Citrus Sinensis ID: 025548

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccccEEEEEcHHHHHHHHHHHHHHHHccccccccccccc
ccccHEEEccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccc
mpirniavghpreathPDALRAALAEFISTLIFVFagegsgmafnklthngantpsGLVAASVAHAFALFVAVAVGanisgghvnpavtfgafvggNISLLRGILYWIAQLLGSTVACLLLKFvtngqttsAFALSSGVGAWNAVVFEIVMTFGLVYTVYAtaldpkkgslgtiapiAIGFIVGANilaggafdgasmnpavsfgpalvswswdnhwvywvgpliggglAGIVYEFFFInqsheqlpttey
mpirniavghpreatHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQsheqlpttey
MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSglvaasvahafalfvavavgaNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY
******************ALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFIN***********
********GHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQS*********
MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSH********
*PIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSH********
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
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MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query251 2.2.26 [Sep-21-2011]
P25818251 Aquaporin TIP1-1 OS=Arabi yes no 1.0 1.0 0.828 1e-117
Q41963253 Aquaporin TIP1-2 OS=Arabi no no 1.0 0.992 0.790 1e-109
P50156250 Probable aquaporin TIP1-1 yes no 0.996 1.0 0.808 1e-107
O64964250 Aquaporin TIP1-1 OS=Zea m N/A no 0.996 1.0 0.780 1e-103
Q9FY14250 Probable aquaporin TIP-ty N/A no 0.996 1.0 0.788 1e-102
O82598252 Aquaporin TIP1-3 OS=Arabi no no 1.0 0.996 0.738 1e-102
P42067249 Probable aquaporin TIP-ty N/A no 0.992 1.0 0.780 1e-100
Q94CS9252 Probable aquaporin TIP1-2 no no 1.0 0.996 0.753 1e-100
Q9ATM0254 Aquaporin TIP1-2 OS=Zea m N/A no 0.992 0.980 0.76 3e-98
Q9FGL2250 Aquaporin TIP2-3 OS=Arabi no no 0.976 0.98 0.634 1e-79
>sp|P25818|TIP11_ARATH Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1 Back     alignment and function desciption
 Score =  420 bits (1079), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/251 (82%), Positives = 226/251 (90%)

Query: 1   MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVA 60
           MPIRNIA+G P EAT PDAL+AALAEFISTLIFV AG GSGMAFNKLT NGA TPSGLVA
Sbjct: 1   MPIRNIAIGRPDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVA 60

Query: 61  ASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLL 120
           A+VAHAF LFVAV+VGANISGGHVNPAVTFGAF+GGNI+LLRGILYWIAQLLGS VACL+
Sbjct: 61  AAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLI 120

Query: 121 LKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIG 180
           LKF T G    AF LS+GVG  NA VFEIVMTFGLVYTVYATA+DPK GSLGTIAPIAIG
Sbjct: 121 LKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPIAIG 180

Query: 181 FIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFIN 240
           FIVGANILAGGAF GASMNPAV+FGPA+VSW+W NHWVYW GPL+GGG+AG++YE FFIN
Sbjct: 181 FIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLVGGGIAGLIYEVFFIN 240

Query: 241 QSHEQLPTTEY 251
            +HEQLPTT+Y
Sbjct: 241 TTHEQLPTTDY 251
Water channel required to facilitate the transport of water, diffusion of amino acids and/or peptides from the vacuolar compartment to the cytoplasm. Does not promote glycerol permeability. May play a role in the control of cell turgor and cell expansion. Its function is impaired by Hg(2+). May be involved in a vesicle-based metabolite routing through or between pre-vacuolar compartments and the central vacuole. Transports urea in yeast cells in a pH-independent manner. Transports H(2)O(2) in yeast cells.
Arabidopsis thaliana (taxid: 3702)
>sp|Q41963|TIP12_ARATH Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2 Back     alignment and function description
>sp|P50156|TIP11_ORYSJ Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|O64964|TIP11_MAIZE Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FY14|TIP1_MEDTR Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1 Back     alignment and function description
>sp|O82598|TIP13_ARATH Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1 Back     alignment and function description
>sp|P42067|TIP1_MEDSA Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2 Back     alignment and function description
>sp|Q94CS9|TIP12_ORYSJ Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATM0|TIP12_MAIZE Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FGL2|TIP23_ARATH Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query251
284520984252 aquaporin [Jatropha curcas] 1.0 0.996 0.892 1e-123
260408314252 tonoplast intrinsic protein [Hevea brasi 1.0 0.996 0.884 1e-122
300793602251 TPA_inf: aquaporin TIP1;4 [Gossypium hir 1.0 1.0 0.872 1e-121
255556846251 tonoplast intrinsic protein, putative [R 1.0 1.0 0.908 1e-121
225441155251 PREDICTED: aquaporin TIP1-1 [Vitis vinif 1.0 1.0 0.868 1e-120
227434194251 tonoplast intrinsic protein [Gossypium h 1.0 1.0 0.860 1e-119
38198150251 aquaporin [Ricinus communis] 1.0 1.0 0.900 1e-119
147778786251 hypothetical protein VITISV_032929 [Viti 1.0 1.0 0.860 1e-119
111379086251 putative aquaporin [Vitis vinifera] 1.0 1.0 0.856 1e-119
300793608284 TPA_inf: aquaporin TIP1;6 [Gossypium hir 0.988 0.873 0.870 1e-119
>gi|284520984|gb|ADB93067.1| aquaporin [Jatropha curcas] Back     alignment and taxonomy information
 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/252 (89%), Positives = 239/252 (94%), Gaps = 1/252 (0%)

Query: 1   MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVA 60
           MPIRNIA+GHP+EATHPDAL+AALAEFISTLIFVFAGEGSGMAFNKLT+NGA TP+GLVA
Sbjct: 1   MPIRNIAIGHPQEATHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTNNGATTPAGLVA 60

Query: 61  ASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLL 120
           AS+AH F LFVAV+VGANISGGHVNPAVTFGAFVGGNI+LLRGILYWIAQLLGSTVACLL
Sbjct: 61  ASLAHGFGLFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGILYWIAQLLGSTVACLL 120

Query: 121 LKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIG 180
           LKF T G TTSAFALSSGVG WNA VFEIVMTFGLVYTVYATA+DPKKGSLGTIAPIAIG
Sbjct: 121 LKFSTGGLTTSAFALSSGVGVWNAFVFEIVMTFGLVYTVYATAIDPKKGSLGTIAPIAIG 180

Query: 181 FIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFI- 239
           FIVGANILAGGAFDGASMNPAV FGPALVSWSWDNHWVYW GPL+GGGLAG+VYEFFFI 
Sbjct: 181 FIVGANILAGGAFDGASMNPAVPFGPALVSWSWDNHWVYWAGPLVGGGLAGLVYEFFFIG 240

