Citrus Sinensis ID: 025545

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKRVEVATAA
Secondary Structure (PSIPRED)
ccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHHHccccEEEcccccccccccccccEEEEEEEccEEEEEccccEEEEEEccccccccEEEEcEEEEEEccccEEEccccccccEEEEEEEEcccccEEEEEEcccccccccccccccccEEEEEEEEEcccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEcccccccccccccccEEEEEEEcccEEEEEcccEEEEEEEcccccccEEEEEEEEEEEccccEEEcccEEcccEEEEEEEEcccccEEEEEEEccccccHHccccccccEEEEEEEEEcccccccHcccc
Coil and Loop (DISEMBL)
MAHRRCLHVLSRHAAALlslktpptlpfstsislkgltpfqhrslisstlgptnwshyrhfssnknddegedvdedededeetadesyegeeigdtvpdlgreytlEEKEAEAAEIGYkvlgplrksdrvfkkyEPAFAVVQIGShqfkvsngdsifTERLKFCEVNDKLILNKVLLLgsqhqtiigrpmvpdaAVHAVVEEHALDAKVIIFKKKRrknyrrtkghrqeLTKLRIVDIQGIEKRVEVATAA
Flexible Loop (DISEMBL)
MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRHfssnknddegedvdEDEDEDeetadesyegeeigdtvpdlGREYTLEEKEAEaaeigykvlgpLRKSDRVFKKYEPAFAVVqigshqfkvsnGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEhaldakviifkkkrrknyrrtkghrqeltklrivdiqgiekrvevataa
Low Complexity Region (SEG)
MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRHFSSNKNddegedvdedededeetadesyegeeIGDTVPDLGREYTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDaavhavveehaLDAKVIIFkkkrrknyrrtkGHRQELTKLRIVDIQGIEKRVEVATAA
Disordered region (IsUnstruct)
*****CLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHY******************************************************AAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRT**HRQELTKLRIVDIQGIE*********
Disordered Region (DISOPRED)
*********LSRHAAALLSLKTPPTLPFSTS************SLISSTLG*********************************************************************************KYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG***********
Disordered Region (DISEMBL)
MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRHFSS****************************EIGDTVPDLGREYTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKRVEVATAA
Disordered Region (DISPRO)
****RCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRHFS*****************************************YTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYR*TKGHRQELTKLRIVDIQGI**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKRVEVATAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q8L9A0	270	50S ribosomal protein L21	yes	no	0.944	0.877	0.579	1e-57
P24613	256	50S ribosomal protein L21	N/A	no	0.418	0.410	0.590	2e-23
B6IR01	103	50S ribosomal protein L21	yes	no	0.402	0.980	0.490	4e-19
P51412	220	50S ribosomal protein L21	no	no	0.541	0.618	0.433	4e-19
Q2VZU4	100	50S ribosomal protein L21	yes	no	0.382	0.96	0.475	7e-18
Q54IF0	172	Probable 39S ribosomal pr	yes	no	0.442	0.645	0.434	8e-18
Q0AKX7	223	50S ribosomal protein L21	yes	no	0.398	0.448	0.435	2e-16
Q1GZ51	104	50S ribosomal protein L21	yes	no	0.386	0.932	0.438	2e-16
B8E0B4	105	50S ribosomal protein L21	yes	no	0.398	0.952	0.475	6e-16
A9IM54	158	50S ribosomal protein L21	yes	no	0.398	0.632	0.405	7e-16

>sp|Q8L9A0|RM21_ARATH 50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 SV=1

 Score =  223 bits (567), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/252 (57%), Positives = 178/252 (70%), Gaps = 15/252 (5%)

Query: 1   MAHRRCLHVLSRHAAALLSLKTPPTLP------FS-TSISLKGLTPFQHRSLISSTLGPT 53
           MA  RC   LSR A  + S+    ++       FS TSIS   + P  +RSL  +    +
Sbjct: 1   MASLRCFRELSRRATTVFSINQTRSISSFHGIEFSGTSISHGTVIP--NRSLTRNLPWYS 58

Query: 54  NW--SHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEA 111
           +W  S  R FSSN  D + ++   + ++D+E   E +E     D   ++ REY+  EK  
Sbjct: 59  HWYRSQDRCFSSNTKDTDEDEESSEGEDDDEEEGEDFEDS--ADM--EVEREYSPAEKVE 114

Query: 112 EAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLI 171
           EA EIGYKV+GPL+ S+R+FK YEP FA+VQIGSHQFKVSNGDSIFTE+LKFC++NDKL 
Sbjct: 115 EAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLE 174

Query: 172 LNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELT 231
           L KVLLLGS  QTIIGRP++PDA VHAVVEEHALD KV+IFKKKRRKNYRRT+GHRQELT
Sbjct: 175 LTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELT 234

Query: 232 KLRIVDIQGIEK 243
           KLRI DIQGIEK
Sbjct: 235 KLRITDIQGIEK 246

This protein binds to 23S ribosomal RNA in the presence of protein L20.
Arabidopsis thaliana (taxid: 3702)

>sp|P24613|RK21_SPIOL 50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea GN=RPL21 PE=1 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 79/105 (75%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           FAVV IGS Q+ V  G  I+T+RLK   VNDK++LNKVLL+G++  T IG P+V +AAVH
Sbjct: 124 FAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVH 183

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIE 242
           AVVEE  LD KVI+FK K++KNYRR  GHRQ +T+++I  I G E
Sbjct: 184 AVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYE 228

This protein binds to 23S ribosomal RNA in the presence of protein L20.

Spinacia oleracea (taxid: 3562)

>sp|B6IR01|RL21_RHOCS 50S ribosomal protein L21 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplU PE=3 SV=1

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 66/102 (64%), Gaps = 1/102 (0%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           FAV++ G  Q+KV+NGD I  E+L   +    + L+ VL++    +T IG P+V  AAV 
Sbjct: 2   FAVIRTGGKQYKVANGDVIKVEKL-VADAGATVTLDDVLMVSDAGKTTIGTPVVQGAAVT 60

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQ 239
           A V   +   K+IIFKKKRR+NYRR  GHRQ+LT LRI  IQ
Sbjct: 61  AEVVAQSRGPKIIIFKKKRRQNYRRKNGHRQDLTVLRITGIQ 102

This protein binds to 23S rRNA in the presence of protein L20.

Rhodospirillum centenum (strain ATCC 51521 / SW) (taxid: 414684)

>sp|P51412|RK21_ARATH 50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana GN=RPL21 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 86/136 (63%)

Query: 108 EKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVN 167
           E E E  +I   V+  + +      K E  FAV+ +G  Q+ V  G  ++T+RLK   V+
Sbjct: 71  EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130

Query: 168 DKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHR 227
           D+++LNKVLL+G++  T IG+P+V +A VHAVVE   L+ KV++FK K +K YRR  GHR
Sbjct: 131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHR 190

Query: 228 QELTKLRIVDIQGIEK 243
           Q  T++RI  I G E+
Sbjct: 191 QPNTRIRITGITGYEE 206

This protein binds to 23S ribosomal RNA in the presence of protein L20.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2VZU4|RL21_MAGSA 50S ribosomal protein L21 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplU PE=3 SV=1

 Score = 90.9 bits (224), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 5/101 (4%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           FAV+Q G  Q+KV++GD I  E+L   E   +++L++VL++G +    IG P+V  A+V 
Sbjct: 2   FAVIQTGGKQYKVASGDVIRVEKLA-GEAGAEVVLDQVLMVGDK----IGVPVVAGASVK 56

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 238
           A V   A   K+I+FKK+RR+N RR  GHRQ+LT LRI DI
Sbjct: 57  ATVVAQARGEKIIVFKKRRRQNSRRKNGHRQDLTILRITDI 97

This protein binds to 23S rRNA in the presence of protein L20.

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

>sp|Q54IF0|RM21_DICDI Probable 39S ribosomal protein L21, mitochondrial OS=Dictyostelium discoideum GN=mrpl21 PE=3 SV=1

 Score = 90.9 bits (224), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 74/115 (64%), Gaps = 4/115 (3%)

Query: 137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAV 196
           +FAVV I   Q+KV  GD I T++++  +V + ++L+KVLL+G++++TIIG+P++ +  V
Sbjct: 61  SFAVVHISGKQYKVIEGDIIMTDKIQ-VDVGEHIVLDKVLLVGTKNETIIGKPIISNFKV 119

Query: 197 HAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKRVEVATAA 251
           HA +EE A    V IFK K RKNY+RT G +   T +R   I GI K  E  T  
Sbjct: 120 HAYIEEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYIR---IGGIIKGQETTTTT 171

Dictyostelium discoideum (taxid: 44689)

>sp|Q0AKX7|RL21_MARMM 50S ribosomal protein L21 OS=Maricaulis maris (strain MCS10) GN=rplU PE=3 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 1/101 (0%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           FAV++ G  Q++V+ GD I  E+L+     D L L  VL+LGS+    +G P +  A V 
Sbjct: 2   FAVIKTGGKQYRVAAGDEIRIEKLEGA-AGDTLDLGDVLMLGSEAGVTVGSPTIDGAQVI 60

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 238
             + +     K+I+FKK+RR+NYRRTKGHRQ  T +RI +I
Sbjct: 61  GELLDTNRARKIIVFKKRRRQNYRRTKGHRQWGTVVRIAEI 101

This protein binds to 23S rRNA in the presence of protein L20.

Maricaulis maris (strain MCS10) (taxid: 394221)

>sp|Q1GZ51|RL21_METFK 50S ribosomal protein L21 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rplU PE=3 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 65/98 (66%), Gaps = 1/98 (1%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           +AV++ G  Q++V+ GD +  E+L   EV  ++ L+KVLL+     T IG P+V  A+V 
Sbjct: 2   YAVIKTGGKQYRVAAGDKLKVEKLA-GEVGSEITLDKVLLVSDGDNTTIGSPLVQGASVQ 60

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 235
           A V  H    KV+IFK +RRK+YR+T+GHRQ  T+++I
Sbjct: 61  AKVVAHGRGDKVLIFKMRRRKHYRKTQGHRQSFTEIQI 98

This protein binds to 23S rRNA in the presence of protein L20.

Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) (taxid: 265072)

>sp|B8E0B4|RL21_DICTD 50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplU PE=3 SV=1

 Score = 84.7 bits (208), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           F VV+ G  Q+KVS G  +  E+LK   V D+++L+KVLL+G + + IIG+P V  A V 
Sbjct: 2   FVVVETGGKQYKVSVGSMVNVEKLK-ANVGDEVVLDKVLLVGKEDEVIIGQPYVEGAKVI 60

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 238
           A V       KVI+FK KR+K+YRR  GHRQ  T+L I +I
Sbjct: 61  AKVVRQDKYPKVIVFKFKRKKHYRRKYGHRQPYTQLSIKEI 101

This protein binds to 23S rRNA in the presence of protein L20.

Dictyoglomus turgidum (strain Z-1310 / DSM 6724) (taxid: 515635)

>sp|A9IM54|RL21_BART1 50S ribosomal protein L21 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplU PE=3 SV=1

 Score = 84.3 bits (207), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 63/101 (62%), Gaps = 1/101 (0%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           FAV++ G  Q+++     +  E++      D +  N VL++G +   +IG P+V DA V 
Sbjct: 2   FAVIKTGGKQYRIVANQVVKVEKV-IGNAGDVVEFNDVLMVGQEGSAVIGTPVVADARVT 60

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 238
           A + E A   KVI FKK+RR+N +RT+GHRQE T LR+++I
Sbjct: 61  AEILEQARGRKVIAFKKRRRQNSKRTRGHRQEFTTLRVLEI 101

This protein binds to 23S rRNA in the presence of protein L20.

Bartonella tribocorum (strain CIP 105476 / IBS 506) (taxid: 382640)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
255556067	268	50S ribosomal protein L21, mitochondrial	0.908	0.850	0.629	9e-69
313585316	271	mitochondrial 50S ribosomal protein L21	0.936	0.867	0.662	4e-64
449452985	270	PREDICTED: 50S ribosomal protein L21, mi	0.964	0.896	0.650	5e-62
449489339	270	PREDICTED: LOW QUALITY PROTEIN: 50S ribo	0.964	0.896	0.646	5e-62
307136145	279	50S ribosomal protein l21 mitochondrial	0.948	0.853	0.640	9e-62
297798872	770	hypothetical protein ARALYDRAFT_328625 [	0.960	0.312	0.568	5e-58
356548719	267	PREDICTED: 50S ribosomal protein L21, mi	0.932	0.876	0.623	1e-56
357511751	290	50S ribosomal protein L21 [Medicago trun	0.948	0.820	0.596	2e-56
357511749	300	50S ribosomal protein L21 [Medicago trun	0.948	0.793	0.596	3e-56
388506582	300	unknown [Medicago truncatula]	0.948	0.793	0.596	3e-56

>gi|255556067|ref|XP_002519068.1| 50S ribosomal protein L21, mitochondrial precursor, putative [Ricinus communis] gi|223541731|gb|EEF43279.1| 50S ribosomal protein L21, mitochondrial precursor, putative [Ricinus communis]

 Score =  266 bits (679), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 163/259 (62%), Positives = 187/259 (72%), Gaps = 31/259 (11%)

Query: 1   MAHRRCLHVLSRHAAALLSLKTPPT-------LP-FSTSISLKGLTPFQHRSLISSTLGP 52
           MA RR LH L+R   A++S  + PT       LP F +S+S+K L      SLI +    
Sbjct: 1   MAQRRRLHSLTRQVIAIIS--SNPTQLHHTVKLPSFPSSLSIKTL----RSSLIFTNTNA 54

Query: 53  TN---WSHY-----RHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREY 104
           T    WSH+     R+FSS+  D    D  ED+  D +       GEE+ ++  DL REY
Sbjct: 55  TCHSLWSHHHHRNHRYFSSDYGDKSENDETEDDGSDSD-------GEEVTES--DLKREY 105

Query: 105 TLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFC 164
           TL+EKE EAA IGYKV+GPL  S+RV K YEP FAV+QIGSHQFKVSNGD IFTERLKFC
Sbjct: 106 TLQEKEEEAAAIGYKVIGPLGDSERVIKAYEPVFAVIQIGSHQFKVSNGDCIFTERLKFC 165

Query: 165 EVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTK 224
           +VNDKLILNKVLL+GSQ QTI+GRPMVPDA VHA+VEEHALDAKVIIFKKKRRKNYRRTK
Sbjct: 166 DVNDKLILNKVLLVGSQTQTIVGRPMVPDAVVHAIVEEHALDAKVIIFKKKRRKNYRRTK 225

Query: 225 GHRQELTKLRIVDIQGIEK 243
           GHRQELTKLRI DIQGIEK
Sbjct: 226 GHRQELTKLRITDIQGIEK 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313585316|gb|ADR70863.1| mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 169/255 (66%), Positives = 185/255 (72%), Gaps = 20/255 (7%)

Query: 1   MAHRRCLHVLSRHAAALLSLKTPPTL--PFSTSISLKGLTPFQHRSLISS----TLGPTN 54
           MA RRCLH L+R A ALLS   P TL  P   + S   L   +   +  S    T   + 
Sbjct: 1   MAQRRCLHTLTRQAIALLS-SNPTTLYHPCKVAASFPNLNSVKALLICKSSHVFTKADSI 59

Query: 55  WS------HYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEE 108
           W       H R+FSS     +  D  E++DEDEETA E  +GEE+  +  DL REYT EE
Sbjct: 60  WCSFWPYHHRRYFSS-----DSRDESENDDEDEETAGEDSDGEEVKGS--DLKREYTAEE 112

Query: 109 KEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVND 168
           KE EAA IGYKV+GPL+KSD VFK YEP FAVVQIGSHQFKVSNGD IFTE+LKFCEVND
Sbjct: 113 KEEEAAAIGYKVVGPLQKSDLVFKPYEPVFAVVQIGSHQFKVSNGDCIFTEKLKFCEVND 172

Query: 169 KLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQ 228
           KLILNKVLLLGS  QTI+GRP VPDAAVHAVVEEHALDAK IIFKKKRRKNYRRTKGHRQ
Sbjct: 173 KLILNKVLLLGSSSQTIVGRPTVPDAAVHAVVEEHALDAKAIIFKKKRRKNYRRTKGHRQ 232

Query: 229 ELTKLRIVDIQGIEK 243
           ELTKLRI DIQGIEK
Sbjct: 233 ELTKLRITDIQGIEK 247

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452985|ref|XP_004144239.1| PREDICTED: 50S ribosomal protein L21, mitochondrial-like [Cucumis sativus]

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 162/249 (65%), Positives = 184/249 (73%), Gaps = 7/249 (2%)

Query: 1   MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSL---ISSTLGP---TN 54
           MA+RRCL VL+RHA+A+ S K P   P  T+ S        H SL   +S+   P   T 
Sbjct: 1   MANRRCLQVLTRHASAIFSTK-PYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTY 59

Query: 55  WSHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEAEAA 114
           W H R+ SS+  +   +D  EDEDEDE+      E + I  +   + +EYT EE EAEAA
Sbjct: 60  WPHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEMEAEAA 119

Query: 115 EIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNK 174
            IGYKVLGPL +S+ VFK YEPAFAVVQIGSHQFKVSNGDSIFTERLKFC+VNDKLILNK
Sbjct: 120 AIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK 179

Query: 175 VLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 234
           VLL+GS  QTI+GRP VP A V AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR
Sbjct: 180 VLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 239

Query: 235 IVDIQGIEK 243
           IVDIQG+EK
Sbjct: 240 IVDIQGVEK 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489339|ref|XP_004158283.1| PREDICTED: LOW QUALITY PROTEIN: 50S ribosomal protein L21, mitochondrial-like [Cucumis sativus]

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 161/249 (64%), Positives = 183/249 (73%), Gaps = 7/249 (2%)

Query: 1   MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSL---ISSTLGP---TN 54
           MA+RRCL VL+RHA+A+ S K P   P  T+ S        H SL   +S+   P   T 
Sbjct: 1   MANRRCLQVLTRHASAIFSTK-PYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTY 59

Query: 55  WSHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEAEAA 114
           W H R+ SS+  +   +D  EDEDEDE+      E + I  +   + +EYT EE EAEAA
Sbjct: 60  WPHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEMEAEAA 119

Query: 115 EIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNK 174
            IGYKVLGPL +S+ VFK YEPAFAVVQIGSHQFKVSNGDSIFTERLKFC+VNDKLILNK
Sbjct: 120 AIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK 179

Query: 175 VLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 234
           VLL+GS  QTI+GRP VP A V AVVEEHALDAKVIIFK KRRKNYRRTKGHRQELTKLR
Sbjct: 180 VLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKXKRRKNYRRTKGHRQELTKLR 239

Query: 235 IVDIQGIEK 243
           IVDIQG+EK
Sbjct: 240 IVDIQGVEK 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136145|gb|ADN33989.1| 50S ribosomal protein l21 mitochondrial precursor [Cucumis melo subsp. melo]

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 162/253 (64%), Positives = 187/253 (73%), Gaps = 15/253 (5%)

Query: 1   MAHRRCLHVLSRHAAALLS-------LKTPPTLPFSTSISLKGLTPFQHRSLISSTLGP- 52
           MA+RRCL VL+RHA+A+LS       LK  P+L F    +   L+     + +S+   P 
Sbjct: 10  MANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLS-----NCLSAKTDPS 64

Query: 53  --TNWSHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKE 110
             T WSH R+ SS+  +   +D  EDEDEDE+      E + I  +   + +EYT EE E
Sbjct: 65  LCTYWSHTRYLSSDSRNGNEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEME 124

