Citrus Sinensis ID: 025649

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS
Secondary Structure (PSIPRED)
cEEEEEccccEEEccccccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEEcccccccccccccEEcccccccccEEEEccccccEEEEEcccccEEEEEEcccccEEEEEEEcccEEEEEEcccccccccccEEEEEEccccEEEEcccccccccccEEEEEEccccccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEEccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEccHHHHHHHHHcccccccccEEEccccccHEEEcccccEEEEEEccccccEEEEEccccccccccccccccccEEEEEccccccccccccEEEEEEcccEEEEEEccccHcccccccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEEccccccccEEEEcccccEEEEEEccccccccccccccEEEEEEEccccEEEEEEcccccccEEEEEcccEEEEEEcc
Coil and Loop (DISEMBL)
MWQIIDIRQHCLYkslraghssicssvqfipwkpwevisggldskLVMWdfskgrpnkivnfglpenngnagqcynpafvhaiaipdadmldktnKICVVAKGDGVVDVINIESelnisrsksttkplkgsqstskvnIRDAEMEILdqsggkrlhldysvgghtAAASCVAFSMFGERGKylisggndklvkvwdcsrfqgvqtsinnDLLIKNINLNKKVNWLcttptesenlvvcdtskvVKVYSIS
Flexible Loop (DISEMBL)
MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIeselnisrsksttkplkgsqstskvnirdAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVqtsinndllikniNLNKKVNWLCTtptesenlvvcdtskvvkvysis
Low Complexity Region (SEG)
MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSinndllikninlnkkvnWLCTTPTESENLVVCDTSKVVKVYSIS
Disordered region (IsUnstruct)
*WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES**************************************KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY***
Disordered Region (DISOPRED)
MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL*******KVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS
Disordered Region (DISEMBL)
MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR****************VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS
Disordered Region (DISPRO)
MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE************************************GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV**SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	250	2.2.26 [Sep-21-2011]
Q7Z5U6	358	WD repeat-containing prot	yes	no	0.792	0.553	0.241	8e-11
Q9DB94	358	WD repeat-containing prot	yes	no	0.796	0.555	0.228	1e-10
Q32KQ2	358	WD repeat-containing prot	yes	no	0.792	0.553	0.234	1e-10
Q10281	314	Guanine nucleotide-bindin	yes	no	0.9	0.716	0.221	1e-05
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.608	0.099	0.294	7e-05

>sp|Q7Z5U6|WDR53_HUMAN WD repeat-containing protein 53 OS=Homo sapiens GN=WDR53 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 108/286 (37%), Gaps = 88/286 (30%)

Query: 3   QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF 62
           +I+D+    + +SL+  HS+ICSSV F P +P  ++S GLD ++++W   K RP  I N 
Sbjct: 119 KILDLENKKVIRSLKR-HSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPLWITNL 177

Query: 63  GLPENN-----GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 117
              E        + GQ  NPA  H+I++           I      DG V +  +     
Sbjct: 178 QEDETEEMEGPQSPGQLLNPALAHSISVASC------GNIFSCGAEDGKVRIFRVM---- 227

Query: 118 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG 177
                                             G +   +    GHT+  S V F    
Sbjct: 228 ----------------------------------GVKCEQELGFKGHTSGVSQVCFL--- 250

Query: 178 ERGKYLISGGNDKLVKVWD-------------------------CSRFQGVQTSIN---- 208
                L++GGND  + +WD                         C++ QG  T+ +    
Sbjct: 251 PESYLLLTGGNDGKITLWDANSEVEKKQKSPTKRTHRKKPKRGTCTK-QGGNTNASVTDE 309

Query: 209 ----NDLLIKNINLNKKVNWLCTTPTES-ENLVVCDTSKVVKVYSI 249
               N L   NI   +KVNWL  T  +  +N++V D +  + VY +
Sbjct: 310 EEHGNILPKLNIEHGEKVNWLLGTKIKGHQNILVADQTSCISVYPL 355

Homo sapiens (taxid: 9606)

>sp|Q9DB94|WDR53_MOUSE WD repeat-containing protein 53 OS=Mus musculus GN=Wdr53 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 108/285 (37%), Gaps = 86/285 (30%)

Query: 3   QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF 62
           +I+D+ +  + +SL+  HS+ICSSV F P +P  ++S GLD ++++W   K RP  I N 
Sbjct: 119 KILDLEKKKVTRSLKR-HSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPVWITNL 177

Query: 63  GLPENN-----GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 117
              E          G+  NPA  H++++           I      DG V +  +     
Sbjct: 178 QEDETEETEGPQTPGRLLNPALAHSVSVASC------GNIFSCGAEDGKVRIFRVM---- 227

Query: 118 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG 177
                                             G +   +    GHT   S V F    
Sbjct: 228 ----------------------------------GVKCERELGFKGHTLGVSQVCFL--- 250

Query: 178 ERGKYLISGGNDKLVKVWDC-------------------------------SRFQGVQTS 206
                L++GGND  +++WD                                SR  G +  
Sbjct: 251 PESSLLLTGGNDGRIRLWDVSGKMEKLQKSPARHIHRKKAKRAACPTQGGNSRAPGAEDE 310

Query: 207 INNDLLIK-NINLNKKVNWLCTTPTE-SENLVVCDTSKVVKVYSI 249
            +  +L K +I   +KVNWL +T  + +++++V D +  V VY +
Sbjct: 311 GHAKILPKLDIEHGEKVNWLLSTKIKGNKSILVADQTSCVSVYPL 355

Mus musculus (taxid: 10090)

>sp|Q32KQ2|WDR53_BOVIN WD repeat-containing protein 53 OS=Bos taurus GN=WDR53 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 110/286 (38%), Gaps = 88/286 (30%)

Query: 3   QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF 62
           +I+D+    + +SL+  HS+ICSSV F P +P  ++S GLD ++++W+  K RP  I N 
Sbjct: 119 KILDLENKKISRSLKR-HSNICSSVAFRPQRPQSLVSCGLDMQVMLWNLRKARPLWITNL 177

Query: 63  GLPENN-----GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 117
              E        + GQ  NPA  H++++           +      DG V +  +     
Sbjct: 178 QEDETEEMESPQSPGQLLNPALAHSVSVASC------GNVFSCGAEDGKVRIFRVM---- 227

Query: 118 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG 177
                                             G +   +    GH+   S V F    
Sbjct: 228 ----------------------------------GVKCEQELGFKGHSLGVSQVCFL--- 250

Query: 178 ERGKY-LISGGNDKLVKVWDCS--------------------------RFQGVQTSINND 210
            R  Y L++GGND  +K+WD S                          +  G   S+  +
Sbjct: 251 -RESYLLLTGGNDGKIKLWDVSSEIEKKHKSPTKHTHRKKTKRAAYTKQGGGTHASVTGE 309

Query: 211 -----LLIK-NINLNKKVNWLCTTPTES-ENLVVCDTSKVVKVYSI 249
                +L K +I   +KVNWL +T  +   N++V D +  + VY +
Sbjct: 310 DEHGKILPKLSIEHGEKVNWLLSTKIKGYRNILVADQTSCISVYPL 355

Bos taurus (taxid: 9913)

>sp|Q10281|GBLP_SCHPO Guanine nucleotide-binding protein subunit beta-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rkp1 PE=1 SV=3

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 108/244 (44%), Gaps = 19/244 (7%)

Query: 9   QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN- 67
           +  + ++   GHS   +S+   P  P  ++SG  D  +++W+  +      VN+G+ +  
Sbjct: 3   EQLVLRATLEGHSGWVTSLSTAPENPDILLSGSRDKSIILWNLVRDD----VNYGVAQRR 58

Query: 68  -NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE-LNISRSKSTT 125
             G++    + A         +   DKT ++  + KG+     +   S+ L++S S    
Sbjct: 59  LTGHSHFVSDCALSFDSHYALSASWDKTIRLWDLEKGECTHQFVGHTSDVLSVSISPDNR 118

Query: 126 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS 185
           + + GS        RD  ++I +  G  +  +  + GGH+   SCV FS   +   + +S
Sbjct: 119 QVVSGS--------RDKTIKIWNIIGNCKYTI--TDGGHSDWVSCVRFSPNPDNLTF-VS 167

Query: 186 GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 245
            G DK VKVWD   F    +   +   +  + ++   + LC +      L++ D ++   
Sbjct: 168 AGWDKAVKVWDLETFSLRTSHYGHTGYVSAVTISPDGS-LCASGGRDGTLMLWDLNESTH 226

Query: 246 VYSI 249
           +YS+
Sbjct: 227 LYSL 230

May be a receptor for protein kinase C in the regulation of actin cytoskeleton organization during cell wall synthesis and morphogenesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 47.8 bits (112), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 78/187 (41%), Gaps = 35/187 (18%)

Query: 19   GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78
            GH+S   SV F P     + SG  D  + +WD S G    I         G+ G  Y+ A
Sbjct: 946  GHTSRVRSVVFSP-NSLMLASGSSDQTVRLWDISSGECLYIFQ-------GHTGWVYSVA 997

Query: 79   FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-------ELNISRSKSTTKPLKGS 131
            F       D  ML           GD  V + +I S       + + S  +S      G+
Sbjct: 998  FN-----LDGSML-------ATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGA 1045

Query: 132  QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 191
               S  +  D  + + D S G  L   Y++ GHT   SCV   +F   G  L SGG+D++
Sbjct: 1046 MLASGSD--DQTVRLWDISSGNCL---YTLQGHT---SCVRSVVFSPDGAMLASGGDDQI 1097

Query: 192  VKVWDCS 198
            V++WD S
Sbjct: 1098 VRLWDIS 1104

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:2171953	360	AT5G45760 "AT5G45760" [Arabido	0.568	0.394	0.653	1.1e-46
MGI|MGI:1916230	358	Wdr53 "WD repeat domain 53" [M	0.328	0.229	0.352	1.4e-12
POMBASE|SPAC6B12.15	314	cpc2 "RACK1 ortholog Cpc2" [Sc	0.86	0.684	0.239	2.3e-07
ZFIN|ZDB-GENE-040426-1993	416	poc1a "POC1 centriolar protein	0.236	0.141	0.378	0.00056
UNIPROTKB|F1NUJ8	320	POC1A "Uncharacterized protein	0.196	0.153	0.418	0.00087

TAIR|locus:2171953 AT5G45760 "AT5G45760" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 98/150 (65%), Positives = 120/150 (80%)

Query:     3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF 62
             +IID+ Q CLYK+LRAGH+SICSSVQFIPW+PWEVI+GGLDSKLV+WDFSKGR  KI++F
Sbjct:   130 KIIDLGQKCLYKTLRAGHTSICSSVQFIPWRPWEVITGGLDSKLVLWDFSKGRSQKIIDF 189

Query:    63 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 122
             G   NN N+GQC NPAFVH+IAIP+ DM+DK +KIC VA+GDG+V++INIESEL  SR K
Sbjct:   190 GSDTNN-NSGQCLNPAFVHSIAIPEMDMVDKLDKICAVARGDGIVNLINIESEL--SR-K 245

Query:   123 STTKPLKGSQSTSKVNIRDAEMEILDQSGG 152
              T+   KGS S+S  N+   +   LD S G
Sbjct:   246 GTSS--KGSSSSSSNNV--VKRVCLDYSVG 271

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1916230 Wdr53 "WD repeat domain 53" [Mus musculus (taxid:10090)]

 Score = 142 (55.0 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
 Identities = 31/88 (35%), Positives = 51/88 (57%)

Query:     3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF 62
             +I+D+ +  + +SL+  HS+ICSSV F P +P  ++S GLD ++++W   K RP  I N 
Sbjct:   119 KILDLEKKKVTRSLKR-HSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPVWITNL 177

Query:    63 G---LPENNG--NAGQCYNPAFVHAIAI 85
                   E  G    G+  NPA  H++++
Sbjct:   178 QEDETEETEGPQTPGRLLNPALAHSVSV 205

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC6B12.15 cpc2 "RACK1 ortholog Cpc2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 139 (54.0 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 56/234 (23%), Positives = 101/234 (43%)

Query:    19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENN--GNAGQCYN 76
             GHS   +S+   P  P  ++SG  D  +++W+  +      VN+G+ +    G++    +
Sbjct:    13 GHSGWVTSLSTAPENPDILLSGSRDKSIILWNLVRDD----VNYGVAQRRLTGHSHFVSD 68

Query:    77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE-LNISRSKSTTKPLKGSQSTS 135
              A         +   DKT ++  + KG+     +   S+ L++S S    + + GS    
Sbjct:    69 CALSFDSHYALSASWDKTIRLWDLEKGECTHQFVGHTSDVLSVSISPDNRQVVSGS---- 124

Query:   136 KVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
                 RD  ++I +  G  +  +  + GGH+   SCV FS   +   + +S G DK VKVW
Sbjct:   125 ----RDKTIKIWNIIGNCKYTI--TDGGHSDWVSCVRFSPNPDNLTF-VSAGWDKAVKVW 177

Query:   196 DCSRFQGVQTSXXXXXXXXXXXXXXXXXWLCTTPTESENLVVCDTSKVVKVYSI 249
             D   F  ++TS                  LC +      L++ D ++   +YS+
Sbjct:   178 DLETFS-LRTSHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWDLNESTHLYSL 230

GO:0005080 "protein kinase C binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0031137 "regulation of conjugation with cellular fusion" evidence=IGI

GO:0031139 "positive regulation of conjugation with cellular fusion" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IGI

GO:0032995 "regulation of fungal-type cell wall biogenesis" evidence=IGI

GO:0034613 "cellular protein localization" evidence=IMP

GO:0035556 "intracellular signal transduction" evidence=IMP

GO:0043022 "ribosome binding" evidence=IDA

GO:2000766 "negative regulation of cytoplasmic translation" evidence=ISO

ZFIN|ZDB-GENE-040426-1993 poc1a "POC1 centriolar protein homolog A (Chlamydomonas)" [Danio rerio (taxid:7955)]

 Score = 95 (38.5 bits), Expect = 0.00056, Sum P(2) = 0.00056
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query:   141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 200
             D+ ++ILD   G+ L   Y++ GH  +ASCV+FS  G++     S G+D+ V VW  + F
Sbjct:   249 DSTLKILDLLEGRLL---YTLHGHQGSASCVSFSRSGDQ---FASAGSDQQVMVWR-TNF 301

Query:   201 QGVQTS 206
               V  S
Sbjct:   302 DSVDYS 307

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0030030 "cell projection organization" evidence=IEA

UNIPROTKB|F1NUJ8 POC1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 99 (39.9 bits), Expect = 0.00087, Sum P(2) = 0.00087
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query:   141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 195
             D+ ++ILD   G+ L   Y++ GH   A+CVAFS  G+   +  SGG+D+ V VW
Sbjct:   251 DSTLKILDLLEGRLL---YTLHGHQGPATCVAFSRTGD---FFASGGSDEQVMVW 299

GO:0005814 "centriole" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00035839001 SubName- Full=Chromosome chr10 scaffold_81, whole genome shotgun sequence; (375 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	250
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 42/238 (17%), Positives = 83/238 (34%), Gaps = 43/238 (18%)

Query: 19  GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78
           GH+   + V F P     + +G  D  + +WD   G   + +                  
Sbjct: 7   GHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLRTLK----------------- 48

Query: 79  FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 138
             H   + D         +   +  D  + + ++E+   +      T  +     +    
Sbjct: 49  -GHTGPVRDVAASADGTYLASGSS-DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106

Query: 139 I-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK 193
           I     RD  +++ D   GK L    ++ GHT   + VAFS     G ++ S   D  +K
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCL---TTLRGHTDWVNSVAFS---PDGTFVASSSQDGTIK 160

Query: 194 VWDCSRFQGVQTSINNDLLIKNINLNKK-VNWLCTTPTESENLVVCDTSKVVKVYSIS 250
           +WD          +     +  +  +   VN +  +P   E L+   +   +K++ +S
Sbjct: 161 LWD----------LRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLS 207

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 196
            ++ GHT   + VAFS     G  L SG +D  V+VWD
Sbjct: 5   RTLKGHTGPVTSVAFS---PDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 43/206 (20%), Positives = 68/206 (33%), Gaps = 45/206 (21%)

Query: 18  AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 77
            GH+S  SSV F P     + S   D  + +WD   G+    +               + 
Sbjct: 90  TGHTSYVSSVAFSPDGRI-LSSSSRDKTIKVWDVETGKCLTTLRG-------------HT 135

Query: 78  AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST-SK 136
            +V+++A                +  DG + + ++       R+      L G     + 
Sbjct: 136 DWVNSVAF------SPDGTFVASSSQDGTIKLWDL-------RTGKCVATLTGHTGEVNS 182

Query: 137 VNIRDAEMEILDQSGGKRLHL-DYSVG-------GHTAAASCVAFSMFGERGKYLISGGN 188
           V       ++L  S    + L D S G       GH    + VAFS     G  L SG  
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS---PDGYLLASGSE 239

Query: 189 DKLVKVWD------CSRFQGVQTSIN 208
           D  ++VWD           G   S+ 
Sbjct: 240 DGTIRVWDLRTGECVQTLSGHTNSVT 265

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 163 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 196
           GHT   + VAFS     GKYL SG +D  +K+WD
Sbjct: 10  GHTGPVTSVAFS---PDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 63/178 (35%)

Query: 19  GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78
           GH+   +SV F P    +++S   D  + +WD S G+        L    G+     + A
Sbjct: 175 GHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKC-------LGTLRGHENGVNSVA 226

Query: 79  FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 138
           F                 +      DG + V ++ +                        
Sbjct: 227 F------------SPDGYLLASGSEDGTIRVWDLRTG----------------------- 251

Query: 139 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 196
                                ++ GHT + + +A+S     GK L SG  D  +++WD
Sbjct: 252 -----------------ECVQTLSGHTNSVTSLAWS---PDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 8e-04
 Identities = 42/234 (17%), Positives = 89/234 (38%), Gaps = 20/234 (8%)

Query: 19  GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 78
           GHS   +S+ F P          LD  + +WD   G+P   +       +  +   ++P 
Sbjct: 153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA---GHTDPVSSLAFSPD 209

Query: 79  FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 138
               IA   +   D T ++  ++ G  +   ++  S+  +S        L    S   + 
Sbjct: 210 GGLLIASGSS---DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIR 266

Query: 139 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 198
           + D               L  ++ GH+++   VAFS     GK L SG +D  V++WD  
Sbjct: 267 LWDLRSS---------SSLLRTLSGHSSSVLSVAFS---PDGKLLASGSSDGTVRLWDLE 314

Query: 199 --RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 250
             +     T   ++  + +++ +   + L +  ++   + + D      + ++ 
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.91
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.88
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.87
KOG1274	933	consensus WD40 repeat protein [General function pr	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.86
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.86
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.86
KOG2055	514	consensus WD40 repeat protein [General function pr	99.86
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.86
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.85
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG1310	758	consensus WD40 repeat protein [General function pr	99.84
KOG2055	514	consensus WD40 repeat protein [General function pr	99.84
KOG0639	705	consensus Transducin-like enhancer of split protei	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.84
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.83
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.83
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.83
KOG1274	933	consensus WD40 repeat protein [General function pr	99.83
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.81
KOG2096	420	consensus WD40 repeat protein [General function pr	99.81
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.79
KOG4328	498	consensus WD40 protein [Function unknown]	99.79
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.79
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.79
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.77
KOG1188	376	consensus WD40 repeat protein [General function pr	99.77
COG2319	466	FOG: WD40 repeat [General function prediction only	99.77
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.76
PRK01742	429	tolB translocation protein TolB; Provisional	99.76
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.76
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.74
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.74
KOG4227	609	consensus WD40 repeat protein [General function pr	99.74
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.73
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.72
PRK11028	330	6-phosphogluconolactonase; Provisional	99.71
COG2319	466	FOG: WD40 repeat [General function prediction only	99.7
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.7
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.7
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.69
KOG1963	792	consensus WD40 repeat protein [General function pr	99.69
PRK11028	330	6-phosphogluconolactonase; Provisional	99.69
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.68
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.68
KOG1334	559	consensus WD40 repeat protein [General function pr	99.68
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.67
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.67
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.66
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.65
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.65
PRK04922	433	tolB translocation protein TolB; Provisional	99.65
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.63
PRK03629	429	tolB translocation protein TolB; Provisional	99.63
KOG4227	609	consensus WD40 repeat protein [General function pr	99.62
PRK05137	435	tolB translocation protein TolB; Provisional	99.62
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.62
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.62
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.6
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.6
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.6
PRK02889	427	tolB translocation protein TolB; Provisional	99.6
KOG0649	325	consensus WD40 repeat protein [General function pr	99.6
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.59
PRK01742	429	tolB translocation protein TolB; Provisional	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.56
KOG2139	445	consensus WD40 repeat protein [General function pr	99.55
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.54
KOG1963	792	consensus WD40 repeat protein [General function pr	99.53
KOG2139	445	consensus WD40 repeat protein [General function pr	99.52
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.51
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.5
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.5
KOG2321	703	consensus WD40 repeat protein [General function pr	99.5
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.49
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.49
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.48
PRK03629	429	tolB translocation protein TolB; Provisional	99.48
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.48
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.48
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.46
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.46
KOG2321	703	consensus WD40 repeat protein [General function pr	99.45
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.45
PRK00178	430	tolB translocation protein TolB; Provisional	99.44
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.44
KOG1310	758	consensus WD40 repeat protein [General function pr	99.43
KOG4547	541	consensus WD40 repeat-containing protein [General	99.42
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.41
PRK01029	428	tolB translocation protein TolB; Provisional	99.41
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.4
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.36
PRK05137	435	tolB translocation protein TolB; Provisional	99.35
KOG2315	566	consensus Predicted translation initiation factor	99.35
PRK04922	433	tolB translocation protein TolB; Provisional	99.35
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.35
PRK04792	448	tolB translocation protein TolB; Provisional	99.31
KOG4547	541	consensus WD40 repeat-containing protein [General	99.29
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.29
PRK02889	427	tolB translocation protein TolB; Provisional	99.28
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.25
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.24
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.19
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.17
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.16
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.15
PRK04792	448	tolB translocation protein TolB; Provisional	99.15
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.13
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.12
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.12
PRK00178	430	tolB translocation protein TolB; Provisional	99.12
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.12
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.12
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.1
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.07
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.07
COG4946	668	Uncharacterized protein related to the periplasmic	99.06
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.06
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.04
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.03
KOG2695	425	consensus WD40 repeat protein [General function pr	99.03
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.01
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.01
PRK01029	428	tolB translocation protein TolB; Provisional	99.01
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.98
KOG1334	559	consensus WD40 repeat protein [General function pr	98.98
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.98
KOG2695	425	consensus WD40 repeat protein [General function pr	98.96
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.96
KOG2315	566	consensus Predicted translation initiation factor	98.92
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.9
KOG2314	698	consensus Translation initiation factor 3, subunit	98.89
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.88
PRK04043	419	tolB translocation protein TolB; Provisional	98.88
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.86
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.85
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.82
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.8
KOG2314	698	consensus Translation initiation factor 3, subunit	98.8
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.7
PRK04043	419	tolB translocation protein TolB; Provisional	98.69
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.67
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.65
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.65
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.64
COG4946	668	Uncharacterized protein related to the periplasmic	98.64
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.61
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.6
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.59
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.59
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.58
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.57
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.56
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.55
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.54
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.53
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.53
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.52
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.48
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.42
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.4
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.39
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.35
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.34
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.31
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.31
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.29
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.23
PRK02888	635	nitrous-oxide reductase; Validated	98.18
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.18
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.17
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.16
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.14
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.13
KOG3621	726	consensus WD40 repeat-containing protein [General	98.11
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.11
PRK02888	635	nitrous-oxide reductase; Validated	98.1
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.07
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.04
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.03
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.02
KOG2444	238	consensus WD40 repeat protein [General function pr	97.96
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.96
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.93
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.91
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.88
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.88
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.87
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.87
KOG3621	726	consensus WD40 repeat-containing protein [General	97.83
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.82
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.81
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.77
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.76
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.76
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.71
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.69
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.63
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.6
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.59
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.57
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.56
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.46
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.45
KOG2395	644	consensus Protein involved in vacuole import and d	97.43
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.4
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.36
COG3391	381	Uncharacterized conserved protein [Function unknow	97.35
PHA02713	557	hypothetical protein; Provisional	97.29
COG3391	381	Uncharacterized conserved protein [Function unknow	97.27
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.26
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.26
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.21
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.17
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.1
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.07
KOG2395	644	consensus Protein involved in vacuole import and d	97.07
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	97.04
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.01
PRK13616	591	lipoprotein LpqB; Provisional	96.96
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.93
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.69
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.67
KOG2444	238	consensus WD40 repeat protein [General function pr	96.66
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.5
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.48
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.43
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.32
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.29
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.26
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.19
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.15
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.14
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.13
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.95
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.92
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.9
PHA03098	534	kelch-like protein; Provisional	95.89
PRK13616	591	lipoprotein LpqB; Provisional	95.87
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.79
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.77
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.72
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.63
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.57
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.52
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.36
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.35
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.29
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.1
PHA02713	557	hypothetical protein; Provisional	95.06
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.05
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.02
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.91
COG5167	776	VID27 Protein involved in vacuole import and degra	94.83
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.71
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.6
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.48
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.44
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.44
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.39
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.23
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.21
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.1
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.06
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.04
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.86
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.7
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.66
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.47
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.43
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.27
PHA02790	480	Kelch-like protein; Provisional	93.21
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.09
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.89
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.83
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	92.57
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.44
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.28
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.21
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	91.47
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.12
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.02
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	90.81
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.7
COG5167	776	VID27 Protein involved in vacuole import and degra	90.34
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.34
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	90.33
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.24
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.19
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	89.9
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	89.73
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	89.51
PHA02790	480	Kelch-like protein; Provisional	89.27
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	89.1
PHA03098	534	kelch-like protein; Provisional	88.71
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.48
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.39
KOG2377	657	consensus Uncharacterized conserved protein [Funct	88.19
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.68
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	87.52
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.08
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	87.02
PRK13684	334	Ycf48-like protein; Provisional	86.83
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	86.8
COG4590	733	ABC-type uncharacterized transport system, permeas	86.78
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	85.9
KOG2247	615	consensus WD40 repeat-containing protein [General	84.37
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	83.45
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	83.36
KOG2109	788	consensus WD40 repeat protein [General function pr	82.43
KOG3616	1636	consensus Selective LIM binding factor [Transcript	81.24
PF13449	326	Phytase-like: Esterase-like activity of phytase	81.2
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	80.86
COG5276	370	Uncharacterized conserved protein [Function unknow	80.37

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.4e-41  Score=239.12  Aligned_cols=219  Identities=20%  Similarity=0.255  Sum_probs=175.6

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      |+|+||+.+..++.+.+ +|...|.|++|+|||+ .|++|+.||+|++||.++|+++..--.+            |...|
T Consensus       138 TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg~~~g~~l~g------------H~K~I  203 (480)
T KOG0271|consen  138 TVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTGQQIGRALRG------------HKKWI  203 (480)
T ss_pred             eEEeeccCCCCcceeec-CCccEEEEEEECCCcc-hhhccccCCeEEEecCCCCCcccccccC------------cccce
Confidence            79999999999999999 9999999999999999 8999999999999999998876544334            67778


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe-----------------------------------------
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-----------------------------------------  119 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-----------------------------------------  119 (250)
                      ++++|.|.... +..++|++++.||.++|||+..+.++.                                         
T Consensus       204 t~Lawep~hl~-p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r  282 (480)
T KOG0271|consen  204 TALAWEPLHLV-PPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCR  282 (480)
T ss_pred             eEEeecccccC-CCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHH
Confidence            88888775332 233455555555555555554321110                                         


Q ss_pred             ------------------------------------------------------------------------------ec
Q 025649          120 ------------------------------------------------------------------------------RS  121 (250)
Q Consensus       120 ------------------------------------------------------------------------------~~  121 (250)
                                                                                                    ..
T Consensus       283 ~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r  362 (480)
T KOG0271|consen  283 ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR  362 (480)
T ss_pred             hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh
Confidence                                                                                          00


Q ss_pred             cCCCCCCccceeecccceeEEEeeeee----eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEec
Q 025649          122 KSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  197 (250)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~  197 (250)
                      ...+...+..+.|+||+++++ .+++|    .+.....+.+..|+||-+.|+.++|+   .|.++|++||.|.++++||+
T Consensus       363 mtgHq~lVn~V~fSPd~r~IA-SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws---aDsRLlVS~SkDsTLKvw~V  438 (480)
T KOG0271|consen  363 MTGHQALVNHVSFSPDGRYIA-SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS---ADSRLLVSGSKDSTLKVWDV  438 (480)
T ss_pred             hhchhhheeeEEECCCccEEE-EeecccceeeeeCCCcchhhhhhhccceeEEEEec---cCccEEEEcCCCceEEEEEe
Confidence            011224567789999999999 44444    34567778889999999999999999   89999999999999999999


Q ss_pred             CCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          198 SRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      ++.         ++...+.+|...|+++.|+| ||+.+++|+.|..+++|.
T Consensus       439 ~tk---------Kl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  439 RTK---------KLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             eee---------eecccCCCCCceEEEEEecC-CCceeecCCCceEEEeec
Confidence            997         67677889999999999998 999999999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.5e-39  Score=218.68  Aligned_cols=215  Identities=15%  Similarity=0.178  Sum_probs=189.0

Q ss_pred             cEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            2 WQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         2 i~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      |||||+.++.  ++.++. +|+..|+++.|..+|+ .++|||+||+++|||++...+.+.++              ++.+
T Consensus        63 vRlyD~~S~np~Pv~t~e-~h~kNVtaVgF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~--------------~~sp  126 (311)
T KOG0315|consen   63 VRLYDLNSNNPNPVATFE-GHTKNVTAVGFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQ--------------HNSP  126 (311)
T ss_pred             eEEEEccCCCCCceeEEe-ccCCceEEEEEeecCe-EEEecCCCceEEEEeccCcccchhcc--------------CCCC
Confidence            8999999765  578899 9999999999999999 69999999999999999988888877              6789


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee------eeeecc--
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSG--  151 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--  151 (250)
                      |+++..+|      +...|++|.++|.|++||+.+..............+.++...|||.+++.+.      .|+...  
T Consensus       127 Vn~vvlhp------nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~  200 (311)
T KOG0315|consen  127 VNTVVLHP------NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ  200 (311)
T ss_pred             cceEEecC------CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC
Confidence            99999999      9999999999999999999998777777666678999999999999998522      233332  


Q ss_pred             -CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCC
Q 025649          152 -GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT  230 (250)
Q Consensus       152 -~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  230 (250)
                       ...++++.+++.|.+.+..+.+|   |++++|+++|.|.+++||+..+.-        +.-..+.+|...++..+|+. 
T Consensus       201 ~~s~l~P~~k~~ah~~~il~C~lS---Pd~k~lat~ssdktv~iwn~~~~~--------kle~~l~gh~rWvWdc~FS~-  268 (311)
T KOG0315|consen  201 TASELEPVHKFQAHNGHILRCLLS---PDVKYLATCSSDKTVKIWNTDDFF--------KLELVLTGHQRWVWDCAFSA-  268 (311)
T ss_pred             ccccceEhhheecccceEEEEEEC---CCCcEEEeecCCceEEEEecCCce--------eeEEEeecCCceEEeeeecc-
Confidence             34667788999999999999999   899999999999999999998861        33446789999999999996 


Q ss_pred             CCCeEEEeeCCceEEEEeCC
Q 025649          231 ESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       231 ~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ||+||+||+.|+.+++|+++
T Consensus       269 dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  269 DGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             CccEEEecCCCCceeecccc
Confidence            99999999999999999974

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.7e-41  Score=241.12  Aligned_cols=216  Identities=21%  Similarity=0.227  Sum_probs=191.8

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCC-CeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWK-PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +++||+..+...+++|+ ||++.|.++.|+|.. ...|+||+.||++++|++.+..++..+. +            |...
T Consensus       198 ~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~-g------------H~~R  263 (459)
T KOG0272|consen  198 LVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE-G------------HLAR  263 (459)
T ss_pred             ceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh-c------------chhh
Confidence            47899999999999999 999999999999983 3379999999999999999888888887 4            6789


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee---eeeccCeeee
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI---LDQSGGKRLH  156 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  156 (250)
                      |..++|+|      +|++|++++.|.+-++||++++........+ ...+.+++|.|||..+++.|.   ...|+.+...
T Consensus       264 Vs~VafHP------sG~~L~TasfD~tWRlWD~~tk~ElL~QEGH-s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr  336 (459)
T KOG0272|consen  264 VSRVAFHP------SGKFLGTASFDSTWRLWDLETKSELLLQEGH-SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR  336 (459)
T ss_pred             heeeeecC------CCceeeecccccchhhcccccchhhHhhccc-ccccceeEecCCCceeeccCccchhheeecccCc
Confidence            99999999      9999999999999999999998776655554 488999999999999995322   2334566777


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      ++..+.+|..+|.+|+|+   |+|..|||||.|++++|||++..         ..+..+.+|.+-|..+.|.|..|.+|+
T Consensus       337 ~im~L~gH~k~I~~V~fs---PNGy~lATgs~Dnt~kVWDLR~r---------~~ly~ipAH~nlVS~Vk~~p~~g~fL~  404 (459)
T KOG0272|consen  337 CIMFLAGHIKEILSVAFS---PNGYHLATGSSDNTCKVWDLRMR---------SELYTIPAHSNLVSQVKYSPQEGYFLV  404 (459)
T ss_pred             EEEEecccccceeeEeEC---CCceEEeecCCCCcEEEeeeccc---------ccceecccccchhhheEecccCCeEEE
Confidence            888999999999999999   89999999999999999999997         556788899999999999998899999


Q ss_pred             EeeCCceEEEEeC
Q 025649          237 VCDTSKVVKVYSI  249 (250)
Q Consensus       237 s~~~d~~i~vw~~  249 (250)
                      |++.|++++||.-
T Consensus       405 TasyD~t~kiWs~  417 (459)
T KOG0272|consen  405 TASYDNTVKIWST  417 (459)
T ss_pred             EcccCcceeeecC
Confidence            9999999999963

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.7e-40  Score=238.85  Aligned_cols=214  Identities=19%  Similarity=0.214  Sum_probs=192.2

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      |+++|++.+..++..|. +|...|..++|+|+|+ +|+|++.|.+-++||++++..+..-. +            |...|
T Consensus       242 tvklw~~~~e~~l~~l~-gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QE-G------------Hs~~v  306 (459)
T KOG0272|consen  242 TVKLWKLSQETPLQDLE-GHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQE-G------------HSKGV  306 (459)
T ss_pred             ceeeeccCCCcchhhhh-cchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhc-c------------ccccc
Confidence            68999999989999999 9999999999999999 99999999999999999987765544 4            78999


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe---eeeeeccCeeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSGGKRLHL  157 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  157 (250)
                      .+++|.|      +|.++++|+.|..-+|||++++.++..+..+ ...|..++|+|+|-.+++.   +....|+.+.-..
T Consensus       307 ~~iaf~~------DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH-~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~  379 (459)
T KOG0272|consen  307 FSIAFQP------DGSLAATGGLDSLGRVWDLRTGRCIMFLAGH-IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE  379 (459)
T ss_pred             ceeEecC------CCceeeccCccchhheeecccCcEEEEeccc-ccceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence            9999999      9999999999999999999999999988884 5899999999999999962   2233344444445


Q ss_pred             eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE
Q 025649          158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV  237 (250)
Q Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  237 (250)
                      +..+.+|.+-|+.|.|+|  ..|.+|+|++.|++++||..++.         .++..+.+|.+.|.++..++ |++.|+|
T Consensus       380 ly~ipAH~nlVS~Vk~~p--~~g~fL~TasyD~t~kiWs~~~~---------~~~ksLaGHe~kV~s~Dis~-d~~~i~t  447 (459)
T KOG0272|consen  380 LYTIPAHSNLVSQVKYSP--QEGYFLVTASYDNTVKIWSTRTW---------SPLKSLAGHEGKVISLDISP-DSQAIAT  447 (459)
T ss_pred             ceecccccchhhheEecc--cCCeEEEEcccCcceeeecCCCc---------ccchhhcCCccceEEEEecc-CCceEEE
Confidence            789999999999999994  37999999999999999999998         67788999999999999997 9999999


Q ss_pred             eeCCceEEEEe
Q 025649          238 CDTSKVVKVYS  248 (250)
Q Consensus       238 ~~~d~~i~vw~  248 (250)
                      ++.|+++++|.
T Consensus       448 ~s~DRT~KLW~  458 (459)
T KOG0272|consen  448 SSFDRTIKLWR  458 (459)
T ss_pred             eccCceeeecc
Confidence            99999999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.4e-38  Score=241.79  Aligned_cols=201  Identities=19%  Similarity=0.221  Sum_probs=178.2

Q ss_pred             eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649           11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM   90 (250)
Q Consensus        11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   90 (250)
                      ...+++. ||.++|..+.|+|+.+ +|++||.|+++|+|.+.+..++..++ +            |..+|+.+.|+|   
T Consensus       442 ~~~~~L~-GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~s~~V~y~-G------------H~~PVwdV~F~P---  503 (707)
T KOG0263|consen  442 GTSRTLY-GHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTWSCLVIYK-G------------HLAPVWDVQFAP---  503 (707)
T ss_pred             ceeEEee-cCCCceeeeeeccccc-ceeeccCCcceeeeecccceeEEEec-C------------CCcceeeEEecC---
Confidence            3445677 9999999999999999 99999999999999999999888887 5            688999999999   


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCeeeeeeccccCc
Q 025649           91 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKRLHLDYSVGGH  164 (250)
Q Consensus        91 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~h  164 (250)
                         .|.++|+++.|++.++|..........+..+ -..+.|+.|+|+..++++      +..||.   .+...++.|.||
T Consensus       504 ---~GyYFatas~D~tArLWs~d~~~PlRifagh-lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv---~~G~~VRiF~GH  576 (707)
T KOG0263|consen  504 ---RGYYFATASHDQTARLWSTDHNKPLRIFAGH-LSDVDCVSFHPNSNYVATGSSDRTVRLWDV---STGNSVRIFTGH  576 (707)
T ss_pred             ---CceEEEecCCCceeeeeecccCCchhhhccc-ccccceEEECCcccccccCCCCceEEEEEc---CCCcEEEEecCC
Confidence               8999999999999999999886655544444 588999999999999994      333444   444557789999


Q ss_pred             cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649          165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV  244 (250)
Q Consensus       165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  244 (250)
                      .++|.+++||   |+|++|++|+.||.|++||+.++         .++..+.+|++.|.++.|+. ||..|++|+.|.+|
T Consensus       577 ~~~V~al~~S---p~Gr~LaSg~ed~~I~iWDl~~~---------~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV  643 (707)
T KOG0263|consen  577 KGPVTALAFS---PCGRYLASGDEDGLIKIWDLANG---------SLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSV  643 (707)
T ss_pred             CCceEEEEEc---CCCceEeecccCCcEEEEEcCCC---------cchhhhhcccCceeEEEEec-CCCEEEecCCCCeE
Confidence            9999999999   89999999999999999999998         77788999999999999996 99999999999999


Q ss_pred             EEEeC
Q 025649          245 KVYSI  249 (250)
Q Consensus       245 ~vw~~  249 (250)
                      ++||+
T Consensus       644 ~lWD~  648 (707)
T KOG0263|consen  644 RLWDL  648 (707)
T ss_pred             EEEEc
Confidence            99997

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-37  Score=221.17  Aligned_cols=213  Identities=20%  Similarity=0.270  Sum_probs=178.5

Q ss_pred             eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649           12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML   91 (250)
Q Consensus        12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   91 (250)
                      +...+. ||.++|.|++|+|+|+ .|++|+.|.++|+||+.+..+..+.+ +            |..+|.+++|+|    
T Consensus       107 CssS~~-GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t~K-g------------H~~WVlcvawsP----  167 (480)
T KOG0271|consen  107 CSSSIA-GHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFTCK-G------------HKNWVLCVAWSP----  167 (480)
T ss_pred             eccccC-CCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCcceeec-C------------CccEEEEEEECC----
Confidence            445677 9999999999999999 89999999999999999998888887 4            689999999999    


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc-----cceeEEE---eeeeeeccCeeeeeeccccC
Q 025649           92 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK-----VNIRDAE---MEILDQSGGKRLHLDYSVGG  163 (250)
Q Consensus        92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~  163 (250)
                        |++.||+|+.||+|++||..+++........+...|.+++|.|     ..+++++   .+...+++.....++..+.+
T Consensus       168 --Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg  245 (480)
T KOG0271|consen  168 --DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG  245 (480)
T ss_pred             --CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc
Confidence              9999999999999999999999998887777789999999865     5667774   23344455566667889999


Q ss_pred             ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee---------------------------------------
Q 025649          164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ---------------------------------------  204 (250)
Q Consensus       164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---------------------------------------  204 (250)
                      |..+|+|+.|-    ...++++||.|++|++|+...+....                                       
T Consensus       246 HT~~VTCvrwG----G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~  321 (480)
T KOG0271|consen  246 HTASVTCVRWG----GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ  321 (480)
T ss_pred             CccceEEEEEc----CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence            99999999996    45699999999999999987653221                                       


Q ss_pred             -------------------------------cccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          205 -------------------------------TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       205 -------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                                                     .....+++..+.+|...|+.+.|+| |+++++++|.|..|++|+.+
T Consensus       322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~  397 (480)
T KOG0271|consen  322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGR  397 (480)
T ss_pred             HHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCC
Confidence                                           0011233446778999999999998 99999999999999999853

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-35  Score=201.51  Aligned_cols=213  Identities=19%  Similarity=0.257  Sum_probs=179.9

Q ss_pred             CcEEEEcc-----cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649            1 MWQIIDIR-----QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         1 ti~iwd~~-----~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      ++.+|++.     .|..++.|+ ||...|..+..+++|+ +.++++.|+++++||+.+++..+.|. +            
T Consensus        39 ~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~~t~~f~-G------------  103 (315)
T KOG0279|consen   39 TIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGN-FALSASWDGTLRLWDLATGESTRRFV-G------------  103 (315)
T ss_pred             EEEEEEeccCccccCceeeeee-ccceEecceEEccCCc-eEEeccccceEEEEEecCCcEEEEEE-e------------
Confidence            46788775     567889999 9999999999999999 89999999999999999998888776 4            


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeeccc--ceeEEEeeeeee----
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV--NIRDAEMEILDQ----  149 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----  149 (250)
                      |...|.+++|+|      +++.+++|+.|++|++|+...+.........+...+.|+.|+|+  ..+++ .+.+|.    
T Consensus       104 H~~dVlsva~s~------dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv-s~s~DktvKv  176 (315)
T KOG0279|consen  104 HTKDVLSVAFST------DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV-SASWDKTVKV  176 (315)
T ss_pred             cCCceEEEEecC------CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE-EccCCceEEE
Confidence            688999999999      99999999999999999998766555544444789999999998  55555 555554    


Q ss_pred             ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649          150 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       150 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                      ++....+....+.+|.+.++.+++|   |||..+++|+.||.+.+||++.++         . ....+|...|.+++|+|
T Consensus       177 Wnl~~~~l~~~~~gh~~~v~t~~vS---pDGslcasGgkdg~~~LwdL~~~k---------~-lysl~a~~~v~sl~fsp  243 (315)
T KOG0279|consen  177 WNLRNCQLRTTFIGHSGYVNTVTVS---PDGSLCASGGKDGEAMLWDLNEGK---------N-LYSLEAFDIVNSLCFSP  243 (315)
T ss_pred             EccCCcchhhccccccccEEEEEEC---CCCCEEecCCCCceEEEEEccCCc---------e-eEeccCCCeEeeEEecC
Confidence            4556777788999999999999999   999999999999999999999974         2 35578889999999998


Q ss_pred             CCCCeEEEeeCCceEEEEeCC
Q 025649          230 TESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       230 ~~~~~l~s~~~d~~i~vw~~~  250 (250)
                       +. +.+.+..+..|+|||+.
T Consensus       244 -nr-ywL~~at~~sIkIwdl~  262 (315)
T KOG0279|consen  244 -NR-YWLCAATATSIKIWDLE  262 (315)
T ss_pred             -Cc-eeEeeccCCceEEEecc
Confidence             43 55555556679999974

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-36  Score=213.81  Aligned_cols=217  Identities=18%  Similarity=0.214  Sum_probs=190.2

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      ||++||..++++...|+ ||++.|.+|+|+..|+ +|++++.|-.+++||..+ .++++.+. +            |...
T Consensus       131 tikv~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk-~l~tcSsDl~~~LWd~~~~~~c~ks~~-g------------h~h~  195 (406)
T KOG0295|consen  131 TIKVFDTETGELERSLR-GHTDSVFDISFDASGK-YLATCSSDLSAKLWDFDTFFRCIKSLI-G------------HEHG  195 (406)
T ss_pred             eEEEEEccchhhhhhhh-ccccceeEEEEecCcc-EEEecCCccchhheeHHHHHHHHHHhc-C------------cccc
Confidence            68999999999999999 9999999999999999 999999999999999976 34444444 3            5778


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeee
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRL  155 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  155 (250)
                      |.++.|-|      .|.++++++.|.+|+.|++.++.++..+..+. ..+..+..+.||..+++ +..+    .|.....
T Consensus       196 vS~V~f~P------~gd~ilS~srD~tik~We~~tg~cv~t~~~h~-ewvr~v~v~~DGti~As-~s~dqtl~vW~~~t~  267 (406)
T KOG0295|consen  196 VSSVFFLP------LGDHILSCSRDNTIKAWECDTGYCVKTFPGHS-EWVRMVRVNQDGTIIAS-CSNDQTLRVWVVATK  267 (406)
T ss_pred             eeeEEEEe------cCCeeeecccccceeEEecccceeEEeccCch-HhEEEEEecCCeeEEEe-cCCCceEEEEEeccc
Confidence            99999999      89999999999999999999999999988875 58899999999999994 4333    3345666


Q ss_pred             eeeccccCccccEEEEEeecCC---------C---CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee
Q 025649          156 HLDYSVGGHTAAASCVAFSMFG---------E---RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN  223 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~---------~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (250)
                      ++...+..|+-+|.|++|.|..         +   .++++.+++.|++|++||+.++         .++..+.+|.+.|.
T Consensus       268 ~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---------~cL~tL~ghdnwVr  338 (406)
T KOG0295|consen  268 QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---------MCLFTLVGHDNWVR  338 (406)
T ss_pred             hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---------eEEEEEecccceee
Confidence            6778899999999999998721         1   2369999999999999999998         78889999999999


Q ss_pred             EEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          224 WLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       224 ~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .++|+| .|+||+++.+|+++++||++
T Consensus       339 ~~af~p-~Gkyi~ScaDDktlrvwdl~  364 (406)
T KOG0295|consen  339 GVAFSP-GGKYILSCADDKTLRVWDLK  364 (406)
T ss_pred             eeEEcC-CCeEEEEEecCCcEEEEEec
Confidence            999998 89999999999999999974

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-34  Score=199.16  Aligned_cols=224  Identities=17%  Similarity=0.167  Sum_probs=170.3

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      |+++||+++++..+.|. ||...|.+++|++|.+ .++|||.|.+|++|++. +.+..++..+           .+.+.|
T Consensus        86 ~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~-g~ck~t~~~~-----------~~~~WV  151 (315)
T KOG0279|consen   86 TLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTL-GVCKYTIHED-----------SHREWV  151 (315)
T ss_pred             eEEEEEecCCcEEEEEE-ecCCceEEEEecCCCc-eeecCCCcceeeeeeec-ccEEEEEecC-----------CCcCcE
Confidence            58999999999999999 9999999999999999 89999999999999996 5555555433           026899


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLH  156 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  156 (250)
                      .++.|+|    ..+.-+|++++.|++|++||+++-+.......+ ...+..+++||||...++ |..+    .++....+
T Consensus       152 scvrfsP----~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh-~~~v~t~~vSpDGslcas-Ggkdg~~~LwdL~~~k  225 (315)
T KOG0279|consen  152 SCVRFSP----NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH-SGYVNTVTVSPDGSLCAS-GGKDGEAMLWDLNEGK  225 (315)
T ss_pred             EEEEEcC----CCCCcEEEEccCCceEEEEccCCcchhhccccc-cccEEEEEECCCCCEEec-CCCCceEEEEEccCCc
Confidence            9999999    223789999999999999999987766655554 588999999999999985 3222    23344444


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      .+..+ +|...|.+++|+   |+. +.+++..+..|+|||+.++..+........-.....-.....+++|++ ||+.|+
T Consensus       226 ~lysl-~a~~~v~sl~fs---pnr-ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~tLf  299 (315)
T KOG0279|consen  226 NLYSL-EAFDIVNSLCFS---PNR-YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQTLF  299 (315)
T ss_pred             eeEec-cCCCeEeeEEec---CCc-eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcEEE
Confidence            45555 467889999999   764 444445566799999999866532111111001112233467789997 999999


Q ss_pred             EeeCCceEEEEeCC
Q 025649          237 VCDTSKVVKVYSIS  250 (250)
Q Consensus       237 s~~~d~~i~vw~~~  250 (250)
                      +|-.|+.|++|.+.
T Consensus       300 ~g~td~~irv~qv~  313 (315)
T KOG0279|consen  300 AGYTDNVIRVWQVA  313 (315)
T ss_pred             eeecCCcEEEEEee
Confidence            99999999999863

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.9e-34  Score=198.95  Aligned_cols=207  Identities=15%  Similarity=0.192  Sum_probs=177.7

Q ss_pred             eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649           11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM   90 (250)
Q Consensus        11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   90 (250)
                      +..++|+ ||.+.|.++.|++|++ +|+++|.||.+.|||.-+...++.++.+             ..+|...+|+|   
T Consensus        46 ~~rr~Lk-GH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~haipl~-------------s~WVMtCA~sP---  107 (343)
T KOG0286|consen   46 RTRRTLK-GHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHAIPLP-------------SSWVMTCAYSP---  107 (343)
T ss_pred             eeEEEec-ccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeEEecC-------------ceeEEEEEECC---
Confidence            3447899 9999999999999999 8999999999999999888777777755             68999999999   


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCc--e---eEeeccCCCCCCccceeecccceeEEEee--eeeeccCeeeeeeccccC
Q 025649           91 LDKTNKICVVAKGDGVVDVINIESE--L---NISRSKSTTKPLKGSQSTSKVNIRDAEME--ILDQSGGKRLHLDYSVGG  163 (250)
Q Consensus        91 ~~~~~~~l~~~~~d~~i~~~d~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  163 (250)
                         .++.+|.|+-|+...||++.+.  +   ...+....+...+.+..|-+|+..+-..|  ..-.|+.+..+.+..|.+
T Consensus       108 ---Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G  184 (343)
T KOG0286|consen  108 ---SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG  184 (343)
T ss_pred             ---CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC
Confidence               9999999999999999999854  2   22333344558899999999887776432  334455666677789999


Q ss_pred             ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCce
Q 025649          164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV  243 (250)
Q Consensus       164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  243 (250)
                      |.+.|.++.++|  .+++.+++|+-|+..++||++.+         ...+.+.+|+..|+++.|+| +|.-|++|+.|++
T Consensus       185 H~gDV~slsl~p--~~~ntFvSg~cD~~aklWD~R~~---------~c~qtF~ghesDINsv~ffP-~G~afatGSDD~t  252 (343)
T KOG0286|consen  185 HTGDVMSLSLSP--SDGNTFVSGGCDKSAKLWDVRSG---------QCVQTFEGHESDINSVRFFP-SGDAFATGSDDAT  252 (343)
T ss_pred             CcccEEEEecCC--CCCCeEEecccccceeeeeccCc---------ceeEeecccccccceEEEcc-CCCeeeecCCCce
Confidence            999999999994  38999999999999999999998         66778999999999999998 8999999999999


Q ss_pred             EEEEeCC
Q 025649          244 VKVYSIS  250 (250)
Q Consensus       244 i~vw~~~  250 (250)
                      .++||++
T Consensus       253 cRlyDlR  259 (343)
T KOG0286|consen  253 CRLYDLR  259 (343)
T ss_pred             eEEEeec
Confidence            9999986

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1e-33  Score=218.40  Aligned_cols=214  Identities=18%  Similarity=0.221  Sum_probs=190.3

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      +-||++.+...+.+.+ +|...+++++++|||+ +++||+.||.|+|||..++-|..+|..             |...|+
T Consensus       332 LlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFte-------------Hts~Vt  396 (893)
T KOG0291|consen  332 LLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTE-------------HTSGVT  396 (893)
T ss_pred             EEEEEeeccceeeecc-ccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEecc-------------CCCceE
Confidence            4689998888888888 9999999999999999 999999999999999999999999983             588999


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee-----eccCeeee
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-----QSGGKRLH  156 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  156 (250)
                      .+.|+.      .++.+++++-||+|+.||+...+.-..+..+......+++..|.|..+. +|..|     .|..++.+
T Consensus       397 ~v~f~~------~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~-AG~~d~F~IfvWS~qTGq  469 (893)
T KOG0291|consen  397 AVQFTA------RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVC-AGAQDSFEIFVWSVQTGQ  469 (893)
T ss_pred             EEEEEe------cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEE-eeccceEEEEEEEeecCe
Confidence            999998      9999999999999999999999988888888888899999999999988 44433     34567888


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      .+..+.||+++|.+++|+   |.+..|+++|.|++|++||+-..         ........+...+..+.|.| +|+.++
T Consensus       470 llDiLsGHEgPVs~l~f~---~~~~~LaS~SWDkTVRiW~if~s---------~~~vEtl~i~sdvl~vsfrP-dG~ela  536 (893)
T KOG0291|consen  470 LLDILSGHEGPVSGLSFS---PDGSLLASGSWDKTVRIWDIFSS---------SGTVETLEIRSDVLAVSFRP-DGKELA  536 (893)
T ss_pred             eeehhcCCCCcceeeEEc---cccCeEEeccccceEEEEEeecc---------CceeeeEeeccceeEEEEcC-CCCeEE
Confidence            889999999999999999   89999999999999999999875         22234456778899999998 999999


Q ss_pred             EeeCCceEEEEeCC
Q 025649          237 VCDTSKVVKVYSIS  250 (250)
Q Consensus       237 s~~~d~~i~vw~~~  250 (250)
                      ++..||.|.+||..
T Consensus       537 VaTldgqItf~d~~  550 (893)
T KOG0291|consen  537 VATLDGQITFFDIK  550 (893)
T ss_pred             EEEecceEEEEEhh
Confidence            99999999999963

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4.4e-35  Score=208.01  Aligned_cols=206  Identities=17%  Similarity=0.260  Sum_probs=172.6

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      ||+|||..+.++++.|. ||++.|.|+.|...   .|++||.|.+|++||.++++++.++- +            |.+.|
T Consensus       218 TikiWD~n~~~c~~~L~-GHtGSVLCLqyd~r---viisGSSDsTvrvWDv~tge~l~tli-h------------HceaV  280 (499)
T KOG0281|consen  218 TIKIWDKNSLECLKILT-GHTGSVLCLQYDER---VIVSGSSDSTVRVWDVNTGEPLNTLI-H------------HCEAV  280 (499)
T ss_pred             ceEEeccccHHHHHhhh-cCCCcEEeeeccce---EEEecCCCceEEEEeccCCchhhHHh-h------------hccee
Confidence            79999999999999999 99999999998765   89999999999999999999998886 4            68899


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE--eeccCCCCCCccceeecccceeEEEe---eeeeeccCeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI--SRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSGGKRL  155 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  155 (250)
                      ..+.|+        +.++++++.|.++.+||+.+...+  ......+...+..+.|+..  ++++.   .....+...+.
T Consensus       281 Lhlrf~--------ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~st~  350 (499)
T KOG0281|consen  281 LHLRFS--------NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWSTSTC  350 (499)
T ss_pred             EEEEEe--------CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc--eEEEecCCceEEEEeccce
Confidence            999987        578999999999999999875422  2223334466777777654  66632   22344456677


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                      +.++++.+|+..|.|+.|.     |+++++||.|.+|++||+..|         .++..+.+|+.-|.++.|   |.+.+
T Consensus       351 efvRtl~gHkRGIAClQYr-----~rlvVSGSSDntIRlwdi~~G---------~cLRvLeGHEeLvRciRF---d~krI  413 (499)
T KOG0281|consen  351 EFVRTLNGHKRGIACLQYR-----DRLVVSGSSDNTIRLWDIECG---------ACLRVLEGHEELVRCIRF---DNKRI  413 (499)
T ss_pred             eeehhhhcccccceehhcc-----CeEEEecCCCceEEEEecccc---------HHHHHHhchHHhhhheee---cCcee
Confidence            8889999999999999874     799999999999999999999         677888999999999999   44579


Q ss_pred             EEeeCCceEEEEeCC
Q 025649          236 VVCDTSKVVKVYSIS  250 (250)
Q Consensus       236 ~s~~~d~~i~vw~~~  250 (250)
                      ++|+.||+|++||+.
T Consensus       414 VSGaYDGkikvWdl~  428 (499)
T KOG0281|consen  414 VSGAYDGKIKVWDLQ  428 (499)
T ss_pred             eeccccceEEEEecc
Confidence            999999999999973

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.5e-33  Score=207.25  Aligned_cols=215  Identities=18%  Similarity=0.246  Sum_probs=183.9

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||++||+++.++.  -...++|+.|+|++.+.+++|+.|+.|+.||+++++.++.+..             |-..|
T Consensus       281 ~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~-------------hLg~i  345 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR-------------HLGAI  345 (503)
T ss_pred             eeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh-------------hhhhe
Confidence            48999999999999998  5667899999999966999999999999999999998888763             46789


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKR  154 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  154 (250)
                      ..+.|-+      +++++++.+.|+.+++|+.+.+..+..+.........++..+|++..++.      +.++.....-.
T Consensus       346 ~~i~F~~------~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r  419 (503)
T KOG0282|consen  346 LDITFVD------EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR  419 (503)
T ss_pred             eeeEEcc------CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence            9999998      99999999999999999999988777777776778899999999999883      22222222333


Q ss_pred             eeeeccccCccc--cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649          155 LHLDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES  232 (250)
Q Consensus       155 ~~~~~~~~~h~~--~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (250)
                      ......+++|..  .-..+.||   |+|.+|++|+.||.+.+||.++.         .++..+..|.+++..+.|+|...
T Consensus       420 ~nkkK~feGh~vaGys~~v~fS---pDG~~l~SGdsdG~v~~wdwkt~---------kl~~~lkah~~~ci~v~wHP~e~  487 (503)
T KOG0282|consen  420 LNKKKRFEGHSVAGYSCQVDFS---PDGRTLCSGDSDGKVNFWDWKTT---------KLVSKLKAHDQPCIGVDWHPVEP  487 (503)
T ss_pred             cCHhhhhcceeccCceeeEEEc---CCCCeEEeecCCccEEEeechhh---------hhhhccccCCcceEEEEecCCCc
Confidence            344567788854  34567888   99999999999999999999997         77788899999999999999888


Q ss_pred             CeEEEeeCCceEEEEe
Q 025649          233 ENLVVCDTSKVVKVYS  248 (250)
Q Consensus       233 ~~l~s~~~d~~i~vw~  248 (250)
                      ..+|+|+.||.|++|+
T Consensus       488 Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  488 SKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceeEecccCceeEecC
Confidence            8899999999999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1e-31  Score=182.60  Aligned_cols=219  Identities=12%  Similarity=0.146  Sum_probs=175.3

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC--ccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |||+|...+|++.++++ -..+.|+.+...|+++ .|++++. ..||+||++++.+  +.++. +            |.+
T Consensus        21 TIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~-~LAaa~~-qhvRlyD~~S~np~Pv~t~e-~------------h~k   84 (311)
T KOG0315|consen   21 TIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKK-DLAAAGN-QHVRLYDLNSNNPNPVATFE-G------------HTK   84 (311)
T ss_pred             eeeeeehhcCeEEEEEe-cCccceeeEEEcCCcc-hhhhccC-CeeEEEEccCCCCCceeEEe-c------------cCC
Confidence            79999999999999999 6678999999999998 7777765 5899999998765  45554 2            578


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeeccCeee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRL  155 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  155 (250)
                      .|.++.|..      +|+.+++|++||+++|||++.......+...  ..+.++..+|+...|++   .|....++....
T Consensus        85 NVtaVgF~~------dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvlhpnQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen   85 NVTAVGFQC------DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             ceEEEEEee------cCeEEEecCCCceEEEEeccCcccchhccCC--CCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence            999999998      9999999999999999999995555555444  89999999999888874   222222222222


Q ss_pred             eeeccc-cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649          156 HLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       156 ~~~~~~-~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  234 (250)
                      .+...+ ......|.+++..   |+|.+++.+...|..++|++-+.+....   -+++..+..|+.-+..+.++| |+++
T Consensus       157 ~c~~~liPe~~~~i~sl~v~---~dgsml~a~nnkG~cyvW~l~~~~~~s~---l~P~~k~~ah~~~il~C~lSP-d~k~  229 (311)
T KOG0315|consen  157 SCTHELIPEDDTSIQSLTVM---PDGSMLAAANNKGNCYVWRLLNHQTASE---LEPVHKFQAHNGHILRCLLSP-DVKY  229 (311)
T ss_pred             ccccccCCCCCcceeeEEEc---CCCcEEEEecCCccEEEEEccCCCcccc---ceEhhheecccceEEEEEECC-CCcE
Confidence            222222 2334679999999   8999999999999999999988544322   256677899999999999998 9999


Q ss_pred             EEEeeCCceEEEEeCC
Q 025649          235 LVVCDTSKVVKVYSIS  250 (250)
Q Consensus       235 l~s~~~d~~i~vw~~~  250 (250)
                      |+++|.|.+++||+.+
T Consensus       230 lat~ssdktv~iwn~~  245 (311)
T KOG0315|consen  230 LATCSSDKTVKIWNTD  245 (311)
T ss_pred             EEeecCCceEEEEecC
Confidence            9999999999999863

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.6e-31  Score=184.37  Aligned_cols=210  Identities=17%  Similarity=0.287  Sum_probs=178.1