Query: 240 NQSHEQLPTTEY 251
           + +HEQLPT +Y
Sbjct: 241 HNTHEQLPTADY 252

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|260408314|gb|ACX37451.1| tonoplast intrinsic protein [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|300793602|tpg|DAA33867.1| TPA_inf: aquaporin TIP1;4 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255556846|ref|XP_002519456.1| tonoplast intrinsic protein, putative [Ricinus communis] gi|223541319|gb|EEF42870.1| tonoplast intrinsic protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225441155|ref|XP_002267788.1| PREDICTED: aquaporin TIP1-1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|227434194|gb|ACP28878.1| tonoplast intrinsic protein [Gossypium hirsutum] gi|300793600|tpg|DAA33866.1| TPA_inf: aquaporin TIP1;3 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|38198150|emb|CAE53881.1| aquaporin [Ricinus communis] Back     alignment and taxonomy information
>gi|147778786|emb|CAN69323.1| hypothetical protein VITISV_032929 [Vitis vinifera] Back     alignment and taxonomy information
>gi|111379086|gb|ABH09330.1| putative aquaporin [Vitis vinifera] Back     alignment and taxonomy information
>gi|300793608|tpg|DAA33869.1| TPA_inf: aquaporin TIP1;6 [Gossypium hirsutum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query251
TAIR|locus:2057906251 GAMMA-TIP "gamma tonoplast int 1.0 1.0 0.756 1.1e-101
TAIR|locus:2088867253 TIP2 "tonoplast intrinsic prot 1.0 0.992 0.723 5.9e-96
TAIR|locus:2116987252 TIP1;3 "tonoplast intrinsic pr 1.0 0.996 0.666 9.6e-89
TAIR|locus:2030968267 BETA-TIP "beta-tonoplast intri 0.960 0.902 0.548 1.6e-72
TAIR|locus:2197279268 TIP3;1 [Arabidopsis thaliana ( 0.940 0.880 0.568 2e-72
TAIR|locus:2168953250 TIP2;3 "tonoplast intrinsic pr 0.972 0.976 0.579 6.3e-69
TAIR|locus:2130883250 TIP2;2 "tonoplast intrinsic pr 0.972 0.976 0.571 1.3e-68
TAIR|locus:2094977250 DELTA-TIP "delta tonoplast int 0.924 0.928 0.578 6.5e-67
TAIR|locus:2043505249 TIP4;1 "tonoplast intrinsic pr 0.944 0.951 0.522 6e-64
TAIR|locus:2099595256 TIP5;1 "tonoplast intrinsic pr 0.864 0.847 0.431 1.5e-42
TAIR|locus:2057906 GAMMA-TIP "gamma tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 190/251 (75%), Positives = 206/251 (82%)

Query:     1 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXX 60
             MPIRNIA+G P EAT PDAL+AALAEFISTLIFV AG GSGMAFNKLT NGA TPS    
Sbjct:     1 MPIRNIAIGRPDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVA 60

Query:    61 XXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLL 120
                              NISGGHVNPAVTFGAF+GGNI+LLRGILYWIAQLLGS VACL+
Sbjct:    61 AAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLI 120

Query:   121 LKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIG 180
             LKF T G    AF LS+GVG  NA VFEIVMTFGLVYTVYATA+DPK GSLGTIAPIAIG
Sbjct:   121 LKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPIAIG 180

Query:   181 FIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFIN 240
             FIVGANILAGGAF GASMNPAV+FGPA+VSW+W NHWVYW GPL+GGG+AG++YE FFIN
Sbjct:   181 FIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLVGGGIAGLIYEVFFIN 240

Query:   241 QSHEQLPTTEY 251
              +HEQLPTT+Y
Sbjct:   241 TTHEQLPTTDY 251
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA;IDA;RCA
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=TAS
GO:0015250 "water channel activity" evidence=ISS;IDA
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009705 "plant-type vacuole membrane" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0015204 "urea transmembrane transporter activity" evidence=IGI
GO:0015840 "urea transport" evidence=IGI
GO:0005773 "vacuole" evidence=IDA
GO:0080170 "hydrogen peroxide transmembrane transport" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0000326 "protein storage vacuole" evidence=IDA
GO:0042807 "central vacuole" evidence=IDA
GO:0006096 "glycolysis" evidence=RCA
GO:0006598 "polyamine catabolic process" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009269 "response to desiccation" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009698 "phenylpropanoid metabolic process" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2088867 TIP2 "tonoplast intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116987 TIP1;3 "tonoplast intrinsic protein 1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030968 BETA-TIP "beta-tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197279 TIP3;1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168953 TIP2;3 "tonoplast intrinsic protein 2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130883 TIP2;2 "tonoplast intrinsic protein 2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094977 DELTA-TIP "delta tonoplast integral protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043505 TIP4;1 "tonoplast intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099595 TIP5;1 "tonoplast intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P50156TIP11_ORYSJNo assigned EC number0.80870.99601.0yesno
P25818TIP11_ARATHNo assigned EC number0.82861.01.0yesno
P42067TIP1_MEDSANo assigned EC number0.78080.99201.0N/Ano
Q84RL6TIP23_MAIZENo assigned EC number0.61130.97600.9879N/Ano
P33560TIP_ANTMANo assigned EC number0.62190.97600.98N/Ano
P09011MIP_RATNo assigned EC number0.39730.84860.8160yesno
A2IBY8MIP_CANFANo assigned EC number0.41590.84060.8022yesno
P30301MIP_HUMANNo assigned EC number0.40700.84060.8022yesno
P23958TIPA_PHAVUNo assigned EC number0.56641.00.9804N/Ano
Q41963TIP12_ARATHNo assigned EC number0.79051.00.9920nono
Q9ATL3TIP44_MAIZENo assigned EC number0.52820.97600.9722N/Ano
P24422TIP2_TOBACNo assigned EC number0.63670.97210.976N/Ano
Q9FY14TIP1_MEDTRNo assigned EC number0.78880.99601.0N/Ano
Q9ATM0TIP12_MAIZENo assigned EC number0.760.99200.9803N/Ano
Q9ATL9TIP21_MAIZENo assigned EC number0.60720.98000.9879N/Ano
Q9ATL8TIP22_MAIZENo assigned EC number0.61530.98400.988N/Ano
Q9ATL7TIP31_MAIZENo assigned EC number0.60560.97600.9351N/Ano
A4L9J0MIP_RABITNo assigned EC number0.42030.84060.8022yesno
O82598TIP13_ARATHNo assigned EC number0.73801.00.9960nono
P06624MIP_BOVINNo assigned EC number0.40700.84060.8022yesno
P21653TIP1_TOBACNo assigned EC number0.63410.97600.98N/Ano
O64964TIP11_MAIZENo assigned EC number0.78080.99601.0N/Ano
Q94CS9TIP12_ORYSJNo assigned EC number0.75391.00.9960nono
Q9AT75TIP32_MAIZENo assigned EC number0.57810.98800.9323N/Ano
P51180MIP_MOUSENo assigned EC number0.39280.84860.8098yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
TIP1;2
SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (251 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00022377001
SubName- Full=Chromosome chr14 scaffold_26, whole genome shotgun sequence; (270 aa)
  •     0.495
GSVIVG00003297001
SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (522 aa)
•     • 0.441

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query251
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 1e-159
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 3e-93
pfam00230218 pfam00230, MIP, Major intrinsic protein 3e-87
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 3e-73
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 4e-70
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 9e-56
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 4e-34
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 9e-25
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 7e-24
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 1e-22
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 1e-21
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 5e-21
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 8e-17
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 0.003
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information 
 Score =  440 bits (1133), Expect = e-159
 Identities = 213/252 (84%), Positives = 231/252 (91%), Gaps = 1/252 (0%)

Query: 1   MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVA 60
           MPIR IA+G P EA+HPDAL+AALAEFISTLIFVFAGEGSGMAFNKLT NG+ TP+GLVA
Sbjct: 1   MPIRRIAIGTPGEASHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVA 60

Query: 61  ASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLL 120
           A++AHAFALFVAV+VGANISGGHVNPAVTFGAF+GGNI+LLRGILYWIAQLLGS VACLL
Sbjct: 61  AALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLL 120

Query: 121 LKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIG 180
           LKF T G  TSAF+LSSGVG WNA VFEIVMTFGLVYTVYATA+DPKKG LG IAPIAIG
Sbjct: 121 LKFSTGGLETSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIG 180

Query: 181 FIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFIN 240
           FIVGANILAGGAFDGASMNPAVSFGPA+VSW+W NHWVYW GPLIGGG+AG+VYE  FI 
Sbjct: 181 FIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFIG 240

