Citrus Sinensis ID: 025580

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MMRQRIPVIAAKAGNFFLFFFLINSVTLFIFIHYSANPSNATRGQQSRLSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHccccccEEEEEccccccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHccccccccEEEEEccccccHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHEEHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHccccEEEEcccccccHccccccHHHHHHHHHHHcccccccEEEEEEEcccccccEEEcccccccEEccccccHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHHHccEEEEEcccHHccHHHcccccccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MMRQRIPVIAAKAGNFFLFFFLINSVTLFIFIHYsanpsnatrgqqsrlSVMDTFfishgsptlsideslparGFLQAWQAKvfsqrpnsILVISahwdtdfpsvnvvqrndtihdfygfpkqmydlkypapgapELAKRVKDLLKASGikhvnedrkrgldhgawvplmlmypeadipvcqlsvqmhhtGTYHYnigkalaplkeegvliigsgsathnLRALQFESSSISSWALEFDNWLKDALLEGR
Flexible Loop (DISEMBL)
MMRQRIPVIAAKAGNFFLFFFLINSVTLFIFIHYSANPSNATRGQQSRLSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASgikhvnedrkrglDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR
Low Complexity Region (SEG)
MMRQRIPVIAAKAGNFFLFFFLINSVTLFIFIHYSANPSNATRGQQSRLSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR
Disordered region (IsUnstruct)
*****IPVIAAKAGNFFLFFFLINSVTLFIFIHYSA************LSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDAL****
Disordered Region (DISOPRED)
****RIP*IAAKAGNFFLFFFLINSVTLFI***********************TFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEG*
Disordered Region (DISEMBL)
MMRQRIPVIAAKAGNFFLFFFLINSVTLFIFIHYSANPSNATRGQQSRLSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR
Disordered Region (DISPRO)
****RIPVIAAKAGNFFLFFFLINSVTLFIFIHYS*************LSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLE**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMRQRIPVIAAKAGNFFLFFFLINSVTLFIFIHYSANPSNATRGQQSRLSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	250	2.2.26 [Sep-21-2011]
Q949R4	269	4,5-DOPA dioxygenase extr	yes	no	0.8	0.743	0.719	3e-80
Q7XA48	271	4,5-DOPA dioxygenase extr	N/A	no	0.828	0.763	0.536	8e-61
P24197	262	Uncharacterized protein Y	N/A	no	0.756	0.721	0.390	4e-36
O74741	297	4,5-DOPA dioxygenase extr	yes	no	0.68	0.572	0.310	6e-16

>sp|Q949R4|DIOXL_ARATH 4,5-DOPA dioxygenase extradiol-like protein OS=Arabidopsis thaliana GN=At4g15093 PE=2 SV=1

 Score =  298 bits (763), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 146/203 (71%), Positives = 165/203 (81%), Gaps = 3/203 (1%)

Query: 51  VMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQR 110
           V  TFF+SHGSPTLSID+SL AR F ++W  KV  Q+P SILVISAHWDT FPSVN V R
Sbjct: 4   VNQTFFLSHGSPTLSIDDSLEARQFFKSWTQKVLPQKPKSILVISAHWDTKFPSVNTVLR 63

Query: 111 NDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLL-KASGIKHVNEDRKRGLDHGAWVPL 169
           N+TIHDF GFP  MY LKY APGA EL KRVK+LL K  G+K V+ED KRGLDHGAWVPL
Sbjct: 64  NNTIHDFSGFPDPMYKLKYEAPGAIELGKRVKELLMKEGGMKRVDEDTKRGLDHGAWVPL 123

Query: 170 MLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESS 229
           MLMYPEADIP+CQLSVQ +  G+YHYN+GKALA LK+EGVLIIGSGSATHNLR L F  +
Sbjct: 124 MLMYPEADIPICQLSVQSNQNGSYHYNMGKALASLKDEGVLIIGSGSATHNLRKLDFNIT 183

Query: 230 SIS--SWALEFDNWLKDALLEGR 250
             S   WALEFD+WL+D+LL+GR
Sbjct: 184 DGSPVPWALEFDHWLRDSLLQGR 206

May be involved in the metabolism of aromatic compounds.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 3EC: .EC: -EC: .EC: -

>sp|Q7XA48|DODA_PORGR 4,5-DOPA dioxygenase extradiol OS=Portulaca grandiflora GN=DODA PE=2 SV=1

 Score =  233 bits (595), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 111/207 (53%), Positives = 139/207 (67%)

Query: 44  GQQSRLSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFP 103
           G    +S  ++FF+SHG+P +  DES  AR FL  W+  VF  +P SILV+SAHW+TD P
Sbjct: 2   GVGKEVSFKESFFLSHGNPAMLADESFIARNFLLGWKKNVFPVKPKSILVVSAHWETDVP 61

Query: 104 SVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDH 163
            V+  Q  + I+DF   P  M+ +KYPAPG P+LAKRV++LL A G K    D +RG DH
Sbjct: 62  CVSAGQYPNVIYDFTEVPASMFQMKYPAPGCPKLAKRVQELLIAGGFKSAKLDEERGFDH 121

Query: 164 GAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRA 223
            +WVPL +M PEADIPVCQLSVQ     T+H+N+G+ALAPLK EGVL IGSG A H    
Sbjct: 122 SSWVPLSMMCPEADIPVCQLSVQPGLDATHHFNVGRALAPLKGEGVLFIGSGGAVHPSDD 181

Query: 224 LQFESSSISSWALEFDNWLKDALLEGR 250
                  ++ WA EFD WL+DALLEGR
Sbjct: 182 TPHWFDGVAPWAAEFDQWLEDALLEGR 208

Opens the cyclic ring of dihydroxy-phenylalanine (DOPA) between carbons 4 and 5, thus producing an unstable seco-DOPA that rearranges nonenzymatically to betalamic acid.

Portulaca grandiflora (taxid: 3583)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

EC: .

EC: -

>sp|P24197|YGID_ECOLI Uncharacterized protein YgiD OS=Escherichia coli (strain K12) GN=ygiD PE=1 SV=3

 Score =  151 bits (382), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 77/197 (39%), Positives = 120/197 (60%), Gaps = 8/197 (4%)

Query: 52  MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFS-QRPNSILVISAHWDTDFPSVNVVQR 110
           M   F+ HGSP   ++++L    + ++WQ    +  RP +I+V+SAHW T    V  ++ 
Sbjct: 6   MPALFLGHGSPMNVLEDNL----YTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMET 61

Query: 111 NDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLM 170
             TIHDF GFP+ +YD  YPAPG+P LA+R+ +LL    I    +    G DHG+W  L+
Sbjct: 62  PPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAP--IPVTLDKEAWGFDHGSWGVLI 119

Query: 171 LMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFES-S 229
            MYP+ADIP+ QLS+       +H+ +G+ LA L++EG++++ SG+  HNLR +++   S
Sbjct: 120 KMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDS 179

Query: 230 SISSWALEFDNWLKDAL 246
           S   WA  F+ ++K  L
Sbjct: 180 SPYPWATSFNEYVKANL 196

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

EC: .

EC: -

>sp|O74741|DIOXL_SCHPO 4,5-DOPA dioxygenase extradiol-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1709.16c PE=3 SV=2

 Score = 84.3 bits (207), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 23/193 (11%)

Query: 51  VMDTFFISHGSPTL-----SIDESLPARGFLQAWQAKVFSQ---------RPNSILVISA 96
           ++   +++HGSP L     S DE       L     +   Q         RP  I+V SA
Sbjct: 22  LIPALYLAHGSPFLMLPQSSDDEVFSNDSKLGGLHYQFLEQLGPFLLEKFRPKGIIVFSA 81

Query: 97  HWDTDFPSVNVVQRNDT---IHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHV 153
           H+++   SV V  R+D     +D+YGFP  +Y +K+ + G+  +A ++   LK   I   
Sbjct: 82  HYESR-GSVEVYSRDDENPLFYDYYGFPDYLYQIKFHSKGSKRIADQIISALKEYQIPAK 140

Query: 154 NEDRKRGLDHGAWVPLMLMYPEA-DIPVCQLSVQMHHTGTYH-YNIGKALAPLKEEGVLI 211
                RGLDHG +VP  +M+P+  +IP+ ++S  MH       Y +G+AL  L++E  LI
Sbjct: 141 TVSGDRGLDHGVFVPFKIMFPDGLNIPLIEVS--MHTLDPMQLYKVGQALQSLRKE-YLI 197

Query: 212 IGSGSATHNLRAL 224
           +  G   H    L
Sbjct: 198 VSGGLNIHTFEDL 210

May be involved in the metabolism of aromatic compounds.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
225441813	263	PREDICTED: 4,5-DOPA dioxygenase extradio	0.796	0.756	0.778	2e-88
255644965	266	unknown [Glycine max]	0.804	0.755	0.748	2e-86
356559963	266	PREDICTED: 4,5-DOPA dioxygenase extradio	0.804	0.755	0.748	2e-86
359480904	266	PREDICTED: 4,5-DOPA dioxygenase extradio	0.796	0.748	0.747	2e-84
357498833	266	4,5-DOPA dioxygenase extradiol-like prot	0.804	0.755	0.738	3e-84
388501808	267	unknown [Lotus japonicus]	0.808	0.756	0.738	3e-84
224080093	265	predicted protein [Populus trichocarpa]	0.808	0.762	0.707	3e-84
217075713	266	unknown [Medicago truncatula]	0.804	0.755	0.738	4e-84
388491364	266	unknown [Medicago truncatula]	0.804	0.755	0.738	4e-84
147844961	266	hypothetical protein VITISV_013290 [Viti	0.796	0.748	0.742	1e-83

>gi|225441813|ref|XP_002283881.1| PREDICTED: 4,5-DOPA dioxygenase extradiol-like protein [Vitis vinifera] gi|147811122|emb|CAN61349.1| hypothetical protein VITISV_021798 [Vitis vinifera] gi|297739669|emb|CBI29851.3| unnamed protein product [Vitis vinifera]

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 155/199 (77%), Positives = 173/199 (86%)

Query: 52  MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRN 111
           MDTF+ISHGSPTLSIDESLPAR FL++W+ KV  QRP SILVISAHW+T  P+VNVV +N
Sbjct: 1   MDTFYISHGSPTLSIDESLPARHFLKSWKEKVMGQRPTSILVISAHWETHEPTVNVVPQN 60

Query: 112 DTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLML 171
           DTI+DFYGFPK MY LKYPAPGAPELAKRVK+LL AS  K V ED+KRGLDHGAWVPLML
Sbjct: 61  DTIYDFYGFPKSMYKLKYPAPGAPELAKRVKELLMASNFKSVKEDKKRGLDHGAWVPLML 120

Query: 172 MYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESSSI 231
           MYPEADIPVCQLSVQ +  G+YHYN+G+ALAPL+EEGVLIIGSGSATHNLRAL   S S+
Sbjct: 121 MYPEADIPVCQLSVQTNRDGSYHYNMGRALAPLREEGVLIIGSGSATHNLRALNPNSESV 180

Query: 232 SSWALEFDNWLKDALLEGR 250
             WA EFD WLK+ALL+GR
Sbjct: 181 VPWAYEFDTWLKEALLDGR 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644965|gb|ACU22982.1| unknown [Glycine max]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/203 (74%), Positives = 176/203 (86%), Gaps = 2/203 (0%)

Query: 49  LSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVV 108
           +++ DTF+ISHGSPTLSIDES+ AR FLQ+W+  VF QRP+SILVIS HW+T  P+VNVV
Sbjct: 1   MALKDTFYISHGSPTLSIDESIQARKFLQSWKKDVFPQRPSSILVISGHWETAVPTVNVV 60

Query: 109 QR-NDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWV 167
              NDTI+DFYGFPKQMY LKYPAPGAP+LA+RVK+LLK SG  HV+ED KRGLDHGAWV
Sbjct: 61  DSINDTIYDFYGFPKQMYQLKYPAPGAPQLARRVKELLKKSGFSHVDEDTKRGLDHGAWV 120

Query: 168 PLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFE 227
           PL LMYPEADIPVCQ+S+Q    GTYHYN+GKALAPLK+EGVLI+GSGSA HNLRAL+  
Sbjct: 121 PLFLMYPEADIPVCQISIQSQQDGTYHYNLGKALAPLKDEGVLIMGSGSAVHNLRALE-P 179

Query: 228 SSSISSWALEFDNWLKDALLEGR 250
            S+++ WALEFDNWLKDALLEGR
Sbjct: 180 HSTVAPWALEFDNWLKDALLEGR 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559963|ref|XP_003548265.1| PREDICTED: 4,5-DOPA dioxygenase extradiol-like protein-like [Glycine max]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/203 (74%), Positives = 176/203 (86%), Gaps = 2/203 (0%)

Query: 49  LSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVV 108
           +++ DTF+ISHGSPTLSIDES+ AR FLQ+W+  VF QRP+SILVIS HW+T  P+VNVV
Sbjct: 1   MALKDTFYISHGSPTLSIDESIQARKFLQSWKKDVFPQRPSSILVISGHWETAVPTVNVV 60

Query: 109 QR-NDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWV 167
              NDTI+DFYGFPKQMY LKYPAPGAP+LA+RVK+LLK SG  HV+ED KRGLDHGAWV
Sbjct: 61  DSINDTIYDFYGFPKQMYQLKYPAPGAPQLARRVKELLKKSGFSHVDEDTKRGLDHGAWV 120

Query: 168 PLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFE 227
           PL LMYPEADIPVCQ+S+Q    GTYHYN+GKALAPLK+EGVLI+GSGSA HNLRAL+  
Sbjct: 121 PLFLMYPEADIPVCQISIQSQQDGTYHYNLGKALAPLKDEGVLIMGSGSAVHNLRALE-P 179

Query: 228 SSSISSWALEFDNWLKDALLEGR 250
            S+++ WALEFDNWLKDALLEGR
Sbjct: 180 HSTVAPWALEFDNWLKDALLEGR 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480904|ref|XP_002267696.2| PREDICTED: 4,5-DOPA dioxygenase extradiol-like protein-like [Vitis vinifera] gi|296084824|emb|CBI27706.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 151/202 (74%), Positives = 170/202 (84%), Gaps = 3/202 (1%)

Query: 52  MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRN 111
           MDTF+ISHGSPTLSIDESLPAR FL++W+ KV  Q P SILVIS HW+T  P+VNVV RN
Sbjct: 1   MDTFYISHGSPTLSIDESLPARHFLKSWREKVMGQPPTSILVISGHWETHEPTVNVVPRN 60

Query: 112 DTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLML 171
           DTI+DFYGFPK MY+ KYPAPGAPELAKRVK+LL AS  K VNED++RGLDHGAWVPLML
Sbjct: 61  DTIYDFYGFPKPMYEFKYPAPGAPELAKRVKELLMASDFKCVNEDKERGLDHGAWVPLML 120

Query: 172 MYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESSS- 230
           MYPEADIPVCQLSVQ +  G+YHYN+GKALAPL+EEGVLI GSGSATHNLR +   S S 
Sbjct: 121 MYPEADIPVCQLSVQTNRDGSYHYNMGKALAPLREEGVLIFGSGSATHNLRTINRNSDSK 180

Query: 231 --ISSWALEFDNWLKDALLEGR 250
             +  WA EFD WLK+ALL+GR
Sbjct: 181 AAVVPWAYEFDTWLKEALLDGR 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357498833|ref|XP_003619705.1| 4,5-DOPA dioxygenase extradiol-like protein [Medicago truncatula] gi|355494720|gb|AES75923.1| 4,5-DOPA dioxygenase extradiol-like protein [Medicago truncatula]

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 150/203 (73%), Positives = 171/203 (84%), Gaps = 2/203 (0%)

Query: 49  LSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVV 108
           +++ DTF+ISHGSPTLSID+S+ AR FLQ+W+  VF +RP SILVIS HWDT  P+VNV+
Sbjct: 1   MALKDTFYISHGSPTLSIDDSIEARKFLQSWKKDVFEERPKSILVISGHWDTTVPTVNVI 60

Query: 109 QR-NDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWV 167
           Q  NDTIHDFYGFPK MY LKYPAPGAPELAKRVK+LL  SG   V+ED+KRGLDHGAWV
Sbjct: 61  QTTNDTIHDFYGFPKPMYQLKYPAPGAPELAKRVKELLNKSGFDRVDEDKKRGLDHGAWV 120

Query: 168 PLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFE 227
           PLMLMYPEADIPVCQLSVQ    GTYHYN+GKALAPLK+EGVLI+GSGSA HNL  L   
Sbjct: 121 PLMLMYPEADIPVCQLSVQSDLDGTYHYNLGKALAPLKDEGVLIMGSGSAVHNLGTLN-P 179

Query: 228 SSSISSWALEFDNWLKDALLEGR 250
            + ++ WALEFDNWLKDALL+GR
Sbjct: 180 RAGVAPWALEFDNWLKDALLDGR 202

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501808|gb|AFK38970.1| unknown [Lotus japonicus]

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 150/203 (73%), Positives = 173/203 (85%), Gaps = 1/203 (0%)

Query: 49  LSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVV 108
           +++ DTF+ISHGSPTLSIDESL AR FLQ+W+ +VF  RP SILVIS HWDT  P+VNVV
Sbjct: 1   MALKDTFYISHGSPTLSIDESLVARKFLQSWKKEVFPPRPTSILVISGHWDTAVPTVNVV 60

Query: 109 QR-NDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWV 167
              NDTI+DFYGFPK MY LKYPAPGAP LAKRVK+LLK  G   V+ED+KRGLDHGAWV
Sbjct: 61  DSTNDTIYDFYGFPKPMYQLKYPAPGAPHLAKRVKELLKEGGFSRVDEDKKRGLDHGAWV 120

Query: 168 PLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFE 227
           PL+LMYPEADIPVCQLSVQ +  GT+HYNIGKALAPLK+EGVLI+GSGSA HNLRAL+  
Sbjct: 121 PLLLMYPEADIPVCQLSVQSNLDGTHHYNIGKALAPLKDEGVLIVGSGSAVHNLRALERH 180

Query: 228 SSSISSWALEFDNWLKDALLEGR 250
           ++  + WA+EFDNWLK+ALLEGR
Sbjct: 181 ATVAAPWAVEFDNWLKEALLEGR 203

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080093|ref|XP_002306014.1| predicted protein [Populus trichocarpa] gi|118485928|gb|ABK94809.1| unknown [Populus trichocarpa] gi|222848978|gb|EEE86525.1| predicted protein [Populus trichocarpa]

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 143/202 (70%), Positives = 175/202 (86%)

Query: 49  LSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVV 108
           +++M+TF++SHG+PTL+IDE++PAR F Q+WQ   + ++P+SILVISAHW+T  P+VNVV
Sbjct: 1   MALMETFYLSHGAPTLAIDETVPARKFFQSWQQSAYKEKPSSILVISAHWETAQPTVNVV 60

Query: 109 QRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVP 168
            RNDTI+DFYGFPK +Y +KY  PGAPELAKRVK+LL ASGI+HV+ED+KRGLDHGAWVP
Sbjct: 61  DRNDTIYDFYGFPKPLYQIKYTPPGAPELAKRVKELLLASGIEHVDEDKKRGLDHGAWVP 120

Query: 169 LMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFES 228
           LM MYPEADIPVCQLSVQ    GT+HYN+GKALAPL+EEGVLI+GSGSA HNL +   + 
Sbjct: 121 LMFMYPEADIPVCQLSVQSDRDGTHHYNMGKALAPLREEGVLILGSGSAVHNLGSRLPDG 180

Query: 229 SSISSWALEFDNWLKDALLEGR 250
           S + SWALEFDNWLKDAL+EGR
Sbjct: 181 SPVPSWALEFDNWLKDALIEGR 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075713|gb|ACJ86216.1| unknown [Medicago truncatula]

 Score =  317 bits (811), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 150/203 (73%), Positives = 171/203 (84%), Gaps = 2/203 (0%)

Query: 49  LSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVV 108
           +++ DTF+ISHGSPTLSID+S+ AR FLQ+W+  VF +RP SILVIS HWDT  P+VNV+
Sbjct: 1   MALKDTFYISHGSPTLSIDDSIEARKFLQSWKKDVFEERPKSILVISGHWDTTVPTVNVI 60

Query: 109 QR-NDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWV 167
           Q  NDTIHDFYGFPK MY LKYPAPGAPELAKRVK+LL  SG   V+ED+KRGLDHGAWV
Sbjct: 61  QTTNDTIHDFYGFPKPMYQLKYPAPGAPELAKRVKELLNKSGFDRVDEDKKRGLDHGAWV 120

Query: 168 PLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFE 227
           PLMLMYPEADIPVCQLSVQ    GTYHYN+GKALAPLK+EGVLI+GSGSA HNL  L   
Sbjct: 121 PLMLMYPEADIPVCQLSVQSDLDGTYHYNLGKALAPLKDEGVLIMGSGSAVHNLGTLN-P 179

Query: 228 SSSISSWALEFDNWLKDALLEGR 250
            + ++ WALEFDNWLKDALL+GR
Sbjct: 180 RAGVAPWALEFDNWLKDALLDGR 202

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491364|gb|AFK33748.1| unknown [Medicago truncatula]

 Score =  317 bits (811), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 150/203 (73%), Positives = 171/203 (84%), Gaps = 2/203 (0%)

Query: 49  LSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVV 108
           +++ DTF+ISHGSPTLSID+S+ AR FLQ+W+  VF +RP SILVIS HWDT  P+VNV+
Sbjct: 1   MALKDTFYISHGSPTLSIDDSIEARKFLQSWKKDVFEERPKSILVISGHWDTTVPTVNVI 60

Query: 109 QR-NDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWV 167
           Q  NDTIHDFYGFPK MY LKYPAPGAPELAKRVK+LL  SG   V+ED+KRGLDHGAWV
Sbjct: 61  QTTNDTIHDFYGFPKPMYQLKYPAPGAPELAKRVKELLNKSGFDRVDEDKKRGLDHGAWV 120

Query: 168 PLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFE 227
           PLMLMYPEADIPVCQLSVQ    GTYHYN+GKALAPLK+EGVLI+GSGSA HNL  L   
Sbjct: 121 PLMLMYPEADIPVCQLSVQSDLDGTYHYNLGKALAPLKDEGVLIMGSGSAVHNLGTLN-P 179

Query: 228 SSSISSWALEFDNWLKDALLEGR 250
            + ++ WALEFDNWLKDALL+GR
Sbjct: 180 RAGVAPWALEFDNWLKDALLDGR 202

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844961|emb|CAN83326.1| hypothetical protein VITISV_013290 [Vitis vinifera]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/202 (74%), Positives = 170/202 (84%), Gaps = 3/202 (1%)

Query: 52  MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRN 111
           MDTF+ISHGSPTLSIDESLPAR FL++W+ KV  Q P SILVIS HW+T  P+VNVV RN
Sbjct: 1   MDTFYISHGSPTLSIDESLPARHFLKSWREKVMGQPPTSILVISGHWETHEPTVNVVPRN 60

Query: 112 DTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLML 171
           DTI+DFYGFPK MY+ KYPAPGAPELAKRVK LL AS  K VNED++RGLDHGAWVPLML
Sbjct: 61  DTIYDFYGFPKPMYEXKYPAPGAPELAKRVKXLLXASDFKCVNEDKERGLDHGAWVPLML 120

Query: 172 MYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFES--- 228
           MYPEADIPVCQLSVQ +  G+YHYN+GKALAPL+EEGVLI GSGSATHNLR +   S   
Sbjct: 121 MYPEADIPVCQLSVQTNRDGSYHYNMGKALAPLREEGVLIFGSGSATHNLRTINRNSDXK 180

Query: 229 SSISSWALEFDNWLKDALLEGR 250
           +++  WA EFD WLK+ALL+GR
Sbjct: 181 AAVVPWAYEFDTWLKEALLDGR 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:505006468	269	LigB [Arabidopsis thaliana (ta	0.8	0.743	0.719	3.5e-75
UNIPROTKB|Q0C3K9	258	HNE_0958 "Extradiol-type ring-	0.764	0.740	0.520	2.6e-47
DICTYBASE|DDB_G0279843	271	DDB_G0279843 "Uncharacterized	0.788	0.726	0.415	1.6e-40
UNIPROTKB|Q885Q5	255	PSPTO_1776 "Uncharacterized pr	0.748	0.733	0.446	2.9e-39
UNIPROTKB|Q48FQ9	255	PSPPH_3633 "Extradiol-type rin	0.748	0.733	0.456	3.7e-39
UNIPROTKB|Q8EFR0	269	SO_1909 "Catalytic subunit of	0.78	0.724	0.422	3e-37
TIGR_CMR|SO_1909	269	SO_1909 "conserved hypothetica	0.78	0.724	0.422	3e-37
UNIPROTKB|P24197	262	ygiD "predicted dioxygenase" [	0.744	0.709	0.391	3.5e-36
TIGR_CMR|BA_1859	253	BA_1859 "oxidoreductase" [Baci	0.748	0.739	0.383	2.4e-35
UNIPROTKB|G4NGD8	341	MGG_04343 "Extradiol ring-clea	0.62	0.454	0.412	1.5e-26

TAIR|locus:505006468 LigB [Arabidopsis thaliana (taxid:3702)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 146/203 (71%), Positives = 165/203 (81%)

Query:    51 VMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQR 110
             V  TFF+SHGSPTLSID+SL AR F ++W  KV  Q+P SILVISAHWDT FPSVN V R
Sbjct:     4 VNQTFFLSHGSPTLSIDDSLEARQFFKSWTQKVLPQKPKSILVISAHWDTKFPSVNTVLR 63

Query:   111 NDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLL-KASGIKHVNEDRKRGLDHGAWVPL 169
             N+TIHDF GFP  MY LKY APGA EL KRVK+LL K  G+K V+ED KRGLDHGAWVPL
Sbjct:    64 NNTIHDFSGFPDPMYKLKYEAPGAIELGKRVKELLMKEGGMKRVDEDTKRGLDHGAWVPL 123

Query:   170 MLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESS 229
             MLMYPEADIP+CQLSVQ +  G+YHYN+GKALA LK+EGVLIIGSGSATHNLR L F  +
Sbjct:   124 MLMYPEADIPICQLSVQSNQNGSYHYNMGKALASLKDEGVLIIGSGSATHNLRKLDFNIT 183

Query:   230 SISS--WALEFDNWLKDALLEGR 250
               S   WALEFD+WL+D+LL+GR
Sbjct:   184 DGSPVPWALEFDHWLRDSLLQGR 206

GO:0005737 "cytoplasm" evidence=ISM

GO:0006725 "cellular aromatic compound metabolic process" evidence=IEA;ISS

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0016701 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q0C3K9 HNE_0958 "Extradiol-type ring-opening dioxygenase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 102/196 (52%), Positives = 126/196 (64%)