Query: 111 AEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKL 170
           AEAA IGYKVLGPL +S+ +FK YEPAFAVVQIGSHQFKVSNGDSIFTERLKFC+VNDKL
Sbjct: 125 AEAAAIGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKL 184

Query: 171 ILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQEL 230
           ILNKVLL+GS  QTI+GRP VP A V AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQEL
Sbjct: 185 ILNKVLLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQEL 244

Query: 231 TKLRIVDIQGIEK 243
           TKLRIVDIQGIEK
Sbjct: 245 TKLRIVDIQGIEK 257

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798872|ref|XP_002867320.1| hypothetical protein ARALYDRAFT_328625 [Arabidopsis lyrata subsp. lyrata] gi|297313156|gb|EFH43579.1| hypothetical protein ARALYDRAFT_328625 [Arabidopsis lyrata subsp. lyrata]

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 142/250 (56%), Positives = 176/250 (70%), Gaps = 9/250 (3%)

Query: 1   MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGL-----TPFQHRSLISSTLGPTNW 55
           MA  RC   LSR A  + S+    ++     I L G      T   +RSL  +    + W
Sbjct: 499 MASLRCFRELSRRATTVYSIIQTRSISSFPGIELSGTSISHGTVIPNRSLSRNLTWYSLW 558

Query: 56  --SHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEAEA 113
             S  R FSSN ND   ++   + +++++  +E  + E+  +   ++ REY+  EK  EA
Sbjct: 559 YRSQDRRFSSNTNDTAEDEESSEGEDEDDDDEEGEDFEDSAEM--EVEREYSPAEKVEEA 616

Query: 114 AEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILN 173
           AEIGYKV+GPL+ S+R+FK YEP FA+VQIGSHQFKVSNGDSIFTE+LKFC++NDKL L 
Sbjct: 617 AEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELT 676

Query: 174 KVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKL 233
           KVLLLGS  QTIIGRP++PDA VHAVVEEHALD KV+IFKKKRRKNYRRT+GHRQELTKL
Sbjct: 677 KVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKL 736

Query: 234 RIVDIQGIEK 243
           RI DIQGIEK
Sbjct: 737 RITDIQGIEK 746

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548719|ref|XP_003542747.1| PREDICTED: 50S ribosomal protein L21, mitochondrial-like [Glycine max]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 157/252 (62%), Positives = 183/252 (72%), Gaps = 18/252 (7%)

Query: 1   MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLT--PFQHRSLISSTLGP-----T 53
           MA RRCL  L++        KT P L F  + SL+ LT  PF + +  S           
Sbjct: 1   MASRRCLRALTQ--------KTTPFL-FRNASSLRSLTVPPFPNANASSPVFTVRASVFA 51

Query: 54  NWSHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGRE-YTLEEKEAE 112
            W H R+FSS K DD  ++ D+ +++ ++  ++  + ++  D     G++ YT EEKEAE
Sbjct: 52  QWPHLRYFSSEKKDDHSDEDDDGDEDYDDEEEDYVDDDDDDDVPVSRGKKVYTAEEKEAE 111

Query: 113 AAEIGYKVLGPLRKS-DRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLI 171
           AA IGY+V+GPL+K  D VFK YEP FAVVQIGSHQFKVSN DSIFTERLKFCEVNDKLI
Sbjct: 112 AAAIGYRVVGPLQKDEDSVFKPYEPVFAVVQIGSHQFKVSNRDSIFTERLKFCEVNDKLI 171

Query: 172 LNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELT 231
           LNKVLLLGS  QTIIGRP+VPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELT
Sbjct: 172 LNKVLLLGSASQTIIGRPIVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELT 231

Query: 232 KLRIVDIQGIEK 243
           KLRI DIQGIEK
Sbjct: 232 KLRITDIQGIEK 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511751|ref|XP_003626164.1| 50S ribosomal protein L21 [Medicago truncatula] gi|355501179|gb|AES82382.1| 50S ribosomal protein L21 [Medicago truncatula]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 157/263 (59%), Positives = 178/263 (67%), Gaps = 25/263 (9%)

Query: 4   RRCLHVLSRHAAALLSLKTPPTLPFSTSISLKG-------LTPFQHRSLISSTLGPTNWS 56
           RRCL  L+R +   LSL   P      S +          L P    S  +S  G   W 
Sbjct: 6   RRCLQALTRQSQPTLSLFKDPLSLRLLSSAALLNHNISSPLLPIFTNSKPTSAFG--QWH 63

Query: 57  HYRHFSSNKNDDEGEDVDEDE--------------DEDEETADESYEGEEIGDTVPDLGR 102
           H R+FSS+K DD  ++    E              D+D+   +E    +E  DTV    R
Sbjct: 64  HGRYFSSSKQDDHIKEGGTHEIEDEDDDSDGDDDDDDDDYDEEEGDYEDEDDDTVAVSSR 123

Query: 103 E--YTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTER 160
           +  YT EEKEAEA  IGYKV+GPL+K+D VFK YEPAFAVVQIGSHQFKVSNGDSIFTER
Sbjct: 124 KKVYTEEEKEAEAEAIGYKVVGPLQKNDNVFKPYEPAFAVVQIGSHQFKVSNGDSIFTER 183

Query: 161 LKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNY 220
           LKFCEVNDKLILNKVLLLGS  QTI+GRP+VPD AVHAVVEEHALDAKVIIFKKKRRKNY
Sbjct: 184 LKFCEVNDKLILNKVLLLGSPSQTIVGRPIVPDGAVHAVVEEHALDAKVIIFKKKRRKNY 243

Query: 221 RRTKGHRQELTKLRIVDIQGIEK 243
           RRTKGHRQELTKLRI +I+G+EK
Sbjct: 244 RRTKGHRQELTKLRITNIEGVEK 266

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511749|ref|XP_003626163.1| 50S ribosomal protein L21 [Medicago truncatula] gi|355501178|gb|AES82381.1| 50S ribosomal protein L21 [Medicago truncatula]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 157/263 (59%), Positives = 178/263 (67%), Gaps = 25/263 (9%)

Query: 4   RRCLHVLSRHAAALLSLKTPPTLPFSTSISLKG-------LTPFQHRSLISSTLGPTNWS 56
           RRCL  L+R +   LSL   P      S +          L P    S  +S  G   W 
Sbjct: 16  RRCLQALTRQSQPTLSLFKDPLSLRLLSSAALLNHNISSPLLPIFTNSKPTSAFG--QWH 73

Query: 57  HYRHFSSNKNDDEGEDVDEDE--------------DEDEETADESYEGEEIGDTVPDLGR 102
           H R+FSS+K DD  ++    E              D+D+   +E    +E  DTV    R
Sbjct: 74  HGRYFSSSKQDDHIKEGGTHEIEDEDDDSDGDDDDDDDDYDEEEGDYEDEDDDTVAVSSR 133

Query: 103 E--YTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTER 160
           +  YT EEKEAEA  IGYKV+GPL+K+D VFK YEPAFAVVQIGSHQFKVSNGDSIFTER
Sbjct: 134 KKVYTEEEKEAEAEAIGYKVVGPLQKNDNVFKPYEPAFAVVQIGSHQFKVSNGDSIFTER 193

Query: 161 LKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNY 220
           LKFCEVNDKLILNKVLLLGS  QTI+GRP+VPD AVHAVVEEHALDAKVIIFKKKRRKNY
Sbjct: 194 LKFCEVNDKLILNKVLLLGSPSQTIVGRPIVPDGAVHAVVEEHALDAKVIIFKKKRRKNY 253

Query: 221 RRTKGHRQELTKLRIVDIQGIEK 243
           RRTKGHRQELTKLRI +I+G+EK
Sbjct: 254 RRTKGHRQELTKLRITNIEGVEK 276

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506582|gb|AFK41357.1| unknown [Medicago truncatula]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 157/263 (59%), Positives = 178/263 (67%), Gaps = 25/263 (9%)

Query: 4   RRCLHVLSRHAAALLSLKTPPTLPFSTSISLKG-------LTPFQHRSLISSTLGPTNWS 56
           RRCL  L+R +   LSL   P      S +          L P    S  +S  G   W 
Sbjct: 16  RRCLQALTRQSQPTLSLFKDPLSLRLLSSAALLNHNISSPLLPIFTNSKPTSAFG--QWH 73

Query: 57  HYRHFSSNKNDDEGEDVDEDE--------------DEDEETADESYEGEEIGDTVPDLGR 102
           H R+FSS+K DD  ++    E              D+D+   +E    +E  DTV    R
Sbjct: 74  HGRYFSSSKQDDHIKEGGTHEIGDEDDDSDGDDDDDDDDYDEEEGDYEDEDDDTVAVSSR 133

Query: 103 E--YTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTER 160
           +  YT EEKEAEA  IGYKV+GPL+K+D VFK YEPAFAVVQIGSHQFKVSNGDSIFTER
Sbjct: 134 KKVYTEEEKEAEAEAIGYKVVGPLQKNDNVFKPYEPAFAVVQIGSHQFKVSNGDSIFTER 193

Query: 161 LKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNY 220
           LKFCEVNDKLILNKVLLLGS  QTI+GRP+VPD AVHAVVEEHALDAKVIIFKKKRRKNY
Sbjct: 194 LKFCEVNDKLILNKVLLLGSPSQTIVGRPIVPDGAVHAVVEEHALDAKVIIFKKKRRKNY 253

