Citrus Sinensis ID: 025593

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQQFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRNDCDYFKSALFL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHccccccccEEcccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccccccEEEEEEEEcccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHcccccEEEEcccccccccccccEEEEccccccccHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHcccccccHEHEEEccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEHHccccccccccEEEEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccHHHccccccHHHHHHcccccHHHHHHHcccEEEEEEcccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLmsipgatntVLEAVVPYSRMSMIQLLGqipnqfcsQQTAVNMALLAYNRALklsrpgapvlgvgftgalasthpklgdhrfhlstrtsdrlWVSTVTLskglrtreqEDKVSSHLLLKAMASAckvpatfnseltdsetvDECEQQFSEDQELEQIINGEicfkvypflnetqvfNEERKIIlsgsfnplhdgHLKLLEVATRndcdyfksalfl
Flexible Loop (DISEMBL)
MTDACIRGVVEaihasptqAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHlstrtsdrlwvSTVTlskglrtreqeDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQQFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRNDCDYFKSALFL
Low Complexity Region (SEG)
MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQQFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRNDCDYFKSALFL
Disordered region (IsUnstruct)
***ACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKG************HLLLKAMASACKVPATF**********************LEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRNDCDYFKSAL**
Disordered Region (DISOPRED)
*****IR*VVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALAS**PKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPA***********************ELEQIINGEICFKVYPFLN******EERKIILSGSFNPLHDGHLKLLEVATR****YFKSALFL
Disordered Region (DISEMBL)
MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSEL*****************ELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRNDCDYFKSALFL
Disordered Region (DISPRO)
*TDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQQFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRNDCDYFKSALFL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQQFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRNDCDYFKSALFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
225424077	391	PREDICTED: uncharacterized protein LOC10	0.948	0.606	0.784	1e-106
297737774	390	unnamed protein product [Vitis vinifera]	0.94	0.602	0.787	1e-105
255570653	385	conserved hypothetical protein [Ricinus	0.944	0.612	0.775	1e-104
224108409	385	predicted protein [Populus trichocarpa]	0.948	0.615	0.780	1e-102
217072392	382	unknown [Medicago truncatula]	0.94	0.615	0.726	1e-100
388515057	382	unknown [Medicago truncatula]	0.94	0.615	0.726	1e-100
388512673	382	unknown [Medicago truncatula]	0.94	0.615	0.726	1e-100
449458765	385	PREDICTED: uncharacterized protein LOC10	0.948	0.615	0.708	2e-98
363814308	382	uncharacterized protein LOC100783332 [Gl	0.94	0.615	0.693	1e-97
297814364	388	nucleotidyltransferase [Arabidopsis lyra	0.952	0.613	0.676	2e-90

>gi|225424077|ref|XP_002283677.1| PREDICTED: uncharacterized protein LOC100264619 [Vitis vinifera]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/237 (78%), Positives = 210/237 (88%)

Query: 1   MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQL 60
           M +  +R  VEAIH+SPTQAV+Y++GGASQALG LMS+PGA+NTVLE+VVPYSRMSMIQL
Sbjct: 1   MMEGLLRATVEAIHSSPTQAVLYVSGGASQALGHLMSVPGASNTVLESVVPYSRMSMIQL 60

Query: 61  LGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLST 120
           LG+IP  F SQQTA  MALLAYNRALKLS PG+PVLGVGFTG+LAST PK GDHRFHLST
Sbjct: 61  LGRIPTHFASQQTAEEMALLAYNRALKLSNPGSPVLGVGFTGSLASTRPKRGDHRFHLST 120

Query: 121 RTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQ 180
           RTSDRLW STVTLSKGLRTREQE+KVSS  LLKA+A ACKVPATF SELT+SE  +ECE+
Sbjct: 121 RTSDRLWASTVTLSKGLRTREQEEKVSSLCLLKAIAYACKVPATFVSELTESEVYEECEK 180

Query: 181 QFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVAT 237
           QF+ED+ELEQ+ING+ICFKVYPF +E    N +RKIILSGSFNPLHDGHLKLL+VAT
Sbjct: 181 QFNEDEELEQLINGQICFKVYPFSSEANKSNADRKIILSGSFNPLHDGHLKLLDVAT 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737774|emb|CBI26975.3| unnamed protein product [Vitis vinifera]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/235 (78%), Positives = 209/235 (88%)

Query: 3   DACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLG 62
           +  +R  VEAIH+SPTQAV+Y++GGASQALG LMS+PGA+NTVLE+VVPYSRMSMIQLLG
Sbjct: 2   EGLLRATVEAIHSSPTQAVLYVSGGASQALGHLMSVPGASNTVLESVVPYSRMSMIQLLG 61

Query: 63  QIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRT 122
           +IP  F SQQTA  MALLAYNRALKLS PG+PVLGVGFTG+LAST PK GDHRFHLSTRT
Sbjct: 62  RIPTHFASQQTAEEMALLAYNRALKLSNPGSPVLGVGFTGSLASTRPKRGDHRFHLSTRT 121

Query: 123 SDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQQF 182
           SDRLW STVTLSKGLRTREQE+KVSS  LLKA+A ACKVPATF SELT+SE  +ECE+QF
Sbjct: 122 SDRLWASTVTLSKGLRTREQEEKVSSLCLLKAIAYACKVPATFVSELTESEVYEECEKQF 181

Query: 183 SEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVAT 237
           +ED+ELEQ+ING+ICFKVYPF +E    N +RKIILSGSFNPLHDGHLKLL+VAT
Sbjct: 182 NEDEELEQLINGQICFKVYPFSSEANKSNADRKIILSGSFNPLHDGHLKLLDVAT 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570653|ref|XP_002526281.1| conserved hypothetical protein [Ricinus communis] gi|223534362|gb|EEF36070.1| conserved hypothetical protein [Ricinus communis]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/236 (77%), Positives = 214/236 (90%)

Query: 1   MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQL 60
           MT+A IRGVVEAIHASP QAV+Y++GGASQA+G L+S+PGA+NTVLE+VVPYSRMSMIQL
Sbjct: 1   MTEAWIRGVVEAIHASPIQAVIYLSGGASQAIGWLVSVPGASNTVLESVVPYSRMSMIQL 60

Query: 61  LGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLST 120
           LG+IP+ F S QTA +MALLAY+RALKLS PG+PVLGVGFTG+LAST PKLGDHRFHLST
Sbjct: 61  LGKIPSHFVSLQTAEDMALLAYSRALKLSTPGSPVLGVGFTGSLASTRPKLGDHRFHLST 120

Query: 121 RTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQ 180
           RTSDRLW STVTLSKGLRTREQED +SS +LLKA+A+A KV ATF S+LT+S+  +ECE+
Sbjct: 121 RTSDRLWTSTVTLSKGLRTREQEDALSSQILLKAIANASKVQATFVSDLTESDASNECEK 180

Query: 181 QFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVA 236
           QFSEDQELEQ+ING+ICFKVYPF + +   +EERKIILSGSFNPLH+GHLKL+EVA
Sbjct: 181 QFSEDQELEQLINGQICFKVYPFSSVSHTSSEERKIILSGSFNPLHEGHLKLMEVA 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108409|ref|XP_002314838.1| predicted protein [Populus trichocarpa] gi|222863878|gb|EEF01009.1| predicted protein [Populus trichocarpa]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/237 (78%), Positives = 207/237 (87%)

Query: 1   MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQL 60
           MTDA IRGVVEAIH++P QAV+Y+AGGASQALG L+S+PGA+NTVLEAVVPYSRMS IQL
Sbjct: 1   MTDAWIRGVVEAIHSAPNQAVLYLAGGASQALGWLLSVPGASNTVLEAVVPYSRMSFIQL 60

Query: 61  LGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLST 120
           LG+IP+Q CSQQTA  MALLAYNR LKLS PG PV+GVGFTG+LAS+ PK GDHRF+LST
Sbjct: 61  LGKIPSQHCSQQTAEEMALLAYNRGLKLSSPGYPVVGVGFTGSLASSRPKFGDHRFYLST 120

Query: 121 RTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQ 180
           RTSDRL VSTVTLSKGLRTREQED VSSHLLLKA+A+ACKV A   S LT+S+  DE E 
Sbjct: 121 RTSDRLSVSTVTLSKGLRTREQEDTVSSHLLLKAIANACKVQAASVSHLTESDMSDEHET 180

Query: 181 QFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVAT 237
            FSEDQELEQ+I+G+ICFKVYPF +ET     ERKIILSGSFNPLHDGH+KLLEVAT
Sbjct: 181 HFSEDQELEQLIDGKICFKVYPFSSETYTPTAERKIILSGSFNPLHDGHVKLLEVAT 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072392|gb|ACJ84556.1| unknown [Medicago truncatula]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/238 (72%), Positives = 209/238 (87%), Gaps = 3/238 (1%)

Query: 1   MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQL 60
           MT+ACIR  VEAIH+SP Q V+Y+AGGASQ LG+L+S+PGA+NTVLEAVVPYSRMS+IQL
Sbjct: 1   MTEACIRTAVEAIHSSPYQTVLYLAGGASQILGLLLSVPGASNTVLEAVVPYSRMSLIQL 60

Query: 61  LGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLST 120
           L +IP  FCSQQTA +MALLAYNRALKLS PG+PV+GVGFTG+LAS  PK G+HRF++ST
Sbjct: 61  LAKIPLHFCSQQTADDMALLAYNRALKLSSPGSPVIGVGFTGSLASGRPKHGEHRFYMST 120

Query: 121 RTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQ 180
           RT+DRLW+S VTL+KGLRTRE+ED+VSSHLLLKA+A+ACKVP+    EL++S+  DEC +
Sbjct: 121 RTADRLWISKVTLTKGLRTREEEDRVSSHLLLKAIANACKVPSNDIPELSESDVSDECVK 180

Query: 181 QFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATR 238
           QF+EDQELEQ+ING+ICFK+YPF +E      ERKIIL GSFNPLHDGH+KL+EVATR
Sbjct: 181 QFNEDQELEQLINGQICFKIYPFRSEIPA---ERKIILPGSFNPLHDGHIKLMEVATR 235

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515057|gb|AFK45590.1| unknown [Medicago truncatula]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/238 (72%), Positives = 209/238 (87%), Gaps = 3/238 (1%)

Query: 1   MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQL 60
           MT+ACIR  VEAIH+SP Q V+Y+AGGASQ LG+L+S+PGA+NTVLEAVVPYSRMS+IQL
Sbjct: 1   MTEACIRTAVEAIHSSPYQTVLYLAGGASQILGLLLSVPGASNTVLEAVVPYSRMSLIQL 60