Query: 241 QS-HEQLPTTEY 251
            + HEQLPTT+Y
Sbjct: 241 STTHEQLPTTDY 252

Length = 252
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 251
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00184 296 aquaporin NIP1; Provisional 99.66
PLN00026 298 aquaporin NIP; Provisional 99.65
PLN00182283 putative aquaporin NIP4; Provisional 99.62
PLN00183274 putative aquaporin NIP7; Provisional 99.61
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.59
PLN00167 256 aquaporin TIP5; Provisional 99.56
PLN00166 250 aquaporin TIP2; Provisional 99.55
PRK05420 231 aquaporin Z; Provisional 99.52
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.52
PTZ00016 294 aquaglyceroporin; Provisional 99.51
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.5
PLN00027 252 aquaporin TIP; Provisional 99.5
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.45
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.4
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.21
COG2116265 FocA Formate/nitrite family of transporters [Inorg 87.64
PRK10805285 formate transporter; Provisional 84.04
PRK11562268 nitrite transporter NirC; Provisional 82.92
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=7.5e-53  Score=356.02  Aligned_cols=231  Identities=49%  Similarity=0.820  Sum_probs=209.7

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHH
Q 025548           12 REATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFG   91 (251)
Q Consensus        12 ~~~~~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~   91 (251)
                      .+..+.+.+|++++||++|++++|++|++......     ...+.+.+.+++.+|+.+++.+++++++||||+|||||++
T Consensus         3 ~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~-----~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a   77 (238)
T KOG0223|consen    3 GELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK-----YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLA   77 (238)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHH
Confidence            56678899999999999999999999998875432     2346778899999999999999999999999999999999


Q ss_pred             HHHhcCCcchhhHHHHHHHhHhHHHHHHHHHHHhcCC----cccccccCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 025548           92 AFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQ----TTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPK  167 (251)
Q Consensus        92 ~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~E~~~T~~lv~~v~~~~~~~~  167 (251)
                      +++.|++++.++..|+++|++|+++|+.+.+.+.+.+    ......++++.+.+|+++.|++.|+.|+++++.++.|+|
T Consensus        78 ~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~  157 (238)
T KOG0223|consen   78 FAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPR  157 (238)
T ss_pred             HHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCC
Confidence            9999999999999999999999999999999999864    233456788899999999999999999999999788988


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHcccCCCceeecchhhhHHHHHHHHHHHHHhhCCCCCCCC
Q 025548          168 KGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLP  247 (251)
Q Consensus       168 ~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~~~~~~wvy~~~p~~Ga~la~~~~~~~~~~~~~~~~~  247 (251)
                      ++   .+.|+.||+.+.+.+++++++||++|||||+|||++..+.|+++||||++|++|+++++++|+.++.++.+++.+
T Consensus       158 ~~---~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~~~~~~~  234 (238)
T KOG0223|consen  158 RS---ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPDESEPTK  234 (238)
T ss_pred             Cc---ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCccccccC
Confidence            75   689999999999999999999999999999999999999999999999999999999999999999988666555


Q ss_pred             CCC
Q 025548          248 TTE  250 (251)
Q Consensus       248 ~~~  250 (251)
                      +.+
T Consensus       235 ~~~  237 (238)
T KOG0223|consen  235 SAD  237 (238)
T ss_pred             ccC
Confidence            544

>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query251
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 9e-33
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 2e-32
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 2e-32
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 2e-32
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 2e-32
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 2e-30
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 6e-30
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 7e-30
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 5e-29
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 5e-28
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-25
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-25
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-25
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-25
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-25
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 1e-23
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 1e-14
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 6e-14
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 1e-09
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 3e-09
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 3e-09
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 4e-09
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 5e-09
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 6e-09
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 1e-08
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 1e-08
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 2e-06
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 1e-04
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 3e-04
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure 
Iteration: 1

