Citrus Sinensis ID: 025596

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALLAAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRITRTYRLPSDDE
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEccHcHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcEEcccccc
Coil and Loop (DISEMBL)
MIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKnlnipcssklstEDLEAEIFLHLLQEYaseesgvfpgswenseasdaqnsLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALLAAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRItrtyrlpsdde
Flexible Loop (DISEMBL)
MIEQDLEEREDFIASLESRFLFLAADArstlrgwrPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALLAAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRitrtyrlpsdde
Low Complexity Region (SEG)
MIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALLAAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRITRTYRLPSDDE
Disordered region (IsUnstruct)
***********FIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYAS*********************LELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALLAAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRITRTYR******
Disordered Region (DISOPRED)
*******EREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYAS*****************************************VELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALLAAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRITR**R******
Disordered Region (DISEMBL)
********REDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALLAAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRITRTYRLPSDDE
Disordered Region (DISPRO)
*IEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALLAAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRITRTYRLP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALLAAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRITRTYRLPSDDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
359495111	354	PREDICTED: uncharacterized protein LOC10	1.0	0.706	0.824	1e-116
224125914	355	predicted protein [Populus trichocarpa]	1.0	0.704	0.776	1e-110
359495113	346	PREDICTED: uncharacterized protein LOC10	0.948	0.684	0.818	1e-109
255573521	372	conserved hypothetical protein [Ricinus	0.988	0.663	0.781	1e-107
18410364	351	uncharacterized protein [Arabidopsis tha	0.988	0.703	0.761	1e-106
30698942	248	uncharacterized protein [Arabidopsis tha	0.988	0.995	0.761	1e-106
27754453	350	unknown protein [Arabidopsis thaliana]	0.988	0.705	0.761	1e-106
297839209	351	hypothetical protein ARALYDRAFT_895206 [	0.988	0.703	0.753	1e-106
334183893	357	uncharacterized protein [Arabidopsis tha	0.988	0.691	0.743	1e-104
11120789	351	unknown protein [Arabidopsis thaliana]	0.976	0.695	0.74	1e-100

>gi|359495111|ref|XP_002263023.2| PREDICTED: uncharacterized protein LOC100243690 isoform 1 [Vitis vinifera] gi|296088813|emb|CBI38263.3| unnamed protein product [Vitis vinifera]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/250 (82%), Positives = 225/250 (90%)

Query: 1   MIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTE 60
           MIE+DLEEREDFI+SLESRFLFLAADARSTLRGWRPSYRNVLL VRK LN+PCSSKLSTE
Sbjct: 100 MIEEDLEEREDFISSLESRFLFLAADARSTLRGWRPSYRNVLLGVRKKLNVPCSSKLSTE 159

Query: 61  DLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVEL 120
           DLE EIFLHLLQ+Y+SEESG    SWENS+AS +  +LE GLSQWKVQA+AA  AGA EL
Sbjct: 160 DLEVEIFLHLLQDYSSEESGALSKSWENSKASTSHGNLEFGLSQWKVQAVAALGAGASEL 219

Query: 121 KSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALL 180
           +S++LKGG + TL KIY LL R LSGK FLEAANYQIK EV+KKGGQLAAINLESRAALL
Sbjct: 220 RSIILKGGSMLTLGKIYHLLARRLSGKLFLEAANYQIKNEVIKKGGQLAAINLESRAALL 279

Query: 181 AAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRIT 240
           AAKQGFAGAA++YLGLR+ +AL GPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRIT
Sbjct: 280 AAKQGFAGAASRYLGLRSTIALFGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRIT 339

Query: 241 RTYRLPSDDE 250
           RTYRLPSD +
Sbjct: 340 RTYRLPSDGD 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125914|ref|XP_002329748.1| predicted protein [Populus trichocarpa] gi|222870656|gb|EEF07787.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/250 (77%), Positives = 223/250 (89%)

