINIFGSVAINFGTNLLKLGHNERERLALQDG---GGKMPLKPIIHFQTWRV 57

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GILVFLLGNCLNFISFGYAAQSLLAALGS+QFVSNIAF+Y V NKMVTVKVLVATAFIVL
Sbjct: 58  GILVFLLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAYVVLNKMVTVKVLVATAFIVL 117

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPV+TPEQLAEKYSN+TFLVYC ILI IVA++H++YRKGE L+++ GQ
Sbjct: 118 GNVFLVAFGNHQSPVFTPEQLAEKYSNVTFLVYCGILILIVAVHHFLYRKGEVLISIPGQ 177

Query: 181 D-NRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           + + YW+MLLPFSYA+VSGA+GS SVLFAKSLSNLLRLAMS+ YQLHSWFTYSMLLLF S
Sbjct: 178 EISSYWKMLLPFSYAVVSGAIGSCSVLFAKSLSNLLRLAMSSSYQLHSWFTYSMLLLFLS 237

Query: 240 TAGFWVKIIKE 250
           TAGFW+  + E
Sbjct: 238 TAGFWMTRLNE 248

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520012|ref|XP_004167028.1| PREDICTED: uncharacterized LOC101223129 [Cucumis sativus]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/251 (78%), Positives = 225/251 (89%), Gaps = 1/251 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWVIGA INL GS+AINFGTNLLKLGH EREKHS L+++G+ GK  +KPI+++ +WRV
Sbjct: 1   MGEWVIGAVINLFGSLAINFGTNLLKLGHNEREKHSMLENNGSIGKTPMKPIIYFQTWRV 60

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GI  F++GNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV +KMVTVKV+VATAFIVL
Sbjct: 61  GITFFIIGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLHKMVTVKVMVATAFIVL 120

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPVYTPEQL EKY NITFL+YC+ILI +VA++H IYR+GE LL+VSGQ
Sbjct: 121 GNVFLVAFGNHQSPVYTPEQLVEKYGNITFLLYCVILILVVALHHSIYRRGELLLSVSGQ 180

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW MLLPFSYAIVSGA+GS SVLFAKSLS LLRLAMS+ YQLHSWFTYS+LLLF S
Sbjct: 181 DLRPYWHMLLPFSYAIVSGAIGSCSVLFAKSLSILLRLAMSSDYQLHSWFTYSLLLLFLS 240

Query: 240 TAGFWVKIIKE 250
           TAGFW+  + E
Sbjct: 241 TAGFWMARLNE 251

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231596|ref|NP_189301.1| uncharacterized protein [Arabidopsis thaliana] gi|30688438|ref|NP_850634.1| uncharacterized protein [Arabidopsis thaliana] gi|42572543|ref|NP_974367.1| uncharacterized protein [Arabidopsis thaliana] gi|20260460|gb|AAM13128.1| unknown protein [Arabidopsis thaliana] gi|30387531|gb|AAP31931.1| At3g26670 [Arabidopsis thaliana] gi|110742092|dbj|BAE98977.1| hypothetical protein [Arabidopsis thaliana] gi|332643672|gb|AEE77193.1| uncharacterized protein [Arabidopsis thaliana] gi|332643673|gb|AEE77194.1| uncharacterized protein [Arabidopsis thaliana] gi|332643674|gb|AEE77195.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/251 (78%), Positives = 222/251 (88%), Gaps = 4/251 (1%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWVIGAFIN+ GS+AINFGTNLLKLGH ERE+ +  D     GK  LKPI+H  +WRV
Sbjct: 1   MGEWVIGAFINIFGSVAINFGTNLLKLGHNERERLALQDG---GGKMPLKPIIHNQTWRV 57

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GILVFLLGNCLNFISFGYAAQSLLAALGS+QFVSNIAF+Y V NKMVTVKVLVATAFIVL
Sbjct: 58  GILVFLLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAYVVLNKMVTVKVLVATAFIVL 117

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPV+TPEQLAEKYSN+TFLVYC ILI IVA++H++YRKGE L++  GQ
Sbjct: 118 GNVFLVAFGNHQSPVFTPEQLAEKYSNVTFLVYCGILILIVAVHHFLYRKGEVLISTPGQ 177

Query: 181 D-NRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           + + YW+MLLPFSYA+VSGA+GS SVLFAKSLSNLLRLAMS+ YQLHSWFTYSMLLLF S
Sbjct: 178 EISSYWKMLLPFSYAVVSGAIGSCSVLFAKSLSNLLRLAMSSSYQLHSWFTYSMLLLFLS 237

Query: 240 TAGFWVKIIKE 250
           TAGFW+  + E
Sbjct: 238 TAGFWMTRLNE 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082240|emb|CBI21245.3| unnamed protein product [Vitis vinifera]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/251 (78%), Positives = 219/251 (87%), Gaps = 1/251 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWV+GA IN+ GSIAINFGTNLLKLGH ER +   LD++G NGK   KPI+++ +WRV
Sbjct: 1   MGEWVVGAIINVFGSIAINFGTNLLKLGHNERGRSLLLDNNGANGKLVPKPIIYFQTWRV 60

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           G+L F LGNCLNFISFGYAAQSLLAALGS+QFVSNIAF+YFV NKMV+VKVLVATAFIVL
Sbjct: 61  GLLFFSLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAYFVLNKMVSVKVLVATAFIVL 120

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GNIFLV+FGNHQSPV+TPEQLAEK+SN TFLVYCLILI +VA+ HYIYR+GE   A+SGQ
Sbjct: 121 GNIFLVAFGNHQSPVFTPEQLAEKFSNATFLVYCLILILVVALNHYIYRRGEMQFAISGQ 180

Query: 181 D-NRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D   YW MLLPFSYA VSGAVGS SVLFAKSLSNLLRLAMS+GYQLHSWFTYSMLL F S
Sbjct: 181 DLEPYWHMLLPFSYATVSGAVGSCSVLFAKSLSNLLRLAMSSGYQLHSWFTYSMLLCFLS 240

Query: 240 TAGFWVKIIKE 250
           TAGFW+  + E
Sbjct: 241 TAGFWMARLNE 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
TAIR|locus:2090822	441	AT3G26670 "AT3G26670" [Arabido	0.984	0.560	0.784	1.3e-102
UNIPROTKB|F1NBN3	339	NPAL2 "Uncharacterized protein	0.749	0.554	0.252	1.8e-09
RGD|1564315	383	Nipal2 "NIPA-like domain conta	0.872	0.571	0.221	2.4e-09
MGI|MGI:1924488	383	Nipal2 "NIPA-like domain conta	0.872	0.571	0.225	1.8e-08
ZFIN|ZDB-GENE-040718-379	387	nipal3 "NIPA-like domain conta	0.872	0.565	0.235	3.3e-08
UNIPROTKB|Q9H841	368	NIPAL2 "NIPA-like protein 2" [	0.872	0.595	0.221	3.8e-08
UNIPROTKB|A2RTY8	383	NPAL2 "NPAL2 protein" [Homo sa	0.872	0.571	0.221	4.2e-08
WB|WBGene00021820	397	nipa-1 [Caenorhabditis elegans	0.653	0.413	0.248	5.9e-08
MGI|MGI:1921802	410	Nipal3 "NIPA-like domain conta	0.884	0.541	0.245	6.3e-08
UNIPROTKB|E1BR96	408	NIPAL3 "Uncharacterized protei	0.856	0.526	0.232	1.4e-07

TAIR|locus:2090822 AT3G26670 "AT3G26670" [Arabidopsis thaliana (taxid:3702)]

 Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
 Identities = 197/251 (78%), Positives = 223/251 (88%)

Query:     1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
             MGEWVIGAFIN+ GS+AINFGTNLLKLGH ERE+ +    DG  GK  LKPI+H  +WRV
Sbjct:     1 MGEWVIGAFINIFGSVAINFGTNLLKLGHNERERLAL--QDG-GGKMPLKPIIHNQTWRV 57

Query:    61 GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
             GILVFLLGNCLNFISFGYAAQSLLAALGS+QFVSNIAF+Y V NKMVTVKVLVATAFIVL
Sbjct:    58 GILVFLLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAYVVLNKMVTVKVLVATAFIVL 117

Query:   121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
             GN+FLV+FGNHQSPV+TPEQLAEKYSN+TFLVYC ILI IVA++H++YRKGE L++  GQ
Sbjct:   118 GNVFLVAFGNHQSPVFTPEQLAEKYSNVTFLVYCGILILIVAVHHFLYRKGEVLISTPGQ 177

Query:   181 D-NRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
             + + YW+MLLPFSYA+VSGA+GS SVLFAKSLSNLLRLAMS+ YQLHSWFTYSMLLLF S
Sbjct:   178 EISSYWKMLLPFSYAVVSGAIGSCSVLFAKSLSNLLRLAMSSSYQLHSWFTYSMLLLFLS 237

Query:   240 TAGFWVKIIKE 250
             TAGFW+  + E
Sbjct:   238 TAGFWMTRLNE 248

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NBN3 NPAL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 51/202 (25%), Positives = 94/202 (46%)

Query:    49 LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVT 108
             L+P      W  G ++  +G   NF ++G+A  +L+A LG V  + +   S     K + 
Sbjct:    37 LQPFYRSKLWWCGAVLLGIGELGNFTAYGFAPIALVAPLGCVSIIGSAFISVIFLKKTMR 96

Query:   109 VKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIY 168
                ++  A  V+G   LV+F  + S   T  Q+     +  FLVY ++ I I  I  Y Y
Sbjct:    97 AADILGGALAVVGTYLLVTFAPNVSQQLTARQVQNDLVSWPFLVYVILEIIIFCILLYFY 156

Query:   169 RKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSW 228
             ++     AV     ++  +LL     ++   + S +V+  K++++++ L+     QL   
Sbjct:   157 KRK----AV-----KHIVVLL-----MMVALLASLTVIAVKAVASMIILSAKGKMQLTYP 202

Query:   229 FTYSMLLLFFSTAGFWVKIIKE 250
               Y ML+L  ++  F VK + +
Sbjct:   203 VFYIMLILMATSCVFQVKFLNQ 224

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|1564315 Nipal2 "NIPA-like domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 55/248 (22%), Positives = 108/248 (43%)

Query:     5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILV 64
             + G  + ++G++ I+   N+ K  H+   +           K   KP      W  G+L+
Sbjct:    48 LFGVLLAILGNLVISISLNIQKYSHLHLAQ-----------KEHPKPYFKSVLWLSGVLL 96