Query: 221 RRTKGHRQELTKLRIVDIQGIEK 243
           RRTKGHRQELTKLRI +I+G+EK
Sbjct: 254 RRTKGHRQELTKLRITNIEGVEK 276

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
TAIR|locus:2126699	270	NFD1 "NUCLEAR FUSION DEFECTIVE	0.960	0.892	0.451	1.4e-46
TAIR|locus:2014711	220	RPL21C "chloroplast ribosomal	0.541	0.618	0.338	1.4e-16
DICTYBASE|DDB_G0288799	172	mrpl21 "ribosomal protein L21,	0.434	0.633	0.318	2.9e-09
TIGR_CMR|GSU_3236	102	GSU_3236 "ribosomal protein L2	0.394	0.970	0.326	5.9e-09
TIGR_CMR|BA_4676	102	BA_4676 "ribosomal protein L21	0.374	0.921	0.281	8.6e-07
TIGR_CMR|SPO_1990	193	SPO_1990 "ribosomal protein L2	0.438	0.569	0.318	1.3e-06
TIGR_CMR|CHY_0367	103	CHY_0367 "ribosomal protein L2	0.402	0.980	0.274	1.5e-06
TIGR_CMR|CBU_0385	115	CBU_0385 "ribosomal protein L2	0.442	0.965	0.25	3.4e-06
TIGR_CMR|ECH_0545	102	ECH_0545 "ribosomal protein L2	0.402	0.990	0.276	4.4e-06
TIGR_CMR|DET_1325	132	DET_1325 "ribosomal protein L2	0.398	0.757	0.277	5.7e-06

TAIR|locus:2126699 NFD1 "NUCLEAR FUSION DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 112/248 (45%), Positives = 137/248 (55%)

Query:     1 MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRH 60
             MA  RC   LSR A  + S+    ++     I   G T   H ++I +     N   Y H
Sbjct:     1 MASLRCFRELSRRATTVFSINQTRSISSFHGIEFSG-TSISHGTVIPNRSLTRNLPWYSH 59

Query:    61 FSSNKNXXXXXXXXXXXXXXXXXXXXXXXXXXIGDTVPD-----LGREYTLEEKEAEAAE 115
             +  +++                           G+   D     + REY+  EK  EA E
Sbjct:    60 WYRSQDRCFSSNTKDTDEDEESSEGEDDDEEE-GEDFEDSADMEVEREYSPAEKVEEAEE 118

Query:   116 IGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKV 175
             IGYKV+GPL+ S+R+FK YEP FA+VQIGSHQFKVSNGDSIFTE+LKFC++NDKL L KV
Sbjct:   119 IGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKV 178

Query:   176 LLLGSQHQTIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRI 235
             LLLGS  QTIIGRP++PD           LD KV+IF            GHRQELTKLRI
Sbjct:   179 LLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRI 238

Query:   236 VDIQGIEK 243
              DIQGIEK
Sbjct:   239 TDIQGIEK 246

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0000741 "karyogamy" evidence=RCA;IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0001510 "RNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2014711 RPL21C "chloroplast ribosomal protein L21" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 46/136 (33%), Positives = 72/136 (52%)

Query:   108 EKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVN 167
             E E E  +I   V+  + +      K E  FAV+ +G  Q+ V  G  ++T+RLK   V+
Sbjct:    71 EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130

Query:   168 DKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHR 227
             D+++LNKVLL+G++  T IG+P+V +           L+ KV++F            GHR
Sbjct:   131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHR 190

Query:   228 QELTKLRIVDIQGIEK 243
             Q  T++RI  I G E+
Sbjct:   191 QPNTRIRITGITGYEE 206

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

DICTYBASE|DDB_G0288799 mrpl21 "ribosomal protein L21, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 36/113 (31%), Positives = 58/113 (51%)

Query:   137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXX 196
             +FAVV I   Q+KV  GD I T++++  +V + ++L+KVLL+G++++TIIG+P++ +   
Sbjct:    61 SFAVVHISGKQYKVIEGDIIMTDKIQV-DVGEHIVLDKVLLVGTKNETIIGKPIISNFKV 119

Query:   197 XXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQGIEKRVEVAT 249
                         V IF            G +   T +RI    GI K  E  T
Sbjct:   120 HAYIEEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYIRI---GGIIKGQETTT 169

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|GSU_3236 GSU_3236 "ribosomal protein L21" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 33/101 (32%), Positives = 49/101 (48%)

Query:   138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
             +AV++ G  Q+KVS GD +  E+L+   V D + L  VL++G +    IG P+VP     
Sbjct:     2 YAVIRTGGKQYKVSEGDFLKVEKLEGA-VGDTVELKDVLMVGGE-TVAIGTPLVPSASVV 59

Query:   198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDI 238
                     D K+++F            GHRQ  T L+I  I
Sbjct:    60 GRIVDQGKDKKILVFKSKRRKNFRKMYGHRQPRTVLKIEKI 100

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|BA_4676 BA_4676 "ribosomal protein L21" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 114 (45.2 bits), Expect = 8.6e-07, P = 8.6e-07
 Identities = 27/96 (28%), Positives = 44/96 (45%)

Query:   138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
             +A+++ G  Q KV  G +I+ E+L   E  + +  +KVL +G ++  + G P+V      
Sbjct:     2 YAIIETGGKQIKVEAGQAIYIEKLDV-EAGETVTFDKVLFVGGENVKV-GSPVVEGATVT 59

Query:   198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKL 233
                       K+I+F            GHRQ  TKL
Sbjct:    60 AKVEKQGRAKKIIVFKYKAKKNNRKKQGHRQPYTKL 95

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|SPO_1990 SPO_1990 "ribosomal protein L21" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 124 (48.7 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 37/116 (31%), Positives = 55/116 (47%)

Query:   138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
             FAV++ G  Q+KV  GD +  E+L   +  +K+  N VL+LG     ++G P+V      
Sbjct:     2 FAVLKTGGKQYKVQAGDVLRVEKLA-ADAGEKVQFNDVLMLGGD-APVVGAPLVDGAAVQ 59

Query:   198 XXXXXXXLDAKVIIFXXXXXXXXXXXX-GHRQELTKLRIVDI--QGIEKR-VEVAT 249
                       K+I F             GHRQ+LT +RI +I   G +K  V+ AT
Sbjct:    60 AEVIDQIKGEKLIHFVKRRRKHSSQRTKGHRQKLTLVRITEILTSGADKTGVKAAT 115

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

TIGR_CMR|CHY_0367 CHY_0367 "ribosomal protein L21" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 112 (44.5 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 28/102 (27%), Positives = 44/102 (43%)

Query:   138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
             +A++Q G  Q+KV+ GD IF E+L   E    + +N+VL +        G P V      
Sbjct:     2 YAIIQTGGKQYKVAEGDKIFVEKLN-AEPGSIVTINEVLAVVKDGSIKAGNPYVEGAKVN 60

Query:   198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQ 239
                       K+I+F            GHRQ  T++ +  I+
Sbjct:    61 LKVVRHGKGRKIIVFKYKPKKNYRRKYGHRQPFTEVIVEKIE 102

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CBU_0385 CBU_0385 "ribosomal protein L21" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 109 (43.4 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 28/112 (25%), Positives = 51/112 (45%)

Query:   138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
             +A+++ G  Q++V+ G  +  E+L   +V   +  + VL++ +  +  IG P V D    
Sbjct:     2 YAIIKTGGKQYRVTEGQMLKVEKLAQ-DVGQSVKFDDVLMVAAGDELHIGTPSVKDAAVT 60

Query:   198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQGIEKRVEVAT 249
                      AK+ I             GHRQ+ T ++I +I   + + EV T
Sbjct:    61 AEVVDQGRQAKIEIIKFKRRKHHMKRQGHRQDFTAVKITEIALGKAKKEVKT 112

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|ECH_0545 ECH_0545 "ribosomal protein L21" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 108 (43.1 bits), Expect = 4.4e-06, P = 4.4e-06
 Identities = 29/105 (27%), Positives = 47/105 (44%)

Query:   138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
             FA+V+ G  Q+KV   D I  E+L    V +++ L+KV+ L   +  I+      +    
Sbjct:     2 FAIVETGGKQYKVKEQDVIKIEKLN-ASVGEEVTLDKVIALADVNNNIV---FTHNAIVT 57

Query:   198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQGIE 242
                     + K+I+F            GHRQ +T LR+  I  +E
Sbjct:    58 ASVLEQCRNDKIIVFKKKRRKNYRRKNGHRQYMTVLRVTKINNME 102

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|DET_1325 DET_1325 "ribosomal protein L21" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 107 (42.7 bits), Expect = 5.7e-06, P = 5.7e-06
 Identities = 28/101 (27%), Positives = 41/101 (40%)

Query:   138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
             +A+++ G  Q+KV+ G  +  +     E  D + L+KVL+L       IG P VP     
Sbjct:     7 YAIIESGGKQYKVTPGQLVEVDLFDLAE-GDSIELDKVLMLNDGETVTIGSPTVPGAKVT 65

Query:   198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDI 238
                       KV  +            GHRQ  T L I +I
Sbjct:    66 ATVAGHIKGDKVFAYRFKAKSRNHKKTGHRQLYTVLTIGEI 106

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L9A0	RM21_ARATH	No assigned EC number	0.5793	0.9442	0.8777	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pm.C_scaffold_7000852 annotation not avaliable (770 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
pfam00829	96	pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L	5e-38
PRK05573	103	PRK05573, rplU, 50S ribosomal protein L21; Validat	5e-38
COG0261	103	COG0261, RplU, Ribosomal protein L21 [Translation,	7e-33
PRK12278	221	PRK12278, PRK12278, 50S ribosomal protein L21/unkn	1e-25
TIGR00061	101	TIGR00061, L21, ribosomal protein L21	7e-25
CHL00075	108	CHL00075, rpl21, ribosomal protein L21	4e-22

>gnl|CDD|201461 pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 protein

 Score =  128 bits (323), Expect = 5e-38
 Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 1/96 (1%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           +A+++ G  Q+KV  GD IF E+L   EV DK+  +KVLL+G   +  IG+P V  A V 
Sbjct: 2   YAIIETGGKQYKVEEGDVIFVEKLD-AEVGDKIEFDKVLLVGGDGKVKIGKPYVEGAKVK 60

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKL 233
           A V EH    KVI+FK KRRKNYR+ +GHRQ  T++
Sbjct: 61  AEVLEHGRGKKVIVFKYKRRKNYRKKQGHRQPYTRV 96

Length = 96

>gnl|CDD|235510 PRK05573, rplU, 50S ribosomal protein L21; Validated

 Score =  128 bits (324), Expect = 5e-38
 Identities = 47/103 (45%), Positives = 63/103 (61%), Gaps = 1/103 (0%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           +A+++ G  Q+KV  GD I  E+L   EV D +  ++VLL+G   +  IG P V  A V 
Sbjct: 2   YAIIKTGGKQYKVEEGDVIKVEKLD-AEVGDTVEFDEVLLVGGGEEVKIGAPYVEGAKVT 60

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 240
           A V EH    KVI+FK KRRKNYR+ +GHRQ  TK++I  I  
Sbjct: 61  AEVVEHGRGKKVIVFKYKRRKNYRKKQGHRQPYTKVKITSINA 103

Length = 103

>gnl|CDD|223339 COG0261, RplU, Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]

 Score =  115 bits (289), Expect = 7e-33
 Identities = 46/103 (44%), Positives = 63/103 (61%), Gaps = 1/103 (0%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           +A+++ G  Q+KV  GD I  E+L   E  DK+  ++VL++G   +  IG P V  A V 
Sbjct: 2   YAIIKTGGKQYKVEEGDVIKVEKLDA-EPGDKVEFDEVLMVGGGEEVKIGAPYVEGAKVT 60

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 240
           A V EH    KVIIFK KRRKNYR+ +GHRQ  T+++I  I  
Sbjct: 61  AEVVEHGRGKKVIIFKYKRRKNYRKKQGHRQPYTRVKITGIVA 103

Length = 103

>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion protein; Provisional

 Score =   99 bits (249), Expect = 1e-25
 Identities = 46/101 (45%), Positives = 61/101 (60%), Gaps = 1/101 (0%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           FAV++ G  Q+KV  GD +  E+L   E  + +   +VL+LG      +G P V  AAV 
Sbjct: 2   FAVIKTGGKQYKVQAGDLLRVEKLA-AEAGETVQFGEVLMLGEGDNVTVGAPFVDGAAVQ 60

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 238
           A V E     KVI FKK+RR++ RRTKGHRQ LT +RI +I
Sbjct: 61  AEVIEQIKGDKVIHFKKRRRQSSRRTKGHRQLLTLVRITEI 101

Length = 221

>gnl|CDD|129171 TIGR00061, L21, ribosomal protein L21

 Score = 94.4 bits (235), Expect = 7e-25
 Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 1/102 (0%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           +A+V+IG  Q+KV  G ++  E+L      D +  +KVL++       IG+P V  A V 
Sbjct: 1   YAIVEIGGKQYKVEEGQTVRIEKLD-AAPGDTVEFDKVLMVNKGGDVKIGKPYVEGAKVV 59

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQ 239
           A VE+H    KV ++K +RRK+ R+ +GHRQ  TK+++  I 
Sbjct: 60  AEVEKHGRGKKVKVYKYRRRKHSRKKQGHRQPYTKVKVTKIV 101

Eubacterial and chloroplast [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 101

>gnl|CDD|177014 CHL00075, rpl21, ribosomal protein L21

 Score = 87.2 bits (217), Expect = 4e-22
 Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           +A+++ G  Q  V  G           E   K++LN+VLL+ ++ + +IG+P + +A V 
Sbjct: 4   YAIIEAGGKQLWVEPGRFYDINHFPL-EPGTKILLNRVLLIRNESEILIGKPWLENATVK 62

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEK 243
             +  H    K+ ++K + +K  R+ +GHRQ+LT+  I  I    K
Sbjct: 63  GRILHHFRGKKITVYKMRPKKKTRKKQGHRQKLTRFLIDSISFNGK 108

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
CHL00075	108	rpl21 ribosomal protein L21	100.0
PRK05573	103	rplU 50S ribosomal protein L21; Validated	100.0
COG0261	103	RplU Ribosomal protein L21 [Translation, ribosomal	100.0
TIGR00061	101	L21 ribosomal protein L21. Eubacterial and chlorop	100.0
PRK12278	221	50S ribosomal protein L21/unknown domain fusion pr	100.0
PF00829	96	Ribosomal_L21p: Ribosomal prokaryotic L21 protein;	100.0
KOG1686	151	consensus Mitochondrial/chloroplast ribosomal L21	99.97
PF09026	101	CENP-B_dimeris: Centromere protein B dimerisation	93.29
KOG1686	151	consensus Mitochondrial/chloroplast ribosomal L21	83.33
KOG3130	514	consensus Uncharacterized conserved protein [Funct	81.27

>CHL00075 rpl21 ribosomal protein L21

Probab=100.00  E-value=1.5e-41  Score=273.62  Aligned_cols=104  Identities=29%  Similarity=0.505  Sum_probs=101.7

Q ss_pred             CeEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEEEEEec
Q 025545          136 PAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKK  215 (251)
Q Consensus       136 ~mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KViVfK~K  215 (251)
                      .|||||++|||||||++||+|.|++|+ +++|+.|+|++|||+++++.+.+|+|||++|+|+|+|++|+|++||++||||
T Consensus         2 ~myAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~i~l~~VL~~~~~~~~~iG~P~v~~a~V~a~V~~h~r~~Ki~vfK~k   80 (108)
T CHL00075          2 MTYAIIEAGGKQLWVEPGRFYDINHFP-LEPGTKILLNRVLLIRNESEILIGKPWLENATVKGRILHHFRGKKITVYKMR   80 (108)
T ss_pred             cEEEEEEECCEEEEEeCCCEEEEEEcC-CCCCCEEEEEEEEEEecCCCeEECCcEecCcEEEEEEEeecCCCCEEEEEeC
Confidence            699999999999999999999999997 7999999999999999888999999999999999999999999999999999


Q ss_pred             CCCCceeccCccCcceEEEEceEec
Q 025545          216 RRKNYRRTKGHRQELTKLRIVDIQG  240 (251)
Q Consensus       216 RRK~yrRk~GHRQ~yTrLRI~eI~~  240 (251)
                      |||+|||++||||+||+|+|++|..
T Consensus        81 rRK~yrrk~GHRQ~~T~i~I~~I~~  105 (108)
T CHL00075         81 PKKKTRKKQGHRQKLTRFLIDSISF  105 (108)
T ss_pred             CCCCccCCCccCCCcEEEEEEEEEc
Confidence            9999999999999999999999976

>PRK05573 rplU 50S ribosomal protein L21; Validated

Probab=100.00  E-value=2.7e-41  Score=269.48  Aligned_cols=103  Identities=46%  Similarity=0.738  Sum_probs=100.7

Q ss_pred             eEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEEEEEecC
Q 025545          137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  216 (251)
Q Consensus       137 mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KViVfK~KR  216 (251)
                      |||||++||+||||++||+|.||+|+ +++|++|.|++|||+++++++.+|+|+|++|+|+|+|++|++++|+++|||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~v~~l~-~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~A~V~~~~k~~Ki~vfK~kr   79 (103)
T PRK05573          1 MYAIIKTGGKQYKVEEGDVIKVEKLD-AEVGDTVEFDEVLLVGGGEEVKIGAPYVEGAKVTAEVVEHGRGKKVIVFKYKR   79 (103)
T ss_pred             CEEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEeEEEEEeCCCCEEECCeEcCCCEEEEEEEeccCCCcEEEEEEcC
Confidence            89999999999999999999999997 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCccCcceEEEEceEec
Q 025545          217 RKNYRRTKGHRQELTKLRIVDIQG  240 (251)
Q Consensus       217 RK~yrRk~GHRQ~yTrLRI~eI~~  240 (251)
                      ||+|+|++||||+||+|+|++|.+
T Consensus        80 RK~y~r~~GHRQ~~T~i~I~~I~~  103 (103)
T PRK05573         80 RKNYRKKQGHRQPYTKVKITSINA  103 (103)
T ss_pred             CCCccccCCccCCcEEEEEEEEeC
Confidence            999999999999999999999963

>COG0261 RplU Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-40  Score=265.65  Aligned_cols=103  Identities=45%  Similarity=0.720  Sum_probs=100.8

Q ss_pred             eEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEEEEEecC
Q 025545          137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  216 (251)
Q Consensus       137 mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KViVfK~KR  216 (251)
                      |||||++|||||+|++||+|.||+|. .++|++|+|++|||+++++.+.||.||+++|+|.|+|++|.|++||++|||||
T Consensus         1 mYAii~tGGKQykV~~G~~i~vEkl~-~e~g~~v~f~~VL~v~~~~~v~iG~P~v~ga~V~aeV~~hgr~kKV~i~K~k~   79 (103)
T COG0261           1 MYAIIKTGGKQYKVEEGDVIKVEKLD-AEPGDKVEFDEVLMVGGGEEVKIGAPYVEGAKVTAEVVEHGRGKKVIIFKYKR   79 (103)
T ss_pred             CeEEEEECCEEEEEecCCEEEEEEcC-CCCCCEEEEEEEEEEcCCCceEECCceecCcEEEEEEhhhCCCceEEEEEecc
Confidence            89999999999999999999999998 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCccCcceEEEEceEec
Q 025545          217 RKNYRRTKGHRQELTKLRIVDIQG  240 (251)
Q Consensus       217 RK~yrRk~GHRQ~yTrLRI~eI~~  240 (251)
                      ||+|+|++||||+||+|+|++|..
T Consensus        80 rK~~~rk~GHRQ~yT~vkI~~I~~  103 (103)
T COG0261          80 RKNYRKKQGHRQPYTRVKITGIVA  103 (103)
T ss_pred             CcCcccccCcccceEEEEEEEeeC
Confidence            999999999999999999999963

>TIGR00061 L21 ribosomal protein L21

Probab=100.00  E-value=2.7e-40  Score=263.42  Aligned_cols=101  Identities=38%  Similarity=0.641  Sum_probs=99.0

Q ss_pred             EEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEEEEEecCC
Q 025545          138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRR  217 (251)
Q Consensus       138 YAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KViVfK~KRR  217 (251)
                      ||||++|||||||++||+|.|++|+ .++|+.|.|++|||+++++++.+|+|+|++|+|+|+|++|++++|+++||||||
T Consensus         1 yAIi~~gGkQykV~~Gd~i~Ve~l~-~~~G~~i~l~~VLlv~~~~~~~iG~P~l~~a~V~a~V~~~~r~~Ki~vfK~krr   79 (101)
T TIGR00061         1 YAIVEIGGKQYKVEEGQTVRIEKLD-AAPGDTVEFDKVLMVNKGGDVKIGKPYVEGAKVVAEVEKHGRGKKVKVYKYRRR   79 (101)
T ss_pred             CEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEEEEEEEecCCCeEECCeEcCCCEEEEEEEeecCCCCEEEEEeCCC
Confidence            8999999999999999999999997 799999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeccCccCcceEEEEceEe
Q 025545          218 KNYRRTKGHRQELTKLRIVDIQ  239 (251)
Q Consensus       218 K~yrRk~GHRQ~yTrLRI~eI~  239 (251)
                      |+|+|++||||+||+|+|++|.
T Consensus        80 K~y~r~~GHRQ~~T~i~I~~I~  101 (101)
T TIGR00061        80 KHSRKKQGHRQPYTKVKVTKIV  101 (101)
T ss_pred             CCccCCCccCCCcEEEEEEEeC
Confidence            9999999999999999999984

Eubacterial and chloroplast.

>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional

Probab=100.00  E-value=9.3e-39  Score=284.16  Aligned_cols=104  Identities=44%  Similarity=0.663  Sum_probs=101.6

Q ss_pred             eEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEEEEEecC
Q 025545          137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  216 (251)
Q Consensus       137 mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KViVfK~KR  216 (251)
                      |||||++|||||||++||+|.|++|. .++|++|.|++|||+++++++.||+|||++++|+|+|++|+|++||++|||||
T Consensus         1 MyAVI~~gGKQykV~~Gd~i~Vekl~-~~~G~~i~~~~VL~v~~~~~~~iG~P~v~~a~V~A~V~~~~kg~Ki~vfK~kr   79 (221)
T PRK12278          1 MFAVIKTGGKQYKVQAGDLLRVEKLA-AEAGETVQFGEVLMLGEGDNVTVGAPFVDGAAVQAEVIEQIKGDKVIHFKKRR   79 (221)
T ss_pred             CEEEEEeCCEEEEEeCCCEEEEeccC-CCCCCEEEEeEEEEEecCCCeEECCeEecCCEEEEEEEeecCCCCEEEEEeCC
Confidence            99999999999999999999999998 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCccCcceEEEEceEecc
Q 025545          217 RKNYRRTKGHRQELTKLRIVDIQGI  241 (251)
Q Consensus       217 RK~yrRk~GHRQ~yTrLRI~eI~~i  241 (251)
                      ||+|||++||||+||+|||++|..-
T Consensus        80 RK~yrrk~GHRQ~~T~i~I~~I~~~  104 (221)
T PRK12278         80 RQSSRRTKGHRQLLTLVRITEILAS  104 (221)
T ss_pred             CCCcccCCCcCCCcEEEEEEEEEcC
Confidence            9999999999999999999999864

>PF00829 Ribosomal_L21p: Ribosomal prokaryotic L21 protein; InterPro: IPR001787 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=4.3e-39  Score=253.53  Aligned_cols=96  Identities=53%  Similarity=0.858  Sum_probs=93.6

Q ss_pred             eEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEEEEEecC
Q 025545          137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  216 (251)
Q Consensus       137 mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KViVfK~KR  216 (251)
                      |||||++|||||||++||+|.||+|. +++|++|+|++||++++++++.+|+|||++|+|+|+|++|++++|+++|||||
T Consensus         1 myAIi~~ggkQykV~~gd~i~v~~l~-~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~v~K~kr   79 (96)
T PF00829_consen    1 MYAIIEIGGKQYKVEEGDVIDVERLD-AEVGDKIELDKVLLIGSEDFTLIGRPYLEGAKVEATVLEHGKGKKIIVFKKKR   79 (96)
T ss_dssp             -EEEEESSSEEEEESSSEEEEEESTS-SSTTSEEEETTEEEEETSSSTCSSSSSSSSSEEEEEEEEEEEEEEEEEEEEET
T ss_pred             CEEEEEECCEEEEEeCCCEEEECCcC-cCCCCEEEEEEEEEEecCCCeEECCccCCCcEEEEEEEeccCCCcEEEEEECC
Confidence            99999999999999999999999995 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCccCcceEE
Q 025545          217 RKNYRRTKGHRQELTKL  233 (251)
Q Consensus       217 RK~yrRk~GHRQ~yTrL  233 (251)
                      ||+|+|++||||+||+|
T Consensus        80 RK~y~r~~GhRq~~T~i   96 (96)
T PF00829_consen   80 RKRYRRKQGHRQPYTRI   96 (96)
T ss_dssp             TTTEEEEEEEEEEEEEE
T ss_pred             ccccccCCccCCCeEEC
Confidence            99999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L21 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L21 is known to bind to the 23S rRNA in the presence of L20. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Bacterial L21. Marchantia polymorpha chloroplast L21. Cyanelle L21. Plant chloroplast L21 (nuclear-encoded). Bacterial L21 is a protein of about 100 amino-acid residues, the mature form of the spinach chloroplast L21 has 200 residues.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XG0_V 2X9S_V 2XG2_V 3UZ1_2 2Y19_V 2WDL_V 3V23_V 2WRO_V 2WRL_V 2Y11_V ....

>KOG1686 consensus Mitochondrial/chloroplast ribosomal L21 protein [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=4.4e-31  Score=222.15  Aligned_cols=138  Identities=47%  Similarity=0.547  Sum_probs=131.7

Q ss_pred             HHHhcceEEcCCCCccccccccCCCeEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCcc
Q 025545          112 EAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMV  191 (251)
Q Consensus       112 ea~~ig~kv~g~l~~~~~~~k~~~~mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L  191 (251)
                      ||..++|+++|++..+....+.++..||||.+||+||+|..||.|++++++++.+||.|.|++|||+|+-++|++|+|.|
T Consensus         1 ea~~~e~v~vg~l~s~~~~~~kr~~~favv~v~srq~kvs~gd~iy~eg~~p~nv~d~i~l~kVlLvg~~~~T~~grpvv   80 (151)
T KOG1686|consen    1 MAASSETVTVGRLASACSHSIKRPSGFAVVSVGSRQRKVSSGDTIYTEGLKPKNVLDSIPLPKVLLVGPVEETRIGRPVV   80 (151)
T ss_pred             CcccceeEEEeccchhhhhccccCCccEEEEEcceeEEecCCCeeeecCccccccccccccceEEEecCcceeEecCccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEEeecCCceEEEEEecCCCCceeccCccCcceEEEEceEecccchhhhhh
Q 025545          192 PDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKRVEVAT  249 (251)
Q Consensus       192 ~~a~V~AtVleh~rg~KViVfK~KRRK~yrRk~GHRQ~yTrLRI~eI~~i~~~~~~~~  249 (251)
                      .+++|.|.|+++.+..|+++||+|++|+|||..||||+.|+|||+.|.+++.+....+
T Consensus        81 ~~vtv~aVv~e~g~~~kvvhfk~k~~k~tr~~~~~~qe~t~LrIt~it~ie~e~~~~v  138 (151)
T KOG1686|consen   81 KKVTVHAVVEEYGLLFKVVHFKSKQWKVTRRDLGHRQEATELRITCITGIELEKVLLV  138 (151)
T ss_pred             ccceEEEEeeeccccccEEEEEecchhhhhhhhcccCcccEEEEeeeeeeeeccceec
Confidence            9999999999999999999999999999999999999999999999999877664443

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box

Probab=93.29  E-value=0.024  Score=46.08  Aligned_cols=9  Identities=11%  Similarity=0.025  Sum_probs=3.7

Q ss_pred             ceEEcCCCC
Q 025545          117 GYKVLGPLR  125 (251)
Q Consensus       117 g~kv~g~l~  125 (251)
                      -++++++++
T Consensus        56 v~rYltSf~   64 (101)
T PF09026_consen   56 VKRYLTSFP   64 (101)
T ss_dssp             HHHHHCTS-
T ss_pred             Hhhhhhccc
Confidence            344454444

CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.

>KOG1686 consensus Mitochondrial/chloroplast ribosomal L21 protein [Translation, ribosomal structure and biogenesis]

Probab=83.33  E-value=0.58  Score=40.54  Aligned_cols=62  Identities=32%  Similarity=0.512  Sum_probs=51.0

Q ss_pred             cccccCCCeEEEEEECCEEEEEeCCCEEEec---ccCccCCCCeeEeceEEEEecCCceEecCCcc
Q 025545          129 RVFKKYEPAFAVVQIGSHQFKVSNGDSIFTE---RLKFCEVNDKLILNKVLLLGSQHQTIIGRPMV  191 (251)
Q Consensus       129 ~~~k~~~~mYAIVeigGKQYKV~~GD~I~Ve---kL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L  191 (251)
                      .+--.+...|++++...||+|+..-|.....   +|. ...+.-|++.++++++.++|+.+|+|.+
T Consensus        87 aVv~e~g~~~kvvhfk~k~~k~tr~~~~~~qe~t~Lr-It~it~ie~e~~~~v~~~nf~~vgk~~l  151 (151)
T KOG1686|consen   87 AVVEEYGLLFKVVHFKSKQWKVTRRDLGHRQEATELR-ITCITGIELEKVLLVGAPNFTAVGKPLL  151 (151)
T ss_pred             EEeeeccccccEEEEEecchhhhhhhhcccCcccEEE-EeeeeeeeeccceeccCccceeeccccC
Confidence            3444667788999999999999988887655   333 4578999999999999999999999964

>KOG3130 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.27  E-value=0.91  Score=45.27  Aligned_cols=15  Identities=20%  Similarity=0.071  Sum_probs=8.1