Query: 1   MIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTE 60
           M++QD+EERED I+ LESRF FLAADARSTLRGWRP+YRNVLL VRK L+I CSSKLSTE
Sbjct: 106 MMDQDMEEREDMISCLESRFFFLAADARSTLRGWRPTYRNVLLTVRKKLSIGCSSKLSTE 165

Query: 61  DLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVEL 120
           DLEAEIFLHLL+EYASE+SG FPG WE S+ SD Q SL +GLSQ KVQALAA   GA +L
Sbjct: 166 DLEAEIFLHLLEEYASEQSGTFPGLWELSKTSDDQGSLGIGLSQEKVQALAAQKLGAADL 225

Query: 121 KSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALL 180
           +S++LKGGG++TL +IYQ L + L+GK FLEAANYQIKKE++KKGGQLAAINLESRAALL
Sbjct: 226 QSIILKGGGVFTLTRIYQWLAKKLTGKVFLEAANYQIKKEIIKKGGQLAAINLESRAALL 285

Query: 181 AAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRIT 240
            AKQGF GAA++YLGLR+M++LLGP+LWGTFLADVVIQMLGTDYARILRAIYAFAQIRIT
Sbjct: 286 VAKQGFVGAASRYLGLRSMMSLLGPMLWGTFLADVVIQMLGTDYARILRAIYAFAQIRIT 345

Query: 241 RTYRLPSDDE 250
           RT RLP D++
Sbjct: 346 RTCRLPCDND 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495113|ref|XP_003634913.1| PREDICTED: uncharacterized protein LOC100243690 isoform 2 [Vitis vinifera]

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/237 (81%), Positives = 213/237 (89%)

Query: 1   MIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTE 60
           MIE+DLEEREDFI+SLESRFLFLAADARSTLRGWRPSYRNVLL VRK LN+PCSSKLSTE
Sbjct: 100 MIEEDLEEREDFISSLESRFLFLAADARSTLRGWRPSYRNVLLGVRKKLNVPCSSKLSTE 159

Query: 61  DLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVEL 120
           DLE EIFLHLLQ+Y+SEESG    SWENS+AS +  +LE GLSQWKVQA+AA  AGA EL
Sbjct: 160 DLEVEIFLHLLQDYSSEESGALSKSWENSKASTSHGNLEFGLSQWKVQAVAALGAGASEL 219

Query: 121 KSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALL 180
           +S++LKGG + TL KIY LL R LSGK FLEAANYQIK EV+KKGGQLAAINLESRAALL
Sbjct: 220 RSIILKGGSMLTLGKIYHLLARRLSGKLFLEAANYQIKNEVIKKGGQLAAINLESRAALL 279

Query: 181 AAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQI 237
           AAKQGFAGAA++YLGLR+ +AL GPVLWGTFLADVVIQMLGTDYARILRAIYAFAQ+
Sbjct: 280 AAKQGFAGAASRYLGLRSTIALFGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQV 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573521|ref|XP_002527685.1| conserved hypothetical protein [Ricinus communis] gi|223532916|gb|EEF34684.1| conserved hypothetical protein [Ricinus communis]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/247 (78%), Positives = 213/247 (86%)

Query: 3   EQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDL 62
           E D+ ERE FIA+LESRFL+LAADARSTLRGWRPSYRNVLLAVRK LNIPCS KL TEDL
Sbjct: 126 EDDMAEREAFIAALESRFLYLAADARSTLRGWRPSYRNVLLAVRKKLNIPCSRKLPTEDL 185

Query: 63  EAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKS 122
           EAEIFLHLLQ++ SEESG  PG WE SE    Q SLE+GL QW  QA+AA   G  EL+S
Sbjct: 186 EAEIFLHLLQDHPSEESGTVPGLWEFSEVPSDQGSLEIGLRQWNGQAIAAIKLGLAELQS 245

Query: 123 MMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALLAA 182
           ++LKGGG++TL + YQLL R LSGK FLEAANYQIKKEV+KKGGQLAAINLESRAALLAA
Sbjct: 246 VILKGGGVFTLSRFYQLLARKLSGKVFLEAANYQIKKEVIKKGGQLAAINLESRAALLAA 305