Query:    65 FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124
               +G   NF ++G A  +L+A LG V    +   S     + +    L+       G   
Sbjct:    97 MAIGETGNFAAYGVAPITLIAPLGCVSVTGSAVISVIFLKENLRASDLLGMTLAFAGTYL 156

Query:   125 LVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSGQDN 182
             LV+F  + +   +   +   +    FLVY +  IL+F + +Y +  RKG+  + +     
Sbjct:   157 LVNFAPNITQAISARTIQYYFVGWQFLVYMILEILVFCILLYFH-KRKGKKHIVI----- 210

Query:   183 RYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAG 242
                  LL     +V+  + S +V+  K++S ++ L+++   QL     Y ML++  ++  
Sbjct:   211 -----LL----TLVA-LLASLTVISVKAVSGMITLSVTGKMQLTYAIFYIMLVIMIASCV 260

Query:   243 FWVKIIKE 250
             F VK + +
Sbjct:   261 FQVKFLNQ 268

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1924488 Nipal2 "NIPA-like domain containing 2" [Mus musculus (taxid:10090)]

 Score = 151 (58.2 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 56/248 (22%), Positives = 107/248 (43%)

Query:     5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILV 64
             + G  + ++G++ I+   N+ K  H+   +           K   KP      W  G+L+
Sbjct:    48 LFGVLLAILGNLVISISLNIQKYSHLHLAQ-----------KEHPKPYFKSVLWLSGVLL 96

Query:    65 FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124
               LG   NF ++G A  +L+A LG +    +   S     + +    L+       G   
Sbjct:    97 TALGETGNFAAYGVAPITLIAPLGCMSVTGSAIISVLFLKENLRASDLLGMTLAFAGTYL 156

Query:   125 LVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSGQDN 182
             LV+F  + +   +   +   +    FLVY +  IL+F + +Y +  RKG   + V     
Sbjct:   157 LVNFAPNITQAISARTVQYYFVGWQFLVYVILEILVFCILLYFH-KRKGMKHIVV----- 210

Query:   183 RYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAG 242
                  LL     +V+  + S +V+  K++S ++ L+++   QL     Y ML++  ++  
Sbjct:   211 -----LL----TLVA-LLASLTVISVKAVSGMITLSVTGKMQLTYAIFYIMLVIMIASCV 260

Query:   243 FWVKIIKE 250
             F VK + +
Sbjct:   261 FQVKFLNQ 268

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-040718-379 nipal3 "NIPA-like domain containing 3" [Danio rerio (taxid:7955)]

 Score = 149 (57.5 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 59/251 (23%), Positives = 113/251 (45%)

Query:    11 NLVGSIAINFGTNLLKLG-HIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGN 69
             NL+G++   FG  L+ +   I+++ H TL      G    +   +  +W +G+++ +LG 
Sbjct:    20 NLIGTLLAIFGNLLVSISVSIQKQSHVTLA-----GNKDPRQYYYTKTWLLGLVLMVLGE 74

Query:    70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVL---VAT----AFIVLG 121
                F+S+ +A  SL+A L +V  +S+    + F+  K    + L   + T    A    G
Sbjct:    75 GALFVSYAFAPLSLIAPLNAVSVISSSILGFLFLREKWKAQEFLKRYILTFLGCAMTAGG 134

Query:   122 NIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSG 179
                 V+FG +       E + +   +  FL+Y L  I+ F + +Y+Y  R    L+ +  
Sbjct:   135 TYLFVTFGPNSHEKLNAENIVKHVISWPFLLYLLLGIIAFCLVLYYYKQRNANYLVLI-- 192

Query:   180 QDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
                    +LL    A++    GS +V+  K++S ++ L++    QL     Y M +   +
Sbjct:   193 -------LLL---VALL----GSVTVITVKAVSGMIVLSIVGPLQLSYPIFYVMFVCMVA 238

Query:   240 TAGFWVKIIKE 250
             T  F    + +
Sbjct:   239 TIVFQASFLAQ 249

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q9H841 NIPAL2 "NIPA-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 55/248 (22%), Positives = 107/248 (43%)

Query:     5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILV 64
             + G  + ++G++ I+   N+ K  H++  +           +H  +P      W  G+L+
Sbjct:    48 LFGVLLAILGNLVISISLNIQKYSHLQLAQQ----------EHP-RPYFKSVLWWGGVLL 96

Query:    65 FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124
               +G   NF ++G+A  +L+A LG V    +   S       +    L+ T     G   
Sbjct:    97 MAVGETGNFAAYGFAPITLIAPLGCVSVTGSAIISVTFLKDNLRASDLLGTTLAFAGTYL 156

Query:   125 LVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSGQDN 182
             LV+F  + +   +   +        FL+Y +  ILIF + +Y Y  RKG   + +     
Sbjct:   157 LVNFAPNITQAISARTVQYYLVGWQFLIYVILEILIFCILLYFY-KRKGMKHMVI----- 210

Query:   183 RYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAG 242
                  LL    AI++    S +V+  K++S ++  ++ +  QL     Y M ++  ++  
Sbjct:   211 -----LLTL-VAILA----SLTVISVKAVSGMITFSVMDKMQLTYPIFYIMFIIMIASCV 260

Query:   243 FWVKIIKE 250
             F VK + +
Sbjct:   261 FQVKFLNQ 268

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A2RTY8 NPAL2 "NPAL2 protein" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 55/248 (22%), Positives = 107/248 (43%)

Query:     5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILV 64
             + G  + ++G++ I+   N+ K  H++  +           +H  +P      W  G+L+
Sbjct:    48 LFGVLLAILGNLVISISLNIQKYSHLQLAQQ----------EHP-RPYFKSVLWWGGVLL 96

Query:    65 FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124
               +G   NF ++G+A  +L+A LG V    +   S       +    L+ T     G   
Sbjct:    97 MAVGETGNFAAYGFAPITLIAPLGCVSVTGSAIISVTFLKDNLRASDLLGTTLAFAGTYL 156

Query:   125 LVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSGQDN 182
             LV+F  + +   +   +        FL+Y +  ILIF + +Y Y  RKG   + +     
Sbjct:   157 LVNFAPNITQAISARTVQYYLVGWQFLIYVILEILIFCILLYFY-KRKGMKHMVI----- 210

Query:   183 RYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAG 242
                  LL    AI++    S +V+  K++S ++  ++ +  QL     Y M ++  ++  
Sbjct:   211 -----LLTL-VAILA----SLTVISVKAVSGMITFSVMDKMQLTYPIFYIMFIIMIASCV 260

Query:   243 FWVKIIKE 250
             F VK + +
Sbjct:   261 FQVKFLNQ 268

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

WB|WBGene00021820 nipa-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 147 (56.8 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 44/177 (24%), Positives = 80/177 (45%)

Query:    58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAF 117
             W +G++   +G   NF ++ +A  SL+  LG++  +     S  + N+ + +   +  A 
Sbjct:   106 WWMGVITMGIGEACNFAAYAFAPASLVTPLGALSVIVTAILSSRMLNERLNLLGSIGCAL 165

Query:   118 IVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAV 177
              +LG+  +V     +  V +   LA K  +  FL+Y +ILI +   +  +Y     +   
Sbjct:   166 CLLGSTVIVIHSPKEEEVGSMADLALKMKDAGFLIY-VILIILATGFIVVY-----VAPR 219

Query:   178 SGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSML 234
              G  N    +L+   Y  V   +GS SVL  K L   ++  ++   Q  +W TY  L
Sbjct:   220 YGHSN----ILV---YISVCSLIGSLSVLSVKGLGLAIKETLAGNQQFTNWLTYFWL 269

GO:0016020 "membrane" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0008344 "adult locomotory behavior" evidence=IMP

MGI|MGI:1921802 Nipal3 "NIPA-like domain containing 3" [Mus musculus (taxid:10090)]

 Score = 147 (56.8 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 63/257 (24%), Positives = 110/257 (42%)

Query:     3 EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI 62
             E +IGA + + G + ++   NL K  HI              G    +      +W +G+
Sbjct:    36 ENLIGALLAIFGHLVVSIALNLQKYCHIRLA-----------GSKDPRAYFKTKTWWLGL 84

Query:    63 LVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNK-----MVTVKVL--VA 114
             L+ LLG    F S+ +A  SL+  L +V  +++      F+  K      V   VL  V 
Sbjct:    85 LLLLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFVRRYVLSFVG 144

Query:   115 TAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYR-KGEN 173
                 ++G   LV+F  +     T E +A    +  FL+Y L+ I +  +  Y Y+ +  N
Sbjct:   145 CGLAIVGTYLLVTFAPNSHEKMTGENIARHLVSWPFLLYMLVAIVLFCLLLYFYKERNAN 204

Query:   174 LLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSM 233
              + V         +LL     +V+  +GS +V+  K++S +L L++    QL     Y M
Sbjct:   205 SIVV---------ILL-----LVA-LLGSMTVVTVKAVSGMLVLSIQGNLQLDYPIFYVM 249

Query:   234 LLLFFSTAGFWVKIIKE 250
              +   +TA +    + E
Sbjct:   250 FVCMVATAIYQATFLSE 266

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

UNIPROTKB|E1BR96 NIPAL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 144 (55.7 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 58/250 (23%), Positives = 107/250 (42%)

Query:     3 EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI 62
             E +IGA + + G + I+   NL K  HI              G    +      +W  G+
Sbjct:    34 ENLIGALLAIFGHLVISIALNLQKYSHIRLA-----------GSKDSRAYFKTKTWWCGL 82

Query:    63 LVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVL-------VA 114
              + +LG    F S+ +A  SL+  L +V  +++      F+  K    + L       V 
Sbjct:    83 FLLVLGELGVFSSYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKEFLRRYVLSFVG 142

Query:   115 TAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYR-KGEN 173
                 ++G   L++FG +     T E +     +  FL+Y L+ I I  +  Y Y+ K  N
Sbjct:   143 CGLAIVGTYLLITFGPNSHEKMTGENITRHLVSWPFLLYMLVEIIIFCLLLYFYKEKNAN 202

Query:   174 LLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSM 233
              + +         +LL     +V+  +GS +V+  K+++ ++ +++    QL+    Y M
Sbjct:   203 YIVI---------ILL-----LVA-LLGSMTVVTVKAVAGMIVVSIRGNLQLNYPIFYIM 247