Query: 61  LGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLST 120
           L +IP  FCSQQTA +MALLAYNRALKLS PG+PV+GVGFTG+LAS  PK G+HRF++ST
Sbjct: 61  LAKIPLHFCSQQTADDMALLAYNRALKLSSPGSPVIGVGFTGSLASGRPKHGEHRFYMST 120

Query: 121 RTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQ 180
           RT+DRLW+S VTL+KGLRTRE+ED+VSSHLLLKA+A+ACKVP+    EL++S+  DEC +
Sbjct: 121 RTADRLWISKVTLTKGLRTREEEDRVSSHLLLKAIANACKVPSNDIPELSESDVSDECVK 180

Query: 181 QFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATR 238
           QF+EDQELEQ+ING+ICFK+YPF +E      ERKIIL GSFNPLHDGH+KL+EVATR
Sbjct: 181 QFNEDQELEQLINGQICFKIYPFRSEIPA---ERKIILPGSFNPLHDGHIKLMEVATR 235

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512673|gb|AFK44398.1| unknown [Medicago truncatula]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/238 (72%), Positives = 209/238 (87%), Gaps = 3/238 (1%)

Query: 1   MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQL 60
           MT+ACIR  VEAIH+SP Q V+Y+AGGASQ LG+L+S+PGA+NTVLEAVVPYSRMS+IQL
Sbjct: 1   MTEACIRTAVEAIHSSPYQTVLYLAGGASQILGLLLSVPGASNTVLEAVVPYSRMSLIQL 60

Query: 61  LGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLST 120
           L +IP  FCSQQTA +MALLAYNRALKLS PG+PV+GVGFTG+LAS  PK G+HRF++ST
Sbjct: 61  LAKIPLHFCSQQTADDMALLAYNRALKLSSPGSPVIGVGFTGSLASGRPKHGEHRFYMST 120

Query: 121 RTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQ 180
           RT+DRLW+S VTL+KGLRTRE+ED+VSSHLLLKA+A+ACKVP+    EL++S+  DEC +
Sbjct: 121 RTADRLWISKVTLTKGLRTREEEDRVSSHLLLKAIANACKVPSNDIPELSESDVSDECVK 180

Query: 181 QFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATR 238
           QF+EDQELEQ+ING+ICFK+YPF +E      ERKIIL GSFNPLHDGH+KL+EVATR
Sbjct: 181 QFNEDQELEQLINGQICFKIYPFRSEIPA---ERKIILPGSFNPLHDGHIKLMEVATR 235

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458765|ref|XP_004147117.1| PREDICTED: uncharacterized protein LOC101217608 [Cucumis sativus]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 168/237 (70%), Positives = 205/237 (86%)

Query: 1   MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQL 60
           M D   R   +AIH +PTQAV+Y++GGASQA+G L+S+PGA+ TVLEA+VPYSR SM+QL
Sbjct: 1   MADTWARAAADAIHLTPTQAVLYLSGGASQAIGWLLSVPGASGTVLEALVPYSRNSMVQL 60

Query: 61  LGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLST 120
           LG++P+QFCS +TA  +ALLAYNRALKLSRPG PVLGVGFTG+LA+THPKLG+HR H+ST
Sbjct: 61  LGKVPSQFCSLRTAEELALLAYNRALKLSRPGYPVLGVGFTGSLATTHPKLGEHRMHMST 120

Query: 121 RTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQ 180
           R+S+R WVST+TLSKGLRTREQE+ +S HLLLKA+A ACKVP TF S+LT S+ V+ECE 
Sbjct: 121 RSSNRHWVSTITLSKGLRTREQEEILSGHLLLKAIAKACKVPGTFVSDLTQSDLVEECET 180

Query: 181 QFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVAT 237
            F+ED+ELEQ+I G++CFKVYPFL+ET   + ERKIILSGSFNPLHDGH+KLLE AT
Sbjct: 181 LFTEDEELEQLIKGDVCFKVYPFLSETFTSDAERKIILSGSFNPLHDGHIKLLEAAT 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814308|ref|NP_001242793.1| uncharacterized protein LOC100783332 [Glycine max] gi|255644499|gb|ACU22753.1| unknown [Glycine max]

 Score =  362 bits (928), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 165/238 (69%), Positives = 210/238 (88%), Gaps = 3/238 (1%)

Query: 1   MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQL 60
           MT++CIR  VEAIH+SP QAV+++AGGASQ +G L+S+PGA+NTVLE VVPYS+MS+IQL
Sbjct: 1   MTESCIRSAVEAIHSSPFQAVLHLAGGASQVVGSLLSVPGASNTVLEVVVPYSKMSLIQL 60

Query: 61  LGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLST 120
           LG+IP+QFC QQTA +MALLAYNRALKLS+PG+P +GVGFTG+LAS+ PKLG+HRF++ST
Sbjct: 61  LGKIPSQFCGQQTAEDMALLAYNRALKLSKPGSPAVGVGFTGSLASSRPKLGEHRFYMST 120

Query: 121 RTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQ 180
           RT+D+LW+S+VTL+KGLRTRE+ED+VSSHLL+KA+ +ACKVP      L++S+  DE E 
Sbjct: 121 RTADQLWISSVTLTKGLRTREEEDRVSSHLLIKAIGNACKVPGASVLLLSESDVSDEYET 180

Query: 181 QFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATR 238
           QF+EDQ+LEQ+ING+ICFK+YPF NE    + ERKII+ GSFNPLHDGHLKL++VATR
Sbjct: 181 QFNEDQQLEQLINGQICFKIYPFENE---ISAERKIIMPGSFNPLHDGHLKLMDVATR 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814364|ref|XP_002875065.1| nucleotidyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297320903|gb|EFH51324.1| nucleotidyltransferase [Arabidopsis lyrata subsp. lyrata]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 161/238 (67%), Positives = 197/238 (82%)

Query: 1   MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQL 60
           M +A IR +VEAIH+SPTQAVVY++GGAS ALG LMS+PGA+NT+LEAVVPYSR+SM+QL
Sbjct: 1   MGEAAIRTIVEAIHSSPTQAVVYLSGGASLALGWLMSVPGASNTLLEAVVPYSRVSMVQL 60

Query: 61  LGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLST 120
           LG++P+Q CSQ  A  MALLAYNRALKLS+PG PVLGVGFTG+LA++ PK GDHRF LS 
Sbjct: 61  LGRVPSQHCSQAMAKEMALLAYNRALKLSKPGYPVLGVGFTGSLATSPPKRGDHRFFLSM 120

Query: 121 RTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQ 180
           R S+R+W S+VTL+K LR+RE+EDKVSS  L++AMA AC+V  T +S LT+SE   E E 
Sbjct: 121 RASNRIWESSVTLTKNLRSREEEDKVSSCALIQAMAKACQVSGTLDSGLTESEVPYESET 180

Query: 181 QFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATR 238
            F+E+QELEQ+ING +C K+YPF  E    +E+RKIIL GSFNPLH+GHLKLLEVA R
Sbjct: 181 HFTEEQELEQLINGHLCCKIYPFSGEAHGSDEDRKIILPGSFNPLHEGHLKLLEVAMR 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:2038711	388	AT2G01220 [Arabidopsis thalian	0.944	0.608	0.677	4.1e-81

TAIR|locus:2038711 AT2G01220 [Arabidopsis thaliana (taxid:3702)]

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 160/236 (67%), Positives = 193/236 (81%)

Query:     1 MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQL 60
             M DA IR VVEAIH+SPTQAVVY+ GGAS ALG LMS+PGA+NT+LE+VVPYSR+SM+QL
Sbjct:     1 MGDAAIRTVVEAIHSSPTQAVVYLCGGASLALGWLMSVPGASNTLLESVVPYSRVSMVQL 60

Query:    61 LGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLST 120
             LG++P+Q CSQ  A  MALLAYNRALKLS+PG PVLGVGFTG+L ++ PK GDHRF LS 
Sbjct:    61 LGRVPSQHCSQALAKEMALLAYNRALKLSKPGYPVLGVGFTGSLVTSRPKRGDHRFFLSM 120

Query:   121 RTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQ 180
             R SDR+  S+VTL+K LR+RE+EDKVSS  L++AMA AC+V  T +S LT+SE   E E 
Sbjct:   121 RASDRILESSVTLTKNLRSREEEDKVSSCALIQAMAKACQVSGTLDSGLTESEVPYESET 180

Query:   181 QFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVA 236
              F+E+QELEQ+ING +C K+YPF  E    +E+RKIIL GSFNPLH+GHLKLLEVA
Sbjct:   181 HFTEEQELEQLINGHLCCKIYPFSGEAHGSDEDRKIILPGSFNPLHEGHLKLLEVA 236


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      250       250   0.00080  114 3  11 22  0.43    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  181 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.90u 0.13s 23.03t   Elapsed:  00:00:01
  Total cpu time:  22.90u 0.13s 23.03t   Elapsed:  00:00:01
  Start:  Fri May 10 16:36:12 2013   End:  Fri May 10 16:36:13 2013

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030401001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (391 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	250
PRK00777	153	PRK00777, PRK00777, phosphopantetheine adenylyltra	8e-05
COG1019	158	COG1019, COG1019, Predicted nucleotidyltransferase	7e-04
pfam01467	148	pfam01467, CTP_transf_2, Cytidylyltransferase	0.002
cd02039	143	cd02039, cytidylyltransferase_like, Cytidylyltrans	0.003
PRK07143	279	PRK07143, PRK07143, hypothetical protein; Provisio	0.004
cd02164	143	cd02164, PPAT_CoAS, phosphopantetheine adenylyltra	0.004

>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase; Provisional

 Score = 41.4 bits (98), Expect = 8e-05
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 214 RKIILSGSFNPLHDGHLKLLEVAT 237
            K+ + G+F+PLHDGH  LL  A 
Sbjct: 2   MKVAVGGTFDPLHDGHRALLRKAF 25

Length = 153

>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General function prediction only]

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 214 RKIILSGSFNPLHDGHLKLLEVATR 238
            K+ + G+F+ LHDGH KLLEVA  
Sbjct: 6   MKVAVGGTFDRLHDGHKKLLEVAFE 30

Length = 158

>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 220 GSFNPLHDGHLKLLEVATR 238
           G+F+P+H GHL+LLE A  
Sbjct: 4   GTFDPIHLGHLRLLEQAKE 22

This family includes: Cholinephosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase. Length = 148