Query: 183 KQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRITRT 242
           KQG AGAA++YLG R+M+ALLGP+LWGTFLADVVIQMLGTDYARILRAIYAFA+IRITRT
Sbjct: 306 KQGLAGAASRYLGFRSMLALLGPMLWGTFLADVVIQMLGTDYARILRAIYAFAKIRITRT 365

Query: 243 YRLPSDD 249
           YRL   D
Sbjct: 366 YRLSDID 372

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410364|ref|NP_565065.1| uncharacterized protein [Arabidopsis thaliana] gi|21593462|gb|AAM65429.1| unknown [Arabidopsis thaliana] gi|124301178|gb|ABN04841.1| At1g73470 [Arabidopsis thaliana] gi|332197343|gb|AEE35464.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/247 (76%), Positives = 216/247 (87%)

Query: 1   MIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTE 60
           MI QD+E R+ FI +LESRFLFLAADARSTLRGWRPSYRNVLLAVR NLNIPCSS+L TE
Sbjct: 104 MIGQDIEVRDGFIEALESRFLFLAADARSTLRGWRPSYRNVLLAVRNNLNIPCSSQLPTE 163

Query: 61  DLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVEL 120
           DLEAEIFL+L+  ++SE SGVFPG WENSE S+A+ SLELGLS+WKV+ LAA   GA E+
Sbjct: 164 DLEAEIFLYLVDNFSSEASGVFPGMWENSEVSEAEGSLELGLSKWKVELLAALQVGATEV 223

Query: 121 KSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALL 180
           +SM+LKGGG+ T  K+YQLL + LSGK FLEAANYQI+KE+LKKGGQ AAINLESRAALL
Sbjct: 224 QSMILKGGGMITFAKVYQLLAKKLSGKVFLEAANYQIRKEMLKKGGQFAAINLESRAALL 283

Query: 181 AAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRIT 240
           AAK GFAGAA++Y+GL+  + LLGP++WGT LAD+VIQML TDYARILRAIYAFAQIRIT
Sbjct: 284 AAKHGFAGAASRYIGLKTAMQLLGPMMWGTLLADLVIQMLETDYARILRAIYAFAQIRIT 343

Query: 241 RTYRLPS 247
           RTYRLP 
Sbjct: 344 RTYRLPC 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30698942|ref|NP_849881.1| uncharacterized protein [Arabidopsis thaliana] gi|182623788|gb|ACB88831.1| At1g73470 [Arabidopsis thaliana] gi|332197344|gb|AEE35465.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/247 (76%), Positives = 216/247 (87%)

Query: 1   MIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTE 60
           MI QD+E R+ FI +LESRFLFLAADARSTLRGWRPSYRNVLLAVR NLNIPCSS+L TE
Sbjct: 1   MIGQDIEVRDGFIEALESRFLFLAADARSTLRGWRPSYRNVLLAVRNNLNIPCSSQLPTE 60

Query: 61  DLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVEL 120
           DLEAEIFL+L+  ++SE SGVFPG WENSE S+A+ SLELGLS+WKV+ LAA   GA E+
Sbjct: 61  DLEAEIFLYLVDNFSSEASGVFPGMWENSEVSEAEGSLELGLSKWKVELLAALQVGATEV 120

Query: 121 KSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALL 180
           +SM+LKGGG+ T  K+YQLL + LSGK FLEAANYQI+KE+LKKGGQ AAINLESRAALL
Sbjct: 121 QSMILKGGGMITFAKVYQLLAKKLSGKVFLEAANYQIRKEMLKKGGQFAAINLESRAALL 180

Query: 181 AAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRIT 240
           AAK GFAGAA++Y+GL+  + LLGP++WGT LAD+VIQML TDYARILRAIYAFAQIRIT
Sbjct: 181 AAKHGFAGAASRYIGLKTAMQLLGPMMWGTLLADLVIQMLETDYARILRAIYAFAQIRIT 240