Q ss_pred             EEEEcccc------eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            3 QIIDIRQH------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         3 ~iwd~~~~------~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      .||++.+.      +..+.+. +|++-+.|+.|.+|+  .|+|+|.|.+..+||+++++.+..|. +            |
T Consensus       122 siy~ls~~d~~g~~~v~r~l~-gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~-G------------H  185 (343)
T KOG0286|consen  122 SIYPLSTRDAEGNVRVSRELA-GHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFH-G------------H  185 (343)
T ss_pred             EEEecccccccccceeeeeec-CccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEec-C------------C
Confidence            57887754      4556788 999999999999977  59999999999999999999998887 4            6


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeec
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQS  150 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  150 (250)
                      ...|.+++++|     .+++.+++|+-|+..++||++.+...+.+..++ ..|..+.|.|+|.-+++      ...+|.+
T Consensus       186 ~gDV~slsl~p-----~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe-sDINsv~ffP~G~afatGSDD~tcRlyDlR  259 (343)
T KOG0286|consen  186 TGDVMSLSLSP-----SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE-SDINSVRFFPSGDAFATGSDDATCRLYDLR  259 (343)
T ss_pred             cccEEEEecCC-----CCCCeEEecccccceeeeeccCcceeEeecccc-cccceEEEccCCCeeeecCCCceeEEEeec
Confidence            88999999998     489999999999999999999998888888774 89999999999999984      2233333


Q ss_pred             cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCC
Q 025649          151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT  230 (250)
Q Consensus       151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  230 (250)
                      ...+... ..-..-..+|++++||   ..|++|++|..|.++.+||.-.+         +....+.+|++.|.++..+| 
T Consensus       260 aD~~~a~-ys~~~~~~gitSv~FS---~SGRlLfagy~d~~c~vWDtlk~---------e~vg~L~GHeNRvScl~~s~-  325 (343)
T KOG0286|consen  260 ADQELAV-YSHDSIICGITSVAFS---KSGRLLFAGYDDFTCNVWDTLKG---------ERVGVLAGHENRVSCLGVSP-  325 (343)
T ss_pred             CCcEEee-eccCcccCCceeEEEc---ccccEEEeeecCCceeEeecccc---------ceEEEeeccCCeeEEEEECC-
Confidence            3332221 1222345689999999   89999999999999999999887         67778889999999999998 


Q ss_pred             CCCeEEEeeCCceEEEEe
Q 025649          231 ESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       231 ~~~~l~s~~~d~~i~vw~  248 (250)
                      ||.-++|||.|..++||.
T Consensus       326 DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  326 DGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCcEEEecchhHheeecC
Confidence            999999999999999994

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.1e-33  Score=201.79  Aligned_cols=214  Identities=14%  Similarity=0.156  Sum_probs=180.5

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      +.||+..+......++ +|.++|.++.|++++. .++||+.+|.|++|+.. ...++.++.+            |...|.
T Consensus       120 FtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpn-mnnVk~~~ah------------h~eaIR  184 (464)
T KOG0284|consen  120 FTLWNGTSFNFETILQ-AHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPN-MNNVKIIQAH------------HAEAIR  184 (464)
T ss_pred             EEEecCceeeHHHHhh-hhcccceeEEEccCCC-EEEEcCCCceEEecccc-hhhhHHhhHh------------hhhhhh
Confidence            3567654433334455 9999999999999999 79999999999999985 4445555544            568999


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeee
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLD  158 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  158 (250)
                      +++|+|      +...+++++.||+|+|||....+....+. .+.-.+.+++|+|.-.++++.+   ....++.+...++
T Consensus       185 dlafSp------nDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl  257 (464)
T KOG0284|consen  185 DLAFSP------NDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL  257 (464)
T ss_pred             eeccCC------CCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence            999999      89999999999999999999876655553 3457899999999999998422   3344567788899


Q ss_pred             ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649          159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC  238 (250)
Q Consensus       159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  238 (250)
                      .++.+|+..|..+.|+   +++++|+|+|.|..++++|+++.         +.+..+.+|...|+++.|+|-...+|.+|
T Consensus       258 ~tlh~HKntVl~~~f~---~n~N~Llt~skD~~~kv~DiR~m---------kEl~~~r~Hkkdv~~~~WhP~~~~lftsg  325 (464)
T KOG0284|consen  258 ATLHGHKNTVLAVKFN---PNGNWLLTGSKDQSCKVFDIRTM---------KELFTYRGHKKDVTSLTWHPLNESLFTSG  325 (464)
T ss_pred             hhhhhccceEEEEEEc---CCCCeeEEccCCceEEEEehhHh---------HHHHHhhcchhhheeeccccccccceeec
Confidence            9999999999999999   89999999999999999999976         55578899999999999999888899999


Q ss_pred             eCCceEEEEeC
Q 025649          239 DTSKVVKVYSI  249 (250)
Q Consensus       239 ~~d~~i~vw~~  249 (250)
                      +.||.|..|.+
T Consensus       326 g~Dgsvvh~~v  336 (464)
T KOG0284|consen  326 GSDGSVVHWVV  336 (464)
T ss_pred             cCCCceEEEec
Confidence            99999999975

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.8e-32  Score=211.32  Aligned_cols=215  Identities=21%  Similarity=0.272  Sum_probs=179.8

Q ss_pred             CcEEEEc-ccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDI-RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~-~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      ||+|||+ ..+..+++++ +|...|++++|+|+++ ++++|+.|++|++||+++++++..+..             |...
T Consensus       226 tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~~-------------hs~~  290 (456)
T KOG0266|consen  226 TLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKLKG-------------HSDG  290 (456)
T ss_pred             eEEEeeccCCCeEEEEec-CCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEeeec-------------cCCc
Confidence            6899999 5668999999 9999999999999997 999999999999999999999999884             4789


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce--eEeeccCCCCC-CccceeecccceeEEEe---eeeeeccCe
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL--NISRSKSTTKP-LKGSQSTSKVNIRDAEM---EILDQSGGK  153 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~  153 (250)
                      |.+++|++      ++++|++++.|+.|++||+.++.  ........... .+.++.|+|++.+++..   +....++..
T Consensus       291 is~~~f~~------d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~  364 (456)
T KOG0266|consen  291 ISGLAFSP------DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR  364 (456)
T ss_pred             eEEEEECC------CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence            99999999      99999999999999999999998  44555555444 78999999999999942   123334445


Q ss_pred             eeeeeccccCccccEEEE---EeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-CCceeEEEecC
Q 025649          154 RLHLDYSVGGHTAAASCV---AFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTP  229 (250)
Q Consensus       154 ~~~~~~~~~~h~~~v~~~---~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~  229 (250)
                      .......+.+|...+.|+   ..+   +.+.++++|+.|+.|++||+.++         ..+..+.+| ...+..+.++|
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~sg~~d~~v~~~~~~s~---------~~~~~l~~h~~~~~~~~~~~~  432 (456)
T KOG0266|consen  365 SGKSVGTYTGHSNLVRCIFSPTLS---TGGKLIYSGSEDGSVYVWDSSSG---------GILQRLEGHSKAAVSDLSSHP  432 (456)
T ss_pred             CCcceeeecccCCcceeEeccccc---CCCCeEEEEeCCceEEEEeCCcc---------chhhhhcCCCCCceeccccCC
Confidence            555666777777754333   334   78999999999999999999997         666778889 88889999998


Q ss_pred             CCCCeEEEee--CCceEEEEeC
Q 025649          230 TESENLVVCD--TSKVVKVYSI  249 (250)
Q Consensus       230 ~~~~~l~s~~--~d~~i~vw~~  249 (250)
                       ...++++++  .|+.+++|..
T Consensus       433 -~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  433 -TENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             -CcCeeeecCcCCCceEEEecC
Confidence             677888887  7999999975

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.5e-33  Score=202.30  Aligned_cols=214  Identities=14%  Similarity=0.167  Sum_probs=177.4

Q ss_pred             CcEEEEcccceeeeeeccCCC-CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHS-SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +|++|+.. ...++.++ +|. ..|.+++|+|+.. .|++||+||+|+|||....+....+. +            |.-.
T Consensus       161 ~iKyWqpn-mnnVk~~~-ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~-G------------Hgwd  224 (464)
T KOG0284|consen  161 MIKYWQPN-MNNVKIIQ-AHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLR-G------------HGWD  224 (464)
T ss_pred             eEEecccc-hhhhHHhh-HhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheec-c------------CCCC
Confidence            47888874 44455666 555 9999999999888 89999999999999998887766665 3            5678


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeee
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRL  155 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  155 (250)
                      |.+++|+|      ...+|++++.|+.|++||.+++.++..+..+ +..|..+.|+|++++|++ ++.|.    .+.+.+
T Consensus       225 VksvdWHP------~kgLiasgskDnlVKlWDprSg~cl~tlh~H-KntVl~~~f~~n~N~Llt-~skD~~~kv~DiR~m  296 (464)
T KOG0284|consen  225 VKSVDWHP------TKGLIASGSKDNLVKLWDPRSGSCLATLHGH-KNTVLAVKFNPNGNWLLT-GSKDQSCKVFDIRTM  296 (464)
T ss_pred             cceeccCC------ccceeEEccCCceeEeecCCCcchhhhhhhc-cceEEEEEEcCCCCeeEE-ccCCceEEEEehhHh
Confidence            99999999      8899999999999999999999999887766 488999999999999995 22222    233355


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                      +.++.+++|+..|++++|+|.  +..+|.+|+.||.|..|.+....        ++...-.+|...|++++|+| -|.+|
T Consensus       297 kEl~~~r~Hkkdv~~~~WhP~--~~~lftsgg~Dgsvvh~~v~~~~--------p~~~i~~AHd~~iwsl~~hP-lGhil  365 (464)
T KOG0284|consen  297 KELFTYRGHKKDVTSLTWHPL--NESLFTSGGSDGSVVHWVVGLEE--------PLGEIPPAHDGEIWSLAYHP-LGHIL  365 (464)
T ss_pred             HHHHHhhcchhhheeeccccc--cccceeeccCCCceEEEeccccc--------cccCCCcccccceeeeeccc-cceeE
Confidence            667889999999999999973  45789999999999999998432        33334468999999999998 78899


Q ss_pred             EEeeCCceEEEEeC
Q 025649          236 VVCDTSKVVKVYSI  249 (250)
Q Consensus       236 ~s~~~d~~i~vw~~  249 (250)
                      ++|+.|.++++|.-
T Consensus       366 ~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  366 ATGSNDRTVRFWTR  379 (464)
T ss_pred             eecCCCcceeeecc
Confidence            99999999999963

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.2e-32  Score=210.82  Aligned_cols=216  Identities=13%  Similarity=0.152  Sum_probs=177.7

Q ss_pred             eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC--------ccceec----------CCCCCCCCCCcc
Q 025649           13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--------NKIVNF----------GLPENNGNAGQC   74 (250)
Q Consensus        13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~--------~~~~~~----------~~~~~~~~~~~~   74 (250)
                      ..++. .-...++|..|+++++ +||.|-.|..|++|.+...+.        +.....          ...........+
T Consensus       371 ~YT~~-nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~  448 (707)
T KOG0263|consen  371 MYTFH-NTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY  448 (707)
T ss_pred             EEEEE-EcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence            34444 3445789999999999 999999999999999974221        111100          000011123467


Q ss_pred             cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe---eeeeecc
Q 025649           75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSG  151 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  151 (250)
                      .|.++|++..|+|      +.++|+++++|+++|+|.+.+.........+ ..+++.+.|+|-|-++++.   +....|.
T Consensus       449 GH~GPVyg~sFsP------d~rfLlScSED~svRLWsl~t~s~~V~y~GH-~~PVwdV~F~P~GyYFatas~D~tArLWs  521 (707)
T KOG0263|consen  449 GHSGPVYGCSFSP------DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH-LAPVWDVQFAPRGYYFATASHDQTARLWS  521 (707)
T ss_pred             cCCCceeeeeecc------cccceeeccCCcceeeeecccceeEEEecCC-CcceeeEEecCCceEEEecCCCceeeeee
Confidence            8999999999999      9999999999999999999999888887744 5899999999999999963   2233445


Q ss_pred             CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649          152 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE  231 (250)
Q Consensus       152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  231 (250)
                      ....++++.+.+|-+.|.|+.|+   |+..|+++||.|.++++||..++         ..++.+.+|.++|.+++|+| +
T Consensus       522 ~d~~~PlRifaghlsDV~cv~FH---PNs~Y~aTGSsD~tVRlWDv~~G---------~~VRiF~GH~~~V~al~~Sp-~  588 (707)
T KOG0263|consen  522 TDHNKPLRIFAGHLSDVDCVSFH---PNSNYVATGSSDRTVRLWDVSTG---------NSVRIFTGHKGPVTALAFSP-C  588 (707)
T ss_pred             cccCCchhhhcccccccceEEEC---CcccccccCCCCceEEEEEcCCC---------cEEEEecCCCCceEEEEEcC-C
Confidence            55677888999999999999999   89999999999999999999999         66778899999999999998 9


Q ss_pred             CCeEEEeeCCceEEEEeCC
Q 025649          232 SENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       232 ~~~l~s~~~d~~i~vw~~~  250 (250)
                      |++|++|+.||.|++||+.
T Consensus       589 Gr~LaSg~ed~~I~iWDl~  607 (707)
T KOG0263|consen  589 GRYLASGDEDGLIKIWDLA  607 (707)
T ss_pred             CceEeecccCCcEEEEEcC
Confidence            9999999999999999974

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.7e-31  Score=207.96  Aligned_cols=214  Identities=21%  Similarity=0.270  Sum_probs=178.4

Q ss_pred             CcEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEc-cCCCCccceecCCCCCCCCCCcccCC
Q 025649            1 MWQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDF-SKGRPNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         1 ti~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      ++++|+..+++  .+..+. +|...|.+++|+|+++ ++++++.|++|++||+ ..+..+++++ +            |.
T Consensus       182 ~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~-g------------H~  246 (456)
T KOG0266|consen  182 LIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRNLKTLK-G------------HS  246 (456)
T ss_pred             cEEEeecccccchhhcccc-ccccceeeeEECCCCc-EEEEecCCceEEEeeccCCCeEEEEec-C------------CC
Confidence            47899998777  778887 9999999999999999 9999999999999999 4557788887 5            78


Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCe
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGK  153 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  153 (250)
                      ..|++++|+|      +++++++|+.|++|++||+++++....+..+. ..+..++|++++.++++. ..|.    ++..
T Consensus       247 ~~v~~~~f~p------~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs-~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~  318 (456)
T KOG0266|consen  247 TYVTSVAFSP------DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS-DGISGLAFSPDGNLLVSA-SYDGTIRVWDLE  318 (456)
T ss_pred             CceEEEEecC------CCCEEEEecCCCcEEEEeccCCeEEEeeeccC-CceEEEEECCCCCEEEEc-CCCccEEEEECC
Confidence            9999999999      88999999999999999999988888887775 699999999999999953 3233    2333


Q ss_pred             eee--eeccccCcccc--EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee---EEE
Q 025649          154 RLH--LDYSVGGHTAA--ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN---WLC  226 (250)
Q Consensus       154 ~~~--~~~~~~~h~~~--v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~  226 (250)
                      ...  ++..+.++...  ++++.|+   |++.++++++.|+.+++||+..+         .......+|...+.   ...
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~fs---p~~~~ll~~~~d~~~~~w~l~~~---------~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  319 TGSKLCLKLLSGAENSAPVTSVQFS---PNGKYLLSASLDRTLKLWDLRSG---------KSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             CCceeeeecccCCCCCCceeEEEEC---CCCcEEEEecCCCeEEEEEccCC---------cceeeecccCCcceeEeccc
Confidence            333  45566666555  9999999   89999999999999999999998         55667777777532   223


Q ss_pred             ecCCCCCeEEEeeCCceEEEEeCC
Q 025649          227 TTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       227 ~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .+ ..+.++++|+.|+.|++||+.
T Consensus       387 ~~-~~~~~i~sg~~d~~v~~~~~~  409 (456)
T KOG0266|consen  387 LS-TGGKLIYSGSEDGSVYVWDSS  409 (456)
T ss_pred             cc-CCCCeEEEEeCCceEEEEeCC
Confidence            34 388999999999999999974

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=8.4e-31  Score=180.03  Aligned_cols=207  Identities=18%  Similarity=0.164  Sum_probs=171.6

Q ss_pred             eeeeeccCCCCCeeeEEEcCC-CCeEEEEecCCCeEEEEEccCCC---CccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649           12 LYKSLRAGHSSICSSVQFIPW-KPWEVISGGLDSKLVMWDFSKGR---PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD   87 (250)
Q Consensus        12 ~~~~l~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   87 (250)
                      .++.++ +|.+.+..++|+|- |. +|+||+.|..|++|+...+.   +...+..+            |...|.+++|+|
T Consensus         6 ~~~~~~-gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~------------hkrsVRsvAwsp   71 (312)
T KOG0645|consen    6 LEQKLS-GHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDG------------HKRSVRSVAWSP   71 (312)
T ss_pred             eEEeec-CCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEecccc------------chheeeeeeecC
Confidence            457788 99999999999998 77 89999999999999997533   33333323            889999999999


Q ss_pred             CcccCCCCCEEEEEeCCCeEEEEeCCCce--eEeeccCCCCCCccceeecccceeEEEee------eeeeccCeeeeeec
Q 025649           88 ADMLDKTNKICVVAKGDGVVDVINIESEL--NISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSGGKRLHLDY  159 (250)
Q Consensus        88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  159 (250)
                            .|++|++++.|.++.||.-..+.  +...++.+ ...+.+++|+++|.+|++..      .|........++..
T Consensus        72 ------~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~a  144 (312)
T KOG0645|consen   72 ------HGRYLASASFDATVVIWKKEDGEFECVATLEGH-ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIA  144 (312)
T ss_pred             ------CCcEEEEeeccceEEEeecCCCceeEEeeeecc-ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEe
Confidence                  99999999999999999877543  44444444 58999999999999999522      23333456788899


Q ss_pred             cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649          160 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD  239 (250)
Q Consensus       160 ~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  239 (250)
                      .++.|...|..+.|+   |...+|+++|.|.+|++|+-.....-      .+...+.+|+..|++++|.+ .|..|++++
T Consensus       145 VL~~HtqDVK~V~WH---Pt~dlL~S~SYDnTIk~~~~~~dddW------~c~~tl~g~~~TVW~~~F~~-~G~rl~s~s  214 (312)
T KOG0645|consen  145 VLQEHTQDVKHVIWH---PTEDLLFSCSYDNTIKVYRDEDDDDW------ECVQTLDGHENTVWSLAFDN-IGSRLVSCS  214 (312)
T ss_pred             eeccccccccEEEEc---CCcceeEEeccCCeEEEEeecCCCCe------eEEEEecCccceEEEEEecC-CCceEEEec
Confidence            999999999999999   78889999999999999987742211      56778899999999999997 788999999


Q ss_pred             CCceEEEEeC
Q 025649          240 TSKVVKVYSI  249 (250)
Q Consensus       240 ~d~~i~vw~~  249 (250)
                      .|++++||.+
T Consensus       215 dD~tv~Iw~~  224 (312)
T KOG0645|consen  215 DDGTVSIWRL  224 (312)
T ss_pred             CCcceEeeee
Confidence            9999999973

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.8e-32  Score=193.01  Aligned_cols=212  Identities=20%  Similarity=0.221  Sum_probs=181.1

Q ss_pred             cEEEEccc-ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            2 WQIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         2 i~iwd~~~-~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +++||.++ .++++.+. +|...|.+++|-|.|. ++++++.|.+|+.|++.++-++.++..             |+..|
T Consensus       174 ~~LWd~~~~~~c~ks~~-gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~-------------h~ewv  238 (406)
T KOG0295|consen  174 AKLWDFDTFFRCIKSLI-GHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFPG-------------HSEWV  238 (406)
T ss_pred             hhheeHHHHHHHHHHhc-CcccceeeEEEEecCC-eeeecccccceeEEecccceeEEeccC-------------chHhE
Confidence            68999986 67778888 9999999999999998 899999999999999999999999983             57899


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccc---------------eeEEEee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN---------------IRDAEME  145 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~  145 (250)
                      ..++.+.      ||.++++++.|.+|++|-+.++++...+..++ ..+.+++|-|..               +++. .+
T Consensus       239 r~v~v~~------DGti~As~s~dqtl~vW~~~t~~~k~~lR~hE-h~vEci~wap~~~~~~i~~at~~~~~~~~l~-s~  310 (406)
T KOG0295|consen  239 RMVRVNQ------DGTIIASCSNDQTLRVWVVATKQCKAELREHE-HPVECIAWAPESSYPSISEATGSTNGGQVLG-SG  310 (406)
T ss_pred             EEEEecC------CeeEEEecCCCceEEEEEeccchhhhhhhccc-cceEEEEecccccCcchhhccCCCCCccEEE-ee
Confidence            9999998      99999999999999999999987666555543 566666665431               2333 44


Q ss_pred             eeee----ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCc
Q 025649          146 ILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK  221 (250)
Q Consensus       146 ~~~~----~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  221 (250)
                      ++|.    ++.....++.++.+|.+.|..++|+   |.|+||+++..|+++++||++++         .++.....|+..
T Consensus       311 SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~---p~Gkyi~ScaDDktlrvwdl~~~---------~cmk~~~ah~hf  378 (406)
T KOG0295|consen  311 SRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS---PGGKYILSCADDKTLRVWDLKNL---------QCMKTLEAHEHF  378 (406)
T ss_pred             cccceEEEEeccCCeEEEEEecccceeeeeEEc---CCCeEEEEEecCCcEEEEEeccc---------eeeeccCCCcce
Confidence            4443    3456778999999999999999999   89999999999999999999998         556677799999


Q ss_pred             eeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          222 VNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       222 v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      |+++.|+. +..+++||+-|.++++|.-
T Consensus       379 vt~lDfh~-~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  379 VTSLDFHK-TAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eEEEecCC-CCceEEeccccceeeeeec
Confidence            99999985 6669999999999999974

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.8e-32  Score=212.26  Aligned_cols=217  Identities=18%  Similarity=0.264  Sum_probs=189.0

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||..-+.++.+|. .|.++|..++|+|+.+ +++||++|..|++|+..+.+++.++. +            |-+.|
T Consensus        32 ~IQlWDYRM~tli~rFd-eHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~rrclftL~-G------------HlDYV   96 (1202)
T KOG0292|consen   32 VIQLWDYRMGTLIDRFD-EHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTRRCLFTLL-G------------HLDYV   96 (1202)
T ss_pred             eeeeehhhhhhHHhhhh-ccCCccceeeecCCCC-eEEecCCccEEEEEecccceehhhhc-c------------cccee
Confidence            48999999999999999 9999999999999999 99999999999999999999998887 4            68999


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCe-
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGK-  153 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-  153 (250)
                      ..+.|++      .--+|+++|.|.+|+||+..+.+++.....+ ...++|..|+|....+++      +..||+...+ 
T Consensus        97 Rt~~FHh------eyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRk  169 (1202)
T KOG0292|consen   97 RTVFFHH------EYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRK  169 (1202)
T ss_pred             EEeeccC------CCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccCCccceEEEecccceEEEEeecchhc
Confidence            9999998      8889999999999999999999998887776 478999999998888873      5566665311 


Q ss_pred             -------------------------eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccc
Q 025649          154 -------------------------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN  208 (250)
Q Consensus       154 -------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  208 (250)
                                               ..-..+.++||...|+-++|+   |.-.++++|+.|+.|++|.+...+.      
T Consensus       170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh---pTlpliVSG~DDRqVKlWrmnetKa------  240 (1202)
T KOG0292|consen  170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH---PTLPLIVSGADDRQVKLWRMNETKA------  240 (1202)
T ss_pred             cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec---CCcceEEecCCcceeeEEEeccccc------
Confidence                                     111235678999999999999   7778999999999999999987532      


Q ss_pred             cceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          209 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                       ..+....+|.+.|.++.|+| ...++++.|.|++|+|||+.
T Consensus       241 -WEvDtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~  280 (1202)
T KOG0292|consen  241 -WEVDTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMT  280 (1202)
T ss_pred             -eeehhhhcccCCcceEEecC-ccceeEecCCCccEEEEecc
Confidence             45567889999999999998 67799999999999999984

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.9e-31  Score=195.78  Aligned_cols=215  Identities=16%  Similarity=0.173  Sum_probs=183.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      ++||+. +|.++.+|. .|+++|.+|.|+.+|. +|++++.|+++.+||..++.....+.+.             .....
T Consensus       259 ~riw~~-~G~l~~tl~-~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~-------------s~~~l  322 (524)
T KOG0273|consen  259 ARIWNK-DGNLISTLG-QHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTVKQQFEFH-------------SAPAL  322 (524)
T ss_pred             EEEEec-Cchhhhhhh-ccCCceEEEEEcCCCC-EEEeccCCccEEEEeccCceEEEeeeec-------------cCCcc
Confidence            689996 688888999 9999999999999999 9999999999999999999888777755             33335


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeeccCeeeeee
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLD  158 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  158 (250)
                      .+.|-       +...+++++.|+.|+++.+....+...+.. +...|.++.|+|.|.+|++   .+...+|........
T Consensus       323 DVdW~-------~~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~  394 (524)
T KOG0273|consen  323 DVDWQ-------SNDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV  394 (524)
T ss_pred             ceEEe-------cCceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence            56776       577899999999999999998888888877 5699999999999999995   233344455555667


Q ss_pred             ccccCccccEEEEEeecCCC------CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649          159 YSVGGHTAAASCVAFSMFGE------RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES  232 (250)
Q Consensus       159 ~~~~~h~~~v~~~~~~p~~~------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (250)
                      ..+.+|...|+.+.|+|..|      .+..+++++.|++|++||+..+         .++..+..|..+|++++|+| +|
T Consensus       395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---------v~i~~f~kH~~pVysvafS~-~g  464 (524)
T KOG0273|consen  395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---------VPIHTLMKHQEPVYSVAFSP-NG  464 (524)
T ss_pred             hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---------ceeEeeccCCCceEEEEecC-CC
Confidence            78999999999999996332      2457999999999999999998         67788999999999999998 99


Q ss_pred             CeEEEeeCCceEEEEeCC
Q 025649          233 ENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       233 ~~l~s~~~d~~i~vw~~~  250 (250)
                      +++++|+.||.|.+|+.+
T Consensus       465 ~ylAsGs~dg~V~iws~~  482 (524)
T KOG0273|consen  465 RYLASGSLDGCVHIWSTK  482 (524)
T ss_pred             cEEEecCCCCeeEecccc
Confidence            999999999999999863

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.8e-32  Score=194.61  Aligned_cols=218  Identities=18%  Similarity=0.213  Sum_probs=166.2

Q ss_pred             CcEEEEccc---ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649            1 MWQIIDIRQ---HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         1 ti~iwd~~~---~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      |..+|++..   -++.+++. +|..+|..+.||||.+ +|++|+.|..+++||+.+|.....+..+            +.
T Consensus       247 Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdr-yLlaCg~~e~~~lwDv~tgd~~~~y~~~------------~~  312 (519)
T KOG0293|consen  247 TAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDR-YLLACGFDEVLSLWDVDTGDLRHLYPSG------------LG  312 (519)
T ss_pred             eEEEEEEecCcceeeeeeee-cccCceEEEEECCCCC-eEEecCchHheeeccCCcchhhhhcccC------------cC
Confidence            345676542   35678888 9999999999999999 9999999999999999999998888744            34


Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-----------
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-----------  146 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  146 (250)
                      ..+.+.+|.|      |+..+++|+.|+++..||+.... ....+......+.+++.++||++++.++.           
T Consensus       313 ~S~~sc~W~p------Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~  385 (519)
T KOG0293|consen  313 FSVSSCAWCP------DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA  385 (519)
T ss_pred             CCcceeEEcc------CCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence            6788999999      99999999999999999998532 22233333355666666666666653211           


Q ss_pred             ---------------------------------eeeccCeeeeeeccccCccccEEEEEeecCC-CCCcEEEEeeCCCeE
Q 025649          147 ---------------------------------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFG-ERGKYLISGGNDKLV  192 (250)
Q Consensus       147 ---------------------------------~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~~~l~s~~~d~~i  192 (250)
                                                       ...|+.+....++++.||+..-.-+. |+|. .+..++++||+|+.|
T Consensus       386 ~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr-SCFgg~~~~fiaSGSED~kv  464 (519)
T KOG0293|consen  386 RVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIR-SCFGGGNDKFIASGSEDSKV  464 (519)
T ss_pred             hhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEE-eccCCCCcceEEecCCCceE
Confidence                                             01111122334456777776533332 1121 345799999999999


Q ss_pred             EEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          193 KVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       193 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +||+..++         .++..+.+|...|++++|+|.+...||+||.||+|+||..
T Consensus       465 yIWhr~sg---------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  465 YIWHRISG---------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             EEEEccCC---------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence            99999998         8888999999999999999999999999999999999965

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.7e-32  Score=203.80  Aligned_cols=216  Identities=18%  Similarity=0.275  Sum_probs=186.0

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|.|||.++..+++.+. -..-+|.+..|-+..+ -+++|++|..|++|+..+++.+..|..             |++.|
T Consensus        36 ~V~IWnyetqtmVksfe-V~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~ekV~~FeA-------------H~DyI  100 (794)
T KOG0276|consen   36 DVQIWNYETQTMVKSFE-VSEVPVRAAKFIARKN-WIVTGSDDMQIRVFNYNTGEKVKTFEA-------------HSDYI  100 (794)
T ss_pred             eeEEEecccceeeeeee-ecccchhhheeeeccc-eEEEecCCceEEEEecccceeeEEeec-------------cccce
Confidence            47899999999999999 8889999999999888 699999999999999999999999984             58999


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeeccc-ceeEEEeeeeeec----cCeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV-NIRDAEMEILDQS----GGKRL  155 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~  155 (250)
                      .+++.+|      ..-++++++.|-+|++||.+.+-........+...+++++|+|. .+.++ +++.|.+    .....
T Consensus       101 R~iavHP------t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa-S~sLDrTVKVWslgs~  173 (794)
T KOG0276|consen  101 RSIAVHP------TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA-SASLDRTVKVWSLGSP  173 (794)
T ss_pred             eeeeecC------CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee-eeeccccEEEEEcCCC
Confidence            9999999      88999999999999999999876665555556689999999995 45555 5555544    34555


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                      .+..++++|...|+|+.|-|- .+..+|+||+.|.+|+|||.++.         .++..+.+|...|..+.|+| .-.+|
T Consensus       174 ~~nfTl~gHekGVN~Vdyy~~-gdkpylIsgaDD~tiKvWDyQtk---------~CV~TLeGHt~Nvs~v~fhp-~lpii  242 (794)
T KOG0276|consen  174 HPNFTLEGHEKGVNCVDYYTG-GDKPYLISGADDLTIKVWDYQTK---------SCVQTLEGHTNNVSFVFFHP-ELPII  242 (794)
T ss_pred             CCceeeeccccCcceEEeccC-CCcceEEecCCCceEEEeecchH---------HHHHHhhcccccceEEEecC-CCcEE
Confidence            667899999999999999831 23469999999999999999998         56677899999999999998 55689


Q ss_pred             EEeeCCceEEEEeC
Q 025649          236 VVCDTSKVVKVYSI  249 (250)
Q Consensus       236 ~s~~~d~~i~vw~~  249 (250)
                      ++||.||+++||+-
T Consensus       243 isgsEDGTvriWhs  256 (794)
T KOG0276|consen  243 ISGSEDGTVRIWNS  256 (794)
T ss_pred             EEecCCccEEEecC
Confidence            99999999999973

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-31  Score=205.65  Aligned_cols=222  Identities=18%  Similarity=0.186  Sum_probs=184.5

Q ss_pred             CcEEEEcccce----eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccc-eecCCCCCCCCCCccc
Q 025649            1 MWQIIDIRQHC----LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI-VNFGLPENNGNAGQCY   75 (250)
Q Consensus         1 ti~iwd~~~~~----~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~   75 (250)
                      ++++|.++.+.    ++.... +|++.|.+++++..+..+|+++|.|+++++|++...+.... +.+     ........
T Consensus       388 svilWr~~~~~~~~~~~a~~~-gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~-----~~~~t~~a  461 (775)
T KOG0319|consen  388 SVILWRLNNNCSKSLCVAQAN-GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL-----TCRYTERA  461 (775)
T ss_pred             eEEEEEecCCcchhhhhhhhc-ccccccceeeecccCccEEEEecCCceEEEecCCCccccccccee-----hhhHHHHh
Confidence            57899774332    445566 99999999999988877999999999999999976322111 000     01123445


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeeccC
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGG  152 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  152 (250)
                      |...|++++++|      +.+++++|++|++.++|+++.......+..+ ...+.++.|+|..+.+++   .....+|..
T Consensus       462 HdKdIN~Vaia~------ndkLiAT~SqDktaKiW~le~~~l~~vLsGH-~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i  534 (775)
T KOG0319|consen  462 HDKDINCVAIAP------NDKLIATGSQDKTAKIWDLEQLRLLGVLSGH-TRGVWCVSFSKNDQLLATCSGDKTVKIWSI  534 (775)
T ss_pred             hcccccceEecC------CCceEEecccccceeeecccCceEEEEeeCC-ccceEEEEeccccceeEeccCCceEEEEEe
Confidence            889999999999      9999999999999999999977777766665 589999999999999995   233445556


Q ss_pred             eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649          153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES  232 (250)
Q Consensus       153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (250)
                      ..+.++++|.||...|..+.|-   .+|..|++++.||.|++|++++.         ++...+..|+..|++++.++ ..
T Consensus       535 s~fSClkT~eGH~~aVlra~F~---~~~~qliS~~adGliKlWnikt~---------eC~~tlD~H~DrvWaL~~~~-~~  601 (775)
T KOG0319|consen  535 STFSCLKTFEGHTSAVLRASFI---RNGKQLISAGADGLIKLWNIKTN---------ECEMTLDAHNDRVWALSVSP-LL  601 (775)
T ss_pred             ccceeeeeecCccceeEeeeee---eCCcEEEeccCCCcEEEEeccch---------hhhhhhhhccceeEEEeecC-cc
Confidence            7788999999999999999999   89999999999999999999998         77778899999999999997 66


Q ss_pred             CeEEEeeCCceEEEEe
Q 025649          233 ENLVVCDTSKVVKVYS  248 (250)
Q Consensus       233 ~~l~s~~~d~~i~vw~  248 (250)
                      ..++||+.||.|.+|.
T Consensus       602 ~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  602 DMFVTGGGDGRIIFWK  617 (775)
T ss_pred             ceeEecCCCeEEEEee
Confidence            7899999999999994

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-32  Score=194.34  Aligned_cols=211  Identities=21%  Similarity=0.299  Sum_probs=182.3

Q ss_pred             eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649           14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK   93 (250)
Q Consensus        14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (250)
                      +.++.+..+.+.|..|+|||+ +|++|+.||.|.+||..+|+..+.++...     ...+..+.+.|.|+.|+.      
T Consensus       206 r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQA-----qd~fMMmd~aVlci~FSR------  273 (508)
T KOG0275|consen  206 RSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQA-----QDNFMMMDDAVLCISFSR------  273 (508)
T ss_pred             hheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhh-----hcceeecccceEEEeecc------
Confidence            445556778899999999999 99999999999999999999877776552     234455778999999998      


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc----CeeeeeeccccCccccEE
Q 025649           94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAAS  169 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~  169 (250)
                      |...+++|+.||.|++|.+++|.++.++...+...+.++.|+.|+..++ .+++|...    .+..++++.++||...|+
T Consensus       274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn  352 (508)
T KOG0275|consen  274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVN  352 (508)
T ss_pred             cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCcccccc
Confidence            9999999999999999999999999999988889999999999999998 55555543    467788999999999999


Q ss_pred             EEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee--ccCCceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649          170 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPTESENLVVCDTSKVVKVY  247 (250)
Q Consensus       170 ~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw  247 (250)
                      ...|.   ++|.++++++.||+|++|+.++..+.         ..+.  +...+|+++...|.+...+++|...++|.+-
T Consensus       353 ~a~ft---~dG~~iisaSsDgtvkvW~~KtteC~---------~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im  420 (508)
T KOG0275|consen  353 EATFT---DDGHHIISASSDGTVKVWHGKTTECL---------STFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM  420 (508)
T ss_pred             ceEEc---CCCCeEEEecCCccEEEecCcchhhh---------hhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence            99999   89999999999999999999998554         3333  3445799999999999999999999999988


Q ss_pred             eC
Q 025649          248 SI  249 (250)
Q Consensus       248 ~~  249 (250)
                      ++
T Consensus       421 n~  422 (508)
T KOG0275|consen  421 NM  422 (508)
T ss_pred             ec
Confidence            76

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.8e-30  Score=176.83  Aligned_cols=226  Identities=17%  Similarity=0.155  Sum_probs=176.3

Q ss_pred             CcEEEEccc---ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC--CCccceecCCCCCCCCCCccc
Q 025649            1 MWQIIDIRQ---HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         1 ti~iwd~~~---~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      +||+|++..   -.+...+..+|+..|.+++|+|.|+ +|++||.|.++.||.-..+  +++..+. +            
T Consensus        38 ~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~efecv~~lE-G------------  103 (312)
T KOG0645|consen   38 AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDATVVIWKKEDGEFECVATLE-G------------  103 (312)
T ss_pred             eEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccceEEEeecCCCceeEEeeee-c------------
Confidence            489999874   4555567668999999999999999 9999999999999987654  4555665 3            


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce--eEeeccCCCCCCccceeecccceeEEEeeeeeecc--
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL--NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG--  151 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  151 (250)
                      |...|.+++|++      +|++||+++.|+.|-+|....+.  ........+...+..+.|+|...+|+ .+++|.++  
T Consensus       104 HEnEVK~Vaws~------sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~-S~SYDnTIk~  176 (312)
T KOG0645|consen  104 HENEVKCVAWSA------SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF-SCSYDNTIKV  176 (312)
T ss_pred             cccceeEEEEcC------CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeE-EeccCCeEEE
Confidence            688999999999      99999999999999999998533  23334445568899999999999998 44444332  


Q ss_pred             -----CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce-e---------------------
Q 025649          152 -----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV-Q---------------------  204 (250)
Q Consensus       152 -----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~---------------------  204 (250)
                           ...-.+..++.+|.+.|.+++|+   +.|..|++++.|++++||-+.+.-.. +                     
T Consensus       177 ~~~~~dddW~c~~tl~g~~~TVW~~~F~---~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~  253 (312)
T KOG0645|consen  177 YRDEDDDDWECVQTLDGHENTVWSLAFD---NIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDD  253 (312)
T ss_pred             EeecCCCCeeEEEEecCccceEEEEEec---CCCceEEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCC
Confidence                 34456788999999999999999   89999999999999999984322110 0                     


Q ss_pred             ------cccc---c--c-eeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          205 ------TSIN---N--D-LLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       205 ------~~~~---~--~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                            ....   +  + +......|+..|+++.|.|.....|++|+.||.|++|.+.
T Consensus       254 ~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  254 AIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence                  0000   0  1 1123346888999999999556789999999999999863

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=6.3e-32  Score=183.89  Aligned_cols=211  Identities=14%  Similarity=0.146  Sum_probs=178.6

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC-ccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      |-+|||.-+|..+..|.  |..-|.+++|+.|.. +|++|+.+..+|+||++..+. ...+. +            |+..
T Consensus        82 takvw~a~tgdelhsf~--hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~App~E~~-g------------htg~  145 (334)
T KOG0278|consen   82 TAKVWDAVTGDELHSFE--HKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAPPKEIS-G------------HTGG  145 (334)
T ss_pred             hhhhhhhhhhhhhhhhh--hhheeeeEEecccch-hhhccchHHHhhhhhccCCCCCchhhc-C------------CCCc
Confidence            45799999999999997  999999999999999 899999999999999987543 33333 3            7889


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE--eeeeeeccCeeeee
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE--MEILDQSGGKRLHL  157 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  157 (250)
                      |..+.|.-      ..+.+++++.|++||+||.+++.....+...  ..+.++.++++|+++..  .++...++...+..
T Consensus       146 Ir~v~wc~------eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~--s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~  217 (334)
T KOG0278|consen  146 IRTVLWCH------EDKCILSSADDKTVRLWDHRTGTEVQSLEFN--SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGL  217 (334)
T ss_pred             ceeEEEec------cCceEEeeccCCceEEEEeccCcEEEEEecC--CCCcceeeccCCCEEEEecCceeEEeccccccc
Confidence            99999986      7788888899999999999999999888876  78999999999999874  33445556666666


Q ss_pred             eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee-eeccCCceeEEEecCCCCCeEE
Q 025649          158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      ++.++. ...|.+...+   |+...+++|++|..++.||..++.         .+.. ..+|.++|.++.|+| ||...+
T Consensus       218 lKs~k~-P~nV~SASL~---P~k~~fVaGged~~~~kfDy~Tge---------Ei~~~nkgh~gpVhcVrFSP-dGE~yA  283 (334)
T KOG0278|consen  218 LKSYKM-PCNVESASLH---PKKEFFVAGGEDFKVYKFDYNTGE---------EIGSYNKGHFGPVHCVRFSP-DGELYA  283 (334)
T ss_pred             eeeccC-cccccccccc---CCCceEEecCcceEEEEEeccCCc---------eeeecccCCCCceEEEEECC-CCceee
Confidence            666654 3468888999   788999999999999999999984         3344 489999999999998 999999


Q ss_pred             EeeCCceEEEEeC
Q 025649          237 VCDTSKVVKVYSI  249 (250)
Q Consensus       237 s~~~d~~i~vw~~  249 (250)
                      +||.||+|+||.+
T Consensus       284 sGSEDGTirlWQt  296 (334)
T KOG0278|consen  284 SGSEDGTIRLWQT  296 (334)
T ss_pred             ccCCCceEEEEEe
Confidence            9999999999985

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=8e-31  Score=186.83  Aligned_cols=210  Identities=17%  Similarity=0.226  Sum_probs=181.8

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      ||+|||+.+|++..++. ||...|..+++|+..+ ||++++.|+.|+.||++..+.++.+. +            |-..|
T Consensus       174 tikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~nkvIR~Yh-G------------HlS~V  238 (460)
T KOG0285|consen  174 TIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEYNKVIRHYH-G------------HLSGV  238 (460)
T ss_pred             eeEEEEcccCeEEEeec-chhheeeeeeecccCc-eEEEecCCCeeEEEechhhhhHHHhc-c------------cccee
Confidence            68999999999999999 9999999999999999 99999999999999999999998887 4            67899


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKR  154 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  154 (250)
                      ++++.+|      .-..|++|+.|.++++||+++...+..+..+ ...+.++.+.|....+++      +..||....+ 
T Consensus       239 ~~L~lhP------Tldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk-  310 (460)
T KOG0285|consen  239 YCLDLHP------TLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK-  310 (460)
T ss_pred             EEEeccc------cceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEeecCCCceEEecCCceEEEeeeccCc-
Confidence            9999999      8899999999999999999998887777665 477888888876655553      4455555544 


Q ss_pred             eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649          155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  234 (250)
                        ....+..|+..|.+++.+   |....+++++.| .|+-|++..+         ..+..+.+|..-|++++... |+ +
T Consensus       311 --t~~tlt~hkksvral~lh---P~e~~fASas~d-nik~w~~p~g---------~f~~nlsgh~~iintl~~ns-D~-v  373 (460)
T KOG0285|consen  311 --TMITLTHHKKSVRALCLH---PKENLFASASPD-NIKQWKLPEG---------EFLQNLSGHNAIINTLSVNS-DG-V  373 (460)
T ss_pred             --eeEeeecccceeeEEecC---CchhhhhccCCc-cceeccCCcc---------chhhccccccceeeeeeecc-Cc-e
Confidence              445777899999999999   788889998876 7999999998         67777889999999999985 54 8


Q ss_pred             EEEeeCCceEEEEeCC
Q 025649          235 LVVCDTSKVVKVYSIS  250 (250)
Q Consensus       235 l~s~~~d~~i~vw~~~  250 (250)
                      +++|+.+|.+.+||.+
T Consensus       374 ~~~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  374 LVSGGDNGSIMFWDWK  389 (460)
T ss_pred             EEEcCCceEEEEEecC
Confidence            9999999999999963

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=4.5e-31  Score=188.09  Aligned_cols=205  Identities=18%  Similarity=0.233  Sum_probs=174.2

Q ss_pred             ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649           10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD   89 (250)
Q Consensus        10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (250)
                      .++.+.++ +|.+.|.|+++.|.++ .|++|+.|++++|||+.+|+...++. +            |...|..+++++  
T Consensus       141 wKl~rVi~-gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkltlt-G------------hi~~vr~vavS~--  203 (460)
T KOG0285|consen  141 WKLYRVIS-GHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLTLT-G------------HIETVRGVAVSK--  203 (460)
T ss_pred             ceehhhhh-hccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEeec-c------------hhheeeeeeecc--
Confidence            45667788 9999999999999988 79999999999999999999888876 4            578899999998  


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeeeccccCccc
Q 025649           90 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGGHTA  166 (250)
Q Consensus        90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~  166 (250)
                          ...++++++.|+.|+.||++..+.+.....+ -..+.+++.+|.-..+++.+   ....|+.+....+..+.||..
T Consensus       204 ----rHpYlFs~gedk~VKCwDLe~nkvIR~YhGH-lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~  278 (460)
T KOG0285|consen  204 ----RHPYLFSAGEDKQVKCWDLEYNKVIRHYHGH-LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN  278 (460)
T ss_pred             ----cCceEEEecCCCeeEEEechhhhhHHHhccc-cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC
Confidence                8899999999999999999988777666555 37899999999999888522   233344444556778999999


Q ss_pred             cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEE
Q 025649          167 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV  246 (250)
Q Consensus       167 ~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~v  246 (250)
                      +|.++.+.   |-...+++||.|++|++||++.+         +.......|...|.+++.+| ....|++++.|. |+-
T Consensus       279 ~V~~V~~~---~~dpqvit~S~D~tvrlWDl~ag---------kt~~tlt~hkksvral~lhP-~e~~fASas~dn-ik~  344 (460)
T KOG0285|consen  279 PVASVMCQ---PTDPQVITGSHDSTVRLWDLRAG---------KTMITLTHHKKSVRALCLHP-KENLFASASPDN-IKQ  344 (460)
T ss_pred             cceeEEee---cCCCceEEecCCceEEEeeeccC---------ceeEeeecccceeeEEecCC-chhhhhccCCcc-cee
Confidence            99999999   55668999999999999999998         56677889999999999998 666789998775 888


Q ss_pred             EeCC
Q 025649          247 YSIS  250 (250)
Q Consensus       247 w~~~  250 (250)
                      |+++
T Consensus       345 w~~p  348 (460)
T KOG0285|consen  345 WKLP  348 (460)
T ss_pred             ccCC
Confidence            8764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=1e-29  Score=212.41  Aligned_cols=223  Identities=15%  Similarity=0.163  Sum_probs=171.1

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +|+|||+.+++.+..+. +|.+.|++++|+| ++. +|++|+.||+|++||++++..+..+.              +...
T Consensus       556 ~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~~~~~~~~--------------~~~~  619 (793)
T PLN00181        556 VVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPT-LLASGSDDGSVKLWSINQGVSIGTIK--------------TKAN  619 (793)
T ss_pred             eEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCC-EEEEEcCCCEEEEEECCCCcEEEEEe--------------cCCC
Confidence            58999999999999999 9999999999997 566 89999999999999999888877775              2356


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccC-
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGG-  152 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-  152 (250)
                      +.++.|++     +++.+|++|+.||.|++||+++..........+...+.++.|. ++..+++      +..|+.... 
T Consensus       620 v~~v~~~~-----~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~  693 (793)
T PLN00181        620 ICCVQFPS-----ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI  693 (793)
T ss_pred             eEEEEEeC-----CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCc
Confidence            88899865     4799999999999999999987653322223445788899997 5666663      223433221 


Q ss_pred             --eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec--cccccee--eeeeccCCceeEEE
Q 025649          153 --KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT--SINNDLL--IKNINLNKKVNWLC  226 (250)
Q Consensus       153 --~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~--~~~~~~~~~v~~~~  226 (250)
                        ....++..+.+|...+.++.|+   +++.+|++|+.|+.|++|+.........  .......  .....|...|.+++
T Consensus       694 ~~~~~~~l~~~~gh~~~i~~v~~s---~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~  770 (793)
T PLN00181        694 SGINETPLHSFMGHTNVKNFVGLS---VSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC  770 (793)
T ss_pred             cccCCcceEEEcCCCCCeeEEEEc---CCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence              1234567888999999999999   8899999999999999999876532210  0000000  01234566799999


Q ss_pred             ecCCCCCeEEEeeCCceEEEEeC
Q 025649          227 TTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       227 ~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      |+| ++..|++|+.||.|+||++
T Consensus       771 ws~-~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        771 WRG-QSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EcC-CCCeEEEecCCCcEEEEec
Confidence            997 8889999999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=2.2e-30  Score=180.33  Aligned_cols=213  Identities=19%  Similarity=0.200  Sum_probs=180.4

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      ||+.||.++|+.+++++ +|.+-|+.+.-+.-|..++.|++.||++++||+++...++++.              .+-++
T Consensus       113 ~v~~wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--------------~kyql  177 (338)
T KOG0265|consen  113 TVRGWDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--------------NKYQL  177 (338)
T ss_pred             eEEEEecccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--------------cceeE
Confidence            58999999999999999 9999999999777787788999999999999999999988886              34679


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKR  154 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  154 (250)
                      +++.|..      .+..+.+|+-|+.|++||++.+........+. ..|..+..+|+|.++.+      ...||..-...
T Consensus       178 tAv~f~d------~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~-DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p  250 (338)
T KOG0265|consen  178 TAVGFKD------TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHA-DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP  250 (338)
T ss_pred             EEEEecc------cccceeeccccCceeeeccccCcceEEeeccc-CceeeEEeccCCCccccccccceEEEEEecccCC
Confidence            9999997      89999999999999999999988887777664 78999999999999984      44455554322


Q ss_pred             -eeeeccccCccc----cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649          155 -LHLDYSVGGHTA----AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       155 -~~~~~~~~~h~~----~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                       .+++..+.+|.-    ....++|+   |+++.+.+|+.|+.+++||....         .++..+.+|.+.|+.+.|+|
T Consensus       251 ~~R~v~if~g~~hnfeknlL~csws---p~~~~i~ags~dr~vyvwd~~~r---------~~lyklpGh~gsvn~~~Fhp  318 (338)
T KOG0265|consen  251 SQRCVKIFQGHIHNFEKNLLKCSWS---PNGTKITAGSADRFVYVWDTTSR---------RILYKLPGHYGSVNEVDFHP  318 (338)
T ss_pred             CCceEEEeecchhhhhhhcceeecc---CCCCccccccccceEEEeecccc---------cEEEEcCCcceeEEEeeecC
Confidence             233666666532    23456777   89999999999999999999997         67778899999999999998


Q ss_pred             CCCCeEEEeeCCceEEEEe
Q 025649          230 TESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       230 ~~~~~l~s~~~d~~i~vw~  248 (250)
                       ...+|.+++.|.+|++=.
T Consensus       319 -~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  319 -TEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             -CCcEEEEeccCceeEeec
Confidence             677999999999998743

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.8e-31  Score=179.41  Aligned_cols=216  Identities=16%  Similarity=0.186  Sum_probs=179.3

Q ss_pred             CcEEEEcc-cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIR-QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~-~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +++|||+. ...++..++ .|...|.++.|++..+..++++|-|++|++|+...++.+.++. +            |..-
T Consensus        84 SLrl~d~~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-g------------h~~~  149 (311)
T KOG0277|consen   84 SLRLFDLTMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-G------------HNSC  149 (311)
T ss_pred             eEEEeccCCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-C------------CccE
Confidence            57999965 446888999 9999999999999876688899999999999999999999987 4            6889


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe-------eeeeeccC
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM-------EILDQSGG  152 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  152 (250)
                      |+...|+|     ...+.+++++.|+++++||++..-....+..+ ...+.++.|+.-...++..       ..||.+..
T Consensus       150 Iy~a~~sp-----~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah-~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~  223 (311)
T KOG0277|consen  150 IYQAAFSP-----HIPNLFASASGDGTLRLWDVRSPGKFMSIEAH-NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL  223 (311)
T ss_pred             EEEEecCC-----CCCCeEEEccCCceEEEEEecCCCceeEEEec-cceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence            99999999     68899999999999999999874323334444 3789999999876666543       34554443


Q ss_pred             eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649          153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES  232 (250)
Q Consensus       153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (250)
                      +  .++..+.+|.-.|..++|||  .....|++++.|-+++|||.....        ..+.....|++.+..+.|++-++
T Consensus       224 r--~pl~eL~gh~~AVRkvk~Sp--h~~~lLaSasYDmT~riw~~~~~d--------s~~e~~~~HtEFv~g~Dws~~~~  291 (311)
T KOG0277|consen  224 R--TPLFELNGHGLAVRKVKFSP--HHASLLASASYDMTVRIWDPERQD--------SAIETVDHHTEFVCGLDWSLFDP  291 (311)
T ss_pred             c--ccceeecCCceEEEEEecCc--chhhHhhhccccceEEecccccch--------hhhhhhhccceEEeccccccccC
Confidence            3  45788899999999999997  456799999999999999998653        34456678999999999999888


Q ss_pred             CeEEEeeCCceEEEEe
Q 025649          233 ENLVVCDTSKVVKVYS  248 (250)
Q Consensus       233 ~~l~s~~~d~~i~vw~  248 (250)
                      .++|+++.|..++||+
T Consensus       292 ~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  292 GQVASTGWDELLYVWN  307 (311)
T ss_pred             ceeeecccccceeeec
Confidence            8999999999999998

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=6.3e-29  Score=195.51  Aligned_cols=220  Identities=15%  Similarity=0.127  Sum_probs=157.6

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCC-CCeEEEEecCCCeEEEEEccCCCC-ccceecCCCCCCCCCCcccCCCc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPW-KPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      |++|+......+..+. +|.+.|.+++|+|+ +. +|++|+.||+|++||+.++.. ...+.      .....+..|...
T Consensus        56 I~L~~~~r~~~v~~L~-gH~~~V~~lafsP~~~~-lLASgS~DgtIrIWDi~t~~~~~~~i~------~p~~~L~gH~~~  127 (568)
T PTZ00420         56 IRLENQMRKPPVIKLK-GHTSSILDLQFNPCFSE-ILASGSEDLTIRVWEIPHNDESVKEIK------DPQCILKGHKKK  127 (568)
T ss_pred             EEeeecCCCceEEEEc-CCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCCccccccc------cceEEeecCCCc
Confidence            6788877777778899 99999999999997 55 899999999999999986432 11110      000112236788


Q ss_pred             eeEEecCCCcccCCCCCE-EEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeee
Q 025649           80 VHAIAIPDADMLDKTNKI-CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRL  155 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  155 (250)
                      |.+++|+|      ++.. |++++.|++|++||+++++....+..  ...+.+++|+|+|.++++.+   ....++....
T Consensus       128 V~sVaf~P------~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~--~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg  199 (568)
T PTZ00420        128 ISIIDWNP------MNYYIMCSSGFDSFVNIWDIENEKRAFQINM--PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ  199 (568)
T ss_pred             EEEEEECC------CCCeEEEEEeCCCeEEEEECCCCcEEEEEec--CCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence            99999999      6664 57899999999999999876655543  36799999999999998532   2333444445


Q ss_pred             eeeccccCccccEEEE-----EeecCCCCCcEEEEeeCCC----eEEEEecCCCcceecccccceeeeee--ccCCceeE
Q 025649          156 HLDYSVGGHTAAASCV-----AFSMFGERGKYLISGGNDK----LVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNW  224 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~-----~~~p~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~  224 (250)
                      +.+..+.+|.+.+.+.     .|+   +++.++++++.|+    .|+|||++...        .++....  .+.+.+. 
T Consensus       200 ~~i~tl~gH~g~~~s~~v~~~~fs---~d~~~IlTtG~d~~~~R~VkLWDlr~~~--------~pl~~~~ld~~~~~L~-  267 (568)
T PTZ00420        200 EIASSFHIHDGGKNTKNIWIDGLG---GDDNYILSTGFSKNNMREMKLWDLKNTT--------SALVTMSIDNASAPLI-  267 (568)
T ss_pred             cEEEEEecccCCceeEEEEeeeEc---CCCCEEEEEEcCCCCccEEEEEECCCCC--------CceEEEEecCCccceE-
Confidence            5667788898765433     345   6788888877664    79999999642        2332222  2222222 


Q ss_pred             EEecCCCCCeEEEeeCCceEEEEeC
Q 025649          225 LCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       225 ~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      -.+.+.++.++++|+.|+.|++|++
T Consensus       268 p~~D~~tg~l~lsGkGD~tIr~~e~  292 (568)
T PTZ00420        268 PHYDESTGLIYLIGKGDGNCRYYQH  292 (568)
T ss_pred             EeeeCCCCCEEEEEECCCeEEEEEc
Confidence            2355557889999999999999997

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-29  Score=174.08  Aligned_cols=201  Identities=13%  Similarity=0.156  Sum_probs=176.5

Q ss_pred             eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649           15 SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT   94 (250)
Q Consensus        15 ~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (250)
                      .++ ||+.+++.+.++.+|. +|.+|+.|.+..+|-..+|+.+.++. +            |...|+++++..      +
T Consensus         5 ~l~-GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGty~-G------------HtGavW~~Did~------~   63 (327)
T KOG0643|consen    5 LLQ-GHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGTYD-G------------HTGAVWCCDIDW------D   63 (327)
T ss_pred             ccc-cCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeeeec-C------------CCceEEEEEecC------C
Confidence            356 9999999999999999 99999999999999998999999987 4            689999999997      8


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE-----------eeeeeeccC----eeeeeec
Q 025649           95 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE-----------MEILDQSGG----KRLHLDY  159 (250)
Q Consensus        95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~----~~~~~~~  159 (250)
                      .+++++|+.|.++++||+++|+.+...+.+  ..+..+.|+++|.+++.           +...+....    ...++..
T Consensus        64 s~~liTGSAD~t~kLWDv~tGk~la~~k~~--~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~  141 (327)
T KOG0643|consen   64 SKHLITGSADQTAKLWDVETGKQLATWKTN--SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL  141 (327)
T ss_pred             cceeeeccccceeEEEEcCCCcEEEEeecC--CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence            999999999999999999999999988877  78999999999988873           334444422    2445567


Q ss_pred             cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649          160 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD  239 (250)
Q Consensus       160 ~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  239 (250)
                      .+..+...++.+-|.   |.+++|++|.+||.|.+||++++.        +.+.....|+..|+.|.+++ |..+++++|
T Consensus       142 kI~t~~skit~a~Wg---~l~~~ii~Ghe~G~is~~da~~g~--------~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s  209 (327)
T KOG0643|consen  142 KIPTPDSKITSALWG---PLGETIIAGHEDGSISIYDARTGK--------ELVDSDEEHSSKINDLQFSR-DRTYFITGS  209 (327)
T ss_pred             EecCCccceeeeeec---ccCCEEEEecCCCcEEEEEcccCc--------eeeechhhhccccccccccC-CcceEEecc
Confidence            777888999999999   899999999999999999999974        45556678999999999997 889999999


Q ss_pred             CCceEEEEeCC
Q 025649          240 TSKVVKVYSIS  250 (250)
Q Consensus       240 ~d~~i~vw~~~  250 (250)
                      .|.+-++||++
T Consensus       210 ~Dttakl~D~~  220 (327)
T KOG0643|consen  210 KDTTAKLVDVR  220 (327)
T ss_pred             cCccceeeecc
Confidence            99999999974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=6.1e-30  Score=197.06  Aligned_cols=219  Identities=16%  Similarity=0.200  Sum_probs=178.0

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      +|++++.+..+. .+. ||++.|.++....+|. +|+|||.|.++++|.++++......-         .....|...|.
T Consensus       348 lr~y~~~~~~c~-ii~-GH~e~vlSL~~~~~g~-llat~sKD~svilWr~~~~~~~~~~~---------a~~~gH~~svg  415 (775)
T KOG0319|consen  348 LRLYTLPTSYCQ-IIP-GHTEAVLSLDVWSSGD-LLATGSKDKSVILWRLNNNCSKSLCV---------AQANGHTNSVG  415 (775)
T ss_pred             eEEEecCCCceE-EEe-CchhheeeeeecccCc-EEEEecCCceEEEEEecCCcchhhhh---------hhhcccccccc
Confidence            688888877765 777 9999999999777776 99999999999999996554322111         01123788899


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE---e-----eccCCCCCCccceeecccceeEEEe---eeeeec
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI---S-----RSKSTTKPLKGSQSTSKVNIRDAEM---EILDQS  150 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  150 (250)
                      +++++.     ..-..+++++.|+++++|++...+..   .     .....++..|.+++++|+.+++++.   .....+
T Consensus       416 ava~~~-----~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW  490 (775)
T KOG0319|consen  416 AVAGSK-----LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIW  490 (775)
T ss_pred             eeeecc-----cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeee
Confidence            999975     35578999999999999999862211   1     1233466899999999999999952   233445


Q ss_pred             cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCC
Q 025649          151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT  230 (250)
Q Consensus       151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  230 (250)
                      ..+.......+.||+..|.|+.|+   ++.+.++|+|.|++|+||.+.+.         .++.++.+|...|..+.|.. 
T Consensus       491 ~le~~~l~~vLsGH~RGvw~V~Fs---~~dq~laT~SgD~TvKIW~is~f---------SClkT~eGH~~aVlra~F~~-  557 (775)
T KOG0319|consen  491 DLEQLRLLGVLSGHTRGVWCVSFS---KNDQLLATCSGDKTVKIWSISTF---------SCLKTFEGHTSAVLRASFIR-  557 (775)
T ss_pred             cccCceEEEEeeCCccceEEEEec---cccceeEeccCCceEEEEEeccc---------eeeeeecCccceeEeeeeee-
Confidence            556778889999999999999999   88899999999999999999998         78889999999999999996 


Q ss_pred             CCCeEEEeeCCceEEEEeCC
Q 025649          231 ESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       231 ~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ++..|++++.||.|++|++.
T Consensus       558 ~~~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  558 NGKQLISAGADGLIKLWNIK  577 (775)
T ss_pred             CCcEEEeccCCCcEEEEecc
Confidence            78889999999999999974

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.4e-29  Score=176.40  Aligned_cols=214  Identities=18%  Similarity=0.206  Sum_probs=172.3

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCC-eEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP-WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      ||+|||+.+.+.+..+- .|.+.|+++.|.+... ..|++|+.||.|.+|+....+++..++.             |...
T Consensus        64 tI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~-------------H~~~  129 (362)
T KOG0294|consen   64 TIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKA-------------HKGQ  129 (362)
T ss_pred             cEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecc-------------cccc
Confidence            79999999999999998 9999999999998752 2599999999999999999988888884             4677


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee--eeeccCeeeee
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI--LDQSGGKRLHL  157 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  157 (250)
                      |+.++++|      .+++.++.+.|+.++.||+-.|+.-......  .....+.|+|.|.+++..+.  .+.........
T Consensus       130 Vt~lsiHP------S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v  201 (362)
T KOG0294|consen  130 VTDLSIHP------SGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASV  201 (362)
T ss_pred             cceeEecC------CCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEEcCCCCEEEEEeccEEEEEecccHhH
Confidence            99999999      9999999999999999999998876655554  34445999999998873221  22222222222


Q ss_pred             eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec-CCCCCeEE
Q 025649          158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT-PTESENLV  236 (250)
Q Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~  236 (250)
                      ...+.. ...+.|+.|.    ++..|++|..|+.|++||..+.         .++..+.+|..+|.++.+. .+++.+|+
T Consensus       202 ~~~i~~-~~r~l~~~~l----~~~~L~vG~d~~~i~~~D~ds~---------~~~~~~~AH~~RVK~i~~~~~~~~~~lv  267 (362)
T KOG0294|consen  202 FREIEN-PKRILCATFL----DGSELLVGGDNEWISLKDTDSD---------TPLTEFLAHENRVKDIASYTNPEHEYLV  267 (362)
T ss_pred             hhhhhc-cccceeeeec----CCceEEEecCCceEEEeccCCC---------ccceeeecchhheeeeEEEecCCceEEE
Confidence            222222 2457888886    6789999999999999999986         6677889999999999844 34778999


Q ss_pred             EeeCCceEEEEeCC
Q 025649          237 VCDTSKVVKVYSIS  250 (250)
Q Consensus       237 s~~~d~~i~vw~~~  250 (250)
                      |+|.||.|+|||++
T Consensus       268 TaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  268 TASSDGFIKVWDID  281 (362)
T ss_pred             EeccCceEEEEEcc
Confidence            99999999999974

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=1e-28  Score=183.89  Aligned_cols=230  Identities=17%  Similarity=0.142  Sum_probs=168.1

Q ss_pred             CcEEEEcccceeeeeec--cCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCC------------
Q 025649            1 MWQIIDIRQHCLYKSLR--AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE------------   66 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~------------   66 (250)
                      +|.+||=.+++.+..|.  .+|.+.|.+|+|+||++ .|+|+|.|.+++|||+.+.+++.++..+...            
T Consensus       213 ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd  291 (603)
T KOG0318|consen  213 KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD  291 (603)
T ss_pred             cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC
Confidence            47899999999998886  37999999999999999 8999999999999999988887776644320            


Q ss_pred             ------------------CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCC---
Q 025649           67 ------------------NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT---  125 (250)
Q Consensus        67 ------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---  125 (250)
                                        .........|...|+++..+|      ++++|++|+.||.|.-||..++..-......+   
T Consensus       292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~------d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nq  365 (603)
T KOG0318|consen  292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP------DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQ  365 (603)
T ss_pred             eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC------CCCEEEeeccCceEEEEecCCccccccccccccce
Confidence                              111234455888999999998      99999999999999999997653221100000   


Q ss_pred             ---------------------------------------CCCccceee--------------------------------
Q 025649          126 ---------------------------------------KPLKGSQST--------------------------------  134 (250)
Q Consensus       126 ---------------------------------------~~~~~~~~~--------------------------------  134 (250)
                                                             .....+++.                                
T Consensus       366 I~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~  445 (603)
T KOG0318|consen  366 IKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYE  445 (603)
T ss_pred             EEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccc
Confidence                                                   011112223                                


Q ss_pred             ------cccceeEEEeeeeeecc------CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcc
Q 025649          135 ------SKVNIRDAEMEILDQSG------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  202 (250)
Q Consensus       135 ------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~  202 (250)
                            +|++..++ +|..|...      .........+..|.++|++++||   |++.||++|...+.+.+||..+...
T Consensus       446 ~s~vAv~~~~~~va-VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS---pd~~yla~~Da~rkvv~yd~~s~~~  521 (603)
T KOG0318|consen  446 SSAVAVSPDGSEVA-VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS---PDGAYLAAGDASRKVVLYDVASREV  521 (603)
T ss_pred             cceEEEcCCCCEEE-EecccceEEEEEecCCcccceeeeecccCCceEEEEC---CCCcEEEEeccCCcEEEEEcccCce
Confidence                  33333333 22222221      00111122445689999999999   8999999999999999999999732


Q ss_pred             eecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          203 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                              ......-|+..|++++|+| +..++|||+.|-.|.||++.
T Consensus       522 --------~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  522 --------KTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             --------ecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEcc
Confidence                    2233445999999999998 88899999999999999874

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=1.9e-29  Score=175.69  Aligned_cols=217  Identities=16%  Similarity=0.213  Sum_probs=177.2

Q ss_pred             cEEEEcc-cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            2 WQIIDIR-QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         2 i~iwd~~-~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      |.+|++. .-+-..+++ +|.++|..+.|.+++. .+++++.|.+|+.||.++|+.++.++.             |...+
T Consensus        71 I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s-~i~S~gtDk~v~~wD~~tG~~~rk~k~-------------h~~~v  135 (338)
T KOG0265|consen   71 IVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGS-HILSCGTDKTVRGWDAETGKRIRKHKG-------------HTSFV  135 (338)
T ss_pred             EEEEeccccccceeeec-cccceeEeeeeccCCC-EEEEecCCceEEEEecccceeeehhcc-------------cccee
Confidence            6789954 445567888 9999999999999999 899999999999999999999999884             46778


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeee---eeccCeeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL---DQSGGKRLHL  157 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  157 (250)
                      .++..+.     .....+.+++.|+++++||++....+..+...  ..+.++.|..++..+.+.+..   ..|+......
T Consensus       136 Ns~~p~r-----rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k--yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~  208 (338)
T KOG0265|consen  136 NSLDPSR-----RGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK--YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG  208 (338)
T ss_pred             eecCccc-----cCCeEEEecCCCceEEEEeecccchhhccccc--eeEEEEEecccccceeeccccCceeeeccccCcc
Confidence            8887543     24567788899999999999987776666544  678899999998888843333   3556666677


Q ss_pred             eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC----ceeEEEecCCCCC
Q 025649          158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK----KVNWLCTTPTESE  233 (250)
Q Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~  233 (250)
                      ++.+.||...|+.+..+   ++|.++.+-+.|.++++||++.....+     +++..+.+|.-    ....++|+| ++.
T Consensus       209 ~~~lsGh~DtIt~lsls---~~gs~llsnsMd~tvrvwd~rp~~p~~-----R~v~if~g~~hnfeknlL~cswsp-~~~  279 (338)
T KOG0265|consen  209 LYTLSGHADTITGLSLS---RYGSFLLSNSMDNTVRVWDVRPFAPSQ-----RCVKIFQGHIHNFEKNLLKCSWSP-NGT  279 (338)
T ss_pred             eEEeecccCceeeEEec---cCCCccccccccceEEEEEecccCCCC-----ceEEEeecchhhhhhhcceeeccC-CCC
Confidence            88999999999999999   899999999999999999999864432     44555655432    345668887 888


Q ss_pred             eEEEeeCCceEEEEeC
Q 025649          234 NLVVCDTSKVVKVYSI  249 (250)
Q Consensus       234 ~l~s~~~d~~i~vw~~  249 (250)
                      .+..|+.|+.+++||.
T Consensus       280 ~i~ags~dr~vyvwd~  295 (338)
T KOG0265|consen  280 KITAGSADRFVYVWDT  295 (338)
T ss_pred             ccccccccceEEEeec
Confidence            8999999999999985

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.2e-29  Score=171.29  Aligned_cols=209  Identities=15%  Similarity=0.182  Sum_probs=166.3

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      ||++|++..+.+++++. +|...|..++.+.|+. .|++|+.|..+.+||+.+|+.++.+. +            |...|
T Consensus        40 tvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dns-kf~s~GgDk~v~vwDV~TGkv~Rr~r-g------------H~aqV  104 (307)
T KOG0316|consen   40 TVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNS-KFASCGGDKAVQVWDVNTGKVDRRFR-G------------HLAQV  104 (307)
T ss_pred             eEEeecccccceeeeec-CCCceeeecccccccc-ccccCCCCceEEEEEcccCeeeeecc-c------------cccee
Confidence            69999999999999999 9999999999999998 89999999999999999999999998 4            58899


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce--eEeeccCCCCCCccceeecccceeEEEeeeeeeccC----ee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL--NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG----KR  154 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  154 (250)
                      +.+.|+.      +...+++|+.|..+++||.++..  +++.+.. ....+.++..+.  ..++ .|+.|+...    +.
T Consensus       105 NtV~fNe------esSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a~D~V~Si~v~~--heIv-aGS~DGtvRtydiR~  174 (307)
T KOG0316|consen  105 NTVRFNE------ESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-AKDGVSSIDVAE--HEIV-AGSVDGTVRTYDIRK  174 (307)
T ss_pred             eEEEecC------cceEEEeccccceeEEEEcccCCCCccchhhh-hcCceeEEEecc--cEEE-eeccCCcEEEEEeec
Confidence            9999998      89999999999999999999743  2233322 234455554432  2333 444444432    11


Q ss_pred             eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE--EecCCCC
Q 025649          155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL--CTTPTES  232 (250)
Q Consensus       155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~  232 (250)
                      ......+  -..+|+|+.|+   ++++..+.++.|+++++-|-.++         +++..+++|.+.-+.+  ++.. ..
T Consensus       175 G~l~sDy--~g~pit~vs~s---~d~nc~La~~l~stlrLlDk~tG---------klL~sYkGhkn~eykldc~l~q-sd  239 (307)
T KOG0316|consen  175 GTLSSDY--FGHPITSVSFS---KDGNCSLASSLDSTLRLLDKETG---------KLLKSYKGHKNMEYKLDCCLNQ-SD  239 (307)
T ss_pred             ceeehhh--cCCcceeEEec---CCCCEEEEeeccceeeecccchh---------HHHHHhcccccceeeeeeeecc-cc
Confidence            2222222  34589999999   89999999999999999999998         8888999998875554  3443 44


Q ss_pred             CeEEEeeCCceEEEEeC
Q 025649          233 ENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       233 ~~l~s~~~d~~i~vw~~  249 (250)
                      .++++|+.||.|++||+
T Consensus       240 thV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  240 THVFSGSEDGKVYFWDL  256 (307)
T ss_pred             eeEEeccCCceEEEEEe
Confidence            57999999999999997

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=2.4e-30  Score=184.10  Aligned_cols=213  Identities=15%  Similarity=0.184  Sum_probs=171.0

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc--cceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN--KIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      ||++||+++++++.++- +|...|..+.|+..   +++|+|.|.++.+||+.....+  ...-.+            |.+
T Consensus       258 TvrvWDv~tge~l~tli-hHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrVLvG------------HrA  321 (499)
T KOG0281|consen  258 TVRVWDVNTGEPLNTLI-HHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRVLVG------------HRA  321 (499)
T ss_pred             eEEEEeccCCchhhHHh-hhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHHHhh------------hhh
Confidence            79999999999999999 99999999999975   8999999999999999765422  222224            788


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKR  154 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  154 (250)
                      .|+.+.|.        .+++++++.|.+|++|++.+.+.+..+..+. ..+.|+.+  .+++++ .|+.|.    ++...
T Consensus       322 aVNvVdfd--------~kyIVsASgDRTikvW~~st~efvRtl~gHk-RGIAClQY--r~rlvV-SGSSDntIRlwdi~~  389 (499)
T KOG0281|consen  322 AVNVVDFD--------DKYIVSASGDRTIKVWSTSTCEFVRTLNGHK-RGIACLQY--RDRLVV-SGSSDNTIRLWDIEC  389 (499)
T ss_pred             heeeeccc--------cceEEEecCCceEEEEeccceeeehhhhccc-ccceehhc--cCeEEE-ecCCCceEEEEeccc
Confidence            88888885        5699999999999999999998887776653 55555554  345555 444333    34456


Q ss_pred             eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649          155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  234 (250)
                      ..+++.++||+.-|.|+.|.     .+.+++|+.||+|++||+..+.........-++.....|++.|..+.|   |...
T Consensus       390 G~cLRvLeGHEeLvRciRFd-----~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF---D~fq  461 (499)
T KOG0281|consen  390 GACLRVLEGHEELVRCIRFD-----NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF---DEFQ  461 (499)
T ss_pred             cHHHHHHhchHHhhhheeec-----CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee---cceE
Confidence            67889999999999999996     478999999999999999987654333333456667789999999998   4557


Q ss_pred             EEEeeCCceEEEEeC
Q 025649          235 LVVCDTSKVVKVYSI  249 (250)
Q Consensus       235 l~s~~~d~~i~vw~~  249 (250)
                      +++++.|.+|.+||+
T Consensus       462 IvsssHddtILiWdF  476 (499)
T KOG0281|consen  462 IISSSHDDTILIWDF  476 (499)
T ss_pred             EEeccCCCeEEEEEc
Confidence            999999999999996

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=2.5e-29  Score=183.71  Aligned_cols=234  Identities=18%  Similarity=0.189  Sum_probs=181.5

Q ss_pred             cEEEEcccce--e--------eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc-cceecCCCCCCCC
Q 025649            2 WQIIDIRQHC--L--------YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN-KIVNFGLPENNGN   70 (250)
Q Consensus         2 i~iwd~~~~~--~--------~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~   70 (250)
                      |.|||..+..  .        -.+|. ||...=.+|+|++.....|++++.|++|++||+...... ..+       ...
T Consensus       149 v~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~-------~p~  220 (422)
T KOG0264|consen  149 VYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV-------DPK  220 (422)
T ss_pred             EEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeEeeccCCCcEEEEeccccccCCccc-------cce
Confidence            6789876321  1        12788 999988899999998889999999999999999754321 001       011


Q ss_pred             CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc-eeEeeccCCCCCCccceeecccceeEEEeeeeee
Q 025649           71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE-LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ  149 (250)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (250)
                      .....|.+.|..++|++     .+..++++++.|+.+.|||++++ .........+...+.|++|+|-+..+++.++.|.
T Consensus       221 ~~~~~h~~~VeDV~~h~-----~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~  295 (422)
T KOG0264|consen  221 TIFSGHEDVVEDVAWHP-----LHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADK  295 (422)
T ss_pred             EEeecCCcceehhhccc-----cchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCC
Confidence            22233788999999998     57889999999999999999963 2233334445689999999998777765555444


Q ss_pred             cc-----CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee-----cccccceeeeeeccC
Q 025649          150 SG-----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ-----TSINNDLLIKNINLN  219 (250)
Q Consensus       150 ~~-----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~  219 (250)
                      +.     ++-.+++.++.+|+..|.+|.|+|  .....|++++.|+++.+||+..-...+     ..+.++++....+|.
T Consensus       296 tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP--h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~  373 (422)
T KOG0264|consen  296 TVALWDLRNLNKPLHTFEGHEDEVFQVEWSP--HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT  373 (422)
T ss_pred             cEEEeechhcccCceeccCCCcceEEEEeCC--CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcc
Confidence            32     122337889999999999999996  556799999999999999998744332     355678888889999


Q ss_pred             CceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          220 KKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       220 ~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ..|..+.|+|.+...|++.+.|+.+.||++.
T Consensus       374 ~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  374 AKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            9999999999999999999999999999863

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=4.4e-29  Score=170.89  Aligned_cols=211  Identities=16%  Similarity=0.207  Sum_probs=177.0

Q ss_pred             CcEEEEcccceeeee--eccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHCLYKS--LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~~~~~--l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      ++++|+++..+....  .+ +|.+.|-.++|+|..+.+|++++.|.+|++||++.+++...+...              .
T Consensus        43 tv~v~n~e~~r~~~~~~~~-gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~--------------~  107 (313)
T KOG1407|consen   43 TVSVWNLERDRFRKELVYR-GHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK--------------G  107 (313)
T ss_pred             ceEEEEecchhhhhhhccc-CCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc--------------C
Confidence            578999987766554  45 899999999999988779999999999999999999998888733              3


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeeccCeee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRL  155 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  155 (250)
                      .-..+.|+|      ++++++++..|..|.+.|.++.+.....+..  ..+..+.|+.++.+++.   .|...+..-..+
T Consensus       108 eni~i~wsp------~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL  179 (313)
T KOG1407|consen  108 ENINITWSP------DGEYIAVGNKDDRITFIDARTYKIVNEEQFK--FEVNEISWNNSNDLFFLTNGLGCVEILSYPSL  179 (313)
T ss_pred             cceEEEEcC------CCCEEEEecCcccEEEEEecccceeehhccc--ceeeeeeecCCCCEEEEecCCceEEEEecccc
Confidence            345678998      9999999999999999999988777665554  56777888876666653   244555566788


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                      +++..+++|.....|+.|+   |+|++||+|+.|..+.+||+...         -+.+.+.-+.-+|..+.|+- ||++|
T Consensus       180 kpv~si~AH~snCicI~f~---p~GryfA~GsADAlvSLWD~~EL---------iC~R~isRldwpVRTlSFS~-dg~~l  246 (313)
T KOG1407|consen  180 KPVQSIKAHPSNCICIEFD---PDGRYFATGSADALVSLWDVDEL---------ICERCISRLDWPVRTLSFSH-DGRML  246 (313)
T ss_pred             ccccccccCCcceEEEEEC---CCCceEeeccccceeeccChhHh---------hhheeeccccCceEEEEecc-Cccee
Confidence            8899999999999999999   89999999999999999999997         45566778888999999996 99999


Q ss_pred             EEeeCCceEEEE
Q 025649          236 VVCDTSKVVKVY  247 (250)
Q Consensus       236 ~s~~~d~~i~vw  247 (250)
                      |+||.|..|-|=
T Consensus       247 ASaSEDh~IDIA  258 (313)
T KOG1407|consen  247 ASASEDHFIDIA  258 (313)
T ss_pred             eccCccceEEeE
Confidence            999999888653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=3.1e-28  Score=180.90  Aligned_cols=213  Identities=19%  Similarity=0.275  Sum_probs=175.9

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+.+++.+..+. .|...|.++.|+|++. ++++++.||.|++||+++++....+. .            +...+
T Consensus        74 ~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~-~------------~~~~i  138 (289)
T cd00200          74 TIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLR-G------------HTDWV  138 (289)
T ss_pred             eEEEEEcCcccceEEEe-ccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEec-c------------CCCcE
Confidence            47899999988889999 9999999999999987 88888889999999999877766665 2            46789


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee---eeeccCeeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI---LDQSGGKRLHL  157 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  157 (250)
                      .++.++|      ++.++++++.|+.|++||+++++....+..+ ...+.++.++|+++.+++.+.   ...++....+.
T Consensus       139 ~~~~~~~------~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~  211 (289)
T cd00200         139 NSVAFSP------DGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC  211 (289)
T ss_pred             EEEEEcC------cCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECCCcCEEEEecCCCcEEEEECCCCce
Confidence            9999998      7888888888999999999987766655533 458999999999977774332   11222333455


Q ss_pred             eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE
Q 025649          158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV  237 (250)
Q Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  237 (250)
                      +..+..|...+.++.|+   +++.++++++.||.|++||+.++         .....+..|...+.+++|+| ++.+|++
T Consensus       212 ~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~i~i~~~~~~---------~~~~~~~~~~~~i~~~~~~~-~~~~l~~  278 (289)
T cd00200         212 LGTLRGHENGVNSVAFS---PDGYLLASGSEDGTIRVWDLRTG---------ECVQTLSGHTNSVTSLAWSP-DGKRLAS  278 (289)
T ss_pred             ecchhhcCCceEEEEEc---CCCcEEEEEcCCCcEEEEEcCCc---------eeEEEccccCCcEEEEEECC-CCCEEEE
Confidence            66777888899999999   78889998888999999999986         45556668888999999997 7889999


Q ss_pred             eeCCceEEEEe
Q 025649          238 CDTSKVVKVYS  248 (250)
Q Consensus       238 ~~~d~~i~vw~  248 (250)
                      ++.||.|++|+
T Consensus       279 ~~~d~~i~iw~  289 (289)
T cd00200         279 GSADGTIRIWD  289 (289)
T ss_pred             ecCCCeEEecC
Confidence            99999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.3e-28  Score=166.44  Aligned_cols=207  Identities=22%  Similarity=0.220  Sum_probs=165.1

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC--CCccceecCCCCCCCCCCcccCCCc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      |.+||+++|+.+++++ +|.+.|+.++|+.+.. .+++|+.|.++++||-++.  ++++.+..             ..+.
T Consensus        83 v~vwDV~TGkv~Rr~r-gH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQilde-------------a~D~  147 (307)
T KOG0316|consen   83 VQVWDVNTGKVDRRFR-GHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDE-------------AKDG  147 (307)
T ss_pred             EEEEEcccCeeeeecc-cccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhh-------------hcCc
Confidence            6899999999999999 9999999999999998 9999999999999998754  56666653             2577


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----cCeee
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRL  155 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  155 (250)
                      |.++.+.        +..|++|+.||+++.||++.|+.......   .+++++.|+++++..+ ++..+..    +....
T Consensus       148 V~Si~v~--------~heIvaGS~DGtvRtydiR~G~l~sDy~g---~pit~vs~s~d~nc~L-a~~l~stlrLlDk~tG  215 (307)
T KOG0316|consen  148 VSSIDVA--------EHEIVAGSVDGTVRTYDIRKGTLSSDYFG---HPITSVSFSKDGNCSL-ASSLDSTLRLLDKETG  215 (307)
T ss_pred             eeEEEec--------ccEEEeeccCCcEEEEEeecceeehhhcC---CcceeEEecCCCCEEE-Eeeccceeeecccchh
Confidence            8888875        68899999999999999999887655444   5899999999999888 4544443    45677


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCc-eeEEEecCCCCCe
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK-VNWLCTTPTESEN  234 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~  234 (250)
                      +.+..+++|.+.-..+..+ +......+++||+||.|++||+...         ..+..+..+... +.++.++|.... 
T Consensus       216 klL~sYkGhkn~eykldc~-l~qsdthV~sgSEDG~Vy~wdLvd~---------~~~sk~~~~~~v~v~dl~~hp~~~~-  284 (307)
T KOG0316|consen  216 KLLKSYKGHKNMEYKLDCC-LNQSDTHVFSGSEDGKVYFWDLVDE---------TQISKLSVVSTVIVTDLSCHPTMDD-  284 (307)
T ss_pred             HHHHHhcccccceeeeeee-ecccceeEEeccCCceEEEEEeccc---------eeeeeeccCCceeEEeeecccCccc-
Confidence            8889999998866555443 1155689999999999999999997         555666666666 889999996655 


Q ss_pred             EEEeeCCceEEEE
Q 025649          235 LVVCDTSKVVKVY  247 (250)
Q Consensus       235 l~s~~~d~~i~vw  247 (250)
                      |+++... .+..|
T Consensus       285 f~~A~~~-~~~~~  296 (307)
T KOG0316|consen  285 FITATGH-GDLFW  296 (307)
T ss_pred             eeEecCC-ceece
Confidence            4444423 34444

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=7.4e-29  Score=177.79  Aligned_cols=225  Identities=19%  Similarity=0.149  Sum_probs=177.5

Q ss_pred             CcEEEEccccee----eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC--Cccceec----------CC
Q 025649            1 MWQIIDIRQHCL----YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR--PNKIVNF----------GL   64 (250)
Q Consensus         1 ti~iwd~~~~~~----~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~----------~~   64 (250)
                      |+++|-++.++.    +..-+ ||...|.+++..++|. .+++||.|..|++|+..+..  .......          ..
T Consensus       170 tl~Lw~~~~~~~~~~~~~~~~-GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~  247 (423)
T KOG0313|consen  170 TLRLWKWNVGENKVKALKVCR-GHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG  247 (423)
T ss_pred             eEEEEEecCchhhhhHHhHhc-ccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence            578888876653    33445 9999999999999999 89999999999999943211  1111100          00


Q ss_pred             CCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE-
Q 025649           65 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE-  143 (250)
Q Consensus        65 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  143 (250)
                      ....+...+..|...|.++.|++       ...+++++.|.+|+.||+.++.....+...  ....++.++|..+++++ 
T Consensus       248 ~~r~P~vtl~GHt~~Vs~V~w~d-------~~v~yS~SwDHTIk~WDletg~~~~~~~~~--ksl~~i~~~~~~~Ll~~g  318 (423)
T KOG0313|consen  248 GTRTPLVTLEGHTEPVSSVVWSD-------ATVIYSVSWDHTIKVWDLETGGLKSTLTTN--KSLNCISYSPLSKLLASG  318 (423)
T ss_pred             cccCceEEecccccceeeEEEcC-------CCceEeecccceEEEEEeecccceeeeecC--cceeEeecccccceeeec
Confidence            01112244566999999999994       788999999999999999999888777665  78899999999988884 


Q ss_pred             -----eeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc
Q 025649          144 -----MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL  218 (250)
Q Consensus       144 -----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  218 (250)
                           ...+|.+.....-..++|.+|++.|.++.|+|  .+..+|++|+.|+++++||+++..        .++..+.+|
T Consensus       319 ssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp--~~~~~~~S~S~D~t~klWDvRS~k--------~plydI~~h  388 (423)
T KOG0313|consen  319 SSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP--TNEFQLVSGSYDNTVKLWDVRSTK--------APLYDIAGH  388 (423)
T ss_pred             CCCCceeecCCCCCCCceeEEeeecchhhhhheecCC--CCceEEEEEecCCeEEEEEeccCC--------CcceeeccC
Confidence                 33455555555556678999999999999996  456789999999999999999973        367788999


Q ss_pred             CCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          219 NKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      ...|.++.|.  ++..|++|+.|.+|+++.
T Consensus       389 ~DKvl~vdW~--~~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  389 NDKVLSVDWN--EGGLIVSGGADNKLRIFK  416 (423)
T ss_pred             CceEEEEecc--CCceEEeccCcceEEEec
Confidence            9999999997  677899999999999986

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=7.2e-28  Score=188.44  Aligned_cols=209  Identities=13%  Similarity=0.127  Sum_probs=148.0

Q ss_pred             eeccCCCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649           15 SLRAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK   93 (250)
Q Consensus        15 ~l~~~h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (250)
                      .+. +|.+.|.+++|+| ++. +|++|+.|++|++||+.++.......      .....+..|...|.+++|+|      
T Consensus        70 ~l~-GH~~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~~------~~l~~L~gH~~~V~~l~f~P------  135 (493)
T PTZ00421         70 ILL-GQEGPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQNIS------DPIVHLQGHTKKVGIVSFHP------  135 (493)
T ss_pred             eEe-CCCCCEEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCccccccC------cceEEecCCCCcEEEEEeCc------
Confidence            467 9999999999999 677 89999999999999997653211100      00011123678999999998      


Q ss_pred             C-CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeeeccccCcccc-E
Q 025649           94 T-NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGGHTAA-A  168 (250)
Q Consensus        94 ~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~-v  168 (250)
                      + +++|++++.|++|++||+++++....+..+ ...+.+++|+|+|.++++.+   ....++.+..+.+..+.+|.+. +
T Consensus       136 ~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h-~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~  214 (493)
T PTZ00421        136 SAMNVLASAGADMVVNVWDVERGKAVEVIKCH-SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKS  214 (493)
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC-CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcc
Confidence            5 479999999999999999998877666543 46799999999999998521   2222333444456677788764 3


Q ss_pred             EEEEeecCCCCCcEEEEee----CCCeEEEEecCCCcceecccccceeeeeeccC-CceeEEEecCCCCCeEEEee-CCc
Q 025649          169 SCVAFSMFGERGKYLISGG----NDKLVKVWDCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVCD-TSK  242 (250)
Q Consensus       169 ~~~~~~p~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~-~d~  242 (250)
                      ..+.|.   +++..+++++    .|+.|++||+++..        ..+.....+. ..+....|++ ++.+|++++ .|+
T Consensus       215 ~~~~w~---~~~~~ivt~G~s~s~Dr~VklWDlr~~~--------~p~~~~~~d~~~~~~~~~~d~-d~~~L~lggkgDg  282 (493)
T PTZ00421        215 QRCLWA---KRKDLIITLGCSKSQQRQIMLWDTRKMA--------SPYSTVDLDQSSALFIPFFDE-DTNLLYIGSKGEG  282 (493)
T ss_pred             eEEEEc---CCCCeEEEEecCCCCCCeEEEEeCCCCC--------CceeEeccCCCCceEEEEEcC-CCCEEEEEEeCCC
Confidence            467788   6666666543    58999999998763        2222222233 3344445665 888888877 599


Q ss_pred             eEEEEeCC
Q 025649          243 VVKVYSIS  250 (250)
Q Consensus       243 ~i~vw~~~  250 (250)
                      .|++||+.
T Consensus       283 ~Iriwdl~  290 (493)
T PTZ00421        283 NIRCFELM  290 (493)
T ss_pred             eEEEEEee
Confidence            99999974

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=7.1e-30  Score=188.02  Aligned_cols=215  Identities=13%  Similarity=0.160  Sum_probs=175.6

Q ss_pred             CcEEEEccc-ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~-~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      .|+||++.. +++++++. +|..+|.+++|+++|. .|+|+|.|+.|++||+++|+++..+..+              ..
T Consensus       238 ~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~-~fLS~sfD~~lKlwDtETG~~~~~f~~~--------------~~  301 (503)
T KOG0282|consen  238 LVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGT-SFLSASFDRFLKLWDTETGQVLSRFHLD--------------KV  301 (503)
T ss_pred             eEEEEEEecCcceehhhh-cchhhhhhhhccccCC-eeeeeecceeeeeeccccceEEEEEecC--------------CC
Confidence            378999886 89999999 9999999999999999 7999999999999999999999999855              66


Q ss_pred             eeEEecCCCcccCCCC-CEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccC
Q 025649           80 VHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGG  152 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  152 (250)
                      ++++.|.|      ++ +.+++|+.|+.|+.||+++++.+.....+. ..+..+.|-++|+++++      +..|+....
T Consensus       302 ~~cvkf~p------d~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL-g~i~~i~F~~~g~rFissSDdks~riWe~~~~  374 (503)
T KOG0282|consen  302 PTCVKFHP------DNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL-GAILDITFVDEGRRFISSSDDKSVRIWENRIP  374 (503)
T ss_pred             ceeeecCC------CCCcEEEEecCCCcEEEEeccchHHHHHHHhhh-hheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence            89999999      55 899999999999999999998766655543 78899999999999985      334444444


Q ss_pred             eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCc--eeEEEecCC
Q 025649          153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK--VNWLCTTPT  230 (250)
Q Consensus       153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~  230 (250)
                      ...+.+.....|.  ..|+..+   |++++++.-+.|+.|.+|.+......      .....+.+|...  -..+.|+| 
T Consensus       375 v~ik~i~~~~~hs--mP~~~~~---P~~~~~~aQs~dN~i~ifs~~~~~r~------nkkK~feGh~vaGys~~v~fSp-  442 (503)
T KOG0282|consen  375 VPIKNIADPEMHT--MPCLTLH---PNGKWFAAQSMDNYIAIFSTVPPFRL------NKKKRFEGHSVAGYSCQVDFSP-  442 (503)
T ss_pred             ccchhhcchhhcc--CcceecC---CCCCeehhhccCceEEEEeccccccc------CHhhhhcceeccCceeeEEEcC-
Confidence            4444333444444  4688888   89999999999999999997765433      333456777654  44568887 


Q ss_pred             CCCeEEEeeCCceEEEEeCC
Q 025649          231 ESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       231 ~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ||.+|++|+.||.+.+||.+
T Consensus       443 DG~~l~SGdsdG~v~~wdwk  462 (503)
T KOG0282|consen  443 DGRTLCSGDSDGKVNFWDWK  462 (503)
T ss_pred             CCCeEEeecCCccEEEeech
Confidence            99999999999999999963

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-28  Score=168.96  Aligned_cols=221  Identities=14%  Similarity=0.112  Sum_probs=177.7

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      ++.||=-.+|+.+.++. ||++.|.|+..+-+.+ .++||+.|.++++||+++|+.+..++.+              ..|
T Consensus        33 ~~~vw~s~nGerlGty~-GHtGavW~~Did~~s~-~liTGSAD~t~kLWDv~tGk~la~~k~~--------------~~V   96 (327)
T KOG0643|consen   33 TPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDSK-HLITGSADQTAKLWDVETGKQLATWKTN--------------SPV   96 (327)
T ss_pred             CceEEEecCCceeeeec-CCCceEEEEEecCCcc-eeeeccccceeEEEEcCCCcEEEEeecC--------------Cee
Confidence            45788777899999999 9999999999999999 8999999999999999999999999844              789


Q ss_pred             eEEecCCCcccCCCCCEEEEEe-----CCCeEEEEeCCC-------ceeEeeccCCCCCCccceeecccceeEEE---ee
Q 025649           81 HAIAIPDADMLDKTNKICVVAK-----GDGVVDVINIES-------ELNISRSKSTTKPLKGSQSTSKVNIRDAE---ME  145 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~-----~d~~i~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  145 (250)
                      ..+.|++      ++++++...     ..+.|.++|++.       ..+...+..+ ...+..+.|.|-++.+++   .|
T Consensus        97 k~~~F~~------~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-~skit~a~Wg~l~~~ii~Ghe~G  169 (327)
T KOG0643|consen   97 KRVDFSF------GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-DSKITSALWGPLGETIIAGHEDG  169 (327)
T ss_pred             EEEeecc------CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-ccceeeeeecccCCEEEEecCCC
Confidence            9999998      888887774     457899999984       2223333333 378889999999999984   22


Q ss_pred             eeeeccCee-eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecc------------------
Q 025649          146 ILDQSGGKR-LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS------------------  206 (250)
Q Consensus       146 ~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------------------  206 (250)
                      ....++.+. .+.+...+.|...|+.+.++   ++..+++++|.|.+-++||..+.....+.                  
T Consensus       170 ~is~~da~~g~~~v~s~~~h~~~Ind~q~s---~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~V  246 (327)
T KOG0643|consen  170 SISIYDARTGKELVDSDEEHSSKINDLQFS---RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHV  246 (327)
T ss_pred             cEEEEEcccCceeeechhhhcccccccccc---CCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceE
Confidence            233333332 34455667788899999999   89999999999999999999887654310                  


Q ss_pred             ----------------------------cccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          207 ----------------------------INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       207 ----------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                                                  --.+.+...++|-++|++++++| +|+..++|+.||.|++.-
T Consensus       247 ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  247 ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             EecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEE
Confidence                                        00233456789999999999998 999999999999999864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.7e-28  Score=186.48  Aligned_cols=223  Identities=14%  Similarity=0.217  Sum_probs=185.0

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |++|+-.+++...... .+.+.|+++.|+++|. +|+.|..+|.|.|||..+.+.+..+..+            |...|-
T Consensus       199 vylW~~~s~~v~~l~~-~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~~~~~------------h~~rvg  264 (484)
T KOG0305|consen  199 VYLWSASSGSVTELCS-FGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRTLRGS------------HASRVG  264 (484)
T ss_pred             EEEEecCCCceEEeEe-cCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhccccccccCC------------cCceeE
Confidence            7899999998776666 5589999999999999 8999999999999999998888888764            678899


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeee
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLD  158 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  158 (250)
                      +++|.        +..+.+|+.|+.|..+|++..+........+...+..++|++|+.++++-+   ....++....+++
T Consensus       265 ~laW~--------~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~  336 (484)
T KOG0305|consen  265 SLAWN--------SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK  336 (484)
T ss_pred             EEecc--------CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence            99996        578999999999999999997776665555678999999999999999421   2233344555667


Q ss_pred             ccccCccccEEEEEeecCCCCCcEEEEee--CCCeEEEEecCCCcceec-------------------------------
Q 025649          159 YSVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQGVQT-------------------------------  205 (250)
Q Consensus       159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~-------------------------------  205 (250)
                      ..+..|.+.|.+++|+|+.  ..+||+|+  .|++|++||..++..+..                               
T Consensus       337 ~~~~~H~aAVKA~awcP~q--~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~  414 (484)
T KOG0305|consen  337 FTFTEHTAAVKALAWCPWQ--SGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQIT  414 (484)
T ss_pred             EEEeccceeeeEeeeCCCc--cCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence            7889999999999999854  46888864  699999999998865531                               


Q ss_pred             ---ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          206 ---SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       206 ---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                         ......+..+.+|...|..++++| ||+.+++|+.|.++++|++
T Consensus       415 lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  415 LWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWNL  460 (484)
T ss_pred             EEeccccceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEeccc
Confidence               112234567789999999999998 8999999999999999985

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.3e-27  Score=177.60  Aligned_cols=215  Identities=20%  Similarity=0.268  Sum_probs=176.4

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+.+++....+. +|...+..+.|+|+++ +|++++.||.|++||+.+++.+..+..             +...+
T Consensus        32 ~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~~~~~~~-------------~~~~i   96 (289)
T cd00200          32 TIKVWDLETGELLRTLK-GHTGPVRDVAASADGT-YLASGSSDKTIRLWDLETGECVRTLTG-------------HTSYV   96 (289)
T ss_pred             EEEEEEeeCCCcEEEEe-cCCcceeEEEECCCCC-EEEEEcCCCeEEEEEcCcccceEEEec-------------cCCcE
Confidence            37899999988888888 9999999999999998 899999999999999998777666652             35689


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHL  157 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  157 (250)
                      .++.++|      +++++++++.|+.|++||+++++....+.. +...+.++.++|++.+++...   ....++....+.
T Consensus        97 ~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~  169 (289)
T cd00200          97 SSVAFSP------DGRILSSSSRDKTIKVWDVETGKCLTTLRG-HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC  169 (289)
T ss_pred             EEEEEcC------CCCEEEEecCCCeEEEEECCCcEEEEEecc-CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence            9999998      788888888899999999998777666553 346799999999988877422   112223333455


Q ss_pred             eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE
Q 025649          158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV  237 (250)
Q Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  237 (250)
                      +..+..|...+.++.|+   |+++.+++++.|+.|++||++.+         ..+..+..|...+.++.|+| ++.++++
T Consensus       170 ~~~~~~~~~~i~~~~~~---~~~~~l~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~-~~~~~~~  236 (289)
T cd00200         170 VATLTGHTGEVNSVAFS---PDGEKLLSSSSDGTIKLWDLSTG---------KCLGTLRGHENGVNSVAFSP-DGYLLAS  236 (289)
T ss_pred             ceeEecCccccceEEEC---CCcCEEEEecCCCcEEEEECCCC---------ceecchhhcCCceEEEEEcC-CCcEEEE
Confidence            66677888899999999   88889999999999999999986         45555568888999999998 6888888


Q ss_pred             eeCCceEEEEeCC
Q 025649          238 CDTSKVVKVYSIS  250 (250)
Q Consensus       238 ~~~d~~i~vw~~~  250 (250)
                      ++.||.|++||+.
T Consensus       237 ~~~~~~i~i~~~~  249 (289)
T cd00200         237 GSEDGTIRVWDLR  249 (289)
T ss_pred             EcCCCcEEEEEcC
Confidence            8889999999973

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=1.5e-27  Score=170.30  Aligned_cols=212  Identities=13%  Similarity=0.145  Sum_probs=169.0

Q ss_pred             EEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeE
Q 025649            3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA   82 (250)
Q Consensus         3 ~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   82 (250)
                      .||++.+++....+. +|.+.|+++.|+.+|. +||||+.+|.|+||+..++.....+...             -..+.-
T Consensus        89 flW~~~~ge~~~elt-gHKDSVt~~~Fshdgt-lLATGdmsG~v~v~~~stg~~~~~~~~e-------------~~dieW  153 (399)
T KOG0296|consen   89 FLWDISTGEFAGELT-GHKDSVTCCSFSHDGT-LLATGDMSGKVLVFKVSTGGEQWKLDQE-------------VEDIEW  153 (399)
T ss_pred             EEEEccCCcceeEec-CCCCceEEEEEccCce-EEEecCCCccEEEEEcccCceEEEeecc-------------cCceEE
Confidence            689999999999999 9999999999999999 9999999999999999999887777522             356777


Q ss_pred             EecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCee--
Q 025649           83 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKR--  154 (250)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--  154 (250)
                      +.|+|      .+.+|++|+.||.+-.|.+.++...+.+.. +...+.+-.|.|+|+.+++      +..|+.....+  
T Consensus       154 l~WHp------~a~illAG~~DGsvWmw~ip~~~~~kv~~G-h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~  226 (399)
T KOG0296|consen  154 LKWHP------RAHILLAGSTDGSVWMWQIPSQALCKVMSG-HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH  226 (399)
T ss_pred             EEecc------cccEEEeecCCCcEEEEECCCcceeeEecC-CCCCcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence            88998      899999999999999999988644444444 4577788888888887763      11121110000  


Q ss_pred             --------------------------------------ee----------------------------------------
Q 025649          155 --------------------------------------LH----------------------------------------  156 (250)
Q Consensus       155 --------------------------------------~~----------------------------------------  156 (250)
                                                            .+                                        
T Consensus       227 ~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v  306 (399)
T KOG0296|consen  227 KITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV  306 (399)
T ss_pred             EecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc
Confidence                                                  00                                        


Q ss_pred             ------------eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeE
Q 025649          157 ------------LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW  224 (250)
Q Consensus       157 ------------~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (250)
                                  .++..-.|...|..+.|-   + ..+|++++.+|.|+.||.+++         .++..+.+|...|..
T Consensus       307 dG~i~iyD~a~~~~R~~c~he~~V~~l~w~---~-t~~l~t~c~~g~v~~wDaRtG---------~l~~~y~GH~~~Il~  373 (399)
T KOG0296|consen  307 DGTIAIYDLAASTLRHICEHEDGVTKLKWL---N-TDYLLTACANGKVRQWDARTG---------QLKFTYTGHQMGILD  373 (399)
T ss_pred             cceEEEEecccchhheeccCCCceEEEEEc---C-cchheeeccCceEEeeecccc---------ceEEEEecCchheeE
Confidence                        001222466778888887   5 678899999999999999998         788899999999999


Q ss_pred             EEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          225 LCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       225 ~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ++.+| +.++++|+|.|++.+||+++
T Consensus       374 f~ls~-~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  374 FALSP-QKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEcC-CCcEEEEecCCCeEEEEecC
Confidence            99998 89999999999999999864

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.5e-28  Score=179.34  Aligned_cols=209  Identities=19%  Similarity=0.288  Sum_probs=172.1

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |+|+|+++...++.++ +|+.+|..+.|+|++..+|++|++|+.+++||+.+...+..+. +            |.+.|.
T Consensus        92 V~vfD~k~r~iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~------------htDYVR  157 (487)
T KOG0310|consen   92 VKVFDMKSRVILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-G------------HTDYVR  157 (487)
T ss_pred             EEEeccccHHHHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-C------------CcceeE
Confidence            7899987777888899 9999999999999987799999999999999998877533343 3            789999


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-----eeeeccCeeee
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-----ILDQSGGKRLH  156 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  156 (250)
                      +.+++|     .++..+++|++||.|++||++... .......+..++..+.+-|.|..+++.|     .||...+.  +
T Consensus       158 ~g~~~~-----~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--q  229 (487)
T KOG0310|consen  158 CGDISP-----ANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--Q  229 (487)
T ss_pred             eecccc-----CCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--e
Confidence            999999     467899999999999999999864 2333334458999999999999999744     45554333  3


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      .+..+..|...|+|+.+.   .++..|++|+-|+.+++||+.+.          .+.......++|.+++.+| +++.++
T Consensus       230 ll~~~~~H~KtVTcL~l~---s~~~rLlS~sLD~~VKVfd~t~~----------Kvv~s~~~~~pvLsiavs~-dd~t~v  295 (487)
T KOG0310|consen  230 LLTSMFNHNKTVTCLRLA---SDSTRLLSGSLDRHVKVFDTTNY----------KVVHSWKYPGPVLSIAVSP-DDQTVV  295 (487)
T ss_pred             ehhhhhcccceEEEEEee---cCCceEeecccccceEEEEccce----------EEEEeeecccceeeEEecC-CCceEE
Confidence            345555699999999999   89999999999999999997774          3345567889999999998 788899


Q ss_pred             EeeCCceEEE
Q 025649          237 VCDTSKVVKV  246 (250)
Q Consensus       237 s~~~d~~i~v  246 (250)
                      .|..||.+.+
T Consensus       296 iGmsnGlv~~  305 (487)
T KOG0310|consen  296 IGMSNGLVSI  305 (487)
T ss_pred             Eecccceeee
Confidence            9999997754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=9.3e-29  Score=193.07  Aligned_cols=201  Identities=13%  Similarity=0.165  Sum_probs=162.0

Q ss_pred             eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649           11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM   90 (250)
Q Consensus        11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   90 (250)
                      ++++.|+ ||.+.|.+|.||.++  +|+++|.|.+||||++...++++.|.              |++.|+|++|+|   
T Consensus       360 kP~~ef~-GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~--------------HndfVTcVaFnP---  419 (712)
T KOG0283|consen  360 KPFCEFK-GHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS--------------HNDFVTCVAFNP---  419 (712)
T ss_pred             cchhhhh-ccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe--------------cCCeeEEEEecc---
Confidence            5667888 999999999999987  79999999999999999999999998              899999999999   


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc----Ceeeeeec--cc---
Q 025649           91 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDY--SV---  161 (250)
Q Consensus        91 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~---  161 (250)
                        .|.+++++|+-|+.||||++...+........  ..|++++|.|||+..+ +|.+++..    ....+...  .+   
T Consensus       420 --vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~av-IGt~~G~C~fY~t~~lk~~~~~~I~~~  494 (712)
T KOG0283|consen  420 --VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKGAV-IGTFNGYCRFYDTEGLKLVSDFHIRLH  494 (712)
T ss_pred             --cCCCcEeecccccceEEeecCcCeeEeehhhh--hhheeEEeccCCceEE-EEEeccEEEEEEccCCeEEEeeeEeec
Confidence              69999999999999999999987766655554  7899999999999988 77766652    11111111  11   


Q ss_pred             ----cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCc--eeEEEecCCCCCeE
Q 025649          162 ----GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK--VNWLCTTPTESENL  235 (250)
Q Consensus       162 ----~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l  235 (250)
                          ..|. .|+.+.|.|-.++  .++..+.|..|+|+|.+..         .++..++++...  -....|.+ ||++|
T Consensus       495 ~~Kk~~~~-rITG~Q~~p~~~~--~vLVTSnDSrIRI~d~~~~---------~lv~KfKG~~n~~SQ~~Asfs~-Dgk~I  561 (712)
T KOG0283|consen  495 NKKKKQGK-RITGLQFFPGDPD--EVLVTSNDSRIRIYDGRDK---------DLVHKFKGFRNTSSQISASFSS-DGKHI  561 (712)
T ss_pred             cCccccCc-eeeeeEecCCCCC--eEEEecCCCceEEEeccch---------hhhhhhcccccCCcceeeeEcc-CCCEE
Confidence                1233 7999999964433  5777778999999999876         555666665443  33456776 99999


Q ss_pred             EEeeCCceEEEEeC
Q 025649          236 VVCDTSKVVKVYSI  249 (250)
Q Consensus       236 ~s~~~d~~i~vw~~  249 (250)
                      ++++.|..|++|++
T Consensus       562 Vs~seDs~VYiW~~  575 (712)
T KOG0283|consen  562 VSASEDSWVYIWKN  575 (712)
T ss_pred             EEeecCceEEEEeC
Confidence            99999999999986

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.2e-27  Score=185.23  Aligned_cols=222  Identities=14%  Similarity=0.173  Sum_probs=181.3

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |+|||..++-+..+|. .|++.|+.+.|+..+. .+++.|.||+|+.||+...+..+++..+            .+....
T Consensus       374 VKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P------------~p~Qfs  439 (893)
T KOG0291|consen  374 VKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSP------------EPIQFS  439 (893)
T ss_pred             EEEEeccCceEEEEec-cCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCC------------Cceeee
Confidence            7999999999999999 9999999999999999 8999999999999999999999999866            466778


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCC-eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCe-----ee
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDG-VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK-----RL  155 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  155 (250)
                      +++..|      .|.++.+|+.|. .|.+|++++|+.+..+..++ +++.+++|+|.|..++ .++||.++..     ..
T Consensus       440 cvavD~------sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE-gPVs~l~f~~~~~~La-S~SWDkTVRiW~if~s~  511 (893)
T KOG0291|consen  440 CVAVDP------SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE-GPVSGLSFSPDGSLLA-SGSWDKTVRIWDIFSSS  511 (893)
T ss_pred             EEEEcC------CCCEEEeeccceEEEEEEEeecCeeeehhcCCC-CcceeeEEccccCeEE-eccccceEEEEEeeccC
Confidence            888888      899999998876 69999999999988887775 8999999999999998 7777765431     11


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccc-----------cceeeeeeccCCceeE
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN-----------NDLLIKNINLNKKVNW  224 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~  224 (250)
                      ....+++ +...+..++|+   |+|+.++++..||.|.+||.+...+...+.+           ..............+.
T Consensus       512 ~~vEtl~-i~sdvl~vsfr---PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftt  587 (893)
T KOG0291|consen  512 GTVETLE-IRSDVLAVSFR---PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTT  587 (893)
T ss_pred             ceeeeEe-eccceeEEEEc---CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEE
Confidence            1122332 45678999999   8999999999999999999988765532111           1111112233467899


Q ss_pred             EEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          225 LCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       225 ~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +++++ ||..|++|+..+.|++|+++
T Consensus       588 i~ySa-DG~~IlAgG~sn~iCiY~v~  612 (893)
T KOG0291|consen  588 ICYSA-DGKCILAGGESNSICIYDVP  612 (893)
T ss_pred             EEEcC-CCCEEEecCCcccEEEEECc
Confidence            99997 99999999999999999974

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.3e-28  Score=165.06  Aligned_cols=217  Identities=15%  Similarity=0.161  Sum_probs=170.2

Q ss_pred             cEEEEcccceeeeeec-cCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCc
Q 025649            2 WQIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +.|-++...+-+..+. ..-.+.+..++|++...+.+++++.||++++||+.. ..++..++.             |...
T Consensus        40 L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE-------------H~~E  106 (311)
T KOG0277|consen   40 LFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE-------------HKRE  106 (311)
T ss_pred             EEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh-------------hhhh
Confidence            4455554333333332 125678999999999877999999999999999653 356677763             5789


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccc-eeEEE------eeeeeeccC
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN-IRDAE------MEILDQSGG  152 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~  152 (250)
                      |.++.|++     .++..+++++.|++|++|+..-++.+.++..+ ...|...+|+|.- +.+++      ...||....
T Consensus       107 V~Svdwn~-----~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh-~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~  180 (311)
T KOG0277|consen  107 VYSVDWNT-----VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH-NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP  180 (311)
T ss_pred             eEEecccc-----ccceeEEeeccCCceEeecCCCCcceEeecCC-ccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence            99999998     57888899999999999999998888887764 5889999999964 44443      233443322


Q ss_pred             eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649          153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES  232 (250)
Q Consensus       153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (250)
                        .+.+ .+..|...|.|+.|+.  .+.+.++||+.|+.|+.||+++..        .++..+.+|.-.|..+.|+|...
T Consensus       181 --gk~~-~i~ah~~Eil~cdw~k--y~~~vl~Tg~vd~~vr~wDir~~r--------~pl~eL~gh~~AVRkvk~Sph~~  247 (311)
T KOG0277|consen  181 --GKFM-SIEAHNSEILCCDWSK--YNHNVLATGGVDNLVRGWDIRNLR--------TPLFELNGHGLAVRKVKFSPHHA  247 (311)
T ss_pred             --Ccee-EEEeccceeEeecccc--cCCcEEEecCCCceEEEEehhhcc--------ccceeecCCceEEEEEecCcchh
Confidence              2222 3888999999999996  356799999999999999999974        45667789999999999999888


Q ss_pred             CeEEEeeCCceEEEEeCC
Q 025649          233 ENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       233 ~~l~s~~~d~~i~vw~~~  250 (250)
                      .+|++++.|-+++|||.+
T Consensus       248 ~lLaSasYDmT~riw~~~  265 (311)
T KOG0277|consen  248 SLLASASYDMTVRIWDPE  265 (311)
T ss_pred             hHhhhccccceEEecccc
Confidence            899999999999999963

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=5.2e-28  Score=189.68  Aligned_cols=208  Identities=18%  Similarity=0.214  Sum_probs=176.6

Q ss_pred             CcEEEEcccceeeee-eccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~-l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      ||++||..+++.+.. +. ||.+.|.++++...+. +|++|+.|.++++||..+|++...+. +            |...
T Consensus       229 tl~~~~~~~~~~i~~~l~-GH~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~C~~~l~-g------------h~st  293 (537)
T KOG0274|consen  229 TLHLWDLNNGYLILTRLV-GHFGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGECTHSLQ-G------------HTSS  293 (537)
T ss_pred             eeEEeecccceEEEeecc-CCCCCceeEEEecCCC-EEEEEecCCcEEeEecCCCcEEEEec-C------------CCce
Confidence            578999999999888 99 9999999999998555 89999999999999999999999998 4            5788


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeee
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRL  155 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  155 (250)
                      +.++...        +.++++|+.|.+|++|+++++..+..+.. +...|.++..+  +.+++ .++.|.    +.....
T Consensus       294 v~~~~~~--------~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--~~~lv-sgs~d~~v~VW~~~~~  361 (537)
T KOG0274|consen  294 VRCLTID--------PFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--EPLLV-SGSYDGTVKVWDPRTG  361 (537)
T ss_pred             EEEEEcc--------CceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--CCEEE-EEecCceEEEEEhhhc
Confidence            8888875        46778899999999999999999988887 56899999988  55555 333333    334588


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                      ++++.+.+|...|+++.+.   .. .++++|+.|++|++||+++..        +++..+.+|.+-+..+.+   .+++|
T Consensus       362 ~cl~sl~gH~~~V~sl~~~---~~-~~~~Sgs~D~~IkvWdl~~~~--------~c~~tl~~h~~~v~~l~~---~~~~L  426 (537)
T KOG0274|consen  362 KCLKSLSGHTGRVYSLIVD---SE-NRLLSGSLDTTIKVWDLRTKR--------KCIHTLQGHTSLVSSLLL---RDNFL  426 (537)
T ss_pred             eeeeeecCCcceEEEEEec---Cc-ceEEeeeeccceEeecCCchh--------hhhhhhcCCccccccccc---cccee
Confidence            8999999999999999886   43 899999999999999999962        355677889888887766   45689


Q ss_pred             EEeeCCceEEEEeCC
Q 025649          236 VVCDTSKVVKVYSIS  250 (250)
Q Consensus       236 ~s~~~d~~i~vw~~~  250 (250)
                      ++++.|++|++||.+
T Consensus       427 vs~~aD~~Ik~WD~~  441 (537)
T KOG0274|consen  427 VSSSADGTIKLWDAE  441 (537)
T ss_pred             EeccccccEEEeecc
Confidence            999999999999863

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=9e-27  Score=163.51  Aligned_cols=208  Identities=13%  Similarity=0.173  Sum_probs=156.7

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      |||.-++.+++.++.|. ||...|.+|+.+|-+. .+++++.|++|++||++..++...+...               .-
T Consensus        81 tIryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~---------------~~  143 (311)
T KOG1446|consen   81 TIRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLS---------------GR  143 (311)
T ss_pred             ceEEEEeecCceEEEcC-CCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecC---------------CC
Confidence            68999999999999999 9999999999999998 8999999999999999988888777644               12


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc-ee---EeeccCCCCCCccceeecccceeEEEeeeeee----ccC
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE-LN---ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGG  152 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  152 (250)
                      ...++.|      .|-++|++...+.|++||++.- +-   ...+..........+.|+|||++++. .....    .+.
T Consensus       144 pi~AfDp------~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl-sT~~s~~~~lDA  216 (311)
T KOG1446|consen  144 PIAAFDP------EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL-STNASFIYLLDA  216 (311)
T ss_pred             cceeECC------CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE-EeCCCcEEEEEc
Confidence            3456666      9999999998889999999973 22   22233344578899999999999983 22111    122


Q ss_pred             eeeeeeccccCcccc---EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeec-cCCceeEEEec
Q 025649          153 KRLHLDYSVGGHTAA---ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-LNKKVNWLCTT  228 (250)
Q Consensus       153 ~~~~~~~~~~~h~~~---v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~  228 (250)
                      -.+..+.++.++...   --...|+   |+++++++|+.||+|.+|+++++         ..+..+.+ +..++.++.|+
T Consensus       217 f~G~~~~tfs~~~~~~~~~~~a~ft---Pds~Fvl~gs~dg~i~vw~~~tg---------~~v~~~~~~~~~~~~~~~fn  284 (311)
T KOG1446|consen  217 FDGTVKSTFSGYPNAGNLPLSATFT---PDSKFVLSGSDDGTIHVWNLETG---------KKVAVLRGPNGGPVSCVRFN  284 (311)
T ss_pred             cCCcEeeeEeeccCCCCcceeEEEC---CCCcEEEEecCCCcEEEEEcCCC---------cEeeEecCCCCCCccccccC
Confidence            222344455444332   2466788   89999999999999999999998         44455555 68889999998


Q ss_pred             CCCCCeEEEeeCCceEEEE
Q 025649          229 PTESENLVVCDTSKVVKVY  247 (250)
Q Consensus       229 ~~~~~~l~s~~~d~~i~vw  247 (250)
                      | .  +..-++.+..+-+|
T Consensus       285 P-~--~~mf~sa~s~l~fw  300 (311)
T KOG1446|consen  285 P-R--YAMFVSASSNLVFW  300 (311)
T ss_pred             C-c--eeeeeecCceEEEE
Confidence            7 3  33344445567777

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=5.2e-28  Score=187.06  Aligned_cols=211  Identities=17%  Similarity=0.185  Sum_probs=179.9

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      .|++|+..+.++++++. .  +.+.+..|.|.++ ++++|...|.+.+||+.+...+.+++.             |.+.|
T Consensus       395 SikiWn~~t~kciRTi~-~--~y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~~l~Eti~A-------------HdgaI  457 (888)
T KOG0306|consen  395 SIKIWNRDTLKCIRTIT-C--GYILASKFVPGDR-YIVLGTKNGELQVFDLASASLVETIRA-------------HDGAI  457 (888)
T ss_pred             cEEEEEccCcceeEEec-c--ccEEEEEecCCCc-eEEEeccCCceEEEEeehhhhhhhhhc-------------cccce
Confidence            47899999999999998 2  2788999999998 899999999999999999888888773             58899


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce-----eEe------eccCCCCCCccceeecccceeEEEeeeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL-----NIS------RSKSTTKPLKGSQSTSKVNIRDAEMEILDQ  149 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (250)
                      ++++.+|      +++.+++|+.|.+|++||..--.     ...      .........+.++.+||||++++ ++..|.
T Consensus       458 Wsi~~~p------D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La-VsLLdn  530 (888)
T KOG0306|consen  458 WSISLSP------DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA-VSLLDN  530 (888)
T ss_pred             eeeeecC------CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE-EEeccC
Confidence            9999999      99999999999999999975311     111      01112236799999999999999 777666


Q ss_pred             cc----CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649          150 SG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL  225 (250)
Q Consensus       150 ~~----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (250)
                      ..    ...++..-.+-||+-+|.|+..+   |++++++|||.|+.|++|-+.-|         .+...+.+|...|.++
T Consensus       531 TVkVyflDtlKFflsLYGHkLPV~smDIS---~DSklivTgSADKnVKiWGLdFG---------DCHKS~fAHdDSvm~V  598 (888)
T KOG0306|consen  531 TVKVYFLDTLKFFLSLYGHKLPVLSMDIS---PDSKLIVTGSADKNVKIWGLDFG---------DCHKSFFAHDDSVMSV  598 (888)
T ss_pred             eEEEEEecceeeeeeecccccceeEEecc---CCcCeEEeccCCCceEEeccccc---------hhhhhhhcccCceeEE
Confidence            54    34555666788999999999999   89999999999999999999998         6667889999999999


Q ss_pred             EecCCCCCeEEEeeCCceEEEEe
Q 025649          226 CTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       226 ~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      .|.| +...|.++|.|+.|+-||
T Consensus       599 ~F~P-~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  599 QFLP-KTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             EEcc-cceeEEEecCcceEEeec
Confidence            9998 677899999999999997

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=8e-28  Score=186.06  Aligned_cols=219  Identities=19%  Similarity=0.236  Sum_probs=183.4

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-----CCCccceecCCCCCCCCCCcccC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-----GRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      +.++|+.+..++.+++ +|.+.|..++.+||+. .+++||.|.+|++||..-     |...+.+...      +....--
T Consensus       436 l~vfdlaS~~l~Eti~-AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~------~~rtLel  507 (888)
T KOG0306|consen  436 LQVFDLASASLVETIR-AHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK------HTRTLEL  507 (888)
T ss_pred             eEEEEeehhhhhhhhh-ccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeec------cceEEec
Confidence            5789999999999999 9999999999999999 799999999999999752     2211112211      1111124


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccC
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGG  152 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  152 (250)
                      ++.|.|+.+||      |+++|+++--|+++++|-+.+-+....+..+ .-++.|+.++||++.++ .++.|.    |..
T Consensus       508 ~ddvL~v~~Sp------dgk~LaVsLLdnTVkVyflDtlKFflsLYGH-kLPV~smDIS~DSkliv-TgSADKnVKiWGL  579 (888)
T KOG0306|consen  508 EDDVLCVSVSP------DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH-KLPVLSMDISPDSKLIV-TGSADKNVKIWGL  579 (888)
T ss_pred             cccEEEEEEcC------CCcEEEEEeccCeEEEEEecceeeeeeeccc-ccceeEEeccCCcCeEE-eccCCCceEEecc
Confidence            57899999999      9999999999999999999987766665555 48999999999999999 444443    344


Q ss_pred             eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649          153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES  232 (250)
Q Consensus       153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (250)
                      .-+.|-+.+-+|...|.++.|.   |...++.+++.|+.|+-||-...         +.+..+.+|...|++++.+| +|
T Consensus       580 dFGDCHKS~fAHdDSvm~V~F~---P~~~~FFt~gKD~kvKqWDg~kF---------e~iq~L~~H~~ev~cLav~~-~G  646 (888)
T KOG0306|consen  580 DFGDCHKSFFAHDDSVMSVQFL---PKTHLFFTCGKDGKVKQWDGEKF---------EEIQKLDGHHSEVWCLAVSP-NG  646 (888)
T ss_pred             ccchhhhhhhcccCceeEEEEc---ccceeEEEecCcceEEeechhhh---------hhheeeccchheeeeeEEcC-CC
Confidence            5666778899999999999999   78889999999999999999987         77788999999999999998 89


Q ss_pred             CeEEEeeCCceEEEEeC
Q 025649          233 ENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       233 ~~l~s~~~d~~i~vw~~  249 (250)
                      .+++++|.|.+|++|..
T Consensus       647 ~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  647 SFVVSSSHDKSIRLWER  663 (888)
T ss_pred             CeEEeccCCceeEeeec
Confidence            99999999999999974

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=5.9e-27  Score=195.90  Aligned_cols=218  Identities=17%  Similarity=0.172  Sum_probs=166.6

Q ss_pred             CcEEEEcccc----e----eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCC
Q 025649            1 MWQIIDIRQH----C----LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAG   72 (250)
Q Consensus         1 ti~iwd~~~~----~----~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~   72 (250)
                      +|+|||+.+.    .    ....+.  +...|.+++|+|....+|++++.||+|++||+.+++.+..+. +         
T Consensus       506 ~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~---------  573 (793)
T PLN00181        506 KIKIFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-E---------  573 (793)
T ss_pred             EEEEEECCcccccccccccceEEec--ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-C---------
Confidence            4899997532    1    122333  456899999998643389999999999999999888776665 3         


Q ss_pred             cccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeec-ccceeEEEeeeeeec-
Q 025649           73 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS-KVNIRDAEMEILDQS-  150 (250)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-  150 (250)
                         |...|++++|+|     .++.+|++|+.|+.|++||++++.....+...  ..+.++.|+ ++|.+++ ++..+.. 
T Consensus       574 ---H~~~V~~l~~~p-----~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g~~la-tgs~dg~I  642 (793)
T PLN00181        574 ---HEKRVWSIDYSS-----ADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESGRSLA-FGSADHKV  642 (793)
T ss_pred             ---CCCCEEEEEEcC-----CCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCCCEEE-EEeCCCeE
Confidence               578899999996     47889999999999999999988777666543  568888885 4677777 3433322 


Q ss_pred             ---cCeee-eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649          151 ---GGKRL-HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC  226 (250)
Q Consensus       151 ---~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (250)
                         +.... ..+..+.+|...|.++.|.    ++.+|++++.|++|++||++......   ....+..+.+|...+..++
T Consensus       643 ~iwD~~~~~~~~~~~~~h~~~V~~v~f~----~~~~lvs~s~D~~ikiWd~~~~~~~~---~~~~l~~~~gh~~~i~~v~  715 (793)
T PLN00181        643 YYYDLRNPKLPLCTMIGHSKTVSYVRFV----DSSTLVSSSTDNTLKLWDLSMSISGI---NETPLHSFMGHTNVKNFVG  715 (793)
T ss_pred             EEEECCCCCccceEecCCCCCEEEEEEe----CCCEEEEEECCCEEEEEeCCCCcccc---CCcceEEEcCCCCCeeEEE
Confidence               22221 2345677899999999997    46799999999999999998532100   0135567789999999999


Q ss_pred             ecCCCCCeEEEeeCCceEEEEeC
Q 025649          227 TTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       227 ~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      |+| ++.+|++|+.|+.|++|+.
T Consensus       716 ~s~-~~~~lasgs~D~~v~iw~~  737 (793)
T PLN00181        716 LSV-SDGYIATGSETNEVFVYHK  737 (793)
T ss_pred             EcC-CCCEEEEEeCCCEEEEEEC
Confidence            998 7889999999999999985

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=1.5e-27  Score=171.19  Aligned_cols=221  Identities=17%  Similarity=0.184  Sum_probs=167.7

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCC--eEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP--WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      ++++||. .|+.+..+. ||.++|.+++|.-..+  ..|++++.|.++++|.++.++........         ...|..
T Consensus       126 ~~riWd~-~Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~---------~~GHk~  194 (423)
T KOG0313|consen  126 TSRIWDL-KGKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKV---------CRGHKR  194 (423)
T ss_pred             eeEEEec-CCceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhH---------hccccc
Confidence            5799997 589999999 9999999888854333  25999999999999999877643322100         013889


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce------------------------eEeeccCCCCCCccceee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL------------------------NISRSKSTTKPLKGSQST  134 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~------------------------~~~~~~~~~~~~~~~~~~  134 (250)
                      .|.++...+      ++..+++|+.|..|.+|+..+..                        .+......+...+.++.|
T Consensus       195 ~V~sVsv~~------sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w  268 (423)
T KOG0313|consen  195 SVDSVSVDS------SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW  268 (423)
T ss_pred             ceeEEEecC------CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence            999999998      99999999999999999933210                        011112234577888899


Q ss_pred             cccceeEEEeeeeeecc----CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccc
Q 025649          135 SKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND  210 (250)
Q Consensus       135 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  210 (250)
                      ++ ...++ .++||.+.    ........++.+ .....|+.++   |..++|++|+.|..|++||.+++...      -
T Consensus       269 ~d-~~v~y-S~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~---~~~~Ll~~gssdr~irl~DPR~~~gs------~  336 (423)
T KOG0313|consen  269 SD-ATVIY-SVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYS---PLSKLLASGSSDRHIRLWDPRTGDGS------V  336 (423)
T ss_pred             cC-CCceE-eecccceEEEEEeecccceeeeec-CcceeEeecc---cccceeeecCCCCceeecCCCCCCCc------e
Confidence            88 33333 45555443    233334444443 4568999999   78899999999999999999997543      4


Q ss_pred             eeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          211 LLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       211 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ....+.+|.+.|.++.|+|.+...|++|+.|+++++||++
T Consensus       337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR  376 (423)
T KOG0313|consen  337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR  376 (423)
T ss_pred             eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence            5567889999999999999888899999999999999985

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.7e-27  Score=180.95  Aligned_cols=211  Identities=17%  Similarity=0.164  Sum_probs=176.1

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCce
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      |||++..|++.+..|. +|.+-|.+++.+|..+ +++|+|+|-+|++||.+.+ .+.+++. +            |...|
T Consensus        79 IrVfnynt~ekV~~Fe-AH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfe-G------------H~HyV  143 (794)
T KOG0276|consen   79 IRVFNYNTGEKVKTFE-AHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFE-G------------HEHYV  143 (794)
T ss_pred             EEEEecccceeeEEee-ccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEc-C------------cceEE
Confidence            8999999999999999 9999999999999999 9999999999999999865 5666666 4            68899


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccc--eeEEE---eeeeeeccCeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN--IRDAE---MEILDQSGGKRL  155 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~  155 (250)
                      .+++|+|     .|.+.+++++-|++|++|.+.+.....++..+ ...+.++.+-+-|  .++++   ......|+-++.
T Consensus       144 Mqv~fnP-----kD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk  217 (794)
T KOG0276|consen  144 MQVAFNP-----KDPNTFASASLDRTVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK  217 (794)
T ss_pred             EEEEecC-----CCccceeeeeccccEEEEEcCCCCCceeeecc-ccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence            9999999     78999999999999999999998888888755 5889999998765  56663   122344556777


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                      .|++++.||...|..+.|+   |.-.+++|||+||+++||+..+.         .+...+.-.-+.+++++..+ .+..+
T Consensus       218 ~CV~TLeGHt~Nvs~v~fh---p~lpiiisgsEDGTvriWhs~Ty---------~lE~tLn~gleRvW~I~~~k-~~~~i  284 (794)
T KOG0276|consen  218 SCVQTLEGHTNNVSFVFFH---PELPIIISGSEDGTVRIWNSKTY---------KLEKTLNYGLERVWCIAAHK-GDGKI  284 (794)
T ss_pred             HHHHHhhcccccceEEEec---CCCcEEEEecCCccEEEecCcce---------ehhhhhhcCCceEEEEeecC-CCCeE
Confidence            8999999999999999999   78889999999999999999986         33333344456799998887 44458


Q ss_pred             EEeeCCceEEE
Q 025649          236 VVCDTSKVVKV  246 (250)
Q Consensus       236 ~s~~~d~~i~v  246 (250)
                      +.|..+|.|.+
T Consensus       285 ~vG~Deg~i~v  295 (794)
T KOG0276|consen  285 AVGFDEGSVTV  295 (794)
T ss_pred             EEeccCCcEEE
Confidence            88888887654

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.96  E-value=9.3e-27  Score=171.34  Aligned_cols=213  Identities=17%  Similarity=0.168  Sum_probs=176.5

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      |+.|||..+++..+.+. -|..+-.++.|-.+..  +++++.|+.|+++.+...+++.++. +            |...|
T Consensus       299 ttilwd~~~g~~~q~f~-~~s~~~lDVdW~~~~~--F~ts~td~~i~V~kv~~~~P~~t~~-G------------H~g~V  362 (524)
T KOG0273|consen  299 TTILWDAHTGTVKQQFE-FHSAPALDVDWQSNDE--FATSSTDGCIHVCKVGEDRPVKTFI-G------------HHGEV  362 (524)
T ss_pred             cEEEEeccCceEEEeee-eccCCccceEEecCce--EeecCCCceEEEEEecCCCcceeee-c------------ccCce
Confidence            57899999999999999 8888877899988775  9999999999999999888888887 4            68899


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccce---------eEEE---eeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI---------RDAE---MEILD  148 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~  148 (250)
                      .++.|+|      .+.+|++++.|+++++|..........+..+. ..|..+.|+|+|.         .+++   .+...
T Consensus       363 ~alk~n~------tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs-kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~  435 (524)
T KOG0273|consen  363 NALKWNP------TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS-KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVK  435 (524)
T ss_pred             EEEEECC------CCceEEEecCCCeeEeeecCCCcchhhhhhhc-cceeeEeecCCCCccCCCcCCceEEEeecCCeEE
Confidence            9999999      99999999999999999988766666555553 5677788887653         3332   12233


Q ss_pred             eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649          149 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT  228 (250)
Q Consensus       149 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  228 (250)
                      .++.....+++.|..|..+|++++|+   |+|+|+|+|+.||.|.+|+.+++         ++.+.+ .-.+.|..++|+
T Consensus       436 lwdv~~gv~i~~f~kH~~pVysvafS---~~g~ylAsGs~dg~V~iws~~~~---------~l~~s~-~~~~~Ifel~Wn  502 (524)
T KOG0273|consen  436 LWDVESGVPIHTLMKHQEPVYSVAFS---PNGRYLASGSLDGCVHIWSTKTG---------KLVKSY-QGTGGIFELCWN  502 (524)
T ss_pred             EEEccCCceeEeeccCCCceEEEEec---CCCcEEEecCCCCeeEeccccch---------heeEee-cCCCeEEEEEEc
Confidence            34456677888999999999999999   89999999999999999999997         554443 444569999999


Q ss_pred             CCCCCeEEEeeCCceEEEEeCC
Q 025649          229 PTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       229 ~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      . +|..|..+-.|+.+.+-|++
T Consensus       503 ~-~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  503 A-AGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             C-CCCEEEEEecCCCceEEEec
Confidence            7 77888888889999999875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.2e-28  Score=187.49  Aligned_cols=180  Identities=18%  Similarity=0.360  Sum_probs=153.1

Q ss_pred             cEEEEccc---ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQ---HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~---~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |.+||+..   .+++..|. .|+..++++.|++..+++|++||.||+|++||++..+...++..             ..+
T Consensus       112 i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-------------nSE  177 (839)
T KOG0269|consen  112 ISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-------------NSE  177 (839)
T ss_pred             EEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-------------cch
Confidence            78999986   67778888 99999999999999988999999999999999998887777762             367


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD  158 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (250)
                      .|..+.|+|     ..+.+++++...|.+++||++..                                       .++.
T Consensus       178 SiRDV~fsp-----~~~~~F~s~~dsG~lqlWDlRqp---------------------------------------~r~~  213 (839)
T KOG0269|consen  178 SIRDVKFSP-----GYGNKFASIHDSGYLQLWDLRQP---------------------------------------DRCE  213 (839)
T ss_pred             hhhceeecc-----CCCceEEEecCCceEEEeeccCc---------------------------------------hhHH
Confidence            899999999     57899999999999999999842                                       2345


Q ss_pred             ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649          159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC  238 (250)
Q Consensus       159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  238 (250)
                      .++.+|.++|.|+.|+   |++.+||||+.|+.|+|||+.+...        ..........+|..+.|-|....+|+++
T Consensus       214 ~k~~AH~GpV~c~nwh---Pnr~~lATGGRDK~vkiWd~t~~~~--------~~~~tInTiapv~rVkWRP~~~~hLAtc  282 (839)
T KOG0269|consen  214 KKLTAHNGPVLCLNWH---PNREWLATGGRDKMVKIWDMTDSRA--------KPKHTINTIAPVGRVKWRPARSYHLATC  282 (839)
T ss_pred             HHhhcccCceEEEeec---CCCceeeecCCCccEEEEeccCCCc--------cceeEEeecceeeeeeeccCccchhhhh
Confidence            6788999999999999   8999999999999999999997521        1123344556899999999777778887


Q ss_pred             e--CCceEEEEeCC
Q 025649          239 D--TSKVVKVYSIS  250 (250)
Q Consensus       239 ~--~d~~i~vw~~~  250 (250)
                      +  .|-.|+|||++
T Consensus       283 smv~dtsV~VWDvr  296 (839)
T KOG0269|consen  283 SMVVDTSVHVWDVR  296 (839)
T ss_pred             hccccceEEEEeec
Confidence            6  58899999985

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=2.3e-27  Score=166.60  Aligned_cols=215  Identities=17%  Similarity=0.139  Sum_probs=158.5

Q ss_pred             eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC---CCccceecCCCCCC-C-CCCcccCCCceeEEecCCC
Q 025649           14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG---RPNKIVNFGLPENN-G-NAGQCYNPAFVHAIAIPDA   88 (250)
Q Consensus        14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~   88 (250)
                      ..+. .|..++.+-+|+|||. ++++|+.|..|+|.|++..   .....+..+.+++. + ...+.-|.+.|+.+.|+| 
T Consensus       106 ~ylt-~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-  182 (430)
T KOG0640|consen  106 KYLT-SHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-  182 (430)
T ss_pred             EEEe-ecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-
Confidence            4566 8999999999999999 9999999999999998731   11122222222222 1 134445888999999999 


Q ss_pred             cccCCCCCEEEEEeCCCeEEEEeCCCceeEeecc-CCCCCCccceeecccceeEEEeeeeee----ccCeeeeee---cc
Q 025649           89 DMLDKTNKICVVAKGDGVVDVINIESELNISRSK-STTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLD---YS  160 (250)
Q Consensus        89 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~  160 (250)
                           ...+|++|+.|++|++||........-++ ......+.+++|+|.|.+++ +|....    .+.+..++.   ..
T Consensus       183 -----re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanP  256 (430)
T KOG0640|consen  183 -----RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANP  256 (430)
T ss_pred             -----hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCc
Confidence                 89999999999999999997633222111 12237899999999999998 443221    122333322   23


Q ss_pred             ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee-eccCC-ceeEEEecCCCCCeEEEe
Q 025649          161 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-INLNK-KVNWLCTTPTESENLVVC  238 (250)
Q Consensus       161 ~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~~~~~~~~l~s~  238 (250)
                      -..|.+.|+++.|+   +.|++.++||.||.|++||--+..++         ..+ ..|.+ .|.+..|. .+++++++.
T Consensus       257 d~qht~ai~~V~Ys---~t~~lYvTaSkDG~IklwDGVS~rCv---------~t~~~AH~gsevcSa~Ft-kn~kyiLsS  323 (430)
T KOG0640|consen  257 DDQHTGAITQVRYS---STGSLYVTASKDGAIKLWDGVSNRCV---------RTIGNAHGGSEVCSAVFT-KNGKYILSS  323 (430)
T ss_pred             ccccccceeEEEec---CCccEEEEeccCCcEEeeccccHHHH---------HHHHhhcCCceeeeEEEc-cCCeEEeec
Confidence            35799999999999   89999999999999999998887443         333 45665 46666666 599999999


Q ss_pred             eCCceEEEEeCC
Q 025649          239 DTSKVVKVYSIS  250 (250)
Q Consensus       239 ~~d~~i~vw~~~  250 (250)
                      +.|..+++|.+.
T Consensus       324 G~DS~vkLWEi~  335 (430)
T KOG0640|consen  324 GKDSTVKLWEIS  335 (430)
T ss_pred             CCcceeeeeeec
Confidence            999999999873

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=2.2e-26  Score=171.60  Aligned_cols=219  Identities=16%  Similarity=0.177  Sum_probs=166.6

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |.+-+++.......+. .|..+++-..|+|.|. ++++|...|.|||||....+.+..-++.           .-..+|.
T Consensus        41 v~ir~i~~~~~~~iYt-EH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~-----------v~aG~I~  107 (603)
T KOG0318|consen   41 VIIRNIDNPASVDIYT-EHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ-----------VLAGPIK  107 (603)
T ss_pred             EEEEECCCccceeeec-cccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-----------ecccccc
Confidence            3455666666667777 9999999999999999 9999999999999998654322221111           1246799


Q ss_pred             EEecCCCcccCCCCCEEEEEeC--CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----cCeee
Q 025649           82 AIAIPDADMLDKTNKICVVAKG--DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRL  155 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  155 (250)
                      .++|++      ++++|++.++  ++..+++-.+++....++..+ ...+.++.|-|...+-+..+..|..    .+.++
T Consensus       108 Di~Wd~------ds~RI~avGEGrerfg~~F~~DSG~SvGei~Gh-Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF  180 (603)
T KOG0318|consen  108 DISWDF------DSKRIAAVGEGRERFGHVFLWDSGNSVGEITGH-SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF  180 (603)
T ss_pred             cceeCC------CCcEEEEEecCccceeEEEEecCCCccceeecc-ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe
Confidence            999998      8888877653  444445544555555555444 3678888888877665545554444    46677


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                      +...++..|..-|.|+.|+   |||.++++++.||+|.+||=.+++.+.      .+....+|.+.|++++|+| |++.|
T Consensus       181 KFk~s~r~HskFV~~VRys---PDG~~Fat~gsDgki~iyDGktge~vg------~l~~~~aHkGsIfalsWsP-Ds~~~  250 (603)
T KOG0318|consen  181 KFKSSFREHSKFVNCVRYS---PDGSRFATAGSDGKIYIYDGKTGEKVG------ELEDSDAHKGSIFALSWSP-DSTQF  250 (603)
T ss_pred             eeeecccccccceeeEEEC---CCCCeEEEecCCccEEEEcCCCccEEE------EecCCCCccccEEEEEECC-CCceE
Confidence            7778889999999999999   899999999999999999999995442      2222348999999999998 99999


Q ss_pred             EEeeCCceEEEEeCC
Q 025649          236 VVCDTSKVVKVYSIS  250 (250)
Q Consensus       236 ~s~~~d~~i~vw~~~  250 (250)
                      +|++.|.+++|||++
T Consensus       251 ~T~SaDkt~KIWdVs  265 (603)
T KOG0318|consen  251 LTVSADKTIKIWDVS  265 (603)
T ss_pred             EEecCCceEEEEEee
Confidence            999999999999974

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=6.9e-27  Score=171.07  Aligned_cols=213  Identities=17%  Similarity=0.194  Sum_probs=167.5

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      .|.+.|+.+.+.|..+.++++.+..+.|.|||..+-....... +  ...+...+..|.+.-+++.|++     ...-.|
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-~--~~~Pdl~L~gH~~eg~glsWn~-----~~~g~L  193 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-G--ECRPDLRLKGHEKEGYGLSWNR-----QQEGTL  193 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-c--cCCCceEEEeeccccccccccc-----ccceeE
Confidence            4999999999999998788899999999999987543222211 0  1122334555777678899998     467789


Q ss_pred             EEEeCCCeEEEEeCCCcee------EeeccCCCCCCccceeecccceeEEE-------eeeeeeccCeeeeeeccccCcc
Q 025649           99 VVAKGDGVVDVINIESELN------ISRSKSTTKPLKGSQSTSKVNIRDAE-------MEILDQSGGKRLHLDYSVGGHT  165 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~h~  165 (250)
                      ++++.|++|++||+.....      .......+...+..++|++-...++.       ...||.+.. ..++.+...+|.
T Consensus       194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~  272 (422)
T KOG0264|consen  194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHS  272 (422)
T ss_pred             eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccC
Confidence            9999999999999986432      23344455688999999986655542       234555542 556667788999


Q ss_pred             ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649          166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK  245 (250)
Q Consensus       166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  245 (250)
                      +.|.|++|+|  .++..|||||.|++|++||+|+..        ..+..+.+|...|..+.|+|.....|++++.|+.+.
T Consensus       273 ~~vn~~~fnp--~~~~ilAT~S~D~tV~LwDlRnL~--------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~  342 (422)
T KOG0264|consen  273 AEVNCVAFNP--FNEFILATGSADKTVALWDLRNLN--------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN  342 (422)
T ss_pred             CceeEEEeCC--CCCceEEeccCCCcEEEeechhcc--------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence            9999999997  457899999999999999999975        567889999999999999998888999999999999


Q ss_pred             EEeCC
Q 025649          246 VYSIS  250 (250)
Q Consensus       246 vw~~~  250 (250)
                      |||+.
T Consensus       343 vWDls  347 (422)
T KOG0264|consen  343 VWDLS  347 (422)
T ss_pred             EEecc
Confidence            99974

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.9e-27  Score=169.88  Aligned_cols=220  Identities=12%  Similarity=0.142  Sum_probs=165.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCC-----------------
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL-----------------   64 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----------------   64 (250)
                      |+|||+.+.+++.+|+ +|.+.|..|++..  . .+++++.|.+|+.|.+.- .+++++....                 
T Consensus        91 VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~-~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTc  165 (433)
T KOG0268|consen   91 VKIWNLSQRECIRTFK-AHEGLVRGICVTQ--T-SFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATC  165 (433)
T ss_pred             EEEEehhhhhhhheee-cccCceeeEEecc--c-ceEEecCCcceeeeeccC-Ccceeeecccccccccccccccccccc
Confidence            7999999999999999 9999999999998  3 589999999999998642 2222221000                 


Q ss_pred             ---------CCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeec
Q 025649           65 ---------PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS  135 (250)
Q Consensus        65 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  135 (250)
                               .-..+.....+..+.|.++.|+|     -...+|++++.|+.|.+||++.+..+......  .....++|+
T Consensus       166 Ge~i~IWD~~R~~Pv~smswG~Dti~svkfNp-----vETsILas~~sDrsIvLyD~R~~~Pl~KVi~~--mRTN~Iswn  238 (433)
T KOG0268|consen  166 GEQIDIWDEQRDNPVSSMSWGADSISSVKFNP-----VETSILASCASDRSIVLYDLRQASPLKKVILT--MRTNTICWN  238 (433)
T ss_pred             CceeeecccccCCccceeecCCCceeEEecCC-----CcchheeeeccCCceEEEecccCCccceeeee--ccccceecC
Confidence                     00001122333456788888888     46778899999999999999998877665544  466789999


Q ss_pred             ccceeEEEeeeeeecc-----CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccc
Q 025649          136 KVNIRDAEMEILDQSG-----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND  210 (250)
Q Consensus       136 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  210 (250)
                      |++ +.++++..|...     ..-.+++..+.+|...|..+.||   |.|+-+++||.|.+|+||..+.+...       
T Consensus       239 Pea-fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs---ptG~EfvsgsyDksIRIf~~~~~~SR-------  307 (433)
T KOG0268|consen  239 PEA-FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS---PTGQEFVSGSYDKSIRIFPVNHGHSR-------  307 (433)
T ss_pred             ccc-cceeeccccccceehhhhhhcccchhhcccceeEEEeccC---CCcchhccccccceEEEeecCCCcch-------
Confidence            944 444455555442     22334567788999999999999   89999999999999999999887432       


Q ss_pred             eeeeeeccC---CceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          211 LLIKNINLN---KKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       211 ~~~~~~~~~---~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                          -.-|+   +.|.++.|+. |.+++++||.|+.|++|.-
T Consensus       308 ----diYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  308 ----DIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             ----hhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeec
Confidence                11232   3589999996 9999999999999999963

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=2.1e-26  Score=168.02  Aligned_cols=214  Identities=18%  Similarity=0.222  Sum_probs=176.4

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      ++.++|..+++.+..|+ ||...|+.+.|+|+.. .+++++.|-.|++|............             .|..+|
T Consensus       242 ~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s~~~~~~-------------~h~~~V  306 (506)
T KOG0289|consen  242 TAVLFDKPSNQILATLK-GHTKKITSVKFHKDLD-TVITASADEIIRVWSVPLSSEPTSSR-------------PHEEPV  306 (506)
T ss_pred             ceEEEecchhhhhhhcc-CcceEEEEEEeccchh-heeecCCcceEEeeccccccCccccc-------------cccccc
Confidence            46789999999999999 9999999999999998 89999999999999987665444433             257899


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC-CCCCccceeecccceeEEE---eeeeeeccCeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-TKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLH  156 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  156 (250)
                      +.+..+|      .|.||++++.|++..+.|++++..+...... ..-.+.+.+|+|||..+++   .+..+.++.....
T Consensus       307 ~~ls~h~------tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~  380 (506)
T KOG0289|consen  307 TGLSLHP------TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT  380 (506)
T ss_pred             eeeeecc------CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence            9999998      9999999999999999999999887665543 3466899999999999985   3344455555555


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee-eccCCceeEEEecCCCCCeE
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-INLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l  235 (250)
                      .+..|.+|.++|..++|+   .||.+|++++.|+.|++||++.....         ..+ .....++.++.|.+ .|++|
T Consensus       381 ~~a~Fpght~~vk~i~Fs---ENGY~Lat~add~~V~lwDLRKl~n~---------kt~~l~~~~~v~s~~fD~-SGt~L  447 (506)
T KOG0289|consen  381 NVAKFPGHTGPVKAISFS---ENGYWLATAADDGSVKLWDLRKLKNF---------KTIQLDEKKEVNSLSFDQ-SGTYL  447 (506)
T ss_pred             ccccCCCCCCceeEEEec---cCceEEEEEecCCeEEEEEehhhccc---------ceeeccccccceeEEEcC-CCCeE
Confidence            678999999999999999   99999999999999999999997432         222 23334799999986 89999


Q ss_pred             EEeeCCceEEEEe
Q 025649          236 VVCDTSKVVKVYS  248 (250)
Q Consensus       236 ~s~~~d~~i~vw~  248 (250)
                      +.++.|=.|++++
T Consensus       448 ~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  448 GIAGSDLQVYICK  460 (506)
T ss_pred             EeecceeEEEEEe
Confidence            9998776666654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1e-26  Score=186.25  Aligned_cols=212  Identities=17%  Similarity=0.213  Sum_probs=166.4

Q ss_pred             cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCC
Q 025649            9 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA   88 (250)
Q Consensus         9 ~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   88 (250)
                      ..+....|. +|.+.|..++|+|++. +|++++.|++|.+||..+.+.+..++ +            |...|..+.|.| 
T Consensus       118 ~wk~~~~l~-~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~-~------------H~s~VKGvs~DP-  181 (942)
T KOG0973|consen  118 SWKVVSILR-GHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLR-G------------HQSLVKGVSWDP-  181 (942)
T ss_pred             eeeEEEEEe-cCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeee-c------------ccccccceEECC-
Confidence            345778899 9999999999999999 99999999999999999998888887 3            578999999999 


Q ss_pred             cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC-----CCCCccceeecccceeEEEeeeeeec-------cCeeee
Q 025649           89 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-----TKPLKGSQSTSKVNIRDAEMEILDQS-------GGKRLH  156 (250)
Q Consensus        89 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  156 (250)
                           -|++|++-+.|++|++|++.+......+..+     .......+.|||||.++++....+..       .+..-+
T Consensus       182 -----~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk  256 (942)
T KOG0973|consen  182 -----IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK  256 (942)
T ss_pred             -----ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCce
Confidence                 9999999999999999998775444443332     23567889999999999963332221       223333


Q ss_pred             eeccccCccccEEEEEeecC--C-CC-------Cc----EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCce
Q 025649          157 LDYSVGGHTAAASCVAFSMF--G-ER-------GK----YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV  222 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~--~-~~-------~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  222 (250)
                      .-..|-||.+++.+++|+|.  - +.       .+    .+|+||.|++|-||......        +++....-....|
T Consensus       257 ~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R--------Pl~vi~~lf~~SI  328 (942)
T KOG0973|consen  257 VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR--------PLFVIHNLFNKSI  328 (942)
T ss_pred             eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC--------chhhhhhhhcCce
Confidence            44578899999999999971  0 01       11    57889999999999997652        2222233345689


Q ss_pred             eEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          223 NWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       223 ~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ..++|+| ||..|+.+|.||+|.+..++
T Consensus       329 ~DmsWsp-dG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  329 VDMSWSP-DGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             eeeeEcC-CCCeEEEEecCCeEEEEEcc
Confidence            9999998 99999999999999998753

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=7.2e-26  Score=178.44  Aligned_cols=213  Identities=16%  Similarity=0.190  Sum_probs=169.1

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      .|++|+.++.+++.+|. ||-+-|..+.|++.-+ -++|+|+|.+|+||+..+++++..+. +            |.-.|
T Consensus        74 kIkVWnYk~rrclftL~-GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavlt-G------------HnHYV  138 (1202)
T KOG0292|consen   74 KIKVWNYKTRRCLFTLL-GHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLT-G------------HNHYV  138 (1202)
T ss_pred             EEEEEecccceehhhhc-cccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEe-c------------CceEE
Confidence            48999999999999999 9999999999999999 59999999999999999999999988 4            68899


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee----------------------------EeeccCCCCCCccce
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN----------------------------ISRSKSTTKPLKGSQ  132 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----------------------------~~~~~~~~~~~~~~~  132 (250)
                      .|..|+|      ....++++|-|.+||+||+..-+.                            +..+...++..+.-+
T Consensus       139 McAqFhp------tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa  212 (1202)
T KOG0292|consen  139 MCAQFHP------TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA  212 (1202)
T ss_pred             EeeccCC------ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence            9999999      899999999999999999864211                            111223345678888


Q ss_pred             eecccceeEEEeeeeeecc------CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecc
Q 025649          133 STSKVNIRDAEMEILDQSG------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS  206 (250)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  206 (250)
                      +|+|.-..++ +|..|...      ....-.+.+..+|.+.|.++-|+   |..+++++.|+|++|++||+...      
T Consensus       213 AfhpTlpliV-SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh---p~q~lIlSnsEDksirVwDm~kR------  282 (1202)
T KOG0292|consen  213 AFHPTLPLIV-SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH---PHQDLILSNSEDKSIRVWDMTKR------  282 (1202)
T ss_pred             EecCCcceEE-ecCCcceeeEEEeccccceeehhhhcccCCcceEEec---CccceeEecCCCccEEEEecccc------
Confidence            9999888888 33332221      11112345778999999999999   88899999999999999999997      


Q ss_pred             cccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          207 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       207 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                         ..+..+.-..+.-+.++.+| ..++++ ++.|+-+.||.+
T Consensus       283 ---t~v~tfrrendRFW~laahP-~lNLfA-AgHDsGm~VFkl  320 (1202)
T KOG0292|consen  283 ---TSVQTFRRENDRFWILAAHP-ELNLFA-AGHDSGMIVFKL  320 (1202)
T ss_pred             ---cceeeeeccCCeEEEEEecC-Ccceee-eecCCceEEEEE
Confidence               44455555666778888887 565444 445655667654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=3.5e-27  Score=170.93  Aligned_cols=209  Identities=18%  Similarity=0.191  Sum_probs=163.4

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      ++++|++...+...+|. ||++.|+++.|..... .+++|+.|.+|++||+....+.+++...              ..+
T Consensus       242 ~~r~Wnvd~~r~~~TLs-GHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~~--------------S~c  305 (459)
T KOG0288|consen  242 NLRLWNVDSLRLRHTLS-GHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLPG--------------SQC  305 (459)
T ss_pred             ceeeeeccchhhhhhhc-ccccceeeehhhcccc-ceeeccccchhhhhhhhhhheecccccc--------------ccc
Confidence            36899999999999999 9999999999998876 5999999999999999998888777644              344


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec---cCeeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS---GGKRLHL  157 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  157 (250)
                      ..+..+        ...+++|-.|+.|++||.++..........  +.+.++..+++|..+.+..--|..   +....+.
T Consensus       306 nDI~~~--------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI  375 (459)
T KOG0288|consen  306 NDIVCS--------ISDVISGHFDKKVRFWDIRSADKTRSVPLG--GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI  375 (459)
T ss_pred             cceEec--------ceeeeecccccceEEEeccCCceeeEeecC--cceeeEeeccCCeEEeeecCCCceeeeecccccE
Confidence            444443        456788999999999999998887777665  699999999999999854322221   2222222


Q ss_pred             eccccC----ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeec-cCC-ceeEEEecCCC
Q 025649          158 DYSVGG----HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-LNK-KVNWLCTTPTE  231 (250)
Q Consensus       158 ~~~~~~----h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~~  231 (250)
                      ...+.+    .....+.+.||   |++.|+++||.||.|+||++.+++.         ...... +.. .|++++|+| .
T Consensus       376 ~~~~sA~g~k~asDwtrvvfS---pd~~YvaAGS~dgsv~iW~v~tgKl---------E~~l~~s~s~~aI~s~~W~~-s  442 (459)
T KOG0288|consen  376 RQTFSAEGFKCASDWTRVVFS---PDGSYVAAGSADGSVYIWSVFTGKL---------EKVLSLSTSNAAITSLSWNP-S  442 (459)
T ss_pred             EEEeeccccccccccceeEEC---CCCceeeeccCCCcEEEEEccCceE---------EEEeccCCCCcceEEEEEcC-C
Confidence            222221    12237889999   8999999999999999999999843         333333 222 699999998 8


Q ss_pred             CCeEEEeeCCceEEEEe
Q 025649          232 SENLVVCDTSKVVKVYS  248 (250)
Q Consensus       232 ~~~l~s~~~d~~i~vw~  248 (250)
                      |..+++++.++.+.+|.
T Consensus       443 G~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  443 GSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CchhhcccCCcceEecC
Confidence            89999999999999994

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.2e-26  Score=161.31  Aligned_cols=219  Identities=14%  Similarity=0.179  Sum_probs=148.7

Q ss_pred             eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc--cce----ecCCC-------CCC------------
Q 025649           14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN--KIV----NFGLP-------ENN------------   68 (250)
Q Consensus        14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~--~~~----~~~~~-------~~~------------   68 (250)
                      ..|+ +|.+.|++++|+.||+ +|+|++.|++|++|+++.....  +.+    ..+.+       +..            
T Consensus        80 ~~LK-gH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   80 SVLK-GHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhh-ccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence            4678 9999999999999999 8999999999999999753211  111    11100       000            


Q ss_pred             -----------CC----------CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCC
Q 025649           69 -----------GN----------AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP  127 (250)
Q Consensus        69 -----------~~----------~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  127 (250)
                                 ..          .-...|...+..+.+..      ++++|++++.|..|.+|+++ |+.+..+.... .
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~------~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq-~  229 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG------NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ-S  229 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecC------CceEEEEecCCCcEEEEecC-Cceeeeecccc-c
Confidence                       00          00001112223333332      67899999999999999999 77777665543 5


Q ss_pred             CccceeecccceeEEEee------eeeeccC-----eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEe
Q 025649          128 LKGSQSTSKVNIRDAEME------ILDQSGG-----KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  196 (250)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd  196 (250)
                      .....+.||+|++++..+      .|...-.     +....+..++||...|...+|+   ++.+.++|.|.||+++|||
T Consensus       230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs---n~S~r~vtvSkDG~wriwd  306 (420)
T KOG2096|consen  230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS---NSSTRAVTVSKDGKWRIWD  306 (420)
T ss_pred             cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC---CCcceeEEEecCCcEEEee
Confidence            566788999999999533      2332211     2333456789999999999999   8999999999999999999


Q ss_pred             cCCCcce----e----------------------------------------cccccceeeeeeccCCceeEEEecCCCC
Q 025649          197 CSRFQGV----Q----------------------------------------TSINNDLLIKNINLNKKVNWLCTTPTES  232 (250)
Q Consensus       197 ~~~~~~~----~----------------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (250)
                      ..-....    .                                        ...+.........|+..|.+++|++ +|
T Consensus       307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g  385 (420)
T KOG2096|consen  307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DG  385 (420)
T ss_pred             ccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CC
Confidence            7532111    0                                        0000011112235788899999998 99


Q ss_pred             CeEEEeeCCceEEEE
Q 025649          233 ENLVVCDTSKVVKVY  247 (250)
Q Consensus       233 ~~l~s~~~d~~i~vw  247 (250)
                      +++++++ |+.+++.
T Consensus       386 ~~~atcG-dr~vrv~  399 (420)
T KOG2096|consen  386 KYIATCG-DRYVRVI  399 (420)
T ss_pred             cEEeeec-ceeeeee
Confidence            9999988 7777775

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=4.7e-26  Score=178.78  Aligned_cols=205  Identities=20%  Similarity=0.255  Sum_probs=172.9

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      |+++||..+|++...+. +|.+.|.++...+.   ++++|+.|.+|++|+++++..+..+. +            |...|
T Consensus       272 t~rvWd~~sg~C~~~l~-gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~-~------------h~~~V  334 (537)
T KOG0274|consen  272 TERVWDCSTGECTHSLQ-GHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLR-G------------HTGPV  334 (537)
T ss_pred             cEEeEecCCCcEEEEec-CCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEec-c------------ccccE
Confidence            68999999999999999 99999999997765   78999999999999999999988887 2            57899


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeee-
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRL-  155 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-  155 (250)
                      .++...        +.++++|+.|++|++||+.+++.+..+..+ ...+.++.+... ..++ .|..|.    ++.... 
T Consensus       335 ~~v~~~--------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH-~~~V~sl~~~~~-~~~~-Sgs~D~~IkvWdl~~~~  403 (537)
T KOG0274|consen  335 NCVQLD--------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH-TGRVYSLIVDSE-NRLL-SGSLDTTIKVWDLRTKR  403 (537)
T ss_pred             EEEEec--------CCEEEEEecCceEEEEEhhhceeeeeecCC-cceEEEEEecCc-ceEE-eeeeccceEeecCCchh
Confidence            999874        789999999999999999999999988884 588889887776 4554 444443    344555 


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeec-cCCceeEEEecCCCCCe
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-LNKKVNWLCTTPTESEN  234 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~  234 (250)
                      +++..+.+|..-+..+.+.     +++|++++.|++|++||...+         +++..+.+ |...|..++..   ...
T Consensus       404 ~c~~tl~~h~~~v~~l~~~-----~~~Lvs~~aD~~Ik~WD~~~~---------~~~~~~~~~~~~~v~~l~~~---~~~  466 (537)
T KOG0274|consen  404 KCIHTLQGHTSLVSSLLLR-----DNFLVSSSADGTIKLWDAEEG---------ECLRTLEGRHVGGVSALALG---KEE  466 (537)
T ss_pred             hhhhhhcCCcccccccccc-----cceeEeccccccEEEeecccC---------ceeeeeccCCcccEEEeecC---cce
Confidence            8899999999998877754     689999999999999999998         55566666 66888888765   246


Q ss_pred             EEEeeCCceEEEEeCC
Q 025649          235 LVVCDTSKVVKVYSIS  250 (250)
Q Consensus       235 l~s~~~d~~i~vw~~~  250 (250)
                      +++++.||.+++||++
T Consensus       467 il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  467 ILCSSDDGSVKLWDLR  482 (537)
T ss_pred             EEEEecCCeeEEEecc
Confidence            8999999999999985

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=1.5e-25  Score=160.23  Aligned_cols=166  Identities=18%  Similarity=0.183  Sum_probs=141.8

Q ss_pred             eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649           12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML   91 (250)
Q Consensus        12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   91 (250)
                      .+.+|. .|+..|.+++.+|+.+ +++||+.|..-.+|++.++.....+. +            |.+.|.++.|+-    
T Consensus        56 S~~tF~-~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~elt-g------------HKDSVt~~~Fsh----  116 (399)
T KOG0296|consen   56 SLVTFD-KHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGELT-G------------HKDSVTCCSFSH----  116 (399)
T ss_pred             ceeehh-hcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeEec-C------------CCCceEEEEEcc----
Confidence            456788 9999999999999777 89999999999999999999666665 4            789999999997    


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc----CeeeeeeccccCcccc
Q 025649           92 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAA  167 (250)
Q Consensus        92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~  167 (250)
                        ++.+||+|.-+|.|++|+..++.....+.. ....+.-+.|+|.+..++ .|..|+..    .......+.+.||..+
T Consensus       117 --dgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~WHp~a~ill-AG~~DGsvWmw~ip~~~~~kv~~Gh~~~  192 (399)
T KOG0296|consen  117 --DGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLKWHPRAHILL-AGSTDGSVWMWQIPSQALCKVMSGHNSP  192 (399)
T ss_pred             --CceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEEecccccEEE-eecCCCcEEEEECCCcceeeEecCCCCC
Confidence              999999999999999999999887776652 236788899999998888 66555542    2333456788999999


Q ss_pred             EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649          168 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV  203 (250)
Q Consensus       168 v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~  203 (250)
                      +++=.|.   |+|+.++++..||+|++||+++++..
T Consensus       193 ct~G~f~---pdGKr~~tgy~dgti~~Wn~ktg~p~  225 (399)
T KOG0296|consen  193 CTCGEFI---PDGKRILTGYDDGTIIVWNPKTGQPL  225 (399)
T ss_pred             ccccccc---CCCceEEEEecCceEEEEecCCCcee
Confidence            9999999   89999999999999999999998654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.5e-26  Score=175.17  Aligned_cols=215  Identities=15%  Similarity=0.171  Sum_probs=175.5

Q ss_pred             CcEEEEcccce------eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC--CCccceecCCCCCCCCCC
Q 025649            1 MWQIIDIRQHC------LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAG   72 (250)
Q Consensus         1 ti~iwd~~~~~------~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~   72 (250)
                      +|++|+.....      .+.+++ .|.++|+.+....+++ .|+++|.|-+|++|+...+  -+..++. .         
T Consensus        48 ~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~~~c~stir-~---------  115 (735)
T KOG0308|consen   48 IIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDNTFCMSTIR-T---------  115 (735)
T ss_pred             eEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCcchhHhhhh-c---------
Confidence            47899876322      367788 9999999999999998 7999999999999999876  4555555 2         


Q ss_pred             cccCCCceeEEec-CCCcccCCCCCEEEEEeCCCeEEEEeCCCcee--Eee--------ccCCCCCCccceeecccceeE
Q 025649           73 QCYNPAFVHAIAI-PDADMLDKTNKICVVAKGDGVVDVINIESELN--ISR--------SKSTTKPLKGSQSTSKVNIRD  141 (250)
Q Consensus        73 ~~~~~~~v~~~~~-~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~  141 (250)
                         |.+.|.|+++ .+      +..++|+|+-|+.|.+||++++..  ...        ........+.+++.++.|..+
T Consensus       116 ---H~DYVkcla~~ak------~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i  186 (735)
T KOG0308|consen  116 ---HKDYVKCLAYIAK------NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII  186 (735)
T ss_pred             ---ccchheeeeeccc------CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence               6899999999 54      888999999999999999997632  221        122345678899999999777


Q ss_pred             EEee---eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc
Q 025649          142 AEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL  218 (250)
Q Consensus       142 ~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  218 (250)
                      +..+   ....++.+..+.+..++||...|.++..+   ++|+.++++|.||+|++||+...         .++..+..|
T Consensus       187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~---dDGt~~ls~sSDgtIrlWdLgqQ---------rCl~T~~vH  254 (735)
T KOG0308|consen  187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVN---DDGTRLLSASSDGTIRLWDLGQQ---------RCLATYIVH  254 (735)
T ss_pred             EecCcccceEEeccccccceeeeeccccceEEEEEc---CCCCeEeecCCCceEEeeecccc---------ceeeeEEec
Confidence            7422   23334555566677888999999999999   89999999999999999999997         677789999


Q ss_pred             CCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          219 NKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ...|+++..+| +-+++++|+.||.|..=|+
T Consensus       255 ~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl  284 (735)
T KOG0308|consen  255 KEGVWALQSSP-SFTHVYSGGRDGNIYRTDL  284 (735)
T ss_pred             cCceEEEeeCC-CcceEEecCCCCcEEeccc
Confidence            99999999886 7778999999999987655

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=4.3e-26  Score=163.72  Aligned_cols=178  Identities=16%  Similarity=0.269  Sum_probs=145.5

Q ss_pred             ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649           10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD   89 (250)
Q Consensus        10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (250)
                      .+.+.++. +|...=..|+|||-....|+||..-+.|++|...+|.-.    ..      ...+..|...|..++|+|  
T Consensus       201 ~~Pl~t~~-ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~----vd------~~Pf~gH~~SVEDLqWSp--  267 (440)
T KOG0302|consen  201 FRPLFTFN-GHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK----VD------QRPFTGHTKSVEDLQWSP--  267 (440)
T ss_pred             cCceEEec-ccCccceeeecccccccccccCccccceEeeeeccCcee----ec------CccccccccchhhhccCC--
Confidence            34667788 999999999999955446999999999999999876421    11      112223788999999999  


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEE
Q 025649           90 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS  169 (250)
Q Consensus        90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  169 (250)
                         .....|++|+.||+|+|||++.+....                                     ++ ..++|...|+
T Consensus       268 ---tE~~vfaScS~DgsIrIWDiRs~~~~~-------------------------------------~~-~~kAh~sDVN  306 (440)
T KOG0302|consen  268 ---TEDGVFASCSCDGSIRIWDIRSGPKKA-------------------------------------AV-STKAHNSDVN  306 (440)
T ss_pred             ---ccCceEEeeecCceEEEEEecCCCccc-------------------------------------ee-EeeccCCcee
Confidence               578899999999999999999753111                                     11 2267999999


Q ss_pred             EEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          170 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       170 ~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .|.|+   .+-.+||+|+.||+++|||++..+..      .++..+.-|..+|+++.|+|.+...|++++.|..|.+||+
T Consensus       307 VISWn---r~~~lLasG~DdGt~~iwDLR~~~~~------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  307 VISWN---RREPLLASGGDDGTLSIWDLRQFKSG------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             eEEcc---CCcceeeecCCCceEEEEEhhhccCC------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence            99999   77779999999999999999986543      6677899999999999999988889999999999999998


Q ss_pred             C
Q 025649          250 S  250 (250)
Q Consensus       250 ~  250 (250)
                      +
T Consensus       378 s  378 (440)
T KOG0302|consen  378 S  378 (440)
T ss_pred             e
Confidence            4

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.4e-24  Score=151.44  Aligned_cols=213  Identities=11%  Similarity=0.069  Sum_probs=167.7

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC--CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL--DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|+|||..+++.++++. .+.-.|..++|..... .++.++.  |.+||.-++.+.+.++.|. |            |..
T Consensus        37 sl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~dNkylRYF~-G------------H~~  101 (311)
T KOG1446|consen   37 SLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLHDNKYLRYFP-G------------HKK  101 (311)
T ss_pred             eEEEEEcCCCceeeEee-cccccccEEEEecCCc-eEEEccCCCCCceEEEEeecCceEEEcC-C------------CCc
Confidence            58999999999999999 8888899999977666 4555555  8899999999999999998 5            789


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccC
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGG  152 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  152 (250)
                      .|.++..+|      -+..+++++.|++|++||++..++...+..   ......+|+|+|.+++.      +...|.+.-
T Consensus       102 ~V~sL~~sP------~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~  172 (311)
T KOG1446|consen  102 RVNSLSVSP------KDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---SGRPIAAFDPEGLIFALANGSELIKLYDLRSF  172 (311)
T ss_pred             eEEEEEecC------CCCeEEecccCCeEEeeEecCCCCceEEec---CCCcceeECCCCcEEEEecCCCeEEEEEeccc
Confidence            999999999      779999999999999999998776655544   34567899999999985      223333321


Q ss_pred             --eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCc---eeEEEe
Q 025649          153 --KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK---VNWLCT  227 (250)
Q Consensus       153 --~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~  227 (250)
                        .+......-.+.....+.+.||   |+|++++.+...+.+++.|.-.|         .++..+..+...   ....+|
T Consensus       173 dkgPF~tf~i~~~~~~ew~~l~FS---~dGK~iLlsT~~s~~~~lDAf~G---------~~~~tfs~~~~~~~~~~~a~f  240 (311)
T KOG1446|consen  173 DKGPFTTFSITDNDEAEWTDLEFS---PDGKSILLSTNASFIYLLDAFDG---------TVKSTFSGYPNAGNLPLSATF  240 (311)
T ss_pred             CCCCceeEccCCCCccceeeeEEc---CCCCEEEEEeCCCcEEEEEccCC---------cEeeeEeeccCCCCcceeEEE
Confidence              1222111112446678999999   99999999999999999999998         444555555432   245567


Q ss_pred             cCCCCCeEEEeeCCceEEEEeCC
Q 025649          228 TPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       228 ~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .| |++++++|+.||+|.+|+++
T Consensus       241 tP-ds~Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  241 TP-DSKFVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             CC-CCcEEEEecCCCcEEEEEcC
Confidence            77 99999999999999999974

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.3e-25  Score=150.71  Aligned_cols=222  Identities=19%  Similarity=0.171  Sum_probs=165.6

Q ss_pred             CcEEEEcccc---eeeeeeccCCCCCeeeEEEcC--CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649            1 MWQIIDIRQH---CLYKSLRAGHSSICSSVQFIP--WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         1 ti~iwd~~~~---~~~~~l~~~h~~~v~~l~~~~--~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      ||+|+..+.+   +++.+|. ||.++|..++|..  .|. +|++++.||.|.||.-.+++-.+...           ...
T Consensus        34 tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~g~w~k~~e-----------~~~  100 (299)
T KOG1332|consen   34 TVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEENGRWTKAYE-----------HAA  100 (299)
T ss_pred             cEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCc-EeeEeecCceEEEEecCCCchhhhhh-----------hhh
Confidence            6899998743   5788999 9999999999964  677 99999999999999998885433332           123


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc--eeEeeccCCCCCCccceeeccc---c-----------e
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE--LNISRSKSTTKPLKGSQSTSKV---N-----------I  139 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~---~-----------~  139 (250)
                      |...|++++|.|    +..|-.|++++.||.|.+.+.++.  -....+...+...+.++++.|.   |           +
T Consensus       101 h~~SVNsV~wap----heygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~k  176 (299)
T KOG1332|consen  101 HSASVNSVAWAP----HEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVK  176 (299)
T ss_pred             hcccceeecccc----cccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccc
Confidence            678999999999    345778999999999999988763  3445556666788999999886   4           2


Q ss_pred             eEEEeeeeeec-------cCeeeeeeccccCccccEEEEEeecCCC-CCcEEEEeeCCCeEEEEecCCCcceecccccce
Q 025649          140 RDAEMEILDQS-------GGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL  211 (250)
Q Consensus       140 ~~~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  211 (250)
                      .++ .+..|..       .. .-..-+++.+|.+.|..++|.|... -..+++++|+||++.||-.+.....      ..
T Consensus       177 rlv-SgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~------wk  248 (299)
T KOG1332|consen  177 RLV-SGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP------WK  248 (299)
T ss_pred             eee-ccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc------cc
Confidence            344 3332222       22 2223356899999999999996211 1258999999999999987743221      12


Q ss_pred             eeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          212 LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       212 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      ...+......++.+.|+. .|.+|+.++.|++|.+|.
T Consensus       249 ~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  249 KTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             ccccccCCcceEEEEEec-cccEEEEecCCcEEEEEE
Confidence            223344667899999997 889999999999999995

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=6.4e-25  Score=171.97  Aligned_cols=197  Identities=14%  Similarity=0.148  Sum_probs=144.6

Q ss_pred             CcEEEEcccc-------eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649            1 MWQIIDIRQH-------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         1 ti~iwd~~~~-------~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~   73 (250)
                      +|++||+.++       +.+..+. +|...|.+++|+|++..+|++|+.|++|+|||+++++.+..+. .          
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~----------  166 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-C----------  166 (493)
T ss_pred             EEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-C----------
Confidence            5899999765       3467788 9999999999999874489999999999999999988776665 2          


Q ss_pred             ccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-------
Q 025649           74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-------  146 (250)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  146 (250)
                        |...|.+++|+|      ++++|++++.|+.|++||+++++.......+.......+.|.+++..+++.+.       
T Consensus       167 --h~~~V~sla~sp------dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~  238 (493)
T PTZ00421        167 --HSDQITSLEWNL------DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ  238 (493)
T ss_pred             --CCCceEEEEEEC------CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence              567899999999      99999999999999999999988777766554445556778888777775431       


Q ss_pred             eeeccCeee-eeeccccC-ccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCcceecccccceeeee-eccCCce
Q 025649          147 LDQSGGKRL-HLDYSVGG-HTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKN-INLNKKV  222 (250)
Q Consensus       147 ~~~~~~~~~-~~~~~~~~-h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v  222 (250)
                      ...++.... .++..... +...+....|+   +++++|++++ .|+.|++||+.++.         ++... ..+..++
T Consensus       239 VklWDlr~~~~p~~~~~~d~~~~~~~~~~d---~d~~~L~lggkgDg~Iriwdl~~~~---------~~~~~~~~s~~~~  306 (493)
T PTZ00421        239 IMLWDTRKMASPYSTVDLDQSSALFIPFFD---EDTNLLYIGSKGEGNIRCFELMNER---------LTFCSSYSSVEPH  306 (493)
T ss_pred             EEEEeCCCCCCceeEeccCCCCceEEEEEc---CCCCEEEEEEeCCCeEEEEEeeCCc---------eEEEeeccCCCCC
Confidence            222222211 12222222 23345556677   8899988887 59999999999873         22222 2344566


Q ss_pred             eEEEecC
Q 025649          223 NWLCTTP  229 (250)
Q Consensus       223 ~~~~~~~  229 (250)
                      ..+++.|
T Consensus       307 ~g~~~~p  313 (493)
T PTZ00421        307 KGLCMMP  313 (493)
T ss_pred             cceEecc
Confidence            7777776

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.5e-25  Score=158.10  Aligned_cols=225  Identities=15%  Similarity=0.190  Sum_probs=170.0

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC----CCCc--cce---------ecCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK----GRPN--KIV---------NFGLP   65 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~----~~~~--~~~---------~~~~~   65 (250)
                      |.+||.+++++++.++. ||.+.|++++|++.+. ++++++.|++-.||...-    .+..  ...         ..+.+
T Consensus       171 TA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~  248 (481)
T KOG0300|consen  171 TARIWSLESGACLATYT-GHTGSVNSIKFHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNR  248 (481)
T ss_pred             ceeEEeeccccceeeec-ccccceeeEEeccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccc
Confidence            56899999999999999 9999999999999999 999999999999997321    1100  000         00000


Q ss_pred             CCC------------CCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCcccee
Q 025649           66 ENN------------GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS  133 (250)
Q Consensus        66 ~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  133 (250)
                      +..            +...+..|...|.+..|-.      .++.+++++.|.+..+||++++..+..+..+. .....+.
T Consensus       249 d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~------gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd-~ELtHcs  321 (481)
T KOG0300|consen  249 DTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA------GGQQMVTASWDRTANLWDVETGEVVNILTGHD-SELTHCS  321 (481)
T ss_pred             ccccccccCCceeeeeeeeeeccccceEehhhhc------CcceeeeeeccccceeeeeccCceeccccCcc-hhccccc
Confidence            000            0112233566666777766      79999999999999999999999887766653 6778888


Q ss_pred             ecccceeEEE------eeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccc
Q 025649          134 TSKVNIRDAE------MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI  207 (250)
Q Consensus       134 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  207 (250)
                      -+|..+++++      ...||..  +..+.+..|+||...|+++.|.    .+..+++|+.|.+|++||+++..      
T Consensus       322 tHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS~vF~----~dd~vVSgSDDrTvKvWdLrNMR------  389 (481)
T KOG0300|consen  322 THPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTSVVFN----TDDRVVSGSDDRTVKVWDLRNMR------  389 (481)
T ss_pred             cCCcceEEEEeccCceeEeccch--hhcceeeeecccccceeEEEEe----cCCceeecCCCceEEEeeecccc------
Confidence            8999988885      2344444  4556678899999999999998    45789999999999999999973      


Q ss_pred             ccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          208 NNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       208 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                         ......-..++++.++.+. .+.+|+.--.++.|++||++
T Consensus       390 ---splATIRtdS~~NRvavs~-g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  390 ---SPLATIRTDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             ---CcceeeecCCccceeEeec-CCceEEeccCCceEEEEecC
Confidence               2223344566788888874 55678888888999999985

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.4e-25  Score=174.22  Aligned_cols=221  Identities=12%  Similarity=0.077  Sum_probs=157.7

Q ss_pred             eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc-----------------------c----cee----
Q 025649           13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN-----------------------K----IVN----   61 (250)
Q Consensus        13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-----------------------~----~~~----   61 (250)
                      .+.+..+|.+.|.++.||+||+ |||+|+.||.|+||.+...+..                       .    ...    
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            3445458999999999999999 9999999999999998651100                       0    000    


Q ss_pred             ---cC--CCC-----------CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCC
Q 025649           62 ---FG--LPE-----------NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT  125 (250)
Q Consensus        62 ---~~--~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  125 (250)
                         .+  .+.           ..+......|.+.|..+.|+       .+++|++++.|.+|+||++....++..+... 
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-------Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn-  409 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-------KNNFLLSSSMDKTVRLWHPGRKECLKVFSHN-  409 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccc-------cCCeeEeccccccEEeecCCCcceeeEEecC-
Confidence               00  000           00112233477788889998       5889999999999999999999999988776 


Q ss_pred             CCCccceeeccc-ceeEEEeeeeeeccC----eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649          126 KPLKGSQSTSKV-NIRDAEMEILDQSGG----KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  200 (250)
Q Consensus       126 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~  200 (250)
                       ..|+|++|+|. .++++ .|+.|+...    ...+.+.-... ..-|++++|.   |+|++.+.|+.+|.+++|+....
T Consensus       410 -dfVTcVaFnPvDDryFi-SGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~---PdGk~avIGt~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  410 -DFVTCVAFNPVDDRYFI-SGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYS---PDGKGAVIGTFNGYCRFYDTEGL  483 (712)
T ss_pred             -CeeEEEEecccCCCcEe-ecccccceEEeecCcCeeEeehhh-hhhheeEEec---cCCceEEEEEeccEEEEEEccCC
Confidence             79999999995 55555 666665432    22232223333 3779999999   89999999999999999999887


Q ss_pred             cceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          201 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +-....+-.-.-..-..|. .|+.+.+.|.+...+++.+.|..|+|||.
T Consensus       484 k~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  484 KLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             eEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence            5432110000000111233 89999999877777888888999999997

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=2.1e-25  Score=155.71  Aligned_cols=222  Identities=16%  Similarity=0.132  Sum_probs=158.1

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc--cceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN--KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK   96 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (250)
                      .|.+.|+++.+.+....++++|+.||.+.+||+++....  .-+.....-.....-...|.-.|.++.|.|     .|..
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP-----~DtG  115 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYP-----IDTG  115 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEee-----ecCc
Confidence            689999999999865459999999999999999754310  000000000000001112455666666766     6888


Q ss_pred             EEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccc--eeEEEeeeeeec----cCeeeeeeccccCccccEEE
Q 025649           97 ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN--IRDAEMEILDQS----GGKRLHLDYSVGGHTAAASC  170 (250)
Q Consensus        97 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~  170 (250)
                      .+.+++.|.++++||..+-+....+..+  ..+.+-+++|-.  ..+++++..+..    +.....+-+.+.||.+.|.+
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~~F~me--~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAVDFKME--GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA  193 (397)
T ss_pred             eeecccccceEEEeecccceeeEEeecC--ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence            9999999999999999998887777665  567777777743  233334443333    23455567889999999999


Q ss_pred             EEeecCCCCCcEEEEeeCCCeEEEEecCCCc-cee-----cccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649          171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQ-GVQ-----TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV  244 (250)
Q Consensus       171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  244 (250)
                      +.|+|  ...-.|++|+.||.|++||++... +..     ....++.+.....|.+.|+.++|.+ ++.++++++.|..+
T Consensus       194 V~Wsp--~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~  270 (397)
T KOG4283|consen  194 VEWSP--SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRI  270 (397)
T ss_pred             EEecc--CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhhhhccCccce
Confidence            99995  344567899999999999998752 211     1122344445678999999999997 99999999999999


Q ss_pred             EEEeCC
Q 025649          245 KVYSIS  250 (250)
Q Consensus       245 ~vw~~~  250 (250)
                      ++|+.+
T Consensus       271 r~wn~~  276 (397)
T KOG4283|consen  271 RVWNME  276 (397)
T ss_pred             EEeecc
Confidence            999863

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=8.5e-27  Score=164.90  Aligned_cols=214  Identities=14%  Similarity=0.127  Sum_probs=173.5

Q ss_pred             cEEEEcccceeeeeecc-------CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcc
Q 025649            2 WQIIDIRQHCLYKSLRA-------GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQC   74 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~-------~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~   74 (250)
                      |.+||..+|++.+.++.       -+..+|.|+.|+.|.. +|++|+.||.|++|.+++|.+++.|...           
T Consensus       237 iEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~tG~ClRrFdrA-----------  304 (508)
T KOG0275|consen  237 IEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIETGQCLRRFDRA-----------  304 (508)
T ss_pred             eeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEEEEEecchHHHHhhhh-----------
Confidence            67999999987765542       4678999999999999 9999999999999999999999999855           


Q ss_pred             cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe---eeeeecc
Q 025649           75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSG  151 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  151 (250)
                       |...|+++.|+.      |+..+++++.|.++++.-+.+|+++..+..+. ..+....|+++|..+++.   |....|.
T Consensus       305 -HtkGvt~l~FSr------D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs-Syvn~a~ft~dG~~iisaSsDgtvkvW~  376 (508)
T KOG0275|consen  305 -HTKGVTCLSFSR------DNSQILSASFDQTVRIHGLKSGKCLKEFRGHS-SYVNEATFTDDGHHIISASSDGTVKVWH  376 (508)
T ss_pred             -hccCeeEEEEcc------CcchhhcccccceEEEeccccchhHHHhcCcc-ccccceEEcCCCCeEEEecCCccEEEec
Confidence             789999999998      99999999999999999999999999888774 789999999999999841   2222222


Q ss_pred             Ceeeeee--------------------------------------------ccccC---ccccEEEEEeecCCCCCcEEE
Q 025649          152 GKRLHLD--------------------------------------------YSVGG---HTAAASCVAFSMFGERGKYLI  184 (250)
Q Consensus       152 ~~~~~~~--------------------------------------------~~~~~---h~~~v~~~~~~p~~~~~~~l~  184 (250)
                      .+..+++                                            +.+..   ..+...+...+   |.|.++.
T Consensus       377 ~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lS---pkGewiY  453 (508)
T KOG0275|consen  377 GKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILS---PKGEWIY  453 (508)
T ss_pred             CcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEec---CCCcEEE
Confidence            2111111                                            12211   12233455567   8899999


Q ss_pred             EeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          185 SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       185 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      +.++|+.++.|...++         .+-..+.-|+..|..++-+| ..+.+++-+.||.+++|.
T Consensus       454 cigED~vlYCF~~~sG---------~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  454 CIGEDGVLYCFSVLSG---------KLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEccCcEEEEEEeecC---------ceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence            9999999999999988         66667788999999999998 667899999999999995

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.7e-25  Score=165.26  Aligned_cols=213  Identities=19%  Similarity=0.196  Sum_probs=173.7

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      +.||+..+....+++. .....|.++.|..||+ +|+.|+..|.|+++|..+...++.+..             |..+++
T Consensus        50 vqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~iLR~~~a-------------h~apv~  114 (487)
T KOG0310|consen   50 VQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSRVILRQLYA-------------HQAPVH  114 (487)
T ss_pred             EEEEecchhhhhhhHH-hhccceeEEEeecCCe-EEEccCCcCcEEEeccccHHHHHHHhh-------------ccCcee
Confidence            6788888877777777 7888999999999999 999999999999999766445566653             578999


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC----eee-e
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG----KRL-H  156 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~  156 (250)
                      ...|+|     .++..+++|+.|+.+++||+.+......+.. +...+.+.+++|.+..++..|++|+...    +.. .
T Consensus       115 ~~~f~~-----~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~  188 (487)
T KOG0310|consen  115 VTKFSP-----QDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS  188 (487)
T ss_pred             EEEecc-----cCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc
Confidence            999999     5788899999999999999999886334444 4588999999999887776777666542    211 3


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      .+.++ .|..+|..+.+-   |.|..+++++ ...|++||+-++.        +.+.....|...|+++++.. ++..|+
T Consensus       189 ~v~el-nhg~pVe~vl~l---psgs~iasAg-Gn~vkVWDl~~G~--------qll~~~~~H~KtVTcL~l~s-~~~rLl  254 (487)
T KOG0310|consen  189 RVVEL-NHGCPVESVLAL---PSGSLIASAG-GNSVKVWDLTTGG--------QLLTSMFNHNKTVTCLRLAS-DSTRLL  254 (487)
T ss_pred             eeEEe-cCCCceeeEEEc---CCCCEEEEcC-CCeEEEEEecCCc--------eehhhhhcccceEEEEEeec-CCceEe
Confidence            33444 488999999999   8889999987 4689999999763        45555566999999999997 889999


Q ss_pred             EeeCCceEEEEeC
Q 025649          237 VCDTSKVVKVYSI  249 (250)
Q Consensus       237 s~~~d~~i~vw~~  249 (250)
                      +|+-|+.+++||+
T Consensus       255 S~sLD~~VKVfd~  267 (487)
T KOG0310|consen  255 SGSLDRHVKVFDT  267 (487)
T ss_pred             ecccccceEEEEc
Confidence            9999999999985

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.7e-25  Score=164.49  Aligned_cols=194  Identities=18%  Similarity=0.199  Sum_probs=155.0

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC---------CCCccceecCCCCCCCCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK---------GRPNKIVNFGLPENNGNAG   72 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~---------~~~~~~~~~~~~~~~~~~~   72 (250)
                      |++|.+.+|+++..+. +|-..|+|+.|+.||. +|+|||.||.|.+|.+.+         -++++.|.           
T Consensus       105 lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-----------  171 (476)
T KOG0646|consen  105 LYLWELSSGILLNVLS-AHYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-----------  171 (476)
T ss_pred             EEEEEeccccHHHHHH-hhccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccceeeec-----------
Confidence            7899999999999999 9999999999999999 999999999999998743         12333333           


Q ss_pred             cccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC
Q 025649           73 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG  152 (250)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (250)
                        -|.-.|+.+.+.+    .+...++++++.|.++++||+..+..+..+..+  ..+.+++.+|-...+. +|..++...
T Consensus       172 --~HtlsITDl~ig~----Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp--~si~av~lDpae~~~y-iGt~~G~I~  242 (476)
T KOG0646|consen  172 --DHTLSITDLQIGS----GGTNARLYTASEDRTIKLWDLSLGVLLLTITFP--SSIKAVALDPAERVVY-IGTEEGKIF  242 (476)
T ss_pred             --cCcceeEEEEecC----CCccceEEEecCCceEEEEEeccceeeEEEecC--CcceeEEEcccccEEE-ecCCcceEE
Confidence              3677899988876    124579999999999999999999988887776  7899999999888777 444333210


Q ss_pred             --------------------eeeeeeccccCccc--cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccc
Q 025649          153 --------------------KRLHLDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND  210 (250)
Q Consensus       153 --------------------~~~~~~~~~~~h~~--~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  210 (250)
                                          .....+..+.||.+  .|+|++++   -||.+|++|+.||.++|||..+.+         
T Consensus       243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais---~DgtlLlSGd~dg~VcvWdi~S~Q---------  310 (476)
T KOG0646|consen  243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS---TDGTLLLSGDEDGKVCVWDIYSKQ---------  310 (476)
T ss_pred             eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe---cCccEEEeeCCCCCEEEEecchHH---------
Confidence                                12233456778988  99999999   899999999999999999999984         


Q ss_pred             eeeeeeccCCceeEEEecC
Q 025649          211 LLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       211 ~~~~~~~~~~~v~~~~~~~  229 (250)
                      +++......++|+.+.+.|
T Consensus       311 ~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  311 CIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             HHHHHhhhccccceeEeec
Confidence            4444444566777777754

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=3e-24  Score=169.29  Aligned_cols=199  Identities=12%  Similarity=0.027  Sum_probs=140.1

Q ss_pred             CcEEEEcccce--------eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCC
Q 025649            1 MWQIIDIRQHC--------LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAG   72 (250)
Q Consensus         1 ti~iwd~~~~~--------~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~   72 (250)
                      +|+|||+.++.        .+..+. +|...|.+++|+|++..+|++++.|++|++||+++++.+..+.           
T Consensus        98 tIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-----------  165 (568)
T PTZ00420         98 TIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-----------  165 (568)
T ss_pred             eEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-----------
Confidence            58999997542        344678 9999999999999998567899999999999999888666554           


Q ss_pred             cccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCC----ccceeecccceeEEEeeee-
Q 025649           73 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL----KGSQSTSKVNIRDAEMEIL-  147 (250)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-  147 (250)
                         +...|.+++|+|      +|++|++++.|+.|++||+++++.+..+..+....    +....|++++.++++.+.. 
T Consensus       166 ---~~~~V~Slswsp------dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~  236 (568)
T PTZ00420        166 ---MPKKLSSLKWNI------KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK  236 (568)
T ss_pred             ---cCCcEEEEEECC------CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC
Confidence               346799999999      99999999999999999999998877666554321    2223456888888864422 


Q ss_pred             ------eeccCe-eeeeecc--ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc
Q 025649          148 ------DQSGGK-RLHLDYS--VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL  218 (250)
Q Consensus       148 ------~~~~~~-~~~~~~~--~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  218 (250)
                            ..++.. ...++..  +..+.+.+......   ++|.++++|+.|+.|++|++..+..       ..+. ...+
T Consensus       237 ~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~---~tg~l~lsGkGD~tIr~~e~~~~~~-------~~l~-~~~s  305 (568)
T PTZ00420        237 NNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE---STGLIYLIGKGDGNCRYYQHSLGSI-------RKVN-EYKS  305 (568)
T ss_pred             CCccEEEEEECCCCCCceEEEEecCCccceEEeeeC---CCCCEEEEEECCCeEEEEEccCCcE-------Eeec-cccc
Confidence                  222222 1222222  23333333333223   6689999999999999999987521       1122 2235


Q ss_pred             CCceeEEEecCCC
Q 025649          219 NKKVNWLCTTPTE  231 (250)
Q Consensus       219 ~~~v~~~~~~~~~  231 (250)
                      ..+..+++|.|..
T Consensus       306 ~~p~~g~~f~Pkr  318 (568)
T PTZ00420        306 CSPFRSFGFLPKQ  318 (568)
T ss_pred             CCCccceEEcccc
Confidence            6677888888843

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=5.2e-25  Score=153.93  Aligned_cols=205  Identities=14%  Similarity=0.151  Sum_probs=149.2

Q ss_pred             CcEEEEccc-ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~-~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      |||+|+++. |..+.+-...|.++|.+++|+.+|. .+++|+.|+.+++||+.+++....-.              |..+
T Consensus        51 tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S~Q~~~v~~--------------Hd~p  115 (347)
T KOG0647|consen   51 TVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLASGQVSQVAA--------------HDAP  115 (347)
T ss_pred             ceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccCCCeeeeee--------------cccc
Confidence            699999985 5655544448999999999999998 89999999999999999996544433              6889


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC-----------------------------------
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-----------------------------------  124 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----------------------------------  124 (250)
                      |..+.|-+.    ..-..|++|+.|++|++||++....+..+..+                                   
T Consensus       116 vkt~~wv~~----~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k  191 (347)
T KOG0647|consen  116 VKTCHWVPG----MNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFK  191 (347)
T ss_pred             eeEEEEecC----CCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhh
Confidence            999998861    13358999999999999999986544433322                                   


Q ss_pred             -----CCCCccceeecccceeEEEeeeeeeccC------eeeeeeccccCcc---------ccEEEEEeecCCCCCcEEE
Q 025649          125 -----TKPLKGSQSTSKVNIRDAEMEILDQSGG------KRLHLDYSVGGHT---------AAASCVAFSMFGERGKYLI  184 (250)
Q Consensus       125 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~h~---------~~v~~~~~~p~~~~~~~l~  184 (250)
                           .+-.+++++..++....+ +|...++..      ...+.-..|+.|.         ..|++|+|+   |....|+
T Consensus       192 ~~~SpLk~Q~R~va~f~d~~~~a-lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh---P~hgtlv  267 (347)
T KOG0647|consen  192 RIESPLKWQTRCVACFQDKDGFA-LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH---PVHGTLV  267 (347)
T ss_pred             hhcCcccceeeEEEEEecCCceE-eeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee---cccceEE
Confidence                 122345556555554444 444444321      1112234455554         257889999   6667899


Q ss_pred             EeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649          185 SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC  238 (250)
Q Consensus       185 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  238 (250)
                      |++.||+..+||-...         ..+.....|..+|++..|+. +|.+++-+
T Consensus       268 TaGsDGtf~FWDkdar---------~kLk~s~~~~qpItcc~fn~-~G~ifaYA  311 (347)
T KOG0647|consen  268 TAGSDGTFSFWDKDAR---------TKLKTSETHPQPITCCSFNR-NGSIFAYA  311 (347)
T ss_pred             EecCCceEEEecchhh---------hhhhccCcCCCccceeEecC-CCCEEEEE
Confidence            9999999999998876         44566778999999999996 88887653

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=6.8e-25  Score=150.50  Aligned_cols=203  Identities=12%  Similarity=0.146  Sum_probs=159.0

Q ss_pred             eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649           14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK   93 (250)
Q Consensus        14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (250)
                      +.++ +|...|.+++|+.+|. .|++|+.|+++++|++...+....+...           .|.+.|-.++|.|     +
T Consensus        14 r~~~-~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~~~~-----------gh~~svdql~w~~-----~   75 (313)
T KOG1407|consen   14 RELQ-GHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKELVYR-----------GHTDSVDQLCWDP-----K   75 (313)
T ss_pred             HHhh-hhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhhccc-----------CCCcchhhheeCC-----C
Confidence            4566 8999999999999999 8999999999999999877554444322           2667788888888     6


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec---cCeeeeeeccccCccccEEE
Q 025649           94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS---GGKRLHLDYSVGGHTAAASC  170 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~  170 (250)
                      ....+++++.|.+|++||.+.+++.......  ..-.-+.|+|+|.+++..+-.|..   +.+..+.+...+ ....+..
T Consensus        76 ~~d~~atas~dk~ir~wd~r~~k~~~~i~~~--~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne  152 (313)
T KOG1407|consen   76 HPDLFATASGDKTIRIWDIRSGKCTARIETK--GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNE  152 (313)
T ss_pred             CCcceEEecCCceEEEEEeccCcEEEEeecc--CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeee
Confidence            8899999999999999999999988777665  556678999999999843322221   122222222222 3345778


Q ss_pred             EEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +.|+   .++++++....-|+|.|-.....         +++..+.+|.....++.|.| +|++||+|+.|..+.+||+.
T Consensus       153 ~~w~---~~nd~Fflt~GlG~v~ILsypsL---------kpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~  219 (313)
T KOG1407|consen  153 ISWN---NSNDLFFLTNGLGCVEILSYPSL---------KPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVD  219 (313)
T ss_pred             eeec---CCCCEEEEecCCceEEEEecccc---------ccccccccCCcceEEEEECC-CCceEeeccccceeeccChh
Confidence            8888   55666666666799999999987         67788899999999999998 99999999999999999973

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=9.6e-24  Score=142.51  Aligned_cols=213  Identities=12%  Similarity=0.119  Sum_probs=151.7

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCC----------
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA----------   88 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------   88 (250)
                      .|.+.|.|.+|+|+|+ +|++|+.|.+|++..++...+..+-.        ...+..|...|..++|-..          
T Consensus        87 hhkgsiyc~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~--------dle~nmhdgtirdl~fld~~~s~~~il~s  157 (350)
T KOG0641|consen   87 HHKGSIYCTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGH--------DLEFNMHDGTIRDLAFLDDPESGGAILAS  157 (350)
T ss_pred             ccCccEEEEEecCccC-eEEecCCCceEEEEecccccccccCc--------ceeeeecCCceeeeEEecCCCcCceEEEe
Confidence            6889999999999999 99999999999998765332211100        0000012222222222110          


Q ss_pred             ------------------------------cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC------CCCCccce
Q 025649           89 ------------------------------DMLDKTNKICVVAKGDGVVDVINIESELNISRSKST------TKPLKGSQ  132 (250)
Q Consensus        89 ------------------------------~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------~~~~~~~~  132 (250)
                                                    ..+.-++-.+++|++|.+|++||++-..+.......      +...+..+
T Consensus       158 ~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav  237 (350)
T KOG0641|consen  158 AGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV  237 (350)
T ss_pred             cCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence                                          011126788999999999999999987766554322      22568889


Q ss_pred             eecccceeEEEeeeee----eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccc
Q 025649          133 STSKVNIRDAEMEILD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN  208 (250)
Q Consensus       133 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  208 (250)
                      +..|.|+++++ |..|    ..+.+..+.++.+..|...|.|+.|+   |...|+++++.|..|++-|++..-..+    
T Consensus       238 ~vdpsgrll~s-g~~dssc~lydirg~r~iq~f~phsadir~vrfs---p~a~yllt~syd~~ikltdlqgdla~e----  309 (350)
T KOG0641|consen  238 AVDPSGRLLAS-GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS---PGAHYLLTCSYDMKIKLTDLQGDLAHE----  309 (350)
T ss_pred             EECCCcceeee-ccCCCceEEEEeeCCceeeeeCCCccceeEEEeC---CCceEEEEecccceEEEeecccchhhc----
Confidence            99999999994 3322    22344556677899999999999999   889999999999999999998642211    


Q ss_pred             cceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          209 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                       -.+.....|...+..+.|+|.+ -.+++.+.|.++.+|-++
T Consensus       310 -l~~~vv~ehkdk~i~~rwh~~d-~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  310 -LPIMVVAEHKDKAIQCRWHPQD-FSFISSSADKTATLWALN  349 (350)
T ss_pred             -CceEEEEeccCceEEEEecCcc-ceeeeccCcceEEEeccC
Confidence             2344567899999999999954 458889999999999764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=1.7e-24  Score=158.08  Aligned_cols=195  Identities=15%  Similarity=0.159  Sum_probs=161.2

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      ..+.++...|..+ .+++|+.|.++.++|..+++.+..++ +            |...|..+.++|      +...++++
T Consensus       220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~~~-G------------h~kki~~v~~~~------~~~~v~~a  279 (506)
T KOG0289|consen  220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILATLK-G------------HTKKITSVKFHK------DLDTVITA  279 (506)
T ss_pred             CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhhcc-C------------cceEEEEEEecc------chhheeec
Confidence            4688888888855 89999999999999999999999988 4            688999999998      89999999


Q ss_pred             eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe---eeeeeccCeeeeeecccc--CccccEEEEEeecC
Q 025649          102 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSGGKRLHLDYSVG--GHTAAASCVAFSMF  176 (250)
Q Consensus       102 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~  176 (250)
                      +.|..|++|............ .+...++.+..+|.|.|++..   +.|-..+......+....  ...-.+++.+|+  
T Consensus       280 Sad~~i~vws~~~~s~~~~~~-~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH--  356 (506)
T KOG0289|consen  280 SADEIIRVWSVPLSSEPTSSR-PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH--  356 (506)
T ss_pred             CCcceEEeeccccccCccccc-cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc--
Confidence            999999999998766444333 345889999999999999852   334444433333333322  233458999999  


Q ss_pred             CCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          177 GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       177 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                       |||.+|.+|..|+.|+|||+.+.         .-...+.+|+++|..+.|+. +|.+|++++.|+.|++||+|
T Consensus       357 -pDgLifgtgt~d~~vkiwdlks~---------~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLR  419 (506)
T KOG0289|consen  357 -PDGLIFGTGTPDGVVKIWDLKSQ---------TNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLR  419 (506)
T ss_pred             -CCceEEeccCCCceEEEEEcCCc---------cccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEeh
Confidence             99999999999999999999997         45567889999999999996 99999999999999999986

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=1.1e-24  Score=153.17  Aligned_cols=215  Identities=16%  Similarity=0.302  Sum_probs=167.3

Q ss_pred             eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649           12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML   91 (250)
Q Consensus        12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   91 (250)
                      .+++|. .|.+.|+++.|+|... +|++|+.|++|+++|+......+.++.-           -....|.++.|+|    
T Consensus       164 vIRTlY-DH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~-----------qd~~~vrsiSfHP----  226 (430)
T KOG0640|consen  164 VIRTLY-DHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVF-----------QDTEPVRSISFHP----  226 (430)
T ss_pred             eEeehh-hccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHh-----------hccceeeeEeecC----
Confidence            467787 8999999999999998 9999999999999999765443333211           0346799999999    


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCceeEeec--cCCCCCCccceeecccceeEEE---eeeeeeccCeeeeeecccc-Ccc
Q 025649           92 DKTNKICVVAKGDGVVDVINIESELNISRS--KSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSVG-GHT  165 (250)
Q Consensus        92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~h~  165 (250)
                        .|.+|++|....++++||+++-++....  ...+...+.++.+++.|++.++   .|....+++...+++.++. +|.
T Consensus       227 --sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~  304 (430)
T KOG0640|consen  227 --SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG  304 (430)
T ss_pred             --CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC
Confidence              9999999999999999999997765443  3345578999999999999985   3344455566666777764 454


Q ss_pred             -ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec---------------------------------------
Q 025649          166 -AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT---------------------------------------  205 (250)
Q Consensus       166 -~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---------------------------------------  205 (250)
                       ..|.+..|.   .+|+|+++.+.|..+++|.+.++..+..                                       
T Consensus       305 gsevcSa~Ft---kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWd  381 (430)
T KOG0640|consen  305 GSEVCSAVFT---KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWD  381 (430)
T ss_pred             CceeeeEEEc---cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecc
Confidence             468889999   9999999999999999999988765431                                       


Q ss_pred             ccc-cceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          206 SIN-NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       206 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ... ........+|++.+.++.-+| .+..|++|+.|..+++|--
T Consensus       382 aRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  382 ARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             ccchhhhhhcccCCCCCceEEEeCC-CCCceeeecccceeeeeee
Confidence            000 111123458999999998887 6667999999999999963

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=2.1e-24  Score=158.59  Aligned_cols=205  Identities=18%  Similarity=0.183  Sum_probs=154.7

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      +|...+.+++.++|++ +|++|+.|..|.||+.++.+.++.+. +            |.+.|.+++|..      ....+
T Consensus       200 ~h~keil~~avS~Dgk-ylatgg~d~~v~Iw~~~t~ehv~~~~-g------------hr~~V~~L~fr~------gt~~l  259 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGK-YLATGGRDRHVQIWDCDTLEHVKVFK-G------------HRGAVSSLAFRK------GTSEL  259 (479)
T ss_pred             cccceeEEEEEcCCCc-EEEecCCCceEEEecCcccchhhccc-c------------cccceeeeeeec------Cccce
Confidence            7888999999999999 99999999999999999999998877 4            689999999997      77899


Q ss_pred             EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCe---eeeeeccccCccccEEEEEeec
Q 025649           99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK---RLHLDYSVGGHTAAASCVAFSM  175 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~p  175 (250)
                      ++++.|+.|++|+++....+..+..+. ..+..+....-++.+. +|..|.+..-   +.+....+.+|.+.+.|++|- 
T Consensus       260 ys~s~Drsvkvw~~~~~s~vetlyGHq-d~v~~IdaL~reR~vt-VGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I-  336 (479)
T KOG0299|consen  260 YSASADRSVKVWSIDQLSYVETLYGHQ-DGVLGIDALSRERCVT-VGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI-  336 (479)
T ss_pred             eeeecCCceEEEehhHhHHHHHHhCCc-cceeeechhcccceEE-eccccceeEEEeccccceeeeeCCCCCeeeEEEe-
Confidence            999999999999999766665555553 5555555554444443 4433333210   112223567888899999997 


Q ss_pred             CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee---eccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          176 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN---INLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       176 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                         +...+++||.+|.|.+|++...+.+.+...+..+...   ..+...|++++..| ...++++|+.+|.|++|.++
T Consensus       337 ---n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  337 ---NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             ---cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEec
Confidence               6688999999999999999988655332111111111   12234789999998 77899999999999999763

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1e-24  Score=159.53  Aligned_cols=199  Identities=14%  Similarity=0.159  Sum_probs=153.7

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      +|++.|.+|+|+..-++.|+|||.|.+|++||+.++++..++. .            |.+.|.++.|+|     ....+|
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~------------~~k~Vq~l~wh~-----~~p~~L  302 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-H------------HGKKVQTLEWHP-----YEPSVL  302 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-h------------cCCceeEEEecC-----CCceEE
Confidence            7999999999999888899999999999999999999998887 3            578999999998     578999


Q ss_pred             EEEeCCCeEEEEeCCCce-eEeeccCCCCCCccceeecccceeEEEeeeeeecc-----CeeeeeeccccCccccEEEEE
Q 025649           99 VVAKGDGVVDVINIESEL-NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG-----GKRLHLDYSVGGHTAAASCVA  172 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~  172 (250)
                      ++|+.|++|.+.|++... .......  ...+..++|.|.....+.++.-++..     +...+++.++++|.++|.++.
T Consensus       303 LsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~  380 (463)
T KOG0270|consen  303 LSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS  380 (463)
T ss_pred             EeccccceEEeeeccCccccCceEEe--ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEE
Confidence            999999999999999522 1122222  36788889988776665455444432     234478899999999999999


Q ss_pred             eecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC---ceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          173 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK---KVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       173 ~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +++..|  .+++|++.|+.|++|++......          ....|.-   ...+.++.|...-.++.|+..+.++|||+
T Consensus       381 ~n~~~p--~~l~t~s~d~~Vklw~~~~~~~~----------~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  381 VNIQTP--GLLSTASTDKVVKLWKFDVDSPK----------SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             ecCCCC--cceeeccccceEEEEeecCCCCc----------ccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence            996433  58999999999999998764221          1122221   23445666655667888999999999996

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=6.6e-24  Score=148.75  Aligned_cols=201  Identities=15%  Similarity=0.144  Sum_probs=154.4

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      .|+++|+.++......  .|..+|.||.+++... .+++||.|++|++||.+.......+.              ....|
T Consensus        76 ~vr~~Dln~~~~~~ig--th~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d--------------~~kkV  138 (323)
T KOG1036|consen   76 QVRRYDLNTGNEDQIG--THDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFD--------------QGKKV  138 (323)
T ss_pred             eEEEEEecCCcceeec--cCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccc--------------cCceE
Confidence            3788999888775444  5999999999998777 89999999999999999765555555              34688


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe-eccCCCCCCccceeecccceeEEEeeeeeeccC-------
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG-------  152 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  152 (250)
                      .++...        ++.|++|+.|..+.+||+++..... ......+-.+.++++-|++.-++ .++.+++..       
T Consensus       139 y~~~v~--------g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~-~sSieGRVavE~~d~s  209 (323)
T KOG1036|consen  139 YCMDVS--------GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYV-VSSIEGRVAVEYFDDS  209 (323)
T ss_pred             EEEecc--------CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceE-EEeecceEEEEccCCc
Confidence            888775        7889999999999999999865443 33344457789999999766666 555555531       


Q ss_pred             -eeeeeeccccCcc---------ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCce
Q 025649          153 -KRLHLDYSVGGHT---------AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV  222 (250)
Q Consensus       153 -~~~~~~~~~~~h~---------~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  222 (250)
                       ........|+.|.         -+|++++|+   |-...|+||+.||.|.+||+.+.         +.+..+......|
T Consensus       210 ~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh---p~~~tfaTgGsDG~V~~Wd~~~r---------Krl~q~~~~~~SI  277 (323)
T KOG1036|consen  210 EEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH---PIHGTFATGGSDGIVNIWDLFNR---------KRLKQLAKYETSI  277 (323)
T ss_pred             hHHhhhceeEEeeecccCCceEEEEeceeEec---cccceEEecCCCceEEEccCcch---------hhhhhccCCCCce
Confidence             1112234455554         378999999   66778999999999999999997         5555666667789


Q ss_pred             eEEEecCCCCCeEEEeeC
Q 025649          223 NWLCTTPTESENLVVCDT  240 (250)
Q Consensus       223 ~~~~~~~~~~~~l~s~~~  240 (250)
                      .+++|+. +|..||.++.
T Consensus       278 ~slsfs~-dG~~LAia~s  294 (323)
T KOG1036|consen  278 SSLSFSM-DGSLLAIASS  294 (323)
T ss_pred             EEEEecc-CCCeEEEEec
Confidence            9999996 9999998763

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=1.3e-24  Score=161.99  Aligned_cols=199  Identities=12%  Similarity=0.112  Sum_probs=146.6

Q ss_pred             CcEEEEcccc----eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            1 MWQIIDIRQH----CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         1 ti~iwd~~~~----~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      +|++||+...    +..+.|...-...|.+++|++.|. .|++.+..-..+|+|-. |..+..+..+............|
T Consensus       190 ~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGH  267 (641)
T KOG0772|consen  190 TVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGH  267 (641)
T ss_pred             eEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCcceeEEccC-CceeeeeeccchhhhhhhccCCc
Confidence            5899999733    333444434556899999999998 67777777899999975 44333333343333333444557


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeee
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH  156 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (250)
                      ...+++..|+|     .+...+++++.||++|+||+...+.......+                                
T Consensus       268 ia~lt~g~whP-----~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~--------------------------------  310 (641)
T KOG0772|consen  268 IAELTCGCWHP-----DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT--------------------------------  310 (641)
T ss_pred             eeeeecccccc-----CcccceEEecCCCcEEEEecCCchhheeEEee--------------------------------
Confidence            88899999999     56788999999999999999874422111110                                


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC--ceeEEEecCCCCCe
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK--KVNWLCTTPTESEN  234 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~  234 (250)
                        ....+..-.++.++|+   ++|++||+|+.||.|.+||..+....      .....-.+|..  .|+++.|++ ||++
T Consensus       311 --k~~~g~Rv~~tsC~~n---rdg~~iAagc~DGSIQ~W~~~~~~v~------p~~~vk~AH~~g~~Itsi~FS~-dg~~  378 (641)
T KOG0772|consen  311 --KPAGGKRVPVTSCAWN---RDGKLIAAGCLDGSIQIWDKGSRTVR------PVMKVKDAHLPGQDITSISFSY-DGNY  378 (641)
T ss_pred             --ccCCCcccCceeeecC---CCcchhhhcccCCceeeeecCCcccc------cceEeeeccCCCCceeEEEecc-ccch
Confidence              1123445678899999   89999999999999999998664322      23344567776  899999997 9999


Q ss_pred             EEEeeCCceEEEEeCC
Q 025649          235 LVVCDTSKVVKVYSIS  250 (250)
Q Consensus       235 l~s~~~d~~i~vw~~~  250 (250)
                      |++-+.|+++++||++
T Consensus       379 LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  379 LLSRGFDDTLKVWDLR  394 (641)
T ss_pred             hhhccCCCceeeeecc
Confidence            9999999999999985

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=3.3e-24  Score=154.14  Aligned_cols=188  Identities=14%  Similarity=0.167  Sum_probs=141.4

Q ss_pred             cEEEEcccceee---eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLY---KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~---~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |++|...+|.-.   ..|. +|+..|..|+|||..+.+|+|||.||+|+|||++.+.....+...           .|..
T Consensus       236 I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k-----------Ah~s  303 (440)
T KOG0302|consen  236 IHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK-----------AHNS  303 (440)
T ss_pred             eEeeeeccCceeecCcccc-ccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee-----------ccCC
Confidence            678888776543   3466 899999999999998879999999999999999988433333211           2678


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD  158 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (250)
                      .|+.+.|+.      +-.+|++|+.||+++|||++..+.                                     .+++
T Consensus       304 DVNVISWnr------~~~lLasG~DdGt~~iwDLR~~~~-------------------------------------~~pV  340 (440)
T KOG0302|consen  304 DVNVISWNR------REPLLASGGDDGTLSIWDLRQFKS-------------------------------------GQPV  340 (440)
T ss_pred             ceeeEEccC------CcceeeecCCCceEEEEEhhhccC-------------------------------------CCcc
Confidence            899999997      666999999999999999996331                                     1356


Q ss_pred             ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec----c-cc--cceeeeeecc--CCceeEEEecC
Q 025649          159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT----S-IN--NDLLIKNINL--NKKVNWLCTTP  229 (250)
Q Consensus       159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~-~~--~~~~~~~~~~--~~~v~~~~~~~  229 (250)
                      ..|+-|+.+|+++.|+|  .+...|++++.|..|.+||+........    . ..  .-+.+.+.-|  ...+..+.|++
T Consensus       341 A~fk~Hk~pItsieW~p--~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~  418 (440)
T KOG0302|consen  341 ATFKYHKAPITSIEWHP--HEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHR  418 (440)
T ss_pred             eeEEeccCCeeEEEecc--ccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheecc
Confidence            68889999999999996  4567888889999999999976433110    0 00  0011122334  34688899999


Q ss_pred             CCCCeEEEeeCCceEEEE
Q 025649          230 TESENLVVCDTSKVVKVY  247 (250)
Q Consensus       230 ~~~~~l~s~~~d~~i~vw  247 (250)
                      .-+.++++.+.|| +.||
T Consensus       419 QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  419 QIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             CCCCeEEEecccc-eeEE
Confidence            7788999999998 4444

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=2.8e-25  Score=171.41  Aligned_cols=203  Identities=15%  Similarity=0.196  Sum_probs=169.4

Q ss_pred             EEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEE
Q 025649            4 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI   83 (250)
Q Consensus         4 iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   83 (250)
                      ||.+..--.+..|. +|..+|.++.|++... +|++|+.+|+|++||++.++.++++. +            |...+.++
T Consensus        54 L~~i~kp~~i~S~~-~hespIeSl~f~~~E~-LlaagsasgtiK~wDleeAk~vrtLt-g------------h~~~~~sv  118 (825)
T KOG0267|consen   54 LWAIGKPNAITSLT-GHESPIESLTFDTSER-LLAAGSASGTIKVWDLEEAKIVRTLT-G------------HLLNITSV  118 (825)
T ss_pred             cccccCCchhheee-ccCCcceeeecCcchh-hhcccccCCceeeeehhhhhhhhhhh-c------------cccCccee
Confidence            55554444555678 9999999999999988 89999999999999999998888776 3            57889999


Q ss_pred             ecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe---eeeeeccCeeeeeecc
Q 025649           84 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSGGKRLHLDYS  160 (250)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  160 (250)
                      .|+|      -+.+.+.|+.|+.+.+||.+..-+...... +...+..+.|+|+|++++.-   .....++....+.+..
T Consensus       119 ~f~P------~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e  191 (825)
T KOG0267|consen  119 DFHP------YGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE  191 (825)
T ss_pred             eecc------ceEEeccccccccceehhhhccCceeeecC-CcceeEEEeecCCCceeeccCCcceeeeecccccccccc
Confidence            9999      889999999999999999997666666665 55788999999999999842   2334455666677889


Q ss_pred             ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC
Q 025649          161 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT  240 (250)
Q Consensus       161 ~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  240 (250)
                      |.+|.+.+..+.|+   |..-++++|+.|+++++||+++.         +.+.........|.++.|.| ++..+++|..
T Consensus       192 f~~~e~~v~sle~h---p~e~Lla~Gs~d~tv~f~dletf---------e~I~s~~~~~~~v~~~~fn~-~~~~~~~G~q  258 (825)
T KOG0267|consen  192 FKSHEGKVQSLEFH---PLEVLLAPGSSDRTVRFWDLETF---------EVISSGKPETDGVRSLAFNP-DGKIVLSGEQ  258 (825)
T ss_pred             cccccccccccccC---chhhhhccCCCCceeeeecccee---------EEeeccCCccCCceeeeecC-CceeeecCch
Confidence            99999999999999   78788999999999999999986         56656666677899999998 8888887765


Q ss_pred             C
Q 025649          241 S  241 (250)
Q Consensus       241 d  241 (250)
                      +
T Consensus       259 ~  259 (825)
T KOG0267|consen  259 I  259 (825)
T ss_pred             h
Confidence            4

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=1.3e-24  Score=161.79  Aligned_cols=211  Identities=15%  Similarity=0.174  Sum_probs=171.4

Q ss_pred             CcEEEEccc--ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQ--HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~--~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |+.|||+.+  .+....+. .-.-...+++.+||.+ +.++|..||.|.|||+.+-..++.|+ +            |++
T Consensus       488 tlsiWDLAapTprikaelt-ssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~Vrqfq-G------------htD  552 (705)
T KOG0639|consen  488 TLSIWDLAAPTPRIKAELT-SSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQ-G------------HTD  552 (705)
T ss_pred             eeeeeeccCCCcchhhhcC-CcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeeccc-C------------CCC
Confidence            688999974  44445555 4456788999999999 89999999999999999988888888 4            689


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC---eee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG---KRL  155 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  155 (250)
                      .+.|+.+++      +|..|-+|+-|++||.||+++++.+..-...  ..|.++.++|++..++ +|..+....   ...
T Consensus       553 GascIdis~------dGtklWTGGlDntvRcWDlregrqlqqhdF~--SQIfSLg~cP~~dWla-vGMens~vevlh~sk  623 (705)
T KOG0639|consen  553 GASCIDISK------DGTKLWTGGLDNTVRCWDLREGRQLQQHDFS--SQIFSLGYCPTGDWLA-VGMENSNVEVLHTSK  623 (705)
T ss_pred             CceeEEecC------CCceeecCCCccceeehhhhhhhhhhhhhhh--hhheecccCCCcccee-eecccCcEEEEecCC
Confidence            999999998      9999999999999999999998776554443  6899999999999999 665544321   122


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                      ...+.+.-|..-|.++.|.   +.|+++++.+.|..+..|...-+...          ....-.+.|.++.++. |.++|
T Consensus       624 p~kyqlhlheScVLSlKFa---~cGkwfvStGkDnlLnawrtPyGasi----------FqskE~SsVlsCDIS~-ddkyI  689 (705)
T KOG0639|consen  624 PEKYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYGASI----------FQSKESSSVLSCDISF-DDKYI  689 (705)
T ss_pred             ccceeecccccEEEEEEec---ccCceeeecCchhhhhhccCccccce----------eeccccCcceeeeecc-CceEE
Confidence            2234566788999999999   89999999999999999998887422          1223456788888886 78899


Q ss_pred             EEeeCCceEEEEeC
Q 025649          236 VVCDTSKVVKVYSI  249 (250)
Q Consensus       236 ~s~~~d~~i~vw~~  249 (250)
                      +||+.|....||.+
T Consensus       690 VTGSGdkkATVYeV  703 (705)
T KOG0639|consen  690 VTGSGDKKATVYEV  703 (705)
T ss_pred             EecCCCcceEEEEE
Confidence            99999999999875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=2.6e-24  Score=153.92  Aligned_cols=211  Identities=17%  Similarity=0.164  Sum_probs=161.3

Q ss_pred             eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649           12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML   91 (250)
Q Consensus        12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   91 (250)
                      .+..|. ||.+.|.+++=+|..-..+++|+.||.|++||+.+..++.+++.+             .+.|.++.+.     
T Consensus        58 Fv~~L~-gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH-------------~G~V~Gi~v~-----  118 (433)
T KOG0268|consen   58 FVGSLD-GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAH-------------EGLVRGICVT-----  118 (433)
T ss_pred             chhhcc-ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecc-------------cCceeeEEec-----
Confidence            355677 999999999999988448999999999999999999999999844             6789999987     


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-eeeeccCeeeeeeccccCccccEEE
Q 025649           92 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-ILDQSGGKRLHLDYSVGGHTAAASC  170 (250)
Q Consensus        92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~  170 (250)
                         ...+++++.|++|+.|-++.. ....+..  +..+..+.-+..+..+++.| ..++|+.....++..+.-....|.+
T Consensus       119 ---~~~~~tvgdDKtvK~wk~~~~-p~~tilg--~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~s  192 (433)
T KOG0268|consen  119 ---QTSFFTVGDDKTVKQWKIDGP-PLHTILG--KSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISS  192 (433)
T ss_pred             ---ccceEEecCCcceeeeeccCC-cceeeec--cccccccccccccccccccCceeeecccccCCccceeecCCCceeE
Confidence               267888999999999998753 2222222  14555666666666777544 2555666666677788777788999


Q ss_pred             EEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecc---------------------------------cccceeeeeec
Q 025649          171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS---------------------------------INNDLLIKNIN  217 (250)
Q Consensus       171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------------------------~~~~~~~~~~~  217 (250)
                      +.|+|  -.-..|+++.+|+.|.+||++....++..                                 --..++....+
T Consensus       193 vkfNp--vETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d  270 (433)
T KOG0268|consen  193 VKFNP--VETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD  270 (433)
T ss_pred             EecCC--CcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcc
Confidence            99995  33457778889999999999987655310                                 00233456678


Q ss_pred             cCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          218 LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      |.+.|.++.|+| .|+-|++||.|.+|+||.++
T Consensus       271 hvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  271 HVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             cceeEEEeccCC-CcchhccccccceEEEeecC
Confidence            999999999998 78899999999999999864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=6.6e-24  Score=149.94  Aligned_cols=205  Identities=13%  Similarity=0.168  Sum_probs=163.3

Q ss_pred             eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649           11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM   90 (250)
Q Consensus        11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   90 (250)
                      ++++.|. ||.+.|..++.....+ .+.+++.|.+.+||.+++++++..+. +            |.+.|+++.|++   
T Consensus       139 ~lvre~~-GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~Y~-G------------H~GSVNsikfh~---  200 (481)
T KOG0300|consen  139 RLVRELE-GHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLATYT-G------------HTGSVNSIKFHN---  200 (481)
T ss_pred             eehhhhc-ccccceeeehhhcCCc-ceeecccccceeEEeeccccceeeec-c------------cccceeeEEecc---
Confidence            4556677 9999999999888777 89999999999999999999999887 4            688999999998   


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeC------CCce---------eEee------------------------ccCCCCCCccc
Q 025649           91 LDKTNKICVVAKGDGVVDVINI------ESEL---------NISR------------------------SKSTTKPLKGS  131 (250)
Q Consensus        91 ~~~~~~~l~~~~~d~~i~~~d~------~~~~---------~~~~------------------------~~~~~~~~~~~  131 (250)
                         .+.++++++.|++-+||..      ....         ....                        ....+...+.+
T Consensus       201 ---s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a  277 (481)
T KOG0300|consen  201 ---SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA  277 (481)
T ss_pred             ---ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence               8999999999999999972      2100         0000                        00011233344


Q ss_pred             eeecccceeEEEeeeeee----ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccc
Q 025649          132 QSTSKVNIRDAEMEILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI  207 (250)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  207 (250)
                      ..|-..|+.++ .++||.    ++.+..+++..+.||....+.+.-+   |..+++++.+.|.+.++||++..-      
T Consensus       278 ~dWL~gg~Q~v-TaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstH---ptQrLVvTsSrDtTFRLWDFReaI------  347 (481)
T KOG0300|consen  278 CDWLAGGQQMV-TASWDRTANLWDVETGEVVNILTGHDSELTHCSTH---PTQRLVVTSSRDTTFRLWDFREAI------  347 (481)
T ss_pred             hhhhcCcceee-eeeccccceeeeeccCceeccccCcchhccccccC---CcceEEEEeccCceeEeccchhhc------
Confidence            44555666666 555554    4667888899999999999999888   888999999999999999999642      


Q ss_pred             ccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          208 NNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       208 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                        ..+..+.+|...|+++.|.-  +..+++|+.|.+|++||++
T Consensus       348 --~sV~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLr  386 (481)
T KOG0300|consen  348 --QSVAVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLR  386 (481)
T ss_pred             --ceeeeecccccceeEEEEec--CCceeecCCCceEEEeeec
Confidence              55678899999999999974  3469999999999999985

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.1e-23  Score=151.78  Aligned_cols=204  Identities=14%  Similarity=0.113  Sum_probs=156.3

Q ss_pred             eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC---ccceecCCCCCCCCCCcccCCCceeEEecCCC
Q 025649           12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP---NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA   88 (250)
Q Consensus        12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   88 (250)
                      ..+.+. .|++.|..+.||++|+ +|||++.|.+..+|++.....   .+++. +            |..+|.-+.|+| 
T Consensus       216 t~qil~-~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~kl~~tlv-g------------h~~~V~yi~wSP-  279 (519)
T KOG0293|consen  216 TWQILQ-DHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFKLKKTLV-G------------HSQPVSYIMWSP-  279 (519)
T ss_pred             hhhhHh-hCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcceeeeeeee-c------------ccCceEEEEECC-
Confidence            345677 8999999999999999 999999999999999865443   33333 2            678999999999 


Q ss_pred             cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc--------------Ce-
Q 025649           89 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG--------------GK-  153 (250)
Q Consensus        89 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-  153 (250)
                           |.++|++++.|..+.+||+.+|.............+.+.+|.|||..+++ |+-|...              .. 
T Consensus       280 -----DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~-Gs~dr~i~~wdlDgn~~~~W~gvr  353 (519)
T KOG0293|consen  280 -----DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT-GSPDRTIIMWDLDGNILGNWEGVR  353 (519)
T ss_pred             -----CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe-cCCCCcEEEecCCcchhhcccccc
Confidence                 99999999999999999999999887777766788999999999999883 3222110              00 


Q ss_pred             -----------eeeee-------------------ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649          154 -----------RLHLD-------------------YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV  203 (250)
Q Consensus       154 -----------~~~~~-------------------~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~  203 (250)
                                 ..+.+                   ..+-....+|++...|   .+++++++.-.+..+.+||++..   
T Consensus       354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS---~d~k~~LvnL~~qei~LWDl~e~---  427 (519)
T KOG0293|consen  354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSIS---KDGKLALVNLQDQEIHLWDLEEN---  427 (519)
T ss_pred             cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEc---CCCcEEEEEcccCeeEEeecchh---
Confidence                       00000                   0011234578888888   88888888888889999999864   


Q ss_pred             ecccccceeeeeeccCCc--eeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          204 QTSINNDLLIKNINLNKK--VNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                            .++..+.+|...  +..-+|--.+..++++||.|++|+||+.
T Consensus       428 ------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr  469 (519)
T KOG0293|consen  428 ------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR  469 (519)
T ss_pred             ------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEc
Confidence                  666778888875  3344566556679999999999999985

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=5e-25  Score=170.04  Aligned_cols=201  Identities=17%  Similarity=0.235  Sum_probs=170.0

Q ss_pred             eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649           15 SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT   94 (250)
Q Consensus        15 ~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (250)
                      .+- .|...|.++..-..++ .+++|+.|..+-+|.+...-.+-.+. +            |...|.++.|++      .
T Consensus        23 ~~~-~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S~~-~------------hespIeSl~f~~------~   81 (825)
T KOG0267|consen   23 EFV-AHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITSLT-G------------HESPIESLTFDT------S   81 (825)
T ss_pred             hhh-hhhhhhceeeeeccce-eeccCCCceeeccccccCCchhheee-c------------cCCcceeeecCc------c
Confidence            344 7889999999866667 89999999999999986655554444 2            688999999998      8


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeeccCeeeeeeccccCccccEEEE
Q 025649           95 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSVGGHTAAASCV  171 (250)
Q Consensus        95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~~  171 (250)
                      ..+|++|+.+|+|++||++..+....+..+ ...+.++.|+|-+.+.+.   .+.+..++.+..-+.+.+.+|...+.++
T Consensus        82 E~LlaagsasgtiK~wDleeAk~vrtLtgh-~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l  160 (825)
T KOG0267|consen   82 ERLLAAGSASGTIKVWDLEEAKIVRTLTGH-LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL  160 (825)
T ss_pred             hhhhcccccCCceeeeehhhhhhhhhhhcc-ccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEE
Confidence            899999999999999999988766655554 367888999999999962   3335556666677888999999999999


Q ss_pred             EeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          172 AFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       172 ~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +|+   |+|+++++|++|..++|||+..+         +++..+..|++.+..+.++| ..-++++|+.|+++++||++
T Consensus       161 ~ls---P~Gr~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  161 RLS---PDGRWVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             eec---CCCceeeccCCcceeeeeccccc---------ccccccccccccccccccCc-hhhhhccCCCCceeeeeccc
Confidence            999   89999999999999999999998         78888899999999999998 55578889999999999985

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=5.4e-24  Score=154.56  Aligned_cols=208  Identities=15%  Similarity=0.144  Sum_probs=158.8

Q ss_pred             cEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            2 WQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         2 i~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      |++|++...+  .+.+|. |-.++|+.+.|.+++. ++++++.|+.+++|++...+...++. +            |.+.
T Consensus       199 Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~-~~iAas~d~~~r~Wnvd~~r~~~TLs-G------------Htdk  263 (459)
T KOG0288|consen  199 IKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNK-HVIAASNDKNLRLWNVDSLRLRHTLS-G------------HTDK  263 (459)
T ss_pred             hhhhhcccchhhhhhhhh-ccCCCcceeeecCCCc-eEEeecCCCceeeeeccchhhhhhhc-c------------cccc
Confidence            6789887555  778888 8899999999999999 89999999999999999999988887 4            6899


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----cCeee
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRL  155 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  155 (250)
                      |+++.|..      ....+++|+.|.+|++||+....+.......  ..+..+..+  ...++ ++..|..    +....
T Consensus       264 Vt~ak~~~------~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~--~~~~~-SgH~DkkvRfwD~Rs~  332 (459)
T KOG0288|consen  264 VTAAKFKL------SHSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS--ISDVI-SGHFDKKVRFWDIRSA  332 (459)
T ss_pred             eeeehhhc------cccceeeccccchhhhhhhhhhheecccccc--ccccceEec--ceeee-ecccccceEEEeccCC
Confidence            99999986      5555999999999999999987766654433  333333333  11111 3332222    22333


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeec----cCCceeEEEecCCC
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN----LNKKVNWLCTTPTE  231 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~  231 (250)
                      .+....+.+. .|+++..+   ++|..+++++.|.++.+.|+++..         ....+..    .....+.+.|+| +
T Consensus       333 ~~~~sv~~gg-~vtSl~ls---~~g~~lLsssRDdtl~viDlRt~e---------I~~~~sA~g~k~asDwtrvvfSp-d  398 (459)
T KOG0288|consen  333 DKTRSVPLGG-RVTSLDLS---MDGLELLSSSRDDTLKVIDLRTKE---------IRQTFSAEGFKCASDWTRVVFSP-D  398 (459)
T ss_pred             ceeeEeecCc-ceeeEeec---cCCeEEeeecCCCceeeeeccccc---------EEEEeeccccccccccceeEECC-C
Confidence            4455666554 89999999   899999999999999999999973         3222221    122377888998 8


Q ss_pred             CCeEEEeeCCceEEEEeC
Q 025649          232 SENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       232 ~~~l~s~~~d~~i~vw~~  249 (250)
                      +.|+++||.||.|+||++
T Consensus       399 ~~YvaAGS~dgsv~iW~v  416 (459)
T KOG0288|consen  399 GSYVAAGSADGSVYIWSV  416 (459)
T ss_pred             CceeeeccCCCcEEEEEc
Confidence            999999999999999986

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.92  E-value=2.2e-23  Score=147.45  Aligned_cols=219  Identities=13%  Similarity=0.104  Sum_probs=158.6

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |+|.|+.++++...+. +|...|+.|.++|+.++++++||.|.+||+|++++..++..+-          +...|.+.|.
T Consensus       117 IrVid~~~~~~~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG----------G~egHrdeVL  185 (385)
T KOG1034|consen  117 IRVIDVVSGQCSKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG----------GVEGHRDEVL  185 (385)
T ss_pred             EEEEecchhhhcccee-ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec----------ccccccCcEE
Confidence            7999999999999999 9999999999999998899999999999999999999988875          3455899999


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC---------------------------CCCCccceee
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST---------------------------TKPLKGSQST  134 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---------------------------~~~~~~~~~~  134 (250)
                      ++.|++      ++.+|++++.|.+|++|++...+....++..                           +...+.|+.|
T Consensus       186 SvD~~~------~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw  259 (385)
T KOG1034|consen  186 SVDFSL------DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW  259 (385)
T ss_pred             EEEEcC------CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence            999998      9999999999999999999853321111100                           0111222221


Q ss_pred             cccceeEEE------eeeeee-ccCe----------eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEec
Q 025649          135 SKVNIRDAE------MEILDQ-SGGK----------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  197 (250)
Q Consensus       135 ~~~~~~~~~------~~~~~~-~~~~----------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~  197 (250)
                      -  |.++++      +..|.. ...+          ....+.++.-....|+-+.|+ +++.++.||.|...|.|.+||+
T Consensus       260 ~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~-~d~~~~~la~gnq~g~v~vwdL  336 (385)
T KOG1034|consen  260 F--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFA-FDPWQKMLALGNQSGKVYVWDL  336 (385)
T ss_pred             H--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEe-ecHHHHHHhhccCCCcEEEEEC
Confidence            1  222221      112222 1111          112234455555667777776 4477899999999999999999


Q ss_pred             CCCcceecccccceeeeeecc---CCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          198 SRFQGVQTSINNDLLIKNINL---NKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +.....        ......|   ...|...+|+. |+.+|+..+.|+.|.-||.
T Consensus       337 ~~~ep~--------~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  337 DNNEPP--------KCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             CCCCCc--------cCceEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEe
Confidence            986432        1222222   34588888885 9999999999999999984

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=3.6e-23  Score=144.82  Aligned_cols=111  Identities=11%  Similarity=0.054  Sum_probs=79.5

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI   97 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (250)
                      ...+.|.+|+|||....+++.+|-||+||+|+++. |..+......            +..++.+++|+.      +|..
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~------------~~~PvL~v~Wsd------dgsk   86 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQS------------HDGPVLDVCWSD------DGSK   86 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhc------------cCCCeEEEEEcc------CCce
Confidence            56788999999996654778999999999999986 4544433323            678999999998      9999


Q ss_pred             EEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccce--eEEEeeeeeec
Q 025649           98 CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI--RDAEMEILDQS  150 (250)
Q Consensus        98 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  150 (250)
                      +++|+.|+.+++||+.+++.......  ...+..+.|-+...  .|+ .|+||.+
T Consensus        87 Vf~g~~Dk~~k~wDL~S~Q~~~v~~H--d~pvkt~~wv~~~~~~cl~-TGSWDKT  138 (347)
T KOG0647|consen   87 VFSGGCDKQAKLWDLASGQVSQVAAH--DAPVKTCHWVPGMNYQCLV-TGSWDKT  138 (347)
T ss_pred             EEeeccCCceEEEEccCCCeeeeeec--ccceeEEEEecCCCcceeE-ecccccc
Confidence            99999999999999999864332211  24455555444333  222 4555443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=1.1e-23  Score=143.88  Aligned_cols=171  Identities=19%  Similarity=0.199  Sum_probs=138.7

Q ss_pred             cEEEEcccce-eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            2 WQIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         2 i~iwd~~~~~-~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +||+|++..+ ....+. +|.+.|..+-|....+ .|++.++|++||+||.+++..++++.+.              ..|
T Consensus       124 lrvfdln~p~App~E~~-ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~v~sL~~~--------------s~V  187 (334)
T KOG0278|consen  124 LRVFDLNRPKAPPKEIS-GHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTEVQSLEFN--------------SPV  187 (334)
T ss_pred             hhhhhccCCCCCchhhc-CCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcEEEEEecC--------------CCC
Confidence            5778876543 456788 9999999999998888 7888899999999999999999999844              679


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC----eeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG----KRLH  156 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  156 (250)
                      +++.+++      +|++|.++ ..+.|.+||..+...+...+.+  ..+.+.+.+|+-..++ .|..|.+..    ...+
T Consensus       188 tSlEvs~------dG~ilTia-~gssV~Fwdaksf~~lKs~k~P--~nV~SASL~P~k~~fV-aGged~~~~kfDy~Tge  257 (334)
T KOG0278|consen  188 TSLEVSQ------DGRILTIA-YGSSVKFWDAKSFGLLKSYKMP--CNVESASLHPKKEFFV-AGGEDFKVYKFDYNTGE  257 (334)
T ss_pred             cceeecc------CCCEEEEe-cCceeEEeccccccceeeccCc--cccccccccCCCceEE-ecCcceEEEEEeccCCc
Confidence            9999998      88887766 4578999999998888777766  6788999999886666 555444421    1222


Q ss_pred             eecc-ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649          157 LDYS-VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  201 (250)
Q Consensus       157 ~~~~-~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~  201 (250)
                      .+.. -++|.++|.|+.|+   |+|...++||+||+|++|.+..++
T Consensus       258 Ei~~~nkgh~gpVhcVrFS---PdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  258 EIGSYNKGHFGPVHCVRFS---PDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             eeeecccCCCCceEEEEEC---CCCceeeccCCCceEEEEEecCCC
Confidence            2223 38999999999999   899999999999999999988764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.91  E-value=2.8e-23  Score=154.99  Aligned_cols=200  Identities=16%  Similarity=0.123  Sum_probs=144.9

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC-ccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI   97 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (250)
                      ||...++|.+|+|+.+..++|++.||++|+||+.+.+. +..++.. +       .....-.++..+|+|      +++.
T Consensus       266 GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k-~-------~~g~Rv~~tsC~~nr------dg~~  331 (641)
T KOG0772|consen  266 GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK-P-------AGGKRVPVTSCAWNR------DGKL  331 (641)
T ss_pred             CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec-c-------CCCcccCceeeecCC------Ccch
Confidence            89999999999999977899999999999999986543 3333311 0       011345678899998      9999


Q ss_pred             EEEEeCCCeEEEEeCCCce--eEeeccCCCC--CCccceeecccceeEEE------eeeeeeccCeeeeeeccccCc--c
Q 025649           98 CVVAKGDGVVDVINIESEL--NISRSKSTTK--PLKGSQSTSKVNIRDAE------MEILDQSGGKRLHLDYSVGGH--T  165 (250)
Q Consensus        98 l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~h--~  165 (250)
                      ||+|+.||.|.+|+..+..  ........+.  ..+.+++||++|++|++      ...||....  .+++....+-  .
T Consensus       332 iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~--kkpL~~~tgL~t~  409 (641)
T KOG0772|consen  332 IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF--KKPLNVRTGLPTP  409 (641)
T ss_pred             hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc--ccchhhhcCCCcc
Confidence            9999999999999986532  2233333333  48999999999999995      233444332  2333333332  2


Q ss_pred             ccEEEEEeecCCCCCcEEEEee------CCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649          166 AAASCVAFSMFGERGKYLISGG------NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD  239 (250)
Q Consensus       166 ~~v~~~~~~p~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  239 (250)
                      .+-+.+.||   |+.+++++|.      ..|++.+||..+.         +.+..+.-....|..+.|+|.-++ |+.|+
T Consensus       410 ~~~tdc~FS---Pd~kli~TGtS~~~~~~~g~L~f~d~~t~---------d~v~ki~i~~aSvv~~~WhpkLNQ-i~~gs  476 (641)
T KOG0772|consen  410 FPGTDCCFS---PDDKLILTGTSAPNGMTAGTLFFFDRMTL---------DTVYKIDISTASVVRCLWHPKLNQ-IFAGS  476 (641)
T ss_pred             CCCCccccC---CCceEEEecccccCCCCCceEEEEeccce---------eeEEEecCCCceEEEEeecchhhh-eeeec
Confidence            234677899   8999999985      3568999999998         444444444677888999996555 66677


Q ss_pred             CCceEEEE
Q 025649          240 TSKVVKVY  247 (250)
Q Consensus       240 ~d~~i~vw  247 (250)
                      .||.+++|
T Consensus       477 gdG~~~vy  484 (641)
T KOG0772|consen  477 GDGTAHVY  484 (641)
T ss_pred             CCCceEEE
Confidence            78999987

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=3.4e-24  Score=172.87  Aligned_cols=219  Identities=13%  Similarity=0.150  Sum_probs=172.2

Q ss_pred             CcEEEEccc---c---eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcc
Q 025649            1 MWQIIDIRQ---H---CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQC   74 (250)
Q Consensus         1 ti~iwd~~~---~---~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~   74 (250)
                      +|.+||...   +   ..+.+.+ .|++.|..+.|++...++|++|+.||.|.|||+.+.+......           ..
T Consensus        91 ~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-----------~~  158 (1049)
T KOG0307|consen   91 NIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-----------SQ  158 (1049)
T ss_pred             ceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----------CC
Confidence            377888764   2   3456677 8999999999999988799999999999999998755433331           11


Q ss_pred             cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC-CCccceeecccceeEEEe---------
Q 025649           75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK-PLKGSQSTSKVNIRDAEM---------  144 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------  144 (250)
                      ..++.|.+++|+.     ...++|++++.+|.+.|||++..+.+..+..... ..+..++|+|++..-+.+         
T Consensus       159 ~~~~eI~~lsWNr-----kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pv  233 (1049)
T KOG0307|consen  159 APPSEIKCLSWNR-----KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPV  233 (1049)
T ss_pred             CCcccceEeccch-----hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCce
Confidence            1467899999997     4577899999999999999998876665544432 457789999986433322         


Q ss_pred             -eeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee
Q 025649          145 -EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN  223 (250)
Q Consensus       145 -~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (250)
                       ..||.+.  ...+++.+.+|...|.++.|++  .|.+++++++.|++|.+|+.+++         +.+..+....+.+.
T Consensus       234 iqlWDlR~--assP~k~~~~H~~GilslsWc~--~D~~lllSsgkD~~ii~wN~~tg---------Evl~~~p~~~nW~f  300 (1049)
T KOG0307|consen  234 IQLWDLRF--ASSPLKILEGHQRGILSLSWCP--QDPRLLLSSGKDNRIICWNPNTG---------EVLGELPAQGNWCF  300 (1049)
T ss_pred             eEeecccc--cCCchhhhcccccceeeeccCC--CCchhhhcccCCCCeeEecCCCc---------eEeeecCCCCccee
Confidence             2233322  2335677899999999999995  45589999999999999999998         77777777778899


Q ss_pred             EEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          224 WLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       224 ~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .+.|+|.+...|+.++.||.|.||.+
T Consensus       301 dv~w~pr~P~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  301 DVQWCPRNPSVMAAASFDGKISIYSL  326 (1049)
T ss_pred             eeeecCCCcchhhhheeccceeeeee
Confidence            99999999989999999999999986

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.6e-22  Score=140.85  Aligned_cols=213  Identities=13%  Similarity=0.138  Sum_probs=154.1

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      ++++||..+.++...++  |..++.+++|.++.  .+++|+.||.|+.+|+.++.....-.              |...+
T Consensus        36 slrlYdv~~~~l~~~~~--~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~~~~~~igt--------------h~~~i   97 (323)
T KOG1036|consen   36 SLRLYDVPANSLKLKFK--HGAPLLDCAFADES--TIVTGGLDGQVRRYDLNTGNEDQIGT--------------HDEGI   97 (323)
T ss_pred             cEEEEeccchhhhhhee--cCCceeeeeccCCc--eEEEeccCceEEEEEecCCcceeecc--------------CCCce
Confidence            47899999888888887  99999999999966  59999999999999999887554443              67899


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE----eeeeeeccCeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE----MEILDQSGGKRLH  156 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  156 (250)
                      .++..++      ....+++|+.|++|++||.+...........  ..|.++....+--.+++    +-.+|.+......
T Consensus        98 ~ci~~~~------~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~--kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~  169 (323)
T KOG1036|consen   98 RCIEYSY------EVGCVISGSWDKTIKFWDPRNKVVVGTFDQG--KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF  169 (323)
T ss_pred             EEEEeec------cCCeEEEcccCccEEEEeccccccccccccC--ceEEEEeccCCEEEEeecCceEEEEEcccccchh
Confidence            9999998      7888999999999999999974444333333  35666665544433322    2234443332221


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC---------CceeEEEe
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN---------KKVNWLCT  227 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~  227 (250)
                      . ..-..-+-.+.|+++.   |++.-++.+|-||+|.+=.+......+     .....+..|.         -+|++|+|
T Consensus       170 q-~reS~lkyqtR~v~~~---pn~eGy~~sSieGRVavE~~d~s~~~~-----skkyaFkCHr~~~~~~~~~yPVNai~F  240 (323)
T KOG1036|consen  170 Q-RRESSLKYQTRCVALV---PNGEGYVVSSIEGRVAVEYFDDSEEAQ-----SKKYAFKCHRLSEKDTEIIYPVNAIAF  240 (323)
T ss_pred             h-hccccceeEEEEEEEe---cCCCceEEEeecceEEEEccCCchHHh-----hhceeEEeeecccCCceEEEEeceeEe
Confidence            1 1112345678999999   788889999999999886666543222     1112333332         26999999


Q ss_pred             cCCCCCeEEEeeCCceEEEEeC
Q 025649          228 TPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       228 ~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +|. .+.|+||+.||.|.+||+
T Consensus       241 hp~-~~tfaTgGsDG~V~~Wd~  261 (323)
T KOG1036|consen  241 HPI-HGTFATGGSDGIVNIWDL  261 (323)
T ss_pred             ccc-cceEEecCCCceEEEccC
Confidence            995 567999999999999996

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=4.8e-23  Score=151.49  Aligned_cols=220  Identities=14%  Similarity=0.139  Sum_probs=157.3

Q ss_pred             EcccceeeeeeccCCCCCeeeEEEcCCCC-eEEEEecCCCeEEEEEccCCCC-ccceecCCCCCCCCCCcccCCCceeEE
Q 025649            6 DIRQHCLYKSLRAGHSSICSSVQFIPWKP-WEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHAI   83 (250)
Q Consensus         6 d~~~~~~~~~l~~~h~~~v~~l~~~~~~~-~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~   83 (250)
                      |+.+-.....++ -+...|++++|+|... .++++|+.-|+|-+||+.+.+. ...+          .....|..+|.++
T Consensus       172 ~l~~~~~~~v~k-v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----------~~f~~hs~~Vs~l  240 (498)
T KOG4328|consen  172 DLDDYRILNVAK-VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----------YLFTPHSGPVSGL  240 (498)
T ss_pred             ccccceecceeE-ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----------EEeccCCccccce
Confidence            334445556677 7889999999999775 5899999999999999963221 1111          1112267789999


Q ss_pred             ecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC-CCCCCccceeecccceeEEEeeeee---eccCee-eeee
Q 025649           84 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNIRDAEMEILD---QSGGKR-LHLD  158 (250)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~  158 (250)
                      .|+|     .+...+++.+.||+|++-|++.......... ........+.|+.+...++....+.   ..+.+. ....
T Consensus       241 ~F~P-----~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~  315 (498)
T KOG4328|consen  241 KFSP-----ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY  315 (498)
T ss_pred             EecC-----CChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence            9999     5778999999999999999987543322222 1224566677777665555332222   222221 1123


Q ss_pred             ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649          159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC  238 (250)
Q Consensus       159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  238 (250)
                      ..+.-|+..|.+++++|.  .-.+|+|+|.|++++|||++......     .++.....|...|.+..|+|.+|. |+|.
T Consensus       316 ~~~~lh~kKI~sv~~NP~--~p~~laT~s~D~T~kIWD~R~l~~K~-----sp~lst~~HrrsV~sAyFSPs~gt-l~TT  387 (498)
T KOG4328|consen  316 ENLRLHKKKITSVALNPV--CPWFLATASLDQTAKIWDLRQLRGKA-----SPFLSTLPHRRSVNSAYFSPSGGT-LLTT  387 (498)
T ss_pred             hhhhhhhcccceeecCCC--CchheeecccCcceeeeehhhhcCCC-----CcceecccccceeeeeEEcCCCCc-eEee
Confidence            456668889999999973  44789999999999999999864331     234566789999999999997776 9999


Q ss_pred             eCCceEEEEeC
Q 025649          239 DTSKVVKVYSI  249 (250)
Q Consensus       239 ~~d~~i~vw~~  249 (250)
                      +.|..|+|||.
T Consensus       388 ~~D~~IRv~ds  398 (498)
T KOG4328|consen  388 CQDNEIRVFDS  398 (498)
T ss_pred             ccCCceEEeec
Confidence            99999999985

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=5.8e-23  Score=157.07  Aligned_cols=223  Identities=14%  Similarity=0.080  Sum_probs=175.1

Q ss_pred             CcEEEEcccc--eeeeeeccCCCCCeeeEEE-cCCCCeEEEEecCCCeEEEEEccCC--CCccceecCCCCCCCCCCccc
Q 025649            1 MWQIIDIRQH--CLYKSLRAGHSSICSSVQF-IPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         1 ti~iwd~~~~--~~~~~l~~~h~~~v~~l~~-~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      ||++|+...+  -++.++. .|.+-|.|+++ -++.. ++|||+-|+.|.+||++++  +.+.++..-    ........
T Consensus        96 TVK~W~~~~~~~~c~stir-~H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n~~----t~~sl~sG  169 (735)
T KOG0308|consen   96 TVKVWNAHKDNTFCMSTIR-THKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTATLVASFNNV----TVNSLGSG  169 (735)
T ss_pred             eEEEeecccCcchhHhhhh-cccchheeeeecccCce-eEEecCCCccEEEEEccCcchhhhhhcccc----ccccCCCC
Confidence            6999999876  5778899 99999999999 67777 9999999999999999988  344444311    11122224


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeeccC
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGG  152 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  152 (250)
                      +...|++++.++      .+..+++|+..+.+++||.++.+.+..+..+ ...+..+..++||..+++   .|....|+.
T Consensus       170 ~k~siYSLA~N~------t~t~ivsGgtek~lr~wDprt~~kimkLrGH-TdNVr~ll~~dDGt~~ls~sSDgtIrlWdL  242 (735)
T KOG0308|consen  170 PKDSIYSLAMNQ------TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH-TDNVRVLLVNDDGTRLLSASSDGTIRLWDL  242 (735)
T ss_pred             CccceeeeecCC------cceEEEecCcccceEEeccccccceeeeecc-ccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence            778999999998      8999999999999999999999988888844 589999999999999985   345566667


Q ss_pred             eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649          153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES  232 (250)
Q Consensus       153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (250)
                      ...+++.++..|+..|+++..+   |+-..+.+|+.||.|..=|+++....         ..+.....+|..+..+..+.
T Consensus       243 gqQrCl~T~~vH~e~VWaL~~~---~sf~~vYsG~rd~~i~~Tdl~n~~~~---------tlick~daPv~~l~~~~~~~  310 (735)
T KOG0308|consen  243 GQQRCLATYIVHKEGVWALQSS---PSFTHVYSGGRDGNIYRTDLRNPAKS---------TLICKEDAPVLKLHLHEHDN  310 (735)
T ss_pred             cccceeeeEEeccCceEEEeeC---CCcceEEecCCCCcEEecccCCchhh---------eEeecCCCchhhhhhccccC
Confidence            7778899999999999999999   88899999999999999999996322         12223334566665554333


Q ss_pred             CeEEEeeCCceEEEEeC
Q 025649          233 ENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       233 ~~l~s~~~d~~i~vw~~  249 (250)
                      . +-++..|+.|+-|..
T Consensus       311 ~-~WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  311 S-VWVTTTDSSIKRWKL  326 (735)
T ss_pred             C-ceeeeccccceecCC
Confidence            3 356667777877754

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=5.6e-24  Score=165.36  Aligned_cols=158  Identities=17%  Similarity=0.229  Sum_probs=132.3

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccC---CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSK---GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV   99 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~   99 (250)
                      .+..+.|....+++|+|++..|.|.+||+..   .+.+..|. .            |...++++.|++     ...++|+
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-E------------H~Rs~~~ldfh~-----tep~ili  150 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN-E------------HERSANKLDFHS-----TEPNILI  150 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh-h------------hccceeeeeecc-----CCccEEE
Confidence            4567788865556999999999999999976   34444554 2            678999999998     5789999


Q ss_pred             EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649          100 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER  179 (250)
Q Consensus       100 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  179 (250)
                      +|++||+|++||++..+..                                        .++.+-...|..|.|+|  ..
T Consensus       151 SGSQDg~vK~~DlR~~~S~----------------------------------------~t~~~nSESiRDV~fsp--~~  188 (839)
T KOG0269|consen  151 SGSQDGTVKCWDLRSKKSK----------------------------------------STFRSNSESIRDVKFSP--GY  188 (839)
T ss_pred             ecCCCceEEEEeeeccccc----------------------------------------ccccccchhhhceeecc--CC
Confidence            9999999999999964422                                        24455667899999997  56


Q ss_pred             CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          180 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       180 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +..|+++...|.+.+||++...        .....+.+|.++|.++.|+| ++.+|||||+|+.|+|||+
T Consensus       189 ~~~F~s~~dsG~lqlWDlRqp~--------r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~  249 (839)
T KOG0269|consen  189 GNKFASIHDSGYLQLWDLRQPD--------RCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDM  249 (839)
T ss_pred             CceEEEecCCceEEEeeccCch--------hHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEec
Confidence            8899999999999999999864        45567789999999999999 8899999999999999996

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=6.1e-22  Score=139.10  Aligned_cols=233  Identities=12%  Similarity=0.103  Sum_probs=159.1

Q ss_pred             CcEEEEcc----cceeeeeeccCCCCCeeeEEEcC--CCCeEEEEecCCCeEEEEEccCC--CC-ccceecCCCCCCCCC
Q 025649            1 MWQIIDIR----QHCLYKSLRAGHSSICSSVQFIP--WKPWEVISGGLDSKLVMWDFSKG--RP-NKIVNFGLPENNGNA   71 (250)
Q Consensus         1 ti~iwd~~----~~~~~~~l~~~h~~~v~~l~~~~--~~~~~l~s~s~dg~v~iwd~~~~--~~-~~~~~~~~~~~~~~~   71 (250)
                      +|+|||.+    +..+....+ .|.+.|..+.|.+  -|+ .+++|+.|+++.||.-...  +. -..+.       ...
T Consensus        36 ~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGq-vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv-------~~t  106 (361)
T KOG2445|consen   36 TVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQ-VVATCSYDRTVSIWEEQEKSEEAHGRRWV-------RRT  106 (361)
T ss_pred             cEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccc-eEEEEecCCceeeeeecccccccccceeE-------EEE
Confidence            58999964    345667788 9999999999954  466 9999999999999986311  11 00110       001


Q ss_pred             CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE------eecc------CCCCCCccceeeccc--
Q 025649           72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI------SRSK------STTKPLKGSQSTSKV--  137 (250)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~------~~~~------~~~~~~~~~~~~~~~--  137 (250)
                      .+.-....|+.+.|.|.    .-|-.|++++.||.+|||+......+      .++.      ........|+.|+|.  
T Consensus       107 tl~DsrssV~DV~FaP~----hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~  182 (361)
T KOG2445|consen  107 TLVDSRSSVTDVKFAPK----HLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRM  182 (361)
T ss_pred             EeecCCcceeEEEecch----hcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccc
Confidence            11224678999999993    34788999999999999998763211      1111      223456778888874  


Q ss_pred             -ceeEEEeeeee------------ec-cCeeeeeeccccCccccEEEEEeecC-CCCCcEEEEeeCCCeEEEEecCCCcc
Q 025649          138 -NIRDAEMEILD------------QS-GGKRLHLDYSVGGHTAAASCVAFSMF-GERGKYLISGGNDKLVKVWDCSRFQG  202 (250)
Q Consensus       138 -~~~~~~~~~~~------------~~-~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~~~l~s~~~d~~i~iwd~~~~~~  202 (250)
                       ..+++ +|..+            .. ..+....+.++.+|..+|+.++|.|. ...-.+||+++.|| |+||.++....
T Consensus       183 ~~p~iA-vgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s  260 (361)
T KOG2445|consen  183 HEPLIA-VGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARS  260 (361)
T ss_pred             cCceEE-EEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccc
Confidence             23444 44433            11 12244456678899999999999951 11235899999999 99999985221


Q ss_pred             e-------e----cccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          203 V-------Q----TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       203 ~-------~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .       .    ..-.-+.+..+.+|.+.|+.+.|+- .|..|++.|.||.|++|..
T Consensus       261 ~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  261 AIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             hhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhh
Confidence            0       0    0001134456778999999999996 8999999999999999964

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.3e-22  Score=149.47  Aligned_cols=194  Identities=14%  Similarity=0.175  Sum_probs=136.1

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |.+|.+.......... --.++|.+++-+|+|. +|+.|+..|.|.+|.+.+|..+..+..             |-..|+
T Consensus        63 l~vw~i~k~~~~~q~~-v~Pg~v~al~s~n~G~-~l~ag~i~g~lYlWelssG~LL~v~~a-------------HYQ~IT  127 (476)
T KOG0646|consen   63 LHVWEILKKDQVVQYI-VLPGPVHALASSNLGY-FLLAGTISGNLYLWELSSGILLNVLSA-------------HYQSIT  127 (476)
T ss_pred             ccccccCchhhhhhhc-ccccceeeeecCCCce-EEEeecccCcEEEEEeccccHHHHHHh-------------hcccee
Confidence            4567665443333111 3567899999999998 788888999999999999999988863             467899


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccc
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV  161 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (250)
                      ++.|+.      |+.+|++|+.||.|.+|++..-...                               ......++++.+
T Consensus       128 cL~fs~------dgs~iiTgskDg~V~vW~l~~lv~a-------------------------------~~~~~~~p~~~f  170 (476)
T KOG0646|consen  128 CLKFSD------DGSHIITGSKDGAVLVWLLTDLVSA-------------------------------DNDHSVKPLHIF  170 (476)
T ss_pred             EEEEeC------CCcEEEecCCCccEEEEEEEeeccc-------------------------------ccCCCccceeee
Confidence            999998      9999999999999999998631100                               001122344556


Q ss_pred             cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee-------------------------------------
Q 025649          162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ-------------------------------------  204 (250)
Q Consensus       162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------------------------------------  204 (250)
                      ..|.-+|+.+...+ .+...+++|+|.|.++++||+..+..+.                                     
T Consensus       171 ~~HtlsITDl~ig~-Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~  249 (476)
T KOG0646|consen  171 SDHTLSITDLQIGS-GGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL  249 (476)
T ss_pred             ccCcceeEEEEecC-CCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence            66666666666551 1122456666666666666665543221                                     


Q ss_pred             -----------cccccceeeeeeccCC--ceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          205 -----------TSINNDLLIKNINLNK--KVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       205 -----------~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                                 ..........+.+|.+  .|++++.+- ||..|++|+.||++.|||+
T Consensus       250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             CcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEec
Confidence                       0011234456778888  899999996 9999999999999999996

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.9e-22  Score=141.31  Aligned_cols=228  Identities=17%  Similarity=0.211  Sum_probs=164.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |.|||+.|...-+.|. +|..+|++++||++|+ .|+|+|.|..|.+||+..|.+++.+.+..+    .....+|+...+
T Consensus        47 vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~rirf~sp----v~~~q~hp~k~n  120 (405)
T KOG1273|consen   47 VVIYDFDTFRIARMLS-AHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLKRIRFDSP----VWGAQWHPRKRN  120 (405)
T ss_pred             EEEEEccccchhhhhh-ccccceeEEEecCCCC-EeeeecCCceeEEEeccCCCceeEEEccCc----cceeeeccccCC
Confidence            6799999999988999 9999999999999999 899999999999999999999999886622    122222222111


Q ss_pred             ------------EEecCCC-------------------cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCcc
Q 025649           82 ------------AIAIPDA-------------------DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKG  130 (250)
Q Consensus        82 ------------~~~~~~~-------------------~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  130 (250)
                                  -+.|++.                   .++++.|+++++|...|.+.++|..+.++...++......+.
T Consensus       121 ~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK  200 (405)
T KOG1273|consen  121 KCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIK  200 (405)
T ss_pred             eEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeee
Confidence                        1112210                   246778999999999999999999999888777766567888


Q ss_pred             ceeecccceeEEE------eeeeeeccC------eeeeeeccccC--ccccEEEEEeecCCCCCcEEEEeeC-CCeEEEE
Q 025649          131 SQSTSKVNIRDAE------MEILDQSGG------KRLHLDYSVGG--HTAAASCVAFSMFGERGKYLISGGN-DKLVKVW  195 (250)
Q Consensus       131 ~~~~~~~~~~~~~------~~~~~~~~~------~~~~~~~~~~~--h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iw  195 (250)
                      ++.++..|+.++.      +...+..+.      ...++.++++.  .+-.-.++.|+   .+|.|++.|+. ...++||
T Consensus       201 ~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs---~dgeYv~a~s~~aHaLYIW  277 (405)
T KOG1273|consen  201 QIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS---GDGEYVCAGSARAHALYIW  277 (405)
T ss_pred             EEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec---CCccEEEeccccceeEEEE
Confidence            9999999999883      222222211      01111222221  12234577888   89999988764 5689999


Q ss_pred             ecCCCcceecccccceeeeeeccC-CceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          196 DCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       196 d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .-..|         .+++.+.+.. .....+.|+|- ...+++- ..|.+++|..
T Consensus       278 E~~~G---------sLVKILhG~kgE~l~DV~whp~-rp~i~si-~sg~v~iw~~  321 (405)
T KOG1273|consen  278 EKSIG---------SLVKILHGTKGEELLDVNWHPV-RPIIASI-ASGVVYIWAV  321 (405)
T ss_pred             ecCCc---------ceeeeecCCchhheeecccccc-eeeeeec-cCCceEEEEe
Confidence            99998         6666666666 45778889984 3355555 6889999974

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.9e-22  Score=148.36  Aligned_cols=213  Identities=15%  Similarity=0.195  Sum_probs=164.5

Q ss_pred             eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc-ceecC--C--CCCCCCCCcccCCCceeEEecCC
Q 025649           13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK-IVNFG--L--PENNGNAGQCYNPAFVHAIAIPD   87 (250)
Q Consensus        13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~--~--~~~~~~~~~~~~~~~v~~~~~~~   87 (250)
                      ...+. .|.-+|.+++++|+++ +.++++.||+|.-|++.+++... .++..  .  ...........|...+.+++++|
T Consensus       135 ~~~~~-~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~  212 (479)
T KOG0299|consen  135 FRVIG-KHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS  212 (479)
T ss_pred             ceeec-cccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence            45566 8999999999999999 89999999999999999887552 22210  0  00000000036788999999999


Q ss_pred             CcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeeccCeeeeeeccccCc
Q 025649           88 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSVGGH  164 (250)
Q Consensus        88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h  164 (250)
                            ++++|++|+.|..|.||+.++.+.+..+..+ ...|.+++|-.....+++   ......+.......+.++-+|
T Consensus       213 ------Dgkylatgg~d~~v~Iw~~~t~ehv~~~~gh-r~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH  285 (479)
T KOG0299|consen  213 ------DGKYLATGGRDRHVQIWDCDTLEHVKVFKGH-RGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH  285 (479)
T ss_pred             ------CCcEEEecCCCceEEEecCcccchhhccccc-ccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence                  9999999999999999999998877775554 588999999887666662   122333445566677789999


Q ss_pred             cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649          165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV  244 (250)
Q Consensus       165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  244 (250)
                      ...|.++...   ..++.+-.|+.|+++++|++...          ....+.+|.+.+-+++|..  ...|++||.||.|
T Consensus       286 qd~v~~IdaL---~reR~vtVGgrDrT~rlwKi~ee----------sqlifrg~~~sidcv~~In--~~HfvsGSdnG~I  350 (479)
T KOG0299|consen  286 QDGVLGIDAL---SRERCVTVGGRDRTVRLWKIPEE----------SQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSI  350 (479)
T ss_pred             ccceeeechh---cccceEEeccccceeEEEecccc----------ceeeeeCCCCCeeeEEEec--ccceeeccCCceE
Confidence            9999999887   66666667779999999999653          2235678888999999984  4589999999999


Q ss_pred             EEEeC
Q 025649          245 KVYSI  249 (250)
Q Consensus       245 ~vw~~  249 (250)
                      .+|++
T Consensus       351 aLWs~  355 (479)
T KOG0299|consen  351 ALWSL  355 (479)
T ss_pred             EEeee
Confidence            99986

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=1.3e-22  Score=154.90  Aligned_cols=228  Identities=15%  Similarity=0.163  Sum_probs=156.7

Q ss_pred             CcEEEEcccceeeee--eccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC--ccce-------ecCCCCCC-
Q 025649            1 MWQIIDIRQHCLYKS--LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIV-------NFGLPENN-   68 (250)
Q Consensus         1 ti~iwd~~~~~~~~~--l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~-------~~~~~~~~-   68 (250)
                      |+++||++++++...  +. ||...|.+++|.|..+..|++|+.||.+.|||++-...  ...+       ..+.+... 
T Consensus       123 T~r~Wdvk~s~l~G~~~~~-GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk  201 (720)
T KOG0321|consen  123 TIRPWDVKTSRLVGGRLNL-GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK  201 (720)
T ss_pred             eeeeeeeccceeecceeec-ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence            689999999998877  77 99999999999999988999999999999999974331  0000       00100000 


Q ss_pred             ----CCCCcccCCCc----eeEEecCCCcccCCCCCEEEEEeC-CCeEEEEeCCCceeEeeccCC----------CCCCc
Q 025649           69 ----GNAGQCYNPAF----VHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKST----------TKPLK  129 (250)
Q Consensus        69 ----~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~----------~~~~~  129 (250)
                          .......+...    |+.+.|-       |...|++++. |+.|+|||++...........          ....+
T Consensus       202 p~~kr~~k~kA~s~ti~ssvTvv~fk-------De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~  274 (720)
T KOG0321|consen  202 PLKKRIRKWKAASNTIFSSVTVVLFK-------DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ  274 (720)
T ss_pred             hhhccccccccccCceeeeeEEEEEe-------ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee
Confidence                00111122223    3444444       7888888887 999999999986544332211          12345


Q ss_pred             cceeecccceeEEEeeeeeecc------CeeeeeeccccCcccc---EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649          130 GSQSTSKVNIRDAEMEILDQSG------GKRLHLDYSVGGHTAA---ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  200 (250)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~h~~~---v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~  200 (250)
                      .++..+..|.++++.+. |..+      .....++..+.++...   +.+ ..+   |++.++++|+.|...++|.+.+.
T Consensus       275 ~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~lS---pd~~~l~SgSsd~~ayiw~vs~~  349 (720)
T KOG0321|consen  275 VNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-ELS---PDDCSLLSGSSDEQAYIWVVSSP  349 (720)
T ss_pred             EEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeee-ecC---CCCceEeccCCCcceeeeeecCc
Confidence            66777777888884433 4432      1222334444444322   222 235   89999999999999999999987


Q ss_pred             cceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          201 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .        .....+.+|...|++++|.|..-.-++++++|..+++|++
T Consensus       350 e--------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  350 E--------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             c--------CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence            4        3445678999999999999866556889999999999997

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=2.4e-22  Score=154.70  Aligned_cols=208  Identities=13%  Similarity=0.206  Sum_probs=166.6

Q ss_pred             CcEEEEcccceeee--eeccCCCCCeee-EEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649            1 MWQIIDIRQHCLYK--SLRAGHSSICSS-VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         1 ti~iwd~~~~~~~~--~l~~~h~~~v~~-l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      |+++|+-..++.+.  .+. +|.+.|.. +++-+..++.|++|+.|..+.+|......++..++ +            |.
T Consensus        36 t~~vw~~~~~~~l~~~~~~-~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk-g------------H~  101 (745)
T KOG0301|consen   36 TVKVWAKKGKQYLETHAFE-GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK-G------------HK  101 (745)
T ss_pred             ceeeeeccCcccccceecc-cCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhh-c------------cc
Confidence            57899976665544  355 78888877 88887444579999999999999999999999888 4            68


Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec--cCeee
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS--GGKRL  155 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  155 (250)
                      ..|.++....      ++. +++|+.|.++++|-...  +... ...+...++.++.-|++.++  .|+.|..  ..+..
T Consensus       102 snVC~ls~~~------~~~-~iSgSWD~TakvW~~~~--l~~~-l~gH~asVWAv~~l~e~~~v--TgsaDKtIklWk~~  169 (745)
T KOG0301|consen  102 SNVCSLSIGE------DGT-LISGSWDSTAKVWRIGE--LVYS-LQGHTASVWAVASLPENTYV--TGSADKTIKLWKGG  169 (745)
T ss_pred             cceeeeecCC------cCc-eEecccccceEEecchh--hhcc-cCCcchheeeeeecCCCcEE--eccCcceeeeccCC
Confidence            8999999875      555 99999999999998754  2222 33445788999999998444  3444443  34556


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                      +.+++|.+|..-|..+++-   ++ ..|++++.||.|++|++..          +.+..+.+|++-|+++.... +++.+
T Consensus       170 ~~l~tf~gHtD~VRgL~vl---~~-~~flScsNDg~Ir~w~~~g----------e~l~~~~ghtn~vYsis~~~-~~~~I  234 (745)
T KOG0301|consen  170 TLLKTFSGHTDCVRGLAVL---DD-SHFLSCSNDGSIRLWDLDG----------EVLLEMHGHTNFVYSISMAL-SDGLI  234 (745)
T ss_pred             chhhhhccchhheeeeEEe---cC-CCeEeecCCceEEEEeccC----------ceeeeeeccceEEEEEEecC-CCCeE
Confidence            7788999999999999998   44 5688999999999999954          77888999999999999665 56689


Q ss_pred             EEeeCCceEEEEeC
Q 025649          236 VVCDTSKVVKVYSI  249 (250)
Q Consensus       236 ~s~~~d~~i~vw~~  249 (250)
                      ++++.|+++++|+.
T Consensus       235 vs~gEDrtlriW~~  248 (745)
T KOG0301|consen  235 VSTGEDRTLRIWKK  248 (745)
T ss_pred             EEecCCceEEEeec
Confidence            99999999999974

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=7.3e-22  Score=154.93  Aligned_cols=97  Identities=10%  Similarity=0.132  Sum_probs=85.3

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      ++||++++++.+.+++ ++.+.|+++.-+|--. .++.|..+|+|.+++++.++.+.+|+..             .+.|+
T Consensus       184 lql~Nvrt~K~v~~f~-~~~s~IT~ieqsPaLD-VVaiG~~~G~ViifNlK~dkil~sFk~d-------------~g~Vt  248 (910)
T KOG1539|consen  184 LQLWNVRTGKVVYTFQ-EFFSRITAIEQSPALD-VVAIGLENGTVIIFNLKFDKILMSFKQD-------------WGRVT  248 (910)
T ss_pred             EEEEEeccCcEEEEec-ccccceeEeccCCcce-EEEEeccCceEEEEEcccCcEEEEEEcc-------------cccee
Confidence            6899999999999999 9999999999999888 8999999999999999999999999822             48999


Q ss_pred             EEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCCceeEe
Q 025649           82 AIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNIS  119 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~  119 (250)
                      +++|..      ||+ .+++|+..|.+.+||++..+...
T Consensus       249 slSFrt------DG~p~las~~~~G~m~~wDLe~kkl~~  281 (910)
T KOG1539|consen  249 SLSFRT------DGNPLLASGRSNGDMAFWDLEKKKLIN  281 (910)
T ss_pred             EEEecc------CCCeeEEeccCCceEEEEEcCCCeeee
Confidence            999997      776 55666777999999998765443

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=6.8e-23  Score=139.54  Aligned_cols=210  Identities=16%  Similarity=0.167  Sum_probs=157.9

Q ss_pred             eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC---ccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649           14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP---NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM   90 (250)
Q Consensus        14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   90 (250)
                      +++...|++.|.++...-.|+ .|+||+.|++|+|+..+++..   +.++. +            |..+|..++|.-   
T Consensus         4 q~idt~H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~ll~~L~-G------------h~GPVwqv~wah---   66 (299)
T KOG1332|consen    4 QTIDTQHEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSKLLAELT-G------------HSGPVWKVAWAH---   66 (299)
T ss_pred             eehhhhhhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCceeeeEec-C------------CCCCeeEEeecc---
Confidence            344448999999999988899 899999999999999986543   33343 3            789999999953   


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCceeEee-ccCCCCCCccceeecccc--eeEEEeeeeeeccC-------eeeeeecc
Q 025649           91 LDKTNKICVVAKGDGVVDVINIESELNISR-SKSTTKPLKGSQSTSKVN--IRDAEMEILDQSGG-------KRLHLDYS  160 (250)
Q Consensus        91 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~  160 (250)
                       +.-|.+||+++.||.|.||.-++++-.+. ....+...+.+++|-|.+  ..|+ .++.|+.+.       ..-...+.
T Consensus        67 -Pk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~La-casSDG~vsvl~~~~~g~w~t~ki  144 (299)
T KOG1332|consen   67 -PKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLA-CASSDGKVSVLTYDSSGGWTTSKI  144 (299)
T ss_pred             -cccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEE-EeeCCCcEEEEEEcCCCCccchhh
Confidence             25699999999999999999998854332 334456889999999864  4444 444444421       11112234


Q ss_pred             ccCccccEEEEEeecCCCCC-----------cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649          161 VGGHTAAASCVAFSMFGERG-----------KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       161 ~~~h~~~v~~~~~~p~~~~~-----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                      ...|.-.|+++.|.|-...|           +.|++|+.|..|+||+..++.-       .+-..+.+|.+.|..++|.|
T Consensus       145 ~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w-------~~e~~l~~H~dwVRDVAwaP  217 (299)
T KOG1332|consen  145 VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW-------KLERTLEGHKDWVRDVAWAP  217 (299)
T ss_pred             hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch-------hhhhhhhhcchhhhhhhhcc
Confidence            56899999999999632234           5699999999999999998632       22235789999999999999


Q ss_pred             CCC---CeEEEeeCCceEEEEeC
Q 025649          230 TES---ENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       230 ~~~---~~l~s~~~d~~i~vw~~  249 (250)
                      ..|   ..|++++.||++.||..
T Consensus       218 ~~gl~~s~iAS~SqDg~viIwt~  240 (299)
T KOG1332|consen  218 SVGLPKSTIASCSQDGTVIIWTK  240 (299)
T ss_pred             ccCCCceeeEEecCCCcEEEEEe
Confidence            543   36999999999999964

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=4.3e-22  Score=153.29  Aligned_cols=204  Identities=16%  Similarity=0.151  Sum_probs=160.5

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|.+|.+.+.+++..|+ +|...|.+++...++.  ++|||.|.++++|..  +++...++ +            |+..|
T Consensus        82 ~i~v~~~~~~~P~~~Lk-gH~snVC~ls~~~~~~--~iSgSWD~TakvW~~--~~l~~~l~-g------------H~asV  143 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYTLK-GHKSNVCSLSIGEDGT--LISGSWDSTAKVWRI--GELVYSLQ-G------------HTASV  143 (745)
T ss_pred             eEEEEecCCCCchhhhh-ccccceeeeecCCcCc--eEecccccceEEecc--hhhhcccC-C------------cchhe
Confidence            46789999999999999 9999999999888875  999999999999986  44444554 3            78999


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE--eeeeeeccCeeeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE--MEILDQSGGKRLHLD  158 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  158 (250)
                      +++..-|      ++ .+++|+.|++|++|.-  ++.+..+.. +...++.+++-+++.++..  .|....+.. ..+++
T Consensus       144 WAv~~l~------e~-~~vTgsaDKtIklWk~--~~~l~tf~g-HtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l  212 (745)
T KOG0301|consen  144 WAVASLP------EN-TYVTGSADKTIKLWKG--GTLLKTFSG-HTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVL  212 (745)
T ss_pred             eeeeecC------CC-cEEeccCcceeeeccC--Cchhhhhcc-chhheeeeEEecCCCeEeecCCceEEEEec-cCcee
Confidence            9999987      55 8999999999999987  455566666 4578899999888777653  222223332 45577


Q ss_pred             ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649          159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC  238 (250)
Q Consensus       159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  238 (250)
                      .++.+|..-|++++..   .++..++++++|++++||+....           ...+.-....|+++.+.+ +|+ |++|
T Consensus       213 ~~~~ghtn~vYsis~~---~~~~~Ivs~gEDrtlriW~~~e~-----------~q~I~lPttsiWsa~~L~-NgD-Ivvg  276 (745)
T KOG0301|consen  213 LEMHGHTNFVYSISMA---LSDGLIVSTGEDRTLRIWKKDEC-----------VQVITLPTTSIWSAKVLL-NGD-IVVG  276 (745)
T ss_pred             eeeeccceEEEEEEec---CCCCeEEEecCCceEEEeecCce-----------EEEEecCccceEEEEEee-CCC-EEEe
Confidence            8899999999999977   67889999999999999987732           222223334788888876 665 8999


Q ss_pred             eCCceEEEEeC
Q 025649          239 DTSKVVKVYSI  249 (250)
Q Consensus       239 ~~d~~i~vw~~  249 (250)
                      +.||.|+||..
T Consensus       277 ~SDG~VrVfT~  287 (745)
T KOG0301|consen  277 GSDGRVRVFTV  287 (745)
T ss_pred             ccCceEEEEEe
Confidence            99999999964

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.5e-22  Score=154.31  Aligned_cols=175  Identities=19%  Similarity=0.207  Sum_probs=147.2

Q ss_pred             CcEEEEcccceeeee-eccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~-l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      .|..+|+...+.... +. +|...|..++|++++. +||+|+.|+.+.|||....+++..+. +            |.+.
T Consensus       281 ~I~~~dvR~~~~~~~~~~-~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~-~------------H~aA  345 (484)
T KOG0305|consen  281 KILNHDVRISQHVVSTLQ-GHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFT-E------------HTAA  345 (484)
T ss_pred             cEEEEEEecchhhhhhhh-cccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEe-c------------ccee
Confidence            367788887665555 77 9999999999999999 99999999999999997767666665 3            6899


Q ss_pred             eeEEecCCCcccCCCCCEEEEEe--CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe-ee----eeeccC
Q 025649           80 VHAIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM-EI----LDQSGG  152 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~  152 (250)
                      |.+++|+|     ....+||+|+  .|+.|++||..++..+..+...  ..|..+.|++..+.+++. |.    ...+..
T Consensus       346 VKA~awcP-----~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg--sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~  418 (484)
T KOG0305|consen  346 VKALAWCP-----WQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG--SQVCSLIWSKKYKELLSTHGYSENQITLWKY  418 (484)
T ss_pred             eeEeeeCC-----CccCceEEcCCCcccEEEEEEcCCCcEecccccC--CceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence            99999999     5788999985  6999999999999988777665  799999999999888752 22    122334


Q ss_pred             eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649          153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  200 (250)
Q Consensus       153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~  200 (250)
                      ...+.+..+.+|...|..++++   |+|..+++|+.|.++++|++-..
T Consensus       419 ps~~~~~~l~gH~~RVl~la~S---Pdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  419 PSMKLVAELLGHTSRVLYLALS---PDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             cccceeeeecCCcceeEEEEEC---CCCCEEEEecccCcEEeccccCC
Confidence            4566778899999999999999   89999999999999999999874

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=1e-22  Score=154.57  Aligned_cols=222  Identities=16%  Similarity=0.129  Sum_probs=148.5

Q ss_pred             eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCC-------------------------
Q 025649           12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE-------------------------   66 (250)
Q Consensus        12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~-------------------------   66 (250)
                      +...++ ||++.|.+|+..|.|. .|++|+.||+|+||.+.+|++++++.+...-                         
T Consensus       392 ~~lvyr-GHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  392 CALVYR-GHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             eeeeEe-ccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEe
Confidence            345677 9999999999999999 7999999999999999999998887643100                         


Q ss_pred             -------------------C---CC-------------------CCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC-
Q 025649           67 -------------------N---NG-------------------NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-  104 (250)
Q Consensus        67 -------------------~---~~-------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-  104 (250)
                                         .   ..                   ......|+..|..+.|+.      .|.+|++...+ 
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr------kGDYlatV~~~~  543 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR------KGDYLATVMPDS  543 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec------CCceEEEeccCC
Confidence                               0   00                   001111333444444444      67777666442 


Q ss_pred             --CeEEEEeCCCce-----------------------------------------eEeeccCCCCCCccceeecccceeE
Q 025649          105 --GVVDVINIESEL-----------------------------------------NISRSKSTTKPLKGSQSTSKVNIRD  141 (250)
Q Consensus       105 --~~i~~~d~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  141 (250)
                        ..|.|+++....                                         ....+.. ....+..++++|.|..+
T Consensus       544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~t-g~kwiS~msihp~GDnl  622 (733)
T KOG0650|consen  544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLT-GSKWISSMSIHPNGDNL  622 (733)
T ss_pred             CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhc-CCeeeeeeeecCCCCeE
Confidence              355566554321                                         1111111 12457778899988877


Q ss_pred             EEeeeeeecc-----CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee
Q 025649          142 AEMEILDQSG-----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI  216 (250)
Q Consensus       142 ~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  216 (250)
                      + .++.+...     ....++.+++.-|...+++|+|+   +.-.++++|+.||++.||.-.-...+....---++..+.
T Consensus       623 i-~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H---~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~  698 (733)
T KOG0650|consen  623 I-LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFH---KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR  698 (733)
T ss_pred             E-EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhc---cccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence            7 55544432     12334567888899999999999   778899999999999999644322110000013456677


Q ss_pred             ccCCc----eeEEEecCCCCCeEEEeeCCceEEEE
Q 025649          217 NLNKK----VNWLCTTPTESENLVVCDTSKVVKVY  247 (250)
Q Consensus       217 ~~~~~----v~~~~~~~~~~~~l~s~~~d~~i~vw  247 (250)
                      +|...    |....|+| ..-+|++++.||+|++|
T Consensus       699 gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  699 GHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CceeecccceEeecccC-CCceEEecCCCceEEee
Confidence            88766    88899999 55689999999999998

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.90  E-value=1.7e-21  Score=135.88  Aligned_cols=222  Identities=14%  Similarity=0.062  Sum_probs=167.4

Q ss_pred             eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC-ccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649           11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD   89 (250)
Q Consensus        11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (250)
                      +++..|...+-+.|.|+.|.|++. .|++-. |..|.+|++..+.. +..+...        ....+....++-+|+|  
T Consensus       113 E~v~~Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss--------~s~e~~~~ftsg~Wsp--  180 (370)
T KOG1007|consen  113 ECVASLDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSS--------ESAEMRHSFTSGAWSP--  180 (370)
T ss_pred             hHhhcCCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheeeccc--------ccccccceecccccCC--
Confidence            445556545667999999999998 677665 88999999987765 3333321        0111455677888998  


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----cc-CeeeeeeccccCc
Q 025649           90 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SG-GKRLHLDYSVGGH  164 (250)
Q Consensus        90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~h  164 (250)
                        +.+++.+++. .|+++..||+++......+...+...+..+.|+|+-++++..+..|+    ++ +....++.++.+|
T Consensus       181 --HHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H  257 (370)
T KOG1007|consen  181 --HHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH  257 (370)
T ss_pred             --CCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC
Confidence              4578888776 67999999999988888888888899999999999888875443333    22 2345578899999


Q ss_pred             cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee----------------ccc----ccceeeeeeccCCceeE
Q 025649          165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ----------------TSI----NNDLLIKNINLNKKVNW  224 (250)
Q Consensus       165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----------------~~~----~~~~~~~~~~~~~~v~~  224 (250)
                      ...|.++.|+|  ...+++++|+.|..|.+|...+-...+                ...    ....+..+..|+..|++
T Consensus       258 sHWvW~VRfn~--~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~  335 (370)
T KOG1007|consen  258 SHWVWAVRFNP--EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA  335 (370)
T ss_pred             ceEEEEEEecC--ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEE
Confidence            99999999997  456899999999999999765432110                000    12334577889999999


Q ss_pred             EEecCCCCCeEEEeeCCceEEEEeC
Q 025649          225 LCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       225 ~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ++|++.|+-.||+-+.||.+.|=++
T Consensus       336 ~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  336 LAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             EeeccCCCeeEEEeccCceEEeecC
Confidence            9999999999999999999877544

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.5e-20  Score=127.20  Aligned_cols=216  Identities=13%  Similarity=0.101  Sum_probs=153.7

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCC----CCcccCCCceeEEecCCCcccCCCC
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN----AGQCYNPAFVHAIAIPDADMLDKTN   95 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~   95 (250)
                      .+..|.+++|+|.|. +.+.|+...+.++--...-..++.-.  .....++    ..-.-|...|+|.+|+|      +|
T Consensus        31 dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~h--ea~~~pp~v~~kr~khhkgsiyc~~ws~------~g  101 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAH--EAAKQPPSVLCKRNKHHKGSIYCTAWSP------CG  101 (350)
T ss_pred             chhheeeEEecCCCc-eEEeccCCceEEEEccccccCccccc--ccccCCCeEEeeeccccCccEEEEEecC------cc
Confidence            567899999999999 89999999999987543221111000  0000000    01122778999999999      99


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeEee----ccCCCCCCccceeeccc----ceeEEEeeeeee----ccCeeeeeeccccC
Q 025649           96 KICVVAKGDGVVDVINIESELNISR----SKSTTKPLKGSQSTSKV----NIRDAEMEILDQ----SGGKRLHLDYSVGG  163 (250)
Q Consensus        96 ~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~  163 (250)
                      .++++|+.|++|++.-.+.......    ....+...+..++|-.+    +..+++.|.-|.    .+....+.++.+.+
T Consensus       102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg  181 (350)
T KOG0641|consen  102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG  181 (350)
T ss_pred             CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence            9999999999999987765433221    12234577888888543    556665333332    23456667788999


Q ss_pred             ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee---------------------------------------
Q 025649          164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ---------------------------------------  204 (250)
Q Consensus       164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---------------------------------------  204 (250)
                      |.+.|.++- +   =+|-++++|+.|.+|++||++-..++.                                       
T Consensus       182 htghilaly-s---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l  257 (350)
T KOG0641|consen  182 HTGHILALY-S---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML  257 (350)
T ss_pred             CcccEEEEE-E---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence            999988773 3   357899999999999999997654432                                       


Q ss_pred             -cccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          205 -TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       205 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                       .+..+.+++.+..|+..|.++.|+| ...++++|+.|.+|++=|+
T Consensus       258 ydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdl  302 (350)
T KOG0641|consen  258 YDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDL  302 (350)
T ss_pred             EEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeec
Confidence             1234567778889999999999998 7789999999999999876

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=4.9e-21  Score=135.17  Aligned_cols=200  Identities=16%  Similarity=0.263  Sum_probs=148.2

Q ss_pred             eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649           13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD   92 (250)
Q Consensus        13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   92 (250)
                      ..++.  |.. -.|+.|++.|. +||+|..||.|.|||+.+...-+.+..             |..+|.+++|++     
T Consensus        18 ~~tld--~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~lsa-------------H~~pi~sl~WS~-----   75 (405)
T KOG1273|consen   18 THTLD--NPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLSA-------------HVRPITSLCWSR-----   75 (405)
T ss_pred             ceecc--CCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhhc-------------cccceeEEEecC-----
Confidence            34555  233 68999999999 999999999999999998876666652             578999999999     


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc-----Ceeeeeecccc--Ccc
Q 025649           93 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG-----GKRLHLDYSVG--GHT  165 (250)
Q Consensus        93 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~h~  165 (250)
                       +|+.|++++.|..|.+||+..|....++...  .++....|+|..+..+.+...+..-     ....+.+-...  +..
T Consensus        76 -dgr~LltsS~D~si~lwDl~~gs~l~rirf~--spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl  152 (405)
T KOG1273|consen   76 -DGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD--SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL  152 (405)
T ss_pred             -CCCEeeeecCCceeEEEeccCCCceeEEEcc--CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc
Confidence             9999999999999999999999988888776  7899999998654443222222110     00111000000  111


Q ss_pred             -ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC-CceeEEEecCCCCCeEEEeeCCce
Q 025649          166 -AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVCDTSKV  243 (250)
Q Consensus       166 -~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~  243 (250)
                       ....+..|.   +.|+++++|...|.+.++|..+.         +++..+.-.. ..|..+.++- .|+.|+.-+.|+.
T Consensus       153 n~sas~~~fd---r~g~yIitGtsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRv  219 (405)
T KOG1273|consen  153 NSSASHGVFD---RRGKYIITGTSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRV  219 (405)
T ss_pred             cccccccccc---CCCCEEEEecCcceEEEEecchh---------eeeeeeeechheeeeEEEEec-cCcEEEEecCCce
Confidence             112233566   88999999999999999999998         4444444444 6788888875 8999999999999


Q ss_pred             EEEEeCC
Q 025649          244 VKVYSIS  250 (250)
Q Consensus       244 i~vw~~~  250 (250)
                      |+.|+++
T Consensus       220 IR~ye~~  226 (405)
T KOG1273|consen  220 IRTYEIS  226 (405)
T ss_pred             EEEEehh
Confidence            9999863

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.89  E-value=1.1e-20  Score=140.93  Aligned_cols=221  Identities=14%  Similarity=0.065  Sum_probs=161.3

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCC------------CC--
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL------------PE--   66 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~------------~~--   66 (250)
                      +|.||+..+.+..+... .|.+.|.+++...+|.  |++|+.|..|..|| ..-+.++..+.+.            ++  
T Consensus       268 ~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~  343 (626)
T KOG2106|consen  268 NILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGT--LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDIL  343 (626)
T ss_pred             eEEEEeCCCceEEeEee-ecCCceEEEEEecCcc--EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEE
Confidence            47899999999988888 9999999999999996  77799999999999 3333333322111            00  


Q ss_pred             --------------CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccce
Q 025649           67 --------------NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ  132 (250)
Q Consensus        67 --------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  132 (250)
                                    ..-......|.+....++.+|      +..++++++.|+.+++|+  ..+........  .+..++
T Consensus       344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp------s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~--d~~~~~  413 (626)
T KOG2106|consen  344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP------SKNQLLTCGQDKHVRLWN--DHKLEWTKIIE--DPAECA  413 (626)
T ss_pred             EeeccceEEEeeecCCceEEEEecccceeeEEcCC------ChhheeeccCcceEEEcc--CCceeEEEEec--CceeEe
Confidence                          000012233556777888888      899999999999999999  44444333332  678899


Q ss_pred             eecccceeEEE---eeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccc
Q 025649          133 STSKVNIRDAE---MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN  209 (250)
Q Consensus       133 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  209 (250)
                      .|+|.| .++.   .|.|-..+.+....+.. .....++++++|+   |+|.+||.|+.|+.|+||-+.....       
T Consensus       414 ~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~-~~d~~~ls~v~ys---p~G~~lAvgs~d~~iyiy~Vs~~g~-------  481 (626)
T KOG2106|consen  414 DFHPSG-VVAVGTATGRWFVLDTETQDLVTI-HTDNEQLSVVRYS---PDGAFLAVGSHDNHIYIYRVSANGR-------  481 (626)
T ss_pred             eccCcc-eEEEeeccceEEEEecccceeEEE-EecCCceEEEEEc---CCCCEEEEecCCCeEEEEEECCCCc-------
Confidence            999999 5552   34444444444333333 2337889999999   8999999999999999998876532       


Q ss_pred             ceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          210 DLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      ...+.-+.+.++|+.+.|++ |++++.+-+-|-.|..|.
T Consensus       482 ~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  482 KYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             EEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEEc
Confidence            22233344558999999997 999999999999999994

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.88  E-value=7.3e-21  Score=149.41  Aligned_cols=213  Identities=16%  Similarity=0.173  Sum_probs=164.6

Q ss_pred             cEEEEccccee-eeeecc----CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            2 WQIIDIRQHCL-YKSLRA----GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         2 i~iwd~~~~~~-~~~l~~----~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      ++-|+..+... ...|..    .-...+++++.++.|. +.+.|...|+|-+|++++|.....+-          ....|
T Consensus       424 ~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQSGi~r~sf~----------~~~ah  492 (910)
T KOG1539|consen  424 AYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQSGIHRKSFG----------DSPAH  492 (910)
T ss_pred             EEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEcccCeeecccc----------cCccc
Confidence            46788775544 334440    1236899999999999 88899999999999999998777762          01126


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccC
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGG  152 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  152 (250)
                      ...|.+++...      -++.+++++.+|.+++||......+......  ..+.++.++.....++ +...+.    .+.
T Consensus       493 ~~~V~gla~D~------~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~--~~~~~iv~hr~s~l~a-~~~ddf~I~vvD~  563 (910)
T KOG1539|consen  493 KGEVTGLAVDG------TNRLLVSAGADGILKFWDFKKKVLKKSLRLG--SSITGIVYHRVSDLLA-IALDDFSIRVVDV  563 (910)
T ss_pred             cCceeEEEecC------CCceEEEccCcceEEEEecCCcceeeeeccC--CCcceeeeeehhhhhh-hhcCceeEEEEEc
Confidence            78999999876      7889999999999999999987766655554  5667777777666665 222222    233


Q ss_pred             eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649          153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES  232 (250)
Q Consensus       153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (250)
                      ...+.++.|.+|.+.|+.++||   |+|++|++++.|++|++||+.++         .++ .......++..+.++| +|
T Consensus       564 ~t~kvvR~f~gh~nritd~~FS---~DgrWlisasmD~tIr~wDlpt~---------~lI-D~~~vd~~~~sls~SP-ng  629 (910)
T KOG1539|consen  564 VTRKVVREFWGHGNRITDMTFS---PDGRWLISASMDSTIRTWDLPTG---------TLI-DGLLVDSPCTSLSFSP-NG  629 (910)
T ss_pred             hhhhhhHHhhccccceeeeEeC---CCCcEEEEeecCCcEEEEeccCc---------cee-eeEecCCcceeeEECC-CC
Confidence            4445678899999999999999   99999999999999999999997         333 3345667889999998 89


Q ss_pred             CeEEEeeCC-ceEEEEe
Q 025649          233 ENLVVCDTS-KVVKVYS  248 (250)
Q Consensus       233 ~~l~s~~~d-~~i~vw~  248 (250)
                      ++|||...| .-|++|-
T Consensus       630 D~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  630 DFLATVHVDQNGIYLWS  646 (910)
T ss_pred             CEEEEEEecCceEEEEE
Confidence            999999887 6799994

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.88  E-value=5.6e-20  Score=138.05  Aligned_cols=212  Identities=14%  Similarity=0.091  Sum_probs=145.5

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||..+++.+..+. .+.. +..++|+|+++.++++++.|+.|++||+++++.+..+..+              ..+
T Consensus        54 ~v~~~d~~~~~~~~~~~-~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~--------------~~~  117 (300)
T TIGR03866        54 TIQVIDLATGEVIGTLP-SGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG--------------VEP  117 (300)
T ss_pred             eEEEEECCCCcEEEecc-CCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC--------------CCc
Confidence            47899999998888787 5544 5688999999844456677899999999987766666422              345


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCC-eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee----eeeccCeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDG-VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI----LDQSGGKRL  155 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  155 (250)
                      .+++++|      +++++++++.++ .+.+||.++++........  .....++|+|+++.++..+.    ...++....
T Consensus       118 ~~~~~~~------dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~  189 (300)
T TIGR03866       118 EGMAVSP------DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD--QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR  189 (300)
T ss_pred             ceEEECC------CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC--CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence            7799998      999999888765 5678899887665443322  34567899999998863221    112222222


Q ss_pred             eeeccccCc-----c--ccEEEEEeecCCCCCcEEEE-eeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEe
Q 025649          156 HLDYSVGGH-----T--AAASCVAFSMFGERGKYLIS-GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT  227 (250)
Q Consensus       156 ~~~~~~~~h-----~--~~v~~~~~~p~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  227 (250)
                      +.+..+..+     .  .....++|+   |++++++. .+.++.+.+||++++         +.... ..+...+.+++|
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~i~~s---~dg~~~~~~~~~~~~i~v~d~~~~---------~~~~~-~~~~~~~~~~~~  256 (300)
T TIGR03866       190 KVIKKITFEIPGVHPEAVQPVGIKLT---KDGKTAFVALGPANRVAVVDAKTY---------EVLDY-LLVGQRVWQLAF  256 (300)
T ss_pred             eeeeeeeecccccccccCCccceEEC---CCCCEEEEEcCCCCeEEEEECCCC---------cEEEE-EEeCCCcceEEE
Confidence            222222211     1  123467888   88887554 445678999999886         33222 234457889999


Q ss_pred             cCCCCCeEEEe-eCCceEEEEeCC
Q 025649          228 TPTESENLVVC-DTSKVVKVYSIS  250 (250)
Q Consensus       228 ~~~~~~~l~s~-~~d~~i~vw~~~  250 (250)
                      +| ++++|+++ +.++.|++||++
T Consensus       257 ~~-~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       257 TP-DEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             CC-CCCEEEEEcCCCCeEEEEECC
Confidence            98 88888775 569999999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.9e-21  Score=137.43  Aligned_cols=187  Identities=17%  Similarity=0.277  Sum_probs=147.3

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCC-CCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPW-KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +|++||..+++.+..++ ++...++.+.|..+ +.+.+.+|+.||+|++||++.......+.....          .+.+
T Consensus        51 sv~lyd~~tg~~l~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~----------~~~~  119 (376)
T KOG1188|consen   51 SVRLYDKGTGQLLEEFK-GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ----------SGTP  119 (376)
T ss_pred             eEEEEeccchhhhheec-CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC----------CCCc
Confidence            58999999999999999 99999999999774 555899999999999999998877666664421          1245


Q ss_pred             eeEEecCCCcccCCCCCEEEEEe----CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeee
Q 025649           80 VHAIAIPDADMLDKTNKICVVAK----GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL  155 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (250)
                      ..+++.+.      +++++++|.    .+-.|.+||++..+...                                    
T Consensus       120 f~~ld~nc------k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l------------------------------------  157 (376)
T KOG1188|consen  120 FICLDLNC------KKNIIACGTELTRSDASVVLWDVRSEQQLL------------------------------------  157 (376)
T ss_pred             ceEeeccC------cCCeEEeccccccCceEEEEEEeccccchh------------------------------------
Confidence            67777775      778888885    46789999999754211                                    


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                        -.-...|...|+++.|+|  .+-++|++||.||.|.+||++.....      ..+.....|...|..+.|..+.=+.|
T Consensus       158 --~~~~eSH~DDVT~lrFHP--~~pnlLlSGSvDGLvnlfD~~~d~Ee------DaL~~viN~~sSI~~igw~~~~ykrI  227 (376)
T KOG1188|consen  158 --RQLNESHNDDVTQLRFHP--SDPNLLLSGSVDGLVNLFDTKKDNEE------DALLHVINHGSSIHLIGWLSKKYKRI  227 (376)
T ss_pred             --hhhhhhccCcceeEEecC--CCCCeEEeecccceEEeeecCCCcch------hhHHHhhcccceeeeeeeecCCcceE
Confidence              113467999999999997  55689999999999999999886332      45556678889999999997332458


Q ss_pred             EEeeCCceEEEEeCC
Q 025649          236 VVCDTSKVVKVYSIS  250 (250)
Q Consensus       236 ~s~~~d~~i~vw~~~  250 (250)
                      .+-+......+|+++
T Consensus       228 ~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  228 MCLTHMETFAIYELE  242 (376)
T ss_pred             EEEEccCceeEEEcc
Confidence            888889999999874

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=2.6e-21  Score=135.45  Aligned_cols=163  Identities=18%  Similarity=0.167  Sum_probs=134.6

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      +|.-.|.++.|-|-...++.++|.|.++++||.++.+....|+              .++.|++-+++|.+.   ...++
T Consensus        99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~--------------me~~VYshamSp~a~---sHcLi  161 (397)
T KOG4283|consen   99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK--------------MEGKVYSHAMSPMAM---SHCLI  161 (397)
T ss_pred             cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee--------------cCceeehhhcChhhh---cceEE
Confidence            7888999999999877699999999999999999999888888              347899999998654   45688


Q ss_pred             EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee-------ccC------------eeeeeec
Q 025649           99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ-------SGG------------KRLHLDY  159 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~------------~~~~~~~  159 (250)
                      |+|..|-.|++.|+.+|.....+..+ ...+..+.|+|...+++..+..|+       +-.            .....++
T Consensus       162 A~gtr~~~VrLCDi~SGs~sH~LsGH-r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~  240 (397)
T KOG4283|consen  162 AAGTRDVQVRLCDIASGSFSHTLSGH-RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK  240 (397)
T ss_pred             EEecCCCcEEEEeccCCcceeeeccc-cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc
Confidence            99999999999999999988877766 488999999999999986554433       311            1122223


Q ss_pred             cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcc
Q 025649          160 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  202 (250)
Q Consensus       160 ~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~  202 (250)
                      .-.+|.+.+..++|+   .++.++++++.|..+++|+..++..
T Consensus       241 ~n~ah~gkvngla~t---Sd~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  241 TNTAHYGKVNGLAWT---SDARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             ccccccceeeeeeec---ccchhhhhccCccceEEeecccCcc
Confidence            345788999999999   9999999999999999999988754

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.88  E-value=1.9e-21  Score=156.48  Aligned_cols=185  Identities=15%  Similarity=0.164  Sum_probs=143.2

Q ss_pred             CCCCeeeEEEcCCCCeEEEEec--CCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC
Q 025649           20 HSSICSSVQFIPWKPWEVISGG--LDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK   96 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s--~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (250)
                      +...|.++..+|++. .++||+  .||.+++|+...- +........  -...-.....|...|.|+.|+|      ||+
T Consensus        12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~--l~k~l~~m~~h~~sv~CVR~S~------dG~   82 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNEN--LPKHLCTMDDHDGSVNCVRFSP------DGS   82 (942)
T ss_pred             CCeeEEEEEecCCce-eEecCCccccccceeeccccccchhhhhhcc--cchhheeeccccCceeEEEECC------CCC
Confidence            345799999999999 899999  8999999997531 111100000  0011123334788999999999      999


Q ss_pred             EEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-eeeccCeeeeeeccccCccccEEEEEeec
Q 025649           97 ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-LDQSGGKRLHLDYSVGGHTAAASCVAFSM  175 (250)
Q Consensus        97 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  175 (250)
                      +||+|+.|+.|.+|+... ......                      .+. ......+.-+....+.+|...|..+.|+ 
T Consensus        83 ~lAsGSDD~~v~iW~~~~-~~~~~~----------------------fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-  138 (942)
T KOG0973|consen   83 YLASGSDDRLVMIWERAE-IGSGTV----------------------FGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-  138 (942)
T ss_pred             eEeeccCcceEEEeeecc-cCCccc----------------------ccccccccccceeeEEEEEecCCCccceeccC-
Confidence            999999999999999874 100000                      000 0111234556677899999999999999 


Q ss_pred             CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          176 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       176 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                        |++.+|++++.|++|.||+.++.         +.+..+.+|.+.|..+.|.| -|++|++-+.|++|++|++
T Consensus       139 --p~~~~lvS~s~DnsViiwn~~tF---------~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt  200 (942)
T KOG0973|consen  139 --PDDSLLVSVSLDNSVIIWNAKTF---------ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRT  200 (942)
T ss_pred             --CCccEEEEecccceEEEEccccc---------eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEc
Confidence              89999999999999999999998         77889999999999999998 8999999999999999985

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.88  E-value=8.5e-20  Score=137.09  Aligned_cols=212  Identities=14%  Similarity=0.053  Sum_probs=143.4

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+.+++.+..+. .+.. +.+++|+|+++.++++++.++.|++||..+++....+..+              ..+
T Consensus        12 ~v~~~d~~t~~~~~~~~-~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--------------~~~   75 (300)
T TIGR03866        12 TISVIDTATLEVTRTFP-VGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG--------------PDP   75 (300)
T ss_pred             EEEEEECCCCceEEEEE-CCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC--------------CCc
Confidence            47899999999998888 6544 6789999999844467888999999999988776655422              234


Q ss_pred             eEEecCCCcccCCCCCEEEEE-eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeee
Q 025649           81 HAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRL  155 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  155 (250)
                      ..+.++|      +++.++++ +.++.+++||+++.+....+...  ..+..++++|+|..++......    ..+....
T Consensus        76 ~~~~~~~------~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~  147 (300)
T TIGR03866        76 ELFALHP------NGKILYIANEDDNLVTVIDIETRKVLAEIPVG--VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY  147 (300)
T ss_pred             cEEEECC------CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC--CCcceEEECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            5678888      88877554 56899999999987766555432  3467899999999988422110    1112222


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEE-eeCCCeEEEEecCCCcceecccccceeeeeec-----cC--CceeEEEe
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLIS-GGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-----LN--KKVNWLCT  227 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~--~~v~~~~~  227 (250)
                      +....+. ....+.+++|+   +++++++. +..++.|++||+++++..         ..+..     +.  .....+++
T Consensus       148 ~~~~~~~-~~~~~~~~~~s---~dg~~l~~~~~~~~~v~i~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~  214 (300)
T TIGR03866       148 EIVDNVL-VDQRPRFAEFT---ADGKELWVSSEIGGTVSVIDVATRKVI---------KKITFEIPGVHPEAVQPVGIKL  214 (300)
T ss_pred             eEEEEEE-cCCCccEEEEC---CCCCEEEEEcCCCCEEEEEEcCcceee---------eeeeecccccccccCCccceEE
Confidence            2222221 12345678999   88887754 456999999999987432         22111     11  12346788


Q ss_pred             cCCCCCeEEE-eeCCceEEEEeCC
Q 025649          228 TPTESENLVV-CDTSKVVKVYSIS  250 (250)
Q Consensus       228 ~~~~~~~l~s-~~~d~~i~vw~~~  250 (250)
                      +| ++++++. .+.++.+.+||++
T Consensus       215 s~-dg~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       215 TK-DGKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             CC-CCCEEEEEcCCCCeEEEEECC
Confidence            87 7776544 4557789999863

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=2.3e-20  Score=144.08  Aligned_cols=216  Identities=14%  Similarity=0.166  Sum_probs=157.5

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      +.+||+..|.++++++ +|.+.|.|++|+.+|+ .+++|+.|..|.+|+.+   ....++..            |.+.|.
T Consensus        35 lliyD~ndG~llqtLK-gHKDtVycVAys~dGk-rFASG~aDK~VI~W~~k---lEG~LkYS------------H~D~IQ   97 (1081)
T KOG1538|consen   35 LLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSK---LEGILKYS------------HNDAIQ   97 (1081)
T ss_pred             EEEEeCCCcccccccc-cccceEEEEEEccCCc-eeccCCCceeEEEeccc---ccceeeec------------cCCeee
Confidence            5789999999999999 9999999999999999 89999999999999854   22333333            667777


Q ss_pred             EEecCCC---------------------------------cccCCCCCEEEEEeCCCeEEEEeCCCcee-EeeccCCCCC
Q 025649           82 AIAIPDA---------------------------------DMLDKTNKICVVAKGDGVVDVINIESELN-ISRSKSTTKP  127 (250)
Q Consensus        82 ~~~~~~~---------------------------------~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~  127 (250)
                      ||.|+|.                                 ..+..||++++.|-.||+|.+-+...... ..........
T Consensus        98 CMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Ns  177 (1081)
T KOG1538|consen   98 CMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNS  177 (1081)
T ss_pred             EeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCC
Confidence            7777774                                 12245899999999999999986654332 2333444568


Q ss_pred             Cccceeecccce-----eEEEeeeeeeccC---eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC
Q 025649          128 LKGSQSTSKVNI-----RDAEMEILDQSGG---KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  199 (250)
Q Consensus       128 ~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~  199 (250)
                      ++.+++|+|...     .++ +..|..+..   -..+.+.+-+.-.-...|+.+.   ++|.|++.|+.|+.+.+|--+.
T Consensus       178 piwsi~~~p~sg~G~~di~a-V~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf---~NGEy~LiGGsdk~L~~fTR~G  253 (1081)
T KOG1538|consen  178 PIWSICWNPSSGEGRNDILA-VADWGQTLSFYQLSGKQIGKDRALNFDPCCISYF---TNGEYILLGGSDKQLSLFTRDG  253 (1081)
T ss_pred             CceEEEecCCCCCCccceEE-EEeccceeEEEEecceeecccccCCCCchhheec---cCCcEEEEccCCCceEEEeecC
Confidence            999999999642     222 222322211   0111111111122345688888   8999999999999999996554


Q ss_pred             CcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          200 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                                -.+.+.......|++++..| ++++++.|+.||+|-.|++
T Consensus       254 ----------vrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  254 ----------VRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             ----------eEEeeccccceeEEEEEEcc-CCceEEEEEccCeeehhhh
Confidence                      44455556667899999998 8999999999999988875

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=4.7e-21  Score=148.72  Aligned_cols=217  Identities=11%  Similarity=0.109  Sum_probs=169.5

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCC--CCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      +++|||+..-+....+. +|...|.|+.|+.-  +..+|++++.|.-|.++|+... .++.++. +            |.
T Consensus       482 nlrVy~Lq~l~~~~~~e-AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld-~------------HS  547 (1080)
T KOG1408|consen  482 NLRVYDLQELEYTCFME-AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD-G------------HS  547 (1080)
T ss_pred             ceEEEEehhhhhhhhee-cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc-c------------cc
Confidence            58999999999999999 99999999999852  2238999999999999998643 4555554 2            67


Q ss_pred             CceeEEecCCCcccCCCC--CEEEEEeCCCeEEEEeCCC---ceeE-eeccCCCCCCccceeecccceeEEEe------e
Q 025649           78 AFVHAIAIPDADMLDKTN--KICVVAKGDGVVDVINIES---ELNI-SRSKSTTKPLKGSQSTSKVNIRDAEM------E  145 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~--~~l~~~~~d~~i~~~d~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~  145 (250)
                      ..|+++.|..      +|  ..+++++.|+.|++--.+.   +... ..-....+..+..++..|..+++++.      .
T Consensus       548 ssITsvKFa~------~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir  621 (1080)
T KOG1408|consen  548 SSITSVKFAC------NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR  621 (1080)
T ss_pred             cceeEEEEee------cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceE
Confidence            8999999986      44  6889999999877644432   2211 11112223678889999999999863      2


Q ss_pred             eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649          146 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL  225 (250)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (250)
                      .++....+..+..+.-.+|.+....+...   |.|.|+++.+.|+++.++|.-++         +++....+|...|+.+
T Consensus       622 if~i~sgKq~k~FKgs~~~eG~lIKv~lD---PSgiY~atScsdktl~~~Df~sg---------EcvA~m~GHsE~VTG~  689 (1080)
T KOG1408|consen  622 IFDIESGKQVKSFKGSRDHEGDLIKVILD---PSGIYLATSCSDKTLCFVDFVSG---------ECVAQMTGHSEAVTGV  689 (1080)
T ss_pred             EEeccccceeeeecccccCCCceEEEEEC---CCccEEEEeecCCceEEEEeccc---------hhhhhhcCcchheeee
Confidence            34444444444334445677788888888   89999999999999999999998         7778899999999999


Q ss_pred             EecCCCCCeEEEeeCCceEEEEeCC
Q 025649          226 CTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       226 ~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .|.+ |.++|++.+.||.|.||.++
T Consensus       690 kF~n-DCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  690 KFLN-DCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             eecc-cchhheeecCCceEEEEECc
Confidence            9997 89999999999999999874

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.7e-20  Score=147.60  Aligned_cols=207  Identities=14%  Similarity=0.132  Sum_probs=152.6

Q ss_pred             eccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649           16 LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT   94 (250)
Q Consensus        16 l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (250)
                      ++.+|+...+.|+|.|+|+ .|++|+.||.|++|+..+. +....+.             .+...|.+++.        +
T Consensus         8 lRyaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~ti~-------------~~g~~v~~ia~--------~   65 (933)
T KOG1274|consen    8 LRYAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPETID-------------ISGELVSSIAC--------Y   65 (933)
T ss_pred             chhhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCchhh-------------ccCceeEEEee--------c
Confidence            3347999999999999999 8999999999999998665 3333332             12456677665        4


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc----CeeeeeeccccCccccEEE
Q 025649           95 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASC  170 (250)
Q Consensus        95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~  170 (250)
                      +++|++|+.+++|.+|...+++.-..+.. ...++.+++++-+|.+++ .|+.|...    .........+++|.++|.+
T Consensus        66 s~~f~~~s~~~tv~~y~fps~~~~~iL~R-ftlp~r~~~v~g~g~~ia-agsdD~~vK~~~~~D~s~~~~lrgh~apVl~  143 (933)
T KOG1274|consen   66 SNHFLTGSEQNTVLRYKFPSGEEDTILAR-FTLPIRDLAVSGSGKMIA-AGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ  143 (933)
T ss_pred             ccceEEeeccceEEEeeCCCCCccceeee-eeccceEEEEecCCcEEE-eecCceeEEEEeccccchheeecccCCceee
Confidence            56999999999999999988654322111 125788999999999998 55544432    2233345678999999999


Q ss_pred             EEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecc-----------------------------------------ccc
Q 025649          171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS-----------------------------------------INN  209 (250)
Q Consensus       171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----------------------------------------~~~  209 (250)
                      +.|+   |++++||+.+-||.|++||+.++....+.                                         ..-
T Consensus       144 l~~~---p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w  220 (933)
T KOG1274|consen  144 LSYD---PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW  220 (933)
T ss_pred             eeEc---CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence            9999   89999999999999999999877543200                                         000


Q ss_pred             ceee--eeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          210 DLLI--KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       210 ~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +...  ....+...+..+.|+| .|+|||+++.||.|.|||+.
T Consensus       221 e~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  221 ELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             eeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEecc
Confidence            0001  1122344588899998 79999999999999999973

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=9e-21  Score=141.35  Aligned_cols=198  Identities=15%  Similarity=0.130  Sum_probs=159.1

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|+|||++...+.+.++ +|.+.|+++.++.... +|++++..|.|.|..+.++.....|..+            ....|
T Consensus       102 ~Vkiwdl~~kl~hr~lk-dh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~------------sgqsv  167 (673)
T KOG4378|consen  102 CVKIWDLRAKLIHRFLK-DHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTID------------SGQSV  167 (673)
T ss_pred             eeeehhhHHHHHhhhcc-CCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecC------------CCCeE
Confidence            58999999878888899 9999999999999998 9999999999999999998877777644            23456


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----cCeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLH  156 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  156 (250)
                      .-+.++|     ....+|.+++.+|.|.+||+............+..+...++|+|.+..++..-..|..    +.....
T Consensus       168 Rll~ys~-----skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~  242 (673)
T KOG4378|consen  168 RLLRYSP-----SKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA  242 (673)
T ss_pred             EEeeccc-----ccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence            6889998     3556778889999999999998888888888888999999999988776642222221    111111


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                      ....+ ....+...++|+   ++|.+|+.|+..|.|..||++..+        .++.....|...|++++|-|
T Consensus       243 s~~~l-~y~~Plstvaf~---~~G~~L~aG~s~G~~i~YD~R~~k--------~Pv~v~sah~~sVt~vafq~  303 (673)
T KOG4378|consen  243 STDRL-TYSHPLSTVAFS---ECGTYLCAGNSKGELIAYDMRSTK--------APVAVRSAHDASVTRVAFQP  303 (673)
T ss_pred             cccee-eecCCcceeeec---CCceEEEeecCCceEEEEecccCC--------CCceEeeecccceeEEEeee
Confidence            11222 234577899999   899999999999999999999874        56778889999999999986

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=6.2e-21  Score=138.27  Aligned_cols=168  Identities=14%  Similarity=0.224  Sum_probs=131.3

Q ss_pred             eccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCC
Q 025649           16 LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN   95 (250)
Q Consensus        16 l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   95 (250)
                      +. ||+++|..++|+|.+...|||||.|.+|.||.+..+-....+.      .....+..|...|--++|+|     .-.
T Consensus        77 v~-GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------epvv~L~gH~rrVg~V~wHP-----tA~  144 (472)
T KOG0303|consen   77 VC-GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------EPVVELYGHQRRVGLVQWHP-----TAP  144 (472)
T ss_pred             cc-CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------cceEEEeecceeEEEEeecc-----cch
Confidence            44 9999999999999887799999999999999997665444333      11233445888999999999     467


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeec
Q 025649           96 KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM  175 (250)
Q Consensus        96 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  175 (250)
                      +.|++++.|++|.+||+.+++.+.                                        ++. |...|+++.|+ 
T Consensus       145 NVLlsag~Dn~v~iWnv~tgeali----------------------------------------~l~-hpd~i~S~sfn-  182 (472)
T KOG0303|consen  145 NVLLSAGSDNTVSIWNVGTGEALI----------------------------------------TLD-HPDMVYSMSFN-  182 (472)
T ss_pred             hhHhhccCCceEEEEeccCCceee----------------------------------------ecC-CCCeEEEEEec-
Confidence            899999999999999999876332                                        334 88999999999 


Q ss_pred             CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCc-eeEEEecCCCCCeEEEee---CCceEEEEeC
Q 025649          176 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK-VNWLCTTPTESENLVVCD---TSKVVKVYSI  249 (250)
Q Consensus       176 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~---~d~~i~vw~~  249 (250)
                        .+|.+|++.+.|+.|+|||.+++         +++..-.+|.+. ...+.|- .++.++.||-   .++.+-+||-
T Consensus       183 --~dGs~l~TtckDKkvRv~dpr~~---------~~v~e~~~heG~k~~Raifl-~~g~i~tTGfsr~seRq~aLwdp  248 (472)
T KOG0303|consen  183 --RDGSLLCTTCKDKKVRVIDPRRG---------TVVSEGVAHEGAKPARAIFL-ASGKIFTTGFSRMSERQIALWDP  248 (472)
T ss_pred             --cCCceeeeecccceeEEEcCCCC---------cEeeecccccCCCcceeEEe-ccCceeeeccccccccceeccCc
Confidence              99999999999999999999998         555555677764 3333454 3777444443   4778888874

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.86  E-value=5.9e-20  Score=143.86  Aligned_cols=223  Identities=15%  Similarity=0.150  Sum_probs=160.7

Q ss_pred             cEEEEcccc-eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc--cceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN--KIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~-~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +.||+++.. .....+.  -...|+++.|+|..+.+++.|..+|+|.+||++.+...  ..+.         .....|+.
T Consensus       224 ~~vW~~~~p~~Pe~~~~--~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls---------~~~~sh~~  292 (555)
T KOG1587|consen  224 LLVWSLKNPNTPELVLE--SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS---------ALEVSHSE  292 (555)
T ss_pred             EEEEecCCCCCceEEEe--cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc---------cccccCCc
Confidence            678999855 4444454  67899999999999889999999999999999877652  2221         23344788


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec-----c------CCCCCCccceeecccceeEEEeeee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS-----K------STTKPLKGSQSTSKVNIRDAEMEIL  147 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-----~------~~~~~~~~~~~~~~~~~~~~~~~~~  147 (250)
                      .+..+.|...    ..+.-+++++.||.|..|+++.-..+...     .      ......+.+++|.+.....+.+|..
T Consensus       293 ~v~~vvW~~~----~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe  368 (555)
T KOG1587|consen  293 PVTAVVWLQN----EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTE  368 (555)
T ss_pred             CeEEEEEecc----CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcC
Confidence            8999988761    23466999999999999998864332111     1      1223567788888765544445544


Q ss_pred             eeccC------------eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee
Q 025649          148 DQSGG------------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN  215 (250)
Q Consensus       148 ~~~~~------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  215 (250)
                      .+...            ...+....+..|.+.|+++.++||.+  .++++++ |.+++||......        .++..+
T Consensus       369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~--k~fls~g-DW~vriWs~~~~~--------~Pl~~~  437 (555)
T KOG1587|consen  369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP--KNFLSVG-DWTVRIWSEDVIA--------SPLLSL  437 (555)
T ss_pred             CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc--ceeeeec-cceeEeccccCCC--------Ccchhh
Confidence            44321            11123446667899999999998765  4566666 9999999887321        455566


Q ss_pred             eccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          216 INLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       216 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ..+...+++++|+|.....|+++..||.|.+||+.
T Consensus       438 ~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  438 DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             hhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            67777899999999888899999999999999973

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.5e-19  Score=126.13  Aligned_cols=216  Identities=10%  Similarity=0.135  Sum_probs=147.6

Q ss_pred             eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649           14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK   93 (250)
Q Consensus        14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (250)
                      ..|..+|.+-|+++.|.+.|+ .+++|+.|++|+|||.++...-....         .....|...|..+.|.+    +.
T Consensus         6 ~pi~s~h~DlihdVs~D~~GR-RmAtCSsDq~vkI~d~~~~s~~W~~T---------s~Wrah~~Si~rV~WAh----PE   71 (361)
T KOG2445|consen    6 APIDSGHKDLIHDVSFDFYGR-RMATCSSDQTVKIWDSTSDSGTWSCT---------SSWRAHDGSIWRVVWAH----PE   71 (361)
T ss_pred             cccccCCcceeeeeeecccCc-eeeeccCCCcEEEEeccCCCCceEEe---------eeEEecCCcEEEEEecC----cc
Confidence            455558999999999999999 89999999999999976544322221         11223578899999976    24


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCce-------eE-eeccCCCCCCccceeeccc--ceeEEEeeeeeecc----------Ce
Q 025649           94 TNKICVVAKGDGVVDVINIESEL-------NI-SRSKSTTKPLKGSQSTSKV--NIRDAEMEILDQSG----------GK  153 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~-------~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----------~~  153 (250)
                      -|+.+|+++.|+++.||.-....       -. ..........+..+.|.|.  |-.+++ ...|+..          ..
T Consensus        72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-~~aDG~lRIYEA~dp~nLs  150 (361)
T KOG2445|consen   72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-ASADGILRIYEAPDPMNLS  150 (361)
T ss_pred             ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-eccCcEEEEEecCCccccc
Confidence            59999999999999999763211       11 1122233478899999996  455553 2222221          11


Q ss_pred             eeeeecccc-------CccccEEEEEeecCCCCCcEEEEeeCC-----CeEEEEecCCCcceecccccceeeeeeccCCc
Q 025649          154 RLHLDYSVG-------GHTAAASCVAFSMFGERGKYLISGGND-----KLVKVWDCSRFQGVQTSINNDLLIKNINLNKK  221 (250)
Q Consensus       154 ~~~~~~~~~-------~h~~~v~~~~~~p~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  221 (250)
                      .-.+..+++       .+.....|+.|+|-.-..++|+.|+.+     +.++||........-     ..+..+.+|+.+
T Consensus       151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw-----~kva~L~d~~dp  225 (361)
T KOG2445|consen  151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW-----LKVAELPDHTDP  225 (361)
T ss_pred             cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee-----eeehhcCCCCCc
Confidence            111222332       466788999999533345688888866     489999877653211     233455699999


Q ss_pred             eeEEEecCCCCC---eEEEeeCCceEEEEeCC
Q 025649          222 VNWLCTTPTESE---NLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       222 v~~~~~~~~~~~---~l~s~~~d~~i~vw~~~  250 (250)
                      |+.++|.|.-|+   .||+++.|| |+||++.
T Consensus       226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~  256 (361)
T KOG2445|consen  226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVK  256 (361)
T ss_pred             ceeeeeccccCCceeeEEEeecCc-EEEEEEe
Confidence            999999996554   589999999 9999863

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.86  E-value=1.4e-19  Score=126.53  Aligned_cols=221  Identities=16%  Similarity=0.194  Sum_probs=154.7

Q ss_pred             cEEEEccc--ce--eeeeec----cCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649            2 WQIIDIRQ--HC--LYKSLR----AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         2 i~iwd~~~--~~--~~~~l~----~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~   73 (250)
                      +|||.+..  .+  +...|.    ..+..++++..|+.-.+.+|.++|-|-+..|||++++.. ..+         .+.+
T Consensus       123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-~~v---------kTQL  192 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-GTV---------KTQL  192 (364)
T ss_pred             EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-cce---------eeEE
Confidence            68998763  22  222222    145679999999988877999999999999999998732 111         1233


Q ss_pred             ccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeecc-CC-CCCCccceeeccc-ceeEEEee-----
Q 025649           74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK-ST-TKPLKGSQSTSKV-NIRDAEME-----  145 (250)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~-~~~~~~~~~~~~~-~~~~~~~~-----  145 (250)
                      ..|.+.|+.++|..     ..-+.+++.+.||.+|+||++.......+. .+ .......++++++ -+++++..     
T Consensus       193 IAHDKEV~DIaf~~-----~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~  267 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLK-----GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNK  267 (364)
T ss_pred             EecCcceeEEEecc-----CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCce
Confidence            44889999999996     345688999999999999999854332222 22 2467778888875 45555421     


Q ss_pred             --eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee
Q 025649          146 --ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN  223 (250)
Q Consensus       146 --~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (250)
                        ..|.  +....++.++++|.+.|+.++|.|  .....++|++.|..+.+||+........   ..++.. ..-++.|+
T Consensus       268 V~iLDi--R~P~tpva~L~~H~a~VNgIaWaP--hS~~hictaGDD~qaliWDl~q~~~~~~---~dPila-y~a~~EVN  339 (364)
T KOG0290|consen  268 VVILDI--RVPCTPVARLRNHQASVNGIAWAP--HSSSHICTAGDDCQALIWDLQQMPRENG---EDPILA-YTAGGEVN  339 (364)
T ss_pred             EEEEEe--cCCCcceehhhcCcccccceEecC--CCCceeeecCCcceEEEEecccccccCC---CCchhh-hhccceee
Confidence              2222  234456788999999999999997  4567999999999999999987533100   012112 23567899


Q ss_pred             EEEecCCCCCeEEEeeCCceEEE
Q 025649          224 WLCTTPTESENLVVCDTSKVVKV  246 (250)
Q Consensus       224 ~~~~~~~~~~~l~s~~~d~~i~v  246 (250)
                      .+.|+|..+..|+.+. ++++.+
T Consensus       340 qi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  340 QIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             eeeecccCCCEEEEEe-cCeeeE
Confidence            9999988888888876 444544

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.2e-19  Score=132.65  Aligned_cols=195  Identities=16%  Similarity=0.154  Sum_probs=147.4

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC--CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC-E
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK--GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-I   97 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~   97 (250)
                      .+.|+++.|+|..+ +|++|+.|++++||.+..  ...+..+.+.             .-+|.+..|.|      +|. .
T Consensus       213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~~l~-------------~fPi~~a~f~p------~G~~~  272 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSIHLE-------------KFPIQKAEFAP------NGHSV  272 (514)
T ss_pred             cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhheeeeec-------------cCccceeeecC------CCceE
Confidence            46899999999999 999999999999999852  3344555443             56788999998      888 8


Q ss_pred             EEEEeCCCeEEEEeCCCceeEee--ccCCCCCCccceeecccceeEEEeee---eeeccCeeeeeeccccCccccEEEEE
Q 025649           98 CVVAKGDGVVDVINIESELNISR--SKSTTKPLKGSQSTSKVNIRDAEMEI---LDQSGGKRLHLDYSVGGHTAAASCVA  172 (250)
Q Consensus        98 l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~~~  172 (250)
                      +++++....++.||+.+.+....  ........+.....++++++++..|.   .......+.+.+..++ -.+.|..+.
T Consensus       273 i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~  351 (514)
T KOG2055|consen  273 IFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFT  351 (514)
T ss_pred             EEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEE
Confidence            99999999999999998765433  23333457788899999999985332   2222234444555554 356789999


Q ss_pred             eecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC-ceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          173 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       173 ~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      |+   .+++.|+..+.+|.|.+||++..         .++..+....+ .-++++.++ ++++||+|+..|.|.|||.
T Consensus       352 fs---Sdsk~l~~~~~~GeV~v~nl~~~---------~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~  416 (514)
T KOG2055|consen  352 FS---SDSKELLASGGTGEVYVWNLRQN---------SCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDG  416 (514)
T ss_pred             Ee---cCCcEEEEEcCCceEEEEecCCc---------ceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEecc
Confidence            99   89999999999999999999997         34444433322 234566665 8999999999999999985

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.86  E-value=3.3e-20  Score=127.94  Aligned_cols=230  Identities=13%  Similarity=0.097  Sum_probs=147.7

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc--------------ceecC-CCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK--------------IVNFG-LPE   66 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~--------------~~~~~-~~~   66 (250)
                      |.+|++.+.+.+..++..|...|+.+..-|++  .|.+-+.|+.+.+|++.-+..+.              .+..+ .+.
T Consensus        37 V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~  114 (323)
T KOG0322|consen   37 VKMWVLQTERDLPLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNS  114 (323)
T ss_pred             EEEEEeecCccchhhhhhccceeeceeecCCc--chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcc
Confidence            78999999998888874467899999999986  48999999999999987532111              11000 000


Q ss_pred             --------CCCCC---Cccc--------------CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec
Q 025649           67 --------NNGNA---GQCY--------------NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS  121 (250)
Q Consensus        67 --------~~~~~---~~~~--------------~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  121 (250)
                              .....   ..+.              ..+.+.+..+.-   -....-++++|.++|.+.+||+.++.....+
T Consensus       115 eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~---~c~s~~lllaGyEsghvv~wd~S~~~~~~~~  191 (323)
T KOG0322|consen  115 EQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH---ACGSTFLLLAGYESGHVVIWDLSTGDKIIQL  191 (323)
T ss_pred             hhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc---cccceEEEEEeccCCeEEEEEccCCceeecc
Confidence                    00000   0000              001122222111   0012235688889999999999987444333


Q ss_pred             cC---------CCCCCccceeecccceeEEEeee------eeec-cCeeeeeeccccCccccEEEEEeecCCCCCcEEEE
Q 025649          122 KS---------TTKPLKGSQSTSKVNIRDAEMEI------LDQS-GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS  185 (250)
Q Consensus       122 ~~---------~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s  185 (250)
                      +.         .+..++.++.+.+.-..=+.-+.      +... .....+....+.-....|..+..-   ||++.+||
T Consensus       192 ~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIR---pD~KIlAT  268 (323)
T KOG0322|consen  192 PQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIR---PDGKILAT  268 (323)
T ss_pred             ccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEc---cCCcEEee
Confidence            22         23466777777653222111000      1110 011111112222233457888888   89999999


Q ss_pred             eeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          186 GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       186 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ++.|++||||..++.         .++..+..|...|++++|+| +..++|+++.|+.|.+|++
T Consensus       269 AGWD~RiRVyswrtl---------~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  269 AGWDHRIRVYSWRTL---------NPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL  322 (323)
T ss_pred             cccCCcEEEEEeccC---------CchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence            999999999999998         77788899999999999998 7789999999999999986

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=3.3e-19  Score=137.27  Aligned_cols=201  Identities=12%  Similarity=0.119  Sum_probs=151.8

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc-ceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK-IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      -...|.+|+|+.+.. .||.+-.||.|-+|+++.+-... .+..+            ....|.+++|++       +..|
T Consensus        24 ~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~~vi~g~------------~drsIE~L~W~e-------~~RL   83 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLEPVIHGP------------EDRSIESLAWAE-------GGRL   83 (691)
T ss_pred             eccceEEEEEeccCC-ceeeeccCCcEEEEccCCCceeeEEEecC------------CCCceeeEEEcc-------CCeE
Confidence            457899999999998 79999999999999998764333 33322            356899999995       7788


Q ss_pred             EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc------CeeeeeeccccCccccEEEEE
Q 025649           99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG------GKRLHLDYSVGGHTAAASCVA  172 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~h~~~v~~~~  172 (250)
                      ++.+.+|.|.-||+.+++........ ...+++++.+|.+..++ +|+.++..      ....+....+...++.|.+++
T Consensus        84 FS~g~sg~i~EwDl~~lk~~~~~d~~-gg~IWsiai~p~~~~l~-IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls  161 (691)
T KOG2048|consen   84 FSSGLSGSITEWDLHTLKQKYNIDSN-GGAIWSIAINPENTILA-IGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS  161 (691)
T ss_pred             EeecCCceEEEEecccCceeEEecCC-CcceeEEEeCCccceEE-eecCCceEEEEecCCceEEEEeecccccceEEEEE
Confidence            88899999999999998887766554 48899999999998888 77555531      123333445555678999999


Q ss_pred             eecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeec-cCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          173 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       173 ~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      |+   |++..+++|+.||.|++||..++..... ...+. ..... -.--|+++.+-. ++ .|++|..-|+|++||-
T Consensus       162 w~---~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~-~~~~~-d~l~k~~~~iVWSv~~Lr-d~-tI~sgDS~G~V~FWd~  232 (691)
T KOG2048|consen  162 WN---PTGTKIAGGSIDGVIRIWDVKSGQTLHI-ITMQL-DRLSKREPTIVWSVLFLR-DS-TIASGDSAGTVTFWDS  232 (691)
T ss_pred             ec---CCccEEEecccCceEEEEEcCCCceEEE-eeecc-cccccCCceEEEEEEEee-cC-cEEEecCCceEEEEcc
Confidence            99   8999999999999999999999865431 00001 11111 222378888774 55 6999999999999984

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=8.6e-19  Score=135.00  Aligned_cols=212  Identities=18%  Similarity=0.208  Sum_probs=164.8

Q ss_pred             CcEEEEcccce-eeeeeccCC-CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHC-LYKSLRAGH-SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~-~~~~l~~~h-~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|.||++..+= +...+. ++ ...|.+++|++.++  |.+.+.+|.|.-||+.+++.+..+...             ..
T Consensus        48 ~IEiwN~~~~w~~~~vi~-g~~drsIE~L~W~e~~R--LFS~g~sg~i~EwDl~~lk~~~~~d~~-------------gg  111 (691)
T KOG2048|consen   48 NIEIWNLSNNWFLEPVIH-GPEDRSIESLAWAEGGR--LFSSGLSGSITEWDLHTLKQKYNIDSN-------------GG  111 (691)
T ss_pred             cEEEEccCCCceeeEEEe-cCCCCceeeEEEccCCe--EEeecCCceEEEEecccCceeEEecCC-------------Cc
Confidence            47899998654 445566 65 46899999997764  889999999999999999988877633             57


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC-CCCCCccceeecccceeEEEeeeee-------ec
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNIRDAEMEILD-------QS  150 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  150 (250)
                      .|++++.+|      .+..++.|+.||.+..++...+........ ..+..+.+++|+|++..++ .|+.|       ..
T Consensus       112 ~IWsiai~p------~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~-~Gs~Dg~Iriwd~~  184 (691)
T KOG2048|consen  112 AIWSIAINP------ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA-GGSIDGVIRIWDVK  184 (691)
T ss_pred             ceeEEEeCC------ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE-ecccCceEEEEEcC
Confidence            899999999      899999999999888888888777654433 3348999999999999887 44433       33


Q ss_pred             cCeeeee----ecccc-CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649          151 GGKRLHL----DYSVG-GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL  225 (250)
Q Consensus       151 ~~~~~~~----~~~~~-~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (250)
                      .......    +..+. +...-|+++.|-   .+ ..+++|..-|+|.+||...+         .++..+..|...|.++
T Consensus       185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~L---rd-~tI~sgDS~G~V~FWd~~~g---------TLiqS~~~h~adVl~L  251 (691)
T KOG2048|consen  185 SGQTLHIITMQLDRLSKREPTIVWSVLFL---RD-STIASGDSAGTVTFWDSIFG---------TLIQSHSCHDADVLAL  251 (691)
T ss_pred             CCceEEEeeecccccccCCceEEEEEEEe---ec-CcEEEecCCceEEEEcccCc---------chhhhhhhhhcceeEE
Confidence            3333321    11111 133457888887   44 57999999999999999998         6777888999999999


Q ss_pred             EecCCCCCeEEEeeCCceEEEEeC
Q 025649          226 CTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       226 ~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +..+ ++..+++++.|+.|..|..
T Consensus       252 av~~-~~d~vfsaGvd~~ii~~~~  274 (691)
T KOG2048|consen  252 AVAD-NEDRVFSAGVDPKIIQYSL  274 (691)
T ss_pred             EEcC-CCCeEEEccCCCceEEEEe
Confidence            9987 7788999999999887753

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=3.2e-20  Score=141.98  Aligned_cols=209  Identities=14%  Similarity=0.097  Sum_probs=134.5

Q ss_pred             cEEEEccccee------eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccc-eecCCCCCCCCCCcc
Q 025649            2 WQIIDIRQHCL------YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI-VNFGLPENNGNAGQC   74 (250)
Q Consensus         2 i~iwd~~~~~~------~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~   74 (250)
                      |.++|.+....      ++... .|.+.|.++.|-| |+..|++++.|.++++||+++++.... +.++           
T Consensus        76 i~l~dt~~~~fr~ee~~lk~~~-aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G-----------  142 (720)
T KOG0321|consen   76 IILFDTKSIVFRLEERQLKKPL-AHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLG-----------  142 (720)
T ss_pred             eeeecchhhhcchhhhhhcccc-cccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecc-----------
Confidence            45666553222      24445 8999999999999 555899999999999999998877654 3334           


Q ss_pred             cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee---cc
Q 025649           75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ---SG  151 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  151 (250)
                       |...|.+++|.|     .+...+++|+.||.|.|||++...........  ..+              .+....   -.
T Consensus       143 -H~~SvkS~cf~~-----~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~--~~~--------------~~~~n~~ptps  200 (720)
T KOG0321|consen  143 -HTGSVKSECFMP-----TNPAVFCTGGRDGEILLWDCRCNGVDALEEFD--NRI--------------YGRHNTAPTPS  200 (720)
T ss_pred             -cccccchhhhcc-----CCCcceeeccCCCcEEEEEEeccchhhHHHHh--hhh--------------hccccCCCCCC
Confidence             788999999998     67889999999999999999864311100000  000              000000   00


Q ss_pred             CeeeeeeccccCccccEEE---EEeecCCCCCcEEEEeeC-CCeEEEEecCCCcceecccccceeeeeecc---CCceeE
Q 025649          152 GKRLHLDYSVGGHTAAASC---VAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNINL---NKKVNW  224 (250)
Q Consensus       152 ~~~~~~~~~~~~h~~~v~~---~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~v~~  224 (250)
                      ....+.+..-.++...|.+   +.+.   .|...||+++. |+.|+|||++............ ...+..|   .-.+.+
T Consensus       201 kp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~-~~~~~t~skrs~G~~n  276 (720)
T KOG0321|consen  201 KPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG-SDKYPTHSKRSVGQVN  276 (720)
T ss_pred             chhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCc-ccCccCcccceeeeEE
Confidence            1111122333445554444   4444   58889999887 9999999999875543221111 1122233   224666


Q ss_pred             EEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          225 LCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       225 ~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ++... .|.+|++.+.|+.|++||+.
T Consensus       277 L~lDs-sGt~L~AsCtD~sIy~ynm~  301 (720)
T KOG0321|consen  277 LILDS-SGTYLFASCTDNSIYFYNMR  301 (720)
T ss_pred             EEecC-CCCeEEEEecCCcEEEEecc
Confidence            66654 56777777779999999974

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.85  E-value=1.6e-19  Score=140.39  Aligned_cols=201  Identities=11%  Similarity=0.059  Sum_probs=152.7

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  100 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  100 (250)
                      ...+.+++.+|+|+ +|++|..-|++++|++.+.+....+..             |...|.|+.++--..   ..++|++
T Consensus       459 r~G~R~~~vSp~gq-hLAsGDr~GnlrVy~Lq~l~~~~~~eA-------------HesEilcLeyS~p~~---~~kLLAS  521 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQ-HLASGDRGGNLRVYDLQELEYTCFMEA-------------HESEILCLEYSFPVL---TNKLLAS  521 (1080)
T ss_pred             ccceEEEEECCCcc-eecccCccCceEEEEehhhhhhhheec-------------ccceeEEEeecCchh---hhHhhhh
Confidence            45789999999999 899999999999999998877766663             578999999985111   3578999


Q ss_pred             EeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccc--eeEEEeeeeeeccCe-e--------eeeeccccCccccEE
Q 025649          101 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN--IRDAEMEILDQSGGK-R--------LHLDYSVGGHTAAAS  169 (250)
Q Consensus       101 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~--------~~~~~~~~~h~~~v~  169 (250)
                      ++.|..|++||+.....+......+...|+++.|--.|  ..+++ +..|..... .        .....+-...+..++
T Consensus       522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis-cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY  600 (1080)
T KOG1408|consen  522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS-CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY  600 (1080)
T ss_pred             ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe-ccCchhhheehhccccCceeccccccccccceEE
Confidence            99999999999987666555444556889999998877  55553 333332210 0        000111111235688


Q ss_pred             EEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          170 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       170 ~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .++..   |+.+++++++.|+.|+|||+.+++..      +..+...+|.+....+...| .|-|+++.+.|.++.++|+
T Consensus       601 Dm~Vd---p~~k~v~t~cQDrnirif~i~sgKq~------k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df  670 (1080)
T KOG1408|consen  601 DMAVD---PTSKLVVTVCQDRNIRIFDIESGKQV------KSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDF  670 (1080)
T ss_pred             EeeeC---CCcceEEEEecccceEEEecccccee------eeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEe
Confidence            99999   88899999999999999999999654      34444556777787888887 8999999999999999996

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=3.9e-19  Score=125.49  Aligned_cols=195  Identities=13%  Similarity=0.184  Sum_probs=145.9

Q ss_pred             eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649           13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD   92 (250)
Q Consensus        13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   92 (250)
                      +..+. .|.++|++++.+  ++ ++++||.|-+|+|||+++...+..+..             |.+.|+++.|.+    +
T Consensus        36 lF~~~-aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~qlg~ll~-------------HagsitaL~F~~----~   94 (362)
T KOG0294|consen   36 LFAFS-AHAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQLGILLS-------------HAGSITALKFYP----P   94 (362)
T ss_pred             ccccc-ccccceeEEEec--ce-eEeccCCCCcEEEEeccchhhhcceec-------------cccceEEEEecC----C
Confidence            45667 999999999986  55 899999999999999998877766652             578999999997    2


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee------eeeeccCeeeeeeccccCccc
Q 025649           93 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSGGKRLHLDYSVGGHTA  166 (250)
Q Consensus        93 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~h~~  166 (250)
                      .....|++|+.||.|.+|+.........++.+.. .++.++++|.|++.++++      .|+...++...+ ..+.   .
T Consensus        95 ~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v-~~L~---~  169 (362)
T KOG0294|consen   95 LSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV-LNLK---N  169 (362)
T ss_pred             cchhheeeecCCCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCceEEEEcCCceeeeehhhcCcccee-eccC---C
Confidence            2334899999999999999999988888887764 499999999999988644      334333332221 1121   2


Q ss_pred             cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEE
Q 025649          167 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV  246 (250)
Q Consensus       167 ~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~v  246 (250)
                      ..+.+.|+   |.|.+++.++.+ .|-+|.+.+..         ++ ........+.++.|-  ++..+++|+.|+.|++
T Consensus       170 ~at~v~w~---~~Gd~F~v~~~~-~i~i~q~d~A~---------v~-~~i~~~~r~l~~~~l--~~~~L~vG~d~~~i~~  233 (362)
T KOG0294|consen  170 KATLVSWS---PQGDHFVVSGRN-KIDIYQLDNAS---------VF-REIENPKRILCATFL--DGSELLVGGDNEWISL  233 (362)
T ss_pred             cceeeEEc---CCCCEEEEEecc-EEEEEecccHh---------Hh-hhhhccccceeeeec--CCceEEEecCCceEEE
Confidence            23459999   889988877754 79999988852         21 222222456666554  7778999999999999


Q ss_pred             EeC
Q 025649          247 YSI  249 (250)
Q Consensus       247 w~~  249 (250)
                      ||-
T Consensus       234 ~D~  236 (362)
T KOG0294|consen  234 KDT  236 (362)
T ss_pred             ecc
Confidence            984

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.6e-20  Score=152.04  Aligned_cols=206  Identities=9%  Similarity=0.090  Sum_probs=153.9

Q ss_pred             CCCCeeeEEEcCCCCe---EEEEecCCCeEEEEEccC---CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649           20 HSSICSSVQFIPWKPW---EVISGGLDSKLVMWDFSK---GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK   93 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~---~l~s~s~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (250)
                      -....+.|+|.+.+..   +|+.|..||.|.+||...   +.....+.          ....|.+.|..+.|++     .
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la----------~~~~h~G~V~gLDfN~-----~  127 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLA----------TKSKHTGPVLGLDFNP-----F  127 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHh----------hhcccCCceeeeeccc-----c
Confidence            4567889999998873   599999999999999865   22211111          1223788999999999     4


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeEeec-cCCCCCCccceeecccceeEEEeee----eeeccCeeeeeeccccCccc--
Q 025649           94 TNKICVVAKGDGVVDVINIESELNISRS-KSTTKPLKGSQSTSKVNIRDAEMEI----LDQSGGKRLHLDYSVGGHTA--  166 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~h~~--  166 (250)
                      .+++||+|+.||.|.|||+..-+..... .......|.+++|+..-..++..+.    ..+|+.+..+.+..+..+.+  
T Consensus       128 q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~  207 (1049)
T KOG0307|consen  128 QGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM  207 (1049)
T ss_pred             CCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc
Confidence            6779999999999999999986655544 3334578999999988776664333    23344444455555555443  


Q ss_pred             cEEEEEeecCCCCCcEEEEeeCCC---eEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCce
Q 025649          167 AASCVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV  243 (250)
Q Consensus       167 ~v~~~~~~p~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  243 (250)
                      .+..++|+|  .+...+++++.|.   .|.+||+|...        ..++.+.+|...|.++.|++.|..++++++.|+.
T Consensus       208 ~~S~l~WhP--~~aTql~~As~dd~~PviqlWDlR~as--------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~  277 (1049)
T KOG0307|consen  208 HCSVLAWHP--DHATQLLVASGDDSAPVIQLWDLRFAS--------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR  277 (1049)
T ss_pred             ceeeeeeCC--CCceeeeeecCCCCCceeEeecccccC--------CchhhhcccccceeeeccCCCCchhhhcccCCCC
Confidence            578899995  3456677776554   79999999864        4556678999999999999999899999999999


Q ss_pred             EEEEeCC
Q 025649          244 VKVYSIS  250 (250)
Q Consensus       244 i~vw~~~  250 (250)
                      |.+|+.+
T Consensus       278 ii~wN~~  284 (1049)
T KOG0307|consen  278 IICWNPN  284 (1049)
T ss_pred             eeEecCC
Confidence            9999863

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=5e-20  Score=139.03  Aligned_cols=223  Identities=11%  Similarity=0.117  Sum_probs=153.5

Q ss_pred             CcEEEEcc--------cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC-ccceecCCCCCCCCC
Q 025649            1 MWQIIDIR--------QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNA   71 (250)
Q Consensus         1 ti~iwd~~--------~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~   71 (250)
                      +|++|+++        .-+.+.+|+ +|.++|.|+++.+++. .+++|+-||+|+.|++....- -....    ...-..
T Consensus       317 ~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~d----p~vl~~  390 (577)
T KOG0642|consen  317 TLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGE-HCYSGGIDGTIRCWNLPPNQDPDDSYD----PSVLSG  390 (577)
T ss_pred             chhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCce-EEEeeccCceeeeeccCCCCCcccccC----cchhcc
Confidence            47889983        235678899 9999999999999999 899999999999998752211 00000    001113


Q ss_pred             CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC-CCCCccceeecccc-eeEEE---eee
Q 025649           72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-TKPLKGSQSTSKVN-IRDAE---MEI  146 (250)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~---~~~  146 (250)
                      .++.|.+.++.+++++      ....|++++.||+++.|+...... ..+... ......++.+...- ...++   .+.
T Consensus       391 ~l~Ghtdavw~l~~s~------~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~  463 (577)
T KOG0642|consen  391 TLLGHTDAVWLLALSS------TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGY  463 (577)
T ss_pred             ceeccccceeeeeecc------cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhccccc
Confidence            4556899999999998      788899999999999999887655 222211 11223333332221 11110   111


Q ss_pred             eeeccCeeeeeecccc-------CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC
Q 025649          147 LDQSGGKRLHLDYSVG-------GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN  219 (250)
Q Consensus       147 ~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  219 (250)
                      ...........+..+.       .-...+.-+...   |++.+.+++..|+.|+++|..++         .++.....|.
T Consensus       464 ~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~---~~~~~~~~~hed~~Ir~~dn~~~---------~~l~s~~a~~  531 (577)
T KOG0642|consen  464 TSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH---PTADITFTAHEDRSIRFFDNKTG---------KILHSMVAHK  531 (577)
T ss_pred             ccchhhhhhhheeeccccCCCcccccCccceEEec---CCCCeeEecccCCceeccccccc---------ccchheeecc
Confidence            1111111111111111       112346677778   78899999999999999999998         7888889999


Q ss_pred             CceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          220 KKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       220 ~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ..++++++.| +|-+|++++.||.+++|.+
T Consensus       532 ~svtslai~~-ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  532 DSVTSLAIDP-NGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             ceecceeecC-CCceEEeecCCceeehhhc
Confidence            9999999998 7889999999999999976

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=8.2e-20  Score=134.13  Aligned_cols=209  Identities=12%  Similarity=0.082  Sum_probs=150.6

Q ss_pred             eeEEEcCCC------CeEEEEecCCCeEEEEEccCC-CCccceecCCCC-------CCCCCCcccCCCceeEEecCCCcc
Q 025649           25 SSVQFIPWK------PWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPE-------NNGNAGQCYNPAFVHAIAIPDADM   90 (250)
Q Consensus        25 ~~l~~~~~~------~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~   90 (250)
                      .|++|...+      .+++|.|..|..|.|||+.-- .....+.++...       .........|.+.|.+++|+.   
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~---  253 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR---  253 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc---
Confidence            466665331      139999999999999998632 222222222100       001122334777888888886   


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCe-ee----eeeccccCcc
Q 025649           91 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK-RL----HLDYSVGGHT  165 (250)
Q Consensus        91 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~h~  165 (250)
                        ...+.||+|+.|.+|.+||+.++++...+.. +...|.++.|+|....++..|+.|.+..- ..    ..-..++ -.
T Consensus       254 --~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~  329 (463)
T KOG0270|consen  254 --NFRNVLASGSADKTVKLWDVDTGKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FD  329 (463)
T ss_pred             --ccceeEEecCCCceEEEEEcCCCCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-ec
Confidence              3567999999999999999999998888774 45899999999987666556766655321 00    0011111 24


Q ss_pred             ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649          166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK  245 (250)
Q Consensus       166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  245 (250)
                      +.|..++|.|++  -..++++..||+|+-+|+|...        +++.....|.++|.++++++....+++|++.|+.++
T Consensus       330 g~VEkv~w~~~s--e~~f~~~tddG~v~~~D~R~~~--------~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk  399 (463)
T KOG0270|consen  330 GEVEKVAWDPHS--ENSFFVSTDDGTVYYFDIRNPG--------KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK  399 (463)
T ss_pred             cceEEEEecCCC--ceeEEEecCCceEEeeecCCCC--------CceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence            678999999643  3578888899999999999964        677788999999999999987788999999999999


Q ss_pred             EEeCC
Q 025649          246 VYSIS  250 (250)
Q Consensus       246 vw~~~  250 (250)
                      +|++.
T Consensus       400 lw~~~  404 (463)
T KOG0270|consen  400 LWKFD  404 (463)
T ss_pred             EEeec
Confidence            99873

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=9.5e-21  Score=142.91  Aligned_cols=186  Identities=16%  Similarity=0.222  Sum_probs=143.7

Q ss_pred             eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649           13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD   92 (250)
Q Consensus        13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   92 (250)
                      .+.|. ||++.|++++|+.+|. +|++||+|-.+.|||....+.+..+..+            |...|.++.|-|    .
T Consensus        43 E~eL~-GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~Tg------------HtaNIFsvKFvP----~  104 (758)
T KOG1310|consen   43 EAELT-GHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTG------------HTANIFSVKFVP----Y  104 (758)
T ss_pred             hhhhc-cccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecc------------cccceeEEeeec----c
Confidence            45678 9999999999999999 8999999999999999988999999888            899999999998    3


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEE
Q 025649           93 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA  172 (250)
Q Consensus        93 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  172 (250)
                      .+++++++|+.|..|+++|+...+.-.                              .+.......+-+..|...|..++
T Consensus       105 tnnriv~sgAgDk~i~lfdl~~~~~~~------------------------------~d~~~~~~~~~~~cht~rVKria  154 (758)
T KOG1310|consen  105 TNNRIVLSGAGDKLIKLFDLDSSKEGG------------------------------MDHGMEETTRCWSCHTDRVKRIA  154 (758)
T ss_pred             CCCeEEEeccCcceEEEEecccccccc------------------------------cccCccchhhhhhhhhhhhhhee
Confidence            467789999999999999998533111                              11111223456778999999999


Q ss_pred             eecCCCCC-cEEEEeeCCCeEEEEecCCCcce-ecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          173 FSMFGERG-KYLISGGNDKLVKVWDCSRFQGV-QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       173 ~~p~~~~~-~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      -.   |++ +.+.++++||+|+-+|++....- +....+..+......--...++..+|.+..+|++|+.|-..++||.
T Consensus       155 ~~---p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  155 TA---PNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             cC---CCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            98   566 78899999999999999974321 1110111111122222356788899999999999999999999984

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.9e-19  Score=131.96  Aligned_cols=213  Identities=13%  Similarity=0.088  Sum_probs=167.9

Q ss_pred             cEEEEcccceeee--eeccCCC-CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLYK--SLRAGHS-SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~~--~l~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      .+.||+++.+..+  .+. ++. ..+.....+|+++ +|+..+..|.|.+-...+++.+..++..              +
T Consensus       282 ~ysyDle~ak~~k~~~~~-g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~Kie--------------G  345 (514)
T KOG2055|consen  282 LYSYDLETAKVTKLKPPY-GVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIE--------------G  345 (514)
T ss_pred             EEEeeccccccccccCCC-CcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeec--------------c
Confidence            4689999887643  344 554 3577888999999 8999999999999999999999999844              7


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeecc----
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSG----  151 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----  151 (250)
                      .|..+.|+.      +++.|++++.+|.|.+||++...++.++.......-.+++.+++|.++++   .|..++.+    
T Consensus       346 ~v~~~~fsS------dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~  419 (514)
T KOG2055|consen  346 VVSDFTFSS------DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC  419 (514)
T ss_pred             EEeeEEEec------CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence            899999998      99999999999999999999998888777664455567788899999985   33333333    


Q ss_pred             --CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeC--CCeEEEEecCCCcceecccccceeeeee---ccCCceeE
Q 025649          152 --GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN--DKLVKVWDCSRFQGVQTSINNDLLIKNI---NLNKKVNW  224 (250)
Q Consensus       152 --~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~v~~  224 (250)
                        ....+++..+..-...|++++|+   +++++|+.+|.  +..+++-.+.+..         ....+.   ..-+.|++
T Consensus       420 ~~s~~PkPik~~dNLtt~Itsl~Fn---~d~qiLAiaS~~~knalrLVHvPS~T---------VFsNfP~~n~~vg~vtc  487 (514)
T KOG2055|consen  420 FASTNPKPIKTVDNLTTAITSLQFN---HDAQILAIASRVKKNALRLVHVPSCT---------VFSNFPTSNTKVGHVTC  487 (514)
T ss_pred             hccCCCCchhhhhhhheeeeeeeeC---cchhhhhhhhhccccceEEEecccee---------eeccCCCCCCcccceEE
Confidence              23445666676667789999999   89999988875  6789999888752         222222   12235999


Q ss_pred             EEecCCCCCeEEEeeCCceEEEEeC
Q 025649          225 LCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       225 ~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      |+|+| .+.+|+.|..+|.+.+|.+
T Consensus       488 ~aFSP-~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  488 MAFSP-NSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             EEecC-CCceEEeecCCCceeeEee
Confidence            99998 6779999999999999986

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.84  E-value=1e-19  Score=136.07  Aligned_cols=211  Identities=18%  Similarity=0.212  Sum_probs=162.0

Q ss_pred             cEEEEcccc---eeeeeecc-CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649            2 WQIIDIRQH---CLYKSLRA-GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         2 i~iwd~~~~---~~~~~l~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      |+|||+...   ..+..|.. ...+-|.++..+|||+ .|++|+.-.+|.|||+.........++.           ...
T Consensus       442 VKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeastlsiWDLAapTprikaelt-----------ssa  509 (705)
T KOG0639|consen  442 VKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDLAAPTPRIKAELT-----------SSA  509 (705)
T ss_pred             EEEeeccCCCCCCccccccccCcccceeeeEecCCCc-eEEeccccceeeeeeccCCCcchhhhcC-----------Ccc
Confidence            799999632   23333431 2456799999999999 7999999999999999765432222211           012


Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeecc
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSG  151 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  151 (250)
                      ...++++++|      |.+..++++.||.|.|||+.+...+..++.+. ..+.|+.+++||..|-+      +.+||.+.
T Consensus       510 paCyALa~sp------DakvcFsccsdGnI~vwDLhnq~~VrqfqGht-DGascIdis~dGtklWTGGlDntvRcWDlre  582 (705)
T KOG0639|consen  510 PACYALAISP------DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT-DGASCIDISKDGTKLWTGGLDNTVRCWDLRE  582 (705)
T ss_pred             hhhhhhhcCC------ccceeeeeccCCcEEEEEcccceeeecccCCC-CCceeEEecCCCceeecCCCccceeehhhhh
Confidence            3568899998      99999999999999999999988888877764 78999999999998874      34444444


Q ss_pred             CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649          152 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE  231 (250)
Q Consensus       152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  231 (250)
                      ....   ... .....|.++.++   |++.+++.|-..+.+-|-.....          ....+..|++-|.++.|.+ -
T Consensus       583 grql---qqh-dF~SQIfSLg~c---P~~dWlavGMens~vevlh~skp----------~kyqlhlheScVLSlKFa~-c  644 (705)
T KOG0639|consen  583 GRQL---QQH-DFSSQIFSLGYC---PTGDWLAVGMENSNVEVLHTSKP----------EKYQLHLHESCVLSLKFAY-C  644 (705)
T ss_pred             hhhh---hhh-hhhhhheecccC---CCccceeeecccCcEEEEecCCc----------cceeecccccEEEEEEecc-c
Confidence            3322   221 235679999999   89999999999999888877764          2345667899999999997 8


Q ss_pred             CCeEEEeeCCceEEEEeC
Q 025649          232 SENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       232 ~~~l~s~~~d~~i~vw~~  249 (250)
                      |+++++.+.|+.+..|..
T Consensus       645 GkwfvStGkDnlLnawrt  662 (705)
T KOG0639|consen  645 GKWFVSTGKDNLLNAWRT  662 (705)
T ss_pred             CceeeecCchhhhhhccC
Confidence            999999999999999975

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=1.1e-19  Score=135.68  Aligned_cols=195  Identities=12%  Similarity=0.087  Sum_probs=153.5

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  102 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  102 (250)
                      .-.|++...... ++++|+..+.|+|||++ .+.++.+..+            |...|+++.++.      ...+||+++
T Consensus        81 ~~~Cv~~~s~S~-y~~sgG~~~~Vkiwdl~-~kl~hr~lkd------------h~stvt~v~YN~------~DeyiAsvs  140 (673)
T KOG4378|consen   81 NAFCVACASQSL-YEISGGQSGCVKIWDLR-AKLIHRFLKD------------HQSTVTYVDYNN------TDEYIASVS  140 (673)
T ss_pred             hHHHHhhhhcce-eeeccCcCceeeehhhH-HHHHhhhccC------------CcceeEEEEecC------CcceeEEec
Confidence            345555555556 89999999999999998 4444444435            689999999998      889999999


Q ss_pred             CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeeeeee-ccccCccccEEEEEeecCC
Q 025649          103 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLHLD-YSVGGHTAAASCVAFSMFG  177 (250)
Q Consensus       103 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~h~~~v~~~~~~p~~  177 (250)
                      ..|.|.+..+.++.....+.......+..+.|+|..+.++.+...+    .|+.....++ .-.+.|..+...|.|+|  
T Consensus       141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsp--  218 (673)
T KOG4378|consen  141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSP--  218 (673)
T ss_pred             cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecC--
Confidence            9999999999998887777777667888999999998887543322    2333333333 34467999999999996  


Q ss_pred             CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          178 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       178 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .+..+|++.+.|..|.+||.+..          ..........+...++|.+ +|.+|+.|...|.|..||++
T Consensus       219 sne~l~vsVG~Dkki~~yD~~s~----------~s~~~l~y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  219 SNEALLVSVGYDKKINIYDIRSQ----------ASTDRLTYSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             CccceEEEecccceEEEeecccc----------cccceeeecCCcceeeecC-CceEEEeecCCceEEEEecc
Confidence            56678999999999999999974          2233445566888999997 99999999999999999985

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=4.3e-19  Score=129.62  Aligned_cols=192  Identities=19%  Similarity=0.160  Sum_probs=141.3

Q ss_pred             eeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC
Q 025649           25 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD  104 (250)
Q Consensus        25 ~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d  104 (250)
                      ..++|+.+|. .|++|+.||++|+|+..+...+.....             |...|.++.|+|      |++.|++-+.|
T Consensus       148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~-------------~~~eV~DL~FS~------dgk~lasig~d  207 (398)
T KOG0771|consen  148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIA-------------HHAEVKDLDFSP------DGKFLASIGAD  207 (398)
T ss_pred             eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhHh-------------hcCccccceeCC------CCcEEEEecCC
Confidence            7899999999 899999999999999877665555442             468899999999      99999999999


Q ss_pred             CeEEEEeCCCceeEeecc-CCCCCCccceeecccc---e-eEEE-------eeeeeeccCee--eeeeccccCccccEEE
Q 025649          105 GVVDVINIESELNISRSK-STTKPLKGSQSTSKVN---I-RDAE-------MEILDQSGGKR--LHLDYSVGGHTAAASC  170 (250)
Q Consensus       105 ~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~-~~~~-------~~~~~~~~~~~--~~~~~~~~~h~~~v~~  170 (250)
                       ..+||+.+++..+.... ...+.....+.|+.|+   . ++++       +..++......  .-..++.......|++
T Consensus       208 -~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSs  286 (398)
T KOG0771|consen  208 -SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISS  286 (398)
T ss_pred             -ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCccee
Confidence             89999999986655544 3333455666777665   2 2221       12222221111  1111222223346999


Q ss_pred             EEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ++.+   ++|++++.|+.||.|.|++..+.+..        ...-..|...|+.+.|+| |.+++++-+.|..+.|..+
T Consensus       287 l~VS---~dGkf~AlGT~dGsVai~~~~~lq~~--------~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  287 LAVS---DDGKFLALGTMDGSVAIYDAKSLQRL--------QYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             EEEc---CCCcEEEEeccCCcEEEEEeceeeee--------EeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEE
Confidence            9999   89999999999999999999997432        223467999999999998 8888999888888777654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.83  E-value=3.6e-19  Score=137.46  Aligned_cols=227  Identities=16%  Similarity=0.207  Sum_probs=153.3

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCC--eEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP--WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|.+||..+-.....++ ||..+|+|+.|-|+.+  .++++|+.|++|++|.++..........+            + .
T Consensus        35 ~Iav~dp~k~~i~t~l~-GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~------------g-~  100 (764)
T KOG1063|consen   35 AIAVADPEKILIVTTLD-GHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQ------------G-H  100 (764)
T ss_pred             eEEEeCcccceeEEecc-CCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeec------------C-c
Confidence            37789988777778888 9999999999998764  26999999999999999855444444433            1 2


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce--eEeeccCCC-CCCccceeecc-cceeEEEeeeeeecc---
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL--NISRSKSTT-KPLKGSQSTSK-VNIRDAEMEILDQSG---  151 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~---  151 (250)
                      ...++++..      ......+.+.|+.+++||.+..+  ....+.... .....|++..| .+.++.+.|..+...   
T Consensus       101 ~~~~~cv~a------~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~  174 (764)
T KOG1063|consen  101 CKECVCVVA------RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLY  174 (764)
T ss_pred             ceeEEEEEe------eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEe
Confidence            334444543      22223333789999999995544  111221111 23456777777 445555444333221   


Q ss_pred             ---CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee---------cccc---ccee----
Q 025649          152 ---GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ---------TSIN---NDLL----  212 (250)
Q Consensus       152 ---~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---------~~~~---~~~~----  212 (250)
                         ......+..+.||.+.|.+++|.....+.-+|+++|+|..||||.+.-.....         ....   ...+    
T Consensus       175 s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~  254 (764)
T KOG1063|consen  175 SSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQ  254 (764)
T ss_pred             ccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEE
Confidence               23556778899999999999998533334589999999999999876443110         0000   0001    


Q ss_pred             ------eeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          213 ------IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       213 ------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                            ..+.+|...|+++.|+| .+..|++++.|.++.+|.
T Consensus       255 ~~is~eall~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~  295 (764)
T KOG1063|consen  255 YRISFEALLMGHEDWVYSVWWHP-EGLDLLSASADKSMIIWK  295 (764)
T ss_pred             EEEehhhhhcCcccceEEEEEcc-chhhheecccCcceEEEe
Confidence                  13359999999999998 777899999999999996

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.83  E-value=1.3e-18  Score=123.39  Aligned_cols=215  Identities=14%  Similarity=0.054  Sum_probs=148.9

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc-ccCCCCCEEEEE
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD-MLDKTNKICVVA  101 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~l~~~  101 (250)
                      -...+.|+|||. .|++-+.|..+++|++...-.-......................|+.-.|.+.+ ...|+..++++.
T Consensus        51 f~kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   51 FLKGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hhccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            456889999999 899999999999999853110000000000000011111234567777776543 335688999999


Q ss_pred             eCCCeEEEEeCCCceeEeeccCCC----CCCccceeecccceeEEE-----eeeeeeccCeeeeeecc-----ccCcccc
Q 025649          102 KGDGVVDVINIESELNISRSKSTT----KPLKGSQSTSKVNIRDAE-----MEILDQSGGKRLHLDYS-----VGGHTAA  167 (250)
Q Consensus       102 ~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-----~~~h~~~  167 (250)
                      +.+.-|++||.-+|+.......-.    -....++.|+|||.+|+.     +..++............     -.+..+.
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            999999999999988765543321    145678999999999984     33344422111111111     2234678


Q ss_pred             EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC-CceEEE
Q 025649          168 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT-SKVVKV  246 (250)
Q Consensus       168 v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~v  246 (250)
                      +.|++|+|  .+...++.|+...++-|+.-...         .++..+.+|.+.|+.++|.+ +|+.|++|++ |.+|..
T Consensus       210 isc~a~sP--~~~~~~a~gsY~q~~giy~~~~~---------~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~  277 (406)
T KOG2919|consen  210 ISCFAFSP--MDSKTLAVGSYGQRVGIYNDDGR---------RPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILC  277 (406)
T ss_pred             eeeeeccC--CCCcceeeecccceeeeEecCCC---------CceeeecccCCCeeeEEecc-CcCeecccccCCCeEEE
Confidence            99999997  45568999999999999887776         67778889999999999998 8989999884 778999


Q ss_pred             EeCC
Q 025649          247 YSIS  250 (250)
Q Consensus       247 w~~~  250 (250)
                      ||++
T Consensus       278 WDiR  281 (406)
T KOG2919|consen  278 WDIR  281 (406)
T ss_pred             Eeeh
Confidence            9985

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.83  E-value=5e-19  Score=123.71  Aligned_cols=205  Identities=11%  Similarity=0.111  Sum_probs=147.9

Q ss_pred             eeccCCCCCeeeEEEcCCCCeEEEEecCC-------CeEEEEEccCCC---------CccceecCCCCCCCCCCcccCCC
Q 025649           15 SLRAGHSSICSSVQFIPWKPWEVISGGLD-------SKLVMWDFSKGR---------PNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus        15 ~l~~~h~~~v~~l~~~~~~~~~l~s~s~d-------g~v~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      .|. .|.+.|..|+-+|..+.+|+|+-.+       ....||.+....         ++..+...            +-.
T Consensus        58 vf~-h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldte------------avg  124 (370)
T KOG1007|consen   58 VFF-HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTE------------AVG  124 (370)
T ss_pred             hhh-cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHH------------HhC
Confidence            455 6788999999999888688877543       246789886432         12222211            335


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee-EeeccCC----CCCCccceeecc--cceeEEEee--eeee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN-ISRSKST----TKPLKGSQSTSK--VNIRDAEME--ILDQ  149 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~--~~~~  149 (250)
                      .|.|+.|.|      ++..+++-. |..|.+|++..+.. .......    ......+-+|+|  +|..+++.+  ....
T Consensus       125 ~i~cvew~P------ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~  197 (370)
T KOG1007|consen  125 KINCVEWEP------NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQF  197 (370)
T ss_pred             ceeeEEEcC------CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEE
Confidence            789999999      888888875 88999999998665 3332222    224456778888  788887632  2222