Query:    56 FISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIH 115
             F+SHGSPTL  D+ +PAR FL   Q      RP +ILV SAHW+T  P +       TIH
Sbjct:     6 FVSHGSPTLIFDD-VPARDFLT--QLGKTLPRPKAILVASAHWETIAPRITASPAPPTIH 62

Query:   116 DFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE 175
             D+ GFP+ MY  +YPAPG P LA R+K LL  +GI     D  RGLDHGAWVPL L +PE
Sbjct:    63 DYGGFPEVMYQQQYPAPGDPALAARIKALLDGAGIS-ATLDPARGLDHGAWVPLKLAWPE 121

Query:   176 ADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESSSIS-SW 234
             ADIPV QLS+Q H    +H  +G+AL PL EEGVLI+GSGS TH+LR++ +   +    W
Sbjct:   122 ADIPVLQLSLQTHLGPAHHLKLGEALRPLAEEGVLILGSGSLTHDLRSVSWRGPNAEPDW 181

Query:   235 ALEFDNWLKDALLEGR 250
                F +W+  AL EGR
Sbjct:   182 VKSFGDWVNTALAEGR 197

GO:0006725 "cellular aromatic compound metabolic process" evidence=ISS

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=ISS

DICTYBASE|DDB_G0279843 DDB_G0279843 "Uncharacterized protein ygiD" [Dictyostelium discoideum (taxid:44689)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 83/200 (41%), Positives = 124/200 (62%)

Query:    51 VMDTFFISHGSPTLSIDESLPARGFLQAWQAKVF-SQRPNSILVISAHWDTDFPSVNVVQ 109
             + ++ FISHG+P L +D S   R FL+      + S +P ++L+ISAHW+    ++    
Sbjct:     4 LFNSIFISHGAPNLILDHSDKTREFLKTLSKNHYGSVKPKAVLLISAHWEEREFTIQTKP 63

Query:   110 RNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPL 169
               D I+DF GF  +MY +KYPA  +PEL  RV +L   + I  + +D KRG DHGAW+P+
Sbjct:    64 EPDVIYDFGGFEPEMYRMKYPAKTSPELIDRVSELFAKAKIP-LGKDNKRGYDHGAWMPM 122

Query:   170 MLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESS 229
              L+YPEAD+P+ QLS++ +     H+ IG  L PL+EEG L++ SG + HNLRA+     
Sbjct:   123 KLVYPEADVPIVQLSIKENLNAAQHFQIGTILRPLREEGYLVLASGGSVHNLRAIFDPKY 182

Query:   230 SIS-SWALEFDNWLKDALLE 248
              +  SWA  F+ WL++ + E
Sbjct:   183 HLDPSWASNFEAWLQNTICE 202

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016701 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0006725 "cellular aromatic compound metabolic process" evidence=IEA

UNIPROTKB|Q885Q5 PSPTO_1776 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 88/197 (44%), Positives = 125/197 (63%)

Query:    54 TFFISHGSPTLSID--ESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRN 111
             + FISHGSPTL+++  ES PA   L A        RP +I+++SAHW++    VN   + 
Sbjct:     4 SLFISHGSPTLALEPGESGPALAQLAA-----SLPRPRAIVMVSAHWESHELIVNGNPQP 58

Query:   112 DTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLML 171
             +T HDF GF  +++ ++YPAPG PEL + + +LL A+G+     D +R  DHG WVPL L
Sbjct:    59 ETWHDFGGFAAELFAMQYPAPGLPELTRTIVELLTANGLP-ARIDSRRPFDHGVWVPLSL 117

Query:   172 MYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESSS- 230
             MYP+ADIPV Q+S+           +G+ALA L+E+GVL+IGSGS THNL  L + ++  
Sbjct:   118 MYPQADIPVVQVSLPSRQGPALQTQVGRALAGLREQGVLVIGSGSITHNLYDLDWSAAPD 177

Query:   231 -ISSWALEFDNWLKDAL 246
              +  WA EF +W+ D L
Sbjct:   178 RVEPWAAEFRDWIIDKL 194

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48FQ9 PSPPH_3633 "Extradiol-type ring-opening dioxygenase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 90/197 (45%), Positives = 124/197 (62%)

Query:    54 TFFISHGSPTLSID--ESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRN 111
             + FISHGSP L+++  ES PA   L    A +   RP++I+V+SAHW++   +VN     
Sbjct:     4 SLFISHGSPMLALEPGESGPA---LTRLAASL--PRPSAIVVVSAHWESHELTVNANPEP 58

Query:   112 DTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLML 171
             +T HDF GF  +++ ++YPAPG PEL++ + +LL ASG+     D +R  DHG WVPL L
Sbjct:    59 ETWHDFGGFAAELFAVQYPAPGLPELSRTIVELLAASGLP-ARIDSRRPFDHGVWVPLSL 117

Query:   172 MYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESS-- 229
             MYP ADIPV Q+S+           +G+ALA L+ +GVLIIGSGS THNLR L + +   
Sbjct:   118 MYPNADIPVVQVSLPSRQGPELQTRVGRALASLRAQGVLIIGSGSITHNLRDLDWNAGPG 177

Query:   230 SISSWALEFDNWLKDAL 246
             S   WA  F +W+ D L
Sbjct:   178 STEPWAATFRDWMIDKL 194

GO:0006725 "cellular aromatic compound metabolic process" evidence=ISS

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=ISS

UNIPROTKB|Q8EFR0 SO_1909 "Catalytic subunit of aromatic ring-opening dioxygenase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 85/201 (42%), Positives = 120/201 (59%)

Query:    49 LSVMDTFFISHGS---PTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSV 105
             +S+M   F+ HG    P L+       R FL +   ++    P +IL+I+AHW+    ++
Sbjct:     6 VSLMPVLFVPHGGGPLPLLNDANHHQLRDFLSSVGGQI--PMPKAILLITAHWEEAQVTL 63

Query:   106 NVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGA 165
             +       + D+YGFP + Y L YPAPG PELA+++  LLKASGI  V  D +R  DHG 
Sbjct:    64 SSHPHPGMLFDYYGFPPEAYKLSYPAPGNPELAEKIASLLKASGIA-VKLDNQRAFDHGT 122

Query:   166 WVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQ 225
             +VPL LMYPEA+IPV Q+S+  H     H  IG+ALA L+++GVLI+GSG + HN+RA  
Sbjct:   123 FVPLKLMYPEANIPVVQMSLVQHLDPRAHIAIGEALASLRQQGVLIVGSGMSFHNMRAFF 182

Query:   226 FESSSISSWALEFDNWLKDAL 246
                  +   + EFD+WL   L
Sbjct:   183 SSDPKVLPRSQEFDDWLTQVL 203

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1909 SO_1909 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 85/201 (42%), Positives = 120/201 (59%)

Query:    49 LSVMDTFFISHGS---PTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSV 105
             +S+M   F+ HG    P L+       R FL +   ++    P +IL+I+AHW+    ++
Sbjct:     6 VSLMPVLFVPHGGGPLPLLNDANHHQLRDFLSSVGGQI--PMPKAILLITAHWEEAQVTL 63

Query:   106 NVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGA 165
             +       + D+YGFP + Y L YPAPG PELA+++  LLKASGI  V  D +R  DHG 
Sbjct:    64 SSHPHPGMLFDYYGFPPEAYKLSYPAPGNPELAEKIASLLKASGIA-VKLDNQRAFDHGT 122

Query:   166 WVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQ 225
             +VPL LMYPEA+IPV Q+S+  H     H  IG+ALA L+++GVLI+GSG + HN+RA  
Sbjct:   123 FVPLKLMYPEANIPVVQMSLVQHLDPRAHIAIGEALASLRQQGVLIVGSGMSFHNMRAFF 182

Query:   226 FESSSISSWALEFDNWLKDAL 246
                  +   + EFD+WL   L
Sbjct:   183 SSDPKVLPRSQEFDDWLTQVL 203

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|P24197 ygiD "predicted dioxygenase" [Escherichia coli K-12 (taxid:83333)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 76/194 (39%), Positives = 120/194 (61%)

Query:    52 MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFS-QRPNSILVISAHWDTDFPSVNVVQR 110
             M   F+ HGSP   ++++L    + ++WQ    +  RP +I+V+SAHW T    V  ++ 
Sbjct:     6 MPALFLGHGSPMNVLEDNL----YTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMET 61

Query:   111 NDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLM 170
               TIHDF GFP+ +YD  YPAPG+P LA+R+ +LL  + I    +    G DHG+W  L+
Sbjct:    62 PPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELL--APIPVTLDKEAWGFDHGSWGVLI 119

Query:   171 LMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFES-S 229
              MYP+ADIP+ QLS+       +H+ +G+ LA L++EG++++ SG+  HNLR +++   S
Sbjct:   120 KMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDS 179

Query:   230 SISSWALEFDNWLK 243
             S   WA  F+ ++K
Sbjct:   180 SPYPWATSFNEYVK 193

GO:0016701 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0006725 "cellular aromatic compound metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

TIGR_CMR|BA_1859 BA_1859 "oxidoreductase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 74/193 (38%), Positives = 122/193 (63%)

Query:    51 VMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQR 110
             +M + F++HGSP L+I ++     FL+       + +P +I++ +AHW+++  +++    
Sbjct:     1 MMPSLFLAHGSPMLAIQDT-DYTSFLKTLGE---TYKPKAIVIFTAHWESEVLTISSTDN 56

Query:   111 N-DTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPL 169
               +TI+DF GFP ++Y++KY A G+  +A  ++   K  GI  V+ +  RGLDHG+W  L
Sbjct:    57 EYETIYDFGGFPPELYEIKYRAKGSSSIASMLETKFKNKGIP-VHHNMTRGLDHGSWTLL 115

Query:   170 MLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESS 229
               MYPEA+IPV Q+SV    +    + IG+AL  L +E +L+IGSG   HNLRAL++  +
Sbjct:   116 HRMYPEANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIGSGVTVHNLRALKWNQT 175

Query:   230 SISSWALEFDNWL 242
             +   WA+EFD+W+
Sbjct:   176 TPEQWAIEFDDWI 188

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|G4NGD8 MGG_04343 "Extradiol ring-cleavage dioxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 71/172 (41%), Positives = 98/172 (56%)

Query:    85 SQRPNSILVISAHW----DTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKR 140
             +QRP +I++++AHW       FP V    R + I+D+YGFP + Y  KYPAPGAP+LA R
Sbjct:    98 AQRPRAIILVTAHWVAKSPLSFPEVTSSARPELIYDYYGFPAESYQFKYPAPGAPDLAAR 157

Query:   141 VKDLLKASGIK-HVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGK 199
                +    G+   ++ DR  G DHG +VPL+L  PEAD+PV Q+SV        H+ +G+
Sbjct:   158 FAAVAADHGLSPRLHPDR--GWDHGVFVPLLLARPEADVPVLQVSVLGSDDARAHFRLGR 215

Query:   200 ALAPLK----EEG---VLIIGSGSAT-HNLRALQFESSSISSWALE--FDNW 241
             AL  L+    E G   V I+GSG A+ HNLR +     +I S A     D W
Sbjct:   216 ALGDLQRREAEAGNGPVAIVGSGFASFHNLRIMLSGDGTIESDAFRTGHDAW 267

GO:0005575 "cellular_component" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q949R4	DIOXL_ARATH	1, ., 1, 3, ., -, ., -	0.7192	0.8	0.7434	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.13.11.16	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025581001 SubName- Full=Putative uncharacterized protein (Chromosome chr8 scaffold_34, whole genome shotgun sequence); (263 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	250
cd07363	253	cd07363, 45_DOPA_Dioxygenase, The Class III extrad	4e-98
COG3384	268	COG3384, COG3384, Aromatic ring-opening dioxygenas	9e-70
pfam02900	258	pfam02900, LigB, Catalytic LigB subunit of aromati	1e-65
PRK10628	246	PRK10628, PRK10628, LigB family dioxygenase; Provi	2e-53
cd07320	260	cd07320, Extradiol_Dioxygenase_3B_like, Subunit B	2e-21
cd07362	272	cd07362, HPCD_like, Class III extradiol dioxygenas	3e-11
cd07951	256	cd07951, ED_3B_N_AMMECR1, The N-terminal domain, a	2e-05
cd07370	280	cd07370, HPCD, The Class III extradiol dioxygenase	2e-05
cd07367	268	cd07367, CarBb, CarBb is the B subunit of the Clas	4e-05
PRK13364	278	PRK13364, PRK13364, protocatechuate 4,5-dioxygenas	1e-04
cd07359	271	cd07359, PCA_45_Doxase_B_like, Subunit B of the Cl	0.001
cd07364	277	cd07364, PCA_45_Dioxygenase_B, Subunit B of the Cl	0.001
cd07371	268	cd07371, 2A5CPDO_AB, The alpha and beta subunits o	0.003
PRK03881	467	PRK03881, PRK03881, hypothetical protein; Provisio	0.003

>gnl|CDD|153375 cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine

 Score =  286 bits (734), Expect = 4e-98
 Identities = 112/197 (56%), Positives = 147/197 (74%), Gaps = 5/197 (2%)

Query: 54  TFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDT 113
             FISHGSP L+++++ PA  FL+    ++   +P +ILVISAHW+T  P+V    R +T
Sbjct: 2   VLFISHGSPMLALEDN-PATAFLRELGKELP--KPKAILVISAHWETRGPTVTASARPET 58

Query: 114 IHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMY 173
           I+DFYGFP ++Y+++YPAPG+PELA+RV +LLKA+GI     D +RGLDHGAWVPL LMY
Sbjct: 59  IYDFYGFPPELYEIQYPAPGSPELAERVAELLKAAGIP-ARLDPERGLDHGAWVPLKLMY 117

Query: 174 PEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFESSS-IS 232
           P+ADIPV QLS+        HY +G+ALAPL++EGVLIIGSGS+ HNLRAL++   +   
Sbjct: 118 PDADIPVVQLSLPASLDPAEHYALGRALAPLRDEGVLIIGSGSSVHNLRALRWGGPAPPP 177

Query: 233 SWALEFDNWLKDALLEG 249
            WALEFD+WLKDAL  G
Sbjct: 178 PWALEFDDWLKDALTAG 194

This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Length = 253

>gnl|CDD|225919 COG3384, COG3384, Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]

 Score =  214 bits (548), Expect = 9e-70
 Identities = 90/199 (45%), Positives = 129/199 (64%), Gaps = 4/199 (2%)

Query: 49  LSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDT-DFPSVNV 107
           +++M   F+SHGSP L+++++  A   L+    ++   RP++I+V SAHW+T     V  
Sbjct: 6   ITMMPALFLSHGSPMLALEDN-AATRGLRELGRELPELRPDTIIVFSAHWETRGAYHVTA 64

Query: 108 VQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWV 167
            +  +TIHDFYGFP ++YD+KYPAPG+PELA+R+ +LL   G+         GLDHG WV
Sbjct: 65  SEHPETIHDFYGFPDELYDVKYPAPGSPELAQRIVELLAKLGVPADAP--SWGLDHGTWV 122

Query: 168 PLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFE 227
           PL  M+P+ADIPV Q+S+    +   HY +G+AL  L+EEGVLI+ SGS  HNLR L++ 
Sbjct: 123 PLRYMFPDADIPVVQISIDCTLSPADHYELGRALRKLREEGVLILASGSLVHNLRLLKWA 182

Query: 228 SSSISSWALEFDNWLKDAL 246
                 WA EFD W+K  +
Sbjct: 183 GDGPYPWAREFDEWMKKNV 201

Length = 268

>gnl|CDD|217276 pfam02900, LigB, Catalytic LigB subunit of aromatic ring-opening dioxygenase

 Score =  204 bits (521), Expect = 1e-65
 Identities = 88/207 (42%), Positives = 118/207 (57%), Gaps = 19/207 (9%)

Query: 58  SHGSPTLSIDESLPARG------FLQAWQAKVFSQRPNSILVISAHWDTDFPS---VNVV 108
           SHG P L++++  P              +A++   RP+ I+V+S HW+TD      V   
Sbjct: 1   SHGPPMLALEDPPPDVYWEPVFDGFAEIRARLRELRPDVIVVVSPHWETDLLPTFCVGAA 60

Query: 109 QRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVP 168
           +  + IHDF GFP ++Y LKYPAPG PELA+ + +LL+A+GI     D +RGLDHG WVP
Sbjct: 61  ETPEGIHDFGGFPDELYRLKYPAPGDPELAEAIAELLRAAGI-DAAVDPRRGLDHGTWVP 119

Query: 169 LMLMYPEADIPVCQLSVQ--MHHTGTYHYNIGKALAPLKE---EGVLIIGSGSATHNLRA 223
           L LMYP  DIPV  +SV      +   HY +G+ALA  +E   E VL+IGSG  +HNLR 
Sbjct: 120 LSLMYPA-DIPVVPVSVNSVALLSPARHYELGRALAKAREKLDERVLVIGSGGLSHNLRV 178

Query: 224 LQFESSSISSWALEFDNWLKDALLEGR 250
            +      + W  EFD W  D L  G 
Sbjct: 179 PRL---GPTPWNEEFDRWFLDLLKSGD 202

Length = 258

>gnl|CDD|182598 PRK10628, PRK10628, LigB family dioxygenase; Provisional

 Score =  172 bits (438), Expect = 2e-53
 Identities = 68/162 (41%), Positives = 103/162 (63%), Gaps = 5/162 (3%)

Query: 87  RPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLK 146
           RP +I+V+SAHW T    V  ++   TIHDF GFP+ +YD  YPAPG+P LA+R+ +LL 
Sbjct: 22  RPKAIVVVSAHWYTRGTGVTAMETPRTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLA 81

Query: 147 ASGIKHVNEDRKR-GLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLK 205
                 V  D++  G DHG+W  L+ MYP+ADIP+ QLS+       +H+ +G+ LA L+
Sbjct: 82  PV---PVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSTKPAAWHFEMGRKLAALR 138

Query: 206 EEGVLIIGSGSATHNLRALQFESSSIS-SWALEFDNWLKDAL 246
           +EG++++ SG+  HNLR +++   S    WA  F+ ++K  L
Sbjct: 139 DEGIMLVASGNVVHNLRTVKWHGDSSPYPWAESFNQFVKANL 180

Length = 246

>gnl|CDD|153371 cd07320, Extradiol_Dioxygenase_3B_like, Subunit B of Class III Extradiol ring-cleavage dioxygenases

 Score = 89.9 bits (223), Expect = 2e-21
 Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 19/206 (9%)

Query: 56  FISHGSPT-LSIDE--SLPARGFLQAWQAKVFSQRPNSILVISAHW--DTDFPSVNVVQR 110
            I HG     + D   +      ++  + ++  +RP++I+V+S H        ++   + 
Sbjct: 4   IIPHGPALYAAEDTGKTRNDYQPIEISK-RIKEKRPDTIIVVSPHHLVIISATAITCAET 62

Query: 111 NDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASG-IKHVNEDRKRGLDHGAWVPL 169
            +T               Y   G P+LA  + + L     +  VNE    GLDHG  VPL
Sbjct: 63  FETADSGQW----GRRPVYDVKGDPDLAWEIAEELIKEIPVTIVNE--MDGLDHGTLVPL 116

Query: 170 MLMYPE-ADIPVCQLSVQ-MHHTGTYHYNIGKALAPLKE---EGVLIIGSGSATHNLRAL 224
             ++ +  D  V  LSV  +       +  GKA+    E     V ++ SG  +H L+  
Sbjct: 117 SYIFGDPWDFKVIPLSVGVLVPPFAKLFEFGKAIRAAVEPSDLRVHVVASGDLSHQLQGD 176

Query: 225 QFES-SSISSWALEFDNWLKDALLEG 249
           +  S S     A EFD ++ D L E 
Sbjct: 177 RPSSQSGYYPIAEEFDKYVIDNLEEL 202

Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class III enzymes. Enzymes belonging to this family include Protocatechuate 4,5-dioxygenase (LigAB), 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarB), 4,5-DOPA Dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase, and 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD). There are also some family members that do not show the typical dioxygenase activity. Length = 260

>gnl|CDD|153374 cd07362, HPCD_like, Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 10/161 (6%)

Query: 87  RPNSILVISAHW-DTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLL 145
           +P+ ILVIS HW  + F                  P  + D+ Y  PG PEL + + +  
Sbjct: 43  KPDVILVISCHWMSSSFHHFVDATPRHGGLTAVECPDLISDVPYDYPGDPELGRLLVEEG 102

Query: 146 KASG--IKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSV-----QMHHTGTYHYNIG 198
           + +G  +K VN+      D+G  VPL  + P  DIPV  +S       +  + T+   IG
Sbjct: 103 QEAGLRVKAVNDPTYI-WDYGTVVPLRYLNPNKDIPVVSISACWTAASLEESYTWGEVIG 161

Query: 199 KALAPLKEEGVLIIGSGSATHNLRALQFESSSISSWALEFD 239
           KAL    +  V  + SGS +HNL         ++ +    +
Sbjct: 162 KALLESDKRVVF-LASGSLSHNLVRGPEAEEGMNHYPSLAE 201

This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetramer composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and both belong to this family. Like all Class III extradiol dioxygenases, these enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Length = 272

>gnl|CDD|153388 cd07951, ED_3B_N_AMMECR1, The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 16/156 (10%)

Query: 76  LQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIH-DFYGFPKQMYDLKYPAPGA 134
            +A   ++ + RP++I+V+S H    F     +    T+  DF  F     ++ +     
Sbjct: 27  CEAAARRLAAARPDTIVVVSPH-APVFRDAFAISTGGTLRGDFSRF--GAPEVSFGVDLD 83

Query: 135 PELAKRVKDLLKASGIKHVNED-RKRGLDHGAWVPLMLM---YPEADIPVCQLSVQMHHT 190
            EL + +       G+       R   LDHG  VPL  +     +  +    LS     +
Sbjct: 84  LELVEEIAGEADKEGLPVGALGERIPELDHGTLVPLYFLRKAGSDGKLVRIGLSG---LS 140

Query: 191 GTYHYNIGKALA----PLKEEGVLIIGSGSATHNLR 222
               Y  G+ALA     L     L I SG  +H L 
Sbjct: 141 PEELYAFGRALAAAAEELGRRVAL-IASGDLSHRLT 175

This subfamily is composed of uncharacterized proteins containing an N-terminal domain with similarity to the catalytic B subunit of class III extradiol dioxygenases and a C-terminal AMMECR1-like domain. This model represents the N-terminal domain. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon, however, proteins in this subfamily do not contain a potential metal binding site and may not exhibit class III extradiol dioxygenase-like activity. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome. Length = 256

>gnl|CDD|153382 cd07370, HPCD, The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 120 FPKQMYDLKYPAPGAPELAKRVKDLLKASGIK-HVNEDRKRGLDHGAWVPLMLMYPEADI 178
            P  + D+ Y   G PELA  + +     G+K   +ED    L++G  VP+  M  +   
Sbjct: 79  LPHFIADMPYDYAGDPELAHLIAEEATEHGVKTLAHEDPSLPLEYGTLVPMRFMNEDDHF 138

Query: 179 PVCQLSVQMHHTGTYHYNIGKALAPLKEEG---VLIIGSGSATH 219
            V  ++V   H       +G+A+          V ++ SGS +H
Sbjct: 139 KVVSVAVWCTHDIEESRRLGEAIRRAIAASDRRVALLASGSLSH 182

3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Length = 280

>gnl|CDD|153379 cd07367, CarBb, CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 23/149 (15%)

Query: 87  RPNSILVISA----HWDTDFPSVNVVQRNDTIHDF--YGFPKQMYDLKYPAPGAPELAKR 140
           RP+ ++VIS+    + +       VV   D+   F     P++        PG  E A+ 
Sbjct: 42  RPDVLVVISSDHLFNINLSLQPPFVVGTADSYTPFGDMDIPRE------LFPGHREFARA 95

Query: 141 VKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH----TGTYHYN 196
                   G      +  R  DHG  VPL+ M P+ DIPV  L V ++     +    + 
Sbjct: 96  FVRQAAEDGFDLAQAEELR-PDHGVMVPLLFMGPKLDIPVVPLIVNINTDPAPSPRRCWA 154

Query: 197 IGKALAPL------KEEGVLIIGSGSATH 219
           +GK LA          E V +I +G  +H
Sbjct: 155 LGKVLAQYVEKRRPAGERVAVIAAGGLSH 183

CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl. Length = 268

>gnl|CDD|184003 PRK13364, PRK13364, protocatechuate 4,5-dioxygenase subunit beta; Provisional

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 24/103 (23%)

Query: 162 DHGAWVPLMLMYPEAD-----IPVCQLSVQM-----HHTGTYHYNIGKALAPL-KEEGVL 210
           DH   +PL L +P  D     +PVC  +VQ               IG+A+A    +E V+
Sbjct: 124 DHAFTLPLELFWPGRDYPVKVVPVCINTVQHPLPSARRCYKLGQAIGRAIASWPSDERVV 183

Query: 211 IIGSGSATHNL---RA--------LQFESSSISS--WALEFDN 240
           +IG+G  +H L   RA        LQ   S +S   W  ++ N
Sbjct: 184 VIGTGGLSHQLDGERAGFINKDFDLQCMDSLVSDPEWLTQYSN 226

Length = 278

>gnl|CDD|153372 cd07359, PCA_45_Doxase_B_like, Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 23/138 (16%)

Query: 126 DLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPV----- 180
             + P PG  +LA+ +   L   G         R LDHG  VPL  + P+ D+PV     
Sbjct: 85  IPRAPVPGDADLARHLLAGLVEDGFDVAFSYELR-LDHGITVPLHFLDPDNDVPVVPVLV 143

Query: 181 -CQLSVQMHHTGTYH--YNIGKALAP-----LKEEGVLIIGSGSATHNLRALQFESSSIS 232
            C          +    Y +G+AL         +  V ++G+G  +H           I+
Sbjct: 144 NCVTPPLP----SLRRCYALGRALRRAIESFPGDLRVAVLGTGGLSHWPGGP--RHGEIN 197

Query: 233 SWALEFDNWLKDALLEGR 250
               EFD    D L  G 
Sbjct: 198 E---EFDREFLDLLERGD 212

This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B. Length = 271

>gnl|CDD|153376 cd07364, PCA_45_Dioxygenase_B, Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 23/102 (22%)

Query: 162 DHGAWVPLMLMYPEAD------IPVCQLSVQM-HHTGTYHYNIGKAL--------APLKE 206
           DHG  VPL +MY + +      IP+C   VQ    TG   + +GKA+          LK 
Sbjct: 124 DHGLTVPLSIMYGQPEAWPCKVIPLCVNVVQYPQPTGKRCFALGKAIRRAVESYDEDLK- 182