Q ss_pred             HHHHHhcceEEcCCC
Q 025545          110 EAEAAEIGYKVLGPL  124 (251)
Q Consensus       110 ~~ea~~ig~kv~g~l  124 (251)
                      ..+++.+-.+-.|..
T Consensus       337 ~~~~~r~~~~stG~~  351 (514)
T KOG3130|consen  337 KEEAKRKRKNSTGSG  351 (514)
T ss_pred             hhHHHHHHhcccccc
Confidence            345565555555555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
3bbo_T	257	Homology Model For The Spinach Chloroplast 50s Subu		1e-17
1nkw_P	100	Crystal Structure Of The Large Ribosomal Subunit Fr		5e-05

>pdb|3BBO|T Chain T, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 257

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 61/105 (58%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
           FAVV IGS Q+ V  G  I+T+RLK   VNDK++LNKVLL+G++  T IG P+V +    
Sbjct: 125 FAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVH 184
Query: 198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQGIE 242
                  LD KVI+F            GHRQ +T+++I  I G E
Sbjct: 185 AVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYE 229

>pdb|1NKW|P Chain P, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 100

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
           FA++Q G  Q++VS GD I  E L+  E  DK+ L K L +G + QT+ G          
Sbjct: 2   FAIIQTGGKQYRVSEGDVIRVESLQ-GEAGDKVEL-KALFVGGE-QTVFGED-AGKYTVQ 57
Query: 198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQG 240
                     K+ I             GHRQ  T ++I+ IQG
Sbjct: 58  AEVVEHGRGKKIYIRKYKSGVQYRRRTGHRQNFTAIKILGIQG 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
3bbo_T	257	Ribosomal protein L21; large ribosomal subunit, sp	6e-52
3r8s_R	103	50S ribosomal protein L21; protein biosynthesis, R	1e-37
3v2d_V	101	50S ribosomal protein L21; ribosome associated inh	3e-36
2zjr_O	100	50S ribosomal protein L21; ribosome, large ribosom	2e-35

>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 257

 Score =  168 bits (427), Expect = 6e-52
 Identities = 79/251 (31%), Positives = 111/251 (44%), Gaps = 13/251 (5%)

Query: 1   MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRH 60
           MA        S   A L   +    L  +     K  +       +S        +  R 
Sbjct: 1   MASATLAFSCSSLCATLKLPQNLNPLLLNVPPLSKPFSGVVSPPSLSRLSLLPVAAKRRR 60

Query: 61  FSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEAEAAEIGYKV 120
           F     + + E  +     +++        +               +  E    E    +
Sbjct: 61  FQEIPEELKAEFEEFQRPPNQKPQLSDVLPD-------------DFQAPEPGTPEYNDII 107

Query: 121 LGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGS 180
              L K      + E  FAVV IGS Q+ V  G  I+T+RLK   VNDK++LNKVLL+G+
Sbjct: 108 NQFLPKKGPPPPREEIIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGT 167

Query: 181 QHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 240
           +  T IG P+V +AAVHAVVEE  LD KVI+FK K++KNYRR  GHRQ +T+++I  I G
Sbjct: 168 KASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITG 227

Query: 241 IEKRVEVATAA 251
            E        A
Sbjct: 228 YEDYPASTLEA 238

>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ... Length = 103

 Score =  126 bits (320), Expect = 1e-37
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           +AV Q G  Q +VS G ++  E+L      + +   +VL++ +  +  IG P V    + 
Sbjct: 2   YAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIK 60

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 240
           A V  H    KV I K +RRK+YR+ +GHRQ  T ++I  I  
Sbjct: 61  AEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGISA 103

>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ... Length = 101

 Score =  123 bits (311), Expect = 3e-36
 Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 3/103 (2%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           FA+V+ G  Q++V  G  +  E+L   E    + L  +LL G +  T++G P+V  A+V 
Sbjct: 2   FAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELPVLLLGGEK--TVVGTPVVEGASVV 58

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 240
           A V  H    K+++ K K +  YRR KGHRQ  T+L I +I+G
Sbjct: 59  AEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEIRG 101

>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ... Length = 100

 Score =  120 bits (304), Expect = 2e-35
 Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           FA++Q G  Q++VS GD I  E L+  E  DK+ L  + + G   +  +         V 
Sbjct: 2   FAIIQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELKALFVGG---EQTVFGEDAGKYTVQ 57

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 240
           A V EH    K+ I K K    YRR  GHRQ  T ++I+ IQG
Sbjct: 58  AEVVEHGRGKKIYIRKYKSGVQYRRRTGHRQNFTAIKILGIQG 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
3r8s_R	103	50S ribosomal protein L21; protein biosynthesis, R	100.0
3v2d_V	101	50S ribosomal protein L21; ribosome associated inh	100.0
2zjr_O	100	50S ribosomal protein L21; ribosome, large ribosom	100.0
3bbo_T	257	Ribosomal protein L21; large ribosomal subunit, sp	100.0

>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...

Probab=100.00  E-value=9.1e-43  Score=277.26  Aligned_cols=102  Identities=34%  Similarity=0.566  Sum_probs=100.6

Q ss_pred             eEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEEEEEecC
Q 025545          137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  216 (251)
Q Consensus       137 mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KViVfK~KR  216 (251)
                      |||||++|||||||++||+|.||+|. +++|++|+|++|||+++++++.+|+|+|++|+|+|+|++|+|++|+++|||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~~VLlv~~~~~~~iG~P~v~~a~V~a~V~~~~k~~Kv~vfK~kr   79 (103)
T 3r8s_R            1 MYAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRR   79 (103)
T ss_dssp             CEEEEECSSSEEEEETTCEEEESCCC-SCTTCEEEECCEEEEESSSEEECSSSSCTTCEEEEEEEEEEECCCEEEEEEET
T ss_pred             CEEEEEECCEEEEEeCCCEEEECCcC-CCCCCEEEEeEEEEEecCCCEEECCcccCCcEEEEEEEeccCCCcEEEEEecC
Confidence            99999999999999999999999998 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCccCcceEEEEceEe
Q 025545          217 RKNYRRTKGHRQELTKLRIVDIQ  239 (251)
Q Consensus       217 RK~yrRk~GHRQ~yTrLRI~eI~  239 (251)
                      ||+|||++||||+||+|+|++|.
T Consensus        80 rK~yrrk~GHRQ~~T~l~I~~I~  102 (103)
T 3r8s_R           80 RKHYRKQQGHRQWFTDVKITGIS  102 (103)
T ss_dssp             TTTEEEEEEECCEEEEEEEEEEE
T ss_pred             CCCccCCCcccCCeEEEEEEEEE
Confidence            99999999999999999999996

>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...

Probab=100.00  E-value=8.6e-42  Score=271.07  Aligned_cols=101  Identities=41%  Similarity=0.634  Sum_probs=97.7

Q ss_pred             eEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEEEEEecC
Q 025545          137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  216 (251)
Q Consensus       137 mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KViVfK~KR  216 (251)
                      |||||++|||||||++||+|.||+|+ +++|++|+|+ |||+++++ +.+|+|+|++|+|+|+|++|+|++|+++|||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv~~~~-~~iG~P~v~~a~V~a~V~~~~k~~Kv~vfK~kr   77 (101)
T 3v2d_V            1 MFAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELP-VLLLGGEK-TVVGTPVVEGASVVAEVLGHGRGKKILVSKFKA   77 (101)
T ss_dssp             CEEEEEETTEEEEECTTCEEEESCCS-CCTTCEEEEC-EEEEESSS-CEECSSSCSSCCEEEEEEEEEECCCEEEEEEET
T ss_pred             CEEEEEeCCEEEEEeCCCEEEECCcC-CCCCCEEEEE-EEEECCCc-eEECCcccCCCEEEEEEeeccCCCcEEEEEECC
Confidence            99999999999999999999999998 8999999999 99998654 899999999999999999999999999999999


Q ss_pred             CCCceeccCccCcceEEEEceEec
Q 025545          217 RKNYRRTKGHRQELTKLRIVDIQG  240 (251)
Q Consensus       217 RK~yrRk~GHRQ~yTrLRI~eI~~  240 (251)
                      ||+|||++||||+||+|+|++|.+
T Consensus        78 rK~yrrk~GHRQ~~T~l~I~~I~g  101 (101)
T 3v2d_V           78 KVQYRRKKGHRQPYTELLIKEIRG  101 (101)
T ss_dssp             TTTEEEEEEECCEEEEEEEEEECC
T ss_pred             CCCcCCCCcccCCeEEEEEEEEeC
Confidence            999999999999999999999964

>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ...

Probab=100.00  E-value=3.3e-41  Score=267.09  Aligned_cols=99  Identities=41%  Similarity=0.629  Sum_probs=92.7

Q ss_pred             eEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEEEEEecC
Q 025545          137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  216 (251)
Q Consensus       137 mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KViVfK~KR  216 (251)
                      |||||++|||||||++||+|.||+|+ +++|++|+|+ |||+++ +++.+|+| |++|+|+|+|++|+|++|+++|||||
T Consensus         1 myAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv~~-~~~~iG~P-v~~a~V~a~V~~~~k~~Kv~vfK~kr   76 (100)
T 2zjr_O            1 MFAIIQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELK-ALFVGG-EQTVFGED-AGKYTVQAEVVEHGRGKKIYIRKYKS   76 (100)
T ss_dssp             ----CCSSCCSCCSCCEEEEECCSCC-SSCCEEEECC-SCEETT-SCEECSST-TTTSCEEEEEEECCBCCCEEEEEECS
T ss_pred             CEEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEE-EEEEcC-CCeEECCc-CCCCEEEEEEEeecCCCcEEEEEECC
Confidence            89999999999999999999999998 8999999999 999999 89999999 99999999999999999999999999