 Score =  136 bits (343), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 119/224 (53%), Gaps = 11/224 (4%)
Query: 21  RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNIS 80
           RA  AEF +TL +VF G G+ + +       A  P                      +IS
Sbjct: 11  RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHIS 63
Query: 81  GGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS--- 137
           G HVNPAVTF   VG  +SLLR I Y +AQLLG+     +L  VT        AL++   
Sbjct: 64  GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 123
Query: 138 GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGAS 197
           GV    A + EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA 
Sbjct: 124 GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAG 182
Query: 198 MNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQ 241
           MNPA SF PA+++ ++ NHWVYWVGP+IG GL  ++Y+F    +
Sbjct: 183 MNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 226
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query251
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 2e-97
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 1e-94
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 3e-93
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 1e-92
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 2e-91
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 6e-91
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 2e-90
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 3e-88
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 1e-04
2o9g_A234 Aquaporin Z; integral membrane protein, structural 8e-82
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-05
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 1e-78
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 2e-69
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 4e-42
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 3e-39
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
 Score =  287 bits (737), Expect = 2e-97
 Identities = 81/252 (32%), Positives = 125/252 (49%), Gaps = 7/252 (2%)

Query: 2   PIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAA 61
           P     +   +        +A  AEF++ LIFV    GS + +          P  +V  
Sbjct: 34  PSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSE---NPLPVDMVLI 90

Query: 62  SVAHAFALFVAVAVGANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLL 121
           S+    ++   V    +ISGGH+NPAVT        IS+ + + Y  AQ LG+ +   +L
Sbjct: 91  SLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL 150

Query: 122 KFVTNGQTTSAFA---LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIA 178
             VT            +   + A + ++ E+++TF LV+T++A+  D K+  +     +A
Sbjct: 151 YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASC-DDKRTDVTGSVALA 209

Query: 179 IGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 238
           IGF V    L    + GASMNPA SFGPA++  +W+NHW+YWVGP+IG  LAG +YE+ F
Sbjct: 210 IGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 269

Query: 239 INQSHEQLPTTE 250
                 +    E
Sbjct: 270 CPDVELKRRLKE 281
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query251
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.64
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.56
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.47
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.44
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.44
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.42
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.41
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.41
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.4
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.4
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.39
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.38
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.37
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 83.95
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=1.6e-52  Score=368.96  Aligned_cols=226  Identities=35%  Similarity=0.609  Sum_probs=195.9

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHHH
Q 025548           13 EATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGA   92 (251)
Q Consensus        13 ~~~~~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~~   92 (251)
                      +..+.+++|++++||+|||+|+|++++++++.  . +.....+.+++.+++++|+++++++++++++||||+|||||+++
T Consensus        45 ~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~--~-~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal  121 (340)
T 3iyz_A           45 GVWTQAFWKAVTAEFLAMLIFVLLSVGSTINW--G-GSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAM  121 (340)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-cCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHH
Confidence            34456889999999999999999999998743  1 11222346788899999999999999999999999999999999


Q ss_pred             HHhcCCcchhhHHHHHHHhHhHHHHHHHHHHHhcCCc---ccccccCCCCchHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 025548           93 FVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT---TSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKG  169 (251)
Q Consensus        93 ~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~E~~~T~~lv~~v~~~~~~~~~~  169 (251)
                      ++.|+++|.+++.|+++|++||++|+.+++.++++..   ...+.+.+..+..++|+.|+++||+|+++++.+ .|+++.
T Consensus       122 ~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~-~d~~~~  200 (340)
T 3iyz_A          122 VCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFAS-CDDKRT  200 (340)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHh-hcCccC
Confidence            9999999999999999999999999999999986432   223455667889999999999999999999986 555443