Query:   234 LLLFFSTAGF 243
             L+   +TA F
Sbjct:   248 LVCMIATAVF 257

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XIV0798 hypothetical protein (444 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
pfam05653	300	pfam05653, Mg_trans_NIPA, Magnesium transporter NI	1e-08

>gnl|CDD|114381 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 45/233 (19%), Positives = 95/233 (40%), Gaps = 23/233 (9%)

Query: 5   VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILV 64
            IG  + +  SI I     + K G +   +       G  G   LK  +    W  G+L 
Sbjct: 6   YIGLILAVSSSIFIGSSFIIKKKGLLRLARGGM--RAGEGGYGYLKEWL----WWAGLLT 59

Query: 65  FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124
            ++G   NF ++ +A  +L+  LG++  + +   S F  N+ + +   +     ++G+  
Sbjct: 60  MIVGEAANFAAYAFAPATLVTPLGALSVIISAVLSSFFLNEKLNLFGKLGCVLCIVGSTV 119

Query: 125 LVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSGQDN 182
           +V     +  + +  ++    ++  FLVY +  + + ++ I+    R G+  + V     
Sbjct: 120 IVIHAPKEQEIESVREVWNLATDPGFLVYVILVVGVVLILIFFVEPRHGQTNILV----- 174

Query: 183 RYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLL 235
                     Y  +   +GS +V+  K+L   ++L  S   QL     +  L+
Sbjct: 175 ----------YITICSLIGSLTVMSVKALGIAIKLTFSGKNQLGYPQFWIFLV 217

NIPA (nonimprinted in Prader-Willi/Angelman syndrome) is a family of integral membrane proteins which function as magnesium transporters. Length = 300

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	100.0
KOG2922	335	consensus Uncharacterized conserved protein [Funct	100.0
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.19
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.96
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.6
COG2510	140	Predicted membrane protein [Function unknown]	98.59
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	98.44
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.32
PRK09541	110	emrE multidrug efflux protein; Reviewed	98.08
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.05
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.03
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.95
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.92
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.8
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.71
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.69
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.68
PLN00411	358	nodulin MtN21 family protein; Provisional	97.62
PRK15430	296	putative chloramphenical resistance permease RarD;	97.57
PRK11272	292	putative DMT superfamily transporter inner membran	97.51
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.49
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.48
PRK11689	295	aromatic amino acid exporter; Provisional	97.45
COG2076	106	EmrE Membrane transporters of cations and cationic	97.44
PRK11431	105	multidrug efflux system protein; Provisional	97.33
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.29
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.24
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.22
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.12
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	97.1
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.04
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.01
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.82
PRK15430	296	putative chloramphenical resistance permease RarD;	96.8
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	96.71
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.49
PRK11689	295	aromatic amino acid exporter; Provisional	96.39
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.38
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	96.12
PRK11272	292	putative DMT superfamily transporter inner membran	96.12
KOG2765	416	consensus Predicted membrane protein [Function unk	96.01
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	95.93
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	95.87
KOG3912	372	consensus Predicted integral membrane protein [Gen	95.36
PLN00411	358	nodulin MtN21 family protein; Provisional	94.95
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	94.62
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	94.41
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	94.24
KOG4831	125	consensus Unnamed protein [Function unknown]	93.69
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	93.62
COG2962	293	RarD Predicted permeases [General function predict	93.56
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	93.53
PRK13499	345	rhamnose-proton symporter; Provisional	91.9
PRK10532	293	threonine and homoserine efflux system; Provisiona	91.9
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	90.33
COG1742	109	Uncharacterized conserved protein [Function unknow	89.85
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	88.86
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	88.06
PRK02237	109	hypothetical protein; Provisional	88.0
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	87.16
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	86.77
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	85.73
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	85.34

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=100.00  E-value=3.9e-51  Score=371.17  Aligned_cols=231  Identities=29%  Similarity=0.517  Sum_probs=206.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhhH
Q 025539            2 GEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQ   81 (251)
Q Consensus         2 ~~~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~   81 (251)
                      .+|++|+.++++||+++++|.++||++|.|+++.+.++      ....++|++||+||.|+.++++|+++++.||+|||+
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~------~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~   76 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRA------GSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPA   76 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc------cchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhH
Confidence            36789999999999999999999999999987633221      123578999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCCCCCCCHHHHHHHhhchhHHHHHHHHHHHH
Q 025539           82 SLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIV  161 (251)
Q Consensus        82 slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~~~~~~~~~l~~~~~~~~fi~y~~~~~~~~  161 (251)
                      ++|+|++++++++|++++++++|||++++|++|++++++|+++++.++|++++.+|++|+.+++++|.|+.|+.+..++.
T Consensus        77 slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~  156 (300)
T PF05653_consen   77 SLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLI  156 (300)
T ss_pred             HHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998876655


Q ss_pred             HHHHHHHhhcchhhhccCCCchhhhhcchhhhhhhhhccchhhHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHH
Q 025539          162 AIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTA  241 (251)
Q Consensus       162 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~y~~~sg~lg~~tvl~aK~~~~ll~~~~~g~~~~~~~~~y~ll~~~~~~~  241 (251)
                      +.+++..+++.      |++       ..+.|..+||++|++|++++|++++.++++++|+|||.||.+|++++++++++
T Consensus       157 ~~L~~~~~~r~------g~~-------~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~  223 (300)
T PF05653_consen  157 LILIFFIKPRY------GRR-------NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTA  223 (300)
T ss_pred             HHHHHhhcchh------ccc-------ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHH
Confidence            54433333210      111       26889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcC
Q 025539          242 GFWVKIIKEL  251 (251)
Q Consensus       242 ~~Ql~~LNka  251 (251)
                      +.|++|||||
T Consensus       224 ~~Q~~~LN~a  233 (300)
T PF05653_consen  224 VLQLYYLNKA  233 (300)
T ss_pred             HHHHHHHHHH
Confidence            9999999996

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.2e-52  Score=371.52  Aligned_cols=232  Identities=22%  Similarity=0.359  Sum_probs=214.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 025539            1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAA   80 (251)
Q Consensus         1 m~~~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap   80 (251)
                      +++|++|+.+++.||++++.+.++|||+|+|.+....++.      ....+|++.|+||+|++.|++|++.||.||+|||
T Consensus        16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~------~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAP   89 (335)
T KOG2922|consen   16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAG------EGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAP   89 (335)
T ss_pred             ccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhccccc------CCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhch
Confidence            4688999999999999999999999999999887544332      2357889999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCCCCCCCHHHHHHHhhchhHHHHHHHHHHH
Q 025539           81 QSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFI  160 (251)
Q Consensus        81 ~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~~~~~~~~~l~~~~~~~~fi~y~~~~~~~  160 (251)
                      +++|+|||++|+++|+++|++++||+++..+.+||.++++|.+++|.|+|++++..|++|+++++++|+|++|..+.+.+
T Consensus        90 asLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~  169 (335)
T KOG2922|consen   90 ASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILI  169 (335)
T ss_pred             HhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHhhcchhhhccCCCchhhhhcchhhhhhhhhccchhhHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHH
Q 025539          161 VAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFST  240 (251)
Q Consensus       161 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~y~~~sg~lg~~tvl~aK~~~~ll~~~~~g~~~~~~~~~y~ll~~~~~~  240 (251)
                      ++++++.++.++      ||+|       .++|..+|+++|++||+++|+++++++++++|+||+.+|++|+++++++.|
T Consensus       170 ~~il~~~~~p~~------g~tn-------ilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~  236 (335)
T KOG2922|consen  170 VLILIFFYAPRY------GQTN-------ILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATC  236 (335)
T ss_pred             HHHHheeecccc------cccc-------eeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence            877665555432      2344       899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcC
Q 025539          241 AGFWVKIIKEL  251 (251)
Q Consensus       241 ~~~Ql~~LNka  251 (251)
                      +.+|++|||||
T Consensus       237 ~~~Q~~yLNkA  247 (335)
T KOG2922|consen  237 VSTQMNYLNKA  247 (335)
T ss_pred             HHHHHHHHHHH
Confidence            99999999997

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.19  E-value=1.7e-10  Score=92.85  Aligned_cols=116  Identities=16%  Similarity=0.100  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchh--hHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 025539            7 GAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYH--SWRVGILVFLLGNCLNFISFGYAAQSLL   84 (251)
Q Consensus         7 Gi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~w~~G~~~~~~g~~~~~~Al~~ap~slv   84 (251)
                      |..+.+.+.++.+.||.+.|++..+.++.+. +.    ..-.......+|  .-+.|+.+++++.++|..++...|+++.
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~-~~----~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~A   77 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSH-AW----DFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRA   77 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCCccc-hh----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            6678899999999999999999876532110 00    000011234567  7789999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHH--HhccccchhhhhHHHHHHhhhhhhee
Q 025539           85 AALGSVQFVSNIAFSYF--VFNKMVTVKVLVATAFIVLGNIFLVS  127 (251)
Q Consensus        85 ~Pl~~~~lv~~~~~a~~--~l~E~~~~~~~~g~~li~~G~~l~v~  127 (251)
                      .|+-+...+...+.+..  ++||+++..+++|+.++++|+.++..
T Consensus        78 yp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         78 YPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            99999998888888885  79999999999999999999998764

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.96  E-value=1.3e-08  Score=79.77  Aligned_cols=102  Identities=17%  Similarity=0.104  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHH--HHHHHHHHHHHHHHhhhhHHHHHhh
Q 025539           10 INLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI--LVFLLGNCLNFISFGYAAQSLLAAL   87 (251)
Q Consensus        10 lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~--~~~~~g~~~~~~Al~~ap~slv~Pl   87 (251)
                      .-+++.++-+.|+.+.|++..+..     +     +.     ...++..+.+.  ..++++..++..++...|+++.+|+
T Consensus         5 ~l~~ai~~ev~g~~~lK~s~~~~~-----~-----~~-----~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~   69 (111)
T PRK15051          5 TLVFASLLSVAGQLCQKQATRPVA-----I-----GK-----RRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPM   69 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCC-----c-----ch-----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHH
Confidence            456677888889999998733210     0     00     01123345555  6678899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539           88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (251)
Q Consensus        88 ~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v  126 (251)
                      -+++++++.+++.+++|||++.++++|..++++|++++.
T Consensus        70 ~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         70 LSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998774

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.60  E-value=5.5e-07  Score=70.24  Aligned_cols=68  Identities=25%  Similarity=0.400  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheecc
Q 025539           61 GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG  129 (251)
Q Consensus        61 G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~  129 (251)
                      |......+..+.+.|+.++| ..++|+.+++.+++.+++..++|||++++++.|++++.+|++++....
T Consensus        41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            44444578888999999999 599999999999999999999999999999999999999999886533