Query: 241 RTYRLPS 247
           RTYRLP 
Sbjct: 241 RTYRLPC 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27754453|gb|AAO22674.1| unknown protein [Arabidopsis thaliana]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/247 (76%), Positives = 216/247 (87%)

Query: 1   MIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTE 60
           MI QD+E R+ FI +LESRFLFLAADARSTLRGWRPSYRNVLLAVR NLNIPCSS+L TE
Sbjct: 103 MIGQDIEVRDGFIEALESRFLFLAADARSTLRGWRPSYRNVLLAVRNNLNIPCSSQLPTE 162

Query: 61  DLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVEL 120
           DLEAEIFL+L+  ++SE SGVFPG WENSE S+A+ SLELGLS+WKV+ LAA   GA E+
Sbjct: 163 DLEAEIFLYLVDNFSSEASGVFPGMWENSEVSEAEGSLELGLSKWKVELLAALQVGATEV 222

Query: 121 KSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALL 180
           +SM+LKGGG+ T  K+YQLL + LSGK FLEAANYQI+KE+LKKGGQ AAINLESRAALL
Sbjct: 223 QSMILKGGGMITFAKVYQLLAKKLSGKVFLEAANYQIRKEMLKKGGQFAAINLESRAALL 282

Query: 181 AAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRIT 240
           AAK GFAGAA++Y+GL+  + LLGP++WGT LAD+VIQML TDYARILRAIYAFAQIRIT
Sbjct: 283 AAKHGFAGAASRYIGLKTAMQLLGPMMWGTLLADLVIQMLETDYARILRAIYAFAQIRIT 342

Query: 241 RTYRLPS 247
           RTYRLP 
Sbjct: 343 RTYRLPC 349

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839209|ref|XP_002887486.1| hypothetical protein ARALYDRAFT_895206 [Arabidopsis lyrata subsp. lyrata] gi|297333327|gb|EFH63745.1| hypothetical protein ARALYDRAFT_895206 [Arabidopsis lyrata subsp. lyrata]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/247 (75%), Positives = 217/247 (87%)

Query: 1   MIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTE 60
           MI QD++ R+ +I +LESRFLFLAADARSTLRGWRPSY+NVLLAVR NLNIPCSS+L TE
Sbjct: 104 MIGQDIQVRDGYIEALESRFLFLAADARSTLRGWRPSYKNVLLAVRNNLNIPCSSQLPTE 163

Query: 61  DLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVEL 120
           DLEAEIFL+L+  ++SE SGVFPG WENSE S+A+ SLELGLS+WKV+ LAA + GA E+
Sbjct: 164 DLEAEIFLYLVDNFSSEASGVFPGLWENSEVSEAKGSLELGLSKWKVELLAALHVGATEV 223

Query: 121 KSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALL 180
           +SM+LKGGG+ T  K+YQLL + LSGK FLEAANYQI+KE+LKKGGQLAAIN+ESRAALL
Sbjct: 224 QSMILKGGGVITFAKVYQLLAKKLSGKVFLEAANYQIRKEMLKKGGQLAAINMESRAALL 283

Query: 181 AAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRIT 240
           AAK GFAGAA +Y+GLR  + LLGP++WGT LAD+VIQML TDYARILRAIYAFAQIRIT
Sbjct: 284 AAKHGFAGAAARYIGLRTAMQLLGPMMWGTLLADLVIQMLETDYARILRAIYAFAQIRIT 343

Query: 241 RTYRLPS 247
           RTYRLP 
Sbjct: 344 RTYRLPC 350

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183893|ref|NP_001185391.1| uncharacterized protein [Arabidopsis thaliana] gi|332197345|gb|AEE35466.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/253 (74%), Positives = 216/253 (85%), Gaps = 6/253 (2%)

Query: 1   MIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTE 60
           MI QD+E R+ FI +LESRFLFLAADARSTLRGWRPSYRNVLLAVR NLNIPCSS+L TE
Sbjct: 104 MIGQDIEVRDGFIEALESRFLFLAADARSTLRGWRPSYRNVLLAVRNNLNIPCSSQLPTE 163

Query: 61  DLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVEL 120
           DLEAEIFL+L+  ++SE SGVFPG WENSE S+A+ SLELGLS+WKV+ LAA   GA E+
Sbjct: 164 DLEAEIFLYLVDNFSSEASGVFPGMWENSEVSEAEGSLELGLSKWKVELLAALQVGATEV 223

Query: 121 KSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRAALL 180
           +SM+LKGGG+ T  K+YQLL + LSGK FLEAANYQI+KE+LKKGGQ AAINLESRAALL
Sbjct: 224 QSMILKGGGMITFAKVYQLLAKKLSGKVFLEAANYQIRKEMLKKGGQFAAINLESRAALL 283

Query: 181 AAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFA----- 235
           AAK GFAGAA++Y+GL+  + LLGP++WGT LAD+VIQML TDYARILRAIYAFA     
Sbjct: 284 AAKHGFAGAASRYIGLKTAMQLLGPMMWGTLLADLVIQMLETDYARILRAIYAFAQDCFV 343

Query: 236 -QIRITRTYRLPS 247
            QIRITRTYRLP 
Sbjct: 344 LQIRITRTYRLPC 356

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11120789|gb|AAG30969.1|AC012396_5 unknown protein [Arabidopsis thaliana]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/250 (74%), Positives = 212/250 (84%), Gaps = 6/250 (2%)

Query: 1   MIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTE 60
           MI QD+E R+ FI +LESRFLFLAADARSTLR   PSYRNVLLAVR NLNIPCSS+L TE
Sbjct: 104 MIGQDIEVRDGFIEALESRFLFLAADARSTLR---PSYRNVLLAVRNNLNIPCSSQLPTE 160

Query: 61  DLEAEIFLHLLQE---YASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGA 117
           DLEAEIFL+L+     Y+ E SGVFPG WENSE S+A+ SLELGLS+WKV+ LAA   GA
Sbjct: 161 DLEAEIFLYLVDNFSRYSGEASGVFPGMWENSEVSEAEGSLELGLSKWKVELLAALQVGA 220

Query: 118 VELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQLAAINLESRA 177
            E++SM+LKGGG+ T  K+YQLL + LSGK FLEAANYQI+KE+LKKGGQ AAINLESRA
Sbjct: 221 TEVQSMILKGGGMITFAKVYQLLAKKLSGKVFLEAANYQIRKEMLKKGGQFAAINLESRA 280

Query: 178 ALLAAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQI 237
           ALLAAK GFAGAA++Y+GL+  + LLGP++WGT LAD+VIQML TDYARILRAIYAFAQI
Sbjct: 281 ALLAAKHGFAGAASRYIGLKTAMQLLGPMMWGTLLADLVIQMLETDYARILRAIYAFAQI 340

Query: 238 RITRTYRLPS 247
           RITRTYRLP 
Sbjct: 341 RITRTYRLPC 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006040001 SubName- Full=Chromosome undetermined scaffold_163, whole genome shotgun sequence; (312 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	250
COG4735	211	COG4735, COG4735, Uncharacterized protein conserve	1e-17

>gnl|CDD|227078 COG4735, COG4735, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 77.9 bits (192), Expect = 1e-17
 Identities = 57/211 (27%), Positives = 90/211 (42%), Gaps = 22/211 (10%)

Query: 37  SYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQN 96
            YR  L+ V K L        +T  L A  FL  L +   +               D ++
Sbjct: 12  KYREGLIQVCKYLKRIAEELQTTGGLSAANFLRDLGQLYKKIL------------CDEKD 59

Query: 97  SL------ELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFL 150
            L      ELG ++ +   L       +E    MLKGG    +  +    +  +  +  +
Sbjct: 60  KLKVKVQKELGTTEIEEPLLLQILRNPLEK---MLKGGKAEAVDSLDAPNVLEIEEQLQV 116

Query: 151 EAANYQIKKEVLKKGGQLAAINLESRAALLAAKQGFAGAATKYLGLRNMVALLGPVLWGT 210
             A+Y + K+ L KG    A+ L++  AL    QG    A  Y  +R + +L GPV W  
Sbjct: 117 LIADYLVAKKALGKGSYQLAVILQNAVALQTLGQGLLRGAA-YGLVRTLFSLGGPVGWAL 175

Query: 211 FLADVVIQMLGTDYARILRAIYAFAQIRITR 241
           F AD+  + +GT+Y   + AI+  AQ+R+TR
Sbjct: 176 FGADLGWRAIGTNYRVTIPAIFQLAQLRLTR 206

Length = 211

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
COG4735	211	Uncharacterized protein conserved in bacteria [Fun	100.0
PRK10236	237	hypothetical protein; Provisional	100.0
COG4735	211	Uncharacterized protein conserved in bacteria [Fun	98.28
PF03981	141	Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone	97.73

>COG4735 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=9e-50  Score=349.70  Aligned_cols=187  Identities=24%  Similarity=0.390  Sum_probs=173.6

Q ss_pred             HHHHHHHHHHHHhhhhhhh-hhhhcCCCccHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCccc
Q 025596            9 REDFIASLESRFLFLAADA-RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWE   87 (250)
Q Consensus         9 r~~~~~~ie~rf~flaAD~-~t~lRG~~~sYReVLldVc~kLkV~~s~~lsT~dLEaeIfl~lL~~~~~~~~~~~~~awe   87 (250)
                      -..+...|.++++.+++|+ .+.|||.|+.||+||+|+|||||++|+++++|.+||+.++++++++           +|+
T Consensus        20 ~~ky~k~ia~elq~~gg~s~anflr~~G~lyk~il~d~~~~Lk~k~~k~~~tt~Iee~ll~~il~~-----------~l~   88 (211)
T COG4735          20 VCKYLKRIAEELQTTGGLSAANFLRDLGQLYKKILCDEKDKLKVKVQKELGTTEIEEPLLLQILRN-----------PLE   88 (211)
T ss_pred             HHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhccccccchhHHHHHHh-----------HHH
Confidence            3456778999999999999 6999999999999999999999999999999999999999999999           999


Q ss_pred             CCCchhhhhHHHhhhhhHHHHHHHhhhcCchhHHHHHHhcchHHHHHHHHH-HHHHHhhHHHHHHHhhHHHHHHHHHhhh
Q 025596           88 NSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQ-LLMRNLSGKFFLEAANYQIKKEVLKKGG  166 (250)
Q Consensus        88 k~~~~~e~~sl~~~l~~~~~~~la~~~lg~~~~~~~llkggsa~av~~i~~-~l~~~ls~q~a~~~A~Yq~ak~~l~~Gg  166 (250)
                      ||+.. +.+++++.+.                                  . .+.+ |..|+.+++|.|++||.+..+|+
T Consensus        89 km~~~-~~~e~~~~l~----------------------------------~~~v~~-i~e~~~vl~a~~l~ak~~~~~~S  132 (211)
T COG4735          89 KMLKG-GKAEAVDSLD----------------------------------APNVLE-IEEQLQVLIADYLVAKKALGKGS  132 (211)
T ss_pred             HHhHH-HHHHHHHHhc----------------------------------chhHHH-HHHHHHHHHHHHHHHHHHhccch
Confidence            99998 6666554443                                  3 3445 88999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHhhhc
Q 025596          167 QLAAINLESRAALLAAKQGFAGAATKYLGLRNMVALLGPVLWGTFLADVVIQMLGTDYARILRAIYAFAQIRITRTY  243 (250)
Q Consensus       167 ~~aa~~l~~~~a~~~A~rG~~~~Aary~~~Rs~~~llGPilW~w~~aDL~~~~igt~Y~riIpaI~alAqIRltRt~  243 (250)
                      ..+|.+++|++|+|+++|||++.|+ |+++||+|+|.|||||+||.+|++||++|||||||||+||++||||++|..
T Consensus       133 ~qla~~l~~~~a~q~lg~Gl~~ga~-~~~~rtl~~l~GPvgw~l~ga~~~~~~~g~~YrvtIPai~~lA~lRl~~~~  208 (211)
T COG4735         133 YQLAVILQNAVALQTLGQGLLRGAA-YGLVRTLFSLGGPVGWALFGADLGWRAIGTNYRVTIPAIFQLAQLRLTRAA  208 (211)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhh-hhHHHHHHHhcchHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888 999999999999999999999999999999999999999999999999863

>PRK10236 hypothetical protein; Provisional

Probab=100.00  E-value=2e-42  Score=309.81  Aligned_cols=171  Identities=20%  Similarity=0.307  Sum_probs=132.0

Q ss_pred             hHHHHHHHHHHHHhhhhhhh-hhhhcCCCccHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCcc
Q 025596            8 EREDFIASLESRFLFLAADA-RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSW   86 (250)
Q Consensus         8 ~r~~~~~~ie~rf~flaAD~-~t~lRG~~~sYReVLldVc~kLkV~~s~~lsT~dLEaeIfl~lL~~~~~~~~~~~~~aw   86 (250)
                      |-...-+.||.||||||||+ +|+|||+||+|||||+|||||||||||+++||++||+|||+|++++           +|
T Consensus        58 ~~~~yw~~Ia~elq~fGgnt~~n~lRG~Gv~YreIL~DVc~~LKV~y~~~~st~~iE~~il~kll~~-----------a~  126 (237)
T PRK10236         58 QHRRNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRN-----------TW  126 (237)
T ss_pred             hHHHHHHHHHHHHHHhcchHHHHHHhcCCccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHH-----------HH
Confidence            34445579999999999999 5799999999999999999999999999999999999999999999           99


Q ss_pred             cCCCchhhhhHHHhhhhhHHHHHHHhhhcCchhHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHhhh
Q 025596           87 ENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGG  166 (250)
Q Consensus        87 ek~~~~~e~~sl~~~l~~~~~~~la~~~lg~~~~~~~llkggsa~av~~i~~~l~~~ls~q~a~~~A~Yq~ak~~l~~Gg  166 (250)
                      +|||++ |+++|+..++.    .+  +.  ...+.+.++..-     +.+.+          +.+|+.||++.-+.    
T Consensus       127 ~kms~e-E~~~L~~~l~~----~l--~~--~~~~~~~ll~~~-----~~~~~----------~~gf~~y~l~~iv~----  178 (237)
T PRK10236        127 KKMDEE-HKQEFLHAVDA----RV--NE--LEELLPLLMKDK-----LLAKG----------VSHLLSSQLTRILR----  178 (237)
T ss_pred             HHCCHH-HHHHHHHHHhh----hc--cC--cccchHHHHHHH-----HHHHh----------hcchHHHHHHHHHH----
Confidence            999999 99999999985    22  11  223455543321     11222          34555555443322    


Q ss_pred             HHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHhHHHHHHHHH-HHHHHhhccchhHHHHHHHHHHHHHH
Q 025596          167 QLAAINLESRAALLAAKQGFAGAATKYLGLRNMVALLGPVLWGTFLA-DVVIQMLGTDYARILRAIYAFAQIRI  239 (250)
Q Consensus       167 ~~aa~~l~~~~a~~~A~rG~~~~Aary~~~Rs~~~llGPilW~w~~a-DL~~~~igt~Y~riIpaI~alAqIRl  239 (250)
                              |.++.+..++|++         |+++ |+|||+|+.+.+ |++    ||+||||||||++||.+|.
T Consensus       179 --------~~i~~~~lG~gL~---------r~~~-l~GPIGw~itg~wdla----gpAyRVTIPaviqIA~Lrq  230 (237)
T PRK10236        179 --------THAAMSVLGHGLL---------RGAG-LGGPVGAALNGVKAVS----GSAYRVTIPAVLQIACLRR  230 (237)
T ss_pred             --------HHHHHHHhhhhHH---------HHhh-ccCchhHHhhhhHHhc----CCeeeeecchHHHHHHHHH
Confidence                    3344555777776         6665 999999994443 555    9999999999999999975