Q ss_pred             CCCchHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHcccCCCceeecchhhhHHHHHHHHHHHHHhhCCC
Q 025548          170 SLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQS  242 (251)
Q Consensus       170 ~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~~~~~~wvy~~~p~~Ga~la~~~~~~~~~~~~  242 (251)
                      ......|+.||+++.+....++++||++|||||||||+++.++|.++||||+||++|+++|+++|++++.++.
T Consensus       201 ~~~~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~~w~~~WVywvgPiiGailaallY~~l~~p~~  273 (340)
T 3iyz_A          201 DVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDV  273 (340)
T ss_pred             CcccchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHHhCCCh
Confidence            3345679999999998888888999999999999999999999999999999999999999999999987654
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 251
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 8e-43
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 3e-39
d1ymga1 234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 0.001
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 5e-34
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 7e-32
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  143 bits (362), Expect = 8e-43
 Identities = 83/238 (34%), Positives = 130/238 (54%), Gaps = 6/238 (2%)

Query: 12  REATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFV 71
            E       RA +AEF++ ++F+F   GS + F+    +   T +      V+ AF L +
Sbjct: 3   SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSI 62

Query: 72  AVAVGA--NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG-- 127
           A    +  +ISG H+NPAVT G  +   IS+LR I+Y IAQ +G+ VA  +L  +T+   
Sbjct: 63  ATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP 122

Query: 128 -QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGAN 186
             +    AL+ GV +   +  EI+ T  LV  V AT  D ++  LG   P+AIGF V   
Sbjct: 123 DNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALG 181

Query: 187 ILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 244
            L    + G  +NPA SFG ++++ ++ +HW++WVGP IG  LA ++Y+F    +S +
Sbjct: 182 HLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSD 239
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query251
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.54
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.43
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.41
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.28
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-50  Score=343.39  Aligned_cols=223  Identities=37%  Similarity=0.642  Sum_probs=196.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHhc
Q 025548           17 PDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSGLVAASVAHAFALFVAVAVGANISGGHVNPAVTFGAFVGG   96 (251)
Q Consensus        17 ~~~~~~~~~Ef~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~~sGah~NPavtl~~~l~g   96 (251)
                      .++||++++||+||++++|.++++.....       +...+.+.+++++|++++..++.++++||||+|||||+++++.|
T Consensus         2 ~s~~r~~laEf~GT~~lvf~g~gs~~~~~-------~~~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g   74 (234)
T d1ymga1           2 ASFWRAICAEFFASLFYVFFGLGASLRWA-------PGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGS   74 (234)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHCSCC--------CHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhcc
Confidence            57899999999999999999998765321       12456678899999999999999999999999999999999999


Q ss_pred             CCcchhhHHHHHHHhHhHHHHHHHHHHHhcCCcc---cccccCCCCchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCc
Q 025548           97 NISLLRGILYWIAQLLGSTVACLLLKFVTNGQTT---SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT  173 (251)
Q Consensus        97 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~E~~~T~~lv~~v~~~~~~~~~~~~~~  173 (251)
                      +++|++.+.|+++|++|+++|+.+.+.++++...   ....+.++.+..++++.|++.|++|+++++.+ .|+++.....
T Consensus        75 ~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~-~~~~~~~~~~  153 (234)
T d1ymga1          75 QMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFAT-YDERRNGRLG  153 (234)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-HCTTSCSCCC
T ss_pred             CCChhheeeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheee-ecCCccCcCc
Confidence            9999999999999999999999999999875432   23355677889999999999999999999986 4555444455


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHcccCCCceeecchhhhHHHHHHHHHHHHHhhCCCCCCCC
Q 025548          174 IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLP  247 (251)
Q Consensus       174 ~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~~~~~~wvy~~~p~~Ga~la~~~~~~~~~~~~~~~~~  247 (251)
                      ..++.+|+.+.+.....++.||+++|||||++|++++++|+++|+||++|++|+++|+++|++++.|+.++.+|
T Consensus       154 ~~~l~ig~~v~~~~~~~~~~tG~~~NPAR~~gp~v~~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~~~~~~  227 (234)
T d1ymga1         154 SVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKSVSE  227 (234)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCCCCHHH
T ss_pred             ceeEeehHHHHHHHHHhcccccccccchhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHHHcCCCcchhh
Confidence            67999999999999999999999999999999999999999999999999999999999999998887766543
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure