Citrus Sinensis ID: 025603

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MKKPNNATAGSSKTKFKEESEEDNKTTSVTSSEEEEEIERELAEITFEDLLKARSDGSHLVYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILAEHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMPYRRPNNNDQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHccccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccEEccccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mkkpnnatagssktkfkeeseednkttsvtsseEEEEIERELAEITFEDLLKArsdgshlvyrknsqekkagranknrpmevsakkpvSRFREvvqapkrvvrdprfeslcgnldvegfrkRYDFLFENTLPAEKEELKKQLKktndpnavdKLKKRISWIDKQlrfestksTDAAILAEHKKKEREaakhgkrpfylknSEIRKQRLIEKYNKlkgsgkveSFIEKRRRKnaakdhkympyrrpnnndq
Flexible Loop (DISEMBL)
mkkpnnatagssktkfkeeseednkttsvtsseeeeeIERELAEITFEDLLkarsdgshlvyrknsqekkagranknrpmevsakkpvsrfrevvqapkrvvrdprfeslcgnldvegfrKRYDFLFENTLPAEKEELKkqlkktndpnavdklkkriswidkqlrfestkstdaAILAEHKkkereaakhgkrpfylknseirKQRLIEkynklkgsgkvesfiekrrrknaakdhkympyrrpnnndq
Low Complexity Region (SEG)
MKKPNNATAGssktkfkeeseeDNKTTSVTSSeeeeeierelaeitfeDLLKARSDGSHLVYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAekeelkkqlkkTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILaehkkkereaakhgkrPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMPYRRPNNNDQ
Disordered region (IsUnstruct)
***************************************************************************************************RVVRDPRFESLCGNLDVEGFRKRYDFLFENTL*************************RISWIDKQL*************************************************************************************
Disordered Region (DISOPRED)
*********************************************************************************************VVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPA**************************************************************FYLKNSEIRK*********************************************
Disordered Region (DISEMBL)
****************************************ELAEITFEDLLKARSDGSHLVYRKN************************RFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILAE***********GKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMPYRRPNNNDQ
Disordered Region (DISPRO)
******************************************AEITFEDLLKARSDGS***************************KPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILAEHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNA*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKKPNNATAGSSKTKFKEESEEDNKTTSVTSSEEEEEIERELAEITFEDLLKARSDGSHLVYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILAEHKKKEREAAKHGKRPFYxxxxxxxxxxxxxxxxxxxxxGKVESFIEKRRRKNAAKDHKYMPYRRPNNNDQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	250	2.2.26 [Sep-21-2011]
A6RKG5	300	rRNA biogenesis protein r	N/A	no	0.684	0.57	0.414	3e-26
Q3UFY0	244	Ribosomal RNA processing	yes	no	0.788	0.807	0.363	6e-26
Q96EU6	259	Ribosomal RNA processing	yes	no	0.812	0.783	0.366	8e-26
A6QNR1	246	Ribosomal RNA processing	yes	no	0.84	0.853	0.345	2e-25
B6K8A0	283	rRNA biogenesis protein r	N/A	no	0.68	0.600	0.356	4e-25
A7SL20	247	Ribosomal RNA processing	N/A	no	0.9	0.910	0.351	2e-24
A7E4K0	301	rRNA biogenesis protein r	N/A	no	0.76	0.631	0.378	4e-24
Q0V389	331	rRNA biogenesis protein R	N/A	no	0.684	0.516	0.379	8e-22
C7YTL6	310	rRNA biogenesis protein R	N/A	no	0.664	0.535	0.395	6e-21
A4R1G4	316	rRNA biogenesis protein R	N/A	no	0.7	0.553	0.339	1e-20

>sp|A6RKG5|RRP36_BOTFB rRNA biogenesis protein rrp36 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp36 PE=3 SV=1

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/193 (41%), Positives = 118/193 (61%), Gaps = 22/193 (11%)

Query: 66  SQEKKAG--------RANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVE 117
           + E+KAG        R++KN P EVS+KK VSR REVV   KR +RDPRFE   G +D++
Sbjct: 112 ATERKAGKKDQRDFTRSSKNAPTEVSSKKAVSRRREVVPVKKREIRDPRFEPTNGPVDMQ 171

Query: 118 GFRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDA-- 175
              K YDFL  +    E ++LK+ ++KT D +  +KLK+ +      LR ES K TDA  
Sbjct: 172 KIEKNYDFLV-DYREDEMKKLKETIRKTKDEDEKEKLKREL------LRMESRKKTDARK 224

Query: 176 ----AILAEHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRK 231
                +L +H+K+E+E  K GK P+YLK +E +K+ L++ + +LKG  +++  IE+RR+K
Sbjct: 225 RKAREVLDKHRKEEKELVKEGKTPYYLKKAEQKKRVLLDTFGELKGR-QLDRVIERRRKK 283

Query: 232 NAAKDHKYMPYRR 244
              K+ K MP  R
Sbjct: 284 VEGKEKKNMPRAR 296

Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway.
Botryotinia fuckeliana (strain B05.10) (taxid: 332648)

>sp|Q3UFY0|RRP36_MOUSE Ribosomal RNA processing protein 36 homolog OS=Mus musculus GN=Rrp36 PE=2 SV=1

 Score =  117 bits (294), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 123/209 (58%), Gaps = 12/209 (5%)

Query: 44  EITFEDLLKARSDG-----SHLV----YRKNSQEKKAGRANKNRPMEVSAKKPVSRFREV 94
           +++FE+LL+ +  G       LV     R  S ++    A+K+RP+E+SAK  V   R+V
Sbjct: 35  DVSFEELLRLQGQGRPKAHKQLVAGNSTRTRSPQQPVCVADKHRPLEMSAKVRVPFLRQV 94

Query: 95  VQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPA-EKEELKKQLKKTNDPNAVDK 153
           V   K+V RDPRF+ L G+ + E F K Y FL  N + A EK+ +KKQLK+       DK
Sbjct: 95  VPISKKVARDPRFDDLSGDYNPEVFDKTYQFL--NDIRAKEKQLVKKQLKRHRSGEERDK 152

Query: 154 LKKRISWIDKQLRFESTKSTDAAILAEHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYN 213
           L++ +  +++Q   +  +     +    K++ R  A+ G RP++LK SE R+  L EK+ 
Sbjct: 153 LQQLLQRMEQQEMAQQERKQQQELRLALKQERRAQAQQGHRPYFLKKSEQRQLALAEKFK 212

Query: 214 KLKGSGKVESFIEKRRRKNAAKDHKYMPY 242
           +L+ S K+ESF+ ++RR+NA KD +++P 
Sbjct: 213 ELRRSKKLESFLSRKRRRNAGKDRRHLPL 241

Involved in the early processing steps of the pre-rRNA in the maturation pathway leading to the 18S rRNA.

Mus musculus (taxid: 10090)

>sp|Q96EU6|RRP36_HUMAN Ribosomal RNA processing protein 36 homolog OS=Homo sapiens GN=RRP36 PE=1 SV=1

 Score =  117 bits (293), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 129/218 (59%), Gaps = 15/218 (6%)

Query: 37  EIERELAEITFEDLLKARSDGSHLVYRK----NSQEKKAGR--------ANKNRPMEVSA 84
           ++ R  + ++FE+LL+ +S      Y++    NS +K+A R        A+K+RP+E+SA
Sbjct: 40  DLLRGTSNMSFEELLELQSQVGTKTYKQLVAGNSPKKQASRPPIQNACVADKHRPLEMSA 99

Query: 85  KKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPA-EKEELKKQLK 143
           K  V   R+VV   K+V RDPRF+ L G  + E F K Y FL  N + A EKE +KKQLK
Sbjct: 100 KIRVPFLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTYQFL--NDIRAKEKELVKKQLK 157

Query: 144 KTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILAEHKKKEREAAKHGKRPFYLKNSEI 203
           K       +KL++ +  +++Q   +  +     +    K++ R  A+ G RP++LK SE 
Sbjct: 158 KHLSGEEHEKLQQLLQRMEQQEMAQQERKQQQELHLALKQERRAQAQQGHRPYFLKKSEQ 217

Query: 204 RKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMP 241
           R+  L EK+ +LK S K+E+F+ ++RR+NA KD +++P
Sbjct: 218 RQLALAEKFKELKRSKKLENFLSRKRRRNAGKDRRHLP 255

Involved in the early processing steps of the pre-rRNA in the maturation pathway leading to the 18S rRNA.

Homo sapiens (taxid: 9606)

>sp|A6QNR1|RRP36_BOVIN Ribosomal RNA processing protein 36 homolog OS=Bos taurus GN=RRP36 PE=2 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 129/223 (57%), Gaps = 13/223 (5%)

Query: 31  SSEEEEEIERELAEITFEDLLKARSDGSHLVYRK----NSQEKKAGR--------ANKNR 78
             E++  +  + + ++FE+LL+ +S      Y++    +S +K++ R        A+K+R
Sbjct: 21  GGEDDGSLRNDTSHMSFEELLELQSQVGTKAYKQLVTGSSTKKQSSRPPVQKGCVADKHR 80

Query: 79  PMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEKEEL 138
           P+E+SAK  V   R+VV   K+V RDPRF+ L G  + E F K Y FL ++    EKE +
Sbjct: 81  PLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTYQFL-DDIRAREKELV 139

Query: 139 KKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILAEHKKKEREAAKHGKRPFYL 198
           KKQLKK       +KL+  +  +++Q   +  +     +    K++ R  A+ G RP++L
Sbjct: 140 KKQLKKHRSGEEHEKLQHLLQRMEQQEMAQKERKRQQELRLALKQERRAQAQQGHRPYFL 199

Query: 199 KNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMP 241
           K SE R+  L EK+ +LK S K+ESF+ ++RR+NA KD +++P
Sbjct: 200 KKSEQRQLVLAEKFKELKRSKKLESFLSRKRRRNAGKDRRHLP 242

Involved in the early processing steps of the pre-rRNA in the maturation pathway leading to the 18S rRNA.

Bos taurus (taxid: 9913)

>sp|B6K8A0|RRP36_SCHJY rRNA biogenesis protein rrp36 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rrp36 PE=3 SV=1

 Score =  115 bits (287), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 110/171 (64%), Gaps = 1/171 (0%)

Query: 76  KNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEK 135
           K+ P+E+S+K+ V RFREVV  PK + RDPRF++L GNL+V+  +  Y F+ E  L +E 
Sbjct: 112 KHAPVEMSSKRAVPRFREVVHVPKPLRRDPRFDTLSGNLNVDKVKNNYGFVMEYRL-SEI 170

Query: 136 EELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILAEHKKKEREAAKHGKRP 195
           ++L+++LK   +    +++K+ +  +  +L         A +L EH++ E+E  + GK+P
Sbjct: 171 KQLEQELKSCREQERRERIKEALKSLRSKLERRKEDERTARVLKEHRQSEKEKIRQGKKP 230

Query: 196 FYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMPYRRPN 246
           FYLK SE +K   ++KY  ++G+  ++ ++EK++++ A K+ K +P  RP+
Sbjct: 231 FYLKKSEQKKLLQLDKYKSMEGTKALDRYMEKKQKRRAQKEKKRLPRARPD 281

Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway.

Schizosaccharomyces japonicus (strain yFS275 / FY16936) (taxid: 402676)

>sp|A7SL20|RRP36_NEMVE Ribosomal RNA processing protein 36 homolog OS=Nematostella vectensis GN=v1g245966 PE=3 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/245 (35%), Positives = 140/245 (57%), Gaps = 20/245 (8%)

Query: 15  KFKEESEEDNKTTSVTSSEEEEEIERELAEITFEDLL----KARSDGSHLVYRKNSQEKK 70
           +  + S++++ T   +   E E ++ EL++I F +L     K  S   +L      +E+ 
Sbjct: 4   QLSDSSDDESPTDDCSDEGEVEHLKDELSQIPFCELQDLKDKIGSKKYNLAIHGIMEERT 63

Query: 71  AG------RANKNR-PMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRY 123
            G      +  KN+ P E+S+K+ V + R+VVQ  K++ RDPRF+ L G  + + FRK Y
Sbjct: 64  QGIPDLETKKKKNKGPQELSSKQRVPKLRKVVQVKKKMGRDPRFDDLSGKFNEDLFRKSY 123

Query: 124 DFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILAEHKK 183
            F+  +    EK+ ++K+LKKT +      L   +  +++Q R  S KS +A    E KK
Sbjct: 124 SFV-NDIRVEEKKSVEKELKKTKNAEKRKNLNDLLKVMNQQER--SRKSAEAK--RESKK 178

Query: 184 K----EREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKY 239
           K    ERE  + GK+PFYL+ SE++K  L EKY +LK  GK++ ++ KRR+K A+KD ++
Sbjct: 179 KIKETERELVQKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYLTKRRKKTASKDRRH 238

Query: 240 MPYRR 244
           +P RR
Sbjct: 239 VPERR 243

Involved in the early processing steps of the pre-rRNA in the maturation pathway leading to the 18S rRNA.

Nematostella vectensis (taxid: 45351)

>sp|A7E4K0|RRP36_SCLS1 rRNA biogenesis protein rrp36 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rrp36 PE=3 SV=1

 Score =  111 bits (278), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/235 (37%), Positives = 129/235 (54%), Gaps = 45/235 (19%)

Query: 43  AEITFEDLLKAR------------------SDGSHLVYRKN-SQEKKAG--------RAN 75
           A I+F  L KA+                  +DG    +  N + E+KAG        R++
Sbjct: 75  ASISFGALAKAQATMSKPSKRDSKKSKKSNADG----WEDNEATERKAGKKDQRDFTRSS 130

Query: 76  KNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEK 135
           KN P E+S+KK VSR REVV   KR +RDPRF+   G +D+    K YDFL  +    E 
Sbjct: 131 KNAPTEISSKKAVSRRREVVPVKKREIRDPRFDPTHGPVDMGKIEKVYDFLV-DYREDEI 189

Query: 136 EELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAA------ILAEHKKKEREAA 189
           ++L+K +KKT D +  +KLK+ +      L  ES K TDA       IL +H+K+E+E  
Sbjct: 190 KKLRKTIKKTKDEDEKEKLKRDL------LSMESRKKTDAKKRKAREILDKHRKEEKELV 243

Query: 190 KHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMPYRR 244
           K GK P+YLK +E +K+ L++ Y +LKG  +++  IE+RR+K   K+ K MP  R
Sbjct: 244 KEGKTPYYLKKAEQKKRVLLDTYGELKGR-QLDRVIERRRKKVEGKEKKNMPRAR 297

Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway.

Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (taxid: 665079)

>sp|Q0V389|RRP36_PHANO rRNA biogenesis protein RRP36 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=RRP36 PE=3 SV=2

 Score =  103 bits (258), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 107/174 (61%), Gaps = 3/174 (1%)

Query: 72  GRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNL-DVEGFRKRYDFLFENT 130
            R++K+ PM  S+K+ VSR R+VV   K V RDPRF+++ G   D      RY FL  + 
Sbjct: 158 ARSSKHAPMVQSSKRMVSRKRKVVDVKKPVFRDPRFDNMGGAAPDDNTLGNRYSFL-NDY 216

Query: 131 LPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILAEHKKKEREAAK 190
             +E  EL++ +KK+ +    ++LKK++  ++ Q +    K     ++ EHKKKE+E  K
Sbjct: 217 RASEIAELRRTIKKSKNEGEKERLKKQLLSMESQQKARENKEKHQEVIREHKKKEKELVK 276

Query: 191 HGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMPYRR 244
            GK+PF+LK SE +K  LI+++  +K S +++  IE+RR+K  +K+ + MP RR
Sbjct: 277 QGKQPFFLKKSEQKKLALIDRFQNMK-SKQLDKVIERRRKKVTSKERRNMPERR 329

Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway.

Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) (taxid: 321614)

>sp|C7YTL6|RRP36_NECH7 rRNA biogenesis protein RRP36 OS=Nectria haematococca (strain 77-13-4 / ATCC MYA-4622 / FGSC 9596 / MPVI) GN=RRP36 PE=3 SV=1

 Score =  101 bits (251), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 6/172 (3%)

Query: 73  RANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLP 132
           R++K+ P E ++KKPVSR RE++   +R  RDPRF+ L G +D E   K Y FL E    
Sbjct: 135 RSSKHAPQEQTSKKPVSRRREILPDNRRQYRDPRFDPLVGKVDEEKASKAYAFLDEYR-- 192

Query: 133 AEKE--ELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILAEHKKKEREAAK 190
            EKE  +L+ Q+KKT D  A + +K+++  ++ + +    K  +  +L EH+KKE+E   
Sbjct: 193 -EKEMSDLRAQIKKTKDTYAKEDMKRQLQAMESRKKARKRKEEEENLLKEHRKKEKELVA 251

Query: 191 HGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMPY 242
            GK PFYLK SE +KQ L+++Y  +   G+V+  IE++R+K A K+ K + +
Sbjct: 252 QGKTPFYLKRSEQKKQILVKRYEGM-SKGQVDRAIERKRKKVAGKEKKELDW 302

Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway.

Nectria haematococca (strain 77-13-4 / ATCC MYA-4622 / FGSC 9596 / MPVI) (taxid: 660122)

>sp|A4R1G4|RRP36_MAGO7 rRNA biogenesis protein RRP36 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=RRP36 PE=3 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 107/212 (50%), Gaps = 37/212 (17%)

Query: 53  ARSDGSHLVYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRV---VRDPRFES 109
           AR   +  V +  +     GR  K+ P E+S+K+PVSR+REVV+ P       RD RFE 
Sbjct: 118 ARQGNAKTVSKAAASASAPGRKTKSAPEEMSSKRPVSRYREVVKPPPNARPKPRDVRFEQ 177

Query: 110 LCGNLDVEGFRKRYDFLFE-----------------NTLPAEKEELKKQLKKTNDPNAVD 152
                D + FR+ Y FL E                    PA++E+ K +L+K  D     
Sbjct: 178 ELTGEDYQRFRRNYAFLDEYRNDEMAKLREIIARKKGVTPADREDAKLKLRKMED----- 232

Query: 153 KLKKRISWIDKQLRFESTKSTDAAILAEHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKY 212
                      + R +  K  +  ++ EHKKKE+E  K GK+PF+LK SE +K  L++KY
Sbjct: 233 -----------EKRSQDRKDREHELMREHKKKEKELVKQGKKPFFLKKSEQKKLLLMDKY 281

Query: 213 NKLKGSGKVESFIEKRRRKNAAKDHKYMPYRR 244
             +   G+V+  IEK+R+K A K+ K +P+ R
Sbjct: 282 AGM-SKGQVDKAIEKKRKKVAGKEKKQLPFAR 312

Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway.

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
224058605	247	predicted protein [Populus trichocarpa]	0.836	0.846	0.813	2e-88
255537287	252	conserved hypothetical protein [Ricinus	0.916	0.908	0.696	3e-88
449447559	253	PREDICTED: ribosomal RNA processing prot	0.852	0.841	0.708	2e-87
225426777	236	PREDICTED: ribosomal RNA processing prot	0.824	0.872	0.742	4e-85
359807033	251	uncharacterized protein LOC100779255 [Gl	0.824	0.820	0.699	2e-80
255641909	250	unknown [Glycine max]	0.824	0.824	0.699	2e-80
356505463	250	PREDICTED: ribosomal RNA processing prot	0.824	0.824	0.694	2e-79
357488853	252	hypothetical protein MTR_5g058150 [Medic	0.992	0.984	0.596	3e-73
297844142	246	hypothetical protein ARALYDRAFT_471412 [	0.968	0.983	0.612	2e-65
125564429	270	hypothetical protein OsI_32097 [Oryza sa	0.836	0.774	0.584	6e-63

>gi|224058605|ref|XP_002299562.1| predicted protein [Populus trichocarpa] gi|222846820|gb|EEE84367.1| predicted protein [Populus trichocarpa]

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 170/209 (81%), Positives = 189/209 (90%)

Query: 42  LAEITFEDLLKARSDGSHLVYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRV 101
           LAE+TFEDL KA+S+GS  V++K  QEKK GRANKNRP EVS KKPVSRFREVVQ PK+V
Sbjct: 37  LAEVTFEDLQKAKSNGSLTVFKKPDQEKKGGRANKNRPTEVSCKKPVSRFREVVQVPKKV 96

Query: 102 VRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWI 161
           VRDPRFESLCGNLDVEGFRKRYDFLF+N LPAEKEELKKQLKK+NDP  +D+LK+RISWI
Sbjct: 97  VRDPRFESLCGNLDVEGFRKRYDFLFKNNLPAEKEELKKQLKKSNDPKVIDQLKERISWI 156

Query: 162 DKQLRFESTKSTDAAILAEHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKV 221
           +KQ +FESTK TDAAILAEHKKKEREAAK GKRPFYLK S+IRKQRL EKYNKLK SGK+
Sbjct: 157 EKQTKFESTKQTDAAILAEHKKKEREAAKQGKRPFYLKKSDIRKQRLTEKYNKLKASGKL 216

Query: 222 ESFIEKRRRKNAAKDHKYMPYRRPNNNDQ 250
           ESFIEKRR+KNAAKDH+YMPYRR  N++Q
Sbjct: 217 ESFIEKRRKKNAAKDHRYMPYRRSANSEQ 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537287|ref|XP_002509710.1| conserved hypothetical protein [Ricinus communis] gi|223549609|gb|EEF51097.1| conserved hypothetical protein [Ricinus communis]

 Score =  330 bits (847), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 170/244 (69%), Positives = 198/244 (81%), Gaps = 15/244 (6%)

Query: 15  KFKEESEEDNKTTSVTSSEEEEEIE---------------RELAEITFEDLLKARSDGSH 59
           KFK+E+   +KT  V S E E E+                RE+A+ TFE+L KARS+GS 
Sbjct: 3   KFKKETATSSKTQIVESDEAEPELSSYSSLDDEDEESEIEREIADATFEELQKARSNGSI 62

Query: 60  LVYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGF 119
            V++K  QEKK GRANKNRPMEVS KKPVSRFREV QAPK+VVRDPRFESLCG LDV+GF
Sbjct: 63  SVHQKPKQEKKPGRANKNRPMEVSCKKPVSRFREVFQAPKKVVRDPRFESLCGQLDVDGF 122

Query: 120 RKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILA 179
           RKRY+FL+E  LPAE+EE KKQLKK+N+P  +D+LK  IS IDK+L+FESTK TDAAILA
Sbjct: 123 RKRYNFLYEENLPAEREEAKKQLKKSNNPKVIDQLKNHISLIDKELKFESTKQTDAAILA 182

Query: 180 EHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKY 239
           EHKKKEREAAKHGK+PFY+KNSEIRKQRLIEK+NKLK SGK+ SFIEKRR+KNA+KDH+Y
Sbjct: 183 EHKKKEREAAKHGKKPFYMKNSEIRKQRLIEKFNKLKESGKLGSFIEKRRKKNASKDHRY 242

Query: 240 MPYR 243
           MPYR
Sbjct: 243 MPYR 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447559|ref|XP_004141535.1| PREDICTED: ribosomal RNA processing protein 36 homolog [Cucumis sativus] gi|449481495|ref|XP_004156200.1| PREDICTED: ribosomal RNA processing protein 36 homolog [Cucumis sativus]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 151/213 (70%), Positives = 189/213 (88%)

Query: 38  IERELAEITFEDLLKARSDGSHLVYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQA 97
           IERELA++TFE+L +ARSDGSH +Y+K  QEKK+GRANKNRPMEVS++KPVSRFREV+QA
Sbjct: 39  IERELADVTFEELQRARSDGSHSMYQKTKQEKKSGRANKNRPMEVSSRKPVSRFREVIQA 98

Query: 98  PKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKR 157
           PK +VRDPRFESL G LD +GF+KRY F++E TLPAEKEELKKQL+KTNDPN  ++LKK+
Sbjct: 99  PKNMVRDPRFESLSGTLDADGFKKRYSFIYEKTLPAEKEELKKQLRKTNDPNVAEELKKQ 158

Query: 158 ISWIDKQLRFESTKSTDAAILAEHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKG 217
           +SWIDKQ + +STK  DAAILA+HKKKEREAAKHGK+PFYLK SEIRKQRL+EKY  LK 
Sbjct: 159 LSWIDKQFKSDSTKRVDAAILAKHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTNLKS 218

Query: 218 SGKVESFIEKRRRKNAAKDHKYMPYRRPNNNDQ 250
           +GK+++++E++RRKNAAKD +Y+PY+R +  D+
Sbjct: 219 TGKLDAYVERKRRKNAAKDRRYIPYQRSSKLDE 251

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426777|ref|XP_002282782.1| PREDICTED: ribosomal RNA processing protein 36 homolog [Vitis vinifera] gi|297742597|emb|CBI34746.3| unnamed protein product [Vitis vinifera]

 Score =  320 bits (820), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 153/206 (74%), Positives = 174/206 (84%)

Query: 42  LAEITFEDLLKARSDGSHLVYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRV 101
           LA++TFE+L KARSDGSH VYR    EKK GR NKNRPMEVS+KKPVSRFRE +Q PKRV
Sbjct: 29  LADVTFEELQKARSDGSHSVYRMPKSEKKGGRPNKNRPMEVSSKKPVSRFRETIQVPKRV 88

Query: 102 VRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWI 161
           VRDPRFESLCG LD +GFRKRY+FL+E  LPAE+E LKK+LKK NDP  +++LK +ISWI
Sbjct: 89  VRDPRFESLCGTLDADGFRKRYNFLYETELPAEREGLKKELKKANDPKVIEELKNQISWI 148

Query: 162 DKQLRFESTKSTDAAILAEHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKV 221
           DKQL+  S K TD+ ILAEHKKKEREA K GKRPFY+K SEIRKQR IEKYN LK SGK+
Sbjct: 149 DKQLKSGSVKHTDSKILAEHKKKEREATKQGKRPFYIKKSEIRKQRNIEKYNSLKASGKL 208

Query: 222 ESFIEKRRRKNAAKDHKYMPYRRPNN 247
           ESFIEKRRR+NA+KDH+YMPYRR  N
Sbjct: 209 ESFIEKRRRRNASKDHRYMPYRRSGN 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807033|ref|NP_001241593.1| uncharacterized protein LOC100779255 [Glycine max] gi|255639103|gb|ACU19851.1| unknown [Glycine max]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 144/206 (69%), Positives = 177/206 (85%)

Query: 42  LAEITFEDLLKARSDGSHLVYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRV 101
           LA++TFE+L KARS+G+H  ++K  ++KK  RANKNRPME S+KKPVS FREV+QAPK+V
Sbjct: 44  LADVTFEELQKARSNGTHAFFQKPKEDKKLKRANKNRPMEASSKKPVSGFREVIQAPKKV 103

Query: 102 VRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWI 161
           VRDPRFESLCG LD EGFRKRY+FL+EN LPAE++ LKK+LKK  DP  ++++++R+SWI
Sbjct: 104 VRDPRFESLCGKLDPEGFRKRYNFLYENDLPAERQALKKELKKYKDPKRINEIEERVSWI 163

Query: 162 DKQLRFESTKSTDAAILAEHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKV 221
           DKQL+ +S K  DA ILA+HKKKEREA K GKRPFYLK SEIRKQRLIEKYN LK SGK+
Sbjct: 164 DKQLKSDSAKHIDAEILAKHKKKEREATKQGKRPFYLKKSEIRKQRLIEKYNHLKSSGKL 223

Query: 222 ESFIEKRRRKNAAKDHKYMPYRRPNN 247
           E+F+EKRRR+NAAKDH+YMPYRR  +
Sbjct: 224 EAFVEKRRRRNAAKDHRYMPYRRSGD 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641909|gb|ACU21223.1| unknown [Glycine max]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 144/206 (69%), Positives = 177/206 (85%)

Query: 42  LAEITFEDLLKARSDGSHLVYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRV 101
           LA++TFE+L KARS+G+H  ++K  ++KK  RANKNRPME S+KKPVS FREV+QAPK+V
Sbjct: 43  LADVTFEELQKARSNGTHAFFQKPKEDKKLKRANKNRPMEASSKKPVSGFREVIQAPKKV 102

Query: 102 VRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWI 161
           VRDPRFESLCG LD EGFRKRY+FL+EN LPAE++ LKK+LKK  DP  ++++++R+SWI
Sbjct: 103 VRDPRFESLCGKLDPEGFRKRYNFLYENDLPAERQALKKELKKYKDPKRINEIEERVSWI 162

Query: 162 DKQLRFESTKSTDAAILAEHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKV 221
           DKQL+ +S K  DA ILA+HKKKEREA K GKRPFYLK SEIRKQRLIEKYN LK SGK+
Sbjct: 163 DKQLKSDSAKHIDAEILAKHKKKEREATKQGKRPFYLKKSEIRKQRLIEKYNHLKSSGKL 222

Query: 222 ESFIEKRRRKNAAKDHKYMPYRRPNN 247
           E+F+EKRRR+NAAKDH+YMPYRR  +
Sbjct: 223 EAFVEKRRRRNAAKDHRYMPYRRSGD 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505463|ref|XP_003521510.1| PREDICTED: ribosomal RNA processing protein 36 homolog [Glycine max]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 143/206 (69%), Positives = 177/206 (85%)

Query: 42  LAEITFEDLLKARSDGSHLVYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRV 101
           LA++TFE+L KARS+G+H  ++K  ++ K  RANKNRPME S+KKPV+ FREV+QAPK+V
Sbjct: 43  LADVTFEELQKARSNGAHAFFQKPKEDIKLKRANKNRPMEASSKKPVTGFREVIQAPKKV 102

Query: 102 VRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWI 161
           VRDPRFESLCG LD +GFRKRY+FL+EN LPAE++ LKK+LKK  DP  V+++++RISWI
Sbjct: 103 VRDPRFESLCGKLDPDGFRKRYNFLYENDLPAERQALKKELKKYKDPKRVNEIEERISWI 162

Query: 162 DKQLRFESTKSTDAAILAEHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKV 221
           DKQ++ +S K  DA ILA+HKKKEREAAK GKRPFYLK SEIRKQRLIEKYN LK SGK+
Sbjct: 163 DKQVKSDSAKHIDAEILAKHKKKEREAAKQGKRPFYLKKSEIRKQRLIEKYNHLKSSGKL 222

Query: 222 ESFIEKRRRKNAAKDHKYMPYRRPNN 247
           E+F+EKRRR+NAAKDH+YMPYRR  +
Sbjct: 223 EAFVEKRRRRNAAKDHRYMPYRRSGD 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357488853|ref|XP_003614714.1| hypothetical protein MTR_5g058150 [Medicago truncatula] gi|355516049|gb|AES97672.1| hypothetical protein MTR_5g058150 [Medicago truncatula]

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 149/250 (59%), Positives = 198/250 (79%), Gaps = 2/250 (0%)

Query: 1   MKKPNNATAGSSKTKFKEES--EEDNKTTSVTSSEEEEEIERELAEITFEDLLKARSDGS 58
           M K  +    S+     EE+  E+   ++S +  EEEEEIE+ELA++TFE+L KARS+G+
Sbjct: 1   MNKHGSRIPNSNNETHYEENETEDSLSSSSSSEDEEEEEIEKELADVTFEELQKARSNGA 60

Query: 59  HLVYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEG 118
           H  ++K +++KK  RANKNRPME S+KKPV  FR+V+QAPK+VVRDPRFESLCG  D +G
Sbjct: 61  HAFFKKPAEDKKLKRANKNRPMEASSKKPVPAFRDVIQAPKKVVRDPRFESLCGTFDNDG 120

Query: 119 FRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAIL 178
           FRKRY+FL+EN LPAE++ LK+QL+K  DP    ++++RI+W+DKQL+ +STK+ +  IL
Sbjct: 121 FRKRYNFLYENDLPAERQALKRQLRKYKDPERRSEIEERIAWVDKQLKSDSTKNIETQIL 180

Query: 179 AEHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHK 238
           A+HKKKEREAAK GKRPFYLK SEIRKQRL++KYN LK SG +ES+IEK+R++NAAKDH+
Sbjct: 181 AKHKKKEREAAKQGKRPFYLKKSEIRKQRLVDKYNHLKSSGNLESYIEKKRKRNAAKDHR 240

Query: 239 YMPYRRPNNN 248
           +MPYRR   N
Sbjct: 241 FMPYRRSGEN 250

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844142|ref|XP_002889952.1| hypothetical protein ARALYDRAFT_471412 [Arabidopsis lyrata subsp. lyrata] gi|297335794|gb|EFH66211.1| hypothetical protein ARALYDRAFT_471412 [Arabidopsis lyrata subsp. lyrata]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 150/245 (61%), Positives = 187/245 (76%), Gaps = 3/245 (1%)

Query: 1   MKKPNNATAGSSKTKFKEESEEDNKTTSVTSSEEEEEIERELAEITFEDLLKARSDGSHL 60
           MK        SSK  F E+SEED   +  + S  +EE E E  E+TFE++ K R+DGS  
Sbjct: 1   MKGAGKFEGSSSKIVF-EDSEEDEDLSCSSVSSSDEEEEPE-KELTFEEIHKLRADGSKA 58

Query: 61  VYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFR 120
           V  K +Q KK GRANK RPME+S+KKPVSR+REVVQ PK+ VRDPRF  L G LDVEGFR
Sbjct: 59  VPWKPNQVKKTGRANKKRPMELSSKKPVSRYREVVQVPKKEVRDPRFNQLGGTLDVEGFR 118

Query: 121 KRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFE-STKSTDAAILA 179
           KRY+F FE+ LP E+EELKK+LKKT +P  V++LK ++++++K L++E STK+  AAIL 
Sbjct: 119 KRYNFFFEDKLPVEREELKKKLKKTKNPEEVNELKNQLTYVEKMLKYEPSTKNKGAAILT 178

Query: 180 EHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKY 239
           EHKKKEREAAK GKRP+YLK SEIRKQ LIEKYN LK SGK+ S+++KRR+KNA KDH++
Sbjct: 179 EHKKKEREAAKEGKRPYYLKKSEIRKQTLIEKYNSLKESGKLTSYLDKRRKKNATKDHRF 238

Query: 240 MPYRR 244
           MPYRR
Sbjct: 239 MPYRR 243

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125564429|gb|EAZ09809.1| hypothetical protein OsI_32097 [Oryza sativa Indica Group]

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 125/214 (58%), Positives = 167/214 (78%), Gaps = 5/214 (2%)

Query: 35  EEEIERELAEITFEDLLKARSDGSHLVYRKNSQEKKAGRA----NKNRPMEVSAKKPVSR 90
           E E+ER LA++ F +L +AR+DGS L  R  S    A +     +K RPME+S K    R
Sbjct: 53  ERELERALADVPFGELQRARADGS-LGGRGFSAAAAAQKKARRASKKRPMEISTKVRPPR 111

Query: 91  FREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEKEELKKQLKKTNDPNA 150
           FRE++Q PK+VVRDPRFE + G +D EGFRKRY+FLF++ LPAEKE+L+K +KK+ DPNA
Sbjct: 112 FREIIQVPKKVVRDPRFEPVYGPVDKEGFRKRYNFLFDDELPAEKEKLQKSIKKSKDPNA 171

Query: 151 VDKLKKRISWIDKQLRFESTKSTDAAILAEHKKKEREAAKHGKRPFYLKNSEIRKQRLIE 210
           ++++K RI+WIDKQLR    K+ ++ IL EH KKEREAAK GKRP+YLK SEIR+++L+ 
Sbjct: 172 IEEMKSRITWIDKQLRSHPKKNVESEILREHIKKEREAAKTGKRPYYLKKSEIRERKLMN 231

Query: 211 KYNKLKGSGKVESFIEKRRRKNAAKDHKYMPYRR 244
           KYN+LK +GK+++F+EKRRRKNA+KDH+YMPYRR
Sbjct: 232 KYNELKEAGKLDAFMEKRRRKNASKDHRYMPYRR 265

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:2195082	248	AT1G12650 "AT1G12650" [Arabido	0.784	0.790	0.537	3.1e-51
ZFIN|ZDB-GENE-030131-9751	320	rrp36 "ribosomal RNA processin	0.724	0.565	0.324	6.3e-21
DICTYBASE|DDB_G0278751	298	DDB_G0278751 "UPF0399 family p	0.74	0.620	0.312	5.7e-20
RGD|2321693	244	Rrp36 "ribosomal RNA processin	0.708	0.725	0.316	7.2e-20
MGI|MGI:2385053	244	Rrp36 "ribosomal RNA processin	0.708	0.725	0.316	9.2e-20
UNIPROTKB|Q96EU6	259	RRP36 "Ribosomal RNA processin	0.764	0.737	0.305	3.1e-19
UNIPROTKB|A5GFR5	246	RRP36 "Novel protein similar t	0.684	0.695	0.327	3.1e-19
UNIPROTKB|E1BSD7	551	LOC100858699 "Uncharacterized	0.664	0.301	0.335	1.1e-18
UNIPROTKB|A6QNR1	246	RRP36 "Ribosomal RNA processin	0.668	0.678	0.315	1.4e-18
UNIPROTKB|Q58D25	550	KLHDC3 "Kelch domain-containin	0.668	0.303	0.315	1e-17

TAIR|locus:2195082 AT1G12650 "AT1G12650" [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 107/199 (53%), Positives = 137/199 (68%)

Query:    49 DLLKARSDGSHLVYRKNSQEKKAGRA--NKNRPMEVSAKKPVSRFREVVQAPKRVVRDPR 106
             ++ K R+DGS  V  K +Q KK GRA  NKNRPMEVS+KKPVSR+REVV  PK+ VRDPR
Sbjct:    47 EIHKLRADGSKAVPWKPNQVKKTGRARANKNRPMEVSSKKPVSRYREVVHVPKKEVRDPR 106

Query:   107 FESLCGNLDVEGFRKRYDFLFENTLPAXXXXXXXXXXXTNDPNAVDKLKKRISWIDKQLR 166
             F  L G LDVEGFRKRY+F FE+ LP            T +P  +D+LK ++++++K L+
Sbjct:   107 FNQLGGTLDVEGFRKRYNFFFEDKLPVEREELKKKLKKTKNPEEIDELKNQLTYVEKMLK 166

Query:   167 FE-STKSTDAAILXXXXXXXXXXXXXXXXPFYLKNSEIRKQRLIEKYNKLKGSGKVESFI 225
             +E ST++  AAIL                P+YLK SEIRKQ LIEKYN LK SGK+ S++
Sbjct:   167 YEPSTQNKGAAILTEHKKKEREAAKEGKRPYYLKKSEIRKQTLIEKYNSLKESGKLTSYL 226

Query:   226 EKRRRKNAAKDHKYMPYRR 244
             +KRR+KNA KDH++MPYRR
Sbjct:   227 DKRRKKNATKDHRFMPYRR 245

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

ZFIN|ZDB-GENE-030131-9751 rrp36 "ribosomal RNA processing 36 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 60/185 (32%), Positives = 90/185 (48%)

Query:    60 LVYRKNSQEKK---AGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDV 116
             + Y    Q+KK     R NK+RP E+S+K+ V   R+VV   K + RDPRF+ L G    
Sbjct:   131 IAYGDTKQKKKNEPMKRLNKHRPQEISSKQRVPFLRKVVPVKKMISRDPRFDDLSGEYKP 190

Query:   117 EGFRKRYDFLFENTLPAXXXXXXXXXXXTNDPNAVDKLKKRISWIDKQLRFESTKSTDAA 176
             E F + Y F+ +N               T      ++LK  +  +D Q R    +  +  
Sbjct:   191 EIFNQTYKFI-KNIQEKEAQEVRKQLKKTKSKAKQEELKALLRRMDNQQRARQRQEQERE 249

Query:   177 ILXXXXXXXXXXXXXXXXPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKD 236
                               PFYLK S+ +K  L EKY++LK SGK+E+F+ K+R++NA KD
Sbjct:   250 KELEFKRKQRELVGQGHKPFYLKKSDKKKLELAEKYSELKKSGKLENFLSKKRKRNATKD 309

Query:   237 HKYMP 241
              + +P
Sbjct:   310 RRKLP 314

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

DICTYBASE|DDB_G0278751 DDB_G0278751 "UPF0399 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 59/189 (31%), Positives = 97/189 (51%)

Query:    65 NSQEK-KAGRANKNRPMEVSAKKPVSRFREVV-QAPKRVVRDPRFESLCGNLDVEG-FRK 121
             NS+ K K  R + + P+E++A KPVSRFR+VV    K  VRDPRF+SL G    E  +RK
Sbjct:   110 NSKNKYKIKRESSDAPVEMTAMKPVSRFRQVVVNKTKMNVRDPRFDSLSGGKYNEDLYRK 169

Query:   122 RYDFLFENTLPAXXXXXXXXXXXTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILXXX 181
             RY FL ++ +              +D    D+L K+I     QL+ +  K          
Sbjct:   170 RYGFL-DDVIKRDVERMESTWKQMDDCRERDQLYKKIQSKKSQLKTQQLKDQKRETKNKL 228

Query:   182 XXXXXXXXXXXXXPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMP 241
                          P+++ N  +++  L EK+ +LK S K++ F+E +R++ ++K+  ++P
Sbjct:   229 WSNEIESVKKGKTPYHISNKTVKQFELQEKFKQLKASNKLDKFMETKRKRISSKEKTFLP 288

Query:   242 YRRPNNNDQ 250
              RR  + D+
Sbjct:   289 QRRSFDQDE 297

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

RGD|2321693 Rrp36 "ribosomal RNA processing 36 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 57/180 (31%), Positives = 92/180 (51%)

Query:    63 RKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKR 122
             +  S  + A  ++K+RP+E+SAK PV   R+VV   K+V RDPRF+ L G  + E F K 
Sbjct:    63 KTQSPRQPACVSDKHRPLEMSAKVPVPFLRQVVPISKKVARDPRFDDLSGEYNPEVFDKT 122

Query:   123 YDFLFENTLPAXXXXXXXXXXXTNDPNAV-DKLKKRISWIDKQLRFESTKSTDAAILXXX 181
             Y FL  N + A            +      +KL++ +  +++Q   +  +     +    
Sbjct:   123 YQFL--NDIRAKEKQLVKRQLKKHRSGEKHEKLQQLLQRMEQQEMAQQERKQQQELRLAL 180

Query:   182 XXXXXXXXXXXXXPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMP 241
                          P++LK SE R+  L EK+  LK S K+ESF+ ++RR+NA KD +++P
Sbjct:   181 KQERRALAQQGHRPYFLKKSEQRQLALAEKFKDLKRSKKLESFLSRKRRRNAGKDRRHLP 240

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0006364 "rRNA processing" evidence=IEA;ISO

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA;ISO

MGI|MGI:2385053 Rrp36 "ribosomal RNA processing 36 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 57/180 (31%), Positives = 93/180 (51%)

Query:    63 RKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKR 122
             R  S ++    A+K+RP+E+SAK  V   R+VV   K+V RDPRF+ L G+ + E F K 
Sbjct:    63 RTRSPQQPVCVADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGDYNPEVFDKT 122

Query:   123 YDFLFENTLPAXXXXXXXXXXXTNDPNAV-DKLKKRISWIDKQLRFESTKSTDAAILXXX 181
             Y FL  N + A            +      DKL++ +  +++Q   +  +     +    
Sbjct:   123 YQFL--NDIRAKEKQLVKKQLKRHRSGEERDKLQQLLQRMEQQEMAQQERKQQQELRLAL 180

Query:   182 XXXXXXXXXXXXXPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMP 241
                          P++LK SE R+  L EK+ +L+ S K+ESF+ ++RR+NA KD +++P
Sbjct:   181 KQERRAQAQQGHRPYFLKKSEQRQLALAEKFKELRRSKKLESFLSRKRRRNAGKDRRHLP 240

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0006364 "rRNA processing" evidence=ISO

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISO

UNIPROTKB|Q96EU6 RRP36 "Ribosomal RNA processing protein 36 homolog" [Homo sapiens (taxid:9606)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 63/206 (30%), Positives = 104/206 (50%)

Query:    49 DLLKARSDGSHLVYRK----NSQEKKAGR--------ANKNRPMEVSAKKPVSRFREVVQ 96
             +LL+ +S      Y++    NS +K+A R        A+K+RP+E+SAK  V   R+VV 
Sbjct:    52 ELLELQSQVGTKTYKQLVAGNSPKKQASRPPIQNACVADKHRPLEMSAKIRVPFLRQVVP 111

Query:    97 APKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAXXXXXXXXXXXTN-DPNAVDKLK 155
               K+V RDPRF+ L G  + E F K Y FL  N + A            +      +KL+
Sbjct:   112 ISKKVARDPRFDDLSGEYNPEVFDKTYQFL--NDIRAKEKELVKKQLKKHLSGEEHEKLQ 169

Query:   156 KRISWIDKQLRFESTKSTDAAILXXXXXXXXXXXXXXXXPFYLKNSEIRKQRLIEKYNKL 215
             + +  +++Q   +  +     +                 P++LK SE R+  L EK+ +L
Sbjct:   170 QLLQRMEQQEMAQQERKQQQELHLALKQERRAQAQQGHRPYFLKKSEQRQLALAEKFKEL 229

Query:   216 KGSGKVESFIEKRRRKNAAKDHKYMP 241
             K S K+E+F+ ++RR+NA KD +++P
Sbjct:   230 KRSKKLENFLSRKRRRNAGKDRRHLP 255

GO:0005730 "nucleolus" evidence=IDA

GO:0006364 "rRNA processing" evidence=IDA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IDA

UNIPROTKB|A5GFR5 RRP36 "Novel protein similar to vertebrate chromosome 6 open reading frame 153 (C6orf153)" [Sus scrofa (taxid:9823)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 57/174 (32%), Positives = 90/174 (51%)

Query:    69 KKAGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFE 128
             +KA  A+K+RP+E+SAK  V   R+VV   K+V RDPRF+ L G  + E F K Y FL  
Sbjct:    71 QKACVADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTYQFL-- 128

Query:   129 NTLPAXXXXXXXXXXXTNDPNAV-DKLKKRISWIDKQLRFESTKSTDAAILXXXXXXXXX 187
             N + A                   +KL++ +  +++Q   +  +     +          
Sbjct:   129 NDIRAREKELVKKQLKKRRSGEEHEKLQQLLQRMEQQDMAQQERKRQQELRLALKQERRA 188

Query:   188 XXXXXXXPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMP 241
                    P++LK SE R+  L EK+ +LK S K+ESF+ ++RR+NA KD +++P
Sbjct:   189 QAQQGHRPYFLKKSEQRQLVLAEKFKELKRSKKLESFLSRKRRRNAGKDRRHLP 242

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|E1BSD7 LOC100858699 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 233 (87.1 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 56/167 (33%), Positives = 86/167 (51%)

Query:    78 RPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAXXXX 137
             RP+E+SAKKP+   R+VV   K+V RDPRF+ L G  + E F K Y FL +         
Sbjct:   384 RPVEMSAKKPMPFLRQVVPVTKKVHRDPRFDDLSGEYNPEIFMKTYSFL-DTIKKQEKEM 442

Query:   138 XXXXXXXTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILXXXXXXXXXXXXXXXXPFY 197
                      +    +KL++ ++ + +Q + +  +                       PF+
Sbjct:   443 VQKQLKKCRNVEQKEKLQQLLNRMTQQEQAQKKQQKRRERELTLKRQQRELAKQGKKPFF 502

Query:   198 LKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMPYRR 244
             LK SE RK  L EKY +LK SGK+ESF+ K+R++NA KD + +P ++
Sbjct:   503 LKKSEKRKLELAEKYAELKRSGKLESFLNKKRKRNAVKDKRRLPSQK 549

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|A6QNR1 RRP36 "Ribosomal RNA processing protein 36 homolog" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 53/168 (31%), Positives = 85/168 (50%)

Query:    74 ANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPA 133
             A+K+RP+E+SAK  V   R+VV   K+V RDPRF+ L G  + E F K Y FL ++    
Sbjct:    76 ADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTYQFL-DDIRAR 134

Query:   134 XXXXXXXXXXXTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILXXXXXXXXXXXXXXX 193
                               +KL+  +  +++Q   +  +     +                
Sbjct:   135 EKELVKKQLKKHRSGEEHEKLQHLLQRMEQQEMAQKERKRQQELRLALKQERRAQAQQGH 194

Query:   194 XPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMP 241
              P++LK SE R+  L EK+ +LK S K+ESF+ ++RR+NA KD +++P
Sbjct:   195 RPYFLKKSEQRQLVLAEKFKELKRSKKLESFLSRKRRRNAGKDRRHLP 242

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

UNIPROTKB|Q58D25 KLHDC3 "Kelch domain-containing protein 3" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 53/168 (31%), Positives = 85/168 (50%)

Query:    74 ANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPA 133
             A+K+RP+E+SAK  V   R+VV   K+V RDPRF+ L G  + E F K Y FL ++    
Sbjct:   380 ADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTYQFL-DDIRAR 438

Query:   134 XXXXXXXXXXXTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILXXXXXXXXXXXXXXX 193
                               +KL+  +  +++Q   +  +     +                
Sbjct:   439 EKELVKKQLKKHRSGEEHEKLQHLLQRMEQQEMAQKERKRQQELRLALKQERRAQAQQGH 498

Query:   194 XPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMP 241
              P++LK SE R+  L EK+ +LK S K+ESF+ ++RR+NA KD +++P
Sbjct:   499 RPYFLKKSEQRQLVLAEKFKELKRSKKLESFLSRKRRRNAGKDRRHLP 546

GO:0005737 "cytoplasm" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A6QNR1	RRP36_BOVIN	No assigned EC number	0.3452	0.84	0.8536	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0008054001	hypothetical protein (247 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•					0.542
	grail3.0101007501	hypothetical protein (229 aa)				•					0.482
	gw1.I.4832.1	hypothetical protein (422 aa)				•					0.479
	gw1.XV.2119.1	hypothetical protein (465 aa)				•					0.455
	estExt_Genewise1_v1.C_LG_IV0024	SubName- Full=Putative uncharacterized protein; (604 aa)				•					0.445
	gw1.I.2609.1	hypothetical protein (220 aa)				•					0.444
	eugene3.00090493	hypothetical protein (840 aa)				•					0.440
	estExt_fgenesh4_pm.C_1070023	hypothetical protein (554 aa)				•					0.436
	grail3.0106016302	hypothetical protein (217 aa)				•					0.435
	grail3.0014029901	hypothetical protein (52 aa)				•					0.431

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	250
pfam06102	168	pfam06102, DUF947, Domain of unknown function (DUF	1e-35

>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947)

 Score =  124 bits (313), Expect = 1e-35
 Identities = 77/168 (45%), Positives = 115/168 (68%), Gaps = 3/168 (1%)

Query: 73  RANKNRPMEVSAKKPVSRFREV--VQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENT 130
           R +K+ PME+S+KKPVSR R++  V+  K  VRDPRF+SL G L+++ FRK Y FL ++ 
Sbjct: 2   RKSKHAPMELSSKKPVSRKRDIIEVEKKKPKVRDPRFDSLSGKLNLDKFRKNYKFL-DDY 60

Query: 131 LPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILAEHKKKEREAAK 190
              E EEL+K LKKT D    ++LK+ +  +  +L+    K  +  IL EHKK+E+E  K
Sbjct: 61  REKEIEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKELIK 120

Query: 191 HGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHK 238
            GK+P+YLK SEI+K  L +K+++LK S +++  +EK+R+KNA K+ K
Sbjct: 121 EGKKPYYLKKSEIKKLVLKKKFDELKKSKQLDKALEKKRKKNAGKEKK 168

Family of eukaryotic proteins with unknown function. Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
PF06102	168	DUF947: Domain of unknown function (DUF947); Inter	100.0
KOG3190	256	consensus Uncharacterized conserved protein [Funct	100.0

>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function

Probab=100.00  E-value=3.2e-55  Score=374.92  Aligned_cols=166  Identities=50%  Similarity=0.795  Sum_probs=162.9