>COG4735 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.28  E-value=3.5e-06  Score=75.27  Aligned_cols=91  Identities=23%  Similarity=0.253  Sum_probs=81.3

Q ss_pred             hhhhcCC--CccHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCcccCCCchhhhhHHHhhhhhH
Q 025596           28 RSTLRGW--RPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQW  105 (250)
Q Consensus        28 ~t~lRG~--~~sYReVLldVc~kLkV~~s~~lsT~dLEaeIfl~lL~~~~~~~~~~~~~awek~~~~~e~~sl~~~l~~~  105 (250)
                      +|++||+  ..+||+-+.||||+++++++.-..|-++|.+.|+|.+.+           .|++.+.. +.+.|....++ 
T Consensus         1 lt~~l~~~~~~k~r~g~~~~~ky~k~ia~elq~~gg~s~anflr~~G~-----------lyk~il~d-~~~~Lk~k~~k-   67 (211)
T COG4735           1 LTVLLGRSEQFKYREGLIQVCKYLKRIAEELQTTGGLSAANFLRDLGQ-----------LYKKILCD-EKDKLKVKVQK-   67 (211)
T ss_pred             CchhhccchhhHHHhhHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHH-----------HHHHcCHH-HHHHHHHHHHH-
Confidence            3677876  999999999999999999999999999999999999999           99999998 88888888887 


Q ss_pred             HHHHHHhhhcCc-------hhHHHHHHhcchHHHHH
Q 025596          106 KVQALAAFNAGA-------VELKSMMLKGGGIYTLV  134 (250)
Q Consensus       106 ~~~~la~~~lg~-------~~~~~~llkggsa~av~  134 (250)
                         .+..+.+.+       +||...++|||++.+++
T Consensus        68 ---~~~tt~Iee~ll~~il~~~l~km~~~~~~e~~~  100 (211)
T COG4735          68 ---ELGTTEIEEPLLLQILRNPLEKMLKGGKAEAVD  100 (211)
T ss_pred             ---hhccccccchhHHHHHHhHHHHHhHHHHHHHHH
Confidence               677777766       89999999999886654

>PF03981 Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone ; InterPro: IPR021150 Saccharomyces cerevisiae ubiquinol-cytochrome C chaperone is required for assembly of coenzyme QF-2-cytochrome C reductase

Probab=97.73  E-value=6.7e-05  Score=60.99  Aligned_cols=53  Identities=17%  Similarity=0.227  Sum_probs=42.3

Q ss_pred             HHHHHHHhhhhhhh-hhhhcCCCccHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCcccCCCch
Q 025596           14 ASLESRFLFLAADA-RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEAS   92 (250)
Q Consensus        14 ~~ie~rf~flaAD~-~t~lRG~~~sYReVLldVc~kLkV~~s~~lsT~dLEaeIfl~lL~~~~~~~~~~~~~awek~~~~   92 (250)
                      |++++||+++.... +.+.|                ||..+   .+.+++|+++|.++.+|           ++++|.+.
T Consensus         7 dt~~~~f~~~~lh~~l~~~R----------------Lk~~~---~~~~~~~q~l~~~~~~d-----------~~~~l~~~   56 (141)
T PF03981_consen    7 DTFAGRFQMLGLHVWLVLRR----------------LKAEG---KEGKELEQALFDKFFED-----------MDERLREM   56 (141)
T ss_pred             cCHHHHHHHHHHHHHHHHHH----------------Hcccc---ccHHHHHHHHHHHHHHH-----------HHHHHHHh
Confidence            57899999999998 45545                77776   44699999999999999           88888776


Q ss_pred             hhhhH
Q 025596           93 DAQNS   97 (250)
Q Consensus        93 ~e~~s   97 (250)
                       +.++
T Consensus        57 -gv~d   60 (141)
T PF03981_consen   57 -GVGD   60 (141)
T ss_pred             -cCcc
Confidence             4444

It appears to be found in a number of different organisms including Homo sapiens, Caenorhabditis elegans and Rhizobium meliloti. This entry also contains bacterial proteins belonging to the UPF0174 family.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00