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.59  E-value=1.5e-07  Score=75.17  Aligned_cols=117  Identities=17%  Similarity=0.228  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhccc-c-cCCC----------CCCCCCccccccchhhHH----HHHHHHHHHHHHH
Q 025539            9 FINLVGSIAINFGTNLLKLGHIEREKHS-T-LDSD----------GTNGKHSLKPIVHYHSWR----VGILVFLLGNCLN   72 (251)
Q Consensus         9 ~lal~~s~~~a~G~~lqk~~~~~~~~~~-~-~~~~----------~~~~~~~~~~~~~~p~w~----~G~~~~~~g~~~~   72 (251)
                      +.++.++++-+++..+-|.+.......- + .++-          -..++.+...-...+.|.    .| ...+++-++-
T Consensus         6 ~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSG-la~glswl~Y   84 (140)
T COG2510           6 IYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSG-LAGGLSWLLY   84 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHH-HHHHHHHHHH
Confidence            6889999999999999998754221100 0 0000          000000111112223342    33 3456777777


Q ss_pred             HHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539           73 FISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (251)
Q Consensus        73 ~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v  126 (251)
                      |.|+.-+++|.|+|+..+|.++.+++|..++|||++..+++|+.++++|++++.
T Consensus        85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            899999999999999999999999999999999999999999999999998764

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=98.44  E-value=3e-07  Score=72.29  Aligned_cols=79  Identities=20%  Similarity=0.319  Sum_probs=71.7

Q ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhh-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539           48 SLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALG-SVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (251)
Q Consensus        48 ~~~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~-~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v  126 (251)
                      +.+..++||+.++++.+.-.|++..+..++-+|+|+..|+. +++++++++.++++.+|..++++++|+.+++.|+.+++
T Consensus        34 ~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv  113 (113)
T PF10639_consen   34 EIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALCV  113 (113)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence            34568999999999999999999999999999999999995 99999999999777777778888999999999998753

Many members are annotated as potential transmembrane proteins.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.32  E-value=1.3e-05  Score=63.87  Aligned_cols=73  Identities=14%  Similarity=0.178  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHhh-hhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccC
Q 025539           58 WRVGILVFLLGNCLNFISFGYAAQSLLAAL-GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGN  130 (251)
Q Consensus        58 w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl-~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~  130 (251)
                      |+..+.+++++..+...|+...|+++.+|+ .+++.+...+.+.+++||+++..+++|..++++|++.+-..++
T Consensus        33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~  106 (120)
T PRK10452         33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR  106 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence            566677788888888999999999999999 5799999999999999999999999999999999988755444

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=98.08  E-value=8.8e-05  Score=58.14  Aligned_cols=98  Identities=15%  Similarity=0.134  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhH-HHHHHHHHHHHHHHHHHHhhhhHHHHHhh-h
Q 025539           11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSW-RVGILVFLLGNCLNFISFGYAAQSLLAAL-G   88 (251)
Q Consensus        11 al~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w-~~G~~~~~~g~~~~~~Al~~ap~slv~Pl-~   88 (251)
                      -+++.++=..|....|++..                      +++|.| +..+..|+++..+...|+...|.++.+|. .
T Consensus         7 L~~a~~~Ev~~~~~lK~s~g----------------------f~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~   64 (110)
T PRK09541          7 LGGAILAEVIGTTLMKFSEG----------------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWS   64 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhcC----------------------CCchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHH
Confidence            34456666667777765421                      123444 34555677777777889999999999999 5


Q ss_pred             hhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccC
Q 025539           89 SVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGN  130 (251)
Q Consensus        89 ~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~  130 (251)
                      +++.+...+.+.+++||+++..+++|..++++|++.+-..++
T Consensus        65 GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~  106 (110)
T PRK09541         65 GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR  106 (110)
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            699999999999999999999999999999999998855443

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.05  E-value=8.1e-05  Score=66.06  Aligned_cols=70  Identities=17%  Similarity=0.368  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCC
Q 025539           63 LVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ  132 (251)
Q Consensus        63 ~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~  132 (251)
                      .+|.+.+.+.+.++...+.+.-+=+...-++++++++.+++|+|+++++|++..+.++|++++-..+..+
T Consensus        25 ~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   25 LLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            6799999999999999999999999999999999999999999999999999999999998876544443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.03  E-value=7.5e-05  Score=67.44  Aligned_cols=128  Identities=13%  Similarity=0.057  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCC---------CCCCCCccccccchh----hHHHHHHHHHHHHHH
Q 025539            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD---------GTNGKHSLKPIVHYH----SWRVGILVFLLGNCL   71 (251)
Q Consensus         5 ~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~p----~w~~G~~~~~~g~~~   71 (251)
                      .+|.++++.++++.+.+..+.|+...+.+.... .-.         +..............    .++.|+...+++..+
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l  225 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGAEHGPATV-AIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL  225 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHH-HHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999998865322111000 000         000000000011111    245667667788888


Q ss_pred             HHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCCC
Q 025539           72 NFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQS  133 (251)
Q Consensus        72 ~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~~  133 (251)
                      ++.++...|.+.++++..+.-+++.+++.+++||+++..+++|..+++.|+.......++++
T Consensus       226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~  287 (293)
T PRK10532        226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREP  287 (293)
T ss_pred             HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            89999999999999999999999999999999999999999999999999988866555533

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.95  E-value=7.5e-05  Score=57.29  Aligned_cols=69  Identities=16%  Similarity=0.325  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539           58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (251)
Q Consensus        58 w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v  126 (251)
                      ...|....+++..+.+.++...|.+.++++..++-+++.+++..++||+++++++.|..+++.|+.++.
T Consensus        57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   57 LFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            345554457889999999999999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.92  E-value=0.00016  Score=64.81  Aligned_cols=118  Identities=8%  Similarity=-0.055  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCC---------CC---CCCCccccccchhhH---HHHHHHHHHHHHHH
Q 025539            8 AFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD---------GT---NGKHSLKPIVHYHSW---RVGILVFLLGNCLN   72 (251)
Q Consensus         8 i~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~p~w---~~G~~~~~~g~~~~   72 (251)
                      ..+.+.++++.|..+.+.|+...++..  ..+-.         +.   .......+..++..|   ..+.........+.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL   80 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999854333211  00000         00   000001111112222   12233344566666


Q ss_pred             HHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539           73 FISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (251)
Q Consensus        73 ~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~  127 (251)
                      +.++...|.+..+|+...+-++..+++.+++|||++++++.|..++..|+.++..
T Consensus        81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            7899999999999999999999999999999999999999999999999987753

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.80  E-value=0.00022  Score=53.98  Aligned_cols=86  Identities=15%  Similarity=0.069  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHH-HHHHHHHHHHHHHhhhhHHHHHhhh-
Q 025539           11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGIL-VFLLGNCLNFISFGYAAQSLLAALG-   88 (251)
Q Consensus        11 al~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~-~~~~g~~~~~~Al~~ap~slv~Pl~-   88 (251)
                      -+.+.++-..|+...|.++..                      +++.|..+.. .++++..+...|+...|.++..|+= 
T Consensus         6 L~~a~~~ev~~~~~lK~s~g~----------------------~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~   63 (93)
T PF00893_consen    6 LLLAILFEVVGTIALKASHGF----------------------TQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWT   63 (93)
T ss_dssp             HHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhh----------------------cchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            345556677788888753321                      2344444443 5778888888899999999999975 


Q ss_pred             hhHHHHHHHHHHHHhccccchhhhhHHHHH
Q 025539           89 SVQFVSNIAFSYFVFNKMVTVKVLVATAFI  118 (251)
Q Consensus        89 ~~~lv~~~~~a~~~l~E~~~~~~~~g~~li  118 (251)
                      +++.+...+.+.+++||+++..++.|..++
T Consensus        64 g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   64 GLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            599999999999999999999999998875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.71  E-value=0.00056  Score=59.82  Aligned_cols=119  Identities=14%  Similarity=0.119  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc-C-CC---------CCCCCCccccccchhhH----HHHHHHHHHH
Q 025539            4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTL-D-SD---------GTNGKHSLKPIVHYHSW----RVGILVFLLG   68 (251)
Q Consensus         4 ~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~-~-~~---------~~~~~~~~~~~~~~p~w----~~G~~~~~~g   68 (251)
                      ...|..++++++++.+....++|+...+.+..... . -.         +........+....+.|    ..|....+++
T Consensus       126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (260)
T TIGR00950       126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA  205 (260)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence            35699999999999999999999875332100000 0 00         00000000001122233    2444445678


Q ss_pred             HHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhh
Q 025539           69 NCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGN  122 (251)
Q Consensus        69 ~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~  122 (251)
                      ..+++.++...|.+.++.+..+.-+++.+++.+++||+++..++.|+.+++.|+
T Consensus       206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            888999999999999999999999999999999999999999999999999886

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.69  E-value=0.00035  Score=64.82  Aligned_cols=80  Identities=11%  Similarity=0.233  Sum_probs=67.3

Q ss_pred             ccccchhhHHHHH--HHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539           50 KPIVHYHSWRVGI--LVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (251)
Q Consensus        50 ~~~~~~p~w~~G~--~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~  127 (251)
                      .+..++|.|.-=+  ++.+.|+.+...||.+-+.+-++=|...+++++++++.+++|||.++.+++|+++++.|+++++.
T Consensus        72 ~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~  151 (334)
T PF06027_consen   72 LKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVV  151 (334)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheee
Confidence            3445666654322  24567888888999999999999999999999999999999999999999999999999988765


Q ss_pred             cc
Q 025539          128 FG  129 (251)
Q Consensus       128 ~~  129 (251)
                      ..
T Consensus       152 sD  153 (334)
T PF06027_consen  152 SD  153 (334)
T ss_pred             ec
Confidence            43

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.68  E-value=0.0013  Score=51.45  Aligned_cols=95  Identities=12%  Similarity=0.083  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHHH-HHHHHHHHHHHHhhhhHHHHHhh
Q 025539            9 FINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILV-FLLGNCLNFISFGYAAQSLLAAL   87 (251)
Q Consensus         9 ~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~~-~~~g~~~~~~Al~~ap~slv~Pl   87 (251)
                      ..-+++.++=..|....|+++.                      +++|.|...+.. ++++..+-..|+...|.++.+|.
T Consensus        10 ~~L~~Ai~~Ev~~t~~Lk~s~g----------------------f~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAv   67 (109)
T PRK10650         10 AWLALAIVLEIVANIFLKFSDG----------------------FRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYAL   67 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC----------------------CcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence            3445566666677777764421                      234555444433 44555555678999999999998


Q ss_pred             hh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhh
Q 025539           88 GS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (251)
Q Consensus        88 ~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~  125 (251)
                      =+ ++.+...+.+.+++||+++..++.|..+++.|++.+
T Consensus        68 W~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         68 WGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            76 889999999999999999999999999999999865

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.62  E-value=0.00068  Score=63.45  Aligned_cols=122  Identities=12%  Similarity=0.100  Sum_probs=83.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccC-CC-------------CCCCCCcccccc--chhhHHHHHH----
Q 025539            4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-SD-------------GTNGKHSLKPIV--HYHSWRVGIL----   63 (251)
Q Consensus         4 ~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~-~~-------------~~~~~~~~~~~~--~~p~w~~G~~----   63 (251)
                      +.+|..+++.++++-+++..+||+-..+-.....-. -.             -.++ .+.....  .++ +...++    
T Consensus       187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~-~~~~i~y~~i  264 (358)
T PLN00411        187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEK-NNPSVWIIHFDI-TLITIVTMAI  264 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHcc-CCcccceeccch-HHHHHHHHHH
Confidence            577999999999999999999987543321100000 00             0000 0000000  011 111221    


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539           64 VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (251)
Q Consensus        64 ~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~  127 (251)
                      ...+++.+|..+....+.+.++...-+.=+++++++..+++|+++..+++|.++++.|+.+...
T Consensus       265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW  328 (358)
T ss_pred             HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            1234677778899999999999999999999999999999999999999999999999988754

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.57  E-value=0.00079  Score=60.85  Aligned_cols=125  Identities=10%  Similarity=0.008  Sum_probs=87.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCC---C---------CCC-CCccccccchhhH----HHHHH
Q 025539            1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD---G---------TNG-KHSLKPIVHYHSW----RVGIL   63 (251)
Q Consensus         1 m~~~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~---~---------~~~-~~~~~~~~~~p~w----~~G~~   63 (251)
                      |+....|..+.++++++.+....+-|... +-+..+..--+   +         .++ ....++..+++++    ..|..
T Consensus         3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (296)
T PRK15430          3 AKQTRQGVLLALAAYFIWGIAPAYFKLIY-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV   81 (296)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence            56667899999999999988888887531 10000000000   0         000 0000111122222    24555


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539           64 VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (251)
Q Consensus        64 ~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v  126 (251)
                      .+++...+.+.++...|.+...-+..+.=++.++++.+++|||++++++.|.++..+|+.++.
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            566788888999999999999999999999999999999999999999999999999998875

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.51  E-value=0.00088  Score=60.36  Aligned_cols=122  Identities=11%  Similarity=0.103  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc-cC---C-C------CCCCCCccccccchhhHH----HHHHHHHHHH
Q 025539            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHST-LD---S-D------GTNGKHSLKPIVHYHSWR----VGILVFLLGN   69 (251)
Q Consensus         5 ~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~-~~---~-~------~~~~~~~~~~~~~~p~w~----~G~~~~~~g~   69 (251)
                      ..|..+++.++++.|.+...+|+...+...... -.   . .      ...+. ..........|+    .|....+++.
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~i~~s~~~~  227 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGE-RLTALPTLSGFLALGYLAVFGSIIAI  227 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCC-cccccCCHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999875422110000 00   0 0      00000 000000112232    3444455778


Q ss_pred             HHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539           70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (251)
Q Consensus        70 ~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~  127 (251)
                      .++..++...|.+.+..+..+.-+++++++.+++||+++..+++|..+++.|+.+...
T Consensus       228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999999999999999999999999999999999987744

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.49  E-value=0.00098  Score=58.27  Aligned_cols=69  Identities=19%  Similarity=0.105  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539           59 RVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (251)
Q Consensus        59 ~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~  127 (251)
                      ..|.....+...+.+.|+.+.|.+..+++..+.=+++.+++..++|||++++++.|..+.++|+.++..
T Consensus        51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            455555677888888999999999999999999999999999999999999999999999999988764

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.48  E-value=0.0017  Score=58.79  Aligned_cols=73  Identities=26%  Similarity=0.381  Sum_probs=65.5

Q ss_pred             hhHHHHHHH---HHHHHHHHHHHHhhhhHHHHHhhhh-hHHHHHHHHHHHHhccccchhh----hhHHHHHHhhhhhhee
Q 025539           56 HSWRVGILV---FLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKV----LVATAFIVLGNIFLVS  127 (251)
Q Consensus        56 p~w~~G~~~---~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~----~~g~~li~~G~~l~v~  127 (251)
                      ..|..|+..   .+.|++..+.|.....+++-.|+.. ++++++.+.+.+++||+.++++    +.|.+++++|+.++..
T Consensus        57 ~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~  136 (290)
T TIGR00776        57 SIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSR  136 (290)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEe
Confidence            455557766   8899999999999999999999999 8999999999999999999999    9999999999887755


Q ss_pred             c
Q 025539          128 F  128 (251)
Q Consensus       128 ~  128 (251)
                      .
T Consensus       137 ~  137 (290)
T TIGR00776       137 S  137 (290)
T ss_pred             c
Confidence            4

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.45  E-value=0.0017  Score=58.63  Aligned_cols=119  Identities=8%  Similarity=0.029  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCC-C--------CCCCCCccccccchhhH----HHHHHHHHHHHHH
Q 025539            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDS-D--------GTNGKHSLKPIVHYHSW----RVGILVFLLGNCL   71 (251)
Q Consensus         5 ~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~p~w----~~G~~~~~~g~~~   71 (251)
                      ..|..+++.++++.+.+.++.|+-..+.+.....-- .        ..++. ... ......|    ..| ...++++.+
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-~~~~~~~~~l~~~~-~~t~~~~~l  231 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQ-PAM-VFSLPAIIKLLLAA-AAMGFGYAA  231 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcC-ccc-cCCHHHHHHHHHHH-HHHHHHHHH
Confidence            458999999999999999999874322110000000 0        00000 000 0111122    223 234567888


Q ss_pred             HHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539           72 NFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (251)
Q Consensus        72 ~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v  126 (251)
                      +..++...|.+.++++..+.-+++++++..++||+++..+++|.++++.|+.+..
T Consensus       232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence            8899999999999999999999999999999999999999999999999997764

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.44  E-value=0.003  Score=49.15  Aligned_cols=71  Identities=15%  Similarity=0.123  Sum_probs=58.9

Q ss_pred             hhhHHHHHH-HHHHHHHHHHHHHhhhhHHHHHhhhh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhh
Q 025539           55 YHSWRVGIL-VFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (251)
Q Consensus        55 ~p~w~~G~~-~~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~  125 (251)
                      |+.|.+.+. .++++..+-..|+...|.++.+++=+ ++.+..++.+..++||+++..+++|..++++|++.+
T Consensus        29 ~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          29 RLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence            345555443 35566666667999999999999855 899999999999999999999999999999999876

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.33  E-value=0.0048  Score=47.96  Aligned_cols=71  Identities=14%  Similarity=0.046  Sum_probs=59.6

Q ss_pred             hhhHHHHH-HHHHHHHHHHHHHHhhhhHHHHHhhhh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhh
Q 025539           55 YHSWRVGI-LVFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (251)
Q Consensus        55 ~p~w~~G~-~~~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~  125 (251)
                      ++.|.... ..++++..+-..|+...|.++.+++=+ ++.+...+.+.+++||+++..+++|..+++.|++.+
T Consensus        28 ~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         28 RLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            34444433 445666666677999999999999877 999999999999999999999999999999999876

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.29  E-value=0.018  Score=52.16  Aligned_cols=78  Identities=12%  Similarity=0.202  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCCCC
Q 025539           56 HSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSP  134 (251)
Q Consensus        56 p~w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~~~  134 (251)
                      +.+..+. ++.++..++..|+.+.|...-.=+.+...++.++++.+++|+|.++++++++.++++|++++.....++++
T Consensus        66 ~~~~~~~-~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~  143 (303)
T PF08449_consen   66 KYAILSF-LFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS  143 (303)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence            3444554 67788899999999999999999999999999999999999999999999999999999998876655443

; GO: 0055085 transmembrane transport

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.24  E-value=0.00041  Score=62.12  Aligned_cols=64  Identities=17%  Similarity=0.201  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhh
Q 025539           61 GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF  124 (251)
Q Consensus        61 G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l  124 (251)
                      +....++++.+++.++...|++.++++..++-+++.+++.+++||+++..+++|.+++++|+.+
T Consensus       217 ~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       217 GGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            3344557888888999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.22  E-value=0.0047  Score=55.84  Aligned_cols=121  Identities=12%  Similarity=0.112  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccC-C--------CC-------CCCCCccccc--cchhh-HH----HHH
Q 025539            6 IGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-S--------DG-------TNGKHSLKPI--VHYHS-WR----VGI   62 (251)
Q Consensus         6 iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~-~--------~~-------~~~~~~~~~~--~~~p~-w~----~G~   62 (251)
                      .|..+++.++++.+.+..++|+...+.+...... .        -+       .++.+.....  -.++. |+    .|+
T Consensus       143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i  222 (299)
T PRK11453        143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH
Confidence            6999999999999999999997532211100000 0        00       0000000000  01122 22    344


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539           63 LVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (251)
Q Consensus        63 ~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v  126 (251)
                      +..++++.+++.++...+...++++..+.=+++.+++.+++||+++..+++|..++++|+.+..
T Consensus       223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence            4455677777778888889999999999999999999999999999999999999999998664

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.12  E-value=0.0053  Score=55.48  Aligned_cols=58  Identities=19%  Similarity=0.330  Sum_probs=49.0

Q ss_pred             HHHHHHHhh-hhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539           70 CLNFISFGY-AAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (251)
Q Consensus        70 ~~~~~Al~~-ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~  127 (251)
                      .+.+.++.. .|.+..+-+..+.-++..+++++++|||++++++.|.++..+|+.++..
T Consensus        74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence            344566666 4777777788888899999999999999999999999999999987763

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=97.10  E-value=0.0049  Score=55.59  Aligned_cols=66  Identities=17%  Similarity=0.218  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhh
Q 025539           59 RVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (251)
Q Consensus        59 ~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~  125 (251)
                      ..|+. +.+...++..++.+.+.+..+-+.+++-++.++++.+++|||++++++.|..+.++|+.+.
T Consensus        70 ~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        70 PVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             HHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence            45554 5677888889999999999999999999999999999999999999999999999999764

specificities overlap.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.04  E-value=0.0099  Score=51.92  Aligned_cols=73  Identities=11%  Similarity=0.217  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHH-HHhccccchhhhhHHHHHHhhhhhheeccCCC
Q 025539           60 VGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ  132 (251)
Q Consensus        60 ~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~-~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~  132 (251)
                      .|......+..+.+.++...|.+..+++.+.+-++..+++. +++|||++++++.|..+...|+.++...+..+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~  148 (292)
T COG0697          75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG  148 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence            44445567778888999999999999999999999999997 66799999999999999999998887655543

>TIGR00688 rarD rarD protein

Probab=97.01  E-value=0.012  Score=51.66  Aligned_cols=63  Identities=10%  Similarity=0.020  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539           65 FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (251)
Q Consensus        65 ~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~  127 (251)
                      ++.+..+.+.|+...|.+..+-+..++=++.++++++++|||++++++.|..+..+|+.++..
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            556778888999999999999999999999999999999999999999999999999987653

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.82  E-value=0.005  Score=53.80  Aligned_cols=123  Identities=16%  Similarity=0.117  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccC-----CC-----CCCCCCccccc-cchhhH--HHHHHHHHHHHHH
Q 025539            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-----SD-----GTNGKHSLKPI-VHYHSW--RVGILVFLLGNCL   71 (251)
Q Consensus         5 ~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~-~~~p~w--~~G~~~~~~g~~~   71 (251)
                      ..|+.+++.+++..+.....+|+-. +.......-     ..     .....+...+. .+....  ..|+...+++..+
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  231 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL  231 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999998543 111000000     00     00000000011 111111  2344444467888


Q ss_pred             HHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheec
Q 025539           72 NFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF  128 (251)
Q Consensus        72 ~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~  128 (251)
                      ++.++...|.+.++|+..+..+++.+++..+++|+++..++.|+++++.|+.+....
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            889999999999999999999999999999999999999999999999999877543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.80  E-value=0.0047  Score=55.77  Aligned_cols=64  Identities=11%  Similarity=-0.042  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheecc
Q 025539           66 LLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG  129 (251)
Q Consensus        66 ~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~  129 (251)
                      .++..+++.++...|.+.++++.-+.-+++.+++.++++|+++...+.|.++++.|+.++...+
T Consensus       224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3678888899999999999999999999999999999999999999999999999988776433

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=96.71  E-value=0.013  Score=54.50  Aligned_cols=70  Identities=17%  Similarity=0.171  Sum_probs=59.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539           56 HSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (251)
Q Consensus        56 p~w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v  126 (251)
                      +....|+. ...+......++.+.+.+..+=+.+++=++.++++++++|||++++.+.+.+++++|+.+..
T Consensus       116 ~llp~gl~-~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        116 NFLPQGLC-HLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            34445552 23345566689999999999999999999999999999999999999999999999999875

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.49  E-value=0.053  Score=48.90  Aligned_cols=79  Identities=20%  Similarity=0.283  Sum_probs=65.5

Q ss_pred             hhHHHHHHH---HHHHHHHHHHHHhhhhHHHHHhhh-hhHHHHHHHHHHHHhccccchhhh----hHHHHHHhhhhhhee
Q 025539           56 HSWRVGILV---FLLGNCLNFISFGYAAQSLLAALG-SVQFVSNIAFSYFVFNKMVTVKVL----VATAFIVLGNIFLVS  127 (251)
Q Consensus        56 p~w~~G~~~---~~~g~~~~~~Al~~ap~slv~Pl~-~~~lv~~~~~a~~~l~E~~~~~~~----~g~~li~~G~~l~v~  127 (251)
                      ..|+.+++.   -.+|++.++.++.....|.-.|+. +..++.|.+++.++++|--+..++    .+.+++++|+.+...
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            467777644   468999999999999999999999 589999999999999998877764    478889999988777


Q ss_pred             ccCCCCC
Q 025539          128 FGNHQSP  134 (251)
Q Consensus       128 ~~~~~~~  134 (251)
                      ..+++++
T Consensus       123 ~~~~~~~  129 (269)
T PF06800_consen  123 QDKKSDK  129 (269)
T ss_pred             ccccccc
Confidence            6655543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK11689 aromatic amino acid exporter; Provisional

Probab=96.39  E-value=0.039  Score=49.74  Aligned_cols=67  Identities=13%  Similarity=0.166  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHhh----hhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539           61 GILVFLLGNCLNFISFGY----AAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (251)
Q Consensus        61 G~~~~~~g~~~~~~Al~~----ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~  127 (251)
                      |...+.....+.+.++.+    .|.+..+-+..+.=++..+++..++|||++++++.|+.+..+|+.++..
T Consensus        67 ~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~  137 (295)
T PRK11689         67 GGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG  137 (295)
T ss_pred             HhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence            333343444445555544    3555666677788899999999999999999999999999999988764

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.38  E-value=0.006  Score=54.94  Aligned_cols=69  Identities=17%  Similarity=0.243  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe----eccCCCCCC
Q 025539           67 LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV----SFGNHQSPV  135 (251)
Q Consensus        67 ~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v----~~~~~~~~~  135 (251)
                      .|-.+.+.||.+.|++=-.=+.-.+=++..++|..+||||.+..|.+|+.....|+++++    .||.++++.
T Consensus       109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~  181 (346)
T KOG4510|consen  109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGE  181 (346)
T ss_pred             hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccc
Confidence            556667788888888766556666778999999999999999999999999999999997    577665543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=96.12  E-value=0.018  Score=52.11  Aligned_cols=116  Identities=16%  Similarity=0.170  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCC---CC------C---CCCC-ccccccchhhHH----HHHHHHHH
Q 025539            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDS---DG------T---NGKH-SLKPIVHYHSWR----VGILVFLL   67 (251)
Q Consensus         5 ~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~---~~------~---~~~~-~~~~~~~~p~w~----~G~~~~~~   67 (251)
                      ..|+..++++++..+.-...-|..+.+     ..+.   ..      .   .... ..++. .++.+|    .|.. .++
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gi~-~~i  223 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAFGVD-----GLSVLLPQAIGMVIGGIIFNLGHILAKPL-KKYAILLNILPGLM-WGI  223 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCCC-----cceehhHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHH-HHH
Confidence            458888888888888887777744211     0000   00      0   0000 00111 222333    4444 467


Q ss_pred             HHHHHHHHHh-hhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhh----hHHHHHHhhhhhhee
Q 025539           68 GNCLNFISFG-YAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVL----VATAFIVLGNIFLVS  127 (251)
Q Consensus        68 g~~~~~~Al~-~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~----~g~~li~~G~~l~v~  127 (251)
                      ++.+.+.+.. ..+.+.-.++.....+.+.+.+.+++||+.+++++    +|.++++.|+.++..
T Consensus       224 a~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       224 GNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            7777778888 99999999999999999999999999999999999    999999999987753

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=96.12  E-value=0.23  Score=44.69  Aligned_cols=66  Identities=17%  Similarity=0.235  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHH-hhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539           60 VGILVFLLGNCLNFISF-GYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (251)
Q Consensus        60 ~G~~~~~~g~~~~~~Al-~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v  126 (251)
                      .|......+..+.+.+. ...|.+..+-+..+.=++..+++.+ +|||++++++.|..+..+|+.++.
T Consensus        74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~  140 (292)
T PRK11272         74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN  140 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence            44444445556666677 8888888888889999999999975 799999999999999999988764

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=96.01  E-value=0.052  Score=50.97  Aligned_cols=83  Identities=14%  Similarity=0.151  Sum_probs=69.8

Q ss_pred             HHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCC-----CCCCCHHHHHHHhhch
Q 025539           74 ISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ-----SPVYTPEQLAEKYSNI  148 (251)
Q Consensus        74 ~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~-----~~~~~~~~l~~~~~~~  148 (251)
                      .||++-.++-..=+.+.|=+|...+|..+.+||++..+.+++.+.+.|++++...+.+.     +.+....++..+++.-
T Consensus       178 aALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~llaL~sA~  257 (416)
T KOG2765|consen  178 AALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLLALLSAL  257 (416)
T ss_pred             HHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999998887765432     2334567888888887


Q ss_pred             hHHHHHHH
Q 025539          149 TFLVYCLI  156 (251)
Q Consensus       149 ~fi~y~~~  156 (251)
                      .+-+|.+.
T Consensus       258 ~YavY~vl  265 (416)
T KOG2765|consen  258 LYAVYTVL  265 (416)
T ss_pred             HHHHHHHH
Confidence            78888764

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=95.93  E-value=0.067  Score=49.72  Aligned_cols=68  Identities=13%  Similarity=0.274  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539           60 VGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (251)
Q Consensus        60 ~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~  127 (251)
                      +=..+|.+-+-+.++++...|.+.-+....+-++.++++...+|+||+++++|...++..+|+.++=.
T Consensus        97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~  164 (345)
T KOG2234|consen   97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL  164 (345)
T ss_pred             HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence            33468999888999999999999999999999999999999999999999999999999999998763

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=95.87  E-value=0.097  Score=41.90  Aligned_cols=116  Identities=16%  Similarity=0.212  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhh----hccccc---------------------CCCCCCCCCccccc----cc-h-
Q 025539            7 GAFINLVGSIAINFGTNLLKLGHIER----EKHSTL---------------------DSDGTNGKHSLKPI----VH-Y-   55 (251)
Q Consensus         7 Gi~lal~~s~~~a~G~~lqk~~~~~~----~~~~~~---------------------~~~~~~~~~~~~~~----~~-~-   55 (251)
                      |..+++.|+++.++=.+++|+-..++    ++.+..                     |+....  ......    .+ . 
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~--~~~~~~~~~~~~~~~   78 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLS--SFFSEIFGEELSSDP   78 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hHHHHhhhhhhcchH
Confidence            67889999999999999999887764    111100                     110000  000001    11 2 


Q ss_pred             -hhHHHHHH--HHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhh
Q 025539           56 -HSWRVGIL--VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF  124 (251)
Q Consensus        56 -p~w~~G~~--~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l  124 (251)
                       ..++....  +..+-+...+..+...+....+=++.+--+...+++..+++|+++..++.|..+.+.|+.+
T Consensus        79 ~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   79 NFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence             22222111  1224455556677788888888888899999999999999999999999999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=95.36  E-value=0.15  Score=46.45  Aligned_cols=69  Identities=19%  Similarity=0.287  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheec
Q 025539           60 VGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF  128 (251)
Q Consensus        60 ~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~  128 (251)
                      .=..+...|+.+.++.+-+-.++--|-+..--++|.-+++..+||++++.++|+|...+.+|.+.+...
T Consensus        91 ~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   91 PPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             ChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            345688899999999999999999999999999999999999999999999999999999999888765

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=94.95  E-value=0.1  Score=48.82  Aligned_cols=59  Identities=14%  Similarity=0.330  Sum_probs=53.2

Q ss_pred             HHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHH------hccccchhhhhHHHHHHhhhhhhee
Q 025539           69 NCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFV------FNKMVTVKVLVATAFIVLGNIFLVS  127 (251)
Q Consensus        69 ~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~------l~E~~~~~~~~g~~li~~G~~l~v~  127 (251)
                      +.+.+.++.+.|.+..+=+..+.=++.++++.++      +|||+++++++|.++..+|+.++..
T Consensus        92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~  156 (358)
T PLN00411         92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF  156 (358)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            3355779999999999999999999999999999      6999999999999999999987764

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=94.62  E-value=0.27  Score=45.78  Aligned_cols=127  Identities=13%  Similarity=0.120  Sum_probs=80.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccC----------C---CCCCCCCccccccchhhHHHHHHHHHHHH
Q 025539            3 EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD----------S---DGTNGKHSLKPIVHYHSWRVGILVFLLGN   69 (251)
Q Consensus         3 ~~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~p~w~~G~~~~~~g~   69 (251)
                      +..+|-++++.|+++.|+..++|++-..+....+..-          .   --.+ .++..+.-  ..|-.+. +++...
T Consensus       165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile-~~~i~~~~--w~~~~~~-~~v~~~  240 (334)
T PF06027_consen  165 NPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILE-RSGIESIH--WTSQVIG-LLVGYA  240 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhee-hhhhhccC--CChhhHH-HHHHHH
Confidence            3468999999999999999999998765543221100          0   0000 00111111  1122222 333344


Q ss_pred             HHHHHHHhhhhHHHH------Hhhhh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCCC
Q 025539           70 CLNFISFGYAAQSLL------AALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQS  133 (251)
Q Consensus        70 ~~~~~Al~~ap~slv------~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~~  133 (251)
                      ++.+.-|...|..+-      .-++- ++-++++++..++.|++++..-++|-+++++|.++.....++++
T Consensus       241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~  311 (334)
T PF06027_consen  241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEE  311 (334)
T ss_pred             HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccc
Confidence            455667777776542      22222 46888999999999999999999999999999987766555443

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=94.41  E-value=0.063  Score=48.35  Aligned_cols=58  Identities=14%  Similarity=0.213  Sum_probs=50.7

Q ss_pred             HHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539           70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (251)
Q Consensus        70 ~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~  127 (251)
                      ..++.++...+.+..+-.+.+-=++.++++.+++||+++..+++|.++++.|+.+.-.
T Consensus       236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            4555678888888888888888899999999999999999999999999999987653

specificities overlap.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=94.24  E-value=0.11  Score=46.84  Aligned_cols=66  Identities=21%  Similarity=0.309  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhh----hHHHHHHhhhhh
Q 025539           58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVL----VATAFIVLGNIF  124 (251)
Q Consensus        58 w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~----~g~~li~~G~~l  124 (251)
                      ...|+ ++.+|++..+.+-...-+..-.|+..++++.+.+-+-+++||+=+++|+    .|.+++++|.++
T Consensus       199 il~G~-~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  199 ILTGL-IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hHHHH-HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            34555 7889999999999999999999999999999999999999999998874    577777777653

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=93.69  E-value=0.068  Score=41.61  Aligned_cols=78  Identities=18%  Similarity=0.269  Sum_probs=64.6

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539           49 LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (251)
Q Consensus        49 ~~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v  126 (251)
                      .+.++.+...|+-+.+---|+.+-+.-++-+|.++-.|... +++.|..+++..+-.|.-.++-++|+.++++|+.+++
T Consensus        46 ~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   46 MKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             HHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            55667777788888888889999999999999999999865 7899999999874444445667999999999998764

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.62  E-value=1.3  Score=34.14  Aligned_cols=106  Identities=18%  Similarity=0.284  Sum_probs=62.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHHHHHHHHHHH---HHHHh
Q 025539            1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLN---FISFG   77 (251)
Q Consensus         1 m~~~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~~~~~g~~~~---~~Al~   77 (251)
                      |+.+.--+++-+.|++++.+.    -++|.+....             +.-..---.|=+.+.=|.+.--.|   -..|+
T Consensus         5 ~~~~l~~vlLL~~SNvFMTFA----WYghLk~~~~-------------pl~~~i~~SWGIA~fEY~LqvPaNRiG~~v~s   67 (116)
T COG3169           5 MSVYLYPVLLLIGSNVFMTFA----WYGHLKFTNK-------------PLVIVILASWGIAFFEYLLQVPANRIGHQVYS   67 (116)
T ss_pred             CchHHHHHHHHHhhHHHHHHH----HHHHHhccCC-------------chhHHHHHHhhHHHHHHHHhCccchhhhhhcc
Confidence            667777888999999988665    5788774210             000111123333333232211111   12333


Q ss_pred             hhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhh
Q 025539           78 YAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (251)
Q Consensus        78 ~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~  125 (251)
                      -+-+-..|-  .+++..=+++|.+++||+++...+.|..++..|+.++
T Consensus        68 ~~QLK~mQE--VItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi  113 (116)
T COG3169          68 AAQLKTMQE--VITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI  113 (116)
T ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence            333333332  3567777899999999999999888888887776554

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=93.56  E-value=1.2  Score=40.51  Aligned_cols=83  Identities=17%  Similarity=0.179  Sum_probs=60.8

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHHhhhhHH---HHHhhhh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhh
Q 025539           49 LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQS---LLAALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF  124 (251)
Q Consensus        49 ~~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~s---lv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l  124 (251)
                      .++..++|+=+....+.++--..|..-+-.||-.   +=+.+|= +.=++|++++..++|||+++.+++.+.+-.+|+..
T Consensus        62 ~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~  141 (293)
T COG2962          62 LKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLI  141 (293)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            4456778877777766666666777767676654   3333433 23357899999999999999999999999999987


Q ss_pred             heeccCC
Q 025539          125 LVSFGNH  131 (251)
Q Consensus       125 ~v~~~~~  131 (251)
                      ......+
T Consensus       142 ~~~~~g~  148 (293)
T COG2962         142 QTWLLGS  148 (293)
T ss_pred             HHHHcCC
Confidence            7654443

>TIGR00803 nst UDP-galactose transporter

Probab=93.53  E-value=0.34  Score=41.69  Aligned_cols=118  Identities=13%  Similarity=0.037  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc-----------------CCCCCCCCCcccc---ccchhhHHHHHH
Q 025539            4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTL-----------------DSDGTNGKHSLKP---IVHYHSWRVGIL   63 (251)
Q Consensus         4 ~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~p~w~~G~~   63 (251)
                      ...|+...+.+.++.++..+.|++...+++.....                 ..++.+. ....+   -+....|..+ .
T Consensus        83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~  160 (222)
T TIGR00803        83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTL-ISNFGFFIGYPTAVWIVG-L  160 (222)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccch-hhccCcccCCchHHHHHH-H
Confidence            34577777777778888999998875443211000                 0000000 00111   1122233333 3


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhh
Q 025539           64 VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNI  123 (251)
Q Consensus        64 ~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~  123 (251)
                      +...+.++-...+.+++.....=...+..+++.+++.++++|+++...+.|+.++..|+.
T Consensus       161 ~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~  220 (222)
T TIGR00803       161 LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF  220 (222)
T ss_pred             HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence            455666666678888888899999999999999999999999999999999999998864

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=91.90  E-value=0.83  Score=42.74  Aligned_cols=129  Identities=9%  Similarity=0.066  Sum_probs=86.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc-CCC--------C----CCCCCccccccc---hhhHHHHH---H
Q 025539            3 EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTL-DSD--------G----TNGKHSLKPIVH---YHSWRVGI---L   63 (251)
Q Consensus         3 ~~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~-~~~--------~----~~~~~~~~~~~~---~p~w~~G~---~   63 (251)
                      +..+|++..+++.++.+.=.+-|||.  ++-+-|.- |..        +    .-......++++   ...|..++   .
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~~--k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~   81 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKKV--KKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA   81 (345)
T ss_pred             hhHHHHHHHHHHHHHhhccccccccc--CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence            45679999999999988888888862  22110000 000        0    000001222222   23455554   3


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhhh-hHHHHHHHHHHHHhcccc---c----hhhhhHHHHHHhhhhhheeccCCCC
Q 025539           64 VFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMV---T----VKVLVATAFIVLGNIFLVSFGNHQS  133 (251)
Q Consensus        64 ~~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~---~----~~~~~g~~li~~G~~l~v~~~~~~~  133 (251)
                      +-.+|++.++.++.+.-.|+-.|+.- ++++.+.++.+.+++|=-   +    .....|++++++|+++....+...|
T Consensus        82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~  159 (345)
T PRK13499         82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE  159 (345)
T ss_pred             HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            45689999999999999999999987 889999999999998632   2    3358899999999999988554433

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=91.90  E-value=5.7  Score=35.64  Aligned_cols=116  Identities=18%  Similarity=0.097  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCC---CC---CC-CCccccccchh----hHHHHHHHHHHHHHHHH
Q 025539            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD---GT---NG-KHSLKPIVHYH----SWRVGILVFLLGNCLNF   73 (251)
Q Consensus         5 ~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~---~~---~~-~~~~~~~~~~p----~w~~G~~~~~~g~~~~~   73 (251)
                      ..|+.+.+++.++.+.+..+.|.+...-+-....-.|   +.   -. .+..+.-.+++    .++.|. +++..+.+.+
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~   89 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGV-SLGGMNYLFY   89 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHH-HHHHHHHHHH
Confidence            4588999999999999999998765421110000000   00   00 00000011222    225555 3566677778