>gnl|CDD|185678 cd02039, cytidylyltransferase_like, Cytidylyltransferase-like domain

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 215 KIILSGSFNPLHDGHLKLLEVA 236
             I+ G F P H GHLKL++ A
Sbjct: 1   VGIIIGRFEPFHLGHLKLIKEA 22

Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Length = 143

>gnl|CDD|235946 PRK07143, PRK07143, hypothetical protein; Provisional

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 198 FKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRND 240
            KVY F    + F  E+   + G F   H GHL+L + A  ++
Sbjct: 2   MKVYTF--PLKNFKFEKPTFVLGGFESFHLGHLELFKKAKESN 42

Length = 279

>gnl|CDD|173915 cd02164, PPAT_CoAS, phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 215 KIILSGSFNPLHDGHLKLLEVATR 238
           K+ + G+F+ LHDGH  LL VA  
Sbjct: 1   KVAVGGTFDRLHDGHKILLSVAFL 24

The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD. Length = 143

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
COG1546	162	CinA Uncharacterized protein (competence- and mito	100.0
PRK03661	164	hypothetical protein; Validated	100.0
PRK03657	170	hypothetical protein; Validated	100.0
PF02464	154	CinA: Competence-damaged protein; InterPro: IPR008	100.0
TIGR00199	146	cinA_cterm competence/damage-inducible protein Cin	100.0
PRK00549	414	competence damage-inducible protein A; Provisional	99.97
TIGR00200	413	cinA_nterm competence/damage-inducible protein Cin	99.96
PRK03673	396	hypothetical protein; Provisional	99.77
PRK00962	165	hypothetical protein; Provisional	99.45
TIGR00125	66	cyt_tran_rel cytidyltransferase-related domain. Pr	98.78
TIGR00124	332	cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP	98.48
PRK08099	399	bifunctional DNA-binding transcriptional repressor	98.33
cd02156	105	nt_trans nucleotidyl transferase superfamily. nt_t	98.22
cd02169	297	Citrate_lyase_ligase Citrate lyase ligase. Citrate	98.19
PTZ00308	353	ethanolamine-phosphate cytidylyltransferase; Provi	97.53
PLN02406	418	ethanolamine-phosphate cytidylyltransferase	96.66
TIGR00339	383	sopT ATP sulphurylase. Members of this family also	96.64
TIGR02199	144	rfaE_dom_II rfaE bifunctional protein, domain II.	94.91
COG4016	165	Uncharacterized protein conserved in archaea [Func	94.78
PF06787	160	UPF0254: Uncharacterised protein family (UPF0254);	92.32
KOG3351	293	consensus Predicted nucleotidyltransferase [Genera	90.09
PRK11316	473	bifunctional heptose 7-phosphate kinase/heptose 1-	89.93
PLN02406	418	ethanolamine-phosphate cytidylyltransferase	88.47
PLN02413	294	choline-phosphate cytidylyltransferase	85.54
KOG2803	358	consensus Choline phosphate cytidylyltransferase/P	84.32

>COG1546 CinA Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only]

Probab=100.00  E-value=8e-37  Score=259.46  Aligned_cols=142  Identities=24%  Similarity=0.295  Sum_probs=130.4

Q ss_pred             hHHHHHHHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCC-----CCCCHHHHH
Q 025593            3 DACIRGVVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAV   75 (250)
Q Consensus         3 ~~~~~~~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~-----gaVS~etA~   75 (250)
                      +++++.+++.+.++++++..  |||||++  +++||++||+|++|.+|+|+|||++|+++|||+|+     |+||++||+
T Consensus         7 ~~la~~v~~~L~~~g~tlatAEScTgGll--a~~lt~i~GaS~~f~gg~VtYSneaK~~lLgV~~~tL~~~GaVSe~~a~   84 (162)
T COG1546           7 ESLAEAVGELLKERGLTLATAESCTGGLL--AAALTDIPGASAVFEGGFVTYSNEAKAKLLGVSPETLEEHGAVSEEVAR   84 (162)
T ss_pred             hHHHHHHHHHHHHcCCEEEEEecchhHHH--HHHHHcCCCcHHHhCCceEEEcHHHHHHHhCCCHHHHHHcCCcCHHHHH
Confidence            57889999999999999998  9999985  99999999999999999999999999999999998     999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEEEEEceecCCC---CCCC-CCceEEEEEEeCCeeEEEEEEeCCCchhHHHHHHHHH--H
Q 025593           76 NMALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKL-GDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSS--H  149 (250)
Q Consensus        76 ~MA~~a~~r~~~ls~~~~~digIs~TGiaG~~---~~kp-G~htvyIai~~~~~~~~~~~~l~~~~R~r~~e~~~~s--~  149 (250)
                      +||+++++++       ++||||++||+|||+   ++|| |  +||||++......+++++|.++ |+.+|+.++..  +
T Consensus        85 eMA~Ga~~~~-------~ad~aiaiTGiAGP~Gg~~~kpvG--tV~ig~~~~~~~~~~~~~~~g~-R~~vR~~a~~~Al~  154 (162)
T COG1546          85 EMARGAKERA-------GADIAIAITGIAGPDGGSEGKPVG--TVYIGLAIGGEAITIRVNFGGD-REQVRERAVRAALE  154 (162)
T ss_pred             HHHHHHHHhc-------CCCEEEEEEEeeCCCCCCCCCCce--EEEEEEEcCCceEEEEEEcCCC-HHHHHHHHHHHHHH
Confidence            9999999999       799999999999975   6689 9  9999999955568899999877 99999998854  8


Q ss_pred             HHHHHHH
Q 025593          150 LLLKAMA  156 (250)
Q Consensus       150 lL~~~La  156 (250)
                      +|++.|.
T Consensus       155 ~l~~~L~  161 (162)
T COG1546         155 LLLRLLL  161 (162)
T ss_pred             HHHHHhh
Confidence            8888775

>PRK03661 hypothetical protein; Validated

Probab=100.00  E-value=1.3e-34  Score=246.70  Aligned_cols=143  Identities=17%  Similarity=0.178  Sum_probs=128.8

Q ss_pred             hHHHHHHHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCC-----CCCCHHHHH
Q 025593            3 DACIRGVVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAV   75 (250)
Q Consensus         3 ~~~~~~~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~-----gaVS~etA~   75 (250)
                      +.+.+.+++.|.++++++.+  |||||++  +++|++|||+|++|.||+|+|||++|.++|||+++     |+||+|||+
T Consensus         7 ~~l~~~v~~~L~~~~~tla~AES~TgGli--a~~lt~vpGaS~~f~Gg~VtYs~~~K~~lLgV~~~~i~~~gavS~e~a~   84 (164)
T PRK03661          7 MQLSEQVGQALKARGATVTTAESCTGGWV--AKVITDIAGSSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVV   84 (164)
T ss_pred             HHHHHHHHHHHHHCCCEEEeeHhhhhHHH--HHHHHcCCCchhhcCCceEEEcHHHHHHHcCCCHHHHHhcCCCCHHHHH
Confidence            46788999999999999999  8999975  99999999999999999999999999999999987     999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEEEEEceecCCC---CCCC-CCceEEEEEEeCCe-eEEEEEEeCCCchhHHHHHHHHH--
Q 025593           76 NMALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKL-GDHRFHLSTRTSDR-LWVSTVTLSKGLRTREQEDKVSS--  148 (250)
Q Consensus        76 ~MA~~a~~r~~~ls~~~~~digIs~TGiaG~~---~~kp-G~htvyIai~~~~~-~~~~~~~l~~~~R~r~~e~~~~s--  148 (250)
                      +||+++++++       ++||||++||+|||+   ++|| |  +||||++++++ ..+++++|+++ |..++++++..  
T Consensus        85 ~MA~g~~~~~-------~ad~~ia~TG~AGP~g~~~~kpvG--tv~i~i~~~~~~~~~~~~~~~g~-R~~ir~~~~~~AL  154 (164)
T PRK03661         85 EMAIGALKAA-------RADYAVSISGIAGPDGGSEEKPVG--TVWFGFASASGEGITRRECFSGD-RDAVRRQATAYAL  154 (164)
T ss_pred             HHHHHHHHHc-------CCCEEEEecccCCCCCCCCCCCce--EEEEEEEeCCCcEEEEEEecCCC-HHHHHHHHHHHHH
Confidence            9999999999       799999999999984   4588 9  99999999866 67788888875 99999998844  


Q ss_pred             HHHHHHHHh
Q 025593          149 HLLLKAMAS  157 (250)
Q Consensus       149 ~lL~~~La~  157 (250)
                      ++|++.|.+
T Consensus       155 ~~L~~~l~~  163 (164)
T PRK03661        155 QTLWQQFLQ  163 (164)
T ss_pred             HHHHHHHhh
Confidence            777777654

>PRK03657 hypothetical protein; Validated

Probab=100.00  E-value=2.5e-34  Score=246.49  Aligned_cols=143  Identities=12%  Similarity=0.144  Sum_probs=131.2

Q ss_pred             hHHHHHHHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCC-----CCCCHHHHH
Q 025593            3 DACIRGVVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAV   75 (250)
Q Consensus         3 ~~~~~~~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~-----gaVS~etA~   75 (250)
                      +++.+.+++.+.++.+++.+  |||||++  +++|++|||+|++|.||+|+|||++|.++|||+++     |+||+|||+
T Consensus        13 ~~l~~~v~~~L~~~~~tla~AES~TGGli--as~lt~vpGaS~~f~Gg~VtYs~~~K~~lLgV~~~~i~~~gavS~e~A~   90 (170)
T PRK03657         13 ENLTKALSQRLIADQLRLTTAESCTGGKL--ASALCAAEDTPKFYGAGFVTFTDEAKMKILSVSQQSLERYSAVSEAVVA   90 (170)
T ss_pred             HHHHHHHHHHHHHCCCEEEeeHhhhhHHH--HHHHhcCCCchhhcCCeEEEEcHHHHhHhcCCCHHHHHhcCCCCHHHHH
Confidence            56788999999999999999  8999975  99999999999999999999999999999999987     999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEEEEEceecCCC---CCCC-CCceEEEEEEeCCeeEEEEEEeCCCchhHHHHHHHHH--H
Q 025593           76 NMALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKL-GDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSS--H  149 (250)
Q Consensus        76 ~MA~~a~~r~~~ls~~~~~digIs~TGiaG~~---~~kp-G~htvyIai~~~~~~~~~~~~l~~~~R~r~~e~~~~s--~  149 (250)
                      +||+++++++       ++||||++||+|||+   ++|| |  +||||+++++..++++++|+|+ |+.+++.++..  +
T Consensus        91 ~MA~g~~~~~-------~aDiala~TG~AGP~g~~~~kpvG--tV~iai~~~~~~~~~~~~~~g~-R~~ir~~a~~~al~  160 (170)
T PRK03657         91 EMATGAIERA-------DADISIAISGYGGPEGGEDGTPAG--TVWFAWNIKGQTYTARMHFAGD-CETVLAKAVRFALA  160 (170)
T ss_pred             HHHHHHHHHc-------CCCEEEEeccccCCCCCCCCCCCe--EEEEEEEcCCcEEEEEEecCCC-HHHHHHHHHHHHHH
Confidence            9999999999       799999999999985   3588 9  9999999988888888899877 99999999854  8


Q ss_pred             HHHHHHHh
Q 025593          150 LLLKAMAS  157 (250)
Q Consensus       150 lL~~~La~  157 (250)
                      +|++.|.+
T Consensus       161 ~L~~~l~~  168 (170)
T PRK03657        161 QLLQLLLK  168 (170)
T ss_pred             HHHHHHHh
Confidence            88888876

>PF02464 CinA: Competence-damaged protein; InterPro: IPR008136 CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation []

Probab=100.00  E-value=2.1e-33  Score=236.69  Aligned_cols=141  Identities=25%  Similarity=0.350  Sum_probs=114.7

Q ss_pred             hHHHHHHHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCC-----CCCCHHHHH
Q 025593            3 DACIRGVVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAV   75 (250)
Q Consensus         3 ~~~~~~~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~-----gaVS~etA~   75 (250)
                      |++...+++.|.++++++.+  |||||+.  +++|+++||+|++|.||+|+|+|++|.++|||+++     |+||+|||+
T Consensus         1 ~~l~~~v~~~L~~~~~tia~aES~TGG~l--a~~l~~vpGaS~~f~gg~V~Ys~~~K~~~LgV~~~~i~~~g~vS~e~A~   78 (154)
T PF02464_consen    1 ESLAKAVVKLLKERGLTIATAESCTGGLL--ASWLTSVPGASSVFKGGVVTYSNEAKQKLLGVSPETIEKYGAVSEEVAR   78 (154)
T ss_dssp             HHHHHHHHHHHHHHT--EEEEECTTTTHH--HHHHTTSTTGGGTEEEEEEE-SHHHHHHHH---HHHHHHH-SSSHHHHH
T ss_pred             ChHHHHHHHHHHHCCCEEEeehhhhhHHH--HHHHhcCCCccceeCCEEEEccHHHHhhhcCcCHHHHHHcCCCcHHHHH
Confidence            57889999999999999998  8999975  99999999999999999999999999999999987     999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEEEEEceecCCC---CCCC-CCceEEEEEEeCCeeEEEEEEeCCCchhHHHHHHHHH--H
Q 025593           76 NMALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKL-GDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSS--H  149 (250)
Q Consensus        76 ~MA~~a~~r~~~ls~~~~~digIs~TGiaG~~---~~kp-G~htvyIai~~~~~~~~~~~~l~~~~R~r~~e~~~~s--~  149 (250)
                      +||.++++++       ++||||++||+|||+   .++| |  +||||+..+++++++++.|.++ |+.++++++..  +
T Consensus        79 ~MA~~~~~~~-------~adi~lA~TG~aGP~~~~~~~~~G--~v~iai~~~~~~~~~~~~~~g~-R~~ir~~~~~~al~  148 (154)
T PF02464_consen   79 AMARGARKRF-------GADIGLAITGVAGPGGGTEGKPVG--TVYIAIAYRGGVWVREVQFPGD-REEIRQRAVNQALD  148 (154)
T ss_dssp             HHHHHHHHTS-------S-SEEEEEEE--SSSS--SSS-TT--EEEEEEEETTSEEEEEEE--S--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-------CCCEEEEEEeccCCCCcccCCcCc--eEEEEEEeCCceEEEEEECCCC-HHHHHHHHHHHHHH
Confidence            9999999999       799999999999986   4577 9  9999999999999999999886 99999998843  6


Q ss_pred             HHHHHH
Q 025593          150 LLLKAM  155 (250)
Q Consensus       150 lL~~~L  155 (250)
                      +|++.|
T Consensus       149 ~L~~~L  154 (154)
T PF02464_consen  149 LLRRYL  154 (154)
T ss_dssp             HHH---
T ss_pred             HHHhhC
Confidence            666654

This is a C-terminal region of putative competence-damaged proteins from the cin operon.; PDB: 2A9S_A.

>TIGR00199 cinA_cterm competence/damage-inducible protein CinA C-terminal domain

Probab=100.00  E-value=2.3e-32  Score=229.02  Aligned_cols=128  Identities=21%  Similarity=0.230  Sum_probs=115.5

Q ss_pred             HHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCC-----CCCCHHHHHHHHHHH
Q 025593            9 VVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAVNMALLA   81 (250)
Q Consensus         9 ~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~-----gaVS~etA~~MA~~a   81 (250)
                      +++.|.++++++.+  |||||++  +++|+++||+|++|.||+|+|||++|+++|||+++     |+||+|||++||+++
T Consensus         1 v~~~L~~~~~tla~aES~TgGli--a~~l~~vpGas~~f~gg~VtYs~~~K~~lLgV~~~~i~~~gavS~e~a~~MA~g~   78 (146)
T TIGR00199         1 LSERLKALGLTVATAESCTGGLL--AHALTDISGASKYFGGGVVCYTNQVKINLLGVSQETLARFGAVSEECAAEMALGV   78 (146)
T ss_pred             CHHHHHhCCCcEEEehhhhhHHH--HHHHHcCCChHHHhCCceEEEcHHHHHHHhCCCHHHHHhcCCCCHHHHHHHHHHH
Confidence            36788899999998  8999975  99999999999999999999999999999999887     999999999999999


Q ss_pred             HHHHhhcCCCCCCeEEEEEceecCCC---CCCC-CCceEEEEEEeCCe-eEEEEEEeCCCchhHHHHHHHHH
Q 025593           82 YNRALKLSRPGAPVLGVGFTGALAST---HPKL-GDHRFHLSTRTSDR-LWVSTVTLSKGLRTREQEDKVSS  148 (250)
Q Consensus        82 ~~r~~~ls~~~~~digIs~TGiaG~~---~~kp-G~htvyIai~~~~~-~~~~~~~l~~~~R~r~~e~~~~s  148 (250)
                      ++++       ++||||++||+|||+   ++|| |  +||||++++++ .++++++|.++ |..+++.++..
T Consensus        79 ~~~~-------~adi~ia~TG~AGP~~~~~~~pvG--tv~ial~~~~~~~~~~~~~~~g~-R~~ir~~~~~~  140 (146)
T TIGR00199        79 KERF-------GADVGIAISGIAGPDGGEEEKPGG--TVWFIWIIAKGQAYTAEMHFAGD-RETIRALAVRY  140 (146)
T ss_pred             HHHc-------CCCEEEEeeccCCCCCCCCCCCCe--EEEEEEEeCCCcEEEEEEecCCC-HHHHHHHHHHH
Confidence            9999       799999999999975   4588 9  99999998765 77888888765 99999988843

CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain.

>PRK00549 competence damage-inducible protein A; Provisional

Probab=99.97  E-value=9.8e-30  Score=243.39  Aligned_cols=142  Identities=25%  Similarity=0.288  Sum_probs=128.6

Q ss_pred             hHHHHHHHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCC-----CCCCHHHHH
Q 025593            3 DACIRGVVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAV   75 (250)
Q Consensus         3 ~~~~~~~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~-----gaVS~etA~   75 (250)
                      +++.+.+++.+.+++.++.+  |||||+  ++++|+++||+|++|.||+|+|||++|.++|||+++     |+||+|||+
T Consensus       257 ~~l~~~v~~~L~~~~~tla~aEScTgG~--ia~~lt~vpGaS~~f~gg~V~Ys~~~K~~~LgV~~~~l~~~gavS~e~a~  334 (414)
T PRK00549        257 DSLEEVVAKLLKEKGLTIATAESCTGGL--LAARLTDFPGSSSYFKGGVVTYSNEAKAKLLGVPPETLEEHGAVSEETAE  334 (414)
T ss_pred             ccHHHHHHHHHHhCCCeEEEecchhHHH--HHHHHHhCCChHhhcCCeEEEecHHHHHHhcCCCHHHHhhcCCCCHHHHH
Confidence            46788999999999999998  899997  499999999999999999999999999999999987     999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEEEEEceecCCC---CCCC-CCceEEEEEEeCCe-eEEEEEEeCCCchhHHHHHHHHH--
Q 025593           76 NMALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKL-GDHRFHLSTRTSDR-LWVSTVTLSKGLRTREQEDKVSS--  148 (250)
Q Consensus        76 ~MA~~a~~r~~~ls~~~~~digIs~TGiaG~~---~~kp-G~htvyIai~~~~~-~~~~~~~l~~~~R~r~~e~~~~s--  148 (250)
                      +||+++++++       ++||||++||+|||+   ++|| |  +||||++.+++ +++++++|.++ |+.+++.++..  
T Consensus       335 ~MA~g~~~~~-------~ad~~ia~tG~aGP~g~~~~~pvG--~v~i~i~~~~~~~~~~~~~~~g~-r~~ir~~~~~~aL  404 (414)
T PRK00549        335 EMAEGARKLL-------GADIGISITGVAGPDGGTEEKPVG--TVYIGLATPGGETVVKELILGGS-RSDIRERAVTYAL  404 (414)
T ss_pred             HHHHHHHHHc-------CCCEEEEeccccCCCCCCCCCCCe--eEEEEEEeCCCcEEEEEEecCCC-HHHHHHHHHHHHH
Confidence            9999999998       799999999999974   4688 9  99999999887 88999999876 99998888844  


Q ss_pred             HHHHHHHH
Q 025593          149 HLLLKAMA  156 (250)
Q Consensus       149 ~lL~~~La  156 (250)
                      ++|++.|.
T Consensus       405 ~~l~~~l~  412 (414)
T PRK00549        405 DLLRRALL  412 (414)
T ss_pred             HHHHHHHh
Confidence            77777764

>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain

Probab=99.96  E-value=5.5e-29  Score=238.46  Aligned_cols=141  Identities=13%  Similarity=0.140  Sum_probs=126.5

Q ss_pred             hHHHHHHHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCC-----CCCCHHHHH
Q 025593            3 DACIRGVVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAV   75 (250)
Q Consensus         3 ~~~~~~~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~-----gaVS~etA~   75 (250)
                      +++.+.+++.+.++++++.+  |||||+.  +++|+++||||++|.||+|+|||++|.++|||+++     |+||+|||+
T Consensus       258 ~~l~~~v~~~L~~~~~tla~aES~TgGll--a~~l~~vpgas~~f~Gg~V~Ys~~~K~~~Lgv~~~~l~~~gavS~e~a~  335 (413)
T TIGR00200       258 EGLPAQISRELQERGFTLTLAESFTGGLL--ALQLTDHSGASKLFAGGVPLYANEVKPSQLGVLAETAHWIGAVSANHAA  335 (413)
T ss_pred             hhHHHHHHHHHHhCCCcEEEehhhhhhHH--HHHHHcCCCcHHhhCCcEEEecHHHHHHhcCCCHHHHHHhCcCCHHHHH
Confidence            46788899999999999998  8999975  99999999999999999999999999999999987     999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEEEEEceecCCC--CCCC-CCceEEEEEEeCCeeEEEEEEeCCCchhHHHHHHHHH--HH
Q 025593           76 NMALLAYNRALKLSRPGAPVLGVGFTGALAST--HPKL-GDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSS--HL  150 (250)
Q Consensus        76 ~MA~~a~~r~~~ls~~~~~digIs~TGiaG~~--~~kp-G~htvyIai~~~~~~~~~~~~l~~~~R~r~~e~~~~s--~l  150 (250)
                      +||+++++++       ++||||++||+|||.  .+|| |  +||||++++++..++++.|.++ |..+++.++..  ++
T Consensus       336 ~MA~g~~~~~-------~ad~~ia~TG~AGP~~~~~~pvG--~V~i~~~~~~~~~~~~~~~~g~-R~~~r~~~~~~al~~  405 (413)
T TIGR00200       336 GLALGVSGFE-------GEDLGIALTGPAGPDFAERVRFG--TVRYGLAIRQEVAMHALNMLGR-RLGIRDIAAEHGWIE  405 (413)
T ss_pred             HHHHHHHHHc-------CCCEEEEEecCCCCCCCCCCccc--eEEEEEEcCCceEEEEEecCCC-HHHHHHHHHHHHHHH
Confidence            9999999999       799999999999973  4688 9  9999999887778888888866 99998888743  55


Q ss_pred             HHHHH
Q 025593          151 LLKAM  155 (250)
Q Consensus       151 L~~~L  155 (250)
                      |++.|
T Consensus       406 l~~~l  410 (413)
T TIGR00200       406 VVESL  410 (413)
T ss_pred             HHHHH
Confidence            66655

cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species

>PRK03673 hypothetical protein; Provisional

Probab=99.77  E-value=2.5e-18  Score=164.45  Aligned_cols=121  Identities=13%  Similarity=0.110  Sum_probs=105.3

Q ss_pred             hHHHHHHHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCCCCCCHHHHHHHHHH
Q 025593            3 DACIRGVVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALL   80 (250)
Q Consensus         3 ~~~~~~~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~gaVS~etA~~MA~~   80 (250)
                      +++.+.+++.+.+++.++.+  |||||+.  +++||++   |.+|+||+          +|||+++.-  ++| ++||++
T Consensus       253 ~~l~~~v~~lL~~~~~tla~AEScTGGll--a~~lt~v---S~~f~gg~----------~LgV~~~~l--~~v-~~MA~g  314 (396)
T PRK03673        253 EGLPAQIARRLQERQLSLTLSEQFTAGLL--ALQLSRA---GAPLLAGE----------VLPSQEETL--AQT-AHWATE  314 (396)
T ss_pred             CCHHHHHHHHHHhcCCcEEEEHhhhhHHH--HHHHHhh---hhhhcceE----------EcCCCHHHH--HHH-HHHHHH
Confidence            46778889999999999998  8999975  9999999   99999998          899887621  116 999999


Q ss_pred             HHHHHhhcCCCCCCeEEEEEceecCCCCCCCCCceEEEEEEeCCeeEEEEEEeCCCchhHHH---HHHHHH--HHHHHHH
Q 025593           81 AYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQ---EDKVSS--HLLLKAM  155 (250)
Q Consensus        81 a~~r~~~ls~~~~~digIs~TGiaG~~~~kpG~htvyIai~~~~~~~~~~~~l~~~~R~r~~---e~~~~s--~lL~~~L  155 (250)
                      +++++       ++|+|||+||+||      |  +||||+++++++++++++|+++ |..++   +.+...  +||++.|
T Consensus       315 ~r~~~-------~ad~~ls~TGiAG------G--tV~ial~~~~~~~~~~~~~~g~-R~~ir~~~~~aa~~AL~~lrr~L  378 (396)
T PRK03673        315 RRANH-------FAGLALAVSGLEN------E--HLNFALHTPDGTFAQRVRFSAT-RYSLAIRQEVCAMMALNMLRRWL  378 (396)
T ss_pred             HHHHh-------CCCEEEEeccccC------C--EEEEEEEcCCCEEEEEEEcCCC-hHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999       8999999999999      7  9999999999999999999876 88888   777643  8888888


Q ss_pred             Hh
Q 025593          156 AS  157 (250)
Q Consensus       156 a~  157 (250)
                      ..
T Consensus       379 ~~  380 (396)
T PRK03673        379 NG  380 (396)
T ss_pred             cC
Confidence            74

>PRK00962 hypothetical protein; Provisional

Probab=99.45  E-value=1.5e-12  Score=111.06  Aligned_cols=88  Identities=17%  Similarity=0.140  Sum_probs=76.2

Q ss_pred             EeccchHHHHhHhcCCC-------Cccccc--------ccceeecCHHHHHHHhCCCCC---------CCCC----HHHH
Q 025593           23 YIAGGASQALGMLMSIP-------GATNTV--------LEAVVPYSRMSMIQLLGQIPN---------QFCS----QQTA   74 (250)
Q Consensus        23 s~TGG~~~~~~~Lt~vP-------GsS~~f--------lgg~V~YS~~sK~~lLgv~~~---------gaVS----~etA   74 (250)
                      +||||..  +..|+++|       |+|.+|        .+|.|.||+++|..+|+++|+         +++|    +++|
T Consensus         9 cfTgG~I--aa~Ihavp~gY~~~~gaS~~~~~~~~v~v~gg~fiyS~e~~~~lL~v~~~~p~~~~~~~kaysee~De~vA   86 (165)
T PRK00962          9 CFTHGKI--GREIHKIACGYPELEKKSNYSEINGNVSVVASMFIPSLSGIESLLDIEPPEPDYVYKYIKAYNEENDLLVA   86 (165)
T ss_pred             hhcccHH--HHHHHhcccccccccCcchhhhccccceeeeeEEEecHHHHHHhcCCCCccccchhccccccCcccCHHHH
Confidence            8999975  99999999       999999        999999999999999999654         7899    9999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCeEEEEEceecCCCCCCCCCceEEEEEEeCCeeEE
Q 025593           75 VNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWV  128 (250)
Q Consensus        75 ~~MA~~a~~r~~~ls~~~~~digIs~TGiaG~~~~kpG~htvyIai~~~~~~~~  128 (250)
                      ..||+++++++       ++|||||.|.-.|-     |    =|++-+.+....
T Consensus        87 ~~MA~~vr~~l-------~aDiaI~tTAGiGr-----G----~i~i~~~~~~~~  124 (165)
T PRK00962         87 KLMAEALKNKT-------NCDIAIGTTAGIGR-----G----AICIVTDKNEYL  124 (165)
T ss_pred             HHHHHHHHHHh-------CCCEEEEeccccCC-----c----eEEEEeCCceEE
Confidence            99999999999       79999999976653     3    256666665443

>TIGR00125 cyt_tran_rel cytidyltransferase-related domain

Probab=98.78  E-value=4.7e-09  Score=74.85  Aligned_cols=32  Identities=38%  Similarity=0.562  Sum_probs=27.4

Q ss_pred             EEEecCCCCcCchhHHHHHHHHHhcccCCccceee
Q 025593          215 KIILSGSFNPLHDGHLKLLEVATRNDCDYFKSALF  249 (250)
Q Consensus       215 ~~i~~GsFnP~h~gHl~~~~~a~~~~~~~l~~~~~  249 (250)
                      +++++|+|||+|.||+.++++|.+.  .+ +.+++
T Consensus         1 i~~~~G~Fdp~H~GH~~~l~~a~~~--~~-~~vv~   32 (66)
T TIGR00125         1 RVIFVGTFDPFHLGHLDLLERAKEL--FD-ELIVG   32 (66)
T ss_pred             CEEEcCccCCCCHHHHHHHHHHHHh--CC-EEEEE
Confidence            5899999999999999999999999  44 45543

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.

>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase

Probab=98.48  E-value=8.7e-08  Score=90.20  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=32.6

Q ss_pred             CCeEEEecCCCCcCchhHHHHHHHHHhcccCCccceee
Q 025593          212 EERKIILSGSFNPLHDGHLKLLEVATRNDCDYFKSALF  249 (250)
Q Consensus       212 ~~~~~i~~GsFnP~h~gHl~~~~~a~~~~~~~l~~~~~  249 (250)
                      +.++|+++|||||+|+||++|+++|+++  ++.+.|++
T Consensus       138 ~~~i~~~~g~fdP~t~GH~~li~~A~~~--~d~~~v~v  173 (332)
T TIGR00124       138 GNKIGSIVMNANPFTNGHRYLIEQAARQ--CDWLHLFV  173 (332)
T ss_pred             CCcEEEEEeCcCCCchHHHHHHHHHHHH--CCEEEEEE
Confidence            4689999999999999999999999999  77777765

ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=98.33  E-value=2.4e-07  Score=89.03  Aligned_cols=32  Identities=28%  Similarity=0.511  Sum_probs=29.3

Q ss_pred             eEEEecCCCCcCchhHHHHHHHHHhcccCCccceee
Q 025593          214 RKIILSGSFNPLHDGHLKLLEVATRNDCDYFKSALF  249 (250)
Q Consensus       214 ~~~i~~GsFnP~h~gHl~~~~~a~~~~~~~l~~~~~  249 (250)
                      ++||++|+|||+|.||+.|+++|.++    .|++++
T Consensus        53 ~~~v~~G~FdP~H~GH~~lI~~A~~~----~d~l~v   84 (399)
T PRK08099         53 KIGVVFGKFYPLHTGHIYLIQRACSQ----VDELHI   84 (399)
T ss_pred             cEEEEEEecCCCCHHHHHHHHHHHHH----CCeeEE
Confidence            58999999999999999999999999    677765

>cd02156 nt_trans nucleotidyl transferase superfamily

Probab=98.22  E-value=7.9e-07  Score=69.52  Aligned_cols=26  Identities=35%  Similarity=0.305  Sum_probs=23.7

Q ss_pred             EEEecCCCCcCchhHHHHHHHHHhcc
Q 025593          215 KIILSGSFNPLHDGHLKLLEVATRND  240 (250)
Q Consensus       215 ~~i~~GsFnP~h~gHl~~~~~a~~~~  240 (250)
                      .+++||+|||+|.||+.++++|.+++
T Consensus         1 ~~~~~G~Fdp~H~GH~~l~~~a~~~~   26 (105)
T cd02156           1 KARFPGEPGYLHIGHAKLICRAKGIA   26 (105)
T ss_pred             CEEeCCCCCCCCHHHHHHHHHHHHhC
Confidence            37999999999999999999998874

nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.

>cd02169 Citrate_lyase_ligase Citrate lyase ligase

Probab=98.19  E-value=1.2e-06  Score=81.46  Aligned_cols=38  Identities=18%  Similarity=0.244  Sum_probs=34.7

Q ss_pred             CCCeEEEecCCCCcCchhHHHHHHHHHhcccCCccceeeC
Q 025593          211 NEERKIILSGSFNPLHDGHLKLLEVATRNDCDYFKSALFL  250 (250)
Q Consensus       211 ~~~~~~i~~GsFnP~h~gHl~~~~~a~~~~~~~l~~~~~~  250 (250)
                      +..+++-+.|||||+|+||+.++++|.+.  ++++.|||+
T Consensus       112 ~~~~~~~~~~~FDPiH~GHl~ii~~a~~~--~d~~~V~i~  149 (297)
T cd02169         112 PGKKIAAIVMNANPFTLGHRYLVEKAAAE--NDWVHLFVV  149 (297)
T ss_pred             CCCceEEEEecCCCCchHHHHHHHHHHhh--CCeEEEEEE
Confidence            45688999999999999999999999999  999999874

Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.

>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional

Probab=97.53  E-value=9.9e-05  Score=70.29  Aligned_cols=34  Identities=26%  Similarity=0.459  Sum_probs=29.4

Q ss_pred             CCCeEEEecCCCCcCchhHHHHHHHHHhcccCCcccee
Q 025593          211 NEERKIILSGSFNPLHDGHLKLLEVATRNDCDYFKSAL  248 (250)
Q Consensus       211 ~~~~~~i~~GsFnP~h~gHl~~~~~a~~~~~~~l~~~~  248 (250)
                      .+.++++++|+|||+|.||+.+.++|.++    .|+++
T Consensus       190 ~~~kiv~~~G~FDl~H~GHi~~L~~A~~l----gd~LI  223 (353)
T PTZ00308        190 PGDRIVYVDGSFDLFHIGHIRVLQKAREL----GDYLI  223 (353)
T ss_pred             CCCeEEEECCccCCCCHHHHHHHHHHHHh----CCEEE
Confidence            35689999999999999999999999998    45554

>PLN02406 ethanolamine-phosphate cytidylyltransferase

Probab=96.66  E-value=0.0019  Score=63.05  Aligned_cols=30  Identities=23%  Similarity=0.408  Sum_probs=27.1

Q ss_pred             CCCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593          210 FNEERKIILSGSFNPLHDGHLKLLEVATRN  239 (250)
Q Consensus       210 ~~~~~~~i~~GsFnP~h~gHl~~~~~a~~~  239 (250)
                      ++...++.++|+|||+|.||+.+.++|.++
T Consensus        50 ~~~~~rV~~~G~FDllH~GH~~~L~qAk~l   79 (418)
T PLN02406         50 KKKPVRVYMDGCFDMMHYGHANALRQARAL   79 (418)
T ss_pred             CCCceEEEEcCeeCCCCHHHHHHHHHHHHh
Confidence            455567999999999999999999999998

>TIGR00339 sopT ATP sulphurylase

Probab=96.64  E-value=0.0012  Score=63.62  Aligned_cols=30  Identities=27%  Similarity=0.245  Sum_probs=27.3

Q ss_pred             cCCCCcCchhHHHHHHHHHhcccCCccceeeC
Q 025593          219 SGSFNPLHDGHLKLLEVATRNDCDYFKSALFL  250 (250)
Q Consensus       219 ~GsFnP~h~gHl~~~~~a~~~~~~~l~~~~~~  250 (250)
                      -=||||+|.||+.|++.|++.  +++|++||.
T Consensus       189 fqt~nPiHr~H~~l~~~a~e~--l~~d~lll~  218 (383)
T TIGR00339       189 FQTRNPMHRAHEELTKRAARS--LPNAGVLVH  218 (383)
T ss_pred             eccCCCCchHHHHHHHHHHHH--cCCCeEEEE
Confidence            478999999999999999999  889999873

Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.

>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II

Probab=94.91  E-value=0.025  Score=46.95  Aligned_cols=29  Identities=28%  Similarity=0.519  Sum_probs=25.7

Q ss_pred             CCeEEEecCCCCcCchhHHHHHHHHHhcc
Q 025593          212 EERKIILSGSFNPLHDGHLKLLEVATRND  240 (250)
Q Consensus       212 ~~~~~i~~GsFnP~h~gHl~~~~~a~~~~  240 (250)
                      .+++++.-|.||-+|.||..+.++|.+.+
T Consensus        10 ~~~~v~~~G~FDgvH~GH~~ll~~a~~~~   38 (144)
T TIGR02199        10 GKKIVFTNGCFDILHAGHVSYLQQARALG   38 (144)
T ss_pred             CCCEEEEeCcccccCHHHHHHHHHHHHhC
Confidence            45788999999999999999999998764

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.

>COG4016 Uncharacterized protein conserved in archaea [Function unknown]

Probab=94.78  E-value=0.18  Score=42.72  Aligned_cols=41  Identities=24%  Similarity=0.299  Sum_probs=32.3

Q ss_pred             HHHhCCC-CC--------CCCCH----HHHHHHHHHHHHHHhhcCCCCCCeEEEEEceecC
Q 025593           58 IQLLGQI-PN--------QFCSQ----QTAVNMALLAYNRALKLSRPGAPVLGVGFTGALA  105 (250)
Q Consensus        58 ~~lLgv~-~~--------gaVS~----etA~~MA~~a~~r~~~ls~~~~~digIs~TGiaG  105 (250)
                      .++|+.. |+        ++-|+    ++|.-||++++++.       .+|+|||.|.-.|
T Consensus        58 rslL~i~pPEPd~~~~~aKaY~EE~D~~VA~mMAr~vre~t-------~adigIGtTAGiG  111 (165)
T COG4016          58 RSLLDIKPPEPDFNYKYAKAYSEEKDLEVAKMMARGVREKT-------NADIGIGTTAGIG  111 (165)
T ss_pred             HHHhCCCCCCCCcchhhhhhhhhhhhHHHHHHHHHHHHHHh-------CCCcccccccccC
Confidence            4688874 44        44554    58999999999999       7999999997665

>PF06787 UPF0254: Uncharacterised protein family (UPF0254); InterPro: IPR009625 This is a group of proteins of unknown function

Probab=92.32  E-value=0.7  Score=39.75  Aligned_cols=82  Identities=23%  Similarity=0.270  Sum_probs=52.7

Q ss_pred             CcccccccceeecCHHHHHHHhCCCC-C--------CCC----CHHHHHHHHHHHHHHHhhcCCCCCCeEEEEEceecCC
Q 025593           40 GATNTVLEAVVPYSRMSMIQLLGQIP-N--------QFC----SQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALAS  106 (250)
Q Consensus        40 GsS~~flgg~V~YS~~sK~~lLgv~~-~--------gaV----S~etA~~MA~~a~~r~~~ls~~~~~digIs~TGiaG~  106 (250)
                      |--+++.+-++|= -..-..+|++.| +        ++-    ..++|.-||++++++.       ++|+|||.|.-.|-
T Consensus        40 ~~v~V~asmFiPs-~~g~~slL~i~~pePd~~~~~~K~Y~ee~D~~vA~~mA~avk~~~-------~~dI~IgTTAGiGr  111 (160)
T PF06787_consen   40 GNVSVVASMFIPS-ISGAESLLNIEPPEPDYVIKYIKAYNEENDLEVAKLMAKAVKNKL-------NCDIGIGTTAGIGR  111 (160)
T ss_pred             CcEEEEEeecccc-HHHHHHHhCCCCCCcchhhccceeecccccHHHHHHHHHHHHHHh-------CCCeeeecccccCC
Confidence            4444555555553 334457888843 3        333    4579999999999998       79999999976553


Q ss_pred             CCCCCCCceEEEEEEeCCeeEEEEEEeCCCch
Q 025593          107 THPKLGDHRFHLSTRTSDRLWVSTVTLSKGLR  138 (250)
Q Consensus       107 ~~~kpG~htvyIai~~~~~~~~~~~~l~~~~R  138 (250)
                           |    =|++.+.+...+..-...++.|
T Consensus       112 -----G----aI~I~t~~~~~~~tSdv~adL~  134 (160)
T PF06787_consen  112 -----G----AICIVTDKNEYVFTSDVYADLR  134 (160)
T ss_pred             -----c----eEEEEeCCcEEEEecceehhHh
Confidence                 3    2677777765555444444433

>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]

Probab=90.09  E-value=0.21  Score=46.16  Aligned_cols=29  Identities=45%  Similarity=0.647  Sum_probs=25.4

Q ss_pred             CCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593          211 NEERKIILSGSFNPLHDGHLKLLEVATRN  239 (250)
Q Consensus       211 ~~~~~~i~~GsFnP~h~gHl~~~~~a~~~  239 (250)
                      ....++.+|||||-+|+||-.|...|+.+
T Consensus       140 ~~~~~~alGGTFDrLH~gHKvLLs~aa~l  168 (293)
T KOG3351|consen  140 NKFMVVALGGTFDRLHDGHKVLLSVAAEL  168 (293)
T ss_pred             hcceeEEeccchhhhccchHHHHHHHHHH
Confidence            45567899999999999999999988876

>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

Probab=89.93  E-value=0.28  Score=47.47  Aligned_cols=29  Identities=31%  Similarity=0.576  Sum_probs=26.7

Q ss_pred             CCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593          211 NEERKIILSGSFNPLHDGHLKLLEVATRN  239 (250)
Q Consensus       211 ~~~~~~i~~GsFnP~h~gHl~~~~~a~~~  239 (250)
                      ...++++..|.||.+|.||+.+.++|.+.
T Consensus       338 ~~~~iv~~~G~fD~~H~GH~~~l~~a~~~  366 (473)
T PRK11316        338 RGEKIVMTNGCFDILHAGHVSYLANARKL  366 (473)
T ss_pred             cCCeEEEEecccccCCHHHHHHHHHHHHh
Confidence            45689999999999999999999999988

>PLN02406 ethanolamine-phosphate cytidylyltransferase

Probab=88.47  E-value=0.45  Score=46.71  Aligned_cols=31  Identities=26%  Similarity=0.523  Sum_probs=28.2

Q ss_pred             cCCCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593          209 VFNEERKIILSGSFNPLHDGHLKLLEVATRN  239 (250)
Q Consensus       209 ~~~~~~~~i~~GsFnP~h~gHl~~~~~a~~~  239 (250)
                      ..+..+++...|+||=+|.||+.+.++|.++
T Consensus       247 p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~l  277 (418)
T PLN02406        247 PGPDARIVYIDGAFDLFHAGHVEILRLARAL  277 (418)
T ss_pred             CCCCCeEEEECCeeccCCHHHHHHHHHHHHh
Confidence            3468889999999999999999999999987

>PLN02413 choline-phosphate cytidylyltransferase

Probab=85.54  E-value=1.2  Score=41.94  Aligned_cols=31  Identities=23%  Similarity=0.361  Sum_probs=27.4

Q ss_pred             cCCCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593          209 VFNEERKIILSGSFNPLHDGHLKLLEVATRN  239 (250)
Q Consensus       209 ~~~~~~~~i~~GsFnP~h~gHl~~~~~a~~~  239 (250)
                      .++...+++..|.||=+|.||+.+.++|.++
T Consensus        23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~l   53 (294)
T PLN02413         23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKL   53 (294)
T ss_pred             CCCCceEEEEeCchhhCCHHHHHHHHHHHHh
Confidence            3456677889999999999999999999998

>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]

Probab=84.32  E-value=1.4  Score=42.02  Aligned_cols=31  Identities=32%  Similarity=0.579  Sum_probs=28.6

Q ss_pred             cCCCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593          209 VFNEERKIILSGSFNPLHDGHLKLLEVATRN  239 (250)
Q Consensus       209 ~~~~~~~~i~~GsFnP~h~gHl~~~~~a~~~  239 (250)
                      ..+..++...-|.||=.|.||+...|.|.++
T Consensus       194 p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~l  224 (358)
T KOG2803|consen  194 PKPTDKVVYVDGAFDLFHAGHLDFLEKAKRL  224 (358)
T ss_pred             CCCCCcEEEEcCchhhhccchHHHHHHHHhc
Confidence            4577889999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 35/268 (13%), Positives = 71/268 (26%), Gaps = 94/268 (35%)

Query: 33  GMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQ-F------CSQQTAV--NMALLAYN 83
           G+L    G+  T +   V        ++  ++  + F      C+    V   +  L Y 
Sbjct: 157 GVL----GSGKTWVALDV----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 84  RALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQE 143
                               +        DH  ++  R           L + L+++  E
Sbjct: 209 --------------------IDPNWTSRSDHSSNIKLRIHS----IQAELRRLLKSKPYE 244

Query: 144 ------DKVSSHLLLKAMASACKV-PATFNSELTDS--------ETVDECEQQFSEDQEL 188
                   V +     A   +CK+   T   ++TD          ++D      + D+  
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 189 E---QIING-------EICFKVYPFL----------------NETQVFNEERKIILSGSF 222
               + ++        E+     P                  N   V  ++   I+  S 
Sbjct: 305 SLLLKYLDCRPQDLPREVL-TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 223 NPLHDGHLKLLEVATRNDCDYFKS-ALF 249
           N L     +            F   ++F
Sbjct: 364 NVLEPAEYR----------KMFDRLSVF 381

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Length = 148

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 215 KIILSGSFNPLHDGHLKLLEVATRNDCDYF 244
           K+ L G+F PLH+GH KL++VA +      
Sbjct: 2   KVALGGTFEPLHEGHKKLIDVAIKLGGRDI 31

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
2a9s_A	171	Competence/damage-inducible protein CINA; APC5759,	100.0
1yum_A	242	'probable nicotinate-nucleotide adenylyltransferas	98.51
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	98.15
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	98.11
1jhd_A	396	Sulfate adenylyltransferase; sulfurylase, APS, che	97.59
1v47_A	349	ATP sulfurylase; product binding complex, zinc, ri	97.1
3gmi_A	357	UPF0348 protein MJ0951; protein with unknown funct	94.91

>2a9s_A Competence/damage-inducible protein CINA; APC5759, ATC1417, MCSG, protei structure initiative; 1.75A {Agrobacterium tumefaciens} SCOP: c.51.5.1

Probab=100.00  E-value=1e-35  Score=253.91  Aligned_cols=142  Identities=23%  Similarity=0.286  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCC-----CCCCHHHHHH
Q 025593            4 ACIRGVVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAVN   76 (250)
Q Consensus         4 ~~~~~~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~-----gaVS~etA~~   76 (250)
                      .+.+.+++.+.++++++.+  |||||++  +++||++||+|++|.||+|+|||++|+++|||+++     |+||+|||++
T Consensus        12 ~l~~~v~~~L~~~~~tla~AEScTGGll--a~~lt~vpGaS~~f~gG~VtYsn~~K~~lLgV~~~~L~~~GaVS~evA~~   89 (171)
T 2a9s_A           12 ELARRIITDFTPLGLMVSTAESCTGGLI--AGALTEIAGSSAVVDRGFVTYTNDAKRDMLGVGTETLTTFGAVSRQTALQ   89 (171)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEESTTTTHH--HHHHTTSTTGGGTEEEEEEECSHHHHHHHHCCCHHHHHHHCSSSHHHHHH
T ss_pred             HHHHHHHHHHHHCCCeEEEeHHhhHHHH--HHHHHhCCCchhhcCCeEEecCHHHHHHHcCCCHHHHHhcCCCCHHHHHH
Confidence            4677899999999999998  8999975  99999999999999999999999999999999987     9999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCeEEEEEceecCC---CCCCC-CCceEEEEEEeCCe-eEEEEEEe-CCCchhHHHHHHHHH--
Q 025593           77 MALLAYNRALKLSRPGAPVLGVGFTGALAS---THPKL-GDHRFHLSTRTSDR-LWVSTVTL-SKGLRTREQEDKVSS--  148 (250)
Q Consensus        77 MA~~a~~r~~~ls~~~~~digIs~TGiaG~---~~~kp-G~htvyIai~~~~~-~~~~~~~l-~~~~R~r~~e~~~~s--  148 (250)
                      ||+++++++       ++||||++||+|||   +.+|| |  +||||++++++ .++++++| .++ |+.+++.++..  
T Consensus        90 MA~ga~~~~-------~ad~avavTGiAGP~g~~~~kpvG--tV~ia~a~~~~~~~~~~~~f~~g~-R~~ir~~a~~~AL  159 (171)
T 2a9s_A           90 MAHGALYRS-------RANFAVAVTGIAGPGGGSAEKPVG--LVHLATKARNGNVLHHEMRYGDIG-RTEIRLATVRTAL  159 (171)
T ss_dssp             HHHHHHHTS-------SCSEEEEEEECCSSSCCCSSSCTT--EEEEEEEETTSCEEEEEEECCSCC-HHHHHHHHHHHHH
T ss_pred             HHHhHHHHh-------CCCEEEEEeecCCCCCCCCCCCCc--EEEEEEEeCCCCEEEEEEECCCCC-HHHHHHHHHHHHH
Confidence            999999998       79999999999997   35688 9  99999999987 78999999 766 99999999854  


Q ss_pred             HHHHHHHHh
Q 025593          149 HLLLKAMAS  157 (250)
Q Consensus       149 ~lL~~~La~  157 (250)
                      ++|++.|.+
T Consensus       160 ~~L~~~L~~  168 (171)
T 2a9s_A          160 EMLIALNQA  168 (171)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            888887753

>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*

Probab=98.51  E-value=4e-08  Score=86.74  Aligned_cols=29  Identities=24%  Similarity=0.488  Sum_probs=26.8

Q ss_pred             CCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593          211 NEERKIILSGSFNPLHDGHLKLLEVATRN  239 (250)
Q Consensus       211 ~~~~~~i~~GsFnP~h~gHl~~~~~a~~~  239 (250)
                      ..++++||+|||||+|+||+.|+++|.++
T Consensus        21 ~~~~i~i~~GsFdPiH~GHl~li~~a~~~   49 (242)
T 1yum_A           21 MGKRIGLFGGTFDPVHIGHMRSAVEMAEQ   49 (242)
T ss_dssp             -CCEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             CCceEEEEEeeCcHhhHHHHHHHHHHHHH
Confidence            45789999999999999999999999998

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}

Probab=98.15  E-value=1.4e-06  Score=77.59  Aligned_cols=38  Identities=18%  Similarity=0.221  Sum_probs=32.4

Q ss_pred             CCCCeEEEecCCCCcCchhHHHHHHHHHhcccCCccceee
Q 025593          210 FNEERKIILSGSFNPLHDGHLKLLEVATRNDCDYFKSALF  249 (250)
Q Consensus       210 ~~~~~~~i~~GsFnP~h~gHl~~~~~a~~~~~~~l~~~~~  249 (250)
                      .+.+++++++|+|||+|.||+.++++|.++  +.-|+++.
T Consensus        73 ~~~~~~V~~~GtFD~~H~GHl~iL~rAk~l--f~gD~LIV  110 (236)
T 3hl4_A           73 CERPVRVYADGIFDLFHSGHARALMQAKNL--FPNTYLIV  110 (236)
T ss_dssp             TTSCEEEEEEECCTTCCHHHHHHHHHHHTS--SSSEEEEE
T ss_pred             CCCCeEEEEeccCCCCCHHHHHHHHHHHHh--cCCCeEEE
Confidence            467889999999999999999999999999  54466553

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}

Probab=98.11  E-value=1.5e-06  Score=80.81  Aligned_cols=35  Identities=29%  Similarity=0.436  Sum_probs=31.1