Q ss_pred             cccCCCCCCcccCCCCCCcccccccC--CCCCCCCCCcccCCCCCchhhhhhccccccccCchHHHHHHHHHHhhcCCHH
Q 025603           72 GRANKNRPMEVSAKKPVSRFREVVQA--PKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEKEELKKQLKKTNDPN  149 (250)
Q Consensus        72 kR~nK~aP~E~SSKkpVsr~R~vv~v--~k~~~RDPRFd~l~G~~n~~~f~k~Y~FL~d~~r~~E~~~Lkk~Lkk~kd~~  149 (250)
                      ||.|||||+||||++|||++|+||++  +++.+||||||++||+||.++|.++|+||+|+ +..|+++|+++|+.++|++
T Consensus         1 KR~~K~aP~E~SSKk~v~r~r~v~~~~~~k~~~rDPRFd~~~G~~~~~~f~k~Y~FL~d~-r~~E~~~Lk~~lk~~k~~~   79 (168)
T PF06102_consen    1 KRSNKNAPREMSSKKPVSRFRQVVQVEKKKKKRRDPRFDSLSGEFNEDLFRKNYGFLDDY-REKEIKELKKQLKKTKDPE   79 (168)
T ss_pred             CCCCCCCCccccCCCCCCCcccccCccccCCCCCCCCcCccccccCHHHHHHhhhhHHHH-HHHHHHHHHHHHHHcCCHH
Confidence            68999999999999999999999999  88999999999999999999999999999885 8999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 025603          150 AVDKLKKRISWIDKQLRFESTKSTDAAILAEHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRR  229 (250)
Q Consensus       150 ~~e~lk~~L~r~e~q~k~~~~k~~~~e~~~e~kk~Ere~vk~GKkPfflKkse~Kk~~l~~ky~~Lk~~gkl~K~leKkR  229 (250)
                      ++++|+.+|++|++++.+...++.+++++.+|+++|+++|++|++|||||+||+++++|+++|++|+++|+|++||+++|
T Consensus        80 ~~e~lk~~L~~~~~q~~~~~~~~~~~e~~~~~kk~E~e~v~~GKkP~flKkse~Kk~~l~~kf~~lk~~~kl~K~lekkr  159 (168)
T PF06102_consen   80 EREELKRELQRMESQLKARKRKDREREVKKEHKKEEREKVKQGKKPFFLKKSEKKKLELKEKFKELKKSGKLDKYLEKKR  159 (168)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccc
Q 025603          230 RKNAAKDHK  238 (250)
Q Consensus       230 KK~a~Kerk  238 (250)
                      ||+++||++
T Consensus       160 KK~~~Ke~k  168 (168)
T PF06102_consen  160 KKNASKERK  168 (168)
T ss_pred             hhhcccccC
Confidence            999999986

>KOG3190 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=7.3e-53  Score=373.11  Aligned_cols=232  Identities=39%  Similarity=0.590  Sum_probs=188.9

Q ss_pred             CCCCCCcccccccccccccCCCCC--CchhHHHHHHHhccCCHHHHHHHHhcCCcc-hhccc-----chhhhccccCCCC
Q 025603            7 ATAGSSKTKFKEESEEDNKTTSVT--SSEEEEEIERELAEITFEDLLKARSDGSHL-VYRKN-----SQEKKAGRANKNR   78 (250)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~eLs~~sF~~L~k~q~~~~~~-~~~k~-----~~~~~~kR~nK~a   78 (250)
                      +..||..+...++|++|++++...  ..|+.....   -+++|+++.+||.+.++. .++.+     ......+-.+|||
T Consensus        12 ~~~gs~rk~~~~~sEEd~~d~~p~~k~~d~~~~~e---~~~~~ee~~klqs~~~~kty~~~~~~~~~~~q~k~k~k~KHr   88 (256)
T KOG3190|consen   12 SEDGSERKEGSEDSEEDEDDEDPRLKFRDEISKTE---LGKVFEEKEKLQSKLGNKTYFGTSEQDKKRGQAKKKAKGKHR   88 (256)
T ss_pred             cccccccccccccchhhcCCccchhcchhhhcccc---ccccHHHHHHHHHhhcccccccccccccchhhcccccccccC
Confidence            456788888998888886554433  444332221   168999999999774433 33221     2222334489999


Q ss_pred             CCcccCCCCCCcccccccCCCCCCCCCCcccCCCCCchhhhhhccccccccCchHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 025603           79 PMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRI  158 (250)
Q Consensus        79 P~E~SSKkpVsr~R~vv~v~k~~~RDPRFd~l~G~~n~~~f~k~Y~FL~d~~r~~E~~~Lkk~Lkk~kd~~~~e~lk~~L  158 (250)
                      |+|||||+|||+||+||+++++..||||||.++|+||.++|++||.|||+ ||..|| +|++.|.+++.+++++++.+  
T Consensus        89 P~E~SSKkpVsr~R~Vv~~~kk~~rDPRFD~lsG~l~~~~~~knYqFLde-~R~~E~-eLkk~l~~~k~~~~~~q~~r--  164 (256)
T KOG3190|consen   89 PREMSSKKPVSRFRNVVGGPKKKKRDPRFDALSGDLDEECFRKNYQFLDE-IRVKEI-ELKKELNKAKAEEKIDQLER--  164 (256)
T ss_pred             chhhhccCCchHHhhccCCccccccCcchhhccCccCHHHHHhhhhhHhh-hhhhHH-HHHHHHHhhhchHHHHHHHH--
Confidence            99999999999999999999999999999999999999999999999987 589999 89999999988777665554  


Q ss_pred             HHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhhhccchhHHHHHHHHhhhhc
Q 025603          159 SWIDKQLRFESTKS----TDAAILAEHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAA  234 (250)
Q Consensus       159 ~r~e~q~k~~~~k~----~~~e~~~e~kk~Ere~vk~GKkPfflKkse~Kk~~l~~ky~~Lk~~gkl~K~leKkRKK~a~  234 (250)
                       .|+.++.+.+.+.    ...+++.+++..+++.+++|++|||||+|++++++|+++|++|+.+++|++||+|+|||+|+
T Consensus       165 -q~~~~~~s~ker~~~ekr~~~~~~elk~~e~e~~k~G~~Py~LKKsE~Rkl~~~~Ky~~lK~skkLdkylerKRkk~a~  243 (256)
T KOG3190|consen  165 -QMTQHLMSTKERTQAEKRHAETRKELKDDERERAKEGKRPYFLKKSEQRKLDQEEKYKELKKSKKLDKYLERKRKKRAG  243 (256)
T ss_pred             -HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence             4444444433332    25589999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCC
Q 025603          235 KDHKYMPYRRPN  246 (250)
Q Consensus       235 Kerk~lP~~R~~  246 (250)
                      |++++||++|.+
T Consensus       244 Ke~k~~P~~~~~  255 (256)
T KOG3190|consen  244 KEKKHLPFERYG  255 (256)
T ss_pred             hhhhcCcccccC
Confidence            999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 3e-08
 Identities = 36/218 (16%), Positives = 71/218 (32%), Gaps = 40/218 (18%)

Query: 5   NNATAGSSKTKFKEESEEDNKTTSVTSSEEEEEIERELAEITFEDLLKARSDGSHLVYRK 64
                 S+ T      +  + T +    +E + +  +  +   +DL +     +      
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLT---PDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-- 330

Query: 65  NSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYD 124
            S   ++ R                 ++ V       + +         L+   +RK +D
Sbjct: 331 -SIIAESIRDGLATW---------DNWKHVNCDKLTTIIESSLN----VLEPAEYRKMFD 376

Query: 125 FLF---ENT-LPAEK-EELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILA 179
            L     +  +P      +   + K++    V+KL K  S ++KQ   EST S  +  L 
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQ-PKESTISIPSIYLE 434

Query: 180 EHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKG 217
              K E E A H              + +++ YN  K 
Sbjct: 435 LKVKLENEYALH--------------RSIVDHYNIPKT 458

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00