Query: 207 EGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLE 248
             V I G+G  +H    LQ E + + +   EFDN   D L+ 
Sbjct: 183 --VAIWGTGGMSHQ---LQGERAGLIN--KEFDNRFLDKLIS 217

Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB. Length = 277

>gnl|CDD|153383 cd07371, 2A5CPDO_AB, The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 25/181 (13%)

Query: 56  FISHGSPTLSIDESLPARG-FLQAWQ---AKVFSQRPNSILVISAHWDTDFPSVN----V 107
           F+  G P   + E++P       A++   A + + RP+ +LV S  W      ++     
Sbjct: 4   FLVPGPPLPQLGENVPQWEPRSWAYERAGASLAASRPDVVLVYSTQW---IAVLDHHWLT 60

Query: 108 VQRNDTIH---DFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGI--KHVNEDRKRGLD 162
             R++  H   ++  F +  Y +        ELA+   +  + +G+  + +   R   +D
Sbjct: 61  RPRSEGRHVDENWPEFGRLDYSINVDV----ELAEACVEEGRKAGLVTRMMRYPRFP-ID 115

Query: 163 HGAWVPLMLMYPEADIPVCQLSV-QMHHTGTYHYNIGKALA-PLKEEG--VLIIGSGSAT 218
            G    L LM P  DIP   +S   ++ +G              ++ G  V ++GSG  +
Sbjct: 116 TGTITALTLMRPGTDIPPVVISANNLYLSGEETEGEMDLAGKATRDAGKRVAVLGSGGLS 175

Query: 219 H 219
           H
Sbjct: 176 H 176

This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. Length = 268

>gnl|CDD|235170 PRK03881, PRK03881, hypothetical protein; Provisional

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 29/165 (17%)

Query: 76  LQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIH-DF--YGFPKQMYDLKYPAP 132
           L+    ++  ++P++I++IS H    F     +     +  D   +G P+  +  K    
Sbjct: 34  LRELARRIAEKKPDTIIIISPH-GPVFRDAVAISDGPRLKGDLGRFGAPEVSFSFKN--- 89

Query: 133 GAPELAKRVKDLLKASGIKHVNEDRK--------RGLDHGAWVPLMLM------YPEADI 178
              EL + + +  K  GI  V  D +          LDHG  VPL  +      +    I
Sbjct: 90  -DLELVEEIAEEAKKEGIPVVEVDEELARKYEVSGELDHGTMVPLYFLRKAGSDFKLVHI 148

Query: 179 PVCQLSVQMHHTGTYHY--NIGKALAPLKEEGVLIIGSGSATHNL 221
               LS +      Y +   I +A   L  + VL I SG  +H L
Sbjct: 149 SYGGLSPEEL----YKFGMAIREAAEELGRKVVL-IASGDLSHRL 188

Length = 467

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
COG3384	268	Aromatic ring-opening dioxygenase, catalytic LigB	100.0
cd07363	253	45_DOPA_Dioxygenase The Class III extradiol dioxyg	100.0
PRK10628	246	LigB family dioxygenase; Provisional	100.0
PF02900	272	LigB: Catalytic LigB subunit of aromatic ring-open	100.0
TIGR02298	282	HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase	100.0
cd07373	271	2A5CPDO_A The alpha subunit of the Class III extra	100.0
cd07370	280	HPCD The Class III extradiol dioxygenase, homoprot	100.0
cd07362	272	HPCD_like Class III extradiol dioxygenases with si	100.0
cd07371	268	2A5CPDO_AB The alpha and beta subunits of the Clas	100.0
cd07952	256	ED_3B_like Uncharacterized class III extradiol dio	100.0
cd07367	268	CarBb CarBb is the B subunit of the Class III Extr	100.0
cd07320	260	Extradiol_Dioxygenase_3B_like Subunit B of Class I	100.0
cd07949	276	PCA_45_Doxase_B_like_1 The B subunit of unknown Cl	100.0
cd07372	294	2A5CPDO_B The beta subunit of the Class III extrad	100.0
cd07364	277	PCA_45_Dioxygenase_B Subunit B of the Class III ex	100.0
cd07359	271	PCA_45_Doxase_B_like Subunit B of the Class III Ex	100.0
cd07368	277	PhnC_Bs_like PhnC is a Class III Extradiol ring-cl	100.0
PRK13366	284	protocatechuate 4,5-dioxygenase subunit beta; Prov	100.0
PRK13358	269	protocatechuate 4,5-dioxygenase subunit beta; Prov	100.0
PRK03881	467	hypothetical protein; Provisional	100.0
cd07951	256	ED_3B_N_AMMECR1 The N-terminal domain, an extradio	100.0
PRK13364	278	protocatechuate 4,5-dioxygenase subunit beta; Prov	100.0
cd07950	277	Gallate_Doxase_N The N-terminal domain of the Clas	100.0
cd07369	329	PydA_Rs_like PydA is a Class III Extradiol ring-cl	100.0
PRK13372	444	pcmA protocatechuate 4,5-dioxygenase; Provisional	100.0
PRK13367	420	protocatechuate 4,5-dioxygenase; Provisional	100.0
PRK13365	279	protocatechuate 4,5-dioxygenase subunit beta; Prov	100.0
PRK13370	313	mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase	100.0
cd07365	310	MhpB_like Subunit B of the Class III Extradiol rin	100.0
cd07366	328	3MGA_Dioxygenase Subunit B of the Class III Extrad	100.0
PRK13363	335	protocatechuate 4,5-dioxygenase subunit beta; Prov	100.0
PRK13373	344	putative dioxygenase; Provisional	99.97
COG3885	261	Uncharacterized conserved protein [Function unknow	99.79
cd07361	266	MEMO_like Memo (mediator of ErbB2-driven cell moti	99.78
PRK00782	267	hypothetical protein; Provisional	99.6
COG1355	279	Predicted dioxygenase [General function prediction	98.5
PF01875	276	Memo: Memo-like protein; InterPro: IPR002737 This	98.39

>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]

Probab=100.00  E-value=4.6e-57  Score=401.57  Aligned_cols=194  Identities=47%  Similarity=0.881  Sum_probs=183.4

Q ss_pred             cceEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC-CeEEecCCCCccCCCCCCCcccccccC
Q 025580           51 VMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDF-PSVNVVQRNDTIHDFYGFPKQMYDLKY  129 (250)
Q Consensus        51 ~~p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~-~~I~~~~~~~~~~Df~gFp~~~y~~~y  129 (250)
                      .+|++|+|||||++.+ ++++++++++++|+++++.+||+|||+||||++.. ..|++.++++++|||+|||+++|+++|
T Consensus         8 ~~p~LflshgsP~~~~-~~n~~~~~l~~lG~~~~e~rp~tIiV~SaHw~t~~~~~v~~~e~~~~i~DfygFP~~ly~~~Y   86 (268)
T COG3384           8 MMPALFLSHGSPMLAL-EDNAATRGLRELGRELPELRPDTIIVFSAHWETRGAYHVTASEHPETIHDFYGFPDELYDVKY   86 (268)
T ss_pred             hccceeecCCCccccc-CccHHHHHHHHHHHhhhhcCCCEEEEEeceEEecCceeEEcccCcceeeccCCCCHHHHhccC
Confidence            6899999999999999 55789999999999999999999999999999998 889999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCe
Q 025580          130 PAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGV  209 (250)
Q Consensus       130 ~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derV  209 (250)
                      +++|+|+||++|++++.+.|++ .. ..+||+|||+|+||++|||++|+||||||+++.++++.||++||+|++++||.|
T Consensus        87 ~a~G~peLa~~i~~~l~~~~v~-a~-~~~~gLDHGtwvpL~~M~PdadipVV~iSi~~~~~~~~h~~lG~al~~lree~v  164 (268)
T COG3384          87 PAPGSPELAQRIVELLAKLGVP-AD-APSWGLDHGTWVPLRYMFPDADIPVVQISIDCTLSPADHYELGRALRKLREEGV  164 (268)
T ss_pred             CCCCCHHHHHHHHHHhcccCcc-cc-CCccCCCccceeeehhhCCccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhCCE
Confidence            9999999999999999999994 33 378999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHH
Q 025580          210 LIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALL  247 (250)
Q Consensus       210 lIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~  247 (250)
                      +|||||+++|||+...+.+....||+.+||+|+++.|+
T Consensus       165 lilaSGs~~H~l~~~~~~~~~~~~~a~~F~~~~~~~v~  202 (268)
T COG3384         165 LILASGSLVHNLRLLKWAGDGPYPWAREFDEWMKKNVV  202 (268)
T ss_pred             EEEecCcceeehhhhhhcCCCCChhHHHHHHHHHHHHH
Confidence            99999999999999988655567999999999999996

>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine

Probab=100.00  E-value=1.7e-55  Score=394.14  Aligned_cols=194  Identities=58%  Similarity=1.047  Sum_probs=181.4

Q ss_pred             eEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccCCCC
Q 025580           53 DTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAP  132 (250)
Q Consensus        53 p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~~  132 (250)
                      |++|+|||+|++.+++. ...++|+++++++.  +||+||||||||++....|++++.++++|||+|||+++|+++|+++
T Consensus         1 p~~fi~HG~p~~~~~~~-~~~~~l~~~~~~l~--~p~~IiviSaHw~~~~~~i~~~~~~~~~~df~gfp~~~y~~~y~~~   77 (253)
T cd07363           1 PVLFISHGSPMLALEDN-PATAFLRELGKELP--KPKAILVISAHWETRGPTVTASARPETIYDFYGFPPELYEIQYPAP   77 (253)
T ss_pred             CeEEeCCCCcccccCCC-hHHHHHHHHHHhcC--CCCEEEEEcCCcccCCCeEEecCCCCceeCCCCCCHHHeeccCCCC
Confidence            78999999999998554 44589999999985  9999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeEEE
Q 025580          133 GAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLII  212 (250)
Q Consensus       133 G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVlII  212 (250)
                      ||++||++|.+.++++||+ +....++++|||+||||++|+|+.++||||||+|...++++||+||++|++++++||+||
T Consensus        78 g~~eLa~~i~~~l~~~gi~-~~~~~~~~lDHG~~vPL~~~~p~~~iPvV~isi~~~~~~~~~~~lG~aL~~l~~~~v~ii  156 (253)
T cd07363          78 GSPELAERVAELLKAAGIP-ARLDPERGLDHGAWVPLKLMYPDADIPVVQLSLPASLDPAEHYALGRALAPLRDEGVLII  156 (253)
T ss_pred             CCHHHHHHHHHHHHhcCCC-ccccCCcCCcccHHHHHHHHcCCCCCcEEEEEecCCCCHHHHHHHHHHHHhhhhCCEEEE
Confidence            9999999999999999995 777778999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCcccCcccccCC-CCCChhHHHHHHHHHHHHHcCC
Q 025580          213 GSGSATHNLRALQFES-SSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       213 gSG~lSHnL~~~~~~~-~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      |||++||||...+++. .++.+|+++||+|+++++++||
T Consensus       157 ~SG~lsH~l~~~~~~~~~~~~~~~~~Fd~~i~~~l~~~d  195 (253)
T cd07363         157 GSGSSVHNLRALRWGGPAPPPPWALEFDDWLKDALTAGD  195 (253)
T ss_pred             ecCcceechhhhccccCCCCchHHHHHHHHHHHHHHcCC
Confidence            9999999999888742 3578999999999999999986

This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca

>PRK10628 LigB family dioxygenase; Provisional

Probab=100.00  E-value=3.3e-53  Score=377.45  Aligned_cols=181  Identities=38%  Similarity=0.726  Sum_probs=163.6

Q ss_pred             CCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccCCCCCCHHHHHHHHH
Q 025580           64 LSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKD  143 (250)
Q Consensus        64 l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~  143 (250)
                      +.+ ++++++++|+++++.+  .+|++|||||+||++....|+..+.++++|||+|||+++|+++|++||+|+||++|.+
T Consensus         2 ~~l-e~~~~~~~l~~lg~~l--~~PkaIlvvSAHW~t~~~~v~~~~~p~~i~DF~GFP~elY~~~Ypa~G~p~LA~~i~~   78 (246)
T PRK10628          2 NVL-EDNLYTRAWRTLGETL--PRPKAIVVVSAHWYTRGTGVTAMETPRTIHDFGGFPQALYDTHYPAPGSPALAQRLVE   78 (246)
T ss_pred             ccc-cccHHHHHHHHHHHhC--CCCCEEEEEcCCcCCCCCcEEecCCCCcccCCCCCCHHHeeecCCCCCCHHHHHHHHH
Confidence            445 4467889999999986  5899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeEEEEecCCcccCcc
Q 025580          144 LLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRA  223 (250)
Q Consensus       144 ~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVlIIgSG~lSHnL~~  223 (250)
                      .|++.|+.  ..+.+||+|||+||||++|||++||||||+|++..++++.||+||++|++|||++|+|||||+++|||+.
T Consensus        79 ll~~~~~~--~~~~~rGlDHG~WvpL~~m~P~adIPVvqlSl~~~~~~~~h~~lG~aL~~LR~~gvLIigSG~~~HNL~~  156 (246)
T PRK10628         79 LLAPVPVT--LDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSTKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRT  156 (246)
T ss_pred             HhhhcCcc--cCCcccCcccchhhhhhhhCCCCCCCeEEeecCCCCCHHHHHHHHHHHHhhccCCEEEEecCccccchhh
Confidence            99998872  2334599999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cccC-CCCCChhHHHHHHHHHHHHHcC
Q 025580          224 LQFE-SSSISSWALEFDNWLKDALLEG  249 (250)
Q Consensus       224 ~~~~-~~~~~~~a~eFD~~v~~~i~~G  249 (250)
                      ..+. +.+..+|+.+||+|+.++|+++
T Consensus       157 ~~~~~~~~~~~wa~~F~~wl~~~l~~~  183 (246)
T PRK10628        157 VKWHGDSSPYPWAESFNQFVKANLTWQ  183 (246)
T ss_pred             hcccCCCCCchHHHHHHHHHHHHHhcC
Confidence            6542 2335689999999999999843

>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms

Probab=100.00  E-value=3.3e-50  Score=361.58  Aligned_cols=196  Identities=41%  Similarity=0.800  Sum_probs=151.9

Q ss_pred             eEEEEcCCCCCCCCCCC------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-------CCeEEecCCCCccCCCCC
Q 025580           53 DTFFISHGSPTLSIDES------LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-------FPSVNVVQRNDTIHDFYG  119 (250)
Q Consensus        53 p~~fisHGsP~l~~~~~------~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-------~~~I~~~~~~~~~~Df~g  119 (250)
                      |++|+|||+|++..++.      +.+.++++++++++++.+||+||||||||++.       .++|..++.++.+|||+|
T Consensus         1 p~~~~sHgp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pd~ivvis~h~~~~f~~~~~p~~~v~~~~~~~~~~d~~g   80 (272)
T PF02900_consen    1 PAYFISHGPPMLPLEDPEPEGKWQRTFAALQELGRRLREAKPDVIVVISPHWFTNFFEDNMPAFAVGSGEEPEGIYDFYG   80 (272)
T ss_dssp             -EEEEE--HHHHHCCH-CCCCCCHHHHHHHHHHHHHCHSTS-SEEEEEEEEECCS--TTCEECBEEE-SSEE-B-BS---
T ss_pred             CEEEEeCCCccccccCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCcchhhcccCCccEEEecCCCccccccccc
Confidence            78999998877665332      24678999999999999999999999999992       235777777899999999


Q ss_pred             CCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCC----CCCHHHHH
Q 025580          120 FPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM----HHTGTYHY  195 (250)
Q Consensus       120 Fp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~----~~~~~~~~  195 (250)
                      ||++.|+++|+++||++||++|.+.+.++||+ ++.+.++++|||+||||++|+|+.++||||||+|.    ..++++||
T Consensus        81 fp~~~~~~~~~~~g~~~la~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~Pvv~is~~~~~~p~~~~~~~~  159 (272)
T PF02900_consen   81 FPPELYEIKYPAPGDPELAERIAEHLRKAGFD-VAASPERGLDHGVWVPLYFLFPDADIPVVPISINSFAPPSPSPERHY  159 (272)
T ss_dssp             --SSSBSSS--EEB-HHHHHHHHHHHHHTTS--EEECSS--B-HHHHHHHHHHCTT-SSEEEEEEEETSSS-TS-HHHHH
T ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHhcCCC-EEeccCcCCccccceeeeecccccCcceeeeEeecccccCCCHHHHH
Confidence            99999999999999999999999999999995 66789999999999999999999999999999998    78999999


Q ss_pred             HHHHHhcccc---cCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          196 NIGKALAPLK---EEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       196 ~LG~aL~~l~---derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      +||++|++++   ++||+|||||++||||...++++... +|+++||+|+++++++||
T Consensus       160 ~lG~aL~~~~~~~~~rv~vi~SG~lsH~l~~~~~~~~~~-~~~~~fD~~i~~~l~~gd  216 (272)
T PF02900_consen  160 RLGRALRKARESSDERVAVIASGGLSHNLRDPRPGGYDP-PWAEEFDEWILDALESGD  216 (272)
T ss_dssp             HHHHHHHHHHHTSGGCEEEEEEE-SS--TTSTTTTS----CHHHHHHHHHHCCCCH-H
T ss_pred             HHHHHHHHHHHhcCCCEEEEEeCCcccCCCcccccchhh-HhHHHHHHHHHHHHHcCC
Confidence            9999999998   89999999999999999999855321 599999999999998875

Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.

>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase

Probab=100.00  E-value=2.3e-47  Score=346.72  Aligned_cols=201  Identities=20%  Similarity=0.269  Sum_probs=172.9

Q ss_pred             ccccceEEEEcCCCCCCCCCCC--------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-CCeEEecCCCCccCCCC
Q 025580           48 RLSVMDTFFISHGSPTLSIDES--------LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-FPSVNVVQRNDTIHDFY  118 (250)
Q Consensus        48 ~~~~~p~~fisHGsP~l~~~~~--------~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-~~~I~~~~~~~~~~Df~  118 (250)
                      |.++.-+.++|| .|++++++.        .++.++|+++++++++.+||+||||||||++. .+.|+..+.+++.|||+
T Consensus         1 Mg~iv~a~~~~H-~P~i~i~e~~g~~~~~~~~~~~al~~l~~~l~~~~Pd~IVViS~H~~~~~~~~i~~~~~~~g~~~~~   79 (282)
T TIGR02298         1 MGKLALAAKITH-VPSMYLSELPGPLRGCRQGAIDGHKEISRRAKEMGVDTIVVFDTHWLVNSGYHINCNDQFSGSYTSH   79 (282)
T ss_pred             CcceEEEEEecc-CCcEEECCCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEECCCCCcCCCeEEecCCCCcceecCC
Confidence            444556677788 455544332        36778999999999999999999999999997 67888888889999999


Q ss_pred             CCCcccccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCcccchhhhhhhhcCCCCCCEEEeecC-CCCCHHHHH
Q 025580          119 GFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVN--EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQ-MHHTGTYHY  195 (250)
Q Consensus       119 gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~--~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~-~~~~~~~~~  195 (250)
                      |||+++|+++|+++||++||++|.+.+.++|++ +.  .+.++++|||+||||+||+|+.++||||||+| ..+++++||
T Consensus        80 g~p~~l~~~~y~~~gd~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~is~~~~~~~~~~~~  158 (282)
T TIGR02298        80 ELPHFIQDLRYDYPGNPALGQLIADEAQEHGVK-TLAHQVPSLGLEYGTLVPMRYMNEDGHFKVVSIAAWCTVHDIEESR  158 (282)
T ss_pred             CCChhhhCceeeCCCCHHHHHHHHHHHHHCCCc-eeeccCCCCCCCeehHhHHHHhCCCCCCcEEEEeecCCCCCHHHHH
Confidence            999999999999999999999999999999995 54  46789999999999999999999999999997 557999999


Q ss_pred             HHHHHhccc---ccCCeEEEEecCCcccCccccc-CCCCCChhHHHH----HHHHHHHHHcCC
Q 025580          196 NIGKALAPL---KEEGVLIIGSGSATHNLRALQF-ESSSISSWALEF----DNWLKDALLEGR  250 (250)
Q Consensus       196 ~LG~aL~~l---~derVlIIgSG~lSHnL~~~~~-~~~~~~~~a~eF----D~~v~~~i~~Gd  250 (250)
                      +||++|+++   +++||+|||||++||||....+ ..+++.+|+.+|    |+++++.+++||
T Consensus       159 ~lG~al~~~i~~~~~rV~iIaSG~lSH~L~~~~~~~p~g~~~~a~~f~~~~D~~v~~~l~~gd  221 (282)
T TIGR02298       159 ALGEAIRKAIEQSDGRVAVLASGSLSHRFWDNKDLAPEGMTTIASEFNRQVDLRVLELWRERD  221 (282)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecccceecCcccCCCcccCCchhhHHHHHHHHHHHHHHHcCC
Confidence            999999999   7899999999999999987752 113367897775    888888998887

This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.

>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol

Probab=100.00  E-value=7.4e-46  Score=334.92  Aligned_cols=189  Identities=18%  Similarity=0.259  Sum_probs=162.0

Q ss_pred             EEEEcCCCCCCCCCCC----hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCC--CCCeEEec-----CCCCccCCCCCCCc
Q 025580           54 TFFISHGSPTLSIDES----LPARGFLQAWQAKVFSQRPNSILVISAHWDT--DFPSVNVV-----QRNDTIHDFYGFPK  122 (250)
Q Consensus        54 ~~fisHGsP~l~~~~~----~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~--~~~~I~~~-----~~~~~~~Df~gFp~  122 (250)
                      ++|++||+|++.+.+.    ..+.++|+++++++++.+||+||||||||++  ..++|+..     ..++++|||+|||.
T Consensus         5 ~~f~~hh~P~~~~~~~~~~~~~~~~a~~~lg~~l~~~~Pd~IvviS~Hw~~~~~~~~v~~~~~~g~~~~~~~~df~g~p~   84 (271)
T cd07373           5 SAFLVPGSPLPQLRPDVPSWGQFAAATRQAGKALAASRPDVVLVYSTQWFAVLDQQWLTRPRSEGVHVDENWHEFGELPY   84 (271)
T ss_pred             EEEecCCCCccccCCCcccHHHHHHHHHHHHHHHHHhCCCEEEEECCCCcccccceeEeeccccccccccChhHhcCccc
Confidence            5799999998777554    1678999999999988899999999999998  45666542     23568999999984


Q ss_pred             ccccccCCCCCCHHHHHHHHHHHHhCCCCccc-ccCC-CCcccchhhhhhhh-cCCCCCCEEEeecCCCCCHHHHHHHHH
Q 025580          123 QMYDLKYPAPGAPELAKRVKDLLKASGIKHVN-EDRK-RGLDHGAWVPLMLM-YPEADIPVCQLSVQMHHTGTYHYNIGK  199 (250)
Q Consensus       123 ~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~-~~~~-~~lDHG~~vPL~~l-~p~~diPVV~vS~~~~~~~~~~~~LG~  199 (250)
                             +++|+++||++|.+.++++|++ +. .+.+ +++|||+||||+|| +|+.++||||+|++..+++++||+||+
T Consensus        85 -------~~~g~~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~~s~~~~~~~~~~~~lG~  156 (271)
T cd07373          85 -------DIRSDTALAEACVTACPEHGVH-ARGVDYDGFPIDTGTITACTLMGIGTEALPLVVASNNLYHSGEITEKLGA  156 (271)
T ss_pred             -------ccCCCHHHHHHHHHHHHHCCCc-EEEecCCCCCCcchhHHHHHHHcccCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence                   6899999999999999999995 65 5554 59999999999999 778999999999998899999999999


Q ss_pred             Hhcc-ccc--CCeEEEEecCCcccCccccc--C-CCCCChhHHHHHHHHHHHHHcCC
Q 025580          200 ALAP-LKE--EGVLIIGSGSATHNLRALQF--E-SSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       200 aL~~-l~d--erVlIIgSG~lSHnL~~~~~--~-~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      +|++ +++  +||+|||||+|||||...++  . .+++.||+++||+|+++.+++||
T Consensus       157 al~~~l~~~~~rV~iIgSG~lSH~L~~~~~~~~~~~~~~p~~~~FD~~~~~~l~~gd  213 (271)
T cd07373         157 IAADAAKDQNKRVAVVGVGGLSGSLFREEIDPREDHIANEEDDKWNRRVLKLIEAGD  213 (271)
T ss_pred             HHHHHHHHcCCeEEEEEecccccCcCcCCCcCCCCCccCccHHHHHHHHHHHHHcCC
Confidence            9996 676  99999999999999976542  1 23478999999999999999986

2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.

>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate

Probab=100.00  E-value=2.1e-45  Score=333.17  Aligned_cols=197  Identities=21%  Similarity=0.272  Sum_probs=173.9

Q ss_pred             ceEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-CCeEEecCCCCccCCCCCCCcccccccCC
Q 025580           52 MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTD-FPSVNVVQRNDTIHDFYGFPKQMYDLKYP  130 (250)
Q Consensus        52 ~p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-~~~I~~~~~~~~~~Df~gFp~~~y~~~y~  130 (250)
                      .|++|+|||.++... ...++.++|+++++++.+.+||+||||||||++. .+.|+..+.+++.|||+|||.++|+++|+
T Consensus        11 ~P~i~i~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~Pd~ivviS~H~~~~~~~~i~~~~~~~g~~~~~g~p~~~~~i~~~   89 (280)
T cd07370          11 VPTMMLSEQPGPNKG-CRQAAIDGLKEIGRRARELGVDTIVVFDTHWLVNAGYHINANARFSGLFTSNELPHFIADMPYD   89 (280)
T ss_pred             CCeEEecCCCCCccc-hHHHHHHHHHHHHHHhhHcCCCEEEEECCCcccccceeEeccCCCCceecCCCCCchhcCCCCC
Confidence            477888888654432 2246789999999999888999999999999986 57888888888999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCccc--ccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhccc---c
Q 025580          131 APGAPELAKRVKDLLKASGIKHVN--EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPL---K  205 (250)
Q Consensus       131 ~~G~~~LA~~i~~~l~~~Gid~~~--~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l---~  205 (250)
                      ++||++||++|.+.+.+.|++ +.  .+.++++|||+||||++|+|+.++||||+|+|...+++++++||++|+++   +
T Consensus        90 ~~gd~ela~~i~~~~~~~g~~-~~~~~~~~~~lDhg~~vPL~~l~p~~~~pvV~is~~~~~~~~~~~~lG~al~~~~~~~  168 (280)
T cd07370          90 YAGDPELAHLIAEEATEHGVK-TLAHEDPSLPLEYGTLVPMRFMNEDDHFKVVSVAVWCTHDIEESRRLGEAIRRAIAAS  168 (280)
T ss_pred             CCCCHHHHHHHHHHHHHCCCC-eeeecCCCCCCCeeHhhHHHHhCCCCCceEEEEeecCCCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999995 44  56789999999999999999999999999999999999999999999998   5


Q ss_pred             cCCeEEEEecCCcccCcccccCCC------CCChhHHHHHHHHHHHHHcCC
Q 025580          206 EEGVLIIGSGSATHNLRALQFESS------SISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       206 derVlIIgSG~lSHnL~~~~~~~~------~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      ++||+|||||+|||++....+.++      ...||+++||+|++++|++||
T Consensus       169 ~~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~~p~~~~fD~~~~~~i~~gD  219 (280)
T cd07370         169 DRRVALLASGSLSHRFWPNRELEAHEDPFTISSPFNRQVDLRVLELWKEGR  219 (280)
T ss_pred             CCCEEEEEeccccccCccCCCccccccccccCChhHHHHHHHHHHHHHcCC
Confidence            679999999999999977666332      146899999999999999987

3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.

>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate

Probab=100.00  E-value=5.5e-45  Score=329.55  Aligned_cols=194  Identities=24%  Similarity=0.322  Sum_probs=162.6

Q ss_pred             EEEEcCCCCCCCCCCC-----h----hHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC-eEEecCCCCccCCCCCCCcc
Q 025580           54 TFFISHGSPTLSIDES-----L----PARGFLQAWQAKVFSQRPNSILVISAHWDTDFP-SVNVVQRNDTIHDFYGFPKQ  123 (250)
Q Consensus        54 ~~fisHGsP~l~~~~~-----~----~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~-~I~~~~~~~~~~Df~gFp~~  123 (250)
                      ++++||  ||+++++.     .    .+.++|+++++++++.+||+||||||||++... .+.........+|++|||+.
T Consensus         3 a~~~pH--~P~i~~~~~~~~~~~~~~~t~~a~~~l~~~l~~~~Pd~IvvvS~Hw~~~~~~~~~~~~~~~~~~~~~g~p~~   80 (272)
T cd07362           3 AMLAPH--VPSMCHEENPPENQGCLVGAIKGMKEIRKRIEELKPDVILVISCHWMSSSFHHFVDATPRHGGLTAVECPDL   80 (272)
T ss_pred             ccccCC--CCEeecCCCCCchhhhHHHHHHHHHHHHHHhhHcCCCEEEEECCCcccccceeeeccCccccccccCcCCch
Confidence            478899  66555442     1    256889999999988999999999999999863 23333333346899999999


Q ss_pred             cccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCcccchhhhhhhhcCCCCCCEEEeecCC-CCCHHHHHHHHHH
Q 025580          124 MYDLKYPAPGAPELAKRVKDLLKASGIKHVN--EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM-HHTGTYHYNIGKA  200 (250)
Q Consensus       124 ~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~--~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~-~~~~~~~~~LG~a  200 (250)
                      +|+++|+++||++||++|.+.++++||+ ++  .+.++++|||+||||++|+|+.++||||+|+|. .+++++||+||++
T Consensus        81 ~~~~~y~~~g~~~LA~~i~~~l~~~Gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~vs~~~~~~~~~~~~~lG~a  159 (272)
T cd07362          81 ISDVPYDYPGDPELGRLLVEEGQEAGLR-VKAVNDPTYIWDYGTVVPLRYLNPNKDIPVVSISACWTAASLEESYTWGEV  159 (272)
T ss_pred             hhccccCCCCCHHHHHHHHHHHHHcCCc-eeeccCCCCCCCcchHHHHHHhCCCCCCcEEEEeccCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999995 65  355899999999999999999999999999998 7899999999965


Q ss_pred             hcccc---cCCeEEEEecCCcccCcccccC--C-CCC-ChhHHHHHHHHHHHHHcCC
Q 025580          201 LAPLK---EEGVLIIGSGSATHNLRALQFE--S-SSI-SSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       201 L~~l~---derVlIIgSG~lSHnL~~~~~~--~-~~~-~~~a~eFD~~v~~~i~~Gd  250 (250)
                      |+++.   ++||+|||||++||||+...+.  + .++ .+|+++||+|+++.+++||
T Consensus       160 i~~al~~~~~rv~ii~SG~lsH~l~~~~~~~~g~~~~~~~~~~~fD~~i~~~l~~gd  216 (272)
T cd07362         160 IGKALLESDKRVVFLASGSLSHNLVRGPEAEEGMNHYPSLAEQQMDRRFIQLLREGQ  216 (272)
T ss_pred             HHHHHHhhCCCEEEEEeCcccccCCCCCCCcccccCCCChhHHHHHHHHHHHHHcCC
Confidence            55431   7999999999999999887662  1 233 5899999999999999987

This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame

>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol

Probab=100.00  E-value=1.2e-44  Score=326.49  Aligned_cols=194  Identities=20%  Similarity=0.267  Sum_probs=164.7

Q ss_pred             EEEcCCCCCCCCCCC----hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEec-CCCCccCCCCCCCcccccccC
Q 025580           55 FFISHGSPTLSIDES----LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVV-QRNDTIHDFYGFPKQMYDLKY  129 (250)
Q Consensus        55 ~fisHGsP~l~~~~~----~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~-~~~~~~~Df~gFp~~~y~~~y  129 (250)
                      .|++||+|++.+.++    ..+.++|+++++++.+.+||+||||||||++..+.++++ +..+..++..+|+ +.|+++|
T Consensus         3 ~~l~~H~P~~~~~~~~~~~~~~~~al~~l~~~l~~~~Pd~IvviS~Hw~~~~~~~~i~~~~~~g~~~~~~~~-~~~~~~y   81 (268)
T cd07371           3 AFLVPGPPLPQLGENVPQWEPRSWAYERAGASLAASRPDVVLVYSTQWIAVLDHHWLTRPRSEGRHVDENWP-EFGRLDY   81 (268)
T ss_pred             eEecCCCCcccCCCCCCcchHHHHHHHHHHHHHHHcCCCEEEEECCCCccccCcEEecccccceeecCcccc-hhceeee
Confidence            588888998876443    256789999999998889999999999999987544443 2344455567885 6889999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCcccc--cCCCCcccchhhhhhhhcCCCCCCEEEeecCCC-CCHHHHHHHHHHhcc-cc
Q 025580          130 PAPGAPELAKRVKDLLKASGIKHVNE--DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH-HTGTYHYNIGKALAP-LK  205 (250)
Q Consensus       130 ~~~G~~~LA~~i~~~l~~~Gid~~~~--~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~-~~~~~~~~LG~aL~~-l~  205 (250)
                      +++||++||++|.+.++++||+ +..  +.++++|||+||||++|+|+.++||||+|+|.. +++++||+||++|++ ++
T Consensus        82 ~~~g~~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~~~~~~~~~~lG~al~~~l~  160 (268)
T cd07371          82 SINVDVELAEACVEEGRKAGLV-TRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNLYLSGEETEGEMDLAGKATR  160 (268)
T ss_pred             cCCCCHHHHHHHHHHHHHCCCc-EEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999995 654  678999999999999999999999999999876 799999999999985 46


Q ss_pred             c--CCeEEEEecCCcccCcccccCC---CCCChhHHHHHHHHHHHHHcCC
Q 025580          206 E--EGVLIIGSGSATHNLRALQFES---SSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       206 d--erVlIIgSG~lSHnL~~~~~~~---~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      +  +||+|||||++||||...+++.   .++.+++++||+++++.+++||
T Consensus       161 ~~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~~~~gd  210 (268)
T cd07371         161 DAGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLELMEQGD  210 (268)
T ss_pred             HcCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHHHHcCC
Confidence            6  8999999999999997776531   1356999999999999999986

This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.

>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases

Probab=100.00  E-value=5.8e-42  Score=307.06  Aligned_cols=186  Identities=22%  Similarity=0.239  Sum_probs=156.6

Q ss_pred             EEEEcCCCCCCCCCCC--hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccCCC
Q 025580           54 TFFISHGSPTLSIDES--LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPA  131 (250)
Q Consensus        54 ~~fisHGsP~l~~~~~--~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~  131 (250)
                      ++|+|||+|++.....  +++.+++++.+.+  ..+||+||||||||......++++..+ .++|++|||.+.|+.+|  
T Consensus         2 ~~fi~HG~~~~~~~~~~~~~~~~~l~~~~~~--~~~Pd~IvvispH~~~~~~~~~i~~~~-~~~g~~~~p~~~~~~~~--   76 (256)
T cd07952           2 IAVIPHGDEIIDPLDEESRKLNEAIKEEGAK--NDDPDVLVVITPHGIRLSGHVAVILTE-YLEGTLRTNKVLIRSKY--   76 (256)
T ss_pred             eEEcCCCCccCCCCCcchHHHHHHHHHHHHH--hcCCCEEEEECCCcccccCceEEeecC-eeeeecccCCCceEEec--
Confidence            4899999988876433  3556777776654  568999999999999876666665443 49999999999988777  


Q ss_pred             CCCHHHHHHHHHHHHhCCCCcccc---------cCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhc
Q 025580          132 PGAPELAKRVKDLLKASGIKHVNE---------DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALA  202 (250)
Q Consensus       132 ~G~~~LA~~i~~~l~~~Gid~~~~---------~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~  202 (250)
                      |||++||++|.+.+.++|++ +..         +..+++|||+||||+||+|.   ||||+|++..+++++||+||++|+
T Consensus        77 ~~d~ela~~l~~~~~~~g~~-~~~~~~~~~~~~~~~~~lDHG~~VPL~fl~~~---pvV~is~~~~~~~~~~~~lG~aL~  152 (256)
T cd07952          77 PNDRELANEIYKSARADGIP-VLGINFATSSGDNSDFPLDWGELIPLSFLKKR---PIVLITPPRLLPREELVEFGRALG  152 (256)
T ss_pred             CCCHHHHHHHHHHHHHcCCc-eeeccchhhccccCCCCCCccccccHhhCCCC---CeEEEccccCCCHHHHHHHHHHHH
Confidence            69999999999999999984 432         24688999999999999995   999999977679999999999999


Q ss_pred             cc---ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          203 PL---KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       203 ~l---~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      ++   +++||+|||||+|||++....+++  +.+|+++||+|+++.|++||
T Consensus       153 ~~~~~~~~~vliIaSGdlSH~l~~~~p~~--~~~~a~~fD~~~~~~l~~~d  201 (256)
T cd07952         153 KALEGYEKRVAVIISADHAHTHDPDGPYG--YSPDAAEYDAAIVEAIENND  201 (256)
T ss_pred             HHHHhcCCcEEEEEecCccccCCCCCCCC--CCcchHHHHHHHHHHHHcCC
Confidence            98   567999999999999998665543  57999999999999999987

This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.

>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol

Probab=100.00  E-value=1.8e-41  Score=306.08  Aligned_cols=188  Identities=24%  Similarity=0.324  Sum_probs=153.8

Q ss_pred             ccccceEEEEcCCCCCCCCCCC----hhHHHHHHHHHHHhhcCCCCEEEEEeCCC-CCCC------CeEEecCCCCccCC
Q 025580           48 RLSVMDTFFISHGSPTLSIDES----LPARGFLQAWQAKVFSQRPNSILVISAHW-DTDF------PSVNVVQRNDTIHD  116 (250)
Q Consensus        48 ~~~~~p~~fisHGsP~l~~~~~----~~~~~~l~~l~~~l~~~~PdaIVviS~Hw-~~~~------~~I~~~~~~~~~~D  116 (250)
                      |.++.-++++||  +++.-...    .++.++++++++++++.+||+|||||||| .+..      ++|.+++....++|
T Consensus         1 M~~iv~~~~~~H--~~~~~~~~~~~~~~~~~al~~~~~~l~~~~Pd~ivvis~dH~~~~~~~~~p~~~i~~~~~~~~~~~   78 (268)
T cd07367           1 MAKIVGAAATSH--ILMSPKGVEDQAARVVQGMAEIGRRVRESRPDVLVVISSDHLFNINLSLQPPFVVGTADSYTPFGD   78 (268)
T ss_pred             CceeEEEEecCC--cCcCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCceEEeeccccccCCc
Confidence            556777899999  54443111    25678899999999889999999999955 4422      34544443223344


Q ss_pred             CCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCC----CHH
Q 025580          117 FYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH----TGT  192 (250)
Q Consensus       117 f~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~----~~~  192 (250)
                      | |||..      .++||++||++|.+.+.++||+ +..+.++++|||+||||+||+|+.++||||||+|...    +++
T Consensus        79 ~-g~p~~------~~~gd~~LA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~~~p~~~~~  150 (268)
T cd07367          79 M-DIPRE------LFPGHREFARAFVRQAAEDGFD-LAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNINTDPAPSPR  150 (268)
T ss_pred             C-CCCcc------cCCCCHHHHHHHHHHHHHcCCC-eeeecCccCCcchhchHHHhCCCCCCCEEEEEecccCCCCCCHH
Confidence            4 88864      4699999999999999999995 7777889999999999999999999999999998876    489


Q ss_pred             HHHHHHHHhccc------ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          193 YHYNIGKALAPL------KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       193 ~~~~LG~aL~~l------~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      +||+||++|+++      +|+||+|||||+|||||....     ..+|+++||+|+++++++||
T Consensus       151 ~~~~lG~al~~~i~~~~~~d~rV~iiaSGgLSH~l~~~~-----~~~~~~efD~~i~~~l~~gd  209 (268)
T cd07367         151 RCWALGKVLAQYVEKRRPAGERVAVIAAGGLSHWLGVPR-----HGEVNEAFDRMFLDLLEGGN  209 (268)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEEcccccCCCCCCc-----ccccCHHHHHHHHHHHHcCC
Confidence            999999999999      789999999999999995432     24689999999999999987

CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.

>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases

Probab=100.00  E-value=1.7e-39  Score=289.70  Aligned_cols=191  Identities=25%  Similarity=0.324  Sum_probs=161.2

Q ss_pred             EEEEcCCCCCCCCCCCh--hHHHHHHHHHHHhhcCCCCEEEEEeCCCCC--CCCeEEecCCCCccCCCCCCCcccccccC
Q 025580           54 TFFISHGSPTLSIDESL--PARGFLQAWQAKVFSQRPNSILVISAHWDT--DFPSVNVVQRNDTIHDFYGFPKQMYDLKY  129 (250)
Q Consensus        54 ~~fisHGsP~l~~~~~~--~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~--~~~~I~~~~~~~~~~Df~gFp~~~y~~~y  129 (250)
                      ++|+|||+|+...++..  ...++++++++++.+.+||+|||+||||..  ..+.|+..+..++.|||    .+.|+..|
T Consensus         2 ~~~v~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~iviis~hh~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~   77 (260)
T cd07320           2 AIIIPHGPALYAAEDTGKTRNDYQPIEISKRIKEKRPDTIIVVSPHHLVIISATAITCAETFETADSG----QWGRRPVY   77 (260)
T ss_pred             CCcccCCCcchhhcccccccCchHHHHHHHHHHHhCCCEEEEEeCCccccCCCEEEeecceecccccc----ccCCCCCc
Confidence            47999999888774432  112368889888877899999999999995  45677777778889998    44677889


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCcccccCC-CCcccchhhhhhhhcCC-CCCCEEEeecCCCC-CHHHHHHHHHHhcccc-
Q 025580          130 PAPGAPELAKRVKDLLKASGIKHVNEDRK-RGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHH-TGTYHYNIGKALAPLK-  205 (250)
Q Consensus       130 ~~~G~~~LA~~i~~~l~~~Gid~~~~~~~-~~lDHG~~vPL~~l~p~-~diPVV~vS~~~~~-~~~~~~~LG~aL~~l~-  205 (250)
                      +++||++||++|.+.+.+ |++ +....+ +++|||+||||.||+|+ .++|||||+++... ++++|++||++|++++ 
T Consensus        78 ~~~~d~ela~~l~~~~~~-~~~-~~~~~~~~~~DHg~~vpl~~l~~~~~~~piVpi~i~~~~~~~~~~~~lG~aL~~~~~  155 (260)
T cd07320          78 DVKGDPDLAWEIAEELIK-EIP-VTIVNEMDGLDHGTLVPLSYIFGDPWDFKVIPLSVGVLVPPFAKLFEFGKAIRAAVE  155 (260)
T ss_pred             CCCCCHHHHHHHHHHHHh-cCC-EEEEcccccCCeeecccHHHHhCCCCCCcEEEEEeeccCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999998 995 554443 69999999999999998 89999999998776 8999999999999998 


Q ss_pred             --cCCeEEEEecCCcccCcccccC-CCCCChhHHHHHHHHHHHHHcCC
Q 025580          206 --EEGVLIIGSGSATHNLRALQFE-SSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       206 --derVlIIgSG~lSHnL~~~~~~-~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                        |+||+|||||++|||+...++. .....+|++|||+|+++.|++||
T Consensus       156 ~~~~~vliI~SGdlsH~~~~~~~~~~~~~~~~~~efD~~~~~~l~~~d  203 (260)
T cd07320         156 PSDLRVHVVASGDLSHQLQGDRPSSQSGYYPIAEEFDKYVIDNLEELD  203 (260)
T ss_pred             hcCCcEEEEEeCccccCCCCCCcccccCcCcchHHHHHHHHHHHHcCC
Confidence              7899999999999999877652 12356899999999999999987

Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class

>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase

Probab=100.00  E-value=5.6e-39  Score=291.09  Aligned_cols=190  Identities=19%  Similarity=0.329  Sum_probs=154.5

Q ss_pred             ccccceEEEEcCCCCCCCCCCC---------hhHHHHHHHHHHHhhcCCCCEEEEEe-CC----CCCCCCeEEecCCCCc
Q 025580           48 RLSVMDTFFISHGSPTLSIDES---------LPARGFLQAWQAKVFSQRPNSILVIS-AH----WDTDFPSVNVVQRNDT  113 (250)
Q Consensus        48 ~~~~~p~~fisHGsP~l~~~~~---------~~~~~~l~~l~~~l~~~~PdaIVviS-~H----w~~~~~~I~~~~~~~~  113 (250)
                      |.++.-++++|| .|.+-..+.         .+..++++++++++++.+||+||||| +|    |....++|.++..++.
T Consensus         1 M~~iv~a~~~sH-vP~ig~~~~~~~~~t~~~~~~~~a~~~~~~~v~~~~PD~iVvis~dH~~~f~~~~~p~f~i~~~~~~   79 (276)
T cd07949           1 MAKIIGGITTSH-VPAIGGAIAKGLQQTPYWKPFFDGFPPVHDWLEKAKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPSY   79 (276)
T ss_pred             ChHHHhhhcCCC-CCcccccccccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEECCcHHhhhccccCCcEEEecCccc
Confidence            444555678999 776653221         12368899999999999999999999 69    5555567777665555


Q ss_pred             cCCC--CCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCC--CCCEEEeecCCCC
Q 025580          114 IHDF--YGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEA--DIPVCQLSVQMHH  189 (250)
Q Consensus       114 ~~Df--~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~--diPVV~vS~~~~~  189 (250)
                      .+|+  +|+|.     +|+++||++||++|.+.+.++||| +....++++|||+||||+||+|+.  ++||||+|+|...
T Consensus        80 ~g~~~~~g~~~-----~~~~~g~~~LA~~i~~~~~~~g~d-~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvV~i~~n~~~  153 (276)
T cd07949          80 RNADEGWGIPA-----LAPFKGDPELSWHLIESLVEDEFD-ITTCQEMLVDHACTLPMQLFWPGAEWPIKVVPVSINTVQ  153 (276)
T ss_pred             cCcccccCCCC-----CCCCCCCHHHHHHHHHHHHHcCCC-eeccCCCCCCcchhhHHHHhcCccCCCCCEEEEEeccCC
Confidence            5553  56665     579999999999999999999995 777789999999999999999986  5999999999775


Q ss_pred             ----CHHHHHHHHHHhccc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          190 ----TGTYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       190 ----~~~~~~~LG~aL~~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                          ++++||+||++|+++     +|+||+|||||+|||||....     +..|+++||+|+++.++ +|
T Consensus       154 ~p~~~~~~~~~lG~al~~~i~~~~~d~rv~iiaSG~lSH~l~~~~-----~g~~~~~fD~~~~~~l~-~d  217 (276)
T cd07949         154 HPLPSPKRCFKLGQAIGRAIESYPEDLRVVVLGTGGLSHQLDGER-----AGFINKDFDRYCLDKMV-DN  217 (276)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCC-----cccchHHHHHHHHHHHh-cC
Confidence                789999999999998     568999999999999995432     23478999999999998 44

This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.

>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol

Probab=100.00  E-value=1.4e-38  Score=290.82  Aligned_cols=197  Identities=18%  Similarity=0.235  Sum_probs=157.6

Q ss_pred             cceEEEEcCCCCCCCCCCC---h---------hHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCC
Q 025580           51 VMDTFFISHGSPTLSIDES---L---------PARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFY  118 (250)
Q Consensus        51 ~~p~~fisHGsP~l~~~~~---~---------~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~  118 (250)
                      +.-+..++| .|++.+.+.   .         .+.++++++++++++.+||+|||+||||.+... ......++..+||.
T Consensus         3 iv~a~~~pH-~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~Pd~IVViSpHw~~~~~-~~~~~~p~~~G~~~   80 (294)
T cd07372           3 IISGFLAPH-PPHLVYGENPPQNEPRSQGGWEQLRWAYERARESIEALKPDVLLVHSPHWITSVG-HHFLGVPELSGRSV   80 (294)
T ss_pred             eEEEEecCC-CCeeecccCCcccccccchhHHHHHHHHHHHHHHHHHcCCCEEEEECCCcccccC-eeeecCCccccccc
Confidence            445778899 455553221   1         255889999999999999999999999999864 22333455677777


Q ss_pred             CC-CcccccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCcccchhhhhhhhcCCCCCCEEEeecCC-------C
Q 025580          119 GF-PKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVN--EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM-------H  188 (250)
Q Consensus       119 gF-p~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~--~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~-------~  188 (250)
                      +| -+++|+++|+++||++||++|.+.++++||+ +.  .+.++++|||+||||+||+|+.++|||++|++.       .
T Consensus        81 ~~~~p~~~~~~~~~~gd~eLA~~i~~~~~~~Gi~-~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l~~~~~~~  159 (294)
T cd07372          81 DPIFPNLFRYDFSMNVDVELAEACCEEGRKAGLV-TKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNTPYYLNTK  159 (294)
T ss_pred             ccccccceeeccCCCCCHHHHHHHHHHHHHCCCC-eeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCccccccccc
Confidence            75 2358899999999999999999999999995 54  367899999999999999999999999999853       2


Q ss_pred             CCHHHHHHHHHHhccc-c--cCCeEEEEecCCcccCc---ccccCCC-CCCh---hHHHHHHHHHHHHHcCC
Q 025580          189 HTGTYHYNIGKALAPL-K--EEGVLIIGSGSATHNLR---ALQFESS-SISS---WALEFDNWLKDALLEGR  250 (250)
Q Consensus       189 ~~~~~~~~LG~aL~~l-~--derVlIIgSG~lSHnL~---~~~~~~~-~~~~---~a~eFD~~v~~~i~~Gd  250 (250)
                      .++++||+||++|+++ +  ++||+|||||+|||++.   ...+++. ++++   .+++||+.+++.+++||
T Consensus       160 ~~~~~~~~lG~ai~~al~~~~~RV~vIaSG~LSH~l~~~~~~~p~~~~~~~~~~~~~~~fD~~vl~~l~~gd  231 (294)
T cd07372         160 EGLGEMDVLGKATREAIRKTGRRAVLLASNTLSHWHFHEEPAPPEDMSKEHPETYAGYQWDMRMIELMRQGR  231 (294)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcccccCccCCCCCccccccccccchhHHHHHHHHHHHHHcCC
Confidence            4589999999999994 4  48899999999999984   3334321 2232   89999999999999997

2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin

>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate

Probab=100.00  E-value=1.3e-38  Score=288.77  Aligned_cols=191  Identities=22%  Similarity=0.323  Sum_probs=156.2

Q ss_pred             ccccceEEEEcCCCCCCCC---CC--C----hhHHHHHHHHHHHhhcCCCCEEEEE-eCCCCCC----CCeEEecCCCCc
Q 025580           48 RLSVMDTFFISHGSPTLSI---DE--S----LPARGFLQAWQAKVFSQRPNSILVI-SAHWDTD----FPSVNVVQRNDT  113 (250)
Q Consensus        48 ~~~~~p~~fisHGsP~l~~---~~--~----~~~~~~l~~l~~~l~~~~PdaIVvi-S~Hw~~~----~~~I~~~~~~~~  113 (250)
                      |.++.-++.+|| .|.+..   .+  .    .++.++++++++++++.+||+|||| |+|...+    .+.+.++..++.
T Consensus         1 Ma~iv~a~~~sH-~P~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pD~vVvi~~dH~~~f~~~~~P~f~i~~~~~~   79 (277)
T cd07364           1 MARIIAGVGTSH-VPAIGAAMDNGKTDEPYWKPLFKGYQPARDWIKKNKPDVAIIVYNDHASAFDLDIIPTFAIGTAEEF   79 (277)
T ss_pred             CHHHHhhhcCCC-CccccccccCCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHhhcccCCCceEEeecccc
Confidence            444555678899 777665   22  1    2567889999999999999999999 7785544    346666666677


Q ss_pred             cCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCC---CCEEEeecCCC--
Q 025580          114 IHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMH--  188 (250)
Q Consensus       114 ~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~vS~~~~--  188 (250)
                      .+++++|...-..   +++||++||++|.+.+.++||+ +....++++|||+||||+||+|+.+   +||||+|+|..  
T Consensus        80 ~~~~~~~g~~~~~---~~~g~~~LA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~p~pVV~vsvn~~~~  155 (277)
T cd07364          80 QPADEGYGPRPVP---DVQGHPDLAWHIAQSLILDDFD-MTIVNEMDVDHGLTVPLSIMYGQPEAWPCKVIPLCVNVVQY  155 (277)
T ss_pred             ccCccccCCCCCC---CCCCCHHHHHHHHHHHHHcCCC-EEecCCCCCCcchhhhHHHhCCccccCCCCeEEEEeccCCC
Confidence            7777788543221   6899999999999999999995 7777889999999999999999764   78999999877  


Q ss_pred             --CCHHHHHHHHHHhccc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHc
Q 025580          189 --HTGTYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLE  248 (250)
Q Consensus       189 --~~~~~~~~LG~aL~~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~  248 (250)
                        .++++||+||++|+++     +|+||+|||||+|||||.....     ..++++||+|+++++++
T Consensus       156 p~~~~~~~~~lG~al~~~i~~~~rd~rV~iIaSG~lSH~L~~~~~-----g~~~~eFD~~i~~~l~~  217 (277)
T cd07364         156 PQPTGKRCFALGKAIRRAVESYDEDLKVAIWGTGGMSHQLQGERA-----GLINKEFDNRFLDKLIS  217 (277)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCCc-----cCchHHHHHHHHHHHHh
Confidence              5899999999999999     7899999999999999976531     24599999999999985

Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.

>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes

Probab=100.00  E-value=3.3e-38  Score=284.15  Aligned_cols=187  Identities=22%  Similarity=0.307  Sum_probs=152.9

Q ss_pred             cceEEEEcCCCCCCCCCCC--------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----C--CeEEecCCCCccC
Q 025580           51 VMDTFFISHGSPTLSIDES--------LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-----F--PSVNVVQRNDTIH  115 (250)
Q Consensus        51 ~~p~~fisHGsP~l~~~~~--------~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-----~--~~I~~~~~~~~~~  115 (250)
                      +.-++++||  ||+++++.        .++.++|+++++++++.+||+||||||||.+.     .  ++|+.++....  
T Consensus         2 iv~~~~~~H--~P~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~ivvis~~h~~~~~~~~~~~~~i~~~~~~~~--   77 (271)
T cd07359           2 IVLGIGASH--APGLTGAADPGPDAVRAAVFAAFARIRDRLEAARPDVVVVVGNDHFTNFFLDNMPAFAIGIADSYEG--   77 (271)
T ss_pred             eEEEEecCC--CCcccCCCCCCcHhHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHhhcCcccCCceEEeecccccC--
Confidence            345688999  66554332        25678899999999889999999999965544     2  35555444432  


Q ss_pred             CCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCC----CH
Q 025580          116 DFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH----TG  191 (250)
Q Consensus       116 Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~----~~  191 (250)
                      ++.+|   +|..+|+++||++||++|.+.+.+.|+ ++..+.++++|||+||||+||+|+.++||||||+|...    ++
T Consensus        78 ~~~~~---~~~~~~~~~~d~elA~~i~~~~~~~g~-~~a~~~~~~lDHg~~vpL~~l~~~~~~pvVpvsv~~~~~~~~~~  153 (271)
T cd07359          78 PDEGW---LGIPRAPVPGDADLARHLLAGLVEDGF-DVAFSYELRLDHGITVPLHFLDPDNDVPVVPVLVNCVTPPLPSL  153 (271)
T ss_pred             Ccccc---ccCcCCCCCCCHHHHHHHHHHHHHcCC-CeeccCCCCCCcchhhHHHHhcCCCCCCEEEEEecccCCCCCCH
Confidence            22222   466789999999999999999999999 47777789999999999999999999999999998754    78


Q ss_pred             HHHHHHHHHhccc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          192 TYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       192 ~~~~~LG~aL~~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      ++||+||++|+++     +|+||+|||||+||||+....     +.+|+++||+|+.+++++||
T Consensus       154 ~~~~~lG~aL~~~i~~~~~d~rV~iIaSGdlSH~l~~~~-----~g~~~~~fD~~~~~~l~~~d  212 (271)
T cd07359         154 RRCYALGRALRRAIESFPGDLRVAVLGTGGLSHWPGGPR-----HGEINEEFDREFLDLLERGD  212 (271)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCCCCCcc-----ccccCHHHHHHHHHHHHhCC
Confidence            9999999999997     578999999999999997642     23689999999999999987

This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres

>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway

Probab=100.00  E-value=4.2e-38  Score=285.39  Aligned_cols=191  Identities=16%  Similarity=0.190  Sum_probs=152.2

Q ss_pred             ccccceEEEEcCCCCCCCC--CCC------hhHHHHHHHHHHHhhcCCCCEEEEEe-CCCCCCC----CeEEecCCCCcc
Q 025580           48 RLSVMDTFFISHGSPTLSI--DES------LPARGFLQAWQAKVFSQRPNSILVIS-AHWDTDF----PSVNVVQRNDTI  114 (250)
Q Consensus        48 ~~~~~p~~fisHGsP~l~~--~~~------~~~~~~l~~l~~~l~~~~PdaIVviS-~Hw~~~~----~~I~~~~~~~~~  114 (250)
                      |.++.-++++||  ||+++  ++.      .++.++++++++++++.+||+||||| +||..+.    +.+.++... ..
T Consensus         1 M~~iv~a~~~sH--~P~i~~~~~~~~~~~~~~~~~a~~~~~~~v~~~~pD~ivvi~~dH~~~f~~~~~P~f~i~~~~-~~   77 (277)
T cd07368           1 MGKIVGGFMMPH--DPVMFVTPTAPPAAQREICWHAYAICAERLAALQVTSVVVIGDDHYTLFGTYCLPMYLIGTGD-VD   77 (277)
T ss_pred             CcceeEEeecCC--CccccCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHhhhhhccCCceEEeccc-cc
Confidence            556777899999  55554  331      26678899999999999999999998 5666542    334444333 36


Q ss_pred             CCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCC-----CCCCEEEeecCC--
Q 025580          115 HDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-----ADIPVCQLSVQM--  187 (250)
Q Consensus       115 ~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~-----~diPVV~vS~~~--  187 (250)
                      +||..|+...   +..++|+++||++|.+.+.++||| +..+.++++|||+|+||++|+|.     .++|+|||++|.  
T Consensus        78 g~~~~~~~~~---~~~~~g~~eLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~~~~~~~~~~~p~VPV~~n~~~  153 (277)
T cd07368          78 GPYDPLPGLP---RAVIENNEPLAHHIMQHGLEYGID-WAVARSFTVDHAATIPIHLAVRPVRAKGKGMRAIPVYLATGV  153 (277)
T ss_pred             CCccccCCCC---cccCcCCHHHHHHHHHHHHHcCCC-EeeecCcCCCcchhccHHHHhCcccccCCCCCeEEEEEeccc
Confidence            6665554321   235799999999999999999995 77778999999999999999985     378888887754  


Q ss_pred             --CCCHHHHHHHHHHhcc-----cccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          188 --HHTGTYHYNIGKALAP-----LKEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       188 --~~~~~~~~~LG~aL~~-----l~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                        ..++++||+||++|++     ++|+||+|||||+|||||+...     ..+|+++||+|+++.+++||
T Consensus       154 ~p~~~~~~~~~lG~al~~ai~~~~~d~rVliIaSG~LSH~l~~~~-----~~~~~~~fD~~~~~~l~~gd  218 (277)
T cd07368         154 DPFITSWRAHELGRVIGAAVEAWQGDERVAIIGSGGISHWVGTAE-----MGAVNEGFDREIMKLVAQGD  218 (277)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCcccCCCCCcc-----ccccCHHHHHHHHHHHHcCC
Confidence              4678999999999999     5689999999999999996543     24789999999999999986

This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.

>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=100.00  E-value=1.1e-37  Score=283.48  Aligned_cols=190  Identities=21%  Similarity=0.305  Sum_probs=154.3

Q ss_pred             ccccceEEEEcCCCCCCCCCC-C---------hhHHHHHHHHHHHhhcCCCCEEEEE-eCCCCCCC----CeEEecCCCC
Q 025580           48 RLSVMDTFFISHGSPTLSIDE-S---------LPARGFLQAWQAKVFSQRPNSILVI-SAHWDTDF----PSVNVVQRND  112 (250)
Q Consensus        48 ~~~~~p~~fisHGsP~l~~~~-~---------~~~~~~l~~l~~~l~~~~PdaIVvi-S~Hw~~~~----~~I~~~~~~~  112 (250)
                      |.++.-++.+||  ||++..+ +         .++.++++++++++++.+||+|||| |+|+..+.    +.+.++...+
T Consensus         1 M~~Iv~a~~~sH--~P~i~~~~~~g~~~~~~~~~~~~a~~~i~~~i~~~~PDvvVii~~dH~~~f~~d~~P~f~Ig~~~~   78 (284)
T PRK13366          1 MARITASVYTSH--VPAIGAAIDLGKTGEPYWQPVFKGYEFSKQWEKEEKPDVIFLVYNDHATAFSLDIIPTFAIGTAAE   78 (284)
T ss_pred             CcceeEEeecCC--CCccccccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcHHhhcccCCCceEEeeCce
Confidence            566778899999  6655542 1         2667889999999999999999999 88976653    3565555555


Q ss_pred             ccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCC---CCEEEeecCCCC
Q 025580          113 TIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMHH  189 (250)
Q Consensus       113 ~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~vS~~~~~  189 (250)
                      ...|+.+|...  ++. +.+||++||++|.+.+.++||| +....++++|||+||||+||+|+.+   +||||+|+|...
T Consensus        79 ~~~~~~~~g~~--~v~-~~~g~~eLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~~ipvVpisvn~~~  154 (284)
T PRK13366         79 YQPADEGWGPR--PVP-KVIGHPDLAAHIAQSVIQDDFD-LTIVNKMDVDHGLTVPLSLMCGQPDAWPCPVIPFAVNVVQ  154 (284)
T ss_pred             ecCcccccCCC--CCC-CCCCCHHHHHHHHHHHHHCCCC-EeecCCCCCCccHHHHHHHhCccccCCCCceEEEeeccCC
Confidence            55566656322  234 7899999999999999999995 7777889999999999999999755   999999999887


Q ss_pred             ----CHHHHHHHHHHhccc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHc
Q 025580          190 ----TGTYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLE  248 (250)
Q Consensus       190 ----~~~~~~~LG~aL~~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~  248 (250)
                          ++++||+||++|+++     +|+||+|||||+|||||...+. |  +  .+++||+|+++.+++
T Consensus       155 ~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSGgLSH~l~~p~~-g--~--~~~~fD~~~l~~l~~  217 (284)
T PRK13366        155 YPVPSGRRCFALGQAIRRAVESYDEDLNVQIWGTGGMSHQLQGPRA-G--L--INREWDNAFLDRLIA  217 (284)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCCC-C--C--CcHHHHHHHHHHHhc
Confidence                899999999999999     4689999999999999985332 2  2  279999999999965

>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=100.00  E-value=1.5e-37  Score=280.16  Aligned_cols=188  Identities=22%  Similarity=0.331  Sum_probs=157.6

Q ss_pred             ccccceEEEEcCCCCCCCC-CCC---hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-------CCeEEecCCCCccCC
Q 025580           48 RLSVMDTFFISHGSPTLSI-DES---LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-------FPSVNVVQRNDTIHD  116 (250)
Q Consensus        48 ~~~~~p~~fisHGsP~l~~-~~~---~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-------~~~I~~~~~~~~~~D  116 (250)
                      |.++.-++++||  +.+.- .++   .++.++|+++++++.+.+||+|||+||||.+.       .++|..++...+.||
T Consensus         1 m~~i~~~~~~pH--~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~iViis~~h~~~~~~~~~~~~~i~~~~~~~p~gd   78 (269)
T PRK13358          1 MGKIVGAFATSH--VLMSSKGGEEQAKRVVEGMREIGRRLRELRPDVLVVIGSDHLFNFNTGCQPPFLVGTGDSDTPYGD   78 (269)
T ss_pred             Chhhheehcccc--cccCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCCeEEEecCCCCCccc
Confidence            455667889999  43321 111   36778999999999888999999999999854       345666667778899


Q ss_pred             CCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCC----HH
Q 025580          117 FYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHT----GT  192 (250)
Q Consensus       117 f~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~----~~  192 (250)
                      | |||++      .++||++||++|.+.+.+.|++ +..+.++++|||+|+||++|+|+.++||||||+++..+    .+
T Consensus        79 ~-g~~~~------~~~g~~~LA~~l~~~~~~~~~~-~a~~~~~~~DHg~~vPl~~l~~~~~~pvVpisv~~~~~p~~~~~  150 (269)
T PRK13358         79 M-DIPRE------LVPGHRAFAQAIALHRAADGFD-LAQAEELRPDHGVMIPLLFMDPGRRIPVVPVYVNINTDPFPSAK  150 (269)
T ss_pred             c-CCCcc------cCCCCHHHHHHHHHHHHHcCCC-eeeccccCCCcchhhhHHHhcCCCCCCEEEEEecccCCCCCCHH
Confidence            8 99986      3699999999999999999995 66777899999999999999999999999999987554    59


Q ss_pred             HHHHHHHHhcccc------cCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          193 YHYNIGKALAPLK------EEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       193 ~~~~LG~aL~~l~------derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      +||+||++|+++.      |+||+|||||+|||++....     +.+|+++||+|+.+++++||
T Consensus       151 ~~~~lG~al~~~~~~~~~~~~rvlvIaSGdlSH~l~~~~-----~~~~~~~fD~~~~~~i~~~D  209 (269)
T PRK13358        151 RCAALGEVIRQAVEKDRPADERVAVIGTGGLSHWLGVPE-----HGEVNEDFDRMVMDALVSGD  209 (269)
T ss_pred             HHHHHHHHHHHHHHhhCCCCCcEEEEecCCccCCCCCcc-----ccccHHHHHHHHHHHHHcCC
Confidence            9999999999973      57999999999999997432     35789999999999999987

>PRK03881 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-37  Score=299.21  Aligned_cols=192  Identities=22%  Similarity=0.346  Sum_probs=168.8

Q ss_pred             cceEEEEcCCCCCCCCCCC--------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCc
Q 025580           51 VMDTFFISHGSPTLSIDES--------LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPK  122 (250)
Q Consensus        51 ~~p~~fisHGsP~l~~~~~--------~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~  122 (250)
                      +.-+++++|  ||+++++.        .++.++|+++++++.+.+||+|||+||||+.....+.+...+...+||+||+.
T Consensus         3 i~~a~~~PH--~P~l~p~~~~~~~~~~~~~~~a~~~~~~~l~~~~Pd~IVVispH~~~~~~~~~i~~~~~~~gdf~~fg~   80 (467)
T PRK03881          3 IVGAYLMPH--PPIIVPEVGRGEEKKIQATIDALRELARRIAEKKPDTIIIISPHGPVFRDAVAISDGPRLKGDLGRFGA   80 (467)
T ss_pred             eEEEEEcCC--CCEeecCCCCCchhhHHHHHHHHHHHHHHHHHhCCCEEEEECCCcccccCcEEEecCcceeeehhccCC
Confidence            567889999  56776531        36778999999999888999999999999987778888778889999999974


Q ss_pred             ccccccCCCCCCHHHHHHHHHHHHhCCCCcccc---------cCCCCcccchhhhhhhhcCC-CCCCEEEeecCCCCCHH
Q 025580          123 QMYDLKYPAPGAPELAKRVKDLLKASGIKHVNE---------DRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHHTGT  192 (250)
Q Consensus       123 ~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~---------~~~~~lDHG~~vPL~~l~p~-~diPVV~vS~~~~~~~~  192 (250)
                        |+++|+++||++||++|.+.++++||+ +..         +.++++|||+||||.||+|. .++|||||++ ...+++
T Consensus        81 --~~v~~~~~~d~eLA~~i~~~~~~~g~~-~~~~~~~~~~~~~~~~~lDHg~~VpL~fl~~~~~d~pVVpis~-~~~~~~  156 (467)
T PRK03881         81 --PEVSFSFKNDLELVEEIAEEAKKEGIP-VVEVDEELARKYEVSGELDHGTMVPLYFLRKAGSDFKLVHISY-GGLSPE  156 (467)
T ss_pred             --CCccccCCCCHHHHHHHHHHHHHcCCc-eEeecccccccccCCCCCCceEEeehhhhccccCCCCEEEEeC-CCCCHH
Confidence              789999999999999999999999995 554         57789999999999999998 7999999999 577999


Q ss_pred             HHHHHHHHhccccc---CCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          193 YHYNIGKALAPLKE---EGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       193 ~~~~LG~aL~~l~d---erVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      +|++||++|+++++   +||+|||||++||++....+++  +.+++++||+|+.++|++||
T Consensus       157 ~~~~lG~aL~~~~~~~~~rvliIaSGdLSH~l~~~~p~g--~~~~a~~fD~~ii~~i~~gD  215 (467)
T PRK03881        157 ELYKFGMAIREAAEELGRKVVLIASGDLSHRLTPDGPYG--YAPEGPEFDRAIVELLSKGD  215 (467)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEEeCcccccCCCCCCCC--CCcchHHHHHHHHHHHHcCC
Confidence            99999999999864   5999999999999997765533  57899999999999999987

>cd07951 ED_3B_N_AMMECR1 The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain

Probab=100.00  E-value=3.1e-37  Score=275.36  Aligned_cols=187  Identities=24%  Similarity=0.333  Sum_probs=162.2

Q ss_pred             EEcCCCCCCCCCCC--------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccc
Q 025580           56 FISHGSPTLSIDES--------LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDL  127 (250)
Q Consensus        56 fisHGsP~l~~~~~--------~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~  127 (250)
                      |+||  ||+++++.        .+++++++++++.+.+.+||+|||+||||.+....++++..++..+||+||+  .|++
T Consensus         1 ~~ph--~p~l~p~~~~~~~~~~~~~~~a~~~~~~~l~~~~pd~ivvvg~h~~~~~~~~~~~~~~~~~~~~~gf~--~~~~   76 (256)
T cd07951           1 LVPH--PPLLVPEVGGGEEAEIAATRAACEAAARRLAAARPDTIVVVSPHAPVFRDAFAISTGGTLRGDFSRFG--APEV   76 (256)
T ss_pred             CCCC--CCcccccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCcccccceeEeccCCceecchhhcC--CCcc
Confidence            4789  55554221        2567889999999888899999999999999888898888889999999996  4889


Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCcccccCC--CCcccchhhhhhhhcCC-CCCCEEEeecCCCCCHHHHHHHHHHhccc
Q 025580          128 KYPAPGAPELAKRVKDLLKASGIKHVNEDRK--RGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHHTGTYHYNIGKALAPL  204 (250)
Q Consensus       128 ~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~--~~lDHG~~vPL~~l~p~-~diPVV~vS~~~~~~~~~~~~LG~aL~~l  204 (250)
                      +|++++|++||++|.+.++++|++ +.....  +++|||+||||.||+|. .++|||||+++ ..++++|++||++|+++
T Consensus        77 ~~~~~~d~~la~~l~~~l~~~g~~-~~~~~~~~~~~DHg~~vpl~~l~~~~~~~pvVpi~~~-~~~~~~~~~lG~aL~~~  154 (256)
T cd07951          77 SFGVDLDLELVEEIAGEADKEGLP-VGALGERIPELDHGTLVPLYFLRKAGSDGKLVRIGLS-GLSPEELYAFGRALAAA  154 (256)
T ss_pred             eEeeeCCHHHHHHHHHHhhhcCCC-cccccCCCCCCCchhhhhHHhhcccCCcCCeEEEecC-CCCHHHHHHHHHHHHHH
Confidence            999999999999999999999994 554433  69999999999999998 89999999994 67999999999999998


Q ss_pred             ---ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          205 ---KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       205 ---~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                         ++++|+|||||++|||+...+++  ...+++.+||+|+.++|++||
T Consensus       155 ~~~~~~~vlii~SgdlsH~l~~~~p~--~~~~~a~~~D~~~~~~l~~~D  201 (256)
T cd07951         155 AEELGRRVALIASGDLSHRLTEDAPG--GYDPRGPEFDAAIAEALAKGD  201 (256)
T ss_pred             HHhcCCcEEEEEecccccccCCCCCC--CCCcchHHHHHHHHHHHHcCC
Confidence               46899999999999999776553  246889999999999999986

This subfamily is composed of uncharacterized proteins containing an N-terminal domain with similarity to the catalytic B subunit of class III extradiol dioxygenases and a C-terminal AMMECR1-like domain. This model represents the N-terminal domain. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon, however, proteins in this subfamily do not contain a potential metal binding site and may not exhibit class III extradiol dioxygenase-like activity. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome.

>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=100.00  E-value=7.1e-37  Score=277.50  Aligned_cols=191  Identities=20%  Similarity=0.292  Sum_probs=155.9

Q ss_pred             ccccceEEEEcCCCCCCCCC------CC---hhHHHHHHHHHHHhhcCCCCEEEEEe-CCCCCC----CCeEEecCCCCc
Q 025580           48 RLSVMDTFFISHGSPTLSID------ES---LPARGFLQAWQAKVFSQRPNSILVIS-AHWDTD----FPSVNVVQRNDT  113 (250)
Q Consensus        48 ~~~~~p~~fisHGsP~l~~~------~~---~~~~~~l~~l~~~l~~~~PdaIVviS-~Hw~~~----~~~I~~~~~~~~  113 (250)
                      |+++..++++|| .|.+--.      .+   .+..++++++++++++.+||+||||| +|...+    .+.|.++...+.
T Consensus         1 M~~iv~~~~~sH-~P~vg~~~~~~~~~~~~~~~v~~a~~~~~~~v~~~~PDvvVvis~dH~~~ff~d~~p~f~i~~~~~~   79 (278)
T PRK13364          1 MAKIIGGITTSH-VPAIGGAIAKGLQQDPYWKPFFDGFPPVREWLEKVKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPEY   79 (278)
T ss_pred             ChhhhceeecCC-CCccccccccccccChhHHHHHHHHHHHHHHHHHhCCCEEEEECCchHhhhccccCCeEEEeeCcee
Confidence            455556788999 7755411      11   23368899999999999999999999 786552    357777777777


Q ss_pred             cCCCCCCC-cccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCC--CCEEEeecCCCC-
Q 025580          114 IHDFYGFP-KQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD--IPVCQLSVQMHH-  189 (250)
Q Consensus       114 ~~Df~gFp-~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~d--iPVV~vS~~~~~-  189 (250)
                      .+|+.+|. +.   . .+++||++||++|.+.+.++||| +....++++|||+||||+||+|+.+  +||||||+|+.. 
T Consensus        80 ~g~~~~~g~~~---~-~~~~~~~~lA~~i~~~l~~~gid-~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvVpv~ln~~~~  154 (278)
T PRK13364         80 SNADEGWGIPT---L-APFKGDTELSWHIIESLVEEEFD-ITTCQEMLVDHAFTLPLELFWPGRDYPVKVVPVCINTVQH  154 (278)
T ss_pred             cCChhhcCCCC---C-CCCCCCHHHHHHHHHHHHHcCCC-eecccCCCCCcchhhhHHHhCcccCCCCCEEEEEeeccCC
Confidence            88876663 21   1 48899999999999999999995 7778889999999999999999876  889999998766 


Q ss_pred             ---CHHHHHHHHHHhccc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          190 ---TGTYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       190 ---~~~~~~~LG~aL~~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                         ++++||+||++|+++     +|+||+|||||+|||||. ..++|  +.  +++||+++++.+++ |
T Consensus       155 p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH~l~-~~p~G--~~--~~~fD~~~l~~l~~-d  217 (278)
T PRK13364        155 PLPSARRCYKLGQAIGRAIASWPSDERVVVIGTGGLSHQLD-GERAG--FI--NKDFDLQCMDSLVS-D  217 (278)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCC-CCCcc--cC--CHHHHHHHHHHHHh-C
Confidence               799999999999999     579999999999999998 55544  33  49999999999986 5

>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate

Probab=100.00  E-value=6.2e-37  Score=277.86  Aligned_cols=188  Identities=20%  Similarity=0.304  Sum_probs=144.9

Q ss_pred             ccccceEEEEcCCCCCCCC-CCC---------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCC-CC----CCeEEecCCCC
Q 025580           48 RLSVMDTFFISHGSPTLSI-DES---------LPARGFLQAWQAKVFSQRPNSILVISAHWD-TD----FPSVNVVQRND  112 (250)
Q Consensus        48 ~~~~~p~~fisHGsP~l~~-~~~---------~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~-~~----~~~I~~~~~~~  112 (250)
                      |.++.-++++||  ||++. .+.         .++.++++++++++++.+||+|||+|+||. .+    .+.++++....
T Consensus         1 M~~iv~a~~~sH--~P~ig~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~PD~iVvi~~dH~~~f~~d~~p~f~Ig~~~~   78 (277)
T cd07950           1 MAKIIGGIGSSH--TPTIGFAYDKNKQNDPAWAPIFDGYEPVKQWLAEQKPDVLFMVYNDHVTSFFFDHYSAFALGVGDS   78 (277)
T ss_pred             ChHHhhhhhcCC--CCccCcccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHhccccCCcEEEEeccc
Confidence            344555678999  55543 221         267789999999999999999999995543 33    23454444333


Q ss_pred             c-cCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCC---CCEEEeecCCC
Q 025580          113 T-IHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMH  188 (250)
Q Consensus       113 ~-~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~vS~~~~  188 (250)
                      . .+|+.++|+..    |+++||++||++|.+.+.++||| +..+.++++|||+||||+||+|+.+   +||||+++|..
T Consensus        79 ~~~~d~~~~~~~~----~~~~g~~~LA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~~~~vVpi~~~~~  153 (277)
T cd07950          79 YEVADEGGGPRDL----PPIRGHAALAQHIAESLVADEFD-LTFFQDKPLDHGCFSPLSLLLPHEDGWPVKVVPLQVGVL  153 (277)
T ss_pred             ccccccccCCccC----CCCCCCHHHHHHHHHHHHhcCCC-eeeccCCCCCceeeeeHHHhCcccccCCCceEEEEEEeE
Confidence            3 66777788765    58899999999999999999995 7778899999999999999999866   78999988643


Q ss_pred             ---C-CHHHHHHHHHHhccc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHH
Q 025580          189 ---H-TGTYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALL  247 (250)
Q Consensus       189 ---~-~~~~~~~LG~aL~~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~  247 (250)
                         + ++++||+||++|+++     +|+||+|||||+|||||.. .++|.  .+  ++||++++++++
T Consensus       154 ~~~l~~~~~~~~lG~al~~~i~~~~~d~rv~iIaSG~lSH~l~~-~~~g~--~~--~~~D~~f~~~l~  216 (277)
T cd07950         154 QFPLPTARRCYKLGQALRRAIESYPEDLKVAVVGTGGLSHQVHG-ERAGF--NN--TEWDMEFLDLIE  216 (277)
T ss_pred             ecCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEcCccccCCCC-CCCCC--CC--HHHHHHHHHHHH
Confidence               3 799999999999999     6789999999999999974 34332  22  555566555555

Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en

>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP)

Probab=100.00  E-value=1.5e-36  Score=280.77  Aligned_cols=197  Identities=16%  Similarity=0.249  Sum_probs=159.2

Q ss_pred             ccccceEEEEcCCCCCCCC--CCC------hhHHHHHHHHHHHhhcCCCCEEEEE-eCCCCCC----CCeEEecCCCCcc
Q 025580           48 RLSVMDTFFISHGSPTLSI--DES------LPARGFLQAWQAKVFSQRPNSILVI-SAHWDTD----FPSVNVVQRNDTI  114 (250)
Q Consensus        48 ~~~~~p~~fisHGsP~l~~--~~~------~~~~~~l~~l~~~l~~~~PdaIVvi-S~Hw~~~----~~~I~~~~~~~~~  114 (250)
                      |.++.-++++||  ||+++  ++.      .++.++++++++++++.+||+|||| |+||...    .+.+.++..++..
T Consensus         1 Ma~iv~a~~~sH--~P~i~~~p~~~~~~~~~~~~~a~~~l~~~v~~~~PD~iVV~~sdH~~~~f~d~~P~f~I~~~~~~~   78 (329)
T cd07369           1 MAKIVAAIGMSH--APGALGWPDAPSPDVRARTEEATLKLGRTLTAARPDVIIAFLDDHFENHFRTNMPTIAIGVAESHS   78 (329)
T ss_pred             ChHHheeeecCC--CccccCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchhhhccccCccEEEeecceee
Confidence            445566788999  66554  342      2667889999999999999999997 9999843    2345555555555


Q ss_pred             CCCC----CCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCC--
Q 025580          115 HDFY----GFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH--  188 (250)
Q Consensus       115 ~Df~----gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~--  188 (250)
                      +||.    +|+-.   .+++++||++||++|.+.+.++||| +....++++|||++|||++|+|+.++||||||+|..  
T Consensus        79 G~~~~~~~~~~~~---~~~~~~gd~eLA~~I~~~l~~~G~d-va~~~~~~~DHG~~vPL~~l~p~~~ipvVpI~in~~~~  154 (329)
T cd07369          79 GPADQLMEALRVP---KKHYFPGNPEVAEQLLRALVHDSFD-CARMGEIEYGNNLLVPWKLMKPDLDVSVIPIYTNVFSP  154 (329)
T ss_pred             ccchhccccCCCC---cccCCCCCHHHHHHHHHHHHHCCCC-eeecCCcCCCccceeeHHHhcCCCCCcEEEEEEeccCC
Confidence            6643    44311   3578899999999999999999995 777778999999999999999999999999999887  


Q ss_pred             --CCHHHHHHHHHHhcccc-----cCCeEEEEecCCcc-----------------cCcccccCCCCC-------------
Q 025580          189 --HTGTYHYNIGKALAPLK-----EEGVLIIGSGSATH-----------------NLRALQFESSSI-------------  231 (250)
Q Consensus       189 --~~~~~~~~LG~aL~~l~-----derVlIIgSG~lSH-----------------nL~~~~~~~~~~-------------  231 (250)
                        +++++||+||++|++++     |+||+|||||+|||                 +|.+..++|++.             
T Consensus       155 p~~~~~r~~~lG~AI~~aie~~~~d~rVaiIaSG~LSH~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  234 (329)
T cd07369         155 PLMKYSRAYALGAAVRKAIEDLPDDLRVAFMATGGLSHWPPYWNPNQPETDPFLQRMKEYQTYGKPVLEKDPNLFVDLAA  234 (329)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCccccccchhhhhhhhhccccCcCCcCcchhhhhhhhhhhh
Confidence              78999999999999986     48999999999999                 566666654311             


Q ss_pred             ----------------Ch-hHHHHHHHHHHHHHcCC
Q 025580          232 ----------------SS-WALEFDNWLKDALLEGR  250 (250)
Q Consensus       232 ----------------~~-~a~eFD~~v~~~i~~Gd  250 (250)
                                      +| .+++||+++++++++||
T Consensus       235 ~~~~~~~~~~~~~~~~~p~i~~~fD~~~l~~l~~gd  270 (329)
T cd07369         235 YEIEMAKKNQWPLNSKHPLVNAAWDRKFLKAYCRGD  270 (329)
T ss_pred             hhhhhhhhhcccccccCCccCHHHHHHHHHHHHcCC
Confidence                            56 49999999999999987

This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.

>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional

Probab=100.00  E-value=2.5e-36  Score=286.09  Aligned_cols=187  Identities=22%  Similarity=0.311  Sum_probs=151.2

Q ss_pred             ccceEEEEcCCCCCCCC----CCC-----hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----C--CeEEecCCCCc
Q 025580           50 SVMDTFFISHGSPTLSI----DES-----LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-----F--PSVNVVQRNDT  113 (250)
Q Consensus        50 ~~~p~~fisHGsP~l~~----~~~-----~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-----~--~~I~~~~~~~~  113 (250)
                      ++...+..|| +|.+..    ...     .+..++++.+++++++.+||+||||+++|.+.     .  ++|++++... 
T Consensus       150 ~Iv~g~~tSH-~P~ig~A~d~~~~~~~~~~~v~~~~~~~r~~l~~~~PDVvVi~~nDH~~~Ff~d~mP~FaIG~~~~~~-  227 (444)
T PRK13372        150 QISAALFSSH-VPAIGAAIDLGKTEEDYWKKLFAGYDLSREWAKEHLPDVIILVYNDHATAFDLEIIPTFAIGTAAEFP-  227 (444)
T ss_pred             ceeeeeccCc-ccccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhhhcCcccCCCeEEEEccccC-
Confidence            4667888999 776544    111     24567888999999999999999999866553     2  4555554432 


Q ss_pred             cCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCC---CCCEEEeecCCCC-
Q 025580          114 IHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEA---DIPVCQLSVQMHH-  189 (250)
Q Consensus       114 ~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~---diPVV~vS~~~~~-  189 (250)
                      -+|+ |+.+.   -..++||+++||++|++.|.++||| +..+.++++|||+||||.+|+|++   ++||||||+|... 
T Consensus       228 p~d~-g~G~~---~v~~~pG~peLA~~I~~~L~~~GfD-~a~~~erglDHG~~vPL~lm~P~ad~~~IPVVPvsvN~~~~  302 (444)
T PRK13372        228 PADE-GWGPR---PVPDVIGHPELAAHIAQSVIQDDFD-LTIVNEMDVDHGLTVPLSLMCGDPEAWPCPVIPFAVNVVQY  302 (444)
T ss_pred             CCcc-cCCCC---CCCCCCCCHHHHHHHHHHHHhcCCC-hhhccCCCCCchhhhhHHHhCCcccCCCCCeEEEEecCCCC
Confidence            2565 33211   1147899999999999999999996 778899999999999999999995   4999999999885 


Q ss_pred             ---CHHHHHHHHHHhccccc------CCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHc
Q 025580          190 ---TGTYHYNIGKALAPLKE------EGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLE  248 (250)
Q Consensus       190 ---~~~~~~~LG~aL~~l~d------erVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~  248 (250)
                         ++++||+|||+|+++++      +||+|||||++||||...+.     ..|++|||+|+++.+++
T Consensus       303 Plps~~R~~~LG~AL~~lres~~~D~erVlIIGSGGLSHnL~~~~~-----g~in~eFD~~~ld~L~~  365 (444)
T PRK13372        303 PVPSGRRCYELGQAIRRAIDKWDADPLNVQIWGTGGMSHQLQGPRA-----GLINEEFDNAFLDHLIA  365 (444)
T ss_pred             CCCCHHHHHHHHHHHHHHHhhcccccCCEEEEecCcccCCCCCCCC-----ccchHHHHHHHHHHHHh
Confidence               89999999999999987      99999999999999975432     36899999999999985

>PRK13367 protocatechuate 4,5-dioxygenase; Provisional

Probab=100.00  E-value=2.1e-36  Score=286.11  Aligned_cols=188  Identities=21%  Similarity=0.359  Sum_probs=149.6

Q ss_pred             ccccceEEEEcCCCCCCCCC----CC-h----hHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----C--CeEEecCCC
Q 025580           48 RLSVMDTFFISHGSPTLSID----ES-L----PARGFLQAWQAKVFSQRPNSILVISAHWDTD-----F--PSVNVVQRN  111 (250)
Q Consensus        48 ~~~~~p~~fisHGsP~l~~~----~~-~----~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-----~--~~I~~~~~~  111 (250)
                      |+++...++.|| +|.+-..    .+ .    +..++++.+++++++.+||+||+|+++|.+.     .  ++|++++..
T Consensus         1 Ma~iv~g~~~SH-~P~ig~a~~~~~~~~~~~~~v~~~~~~~r~~l~~~~PDvvVv~~nDH~~~Ff~d~~P~F~IG~~~~~   79 (420)
T PRK13367          1 MARIIGGIAVSH-TPTIGFAVDHNKQQDPAWAPIFESFAPLRRWLEEKKPDVLLYIFNDHVTSFFFDHYSAFALGIDEQY   79 (420)
T ss_pred             ChHHHhhhcCCC-CcccccccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhhhcCcccCCCeEEEecccc
Confidence            455556678899 7765432    11 1    5567888999999999999999999976553     2  566666655


Q ss_pred             CccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCC---CCEEEeecCCC
Q 025580          112 DTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMH  188 (250)
Q Consensus       112 ~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~vS~~~~  188 (250)
                      . .|||+|||+++    |+++|+++||++|++.|.++||| ++.+.++++|||+||||++|+|+.+   +||||+++|..
T Consensus        80 ~-~~D~~g~P~~l----y~~~G~peLA~~I~~~L~~~gfD-~a~~~~~~lDHG~~VPL~~l~p~ad~~P~~VVPi~invv  153 (420)
T PRK13367         80 A-VADEGGGPRDL----PPVRGHAALSRHIGASLMADEFD-MSFFQDKPLDHGLFSPLSALLPHDDGWPVQVVPLQVGVL  153 (420)
T ss_pred             c-ccccCCCcccc----CCCCCCHHHHHHHHHHHHhcCCC-eecccCCCCCcchhhhHHHhCCccccCCCceeeeeecee
Confidence            4 79999999987    59999999999999999999995 7888999999999999999999875   66999988753


Q ss_pred             ---C-CHHHHHHHHHHhcccc-----cCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHH
Q 025580          189 ---H-TGTYHYNIGKALAPLK-----EEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLK  243 (250)
Q Consensus       189 ---~-~~~~~~~LG~aL~~l~-----derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~  243 (250)
                         + ++++||+||++|++++     |+||+|||||+|||||..... +....+|+.+|.+|+.
T Consensus       154 q~Plps~~r~~~LG~AL~~aie~~~~d~rVlIIgSGgLSH~L~~~~~-g~~n~~wD~~Fld~L~  216 (420)
T PRK13367        154 QFPIPSARRCYKLGQALRRAIESYPEDLKVAIVATGGLSHQVHGERC-GFNNPEWDAQFLDLLV  216 (420)
T ss_pred             ecCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCCC-CCCCHHHHHHHHHHHH
Confidence               3 6999999999999995     689999999999999965432 3222355555555554

>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=100.00  E-value=2.2e-35  Score=267.99  Aligned_cols=189  Identities=20%  Similarity=0.314  Sum_probs=142.4

Q ss_pred             ccccceEEEEcCCCCCCCCCC-----C----hhHHHHHHHHHHHhhcCCCCEEEEE-eCCCCCC----CCeEEecCCCCc
Q 025580           48 RLSVMDTFFISHGSPTLSIDE-----S----LPARGFLQAWQAKVFSQRPNSILVI-SAHWDTD----FPSVNVVQRNDT  113 (250)
Q Consensus        48 ~~~~~p~~fisHGsP~l~~~~-----~----~~~~~~l~~l~~~l~~~~PdaIVvi-S~Hw~~~----~~~I~~~~~~~~  113 (250)
                      |.++.-++++|| .|.+...+     .    .++.++++++++++++.+||+|||| |+|...+    .+.+.++.....
T Consensus         1 M~~iv~~~~~sH-~P~~~~~~~~~~~~~~~~~~~~~a~~~i~~~v~~~~PDviVvi~sdH~~~f~~d~~p~f~Ig~~~~~   79 (279)
T PRK13365          1 MASIIGGIGTSH-VPTIGVAYDKGKQQDPAWKPLFDGYEPVAAWLAEQKADVLVFFYNDHCTTFFFDLYPTFALGVGERF   79 (279)
T ss_pred             CHHHHhhhcCCC-CcccccccccCcccchHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHHhccccCCceEEEecccc
Confidence            344455678899 77666511     1    3667889999999999999999999 5564332    233444433332


Q ss_pred             -cCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCC---CCEEEeecCCCC
Q 025580          114 -IHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMHH  189 (250)
Q Consensus       114 -~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~vS~~~~~  189 (250)
                       ..|| |.+..-   ..+++||++||++|.+.+.++||+ +....++++|||+||||+||+|+.+   +||||+++|+..
T Consensus        80 ~~~~~-g~~~~~---~~~~~g~~eLA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~~~~~~~~~pvVpi~in~~~  154 (279)
T PRK13365         80 PVADE-GAGLRP---LPPIRGDVQLQAHIAECLVNDEFD-LTVFQDKPIDHGCAAPLPLLWPHVPDWPGTVVPIAINVLQ  154 (279)
T ss_pred             ccccc-ccCCCC---CCCCCCCHHHHHHHHHHHHHcCCC-eeeccCCCCCchhhhHHHHhCCccccCCCCeEEEEEeccc
Confidence             3443 222211   136899999999999999999995 7777889999999999999999766   999999988544


Q ss_pred             ----CHHHHHHHHHHhcccc-----cCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHH
Q 025580          190 ----TGTYHYNIGKALAPLK-----EEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALL  247 (250)
Q Consensus       190 ----~~~~~~~LG~aL~~l~-----derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~  247 (250)
                          ++++||+||++|++++     |+||+|||||+|||||.... +|  +.+  ++||++++++++
T Consensus       155 ~p~~~~~~~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH~l~~~~-~g--~~~--~~~D~~f~~~l~  216 (279)
T PRK13365        155 YPLPTARRCYRLGQALRRAIESYPEDLRVVVVGTGGLSHQIHGER-SG--FNN--TEWDMEFLDRFQ  216 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCC-cc--CCC--HHHHHHHHHHHh
Confidence                6899999999999993     68999999999999998633 33  222  778888888775

>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional

Probab=100.00  E-value=1.4e-34  Score=266.32  Aligned_cols=188  Identities=20%  Similarity=0.289  Sum_probs=157.2

Q ss_pred             EEEEcCCCCCCCCCCC-----hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CCeEEecCCCCccCCCCCCCcc
Q 025580           54 TFFISHGSPTLSIDES-----LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-----FPSVNVVQRNDTIHDFYGFPKQ  123 (250)
Q Consensus        54 ~~fisHGsP~l~~~~~-----~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-----~~~I~~~~~~~~~~Df~gFp~~  123 (250)
                      .++.|| +|.+..++.     .+..++|+++++++++.+||+|||+||||.+.     .+.|+++......+||++|+. 
T Consensus         5 ~~~~sH-~P~~~~~~~~~~~~~~v~~a~~~l~~~l~~~~PD~iVIigpdH~~~f~~d~~P~f~i~~~~~~~gd~~~~~g-   82 (313)
T PRK13370          5 LVCLSH-SPLVGYVDPAQEVLAEVNAVIAAAREFVAAFDPELVVLFAPDHYNGFFYDVMPPFCIGVSATAVGDYGTAAG-   82 (313)
T ss_pred             eeecCC-CCccCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcccccccccCCceEeccCCCcCcccccCCC-
Confidence            477899 887765332     25568899999999999999999999987776     457777777788999999876 


Q ss_pred             cccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCC-CCCCEEEeecCC----CCCHHHHHHHH
Q 025580          124 MYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQM----HHTGTYHYNIG  198 (250)
Q Consensus       124 ~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~-~diPVV~vS~~~----~~~~~~~~~LG  198 (250)
                            +.++|++||++|.+.+.+.|+| +....++++|||+|+||++|+|+ .++|||||++|+    ..++++||+||
T Consensus        83 ------~~~~d~eLA~~i~~~~~~~g~d-~a~~~~~~lDHG~~vPL~~l~~~~~~~pVVpI~vn~~~~p~~s~~r~~~lG  155 (313)
T PRK13370         83 ------PLPVPSDLAEALAEAVLDSGID-VAVSYRMQVDHGFAQPLEFLLGGLDAYPVIPVFINSVAAPLPPFRRVRLLG  155 (313)
T ss_pred             ------CCCCCHHHHHHHHHHhHhcCCC-hhhcCCcCCCEeHHHHHHHhcCCCCCceEEEEeecCCCCCcCCHHHHHHHH
Confidence                  4688999999999999999996 77778999999999999999997 459999999985    45789999999


Q ss_pred             HHhcccc---cCCeEEEEecCCcccCcccc-------------------------------------c-CCCCCChhHHH
Q 025580          199 KALAPLK---EEGVLIIGSGSATHNLRALQ-------------------------------------F-ESSSISSWALE  237 (250)
Q Consensus       199 ~aL~~l~---derVlIIgSG~lSHnL~~~~-------------------------------------~-~~~~~~~~a~e  237 (250)
                      ++|+++.   ++||+|||||||||++....                                     + +.+++.|.+++
T Consensus       156 ~aI~~ai~~~d~rVlvIaSGdLSH~~~~~~~~~~d~~~~erl~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~p~~~~  235 (313)
T PRK13370        156 EAVGRFLATLDKRVLFLGSGGLSHDPPVPELATADPEVRERLIAGRNPTPEERAARQQRVIAAARIFAAGQSALHPLNPE  235 (313)
T ss_pred             HHHHHHHHhcCCCEEEEEeCCCcCCCchHhHhhccHHHHHHHHccCCccHHHHHHHHhhHHhhhhhcccCcccCCCCCHH
Confidence            9988863   78999999999999842111                                     1 12456799999


Q ss_pred             HHHHHHHHHHcCC
Q 025580          238 FDNWLKDALLEGR  250 (250)
Q Consensus       238 FD~~v~~~i~~Gd  250 (250)
                      ||+++++.+++||
T Consensus       236 ~D~~~l~~l~~gd  248 (313)
T PRK13370        236 WDRAFLDLLESGD  248 (313)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999999987

>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate

Probab=100.00  E-value=3.1e-34  Score=263.81  Aligned_cols=189  Identities=22%  Similarity=0.307  Sum_probs=156.3

Q ss_pred             eEEEEcCCCCCCCCCCC-----hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CCeEEecCCCCccCCCCCCCc
Q 025580           53 DTFFISHGSPTLSIDES-----LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-----FPSVNVVQRNDTIHDFYGFPK  122 (250)
Q Consensus        53 p~~fisHGsP~l~~~~~-----~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-----~~~I~~~~~~~~~~Df~gFp~  122 (250)
                      -+++.|| +|.+....+     .+..++++++++++++.+||+||||||||...     .++|+++......+||.+|+.
T Consensus         4 ~~~~~sH-~p~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~PD~iVIigphH~~~f~~~~~p~f~i~~a~~~~gd~~~p~g   82 (310)
T cd07365           4 ALICMSH-SPLLGFNDPAPEVVAEVDAAFAAARAFVAAFDPELVVLFAPDHYNGFFYDLMPPFCIGTAATAVGDYGTLAG   82 (310)
T ss_pred             eeeeeCC-CcccCCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccCCceEeeccCccccccccCCC
Confidence            3588999 876654332     25568899999999999999999999998874     247777777788999999977


Q ss_pred             ccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCC-CCCCEEEeecCCC----CCHHHHHHH
Q 025580          123 QMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQMH----HTGTYHYNI  197 (250)
Q Consensus       123 ~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~-~diPVV~vS~~~~----~~~~~~~~L  197 (250)
                             +.++|++||++|.+.+.+.||| +....++++|||+||||+||++. .++|||||++|..    .++++||+|
T Consensus        83 -------~~~~d~eLA~~L~~~~~~~g~d-~a~~~~~~lDHg~~VPL~fL~~~~~~~pVVPI~vn~~~~P~~s~~r~~~l  154 (310)
T cd07365          83 -------PLNVPRDLAEDLARHVLDSGID-VAISHRMQVDHGFTQPLEELFGGLDRYPVIPIFVNSVAPPLAPMRRARAL  154 (310)
T ss_pred             -------CCCCCHHHHHHHHHhhhhcCCC-hhhccCCCCCcchHhhHHHHhCCCCCCeEEEEEecCCCCCCCCHHHHHHH
Confidence                   4568999999999999999995 77778899999999999999987 4699999999864    567999999


Q ss_pred             HHHhcccc---cCCeEEEEecCCcccCcccc--------------------------------------cCCCCCChhHH
Q 025580          198 GKALAPLK---EEGVLIIGSGSATHNLRALQ--------------------------------------FESSSISSWAL  236 (250)
Q Consensus       198 G~aL~~l~---derVlIIgSG~lSHnL~~~~--------------------------------------~~~~~~~~~a~  236 (250)
                      |++|+++.   ++||+|||||||||++....                                      .+.+++.|.++
T Consensus       155 G~al~~ai~~~d~rV~VIaSGdLSH~~~~~~~~~~d~~~~~~l~~~d~~~~~~~~~~~~~i~~~~~~~~~gp~~~~p~~~  234 (310)
T cd07365         155 GEAVGRFLAKLDKRVLFLGSGGLSHDPPVPQLATAPPEVAERLIAGRNPTPEARAARQQRVIAAAKAFAAGDSTLMPLNP  234 (310)
T ss_pred             HHHHHHHHHhcCCCEEEEEcCcccCCCchhhhhcccHHHHHHHHhcccchHHHHHHHHhhhhhhhhhcccCcccCCCCCH
Confidence            99999973   57999999999999941111                                      12234678999


Q ss_pred             HHHHHHHHHHHcCC
Q 025580          237 EFDNWLKDALLEGR  250 (250)
Q Consensus       237 eFD~~v~~~i~~Gd  250 (250)
                      +||+++++++++||
T Consensus       235 ~fD~~~l~~~~~gd  248 (310)
T cd07365         235 EWDRAFLDLLASGD  248 (310)
T ss_pred             HHHHHHHHHHHcCC
Confidence            99999999999987

2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca

>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate

Probab=100.00  E-value=3.8e-33  Score=258.17  Aligned_cols=167  Identities=19%  Similarity=0.227  Sum_probs=138.0

Q ss_pred             hHHHHHHHHHHHhhcCCCCEEEEEeCCCC-CC----CCeEEecCCCCccCCCCCC------Cc------ccccccCCCCC
Q 025580           71 PARGFLQAWQAKVFSQRPNSILVISAHWD-TD----FPSVNVVQRNDTIHDFYGF------PK------QMYDLKYPAPG  133 (250)
Q Consensus        71 ~~~~~l~~l~~~l~~~~PdaIVviS~Hw~-~~----~~~I~~~~~~~~~~Df~gF------p~------~~y~~~y~~~G  133 (250)
                      ...++++++++++++.+||+|||||||+. .+    .+.|+++..++..+|+...      |+      ..-+.+++++|
T Consensus        70 ~~~~a~~~~~~~i~~~~PDvlVIispDH~~~f~~~~~P~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  149 (328)
T cd07366          70 RCQAALDRLADFIRAARIDVAVIVGDDQKELFDEALLPAFAIYYGDTITNGPRTREQLDRMPPHEAAAGYAPDEARTYPC  149 (328)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEcCccHhhhccccCCceEEeecceeecChhhccccccccccccccccCCCCCcCCCC
Confidence            55688999999999999999999999654 33    2466666666666665430      00      11235678899


Q ss_pred             CHHHHHHHHHHHHhCCCCcccc----cCCCCcccchhhhhhhhcCCCCCCEEEeecCCCC-----CHHHHHHHHHHhccc
Q 025580          134 APELAKRVKDLLKASGIKHVNE----DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH-----TGTYHYNIGKALAPL  204 (250)
Q Consensus       134 ~~~LA~~i~~~l~~~Gid~~~~----~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~-----~~~~~~~LG~aL~~l  204 (250)
                      +++||++|.+.+.++||| +..    +.++++|||.|+|+.+++|+.++||||||+|...     ++++||+||++|+++
T Consensus       150 d~eLA~~I~~~l~~~G~d-v~~~~~~~~~~~lDHG~~~~l~~~~p~~~iPVVpisin~~~~p~~ps~~r~y~lG~aL~~a  228 (328)
T cd07366         150 HPELARHLIKHTVADGFD-VAALDHLPDTVGIPHAFGFIYRRIMGDLVIPVVPVLINTFYPPNQPSARRCFEFGRAVARA  228 (328)
T ss_pred             CHHHHHHHHHHHHHcCCC-eeeecccCcccCCCcchhhHHHHhcCCCCCcEEEEeecCCCCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999995 654    3345789999999999999999999999998854     679999999999999


Q ss_pred             -----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          205 -----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       205 -----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                           +|+||+|||||+|||||            ++++||+|+++.+++||
T Consensus       229 i~~~~~d~rV~IIaSGgLSH~l------------~~~eFD~~~l~~l~~gD  267 (328)
T cd07366         229 IRSWPGDARVGVIASGGLSHFV------------IDEEFDRRILDALRNRD  267 (328)
T ss_pred             HHhcCCCCCEEEEEeCccccCC------------ChHHHHHHHHHHHHcCC
Confidence                 47999999999999998            46999999999999987

3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.

>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=100.00  E-value=4.3e-33  Score=258.37  Aligned_cols=167  Identities=16%  Similarity=0.196  Sum_probs=140.3

Q ss_pred             hHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CCeEEecCCCCccCCCCCC--------------CcccccccCCC
Q 025580           71 PARGFLQAWQAKVFSQRPNSILVISAHWDTD-----FPSVNVVQRNDTIHDFYGF--------------PKQMYDLKYPA  131 (250)
Q Consensus        71 ~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-----~~~I~~~~~~~~~~Df~gF--------------p~~~y~~~y~~  131 (250)
                      ...++++++++++++.+||+|||||||+...     .+.|+++..+...+|+..|              |...-+.++++
T Consensus        72 ~~~~a~~~~~~~i~~~~PDvlViispdh~~~F~~~~~p~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  151 (335)
T PRK13363         72 ACEAAIERMRDAIEAARIDVAVIVGNDQMELFTTDNNPAFAIYYGETIRNNPASREKLPSLPPGVKAAMPGYMPDAETTY  151 (335)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEcCCchhhcccccCCceEEeecceeccchhhccccccccccccccccccCCCCCcCC
Confidence            5568899999999999999999999998432     3666666666777766554              22333467889


Q ss_pred             CCCHHHHHHHHHHHHhCCCCccc----ccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCC-----HHHHHHHHHHhc
Q 025580          132 PGAPELAKRVKDLLKASGIKHVN----EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHT-----GTYHYNIGKALA  202 (250)
Q Consensus       132 ~G~~~LA~~i~~~l~~~Gid~~~----~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~-----~~~~~~LG~aL~  202 (250)
                      +||++||++|.+.+.++||| +.    .+.++++|||+|+|+++++|+.++|||||++|...+     +++||+||++|+
T Consensus       152 ~gd~eLA~~I~~~l~~~G~d-~~~~~~~~~~~glDHG~~~pl~~l~p~~dipVVpIsl~~~~~P~~~s~~~~~~lG~aL~  230 (335)
T PRK13363        152 PVVPELARHMIRRLVDDGFD-ITALDRLPDGEGEGHAFGFVHRQLMKDNVLPTVPVLVNTFYPPNQPTPRRCIALGRSLR  230 (335)
T ss_pred             CCCHHHHHHHHHHHHHcCCC-eeeecccccccCCCccchhhHHHhcCCCCCcEEEEEeccCCCcCCCCHHHHHHHHHHHH
Confidence            99999999999999999995 65    234567999999999999999999999999987544     599999999999


Q ss_pred             cc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          203 PL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       203 ~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      ++     +|+||+|||||+|||++.            +++||+|++++|++||
T Consensus       231 ~~i~~~~~d~rVlIIaSGdLSH~l~------------~~efD~~~l~~l~~~D  271 (335)
T PRK13363        231 RAIRSWPEDARVAVIASGGLSHFVI------------DEELDRLIIDAIRAKD  271 (335)
T ss_pred             HHHHhcCcCCCEEEEEeCccccCCc------------HHHHHHHHHHHHHcCC
Confidence            98     468999999999999983            5799999999999986

>PRK13373 putative dioxygenase; Provisional

Probab=99.97  E-value=2.8e-31  Score=244.45  Aligned_cols=173  Identities=18%  Similarity=0.219  Sum_probs=132.3

Q ss_pred             ccccceEEEEcCCCCCCC-CCC-C-----hhHHHHHHHHHHHhhcCCCCEEEEEeC-CCCCC----CCeEEecCCCCccC
Q 025580           48 RLSVMDTFFISHGSPTLS-IDE-S-----LPARGFLQAWQAKVFSQRPNSILVISA-HWDTD----FPSVNVVQRNDTIH  115 (250)
Q Consensus        48 ~~~~~p~~fisHGsP~l~-~~~-~-----~~~~~~l~~l~~~l~~~~PdaIVviS~-Hw~~~----~~~I~~~~~~~~~~  115 (250)
                      |++....+++|| +|.+. ..+ .     .+..++++++++++++.+||+||||++ ||..+    .+.++++......+
T Consensus         1 Ma~iv~~~~~SH-sPl~~g~~d~p~~~~~~~v~~a~~~ir~~i~e~kPDVvVv~~nDH~~~Ff~d~mP~F~IG~a~~~~g   79 (344)
T PRK13373          1 MAKIVAGIGMSH-APGALGWPDAPSASVRRRLLQAADRLGRSLDAARPDVIIAFLDDHFENHFRSLMPTVGIGVADSHPG   79 (344)
T ss_pred             ChHHHhhhcCCC-CCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhhhhccccCCceEEEecccccC
Confidence            344444578899 88762 222 1     255688999999999999999999955 66554    24444444445556


Q ss_pred             CCCCCCcc-cccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCC----C
Q 025580          116 DFYGFPKQ-MYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH----T  190 (250)
Q Consensus       116 Df~gFp~~-~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~----~  190 (250)
                      |+.++-.. -....-+++|+++||++|++.+.++||| ++.+.++.+|||+++||.+|+|+.++|||||.+|+..    +
T Consensus        80 ~~~~~g~~~~~~~~~~~~g~~elA~~l~~~l~~~gfD-va~s~~m~vDHg~~vPl~~l~~~~~~pvVPV~vN~~~~P~p~  158 (344)
T PRK13373         80 PATQWLEALRLTRQERFGGAPEIAERLLRSLVADGYD-VARMGEIEYGNNLMVPWKLMAPRSAPAIIPVFTNVFSPPVMP  158 (344)
T ss_pred             CccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCC-eeeeeceeCCcceeeeHHHhCCCCCCCeEEEEEecccCCCCC
Confidence            66532100 0001127799999999999999999996 8889999999999999999999988999999999754    5


Q ss_pred             HHHHHHHHHHhcccc-----cCCeEEEEecCCcccCc
Q 025580          191 GTYHYNIGKALAPLK-----EEGVLIIGSGSATHNLR  222 (250)
Q Consensus       191 ~~~~~~LG~aL~~l~-----derVlIIgSG~lSHnL~  222 (250)
                      .+|||+||++|+++.     |+||+|||||+|||++.
T Consensus       159 ~~R~~~lG~ai~~ai~~~~~d~rV~~~~sGgLSH~p~  195 (344)
T PRK13373        159 YRRAYAFGAALRNAAEALDADLRVAFMATGGMSHWPP  195 (344)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceEEEEecCcccCCCc
Confidence            799999999999982     58999999999999753

>COG3885 Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=1.7e-18  Score=151.41  Aligned_cols=185  Identities=17%  Similarity=0.140  Sum_probs=140.9

Q ss_pred             eEEEEcCCCCCCCCCCC---hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccC
Q 025580           53 DTFFISHGSPTLSIDES---LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKY  129 (250)
Q Consensus        53 p~~fisHGsP~l~~~~~---~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y  129 (250)
                      ..+.++|| +-+.-+++   +.+.++++++++.+  ..++++||||||.......+++.....+.+-++.+-...-+.  
T Consensus         4 giyv~PHg-dEii~~~~~e~~~l~kA~k~i~~~~--~~seT~VvIsPHgi~ldd~iaviys~~l~g~~~~~k~~~i~~--   78 (261)
T COG3885           4 GIYVIPHG-DEIIDPEDEESRKLNKAIKEIASDD--KGSETYVVISPHGIRLDDYIAVIYSEYLSGLPYRTKHHPIRK--   78 (261)
T ss_pred             cEEeccCC-ccccCCchhHHHHHHHHHHHHHccc--CCCceEEEEcCCceeeechhhHHhHHhhcccccccccCcchh--
Confidence            45789996 33333333   35667777777664  339999999999988877776655555555555553333333  


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCccc---c------cCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHH
Q 025580          130 PAPGAPELAKRVKDLLKASGIKHVN---E------DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKA  200 (250)
Q Consensus       130 ~~~G~~~LA~~i~~~l~~~Gid~~~---~------~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~a  200 (250)
                      ....|.+||+.|.+..+.+ | ++.   .      ..+..||||.++||+|+.   ...||.+.-.. ++-++.++||..
T Consensus        79 ey~~dreLa~~I~~~a~g~-~-p~v~it~~~lkg~~s~~~Ld~G~~IPL~Flk---~rrIV~lt~ar-l~~~~l~~Fg~~  152 (261)
T COG3885          79 EYKNDRELADKIYEEAKGQ-F-PLVCITFSILKGNYSRCPLDWGSLIPLYFLK---RRRIVLLTPAR-LSREILVKFGDN  152 (261)
T ss_pred             hhhccHHHHHHHHHHhccC-C-ceEEEechhhcCcCCccccccccccchhhcc---ceeEEEechhh-ccHHHHHHHHHH
Confidence            3366999999999998766 5 332   1      234789999999999994   36788888754 999999999999


Q ss_pred             hcccc---cCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          201 LAPLK---EEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       201 L~~l~---derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      |.++.   +++|.+|.|++.+|...+.+|+|  |.+.+.+||+-+++.+.+||
T Consensus       153 l~~~le~~~~ki~lIiSaD~aHth~edGPYG--Ys~~se~yDk~iv~~lks~n  203 (261)
T COG3885         153 LGKALEEYERKISLIISADHAHTHDEDGPYG--YSEESEEYDKIIVDSLKSGN  203 (261)
T ss_pred             HHHHHHHhhcceEEEEecccccccCCCCCCC--CChhHHHHHHHHHHHhcccC
Confidence            88873   48999999999999999999966  68999999999999999886

>cd07361 MEMO_like Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility

Probab=99.78  E-value=3.5e-18  Score=153.85  Aligned_cols=166  Identities=16%  Similarity=0.128  Sum_probs=125.0

Q ss_pred             eEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccCCCC
Q 025580           53 DTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAP  132 (250)
Q Consensus        53 p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~~  132 (250)
                      -.+.++|.+..-..   .-+..+++.+.    ..+||+|||++|||......+.+.........++           +.+
T Consensus        37 ~~~i~PHagy~ysG---~~aa~ay~~l~----~~~p~~vvilgP~H~~~~~~~~~~~~~~~~TPlG-----------~v~   98 (266)
T cd07361          37 KAIIVPHAGYVYSG---PVAAHAYAALD----PGKPKRVVILGPSHTGYGRGCALSSAGAWETPLG-----------DVP   98 (266)
T ss_pred             eEEEeCCCCccccH---HHHHHHHHHhc----cCCCCEEEEECCCCCCCCCceeeCCCCCeeCCCc-----------CCc
Confidence            36888996644333   12234555554    5799999999999888765555544333222221           567


Q ss_pred             CCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCC-CCCCEEEeecCCCCCHHHHHHHHHHhccc-ccCCeE
Q 025580          133 GAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHHTGTYHYNIGKALAPL-KEEGVL  210 (250)
Q Consensus       133 G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~-~diPVV~vS~~~~~~~~~~~~LG~aL~~l-~derVl  210 (250)
                      .|.+++++|.+..   +++ .........|||+.|||.|+... .++|||||.+ ...++++++++|++|+++ .+++++
T Consensus        99 vd~~l~~~L~~~~---~~~-~~~~~~~~~EHs~EvqLpfLq~~~~~~~iVPi~v-g~~~~~~~~~~g~~l~~~~~~~~~~  173 (266)
T cd07361          99 VDRELVEELLKLG---GFI-VDDELAHEEEHSLEVQLPFLQYLLPDFKIVPILV-GDQSPEAAEALAEALSKYLLDPDTL  173 (266)
T ss_pred             cCHHHHHHHHhcC---Ccc-ccCcchhhhhceeeeHHHHHHHHcCCCeEEEEEe-CCCCHHHHHHHHHHHHHHhcCCCeE
Confidence            7999999987654   552 22235677999999999997443 4899999999 567999999999999997 579999


Q ss_pred             EEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          211 IIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       211 IIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      ||+|||+||++..         +.+++||+.+++.|+++|
T Consensus       174 iV~SsDlSH~~~~---------~~a~~~D~~~i~~i~~~d  204 (266)
T cd07361         174 IVISSDFSHYGPR---------ESAERLDRKAIEAILALD  204 (266)
T ss_pred             EEEeCCCCCcCCH---------HHHHHHHHHHHHHHHcCC
Confidence            9999999998755         669999999999999886

This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentia

>PRK00782 hypothetical protein; Provisional

Probab=99.60  E-value=1.7e-14  Score=130.34  Aligned_cols=160  Identities=19%  Similarity=0.174  Sum_probs=114.3

Q ss_pred             EEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccCCCCC
Q 025580           54 TFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPG  133 (250)
Q Consensus        54 ~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~~G  133 (250)
                      .+.++|-+-.-..   .-+..+++.+      ..||+|||++|||......+.+....     | .-|=.      +.+.
T Consensus        39 ~ii~PHAGy~ySG---~~aa~ay~~l------~~p~~vvilGp~H~~~~~~~av~~~~-----~-~TPlG------~v~v   97 (267)
T PRK00782         39 GAVVPHAGYVYSG---RTAARVYAAL------PEAETFVIIGPNHTGLGSPVAVSPEG-----W-KTPLG------DVEV   97 (267)
T ss_pred             EEEeCCCCCcccH---HHHHHHHHhc------CCCCEEEEECCCCCCCCCCeEEecCc-----c-cCCCc------CCcC
Confidence            5778995532222   1122334433      34999999999888877766664322     1 11222      5677


Q ss_pred             CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCC--CCCCEEEeecCCCCCHHHHHHHHHHhcccc---cCC
Q 025580          134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE--ADIPVCQLSVQMHHTGTYHYNIGKALAPLK---EEG  208 (250)
Q Consensus       134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~--~diPVV~vS~~~~~~~~~~~~LG~aL~~l~---der  208 (250)
                      |.+++++|...+    +.  ..+.....||++-|+|-|+..-  .++|||||.+ ...++++++++|++|+++.   +++
T Consensus        98 D~~l~~~L~~~~----~~--~~~~ah~~EHSiEvqlPFLq~~~~~~~~iVPI~v-g~~~~~~~~~lg~~L~~~~~~~~~~  170 (267)
T PRK00782         98 DEELAKALASGI----ID--LDELAHKYEHSIEVQLPFLQYLFGKDFKIVPICL-GMQDEETAREVGEAIAEAIEELGKK  170 (267)
T ss_pred             CHHHHHHHHHhh----hc--cchhhhhhhceEEecHHHhhHhhcCCCeEEEEEc-CCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            999999997221    11  1223456899999999665432  4899999998 5788999999999999862   578


Q ss_pred             eEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          209 VLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       209 VlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      ++||+|||+||+..         .+.+++||+.+.+.|+++|
T Consensus       171 vliIaSsDlSH~~~---------~~~a~~~D~~~i~~I~~~d  203 (267)
T PRK00782        171 VVVIASSDFTHYEP---------AERAKEKDMILIEAILDLD  203 (267)
T ss_pred             EEEEEeCCCcCcCC---------HHHHHHHHHHHHHHHHcCC
Confidence            99999999999753         3678999999999999987

>COG1355 Predicted dioxygenase [General function prediction only]

Probab=98.50  E-value=5.6e-06  Score=75.19  Aligned_cols=166  Identities=19%  Similarity=0.221  Sum_probs=110.3

Q ss_pred             ceEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccCCC
Q 025580           52 MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPA  131 (250)
Q Consensus        52 ~p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~  131 (250)
                      ...+.++|-+  ..+-.. -+...+..+.+    .+||+||+++|.|.-.+..+.+...    ++|.- |  +=    +.
T Consensus        46 ~~~~v~PHAG--y~ySG~-taa~~y~~l~~----~~~~~vVIlGPnHtg~g~~vsv~~~----g~w~T-P--LG----~v  107 (279)
T COG1355          46 AIGIVVPHAG--YRYSGP-TAAHVYSALDE----GEPDTVVILGPNHTGLGSPVSVSPE----GEWET-P--LG----DV  107 (279)
T ss_pred             ceEEEcCCCC--cEecch-hHHHHHHHhhc----CCCCEEEEECCCCCCCCCceEEecC----Ccccc-C--CC----Ce
Confidence            4467778833  222121 11223444332    7999999999966666666655321    11110 1  11    44


Q ss_pred             CCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhh---hhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccc-cC
Q 025580          132 PGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPL---MLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLK-EE  207 (250)
Q Consensus       132 ~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL---~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~-de  207 (250)
                      ..|.|+++.|.+.   .++. ........-.|+.=|=|   .++|++ +..||||.+ ...+.+-..++|+++.++. |.
T Consensus       108 ~vD~e~~~~l~~~---~~~~-~~D~~ah~~EHSiEvQlPFLqy~f~~-~fKIVPi~m-~~q~~~~a~~ig~~i~k~i~e~  181 (279)
T COG1355         108 KVDSELAEELVKH---SGII-DLDELAHLYEHSIEVQLPFLQYLFGD-EFKIVPICM-GMQDKEVARDIGRAIAKVIKEL  181 (279)
T ss_pred             eeCHHHHHHHHHh---cCCC-CchhhhhhhhceEEeehHHHHHHccC-CcEEEeEEE-ecccHHHHHHHHHHHHHHHhhc
Confidence            5599999888765   4552 11223345568876543   445665 899999999 7788999999999999984 44


Q ss_pred             -CeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          208 -GVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       208 -rVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                       +++||+|=|++|..         +....+++|+.+.++|+++|
T Consensus       182 ~~~liIaSSDf~HYe---------p~~~~~~~D~~~I~~I~~~d  216 (279)
T COG1355         182 GDALIIASSDFTHYE---------PQDIVRRKDRILIKAILALD  216 (279)
T ss_pred             CCeEEEEecCccccC---------chhhhhhhHHHHHHHHHhcC
Confidence             59999999999983         24568999999999999875

>PF01875 Memo: Memo-like protein; InterPro: IPR002737 This entry contains proteins from all branches of life

Probab=98.39  E-value=5.7e-07  Score=81.84  Aligned_cols=149  Identities=19%  Similarity=0.246  Sum_probs=84.3

Q ss_pred             hcCCCCEEEEEeC-CCCCCCCeEEecCCCCccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcc
Q 025580           84 FSQRPNSILVISA-HWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLD  162 (250)
Q Consensus        84 ~~~~PdaIVviS~-Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lD  162 (250)
                      ...+||.||+++| |+. ....+.+... .   +| .-|=.      +.+.|.+++++|.+....  +  ...+....-+
T Consensus        58 ~~~~~~~vvilGpsH~~-~~~~~~~~~~-~---~~-~TPlG------~v~vD~e~~~~L~~~~~~--~--~~~~~~h~~E  121 (276)
T PF01875_consen   58 KESKPKRVVILGPSHTG-YGDGIAVSPF-D---SW-ETPLG------EVPVDSELAEELAKNFPF--F--EFDDEAHEEE  121 (276)
T ss_dssp             -TTT--EEEEEEE-SSS---SSEEE-SS-S---EE---SS--------EEB-HHHHHHHHHTT-E-----EE--HHHHH-
T ss_pred             hhcCCCEEEEECCCccC-CCCCeEeccC-C---eE-ECCCc------ccccCHHHHHHHHhcCCC--c--ccchhhcccc
Confidence            3478999999997 554 3344444321 1   11 11222      455688888887765321  2  1122233568


Q ss_pred             cchhhhhhh---hcCC-CCCCEEEeecCCCCCHHHHHHHHHHhccc-ccCCeEEEEecCCcccCcccccCCCCCChhHHH
Q 025580          163 HGAWVPLML---MYPE-ADIPVCQLSVQMHHTGTYHYNIGKALAPL-KEEGVLIIGSGSATHNLRALQFESSSISSWALE  237 (250)
Q Consensus       163 HG~~vPL~~---l~p~-~diPVV~vS~~~~~~~~~~~~LG~aL~~l-~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~e  237 (250)
                      |..=|-|=|   .+|+ .+++||||.+ ...+.+.+.++|++|.++ +|++++||+|-|+||.....+... ...+.+++
T Consensus       122 HSlEvqlPFLq~~~~~~~~~~IVPI~v-g~~~~~~~~~~a~~L~~~~~~~~~liV~SsD~sHyg~rfg~~~-~~~~~~~~  199 (276)
T PF01875_consen  122 HSLEVQLPFLQYLFPDRRDFKIVPILV-GDQSPETAKELAEALAEYLKDEGTLIVASSDFSHYGPRFGDAP-KPEEIAEK  199 (276)
T ss_dssp             -TTGGGHHHHHHHTGGGTS-EEEEEEE--S--HHHHHHHHHHHHHHHTSTTEEEEEE----EEBGGGT--G-GGSSHHHH
T ss_pred             CcEEEHHHHHHHHhccCCceEEEEEEe-cCCCHHHHHHHHHHHHHHHcCCCEEEEEeCccccccccccCCC-CCHHHHHH
Confidence            988887655   4677 6799999998 667888899999999997 467899999999999986655211 12344444


Q ss_pred             ---HHHHHHHHHHcCC
Q 025580          238 ---FDNWLKDALLEGR  250 (250)
Q Consensus       238 ---FD~~v~~~i~~Gd  250 (250)
                         .|+...+.|+++|
T Consensus       200 ~~~~D~~~i~~i~~~d  215 (276)
T PF01875_consen  200 IEALDREAIEAIEALD  215 (276)
T ss_dssp             HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHccC
Confidence               4999999999876

The molecular function of these proteins are unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family []. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton [].; PDB: 3BD0_C 3BCZ_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	250
2pw6_A	271	Crystal Structure Of Uncharacterized Protein Jw3007		1e-34

>pdb|2PW6|A Chain A, Crystal Structure Of Uncharacterized Protein Jw3007 From Escherichia Coli K12 Length = 271

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 114/194 (58%), Gaps = 8/194 (4%)
Query: 55  FFISHGSPTLSIDESLPARGFLQAWQAKVFS-QRPNSILVISAHWDTDFPSVNVVQRNDT 113
            F+ HGSP   ++++L    + ++WQ    +  RP +I+V+SAHW T    V   +   T
Sbjct: 18  LFLGHGSPXNVLEDNL----YTRSWQKLGXTLPRPQAIVVVSAHWFTRGTGVTAXETPPT 73
Query: 114 IHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMY 173
           IHDF GFP+ +YD  YPAPG+P LA+R+ +LL    I    +    G DHG+W  L+  Y
Sbjct: 74  IHDFGGFPQALYDTHYPAPGSPALAQRLVELLAP--IPVTLDKEAWGFDHGSWGVLIKXY 131
Query: 174 PEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFES-SSIS 232
           P+ADIP  QLS+       +H+  G+ LA L++EG+ ++ SG+  HNLR +++   SS  
Sbjct: 132 PDADIPXVQLSIDSSKPAAWHFEXGRKLAALRDEGIXLVASGNVVHNLRTVKWHGDSSPY 191
Query: 233 SWALEFDNWLKDAL 246
            WA  F+ ++K  L
Sbjct: 192 PWATSFNEYVKANL 205

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
2pw6_A	271	Uncharacterized protein YGID; JW3007, escherichia	1e-63
1b4u_B	302	LIGA, LIGB, protocatechuate 4,5-dioxygenase; extra	1e-22

>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1 Length = 271

 Score =  199 bits (506), Expect = 1e-63
 Identities = 76/198 (38%), Positives = 117/198 (59%), Gaps = 6/198 (3%)

Query: 52  MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRN 111
           M   F+ HGSP   ++++L  R   Q     +   RP +I+V+SAHW T    V  ++  
Sbjct: 15  MPALFLGHGSPMNVLEDNLYTR-SWQKLGMTL--PRPQAIVVVSAHWFTRGTGVTAMETP 71

Query: 112 DTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLML 171
            TIHDF GFP+ +YD  YPAPG+P LA+R+ +LL    +    +    G DHG+W  L+ 
Sbjct: 72  PTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTL--DKEAWGFDHGSWGVLIK 129

Query: 172 MYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFES-SS 230
           MYP+ADIP+ QLS+       +H+ +G+ LA L++EG++++ SG+  HNLR +++   SS
Sbjct: 130 MYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSS 189

Query: 231 ISSWALEFDNWLKDALLE 248
              WA  F+ ++K  L  
Sbjct: 190 PYPWATSFNEYVKANLTW 207

>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B Length = 302

 Score = 93.4 bits (231), Expect = 1e-22
 Identities = 35/217 (16%), Positives = 67/217 (30%), Gaps = 32/217 (14%)

Query: 55  FFISHGSPTL--SIDESLPARGFLQAWQA---------KVFSQRPNSILVISA-HWDTDF 102
              SH  P L  +I        +               K     P+ ++++   H     
Sbjct: 8   ITSSH-IPALGAAIQTGTSDNDYWGPVFKGYQPIRDWIKQPGNMPDVVILVYNDHASAFD 66

Query: 103 PSVNVVQRNDTIHDFYGFPKQMY-DLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGL 161
            ++           F    +           G P+LA  +   L       +    +  +
Sbjct: 67  MNIIPTFAIGCAETFKPADEGWGPRPVPDVKGHPDLAWHIAQSLILDEF-DMTIMNQMDV 125

Query: 162 DHGAWVPLMLMYPEAD---IPVCQLSV----QMHHTGTYHYNIGKAL-----APLKEEGV 209
           DHG  VPL +++ E +     V    V        +G   + +G ++     +  ++  V
Sbjct: 126 DHGCTVPLSMIFGEPEEWPCKVIPFPVNVVTYPPPSGKRCFALGDSIRAAVESFPEDLNV 185

Query: 210 LIIGSGSATHNLRALQFESSSISSWALEFDNWLKDAL 246
            + G+G  +H L+  +           EFD    D L
Sbjct: 186 HVWGTGGMSHQLQGPRA-----GLINKEFDLNFIDKL 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
2pw6_A	271	Uncharacterized protein YGID; JW3007, escherichia	100.0
3vsj_B	312	2-amino-5-chlorophenol 1,6-dioxygenase beta subun;	100.0
3vsj_A	271	2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU;	100.0
1b4u_B	302	LIGA, LIGB, protocatechuate 4,5-dioxygenase; extra	100.0
3bcz_A	293	Protein MEMO1; alpha/beta structure, peptide bindi	99.54

>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1

Probab=100.00  E-value=4.9e-58  Score=413.22  Aligned_cols=194  Identities=39%  Similarity=0.765  Sum_probs=166.6

Q ss_pred             cceEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccCC
Q 025580           51 VMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYP  130 (250)
Q Consensus        51 ~~p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~  130 (250)
                      ++|++|+|||||++.+++ +++.++|+++++++.  +||+||||||||++..++|++++.++++|||+|||+++|+++|+
T Consensus        14 ~~P~~flsHGsP~~~~~~-~~~~~~l~~l~~~l~--~P~aIvviSaHw~~~~~~V~~~~~~~~i~Df~gfp~~ly~~~y~   90 (271)
T 2pw6_A           14 RMPALFLGHGSPMNVLED-NLYTRSWQKLGMTLP--RPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYP   90 (271)
T ss_dssp             CCCEEEEECC-CCCCSSC-CHHHHHHHHHHHHSC--CCSEEEEEEEEEEESSEEEECCCC-------------CCSCCCC
T ss_pred             cCCEEEECCCCCccCCCc-hHHHHHHHHHHHhCC--CCCEEEEEcCCCCCCceEEEeCCCCCCcCCcCcCCCcCcccccC
Confidence            689999999999999854 578899999999975  99999999999999999999988899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeE
Q 025580          131 APGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVL  210 (250)
Q Consensus       131 ~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVl  210 (250)
                      ++|+++||++|.+.|.++||+ +.. .++++|||+||||++|+|++|+||||||+|..+++++||+|||+|+++||+||+
T Consensus        91 ~~g~peLA~~i~~~l~~~g~~-~~~-~~~glDHG~~vPL~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lrd~~Vl  168 (271)
T 2pw6_A           91 APGSPALAQRLVELLAPIPVT-LDK-EAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIM  168 (271)
T ss_dssp             CCBCHHHHHHHHHHHTTSCEE-EES-SCCCCCHHHHHHHHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGGGTEE
T ss_pred             CCCCHHHHHHHHHHHHhcCCc-ccc-cccCCCcchhhhHHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCcE
Confidence            999999999999999999994 544 789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcccCcccccCC-CCCChhHHHHHHHHHHHHH-cC
Q 025580          211 IIGSGSATHNLRALQFES-SSISSWALEFDNWLKDALL-EG  249 (250)
Q Consensus       211 IIgSG~lSHnL~~~~~~~-~~~~~~a~eFD~~v~~~i~-~G  249 (250)
                      |||||++||||+..++.+ .+..+|+.|||+|++++++ +|
T Consensus       169 IigSG~lsHnL~~~~~~~~~~~~~~~~eFD~~~~~~l~~~g  209 (271)
T 2pw6_A          169 LVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQG  209 (271)
T ss_dssp             EEEEECSSCCTTSCCSSSCCCCCHHHHHHHHHHHTTTTCCS
T ss_pred             EEEeCccccCCCcccccCcCCCCchHHHHHHHHHHHHHhcC
Confidence            999999999999988742 2456999999999999998 76

>3vsj_B 2-amino-5-chlorophenol 1,6-dioxygenase beta subun; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_B 3vsi_B* 3vsg_B*

Probab=100.00  E-value=2.4e-42  Score=316.38  Aligned_cols=196  Identities=18%  Similarity=0.208  Sum_probs=162.5

Q ss_pred             cceEEEEcCCCCCCCC---------CC----ChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecC-CCCccCC
Q 025580           51 VMDTFFISHGSPTLSI---------DE----SLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQ-RNDTIHD  116 (250)
Q Consensus        51 ~~p~~fisHGsP~l~~---------~~----~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~-~~~~~~D  116 (250)
                      +.-.+++||  ||.++         ++    .+++.++|+++++++.+.+||+||||||||++....+.+.. .....+|
T Consensus         5 iv~a~~~~H--~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~PdaIvviS~Hw~~~~~~~~~~~~~~~~~~~   82 (312)
T 3vsj_B            5 IIAGFLAPH--PPHLVYGENPPQNEPRSQGGWEVLRWAYERARERLDAMKPDVLLVHSPHWITSVGHHFLGVPELSGKSV   82 (312)
T ss_dssp             EEEEEECCC--CTHHHHTTCCTTBCSCCSCCCHHHHHHHHHHHHHHHHHCCSEEEEEEEEEEESSSEEEECCSEEEEEEE
T ss_pred             EEEEEECCC--CCeecccccccccCcccchhHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCccCCeEEeccCCCCcccc
Confidence            456778899  55433         11    14678899999999988899999999999999887665532 2234667


Q ss_pred             CCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccc--cCCCCcccchhhhhhhhcCCCCCCEEEeecCC---CCCH
Q 025580          117 FYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNE--DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM---HHTG  191 (250)
Q Consensus       117 f~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~--~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~---~~~~  191 (250)
                      +++||+ .|+++|+++||++||++|.+.+.+.|++ +..  +.++++|||+||||.||+|+.++||||||++.   ..++
T Consensus        83 ~~~f~~-f~~~~y~~~gd~eLA~~i~~~l~~~g~~-~~~~~~~~~~lDHG~~vpL~~l~p~~~~pVVpis~~~~p~~~~~  160 (312)
T 3vsj_B           83 DPIFPN-VFRYDFSLNVDVELAEACAEEGRKAGLV-TKMMRNPKFRVDYGTITTLHLIRPQWDIPVVGISANNSPYYLNT  160 (312)
T ss_dssp             CSSCTT-TCEEEEEEEBCHHHHHHHHHHHHHTTCC-EEEECCTTCCCCHHHHHHHHHHCTTCCSCEEEEEEESHHHHTCH
T ss_pred             ccCCCc-cCcccCCCCCCHHHHHHHHHHHHHcCCc-eeeccCccccCCcchHhHHHHhCCCCCCCEEEEeecCCCCCCCh
Confidence            777764 4689999999999999999999999995 543  67899999999999999999999999999985   4888


Q ss_pred             H----HHHHHHHHhccc---ccCCeEEEEecCCcccCcccccC---C----CCCChhHHHHHHHHHHHHHcCC
Q 025580          192 T----YHYNIGKALAPL---KEEGVLIIGSGSATHNLRALQFE---S----SSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       192 ~----~~~~LG~aL~~l---~derVlIIgSG~lSHnL~~~~~~---~----~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      +    +||+||++|+++   +|+||+|||||++|||++..++.   .    .++.+|+++||+|++++|++||
T Consensus       161 ~~~~~~~~~lG~aL~~~~~~~d~~Vlii~SG~lsH~l~~~~~~~~~~~~~~~~~~~~a~~fD~~~~~~l~~gD  233 (312)
T 3vsj_B          161 KEGMSEMDVLGKATREAIRKTGRKAVLLASNTLSHWHFHEEPTIPEDMSKEYPATMAGYQWDIRMIELMRQGK  233 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCSCCCCCCSCCSSTTCGGGCCCSCHHHHHHHHHHHHHHHHTC
T ss_pred             hhhHHHHHHHHHHHHHHHHhcCCCEEEEEECcccccCCcccccccccccccCCCCHHHHHHHHHHHHHHHcCC
Confidence            8    999999999997   37999999999999999865431   1    2356899999999999999987

>3vsj_A 2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_A 3vsi_A* 3vsg_A*

Probab=100.00  E-value=2e-41  Score=303.62  Aligned_cols=196  Identities=16%  Similarity=0.205  Sum_probs=166.3

Q ss_pred             cceEEEEcCCCCC--CCCCCCh---hHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecC-CCCccCCCCCCCccc
Q 025580           51 VMDTFFISHGSPT--LSIDESL---PARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQ-RNDTIHDFYGFPKQM  124 (250)
Q Consensus        51 ~~p~~fisHGsP~--l~~~~~~---~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~-~~~~~~Df~gFp~~~  124 (250)
                      +.-++++||  ||  +++++..   +++++++++++++.+.+||+||||||||.+....++++. .....+++++|+ .+
T Consensus         3 iv~a~~~pH--~P~~~l~pe~~~~~~~~~a~~~~~~~l~~~~Pd~ivvis~h~~~~~~~~~i~~~~~~~~~~~~~f~-~~   79 (271)
T 3vsj_A            3 VVSAFLVPG--TPLPQLKPEVPSWGQLAAATERAGKALAASRPDVVLVYSTQWLAVLDQQWLTRPRSEGVHVDENWY-EF   79 (271)
T ss_dssp             EEEEEEECC--CSHHHHCTTSHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEESSSEEEECCSEEEEEECCTTTG-GG
T ss_pred             eEEEEEcCC--CCccCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcccccCcEEEeccCCCcccccCCch-hh
Confidence            456789999  66  6666653   566889999999988999999999999999888776643 234567788887 57


Q ss_pred             ccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCcccchhhhhhhhcCCCC-CCEEEeecCCCCCHHHHHHHHHHh
Q 025580          125 YDLKYPAPGAPELAKRVKDLLKASGIKHVN--EDRKRGLDHGAWVPLMLMYPEAD-IPVCQLSVQMHHTGTYHYNIGKAL  201 (250)
Q Consensus       125 y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~--~~~~~~lDHG~~vPL~~l~p~~d-iPVV~vS~~~~~~~~~~~~LG~aL  201 (250)
                      ++++|+++||++||++|.+.+.+.|++ +.  .+.++++|||+||||.||+|+.+ +||||+|++...++++||+||++|
T Consensus        80 g~~~y~~~gd~~la~~i~~~~~~~g~~-~~~~~~~~~~lDHg~~vpl~~l~~~~~~~pvv~i~~~~~~~~~~~~~lG~al  158 (271)
T 3vsj_A           80 GDLAYDIRADTALAEACVTSSPLHGVH-ARGVNYDGFPIDTGTITACTLMGIGTDAFPLVVGSNNLYHSGEITEKLAALA  158 (271)
T ss_dssp             CCEEEEEEBCHHHHHHHHHHHHHTTCC-EEEECCTTCCCCHHHHHHHHHHTCSSSSSCEEEEEEETTCCHHHHHHHHHHH
T ss_pred             ccccccCcCCHHHHHHHHHHHHHCCCc-EEeecCCCCCcchhHHHHHHHHhccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            799999999999999999999999995 53  35789999999999999999976 999999998899999999999999


Q ss_pred             ccc---ccCCeEEEEecCCcccCcccccC---CCCCChhHHHHHHHHHHHHHcCC
Q 025580          202 APL---KEEGVLIIGSGSATHNLRALQFE---SSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       202 ~~l---~derVlIIgSG~lSHnL~~~~~~---~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      +++   +++||+|||||++|||+....+.   ..++.+|+++||+|+.++|++||
T Consensus       159 ~~~~~~~~~~vlii~SGdlsH~l~~~~~~~~~~~~~~~~a~~fD~~~~~~l~~~D  213 (271)
T 3vsj_A          159 VDCAKDQNKRVAVVGVGGLSGSLFREEIDPREDRIANEEDDKWNRRVLKLIEAGD  213 (271)
T ss_dssp             HHHHHHTTCCEEEEEECCSCCCCCSSCCCGGGCCCSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCCEEEEEECccccCCcccCCCCCCCCCCCcchHHHHHHHHHHHHCCC
Confidence            997   37999999999999999644331   12346899999999999999987

>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B

Probab=100.00  E-value=9.2e-40  Score=297.90  Aligned_cols=188  Identities=18%  Similarity=0.228  Sum_probs=153.5

Q ss_pred             ccccceEEEEcCCCCCCCCC-------CC---hhHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCC--C-----CeEEec
Q 025580           48 RLSVMDTFFISHGSPTLSID-------ES---LPARGFLQAWQAKVFS--QRPNSILVISAHWDTD--F-----PSVNVV  108 (250)
Q Consensus        48 ~~~~~p~~fisHGsP~l~~~-------~~---~~~~~~l~~l~~~l~~--~~PdaIVviS~Hw~~~--~-----~~I~~~  108 (250)
                      |.++.-.+++||  ||+++.       ++   .++.++++++++++++  .+||+||||||||.+.  .     ++|+..
T Consensus         1 M~~Iv~~~~~sH--~P~i~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~~~Pd~Ivvis~~H~~~~~~~~~~~~~I~~~   78 (302)
T 1b4u_B            1 MARVTTGITSSH--IPALGAAIQTGTSDNDYWGPVFKGYQPIRDWIKQPGNMPDVVILVYNDHASAFDMNIIPTFAIGCA   78 (302)
T ss_dssp             -CEEEEEEEECC--CHHHHHHHHHTCTTSTTTHHHHHHHHHHHHHHTSTTTSCSEEEEEECCCSSSCCTTEEESBEEECS
T ss_pred             ChHHhEEeECCC--CCcccCccccCCcchhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCcccccccccCCceEEecC
Confidence            555677889999  444431       11   3677889999999987  8999999999955432  2     456666


Q ss_pred             CCCCccCCCCCCCcccccccC-CCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCC---CCEEEee
Q 025580          109 QRNDTIHDFYGFPKQMYDLKY-PAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLS  184 (250)
Q Consensus       109 ~~~~~~~Df~gFp~~~y~~~y-~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~vS  184 (250)
                      +.++ +|||.++|.     +| +++||++||++|.+.+.+.|++ +..+.++++|||+||||.||+|+.|   +||||||
T Consensus        79 ~~~~-~~d~~~G~~-----~~~~~~G~peLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vpL~~l~p~~d~~~ipVVpis  151 (302)
T 1b4u_B           79 ETFK-PADEGWGPR-----PVPDVKGHPDLAWHIAQSLILDEFD-MTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFP  151 (302)
T ss_dssp             SEEC-BCBCSSSBC-----SSCCEECCHHHHHHHHHHHHHTTCC-CEEESSCCBCHHHHHHHHHHHCSCSSCSSEEEEEE
T ss_pred             CCCc-cCcccCCCc-----CCCCCCCCHHHHHHHHHHHHhcCCC-eeccCCcCCCceeeehHHHhcCcccCCcCcEEEEe
Confidence            6566 799865553     57 8999999999999999999995 6656779999999999999999987   9999999


Q ss_pred             cCCCCC----HHHHHHHHHHhccc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580          185 VQMHHT----GTYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       185 ~~~~~~----~~~~~~LG~aL~~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      +|...+    +++||+||++|+++     +|+||+|||||++|||+...+.     ..|+++||+|++++| +||
T Consensus       152 v~~~~~p~~~~~~~~~lG~aL~~~~~~~~~d~~VlIIgSG~lSH~l~~~~~-----g~~~~~fD~~~~~~l-~~d  220 (302)
T 1b4u_B          152 VNVVTYPPPSGKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGPRA-----GLINKEFDLNFIDKL-ISD  220 (302)
T ss_dssp             BCCSSSCCCCHHHHHHHHHHHHHHHHTSSSCCEEEEEEECCSSCCCSSTTT-----TBCCHHHHHHHHHHH-HHC
T ss_pred             ecCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCCCCcC-----ccchHHHHHHHHHHH-ccC
Confidence            987664    69999999999987     5789999999999999986543     258899999999999 765

>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A

Probab=99.54  E-value=9.8e-15  Score=132.11  Aligned_cols=169  Identities=11%  Similarity=0.005  Sum_probs=112.6

Q ss_pred             EEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeC-CCCCCCCeEEecCCCCccCCCCCCCcccccccCCCC
Q 025580           54 TFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISA-HWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAP  132 (250)
Q Consensus        54 ~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~-Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~~  132 (250)
                      ++.++|.+.....   .-+..+++.    +...+||.|||++| |+.... .+.+....    +|.. |-  .    +.+
T Consensus        40 ~iI~PHAGy~ysG---~~aa~ay~~----l~~~~p~~VvilGP~H~~~~~-~~a~~~~~----~~~T-Pl--G----~l~  100 (293)
T 3bcz_A           40 AIIAPHAGYTYCG---SCAAHAYKQ----VDPSITRRIFILGPSHHVPLS-RCALSSVD----IYRT-PL--Y----DLR  100 (293)
T ss_dssp             EEEECCSCHHHHH---HHHHHHHTT----CCTTTCCEEEEEEECSSSCCS-SEEECSCS----EECC-SS--C----CEE
T ss_pred             EEEECCCCccccH---HHHHHHHHH----hccCCCCEEEEECCCCCCCCC-ceEEccCC----ceEC-CC--c----cCC
Confidence            6888995522111   011122333    23468999999999 766553 44443221    1211 22  1    345


Q ss_pred             CCHHHHHHHHHHHHhCCCCccccc-CCCCcccchhhhhhhhcCC-----CCCCEEEeecCCCCCHHHHHHHHHHhcccc-
Q 025580          133 GAPELAKRVKDLLKASGIKHVNED-RKRGLDHGAWVPLMLMYPE-----ADIPVCQLSVQMHHTGTYHYNIGKALAPLK-  205 (250)
Q Consensus       133 G~~~LA~~i~~~l~~~Gid~~~~~-~~~~lDHG~~vPL~~l~p~-----~diPVV~vS~~~~~~~~~~~~LG~aL~~l~-  205 (250)
                      .|.+++++|.+..   .+  ...+ .....+|++-|+|-|+..-     .++|||||.++ ..+++++++||++|+++. 
T Consensus       101 vD~el~~~L~~~~---~~--~~~d~~~~~~EHSlEv~LPfL~~~~~~~~~~~~IVPI~vg-~~~~~~~~~~g~~l~~~~~  174 (293)
T 3bcz_A          101 IDQKIYGELWKTG---MF--ERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVG-ALSESKEQEFGKLFSKYLA  174 (293)
T ss_dssp             BCHHHHHHHHHTS---CE--EECCHHHHHHCCTTGGGHHHHHHHTGGGTTSCEEEEEEEC-CCCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHhcC---Cc--ccccccccchheEEEeeHHHHHHHhCCCCCCceEEEEEcC-CCCHHHHHHHHHHHHHHHh
Confidence            5999998886542   22  1122 2345689999999887532     37999999995 689999999999999974 


Q ss_pred             cCCeEEEEecCCcccCcccccCCCC--------CChhHHHHHHHHHHHHHcCC
Q 025580          206 EEGVLIIGSGSATHNLRALQFESSS--------ISSWALEFDNWLKDALLEGR  250 (250)
Q Consensus       206 derVlIIgSG~lSHnL~~~~~~~~~--------~~~~a~eFD~~v~~~i~~Gd  250 (250)
                      +.+++||+|||+||+-.   ++|+.        ..+++++||+.++++|+++|
T Consensus       175 ~~~~l~V~SsDlsH~g~---~fgy~~~~~~~~~~~~~~~~~D~~~i~~i~~~d  224 (293)
T 3bcz_A          175 DPSNLFVVSSDFCHWGQ---RFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLD  224 (293)
T ss_dssp             CTTEEEEEECCCCEEBG---GGTBCCCCGGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEeCCccCCCC---CCCCCccccccchhHHHHHHHHHHHHHHHHcCC
Confidence            45999999999999822   22322        12668999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	250
d2pw6a1	258	c.56.6.1 (A:14-271) Uncharacterized protein YgiD {	1e-61
d1b4ub_	298	c.56.6.1 (B:) LigB subunit of an aromatic-ring-ope	4e-23

>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD {Escherichia coli [TaxId: 562]} Length = 258

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: LigB-like
family: LigB-like
domain: Uncharacterized protein YgiD
species: Escherichia coli [TaxId: 562]

 Score =  192 bits (489), Expect = 1e-61
 Identities = 76/199 (38%), Positives = 117/199 (58%), Gaps = 6/199 (3%)

Query: 52  MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRN 111
           M   F+ HGSP   ++++L  R   Q     +   RP +I+V+SAHW T    V  ++  
Sbjct: 2   MPALFLGHGSPMNVLEDNLYTR-SWQKLGMTL--PRPQAIVVVSAHWFTRGTGVTAMETP 58

Query: 112 DTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLML 171
            TIHDF GFP+ +YD  YPAPG+P LA+R+ +LL    +    +    G DHG+W  L+ 
Sbjct: 59  PTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTL--DKEAWGFDHGSWGVLIK 116

Query: 172 MYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFES-SS 230
           MYP+ADIP+ QLS+       +H+ +G+ LA L++EG++++ SG+  HNLR +++   SS
Sbjct: 117 MYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSS 176

Query: 231 ISSWALEFDNWLKDALLEG 249
              WA  F+ ++K  L   
Sbjct: 177 PYPWATSFNEYVKANLTWQ 195

>d1b4ub_ c.56.6.1 (B:) LigB subunit of an aromatic-ring-opening dioxygenase LigAB {Pseudomonas paucimobilis [TaxId: 13689]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: LigB-like
family: LigB-like
domain: LigB subunit of an aromatic-ring-opening dioxygenase LigAB
species: Pseudomonas paucimobilis [TaxId: 13689]

 Score = 93.1 bits (231), Expect = 4e-23
 Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 23/191 (12%)

Query: 75  FLQAWQAKVFSQRPNSILVISA-HWDTDFPSVNVVQRNDTIHDFYGFPKQMY--DLKYPA 131
            ++ W  K     P+ ++++   H    F    +        + +    + +        
Sbjct: 38  PIRDW-IKQPGNMPDVVILVYNDHASA-FDMNIIPTFAIGCAETFKPADEGWGPRPVPDV 95

Query: 132 PGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMH 188
            G P+LA  +   L       +    +  +DHG  VPL +++ E +     V    V + 
Sbjct: 96  KGHPDLAWHIAQSLILDEF-DMTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFPVNVV 154

Query: 189 ----HTGTYHYNIGKALAP-----LKEEGVLIIGSGSATHNLRALQFESSSISSWALEFD 239
                +G   + +G ++        ++  V + G+G  +H L+  +    +      EFD
Sbjct: 155 TYPPPSGKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGPRAGLINK-----EFD 209

Query: 240 NWLKDALLEGR 250
               D L+   
Sbjct: 210 LNFIDKLISDP 220

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	250
d2pw6a1	258	Uncharacterized protein YgiD {Escherichia coli [Ta	100.0
d1b4ub_	298	LigB subunit of an aromatic-ring-opening dioxygena	100.0

>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: LigB-like
family: LigB-like
domain: Uncharacterized protein YgiD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.1e-58  Score=409.05  Aligned_cols=194  Identities=38%  Similarity=0.743  Sum_probs=166.1

Q ss_pred             cceEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccCC
Q 025580           51 VMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYP  130 (250)
Q Consensus        51 ~~p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~  130 (250)
                      ++|++|+|||||+++++ +.++.++|+++++++  .|||+||||||||++.++.|++.+.++++|||+|||+++|+++|+
T Consensus         1 r~P~lFisHG~P~~~l~-~~~~~~~l~~lg~~l--~kP~aIvviSaHw~~~~~~v~~~~~~~~~~Df~gFp~~ly~~~y~   77 (258)
T d2pw6a1           1 RMPALFLGHGSPMNVLE-DNLYTRSWQKLGMTL--PRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYP   77 (258)
T ss_dssp             CCCEEEEECC-CCCCSS-CCHHHHHHHHHHHHS--CCCSEEEEEEEEEEESSEEEECCCC-------------CCSCCCC
T ss_pred             CCCeEEeCCCCcccCcC-CcHHHHHHHHHHHhc--CCCCEEEEECCCcCCCCceEEecCCCCccccccccchhhccccCc
Confidence            57999999999999994 467889999999987  589999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeE
Q 025580          131 APGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVL  210 (250)
Q Consensus       131 ~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVl  210 (250)
                      ++|+++||++|.+.+++.|+ ++ .+.+++||||+||||++|+|++|+||||+|++..+++++||+||++|++++||+|+
T Consensus        78 ~~g~~~La~~i~~~l~~~gi-~~-~~~~~glDHG~~vPL~~m~p~~~~pvv~iS~~~~~~~~~~~~lG~aL~~lr~e~vl  155 (258)
T d2pw6a1          78 APGSPALAQRLVELLAPIPV-TL-DKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIM  155 (258)
T ss_dssp             CCBCHHHHHHHHHHHTTSCE-EE-ESSCCCCCHHHHHHHHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGGGTEE
T ss_pred             CCCCHHHHHHHHHHhccCCc-cc-cCCCccccccceeeeeEecCcccceEEEEecCCCCCHHHHHHHHHHHHHHHHCCEE
Confidence            99999999999999999999 44 46779999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcccCcccccCC-CCCChhHHHHHHHHHHHHHcC
Q 025580          211 IIGSGSATHNLRALQFES-SSISSWALEFDNWLKDALLEG  249 (250)
Q Consensus       211 IIgSG~lSHnL~~~~~~~-~~~~~~a~eFD~~v~~~i~~G  249 (250)
                      |||||++||||+..++.+ ..+.+|+.+||+|+.+.++++
T Consensus       156 iIgSG~lsHnL~~~~~~~~~~~~~~a~~Fd~w~~~~l~~~  195 (258)
T d2pw6a1         156 LVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQ  195 (258)
T ss_dssp             EEEEECSSCCTTSCCSSSCCCCCHHHHHHHHHHHTTTTCC
T ss_pred             EEEecccccccccccccCCCCCCcHHHHHHHHHHHHHhcC
Confidence            999999999999887643 345799999999999998865

>d1b4ub_ c.56.6.1 (B:) LigB subunit of an aromatic-ring-opening dioxygenase LigAB {Pseudomonas paucimobilis [TaxId: 13689]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: LigB-like
family: LigB-like
domain: LigB subunit of an aromatic-ring-opening dioxygenase LigAB
species: Pseudomonas paucimobilis [TaxId: 13689]

Probab=100.00  E-value=6e-36  Score=270.41  Aligned_cols=186  Identities=20%  Similarity=0.293  Sum_probs=145.4

Q ss_pred             cceEEEEcCCCCCCCC-------CCC--hhHHHHHHHHHHHhhc--CCCCEEEEEeC-CCCCCC------CeEEecCCCC
Q 025580           51 VMDTFFISHGSPTLSI-------DES--LPARGFLQAWQAKVFS--QRPNSILVISA-HWDTDF------PSVNVVQRND  112 (250)
Q Consensus        51 ~~p~~fisHGsP~l~~-------~~~--~~~~~~l~~l~~~l~~--~~PdaIVviS~-Hw~~~~------~~I~~~~~~~  112 (250)
                      +.-.+..|| +|++..       +++  .++.++++++++++++  .|||+|||+|+ ||..+.      ++|..++.. 
T Consensus         3 Iv~~~~~SH-~P~i~~~~d~~~~~~~~~~~~~~a~~~l~~~l~e~~~kPDviVVvs~DH~~~f~~~~~p~f~ig~~~~~-   80 (298)
T d1b4ub_           3 VTTGITSSH-IPALGAAIQTGTSDNDYWGPVFKGYQPIRDWIKQPGNMPDVVILVYNDHASAFDMNIIPTFAIGCAETF-   80 (298)
T ss_dssp             EEEEEEECC-CHHHHHHHHHTCTTSTTTHHHHHHHHHHHHHHTSTTTSCSEEEEEECCCSSSCCTTEEESBEEECSSEE-
T ss_pred             EEEEEeCCC-cchhccccccCCCCcHHHHHHHHHHHHHHHHHHhhccCcCEEEEEeccHHHHhccccCCcccccccccc-
Confidence            556789999 555411       111  2566889999999975  48999999999 998863      344443322 


Q ss_pred             ccCCCCCC-CcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCC---CCEEEeecCCC
Q 025580          113 TIHDFYGF-PKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMH  188 (250)
Q Consensus       113 ~~~Df~gF-p~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~vS~~~~  188 (250)
                       .....+| +.    ..|+++|+++||++|.+.+.++||| +..+.++++|||+++||+||+|+.+   +|||||++|+.
T Consensus        81 -~~~~~~~~~~----~~~~~~g~~eLA~~i~~~~~~~g~d-~~~~~~~~lDHg~~vPl~~l~~~~~~~~ipvVpi~~n~~  154 (298)
T d1b4ub_          81 -KPADEGWGPR----PVPDVKGHPDLAWHIAQSLILDEFD-MTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFPVNVV  154 (298)
T ss_dssp             -CBCBCSSSBC----SSCCEECCHHHHHHHHHHHHHTTCC-CEEESSCCBCHHHHHHHHHHHCSCSSCSSEEEEEEBCCS
T ss_pred             -cCCccccCcc----CCCCCCCCHHHHHHHHHHHHHCCCC-cccccCcCcccccceeHHHhcCccccCCCceEEEeeecc
Confidence             1112232 22    2368899999999999999999996 7788899999999999999999854   89999999875


Q ss_pred             ----CCHHHHHHHHHHhccc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcC
Q 025580          189 ----HTGTYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEG  249 (250)
Q Consensus       189 ----~~~~~~~~LG~aL~~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~G  249 (250)
                          .+++|||+||++|+++     +|+||+|||||+|||||..++.+     ..++|||+++++.++++
T Consensus       155 ~~p~~s~~r~~~lG~ai~~ai~~~~~d~rV~viaSGgLSH~l~~~~~~-----~~~~efD~~~l~~l~~~  219 (298)
T d1b4ub_         155 TYPPPSGKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGPRAG-----LINKEFDLNFIDKLISD  219 (298)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHTSSSCCEEEEEEECCSSCCCSSTTTT-----BCCHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcccCCCEEEEEeCcccccCCCCCCC-----CCCHHHHHHHHHHHhcC
Confidence                3789999999999996     46899999999999999877652     23589999999999864