Q ss_pred             HHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539           74 ISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (251)
Q Consensus        74 ~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~  127 (251)
                      .++...|.+...-+..+.=++..+++    +|+.  .+..+..+..+|+.++..
T Consensus        90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~--~~~~~~~i~~~Gv~li~~  137 (293)
T PRK10532         90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRP--VDFVWVVLAVLGLWFLLP  137 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHh----cCCh--HHHHHHHHHHHHHheeee
Confidence            89999999987766666666665555    2544  345677777888877653

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=90.33  E-value=1.2  Score=40.12  Aligned_cols=125  Identities=14%  Similarity=0.056  Sum_probs=81.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCC-----------CCCCCCCccccccchhh-HHHHHHHHHH----
Q 025539            4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDS-----------DGTNGKHSLKPIVHYHS-WRVGILVFLL----   67 (251)
Q Consensus         4 ~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~p~-w~~G~~~~~~----   67 (251)
                      ...|+.+++.+..+-+.=...-|+.-.  ..+....-           -|. +..+..+.+.+|. -..++...++    
T Consensus       146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~--~~~g~~g~a~gm~vAaviv~Pi-g~~~ag~~l~~p~ll~laLgvavlSSal  222 (292)
T COG5006         146 DPVGVALALGAGACWALYIVLGQRAGR--AEHGTAGVAVGMLVAALIVLPI-GAAQAGPALFSPSLLPLALGVAVLSSAL  222 (292)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHcchhcc--cCCCchHHHHHHHHHHHHHhhh-hhhhcchhhcChHHHHHHHHHHHHhccc
Confidence            467888888888886655555432211  00100000           000 0011233344443 3344444443    


Q ss_pred             HHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCC
Q 025539           68 GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH  131 (251)
Q Consensus        68 g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~  131 (251)
                      =+.+..+|+...|...-.-|-++.=.+..+.+..+|||+++..+|+|+.+++.++.-.....++
T Consensus       223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~  286 (292)
T COG5006         223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK  286 (292)
T ss_pred             chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence            4566778999999999999999999999999999999999999999999999998866554443

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=89.85  E-value=1.9  Score=33.45  Aligned_cols=48  Identities=21%  Similarity=0.283  Sum_probs=40.0

Q ss_pred             HHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCC
Q 025539           83 LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH  131 (251)
Q Consensus        83 lv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~  131 (251)
                      +-+.-|.+=++.+++-....-|.+.++.|+.|...|.+|+.++ .++|.
T Consensus        60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vi-l~~pR  107 (109)
T COG1742          60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVI-LFGPR  107 (109)
T ss_pred             HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeee-EeCCC
Confidence            5567788888889999999999999999999999999996544 55554

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=88.86  E-value=0.88  Score=41.41  Aligned_cols=78  Identities=14%  Similarity=0.325  Sum_probs=59.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhHH-HHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCCC
Q 025539           56 HSWRVGILVFLLGNCLNFISFGYAAQS-LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQS  133 (251)
Q Consensus        56 p~w~~G~~~~~~g~~~~~~Al~~ap~s-lv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~~  133 (251)
                      +.|..=..++-.-+++|=.|+.|.-.. +=-=+.+-+++.|++++..++|+|-+.+++..+..+.+|+++...++.++.
T Consensus        65 k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~  143 (330)
T KOG1583|consen   65 KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDG  143 (330)
T ss_pred             hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcch
Confidence            445555555556677787788875222 122256779999999999999999999999999999999998887776643

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=88.06  E-value=2.9  Score=37.75  Aligned_cols=124  Identities=12%  Similarity=0.069  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccC-----------------C-CCCCCCCccccccchhhHHHHHHHH
Q 025539            4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-----------------S-DGTNGKHSLKPIVHYHSWRVGILVF   65 (251)
Q Consensus         4 ~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~-----------------~-~~~~~~~~~~~~~~~p~w~~G~~~~   65 (251)
                      +..|+++.+++-++.++-.+.|++-..+.+.+..+.                 . ...+..+..+-..+.|..+.-+.+.
T Consensus       152 ~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~  231 (303)
T PF08449_consen  152 SALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLF  231 (303)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHH
Confidence            445999999999999999999997765543322110                 0 0000000111122334433333332


Q ss_pred             -HHHHHHHHH---HHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539           66 -LLGNCLNFI---SFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (251)
Q Consensus        66 -~~g~~~~~~---Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~  127 (251)
                       ..+.+++..   -...-.....+=...+--+.+.+++..+.+++++...|.|..++..|..+-..
T Consensus       232 s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  232 SLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY  297 (303)
T ss_pred             HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence             233444422   22222233334444455677888899999999999999999999999876544

; GO: 0055085 transmembrane transport

>PRK02237 hypothetical protein; Provisional

Probab=88.00  E-value=3.5  Score=32.19  Aligned_cols=48  Identities=15%  Similarity=0.228  Sum_probs=39.9

Q ss_pred             HHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCC
Q 025539           83 LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH  131 (251)
Q Consensus        83 lv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~  131 (251)
                      +-+.=|.+=++.+++-....-|++.++.|++|..++.+|+.++. ++|.
T Consensus        61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~-~~pR  108 (109)
T PRK02237         61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM-YAPR  108 (109)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe-ecCC
Confidence            45556777788888999999999999999999999999998764 4553

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=87.16  E-value=2.5  Score=39.30  Aligned_cols=52  Identities=23%  Similarity=0.288  Sum_probs=41.9

Q ss_pred             HHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhh
Q 025539           74 ISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (251)
Q Consensus        74 ~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~  125 (251)
                      ..+...+....+=.+.+-=++..+++..+++|+++..+++|.++++.|+.+.
T Consensus       295 ~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY  346 (350)
T PTZ00343        295 YCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY  346 (350)
T ss_pred             HHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence            3555555555555566667888999999999999999999999999999764

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=86.77  E-value=2.4  Score=33.04  Aligned_cols=47  Identities=19%  Similarity=0.309  Sum_probs=39.5

Q ss_pred             HHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccC
Q 025539           83 LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGN  130 (251)
Q Consensus        83 lv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~  130 (251)
                      +-+.=|.+=++.+.+-...+-|++.++.|++|..+|.+|+.++. ++|
T Consensus        59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~-~~P  105 (107)
T PF02694_consen   59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL-FAP  105 (107)
T ss_pred             HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE-ecC
Confidence            44566777788899999999999999999999999999998664 444

; GO: 0016020 membrane

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=85.73  E-value=6.2  Score=30.70  Aligned_cols=94  Identities=19%  Similarity=0.332  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHHHHH---HHHHHHHHH--Hhhh--h
Q 025539            8 AFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFL---LGNCLNFIS--FGYA--A   80 (251)
Q Consensus         8 i~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~~~~---~g~~~~~~A--l~~a--p   80 (251)
                      +.+-++|++++.+.    =++|.|..+                   .+|.|.+=+..-+   ..+.++.=|  +++.  .
T Consensus         4 i~LL~~SN~FMTfA----WYGHLK~~~-------------------~~pl~~ail~SWgIAffEY~l~VPANRiG~~~~s   60 (108)
T PF04342_consen    4 ILLLILSNIFMTFA----WYGHLKFKS-------------------SKPLWIAILISWGIAFFEYCLQVPANRIGYQTFS   60 (108)
T ss_pred             hHHHHHHHHHHHHH----HHHHhhccc-------------------cCcHHHHHHHHHHHHHHHHHHhCcchhhhccccC
Confidence            56778888888765    478887521                   1266654433322   233333221  1111  1


Q ss_pred             HHHHHhhhh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhh
Q 025539           81 QSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF  124 (251)
Q Consensus        81 ~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l  124 (251)
                      +.=+.-++. +++..=++++.+++||+++.....|-++++.++..
T Consensus        61 ~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f  105 (108)
T PF04342_consen   61 LAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF  105 (108)
T ss_pred             HHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence            112222332 45666678889999999999999998888766543

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=85.34  E-value=15  Score=29.68  Aligned_cols=66  Identities=17%  Similarity=0.216  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhh-HHHHHHHHHHH----HhccccchhhhhHHHHHHhhhhh
Q 025539           59 RVGILVFLLGNCLNFISFGYAAQSLLAALGSV-QFVSNIAFSYF----VFNKMVTVKVLVATAFIVLGNIF  124 (251)
Q Consensus        59 ~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~-~lv~~~~~a~~----~l~E~~~~~~~~g~~li~~G~~l  124 (251)
                      |.|-.+-++--.++.........+...-+... .++.++++-++    .-+++++.++.+|.+++++|+.+
T Consensus        68 ~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   68 YLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            45544433333333344444334433333333 36677777775    45789999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	99.04
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.93

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=99.04  E-value=2.1e-09  Score=82.94  Aligned_cols=100  Identities=15%  Similarity=0.154  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhh-
Q 025539            9 FINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAAL-   87 (251)
Q Consensus         9 ~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl-   87 (251)
                      .+.+++.++-+.|+...|++..               .      .+.+.+..+...++++..+...|+...|++.++|+ 
T Consensus         5 l~l~~a~~~e~~~~~~lK~s~~---------------~------~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~   63 (110)
T 3b5d_A            5 IYLGGAILAEVIGTTLMKFSEG---------------F------TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIW   63 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhccC---------------c------chHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHH
Confidence            4567788999999999997521               0      01244567788889999999999999999999999 


Q ss_pred             hhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheecc
Q 025539           88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG  129 (251)
Q Consensus        88 ~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~  129 (251)
                      .+++.++..+++.+++||+++..+++|..+++.|+.++...+
T Consensus        64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            899999999999999999999999999999999999886543

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.93  E-value=2.5e-09  Score=85.84  Aligned_cols=100  Identities=15%  Similarity=0.152  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhh-
Q 025539            9 FINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAAL-   87 (251)
Q Consensus         9 ~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl-   87 (251)
                      ++.+++.++-+.|+.+.|++...                     .+.+.++.|.++++++..++..++...|++.++|+ 
T Consensus         5 l~Ll~ail~ev~~~~~lK~s~g~---------------------~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw   63 (137)
T 2i68_A            5 IYLGGAILAEVIGTTLMKFSEGF---------------------TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIW   63 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc---------------------chHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence            34567888999999999976210                     01244578888999999999999999999999999 


Q ss_pred             hhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheecc
Q 025539           88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG  129 (251)
Q Consensus        88 ~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~  129 (251)
                      .+++.++.++++.+++||+++..+++|++++++|+.++...+
T Consensus        64 ~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            899999999999999999999999999999999999886544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00