Q ss_pred             CCCCeEEEecCCCCcCchhHHHHHHHHHhcccCCcc--cee
Q 025593          210 FNEERKIILSGSFNPLHDGHLKLLEVATRNDCDYFK--SAL  248 (250)
Q Consensus       210 ~~~~~~~i~~GsFnP~h~gHl~~~~~a~~~~~~~l~--~~~  248 (250)
                      .++.+++++||||||+|.||++++++|.++    .|  +++
T Consensus       195 ~~~~~iv~~~GsFD~~h~GHl~~L~rA~~l----~D~~~Li  231 (341)
T 3elb_A          195 QPGETVIYVAGAFDLFHIGHVDFLEKVHRL----AERPYII  231 (341)
T ss_dssp             CTTCEEEEEEECCTTCCHHHHHHHHHHHTT----SSSEEEE
T ss_pred             CCCCEEEEEecccCCCCHHHHHHHHHHHHh----CCCCEEE
Confidence            467789999999999999999999999999    67  554

>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5

Probab=97.59  E-value=2.1e-05  Score=74.49  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=29.7

Q ss_pred             EEEecCCCCcCchhHHHHHHHHHhcccCCccceeeC
Q 025593          215 KIILSGSFNPLHDGHLKLLEVATRNDCDYFKSALFL  250 (250)
Q Consensus       215 ~~i~~GsFnP~h~gHl~~~~~a~~~~~~~l~~~~~~  250 (250)
                      ..+-+|||||+|.||+.|+++|++.  +++|.|||.
T Consensus       194 ~VvafqTrNPiHrgH~~l~~~Ale~--~~~D~vll~  227 (396)
T 1jhd_A          194 KVVAFQTRNPMHRAHEELCRMAMES--LDADGVVVH  227 (396)
T ss_dssp             SEEEEEESSCCCHHHHHHHHHHHHH--HTCSEEEEE
T ss_pred             eEEEeccCCCCchHHHHHHHHHHHH--cCCCeEEEE
Confidence            3444999999999999999999999  788999873

>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5

Probab=97.10  E-value=0.00021  Score=66.54  Aligned_cols=27  Identities=19%  Similarity=0.150  Sum_probs=25.3

Q ss_pred             cCCCCcCchhHHHHHHHHHhcccCCccceee
Q 025593          219 SGSFNPLHDGHLKLLEVATRNDCDYFKSALF  249 (250)
Q Consensus       219 ~GsFnP~h~gHl~~~~~a~~~~~~~l~~~~~  249 (250)
                      -|||||+|.||+.|+++|++.    +|.|||
T Consensus       161 fqTrNPiHrgH~~l~~~ale~----~d~vll  187 (349)
T 1v47_A          161 FQTRNAPHRAHEYLIRLGLEL----ADGVLV  187 (349)
T ss_dssp             EEESSCCCHHHHHHHHHHHHH----SSEEEE
T ss_pred             eecCCCCchHHHHHHHHHHHh----CCcEEE
Confidence            699999999999999999998    799987

>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}

Probab=94.91  E-value=0.016  Score=54.19  Aligned_cols=28  Identities=32%  Similarity=0.521  Sum_probs=24.2

Q ss_pred             CCCeEEEecCCCCcCchhHHHHHHHHHh
Q 025593          211 NEERKIILSGSFNPLHDGHLKLLEVATR  238 (250)
Q Consensus       211 ~~~~~~i~~GsFnP~h~gHl~~~~~a~~  238 (250)
                      ..+++++-=|.|||+|+||..++++|.+
T Consensus        50 ~~~~~v~~lG~FDg~H~GHq~lI~~a~~   77 (357)
T 3gmi_A           50 NKDKIVCDFTEYNPLHKGHKYALEKGKE   77 (357)
T ss_dssp             TCCCEEEEECCCTTCCHHHHHHHHHHHT
T ss_pred             CCCCEEEEEEecCccCHHHHHHHHHHHH
Confidence            3445677889999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	250
d1kama_	189	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	1e-04
d1lw7a1	163	c.26.1.3 (A:57-219) Transcriptional regulator NadR	2e-04
d1k4ma_	213	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	2e-04
d1od6a_	160	c.26.1.3 (A:) Phosphopantetheine adenylyltransfera	3e-04
d1coza_	126	c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltr	4e-04
d1qjca_	157	c.26.1.3 (A:) Phosphopantetheine adenylyltransfera	0.001
d1f9aa_	164	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	0.001
d1nuua_	233	c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransfera	0.002
d1ej2a_	167	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	0.002
d1kr2a_	271	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	0.002
d1vlha_	157	c.26.1.3 (A:) Phosphopantetheine adenylyltransfera	0.002

>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 189

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 214 RKI-ILSGSFNPLHDGHLKLLEVA 236
           +KI I  G+F+P H+GHL +    
Sbjct: 2   KKIGIFGGTFDPPHNGHLLMANEV 25

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 213 ERKI-ILSGSFNPLHDGHLKLLEVATRNDCDYFKSALF 249
           E+K+ ++ G F P+H GH+ ++  A  +  D     + 
Sbjct: 1   EKKVGVIFGKFYPVHTGHINMIYEA-FSKVDELHVIVC 37

>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 215 KIILSGSFNPLHDGHLKLLEVA 236
           + +  G+F+P+H GHLK +E  
Sbjct: 5   QALFGGTFDPVHYGHLKPVETL 26

>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 215 KIILSGSFNPLHDGHLKLLEVATR 238
            ++  GSF+PL +GHL +++ A+R
Sbjct: 2   HVVYPGSFDPLTNGHLDVIQRASR 25

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 126

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.2 bits (85), Expect = 4e-04
 Identities = 13/23 (56%), Positives = 18/23 (78%)

Query: 214 RKIILSGSFNPLHDGHLKLLEVA 236
           +K+I  G+F+ LH GH+KLLE A
Sbjct: 2   KKVITYGTFDLLHWGHIKLLERA 24

>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 7/23 (30%), Positives = 16/23 (69%)

Query: 214 RKIILSGSFNPLHDGHLKLLEVA 236
           ++ I  G+F+P+ +GH+ ++  A
Sbjct: 1   KRAIYPGTFDPITNGHIDIVTRA 23

>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 215 KIILSGSFNPLHDGHLKLLEVA 236
           +  + G F P H GHL++++  
Sbjct: 2   RGFIIGRFQPFHKGHLEVIKKI 23

>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human (Homo sapiens), FKSG76 [TaxId: 9606]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Cytosolic NMN/NAMN adenylyltransferase
species: Human (Homo sapiens), FKSG76 [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 216 IILSGSFNPLHDGHLKLLEVA 236
           ++  GSFNP+ + HL++ EVA
Sbjct: 7   LLACGSFNPITNMHLRMFEVA 27

>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 215 KIILSGSFNPLHDGHLKLLEVATR 238
           + +L G   P H GHL++++    
Sbjct: 2   RGLLVGRMQPFHRGHLQVIKSILE 25

>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)

Query: 212 EERKIIL--SGSFNPLHDGHLKLLEVA 236
           E+ +++L   GSFNP+ + HL+L E+A
Sbjct: 1   EKTEVVLLACGSFNPITNMHLRLFELA 27

>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 215 KIILSGSFNPLHDGHLKLLEVATR 238
           K +  GSF+P+  GH+ +++ A  
Sbjct: 2   KAVYPGSFDPITLGHVDIIKRALS 25

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	250
d2a9sa1	167	Competence/damage-inducible protein CinA {Agrobact	100.0

>d2a9sa1 c.51.5.1 (A:1-167) Competence/damage-inducible protein CinA {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: CinA-like
family: CinA-like
domain: Competence/damage-inducible protein CinA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=1.6e-34  Score=243.39  Aligned_cols=143  Identities=22%  Similarity=0.221  Sum_probs=126.0

Q ss_pred             hHHHHHHHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCC-----CCCCHHHHH
Q 025593            3 DACIRGVVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAV   75 (250)
Q Consensus         3 ~~~~~~~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~-----gaVS~etA~   75 (250)
                      +++++.+++.+.++++++++  |||||++  +++|+++||+|++|.||+|+|+|++|.++|||+++     |+||+|||+
T Consensus         9 ~~l~~~v~~~L~~~~~tia~aES~TGGli--a~~lt~vpGaS~~f~gg~V~Ys~~~K~~~Lgv~~~~i~~~g~vS~evA~   86 (167)
T d2a9sa1           9 EELARRIITDFTPLGLMVSTAESCTGGLI--AGALTEIAGSSAVVDRGFVTYTNDAKRDMLGVGTETLTTFGAVSRQTAL   86 (167)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESTTTTHH--HHHHTTSTTGGGTEEEEEEECSHHHHHHHHCCCHHHHHHHCSSSHHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEEeecccchHH--HHHHHccccchhhhcCeecchhhhHHHhHhcCcHhhhccCCCccHHHHH
Confidence            67889999999999999998  8999975  99999999999999999999999999999999987     999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEEEEEceecCCC---CCCC-CCceEEEEEEeCCeeEEEEEEeCC-CchhHHHHHHHHH--
Q 025593           76 NMALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKL-GDHRFHLSTRTSDRLWVSTVTLSK-GLRTREQEDKVSS--  148 (250)
Q Consensus        76 ~MA~~a~~r~~~ls~~~~~digIs~TGiaG~~---~~kp-G~htvyIai~~~~~~~~~~~~l~~-~~R~r~~e~~~~s--  148 (250)
                      +||+++++++       ++||+||+||+|||+   ..|| |  +||||++.+++...++..+.+ +.|..+++.++..  
T Consensus        87 ~MA~g~~~~~-------~adiaia~TG~AGP~~~~~~kpvG--~V~iai~~~~~~~~~~~~~~~~~~R~~ir~~av~~aL  157 (167)
T d2a9sa1          87 QMAHGALYRS-------RANFAVAVTGIAGPGGGSAEKPVG--LVHLATKARNGNVLHHEMRYGDIGRTEIRLATVRTAL  157 (167)
T ss_dssp             HHHHHHHHTS-------SCSEEEEEEECCSSSCCCSSSCTT--EEEEEEEETTSCEEEEEEECCSCCHHHHHHHHHHHHH
T ss_pred             HHHcCchhhc-------ccceeeeecccccCCCCCCCCCCc--EEEEEEEeCCCeEEEEEEECCCCCHHHHHHHHHHHHH
Confidence            9999999998       799999999999984   4477 9  999999999886655544433 3499999988854  


Q ss_pred             HHHHHHHH
Q 025593          149 HLLLKAMA  156 (250)
Q Consensus       149 ~lL~~~La  156 (250)
                      ++|++.+.
T Consensus       158 ~~Ll~l~~  165 (167)
T d2a9sa1         158 EMLIALNQ  165 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77777654