Q ss_pred             CCCceeccCccCcceEEEEceEe
Q 025545          217 RKNYRRTKGHRQELTKLRIVDIQ  239 (251)
Q Consensus       217 RK~yrRk~GHRQ~yTrLRI~eI~  239 (251)
                      ||+|||++||||+||+|+|++|.
T Consensus        77 rK~yrrk~GHRQ~~T~l~I~~I~   99 (100)
T 2zjr_O           77 GVQYRRRTGHRQNFTAIKILGIQ   99 (100)
T ss_dssp             SSCCEEEEEECCBEEEEECCCC-
T ss_pred             CCCCcCCCCccCCcEEEEEEEEE
Confidence            99999999999999999999986

>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=3.4e-41  Score=303.02  Aligned_cols=114  Identities=55%  Similarity=0.810  Sum_probs=102.3

Q ss_pred             cccCCCeEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEE
Q 025545          131 FKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVI  210 (251)
Q Consensus       131 ~k~~~~mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KVi  210 (251)
                      .+.+..|||||++|||||||++||+|.|++|+.+++|++|.|++|||||++++++||+|||++++|+|+|++|+|++||+
T Consensus       118 ~k~~~~MYAIIetGGKQYKV~~GD~I~VEKL~~aevGd~V~LdkVLlVg~~d~t~VG~P~V~gAkV~AtVveh~KgkKIi  197 (257)
T 3bbo_T          118 PPREEIIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVI  197 (257)
T ss_dssp             ------CCCCCCSSSCCCCCCTTCCCCCCCCTTSCTTCEEECTTCCCBCSSSCBCCSSSSCSSCCCEEECCCCCCCSCCC
T ss_pred             CCcCCCeEEEEEECCEEEEEeCCCEEEEeCCCCCCCCCEEEEEEEEEEeCCCCeEeCCcccCCCEEEEEEEeecCCCcEE
Confidence            45677899999999999999999999999998679999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCceeccCccCcceEEEEceEecccch
Q 025545          211 IFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKR  244 (251)
Q Consensus       211 VfK~KRRK~yrRk~GHRQ~yTrLRI~eI~~i~~~  244 (251)
                      ||||||||||||++||||+||+|||++|.+.+.+
T Consensus       198 VFK~KRRK~yRRk~GHRQ~~T~LrI~~I~~~g~~  231 (257)
T 3bbo_T          198 VFKYKKKKNYRRNIGHRQPITRIKITGITGYEDY  231 (257)
T ss_dssp             EEECCTTTTCCEEECCCCCCCCCCCCCCCC----
T ss_pred             EEEeCCCCCCcCCCCccCCcEEEEEEEEEcCCCC
Confidence            9999999999999999999999999999875443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d2qamr1	103	b.155.1.1 (R:1-103) Ribosomal protein L21p {Escher	1e-35
d2j01v1	101	b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermu	5e-32
d2zjro1	94	b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinoco	8e-27

>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia coli [TaxId: 562]} Length = 103

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Escherichia coli [TaxId: 562]

 Score =  120 bits (303), Expect = 1e-35
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 1/101 (0%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           +AV Q G  Q +VS G ++  E+L      + +   +VL++ +  +  IG P V    + 
Sbjct: 2   YAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIK 60

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 238
           A V  H    KV I K +RRK+YR+ +GHRQ  T ++I  I
Sbjct: 61  AEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGI 101

>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]} Length = 101

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Thermus thermophilus [TaxId: 274]

 Score =  111 bits (278), Expect = 5e-32
 Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 3/103 (2%)

Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 197
           FA+V+ G  Q++V  G  +  E+L   E    + L  +LL G   +T++G P+V  A+V 
Sbjct: 2   FAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELPVLLLGG--EKTVVGTPVVEGASVV 58

Query: 198 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 240
           A V  H    K+++ K K +  YRR KGHRQ  T+L I +I+G
Sbjct: 59  AEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEIRG 101

>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 1299]} Length = 94

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 97.6 bits (243), Expect = 8e-27
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 141 VQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVV 200
           +Q G  Q++VS GD I  E L+  E  DK+ L  + +     +  +         V A V
Sbjct: 1   IQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELKALFV---GGEQTVFGEDAGKYTVQAEV 56

Query: 201 EEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 238
            EH    K+ I K K    YRR  GHRQ  T ++I+ I
Sbjct: 57  VEHGRGKKIYIRKYKSGVQYRRRTGHRQNFTAIKILGI 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d2qamr1	103	Ribosomal protein L21p {Escherichia coli [TaxId: 5	100.0
d2j01v1	101	Ribosomal protein L21p {Thermus thermophilus [TaxI	100.0
d2zjro1	94	Ribosomal protein L21p {Deinococcus radiodurans [T	100.0

>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-41  Score=268.90  Aligned_cols=102  Identities=34%  Similarity=0.566  Sum_probs=100.2

Q ss_pred             eEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEEEEEecC
Q 025545          137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  216 (251)
Q Consensus       137 mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KViVfK~KR  216 (251)
                      |||||++|||||||++||+|.||+|. .++|++|.|++|||+++++++.+|+|||++|+|+|+|++|+|++|+++|||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~v~~l~-~~~G~~i~~~~VLlv~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~kr   79 (103)
T d2qamr1           1 MYAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRR   79 (103)
T ss_dssp             CCCCCCSSSSCCCCCSSCCEEESCCC-CCTTCEEEECCCSCCCSSSCCCCSSSSCSSCCEEEEEEEEECCCCEEEEEECT
T ss_pred             CEEEEEECCEEEEEcCCCEEEEeccC-CCCCCcEEehhheEcCCCCcEEeCCCcccccEEEEEEeeecCCccEEEEEecC
Confidence            99999999999999999999999997 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCccCcceEEEEceEe
Q 025545          217 RKNYRRTKGHRQELTKLRIVDIQ  239 (251)
Q Consensus       217 RK~yrRk~GHRQ~yTrLRI~eI~  239 (251)
                      ||+|||++||||+||+|+|++|.
T Consensus        80 rk~yrr~~GHRQ~~T~i~I~~I~  102 (103)
T d2qamr1          80 RKHYRKQQGHRQWFTDVKITGIS  102 (103)
T ss_dssp             TSSCEEEEEECCCEEEECCCCCC
T ss_pred             CCcccccCcccCCeEEEEEEEEe
Confidence            99999999999999999999985

>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.7e-39  Score=255.35  Aligned_cols=101  Identities=38%  Similarity=0.573  Sum_probs=94.8

Q ss_pred             eEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEEEEEecC
Q 025545          137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  216 (251)
Q Consensus       137 mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KViVfK~KR  216 (251)
                      |||||++|||||||++||+|.|+++. +++|+.|.|+.||+. + +.+.||+|+|++|+|+|+|++|+|++||++|||||
T Consensus         1 MyAVi~~gGkQykV~~Gd~l~v~~l~-~~~g~~v~~~~ll~~-~-~~~~iG~P~l~~a~V~a~V~~~~k~~Kv~vfK~kr   77 (101)
T d2j01v1           1 MFAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELPVLLLG-G-EKTVVGTPVVEGASVVAEVLGHGRGKKILVSKFKA   77 (101)
T ss_dssp             CCCEEEETTEEEECCSSCCCCCCCCS-CCSSSCCBCCCCSCC-C-SSTTCCCCCGGGCSSCCCCEECCCCCCCCCCCCCE
T ss_pred             CEEEEEECCEEEEEcCCCEEEEeccc-CCCCccEEEEEEEEc-C-CceeeCCcccCCcEEEEEEEEecCCCcEEEEEEcC
Confidence            99999999999999999999999997 899999999965553 3 45789999999999999999999999999999999


Q ss_pred             CCCceeccCccCcceEEEEceEec
Q 025545          217 RKNYRRTKGHRQELTKLRIVDIQG  240 (251)
Q Consensus       217 RK~yrRk~GHRQ~yTrLRI~eI~~  240 (251)
                      ||||||++||||+||+|+|++|++
T Consensus        78 RK~y~R~~GHRQ~~T~l~I~~I~G  101 (101)
T d2j01v1          78 KVQYRRKKGHRQPYTELLIKEIRG  101 (101)
T ss_dssp             ECCCCEECCCCCCCCCCCCEECCC
T ss_pred             cCCcccCCcccCCeEEEEEEEeeC
Confidence            999999999999999999999974

>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=6.1e-35  Score=226.73  Aligned_cols=94  Identities=38%  Similarity=0.525  Sum_probs=86.0

Q ss_pred             EEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEEEEEecCCCCc
Q 025545          141 VQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNY  220 (251)
Q Consensus       141 VeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KViVfK~KRRK~y  220 (251)
                      |++|||||||++||+|.||+|. +++|++|.|+.||+.|  +.++ |.|++.+|+|+|+|++|+|++|+++|||||||+|
T Consensus         1 I~tGGKQykV~~Gd~i~vekl~-~~~G~~i~~~~vl~~g--~~~~-~g~~l~~a~V~a~V~~~~r~~Ki~vfK~krrK~y   76 (94)
T d2zjro1           1 IQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELKALFVGG--EQTV-FGEDAGKYTVQAEVVEHGRGKKIYIRKYKSGVQY   76 (94)
T ss_dssp             CCSSCCSCCSCCEEEEECCSCC-SSCCEEEECCSCEETT--SCEE-CSSTTTTSCEEEEEEECCBCCCEEEEEECSSSCC
T ss_pred             CccCCEEEEEcCCCEEEEeccc-CccCCceEEeeeEEcc--cccc-cCCCCceeEEEEEEEEeccCCceEEEEEcCCCCc
Confidence            5789999999999999999998 7999999999988733  3454 5566999999999999999999999999999999


Q ss_pred             eeccCccCcceEEEEceE
Q 025545          221 RRTKGHRQELTKLRIVDI  238 (251)
Q Consensus       221 rRk~GHRQ~yTrLRI~eI  238 (251)
                      ||++||||+||+|+|++|
T Consensus        77 rRk~GHRQ~~T~vkI~~I   94 (94)
T d2zjro1          77 RRRTGHRQNFTAIKILGI   94 (94)
T ss_dssp             EEEEEECCBEEEEECCCC
T ss_pred             cccCCccCCcEEEEEEEC
Confidence            999999999999999987