Q ss_pred             ccCeeeeeeccc-cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649          150 SGGKRLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT  228 (250)
Q Consensus       150 ~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  228 (250)
                      ++.++.+....+ .+|...|..+.|+|  ....+|++|+.||.|+|||.+..+        .++..+.+|...|+++.|+
T Consensus       198 ~D~RT~~~~~sI~dAHgq~vrdlDfNp--nkq~~lvt~gDdgyvriWD~R~tk--------~pv~el~~HsHWvW~VRfn  267 (370)
T KOG1007|consen  198 WDLRTMKKNNSIEDAHGQRVRDLDFNP--NKQHILVTCGDDGYVRIWDTRKTK--------FPVQELPGHSHWVWAVRFN  267 (370)
T ss_pred             EEccchhhhcchhhhhcceeeeccCCC--CceEEEEEcCCCccEEEEeccCCC--------ccccccCCCceEEEEEEec
Confidence            233333332233 46888899999994  335688999999999999999864        5667888999999999999


Q ss_pred             CCCCCeEEEeeCCceEEEEeC
Q 025649          229 PTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       229 ~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      |...++|++|+.|..|.+|..
T Consensus       268 ~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  268 PEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             CccceEEEecCCCceeEEEec
Confidence            988889999999999999864

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.7e-18  Score=137.56  Aligned_cols=195  Identities=12%  Similarity=0.124  Sum_probs=143.2

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      ||.+|...+++.-..|. ..+-++.+++|+.+|+ +++.||.|-.|++-+..+......++ +            |.++|
T Consensus        77 tv~~y~fps~~~~~iL~-Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lr-g------------h~apV  141 (933)
T KOG1274|consen   77 TVLRYKFPSGEEDTILA-RFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLR-G------------HDAPV  141 (933)
T ss_pred             eEEEeeCCCCCccceee-eeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeec-c------------cCCce
Confidence            45666666666554555 5667899999999999 89999999999999998887777776 3            68999


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC-------CCCCCccceeecccceeEEEeeeeee---c
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS-------TTKPLKGSQSTSKVNIRDAEMEILDQ---S  150 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~---~  150 (250)
                      .++.+.|      ++++||+.+.||.|++||+.++.....+..       .....+..++|+|+|..++..+..+.   .
T Consensus       142 l~l~~~p------~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy  215 (933)
T KOG1274|consen  142 LQLSYDP------KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVY  215 (933)
T ss_pred             eeeeEcC------CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEE
Confidence            9999999      999999999999999999998776544322       11356778999999777764332211   1


Q ss_pred             cCeeeeeecccc--CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649          151 GGKRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT  228 (250)
Q Consensus       151 ~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  228 (250)
                      .....+....+.  .+...+..++|+   |+|+|||+++.||.|.|||..+.         +.    ......|.+++|.
T Consensus       216 ~r~~we~~f~Lr~~~~ss~~~~~~ws---PnG~YiAAs~~~g~I~vWnv~t~---------~~----~~~~~~Vc~~aw~  279 (933)
T KOG1274|consen  216 SRKGWELQFKLRDKLSSSKFSDLQWS---PNGKYIAASTLDGQILVWNVDTH---------ER----HEFKRAVCCEAWK  279 (933)
T ss_pred             ccCCceeheeecccccccceEEEEEc---CCCcEEeeeccCCcEEEEecccc---------hh----ccccceeEEEecC
Confidence            122222222332  244458999999   89999999999999999999983         11    1223467888888


Q ss_pred             CCCCC
Q 025649          229 PTESE  233 (250)
Q Consensus       229 ~~~~~  233 (250)
                      | +..
T Consensus       280 p-~~n  283 (933)
T KOG1274|consen  280 P-NAN  283 (933)
T ss_pred             C-CCC
Confidence            7 443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.81  E-value=2e-18  Score=133.43  Aligned_cols=210  Identities=15%  Similarity=0.094  Sum_probs=150.6

Q ss_pred             eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649           14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK   93 (250)
Q Consensus        14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (250)
                      ..+. ||.+.|++++|+|.|+ +|++.|.|.+-|++-.- |+... +.       +......|--.++|+++-+      
T Consensus       355 ~~iS-GH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~w-g~q~~-wH-------EiaRPQiHGyDl~c~~~vn------  417 (764)
T KOG1063|consen  355 PVIS-GHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARW-GRQQE-WH-------EIARPQIHGYDLTCLSFVN------  417 (764)
T ss_pred             cccc-cccccceeeeecCCCC-EEEEeccccceeeeccc-ccccc-ee-------eecccccccccceeeehcc------
Confidence            4456 9999999999999999 89999999999999765 22221 21       1112223455677788775      


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCce----------e-------E-------------eec--------------c-------
Q 025649           94 TNKICVVAKGDGVVDVINIESEL----------N-------I-------------SRS--------------K-------  122 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~----------~-------~-------------~~~--------------~-------  122 (250)
                      ....+++|...+.+|+|+.....          .       +             ...              +       
T Consensus       418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p  497 (764)
T KOG1063|consen  418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP  497 (764)
T ss_pred             CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence            57788899999999999875310          0       0             000              0       


Q ss_pred             ------------------------CCCCCCccceeecccceeEEEeee--------eeeccCeeeeeeccccCccccEEE
Q 025649          123 ------------------------STTKPLKGSQSTSKVNIRDAEMEI--------LDQSGGKRLHLDYSVGGHTAAASC  170 (250)
Q Consensus       123 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~h~~~v~~  170 (250)
                                              ..+...+.+++.+|+|+++++.+-        .-.+....-...+.+.+|.-.|+.
T Consensus       498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~  577 (764)
T KOG1063|consen  498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTR  577 (764)
T ss_pred             hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEE
Confidence                                    012335677888999999986321        111222223334578999999999


Q ss_pred             EEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ++||   |+|++|++.|.|+++.+|.........     ......+.|+.-|++..|+| ++.+|+|+|+|.+|++|..
T Consensus       578 l~FS---pdg~~LLsvsRDRt~sl~~~~~~~~~e-----~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  578 LAFS---PDGRYLLSVSRDRTVSLYEVQEDIKDE-----FRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             EEEC---CCCcEEEEeecCceEEeeeeecccchh-----hhhccccccceEEEEcccCc-ccceeEEecCCceEEEEec
Confidence            9999   999999999999999999886543221     12334678999999999998 8889999999999999975

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=7.3e-19  Score=124.69  Aligned_cols=203  Identities=14%  Similarity=0.164  Sum_probs=143.2

Q ss_pred             CCCeeeEEEc-------CCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649           21 SSICSSVQFI-------PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK   93 (250)
Q Consensus        21 ~~~v~~l~~~-------~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (250)
                      ...|...+|-       |+.. ++++.+.+.-|.+||..+|+....+..-.  .      .-.-...++++|+|      
T Consensus       104 g~tvydy~wYs~M~s~qP~t~-l~a~ssr~~PIh~wdaftG~lraSy~~yd--h------~de~taAhsL~Fs~------  168 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTN-LFAVSSRDQPIHLWDAFTGKLRASYRAYD--H------QDEYTAAHSLQFSP------  168 (406)
T ss_pred             CCEEEEEEeeeccccCCCccc-eeeeccccCceeeeeccccccccchhhhh--h------HHhhhhheeEEecC------
Confidence            3456666664       5555 89999999999999999998877665210  0      00112457899999      


Q ss_pred             CCCEEEEEeCCCeEEEEeC-CCceeE------eeccCCCCCCccceeecccceeEEEeeeeeec----cCeeeeeecccc
Q 025649           94 TNKICVVAKGDGVVDVINI-ESELNI------SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLHLDYSVG  162 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  162 (250)
                      ||.+|++|. ...|++||+ +.|...      ...+......+.+++|+|-...+..+++....    ......++..+.
T Consensus       169 DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg  247 (406)
T KOG2919|consen  169 DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG  247 (406)
T ss_pred             CCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec
Confidence            999999875 588999999 555422      11123335788999999977644445554333    223445667778


Q ss_pred             CccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecCCCcceecccccceeeeeeccCC-ceeEEEec-CCCCCeEEEee
Q 025649          163 GHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTT-PTESENLVVCD  239 (250)
Q Consensus       163 ~h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~~~l~s~~  239 (250)
                      +|.+.|+.+.|.   ++|+.|++|+. |-.|..||++...        .++-.+..|.. .-..|.|. .+++++|++|+
T Consensus       248 gh~gGvThL~~~---edGn~lfsGaRk~dkIl~WDiR~~~--------~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~  316 (406)
T KOG2919|consen  248 GHGGGVTHLQWC---EDGNKLFSGARKDDKILCWDIRYSR--------DPVYALERHVGDTNQRILFDLDPKGEILASGD  316 (406)
T ss_pred             ccCCCeeeEEec---cCcCeecccccCCCeEEEEeehhcc--------chhhhhhhhccCccceEEEecCCCCceeeccC
Confidence            999999999999   89999999986 7799999999864        34444555544 22223232 13789999999


Q ss_pred             CCceEEEEeCC
Q 025649          240 TSKVVKVYSIS  250 (250)
Q Consensus       240 ~d~~i~vw~~~  250 (250)
                      .||.|++||+.
T Consensus       317 tdG~V~vwdlk  327 (406)
T KOG2919|consen  317 TDGSVRVWDLK  327 (406)
T ss_pred             CCccEEEEecC
Confidence            99999999973

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.81  E-value=4.9e-18  Score=123.43  Aligned_cols=174  Identities=13%  Similarity=0.150  Sum_probs=135.3

Q ss_pred             CcEEEEcccc-------eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649            1 MWQIIDIRQH-------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         1 ti~iwd~~~~-------~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~   73 (250)
                      ||.||++..+       +.+..|. ||...|--++|+|.-.+.|+|++.|.+|.+||+.+|+.+.++.            
T Consensus       105 ~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~------------  171 (472)
T KOG0303|consen  105 KVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD------------  171 (472)
T ss_pred             eEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC------------
Confidence            5889998644       3466788 9999999999999988799999999999999999999877776            


Q ss_pred             ccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe---------
Q 025649           74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM---------  144 (250)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  144 (250)
                        |++.|+++.|+-      +|.+|++.+.|+.||+||.++++.......+.........|-.+|. +++.         
T Consensus       172 --hpd~i~S~sfn~------dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq  242 (472)
T KOG0303|consen  172 --HPDMVYSMSFNR------DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQ  242 (472)
T ss_pred             --CCCeEEEEEecc------CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccc
Confidence              799999999998      9999999999999999999999999888777777888888888888 4433         


Q ss_pred             -eeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEE-eeCCCeEEEEecCCC
Q 025649          145 -EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS-GGNDKLVKVWDCSRF  200 (250)
Q Consensus       145 -~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s-~~~d~~i~iwd~~~~  200 (250)
                       +.|+.......-.+.++.... .|.---|.   ++..++.. |-.|+.|+.|.+...
T Consensus       243 ~aLwdp~nl~eP~~~~elDtSn-Gvl~PFyD---~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  243 IALWDPNNLEEPIALQELDTSN-GVLLPFYD---PDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             eeccCcccccCcceeEEeccCC-ceEEeeec---CCCCEEEEEecCCcceEEEEecCC
Confidence             233333333322334444332 33322334   66666554 556999999999875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.1e-18  Score=122.21  Aligned_cols=166  Identities=12%  Similarity=0.043  Sum_probs=113.6

Q ss_pred             CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEee--ccCC-CCCCccceeecccceeEEEeeeee
Q 025649           72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR--SKST-TKPLKGSQSTSKVNIRDAEMEILD  148 (250)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  148 (250)
                      .+..|.+.|++++|+.      +|++|++++.|+.|++|+++.......  +... +-...+.+.|.||.+.++. ....
T Consensus        81 ~LKgH~~~vt~~~FsS------dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv-~~~~  153 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSS------DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVV-SVKR  153 (420)
T ss_pred             hhhccCCceeeeEEcC------CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEE-EEcc
Confidence            3344889999999998      999999999999999999987332211  1111 1135677889999877663 1111


Q ss_pred             ec-----------cCe---eeeee---ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee-------
Q 025649          149 QS-----------GGK---RLHLD---YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ-------  204 (250)
Q Consensus       149 ~~-----------~~~---~~~~~---~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------  204 (250)
                      +.           ++.   .....   .--+.|.-.+..+-..   .++.+|++++.|..|.+||++ ++.++       
T Consensus       154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA---~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~  229 (420)
T KOG2096|consen  154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA---GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS  229 (420)
T ss_pred             CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec---CCceEEEEecCCCcEEEEecC-Cceeeeeccccc
Confidence            11           110   00000   0112355566666666   678999999999999999998 44332       


Q ss_pred             ----------------------------------cccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          205 ----------------------------------TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       205 ----------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                                                        +...-.....+.+|...|.+++|++ +...+++.|.||+++|||.
T Consensus       230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeec
Confidence                                              0111223346789999999999997 7888999999999999996

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.81  E-value=6e-18  Score=118.46  Aligned_cols=219  Identities=11%  Similarity=0.052  Sum_probs=155.8

Q ss_pred             cccceeeeeeccCCCCCeeeEEEcCCCC----eEEEEecCCCeEEEEEccCCCC----ccceecCCCCCCCCCCcccCCC
Q 025649            7 IRQHCLYKSLRAGHSSICSSVQFIPWKP----WEVISGGLDSKLVMWDFSKGRP----NKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         7 ~~~~~~~~~l~~~h~~~v~~l~~~~~~~----~~l~s~s~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      .++++.+..-...|.-+++.+.|.|+..    .+|||++.  .+|+|.+...+.    ...+...        .-.-+..
T Consensus        82 ~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~--------kns~~~a  151 (364)
T KOG0290|consen   82 EDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNN--------KNSEFCA  151 (364)
T ss_pred             cCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccC--------cccccCC
Confidence            3455555443335999999999999862    36666654  799999874221    1122211        0111445


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee--EeeccCCCCCCccceeecccceeEEEeeeeeec------
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN--ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS------  150 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  150 (250)
                      ++++..|+.     .+.+++.+++-|.+..+||++++..  +.+....+...+..++|...+..+++....|+.      
T Consensus       152 PlTSFDWne-----~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  152 PLTSFDWNE-----VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL  226 (364)
T ss_pred             ccccccccc-----CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence            788888886     5889999999999999999999743  444445566899999999988777654444443      


Q ss_pred             -cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC-CeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649          151 -GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT  228 (250)
Q Consensus       151 -~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  228 (250)
                       ..+-...+.+-.....+...++|++  .+-+++|+-..| ..|.|-|++...        .++..+.+|.+.|+.++|.
T Consensus       227 R~leHSTIIYE~p~~~~pLlRLswnk--qDpnymATf~~dS~~V~iLDiR~P~--------tpva~L~~H~a~VNgIaWa  296 (364)
T KOG0290|consen  227 RSLEHSTIIYEDPSPSTPLLRLSWNK--QDPNYMATFAMDSNKVVILDIRVPC--------TPVARLRNHQASVNGIAWA  296 (364)
T ss_pred             cccccceEEecCCCCCCcceeeccCc--CCchHHhhhhcCCceEEEEEecCCC--------cceehhhcCcccccceEec
Confidence             3332233333333345678889985  345688876554 579999999863        5667889999999999999


Q ss_pred             CCCCCeEEEeeCCceEEEEeCC
Q 025649          229 PTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       229 ~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      |.....|++++.|..+.+||+.
T Consensus       297 PhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  297 PHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             CCCCceeeecCCcceEEEEecc
Confidence            9888999999999999999974

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=2.5e-17  Score=120.04  Aligned_cols=227  Identities=14%  Similarity=0.097  Sum_probs=147.5

Q ss_pred             cEEEEcccce---------eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCC--
Q 025649            2 WQIIDIRQHC---------LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN--   70 (250)
Q Consensus         2 i~iwd~~~~~---------~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--   70 (250)
                      |+||-++.++         .+..|. .|...|+++.|+|+|. +|+||+++|.|.+|....-... --........+.  
T Consensus        38 iriW~v~r~~~~~~~~~V~y~s~Ls-~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~~~-~~d~e~~~~ke~w~  114 (434)
T KOG1009|consen   38 IRIWKVNRSEPGGGDMKVEYLSSLS-RHTRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVRIF-DADTEADLNKEKWV  114 (434)
T ss_pred             eeeeeeeecCCCCCceeEEEeeccc-CCcceeEEEEEcCCcC-eeeecCCCceEEEEEecCcCCc-cccchhhhCccceE
Confidence            7889876332         345677 8999999999999999 9999999999999987631110 000000000000  


Q ss_pred             --CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCC-----------------------
Q 025649           71 --AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT-----------------------  125 (250)
Q Consensus        71 --~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----------------------  125 (250)
                        .....|.+.++.++|+|      ++..+++++.|+.+++||+..|+.......+.                       
T Consensus       115 v~k~lr~h~~diydL~Ws~------d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~  188 (434)
T KOG1009|consen  115 VKKVLRGHRDDIYDLAWSP------DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRH  188 (434)
T ss_pred             EEEEecccccchhhhhccC------CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcc
Confidence              12233778999999999      99999999999999999999876544322211                       


Q ss_pred             -----------------------------------------CCCccceeecccceeEEE-eeeeeeccC-----------
Q 025649          126 -----------------------------------------KPLKGSQSTSKVNIRDAE-MEILDQSGG-----------  152 (250)
Q Consensus       126 -----------------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----------  152 (250)
                                                               +.....++|+|+|.++++ .+.......           
T Consensus       189 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsr  268 (434)
T KOG1009|consen  189 PEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSR  268 (434)
T ss_pred             cceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecc
Confidence                                                     011223456777777764 222211110           


Q ss_pred             -eeeeeeccccCccccEEEEEeecC---------------CCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee
Q 025649          153 -KRLHLDYSVGGHTAAASCVAFSMF---------------GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI  216 (250)
Q Consensus       153 -~~~~~~~~~~~h~~~v~~~~~~p~---------------~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  216 (250)
                       ...++...+.+-..++..+.|+|.               -|-+..++.++ ...|++||.++..        ++...-.
T Consensus       269 k~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~--------P~~~v~n  339 (434)
T KOG1009|consen  269 KDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLE--------PLAVVDN  339 (434)
T ss_pred             ccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEecccccc--------ceEEEee
Confidence             111233344555566667777651               12233455555 5689999999863        3333445


Q ss_pred             ccCCceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649          217 NLNKKVNWLCTTPTESENLVVCDTSKVVKVY  247 (250)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw  247 (250)
                      -|-..++.++|++ ||..++..|.||...+-
T Consensus       340 ihy~~iTDiaws~-dg~~l~vSS~DGyCS~v  369 (434)
T KOG1009|consen  340 IHYSAITDIAWSD-DGSVLLVSSTDGFCSLV  369 (434)
T ss_pred             eeeeeecceeecC-CCcEEEEeccCCceEEE
Confidence            6888999999997 99999999999977654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.79  E-value=7.5e-17  Score=116.34  Aligned_cols=188  Identities=16%  Similarity=0.162  Sum_probs=139.5

Q ss_pred             eeeEEEcCCCCeEEEEecCC--CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           24 CSSVQFIPWKPWEVISGGLD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        24 v~~l~~~~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      |-.+-|+..   ++|..+.+  ..+++.+++.+..+..+.+              +..|.++.++        .++|+++
T Consensus        49 IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f--------------pt~IL~VrmN--------r~RLvV~  103 (391)
T KOG2110|consen   49 IVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKTTICEIFF--------------PTSILAVRMN--------RKRLVVC  103 (391)
T ss_pred             EEEeecccc---eeEEEecCCCceEEEEEcccCceEEEEec--------------CCceEEEEEc--------cceEEEE
Confidence            444445544   55555444  4589999988888877774              4778888886        4566666


Q ss_pred             eCCCeEEEEeCCCceeEeeccCCC--CCCccceeecccceeEEEe-----eeeeeccCeeeeeeccccCccccEEEEEee
Q 025649          102 KGDGVVDVINIESELNISRSKSTT--KPLKGSQSTSKVNIRDAEM-----EILDQSGGKRLHLDYSVGGHTAAASCVAFS  174 (250)
Q Consensus       102 ~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  174 (250)
                      -.+. |+|||+++.+.+..+....  ...+..+++++.+.+++.-     |..-..+....+....+..|++.+.+++|+
T Consensus       104 Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs  182 (391)
T KOG2110|consen  104 LEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFS  182 (391)
T ss_pred             Eccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEEC
Confidence            5544 9999999999888877653  3446666666677788852     233333445666777888999999999999


Q ss_pred             cCCCCCcEEEEeeCCCe-EEEEecCCCcceecccccceeeeee-cc-CCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          175 MFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSINNDLLIKNI-NL-NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       175 p~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                         ++|.+|||+|..|+ ||||.+.+++...         .+. +. ...|.+++|+| ++++|++.|..++|.+|.+.
T Consensus       183 ---~~G~llATASeKGTVIRVf~v~~G~kl~---------eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  183 ---PDGTLLATASEKGTVIRVFSVPEGQKLY---------EFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             ---CCCCEEEEeccCceEEEEEEcCCccEee---------eeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEec
Confidence               99999999999885 8999999985443         221 21 34689999998 89999999999999999863

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.79  E-value=1.2e-17  Score=123.48  Aligned_cols=220  Identities=15%  Similarity=0.159  Sum_probs=151.4

Q ss_pred             CcEEEEcccc----eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            1 MWQIIDIRQH----CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         1 ti~iwd~~~~----~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      +|-+||+.+.    .-+..+. .|..+|.+|.|+|.+...+++.|.||+|++-|++++..-..+...           ..
T Consensus       211 ~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~-----------~d  278 (498)
T KOG4328|consen  211 QVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD-----------TD  278 (498)
T ss_pred             cEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC-----------cc
Confidence            4679999522    2345566 899999999999988778999999999999999876543333321           01


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe-------eeeee
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM-------EILDQ  149 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  149 (250)
                      ...+.++.|+.      +...++.+..=|...+||++++........-++..|.+++++|...+++..       ..||.
T Consensus       279 ~~~fs~~d~~~------e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~  352 (498)
T KOG4328|consen  279 NIWFSSLDFSA------ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDL  352 (498)
T ss_pred             ceeeeeccccC------CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeeh
Confidence            34567777776      666666666667999999998766443333334599999999988776643       34555


Q ss_pred             ccCeeee-eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC------ce
Q 025649          150 SGGKRLH-LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK------KV  222 (250)
Q Consensus       150 ~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~v  222 (250)
                      +...... ++-....|...|.+..||   |.+-.|+|.+.|..|+|||..-....      .+......|..      ..
T Consensus       353 R~l~~K~sp~lst~~HrrsV~sAyFS---Ps~gtl~TT~~D~~IRv~dss~~sa~------~~p~~~I~Hn~~t~RwlT~  423 (498)
T KOG4328|consen  353 RQLRGKASPFLSTLPHRRSVNSAYFS---PSGGTLLTTCQDNEIRVFDSSCISAK------DEPLGTIPHNNRTGRWLTP  423 (498)
T ss_pred             hhhcCCCCcceecccccceeeeeEEc---CCCCceEeeccCCceEEeeccccccc------CCccceeeccCcccccccc
Confidence            4433222 233344699999999999   55555999999999999998511100      11122333332      23


Q ss_pred             eEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          223 NWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       223 ~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      ...+|.| +..+|++|-.-..|-|+|
T Consensus       424 fKA~W~P-~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  424 FKAAWDP-DYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             hhheeCC-CccEEEEeccCcceeEEc
Confidence            4457888 777899998888888886

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.79  E-value=8e-17  Score=120.69  Aligned_cols=198  Identities=13%  Similarity=0.150  Sum_probs=151.1

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      +|.+....++.+|+.. +++|++.|+.+++|+  ..++..+...+              +++.++.|+|      .| .+
T Consensus       366 gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~~k~~wt~~~~--------------d~~~~~~fhp------sg-~v  421 (626)
T KOG2106|consen  366 GHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--DHKLEWTKIIE--------------DPAECADFHP------SG-VV  421 (626)
T ss_pred             ecccceeeEEcCCChh-heeeccCcceEEEcc--CCceeEEEEec--------------CceeEeeccC------cc-eE
Confidence            8999999999999998 899999999999999  55666666544              6789999999      77 99


Q ss_pred             EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc--------CeeeeeeccccCccccEEE
Q 025649           99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG--------GKRLHLDYSVGGHTAAASC  170 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~h~~~v~~  170 (250)
                      +.|...|...+.|.++...+..-..  ..++..++|+|+|.+++ +++-|...        ......+....+  .+|+.
T Consensus       422 a~Gt~~G~w~V~d~e~~~lv~~~~d--~~~ls~v~ysp~G~~lA-vgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ith  496 (626)
T KOG2106|consen  422 AVGTATGRWFVLDTETQDLVTIHTD--NEQLSVVRYSPDGAFLA-VGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITH  496 (626)
T ss_pred             EEeeccceEEEEecccceeEEEEec--CCceEEEEEcCCCCEEE-EecCCCeEEEEEECCCCcEEEEeeeecC--ceeEE
Confidence            9999999999999999555443333  58999999999999999 66655442        122222333333  89999


Q ss_pred             EEeecCCCCCcEEEEeeCCCeEEEEecCCCccee----------------------------------------------
Q 025649          171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ----------------------------------------------  204 (250)
Q Consensus       171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----------------------------------------------  204 (250)
                      +.|+   +|++++.+-+.|-.|..|.........                                              
T Consensus       497 LDwS---~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g  573 (626)
T KOG2106|consen  497 LDWS---SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFG  573 (626)
T ss_pred             eeec---CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCc
Confidence            9999   899999999999999999432221110                                              


Q ss_pred             --------cccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          205 --------TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       205 --------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                              -.+.......+.+|++-|.+++|.-.|. .+++.+.|..|..|++
T Consensus       574 ~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~-~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  574 KVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS-HLISTGKDTSIMQWRL  625 (626)
T ss_pred             eEEEEccccCCCcccceeeccccceeEEEEEeeCCc-eEEecCCCceEEEEEe
Confidence                    0111223356678999999999997554 5666559999999987

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.79  E-value=2.2e-17  Score=117.47  Aligned_cols=177  Identities=14%  Similarity=0.180  Sum_probs=128.7

Q ss_pred             eeeccCCCCCeeeEEEcC----CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649           14 KSLRAGHSSICSSVQFIP----WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD   89 (250)
Q Consensus        14 ~~l~~~h~~~v~~l~~~~----~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (250)
                      ..++..|+.+|..++|++    +....+++++. ..+.+|.....-.++.++.-.        ..-+++..+.++|+-..
T Consensus        31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~--------D~d~~Esfytcsw~yd~  101 (385)
T KOG1034|consen   31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYA--------DEDHDESFYTCSWSYDS  101 (385)
T ss_pred             eehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeecc--------CCCCCcceEEEEEEecC
Confidence            334447889999999984    33336666665 478888875433223332110        00134455566665311


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEE
Q 025649           90 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS  169 (250)
Q Consensus        90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  169 (250)
                      .  ...-++|+|+.-|.|++.|+.+++                                        +...+.+|...|+
T Consensus       102 ~--~~~p~la~~G~~GvIrVid~~~~~----------------------------------------~~~~~~ghG~sIN  139 (385)
T KOG1034|consen  102 N--TGNPFLAAGGYLGVIRVIDVVSGQ----------------------------------------CSKNYRGHGGSIN  139 (385)
T ss_pred             C--CCCeeEEeecceeEEEEEecchhh----------------------------------------hccceeccCccch
Confidence            0  024578888899999999998654                                        3346789999999


Q ss_pred             EEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          170 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       170 ~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .+.+.|  .+-++++++|.|..|++|++++..++      ..+....+|...|.++.|++ ++.+|++++.|..|++|++
T Consensus       140 eik~~p--~~~qlvls~SkD~svRlwnI~~~~Cv------~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l  210 (385)
T KOG1034|consen  140 EIKFHP--DRPQLVLSASKDHSVRLWNIQTDVCV------AVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRL  210 (385)
T ss_pred             hhhcCC--CCCcEEEEecCCceEEEEeccCCeEE------EEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEec
Confidence            999996  34579999999999999999998665      44555678999999999997 8999999999999999997


Q ss_pred             C
Q 025649          250 S  250 (250)
Q Consensus       250 ~  250 (250)
                      +
T Consensus       211 ~  211 (385)
T KOG1034|consen  211 N  211 (385)
T ss_pred             C
Confidence            4

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2e-17  Score=113.24  Aligned_cols=176  Identities=16%  Similarity=0.203  Sum_probs=118.5

Q ss_pred             eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC----CccceecCCCCCCCCCCcccCCCceeEEecCCC
Q 025649           13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR----PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA   88 (250)
Q Consensus        13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   88 (250)
                      +...+ +|.++|..++|..+   +|++|+. |.|+-|..+...    +...++...|...    ....-..|++|...| 
T Consensus        55 iv~eq-ahdgpiy~~~f~d~---~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~----~~~evPeINam~ldP-  124 (325)
T KOG0649|consen   55 IVPEQ-AHDGPIYYLAFHDD---FLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQV----DAVEVPEINAMWLDP-  124 (325)
T ss_pred             eeecc-ccCCCeeeeeeehh---heeeccC-ceEEEeeehhhhhhccchhhhhhcCcccc----CcccCCccceeEecc-
Confidence            44456 99999999999943   6777775 999999876432    1222222211111    112234577777777 


Q ss_pred             cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccE
Q 025649           89 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA  168 (250)
Q Consensus        89 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  168 (250)
                           ..+-++.++.|+.++-||+++|+.                                        .+++++|.+.|
T Consensus       125 -----~enSi~~AgGD~~~y~~dlE~G~i----------------------------------------~r~~rGHtDYv  159 (325)
T KOG0649|consen  125 -----SENSILFAGGDGVIYQVDLEDGRI----------------------------------------QREYRGHTDYV  159 (325)
T ss_pred             -----CCCcEEEecCCeEEEEEEecCCEE----------------------------------------EEEEcCCccee
Confidence                 666666666999999999998763                                        34789999999


Q ss_pred             EEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC-ceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649          169 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESENLVVCDTSKVVKVY  247 (250)
Q Consensus       169 ~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~i~vw  247 (250)
                      .++.-.   .....+++|++||++|+||++++++++....-+-......|.+ .|-+++.   +...|++|+ ...+.+|
T Consensus       160 H~vv~R---~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~lslw  232 (325)
T KOG0649|consen  160 HSVVGR---NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPKLSLW  232 (325)
T ss_pred             eeeeec---ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCceeEE
Confidence            999875   4456799999999999999999987754433222223334433 3666655   344666665 5568888


Q ss_pred             eCC
Q 025649          248 SIS  250 (250)
Q Consensus       248 ~~~  250 (250)
                      .++
T Consensus       233 hLr  235 (325)
T KOG0649|consen  233 HLR  235 (325)
T ss_pred             ecc
Confidence            874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.77  E-value=6.9e-18  Score=122.91  Aligned_cols=178  Identities=15%  Similarity=0.213  Sum_probs=136.5

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc---ceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCE
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK---IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI   97 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (250)
                      ..+|..+.|.+++.+.|+||+.|..|++|-+..+..-.   .+.+       ...+..|...|+.+.|+|      +|.+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y-------~s~Ls~H~~aVN~vRf~p------~gel   79 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEY-------LSSLSRHTRAVNVVRFSP------DGEL   79 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEE-------eecccCCcceeEEEEEcC------CcCe
Confidence            45899999999887689999999999999987654332   2221       123445889999999999      9999


Q ss_pred             EEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCC
Q 025649           98 CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG  177 (250)
Q Consensus        98 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  177 (250)
                      |++|+.+|.|.+|-...-...    ...  .  ....                ..+.-...+.+.+|...|..++|+   
T Consensus        80 LASg~D~g~v~lWk~~~~~~~----~~d--~--e~~~----------------~ke~w~v~k~lr~h~~diydL~Ws---  132 (434)
T KOG1009|consen   80 LASGGDGGEVFLWKQGDVRIF----DAD--T--EADL----------------NKEKWVVKKVLRGHRDDIYDLAWS---  132 (434)
T ss_pred             eeecCCCceEEEEEecCcCCc----ccc--c--hhhh----------------CccceEEEEEecccccchhhhhcc---
Confidence            999999999999987641100    000  0  0000                011122345677899999999999   


Q ss_pred             CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          178 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       178 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      |+++++++++.|..+++||+..+         .+.....+|..-|..++|.| -++++++-+.|...+.+.
T Consensus       133 ~d~~~l~s~s~dns~~l~Dv~~G---------~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~  193 (434)
T KOG1009|consen  133 PDSNFLVSGSVDNSVRLWDVHAG---------QLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFS  193 (434)
T ss_pred             CCCceeeeeeccceEEEEEeccc---------eeEeeccccccccceeecch-hhhhhhhhccCcccceee
Confidence            89999999999999999999998         77778889999999999998 778899988887666554

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.9e-17  Score=118.27  Aligned_cols=150  Identities=18%  Similarity=0.233  Sum_probs=115.7

Q ss_pred             EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  115 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  115 (250)
                      .++++-..|.|++||..+++.+..++..             +..+..+.|..    ......+.+++.||+|++||++..
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~-------------~~~~N~vrf~~----~ds~h~v~s~ssDG~Vr~wD~Rs~  104 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGP-------------PATTNGVRFIS----CDSPHGVISCSSDGTVRLWDIRSQ  104 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCC-------------CCcccceEEec----CCCCCeeEEeccCCeEEEEEeecc
Confidence            6888888999999999999999999844             66777787764    114678999999999999999975


Q ss_pred             eeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCcc-ccEEEEEeecCCCCCcEEEEee----CCC
Q 025649          116 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCVAFSMFGERGKYLISGG----NDK  190 (250)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~l~s~~----~d~  190 (250)
                      .....+                                      .+..+. .+-.|++.+   -+++.+++|.    .|-
T Consensus       105 ~e~a~~--------------------------------------~~~~~~~~~f~~ld~n---ck~~ii~~GtE~~~s~A  143 (376)
T KOG1188|consen  105 AESARI--------------------------------------SWTQQSGTPFICLDLN---CKKNIIACGTELTRSDA  143 (376)
T ss_pred             hhhhhe--------------------------------------eccCCCCCcceEeecc---CcCCeEEeccccccCce
Confidence            433221                                      222333 345666665   4667787775    466


Q ss_pred             eEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          191 LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       191 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .|.+||.+..++       .+-.....|...|+++.|+|.+..+|++||.||.|.|||+.
T Consensus       144 ~v~lwDvR~~qq-------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  144 SVVLWDVRSEQQ-------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             EEEEEEeccccc-------hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence            899999999753       13334568999999999999999999999999999999974

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.77  E-value=2.3e-15  Score=118.02  Aligned_cols=212  Identities=22%  Similarity=0.324  Sum_probs=155.6

Q ss_pred             CcEEEEccc-ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC-CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~-~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      ++++||... ......+. .|...|..++|+|++. .+++++. |+.+++|+...+..+..+..             |..
T Consensus       135 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~  199 (466)
T COG2319         135 TVKLWDLSTPGKLIRTLE-GHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAG-------------HTD  199 (466)
T ss_pred             cEEEEEecCCCeEEEEEe-cCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeecc-------------CCC
Confidence            478999987 78888888 9999999999999999 7888885 99999999998776666652             467


Q ss_pred             ceeEEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCCceeEe-eccCCCCCCccceeecccceeEEE------eeeeeec
Q 025649           79 FVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQSTSKVNIRDAE------MEILDQS  150 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  150 (250)
                      .+.+++++|      ++. .+++++.|+.|++||...+.... ....+. ... ...|+|++..+++      ...++..
T Consensus       200 ~v~~~~~~~------~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~  271 (466)
T COG2319         200 PVSSLAFSP------DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS-DSV-VSSFSPDGSLLASGSSDGTIRLWDLR  271 (466)
T ss_pred             ceEEEEEcC------CcceEEEEecCCCcEEEEECCCCcEEeeecCCCC-cce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence            899999998      777 55555999999999988666665 333332 222 2289999866552      2223322


Q ss_pred             cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee--eccCCceeEEEec
Q 025649          151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN--INLNKKVNWLCTT  228 (250)
Q Consensus       151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~  228 (250)
                      ....  .+..+.+|...+.++.|.   |++..+++++.|+.+.+||.....         .....  ..|...+..+.+ 
T Consensus       272 ~~~~--~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-  336 (466)
T COG2319         272 SSSS--LLRTLSGHSSSVLSVAFS---PDGKLLASGSSDGTVRLWDLETGK---------LLSSLTLKGHEGPVSSLSF-  336 (466)
T ss_pred             CCCc--EEEEEecCCccEEEEEEC---CCCCEEEEeeCCCcEEEEEcCCCc---------eEEEeeecccCCceEEEEE-
Confidence            2222  122226788999999999   777888888889999999988863         22233  377778899988 


Q ss_pred             CCCCCeEEEe-eCCceEEEEeCC
Q 025649          229 PTESENLVVC-DTSKVVKVYSIS  250 (250)
Q Consensus       229 ~~~~~~l~s~-~~d~~i~vw~~~  250 (250)
                      +.++..++.+ ..|+.+.+|++.
T Consensus       337 ~~~~~~~~~~~~~d~~~~~~~~~  359 (466)
T COG2319         337 SPDGSLLVSGGSDDGTIRLWDLR  359 (466)
T ss_pred             CCCCCEEEEeecCCCcEEeeecC
Confidence            5453555555 678899999863

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.76  E-value=8.7e-18  Score=129.36  Aligned_cols=150  Identities=13%  Similarity=0.229  Sum_probs=117.7

Q ss_pred             ecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE
Q 025649           40 GGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  118 (250)
Q Consensus        40 ~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  118 (250)
                      .+..|.|-||+++.. +.....          .-..+....|+.+.|.|     .|...|++++.||.|++|.+..+-..
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv----------~p~l~Ngt~vtDl~WdP-----FD~~rLAVa~ddg~i~lWr~~a~gl~  663 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGV----------MPGLFNGTLVTDLHWDP-----FDDERLAVATDDGQINLWRLTANGLP  663 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCccc----------ccccccCceeeecccCC-----CChHHeeecccCceEEEEEeccCCCC
Confidence            455789999999753 221111          01112356789999999     68999999999999999999864322


Q ss_pred             eeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecC
Q 025649          119 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  198 (250)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~  198 (250)
                      ..                                 ...+...+..|...|+++.|+|.  -.+.|++++.|-+|++||++
T Consensus       664 e~---------------------------------~~tPe~~lt~h~eKI~slRfHPL--AadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  664 EN---------------------------------EMTPEKILTIHGEKITSLRFHPL--AADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             cc---------------------------------cCCcceeeecccceEEEEEecch--hhhHhhhhhccceeeeeehh
Confidence            11                                 11223467789999999999963  35789999999999999999


Q ss_pred             CCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          199 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ++         .....+.+|.+.|..++|+| +|+.+++.+.||+|++|+-
T Consensus       709 ~~---------~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~P  749 (1012)
T KOG1445|consen  709 NA---------KLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEP  749 (1012)
T ss_pred             hh---------hhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCC
Confidence            98         55668899999999999998 9999999999999999974

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=9.1e-17  Score=125.95  Aligned_cols=205  Identities=16%  Similarity=0.050  Sum_probs=130.0

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC---CeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD---SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      +|.+||..... ...+. .|...+.+.+|+|+|+ .|+.++.+   ..|.+||+.+++.......              +
T Consensus       185 ~i~i~d~dg~~-~~~lt-~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--------------~  247 (429)
T PRK01742        185 EVRVADYDGFN-QFIVN-RSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASF--------------R  247 (429)
T ss_pred             EEEEECCCCCC-ceEec-cCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecC--------------C
Confidence            36788875443 55677 7888999999999999 67776543   4799999987754322211              1


Q ss_pred             CceeEEecCCCcccCCCCCEEEEEe-CCCeEEEE--eCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----c
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVI--NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----S  150 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  150 (250)
                      .....++|+|      +++.|+.++ .+|.+.||  |+.++..... .. ....+....|+|||+.++.....+.    +
T Consensus       248 g~~~~~~wSP------DG~~La~~~~~~g~~~Iy~~d~~~~~~~~l-t~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~  319 (429)
T PRK01742        248 GHNGAPAFSP------DGSRLAFASSKDGVLNIYVMGANGGTPSQL-TS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVY  319 (429)
T ss_pred             CccCceeECC------CCCEEEEEEecCCcEEEEEEECCCCCeEee-cc-CCCCcCCEEECCCCCEEEEEECCCCCceEE
Confidence            2334678998      999887764 67766555  6665554332 22 2346778999999998774322111    1


Q ss_pred             cCee-eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649          151 GGKR-LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       151 ~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                      .... ......+ .+..  ....|+   |+|++|+..+.++ +.+||+.++...         .....+  ......|+|
T Consensus       320 ~~~~~~~~~~~l-~~~~--~~~~~S---pDG~~ia~~~~~~-i~~~Dl~~g~~~---------~lt~~~--~~~~~~~sP  381 (429)
T PRK01742        320 RMSASGGGASLV-GGRG--YSAQIS---ADGKTLVMINGDN-VVKQDLTSGSTE---------VLSSTF--LDESPSISP  381 (429)
T ss_pred             EEECCCCCeEEe-cCCC--CCccCC---CCCCEEEEEcCCC-EEEEECCCCCeE---------EecCCC--CCCCceECC
Confidence            1100 0001111 2322  456788   8999998887765 556999887321         111111  224567887


Q ss_pred             CCCCeEEEeeCCceEEEEeC
Q 025649          230 TESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       230 ~~~~~l~s~~~d~~i~vw~~  249 (250)
                       ||++|+.++.++.+.+|++
T Consensus       382 -dG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        382 -NGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             -CCCEEEEEEcCCCceEEEE
Confidence             8999999988888887764

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.76  E-value=1.3e-17  Score=128.43  Aligned_cols=166  Identities=11%  Similarity=0.182  Sum_probs=123.2

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV   99 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~   99 (250)
                      ....|+.+.|.|-....|+.+++||.|++|.+..+.......      .....+..|.+.|+++.|+|     .....|+
T Consensus       626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~------tPe~~lt~h~eKI~slRfHP-----LAadvLa  694 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM------TPEKILTIHGEKITSLRFHP-----LAADVLA  694 (1012)
T ss_pred             cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC------CcceeeecccceEEEEEecc-----hhhhHhh
Confidence            456799999999776589999999999999997654322221      22234455789999999999     4678999


Q ss_pred             EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649          100 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER  179 (250)
Q Consensus       100 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  179 (250)
                      +++.|-+|++||+++..                                        ....+.+|.+.|..++||   |+
T Consensus       695 ~asyd~Ti~lWDl~~~~----------------------------------------~~~~l~gHtdqIf~~AWS---pd  731 (1012)
T KOG1445|consen  695 VASYDSTIELWDLANAK----------------------------------------LYSRLVGHTDQIFGIAWS---PD  731 (1012)
T ss_pred             hhhccceeeeeehhhhh----------------------------------------hhheeccCcCceeEEEEC---CC
Confidence            99999999999999754                                        234678999999999999   99


Q ss_pred             CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-CCceeEEEecCCCCCeEEEeeCC----ceEEEEe
Q 025649          180 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTS----KVVKVYS  248 (250)
Q Consensus       180 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d----~~i~vw~  248 (250)
                      |+.+++.+.||+|++|+.+++...        +..-.+. ...-..+.|.- ||+++++.+.|    +.|.+||
T Consensus       732 Gr~~AtVcKDg~~rVy~Prs~e~p--------v~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~  796 (1012)
T KOG1445|consen  732 GRRIATVCKDGTLRVYEPRSREQP--------VYEGKGPVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMYD  796 (1012)
T ss_pred             CcceeeeecCceEEEeCCCCCCCc--------cccCCCCccCcceeEEEEe-cCcEEEEecccccchhhhhhhh
Confidence            999999999999999999987532        1111111 11222334443 88888777655    3466665

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=1.2e-15  Score=123.79  Aligned_cols=225  Identities=13%  Similarity=0.125  Sum_probs=149.5

Q ss_pred             CcEEEEcccceeeeeeccC--CCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEcc-CC-C---CccceecCCCCCCCCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAG--HSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFS-KG-R---PNKIVNFGLPENNGNAG   72 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~--h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~-~~-~---~~~~~~~~~~~~~~~~~   72 (250)
                      +|++||.+.++.+..|.++  ....|+.+.+-. +...++++|+.||.||||+-- ++ +   .+..+. +..+....  
T Consensus      1087 ~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~-~Ls~~~~~-- 1163 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWS-SLSDQLPG-- 1163 (1387)
T ss_pred             eEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeec-cccccCcc--
Confidence            4899999999999888722  235788998754 333489999999999999743 22 1   111111 10000000  


Q ss_pred             cccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeeccc-ceeEEEeeeeeecc
Q 025649           73 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV-NIRDAEMEILDQSG  151 (250)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  151 (250)
                         ..+.-.-+.|..      ...+|++++.-..|+|||+...+....+.......++.+.-+.. |+.++ +|..|+..
T Consensus      1164 ---~r~~~~v~dWqQ------~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~-AGfaDGsv 1233 (1387)
T KOG1517|consen 1164 ---ARGTGLVVDWQQ------QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA-AGFADGSV 1233 (1387)
T ss_pred             ---CCCCCeeeehhh------hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE-EeecCCce
Confidence               011112345554      44555555568999999999988888877776677777766544 56666 66655553


Q ss_pred             -------CeeeeeeccccCcccc--EEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeecc---
Q 025649          152 -------GKRLHLDYSVGGHTAA--ASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL---  218 (250)
Q Consensus       152 -------~~~~~~~~~~~~h~~~--v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---  218 (250)
                             ......+...+.|...  |..+.+.   +.|- .|++|+.||.|++||++.....      ..+ ....|   
T Consensus      1234 RvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq---~~G~~elvSgs~~G~I~~~DlR~~~~e------~~~-~iv~~~~y 1303 (1387)
T KOG1517|consen 1234 RVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ---RQGLGELVSGSQDGDIQLLDLRMSSKE------TFL-TIVAHWEY 1303 (1387)
T ss_pred             EEeecccCCccccceeecccCCcccceeEEee---cCCCcceeeeccCCeEEEEecccCccc------ccc-eeeecccc
Confidence                   2333355667778776  9999998   6554 5999999999999999984211      111 22222   


Q ss_pred             CCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          219 NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ++..+++..++ +...+|+|+. +.|+||++.
T Consensus      1304 Gs~lTal~VH~-hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1304 GSALTALTVHE-HAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred             Cccceeeeecc-CCCeeeecCc-ceEEEEecC
Confidence            33588999987 7778999987 999999863

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.74  E-value=3.9e-18  Score=134.64  Aligned_cols=207  Identities=18%  Similarity=0.182  Sum_probs=148.3

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |+||..++..++...+ ||.+.|+.++.+.+.. +++++|.|..|++|.+.++.++..+. +            |.+.|+
T Consensus       214 vKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~-~iaaaS~D~vIrvWrl~~~~pvsvLr-g------------htgavt  278 (1113)
T KOG0644|consen  214 VKIWSMETARCLASCR-GHSGDITDLAVSSNNT-MIAAASNDKVIRVWRLPDGAPVSVLR-G------------HTGAVT  278 (1113)
T ss_pred             eeeeeccchhhhccCC-CCccccchhccchhhh-hhhhcccCceEEEEecCCCchHHHHh-c------------ccccee
Confidence            7899999999999999 9999999999999888 89999999999999999999998887 4            689999


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec----cCCCCCCccceeecccceeEEEeeeeeeccCeeeee
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS----KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL  157 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (250)
                      +++|+|      -    .+.+.||++++||.+-. .....    ....+..+.++.|...+..++ .+..+.....  ..
T Consensus       279 aiafsP------~----~sss~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~~~~~f~-Tgs~d~ea~n--~e  344 (1113)
T KOG0644|consen  279 AIAFSP------R----ASSSDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFENNGDRFL-TGSRDGEARN--HE  344 (1113)
T ss_pred             eeccCc------c----ccCCCCCceEecccccc-ccccCCCCCCcccccceeeeeccccccccc-cccCCccccc--ch
Confidence            999999      2    27789999999999821 11111    111122333344444443333 2222221111  01


Q ss_pred             eccccCccccEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          158 DYSVGGHTAAASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      ...+..+...+.-+.++   .+ ..+.+++-.+-.+++|++.++         .+.....+|...++.+.++|-+.....
T Consensus       345 ~~~l~~~~~~lif~t~s---sd~~~~~~~ar~~~~~~vwnl~~g---------~l~H~l~ghsd~~yvLd~Hpfn~ri~m  412 (1113)
T KOG0644|consen  345 FEQLAWRSNLLIFVTRS---SDLSSIVVTARNDHRLCVWNLYTG---------QLLHNLMGHSDEVYVLDVHPFNPRIAM  412 (1113)
T ss_pred             hhHhhhhccceEEEecc---ccccccceeeeeeeEeeeeecccc---------hhhhhhcccccceeeeeecCCCcHhhh
Confidence            11222333333222322   22 245666667888999999998         666778899999999999998888888


Q ss_pred             EeeCCceEEEEeC
Q 025649          237 VCDTSKVVKVYSI  249 (250)
Q Consensus       237 s~~~d~~i~vw~~  249 (250)
                      +++.||...|||+
T Consensus       413 sag~dgst~iwdi  425 (1113)
T KOG0644|consen  413 SAGYDGSTIIWDI  425 (1113)
T ss_pred             hccCCCceEeeec
Confidence            9999999999996

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.6e-16  Score=116.00  Aligned_cols=169  Identities=17%  Similarity=0.167  Sum_probs=133.6

Q ss_pred             eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC------CCCccceecCCCCCCCCCCcccCCCceeEEecCCC
Q 025649           15 SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK------GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA   88 (250)
Q Consensus        15 ~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   88 (250)
                      .+. +|.+.|++|.|+.+++ .|++|+.|..+++|++..      .+++....-+            |...|.+++|.. 
T Consensus        51 D~~-~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~------------H~SNIF~L~F~~-  115 (609)
T KOG4227|consen   51 DVR-EHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHP------------HRSNIFSLEFDL-  115 (609)
T ss_pred             hhh-hhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCc------------cccceEEEEEcc-
Confidence            455 8999999999999998 899999999999999863      3444444333            678999999997 


Q ss_pred             cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccE
Q 025649           89 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA  168 (250)
Q Consensus        89 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  168 (250)
                           .++.+.+|..+++|.+.|+++.+.+.....                                      ....+.|
T Consensus       116 -----~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~--------------------------------------~~~~~~V  152 (609)
T KOG4227|consen  116 -----ENRFLYSGERWGTVIKHDIETKQSIYVANE--------------------------------------NNNRGDV  152 (609)
T ss_pred             -----CCeeEecCCCcceeEeeecccceeeeeecc--------------------------------------cCcccce
Confidence                 888999999999999999998664432211                                      2234589


Q ss_pred             EEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          169 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       169 ~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      +.+..+   |..+.|++.+.++.|.+||.+.....      -.+...........++.|+|....+|++.+..+-+.+||
T Consensus       153 Y~m~~~---P~DN~~~~~t~~~~V~~~D~Rd~~~~------~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D  223 (609)
T KOG4227|consen  153 YHMDQH---PTDNTLIVVTRAKLVSFIDNRDRQNP------ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFD  223 (609)
T ss_pred             eecccC---CCCceEEEEecCceEEEEeccCCCCC------CceeeecCCCccceeeeecCCCceeEEeccccCCCCcee
Confidence            999999   66789999999999999999986432      112233445566788899998899999999999999999


Q ss_pred             CC
Q 025649          249 IS  250 (250)
Q Consensus       249 ~~  250 (250)
                      ++
T Consensus       224 ~R  225 (609)
T KOG4227|consen  224 RR  225 (609)
T ss_pred             ec
Confidence            74

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.73  E-value=2.9e-16  Score=121.85  Aligned_cols=191  Identities=16%  Similarity=0.193  Sum_probs=142.3

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  102 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  102 (250)
                      .|..++|-|||..+++.++  ..+.+||.+.|..+.+++ +            |.+.|++++++.      +|+.+++|+
T Consensus        14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtLK-g------------HKDtVycVAys~------dGkrFASG~   72 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPLK-G------------HKDTVYCVAYAK------DGKRFASGS   72 (1081)
T ss_pred             chheeEECCCCceEEEecC--CEEEEEeCCCcccccccc-c------------ccceEEEEEEcc------CCceeccCC
Confidence            7999999999984444443  479999999999999998 4            689999999998      999999999


Q ss_pred             CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec--cCeeeeeeccccCccccEEEEEeecCCCCC
Q 025649          103 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS--GGKRLHLDYSVGGHTAAASCVAFSMFGERG  180 (250)
Q Consensus       103 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  180 (250)
                      .|+.|.+|...-   ....+-.+...+.|+.|+|-...+++....+..  ..... .+.+.+ ....+.+++|.   .+|
T Consensus        73 aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK-~V~K~k-ss~R~~~CsWt---nDG  144 (1081)
T KOG1538|consen   73 ADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK-SVSKHK-SSSRIICCSWT---NDG  144 (1081)
T ss_pred             CceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhh-hHHhhh-hheeEEEeeec---CCC
Confidence            999999998653   333444556889999999999998854333322  22111 111111 23567888888   899


Q ss_pred             cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC----CeEEEeeCCceEEEEeC
Q 025649          181 KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES----ENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       181 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~s~~~d~~i~vw~~  249 (250)
                      ++++.|-.+|+|.+=+-.....       -.+..-.+.+++|++++|+|..+    ..+++.....++.+|.+
T Consensus       145 qylalG~~nGTIsiRNk~gEek-------~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L  210 (1081)
T KOG1538|consen  145 QYLALGMFNGTISIRNKNGEEK-------VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL  210 (1081)
T ss_pred             cEEEEeccCceEEeecCCCCcc-------eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe
Confidence            9999999999999986544321       22333346778999999998543    36888888888888875

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.72  E-value=4.7e-16  Score=117.48  Aligned_cols=150  Identities=16%  Similarity=0.242  Sum_probs=113.8

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC--C---ccceec----------CCCCCCCCCCcccCCCceeEEec
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR--P---NKIVNF----------GLPENNGNAGQCYNPAFVHAIAI   85 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~--~---~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~   85 (250)
                      ...|+|+.|-|.++.+++.+-.+|.+.++|..-..  .   -..++.          ......+.....+....|+..+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            46899999999887788888999999999864211  0   000000          00011122333444557888889


Q ss_pred             CCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCcc
Q 025649           86 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT  165 (250)
Q Consensus        86 ~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  165 (250)
                      +|      ||++||+.++||.+||||..+.+.                                        +..++..-
T Consensus       299 S~------DG~~LA~VSqDGfLRvF~fdt~eL----------------------------------------lg~mkSYF  332 (636)
T KOG2394|consen  299 SP------DGKYLATVSQDGFLRIFDFDTQEL----------------------------------------LGVMKSYF  332 (636)
T ss_pred             cC------CCceEEEEecCceEEEeeccHHHH----------------------------------------HHHHHhhc
Confidence            98      999999999999999999986442                                        22344455


Q ss_pred             ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649          166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT  228 (250)
Q Consensus       166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  228 (250)
                      +...|+.||   |||+||++|++|..|.||.+...         +++..-.+|.+.|..++|.
T Consensus       333 GGLLCvcWS---PDGKyIvtGGEDDLVtVwSf~er---------RVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  333 GGLLCVCWS---PDGKYIVTGGEDDLVTVWSFEER---------RVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             cceEEEEEc---CCccEEEecCCcceEEEEEeccc---------eEEEeccccccceeeEeec
Confidence            678999999   99999999999999999999997         7778889999999999987

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.71  E-value=4.7e-14  Score=107.41  Aligned_cols=219  Identities=10%  Similarity=0.010  Sum_probs=131.1

Q ss_pred             cEEEEcc-ccee--eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCC
Q 025649            2 WQIIDIR-QHCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         2 i~iwd~~-~~~~--~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      |.+|++. ++++  +....  ..+....++|+|+++.++++...++.|.+|++++. .........           ...
T Consensus        59 i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-----------~~~  125 (330)
T PRK11028         59 VLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-----------EGL  125 (330)
T ss_pred             EEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-----------cCC
Confidence            5678876 3432  22232  23356789999999944444445899999999643 221111100           012


Q ss_pred             CceeEEecCCCcccCCCCCEEEEE-eCCCeEEEEeCCCceeEe-----eccCCCCCCccceeecccceeEEEeee-----
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNIS-----RSKSTTKPLKGSQSTSKVNIRDAEMEI-----  146 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  146 (250)
                      ...++++++|      ++++++++ ..++.|.+||+.+...+.     ............+.|+|+|++++....     
T Consensus       126 ~~~~~~~~~p------~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v  199 (330)
T PRK11028        126 EGCHSANIDP------DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSV  199 (330)
T ss_pred             CcccEeEeCC------CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEE
Confidence            3467788898      88888554 567999999998632221     112222355678999999999875322     


Q ss_pred             --eeecc-CeeeeeeccccC------ccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecCCCcceecccccceeeeee
Q 025649          147 --LDQSG-GKRLHLDYSVGG------HTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNI  216 (250)
Q Consensus       147 --~~~~~-~~~~~~~~~~~~------h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~  216 (250)
                        ++... ....+.+..+..      +......+.++   |++++++++.. ++.|.+|++.......     .......
T Consensus       200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~---pdg~~lyv~~~~~~~I~v~~i~~~~~~~-----~~~~~~~  271 (330)
T PRK11028        200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT---PDGRHLYACDRTASLISVFSVSEDGSVL-----SFEGHQP  271 (330)
T ss_pred             EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC---CCCCEEEEecCCCCeEEEEEEeCCCCeE-----EEeEEEe
Confidence              23221 111222222221      11233468899   89999988864 7899999996542110     1111111


Q ss_pred             ccCCceeEEEecCCCCCeEEEeeC-CceEEEEeC
Q 025649          217 NLNKKVNWLCTTPTESENLVVCDT-SKVVKVYSI  249 (250)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~vw~~  249 (250)
                       -......+.++| +|++|++++. +++|.+|++
T Consensus       272 -~~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        272 -TETQPRGFNIDH-SGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             -ccccCCceEECC-CCCEEEEEEccCCcEEEEEE
Confidence             123456788987 8888887664 899999975

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.70  E-value=2.4e-14  Score=112.26  Aligned_cols=216  Identities=19%  Similarity=0.273  Sum_probs=156.9

Q ss_pred             CcEEEEcccce-eeeeeccCCC-CCeeeEEE-cCCCCeEEEEecC-CCeEEEEEccC-CCCccceecCCCCCCCCCCccc
Q 025649            1 MWQIIDIRQHC-LYKSLRAGHS-SICSSVQF-IPWKPWEVISGGL-DSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         1 ti~iwd~~~~~-~~~~l~~~h~-~~v~~l~~-~~~~~~~l~s~s~-dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      .+.+|+...+. ....+. ++. ..+..+.+ ++++..+++..+. |+.+.+||... ......+. .            
T Consensus        88 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~------------  153 (466)
T COG2319          88 TIKLWDLDNGEKLIKSLE-GLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE-G------------  153 (466)
T ss_pred             cEEEEEcCCCceeEEEEe-ccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe-c------------
Confidence            36889988776 667777 544 37888888 7777634444444 99999999987 45555444 2            


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeC-CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----  150 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  150 (250)
                      |...+..+.++|      ++..+++++. |+.+++|+...+........ +...+.+++++|++..++..+..+..    
T Consensus       154 ~~~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w  226 (466)
T COG2319         154 HSESVTSLAFSP------DGKLLASGSSLDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGLLIASGSSDGTIRLW  226 (466)
T ss_pred             CcccEEEEEECC------CCCEEEecCCCCCceEEEEcCCCceEEeecc-CCCceEEEEEcCCcceEEEEecCCCcEEEE
Confidence            578889999999      8888888885 99999999998666555554 45889999999999833322122221    


Q ss_pred             cCeeeeeec-cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649          151 GGKRLHLDY-SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       151 ~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                      +......+. .+.+|.... -..|+   +++.++++++.|+.+++||.+....        .+.....|...+.++.+.|
T Consensus       227 d~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~  294 (466)
T COG2319         227 DLSTGKLLRSTLSGHSDSV-VSSFS---PDGSLLASGSSDGTIRLWDLRSSSS--------LLRTLSGHSSSVLSVAFSP  294 (466)
T ss_pred             ECCCCcEEeeecCCCCcce-eEeEC---CCCCEEEEecCCCcEEEeeecCCCc--------EEEEEecCCccEEEEEECC
Confidence            212233344 577787764 33788   7878899999999999999998642        1222267888999999998


Q ss_pred             CCCCeEEEeeCCceEEEEeCC
Q 025649          230 TESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       230 ~~~~~l~s~~~d~~i~vw~~~  250 (250)
                       ++..+++++.|+.+++|+++
T Consensus       295 -~~~~~~~~~~d~~~~~~~~~  314 (466)
T COG2319         295 -DGKLLASGSSDGTVRLWDLE  314 (466)
T ss_pred             -CCCEEEEeeCCCcEEEEEcC
Confidence             77778888888889999863

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=1.3e-14  Score=103.07  Aligned_cols=175  Identities=13%  Similarity=0.194  Sum_probs=128.5

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc-CCCCccceecCCCCCCCCCCcccCCCce
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      |.|||-...+++.++.  ...+|.++.+.++   .|+..- ++.|.+|... +.+.++.+....           .|...
T Consensus        77 viIWDD~k~~~i~el~--f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~-----------NPkGl  139 (346)
T KOG2111|consen   77 VIIWDDLKERCIIELS--FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRS-----------NPKGL  139 (346)
T ss_pred             EEEEecccCcEEEEEE--eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeeccc-----------CCCce
Confidence            6799977888888887  8889999999987   455544 5689999987 456666665331           24444


Q ss_pred             eEEecCCCcccCCCCCEEEE-EeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeec
Q 025649           81 HAIAIPDADMLDKTNKICVV-AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY  159 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (250)
                      .++.-..      +..+||. |-.-|.|++-|+...+.-                                      ...
T Consensus       140 C~~~~~~------~k~~LafPg~k~GqvQi~dL~~~~~~--------------------------------------~p~  175 (346)
T KOG2111|consen  140 CSLCPTS------NKSLLAFPGFKTGQVQIVDLASTKPN--------------------------------------APS  175 (346)
T ss_pred             EeecCCC------CceEEEcCCCccceEEEEEhhhcCcC--------------------------------------Cce
Confidence            4443332      3334433 345688999888753310                                      113


Q ss_pred             cccCccccEEEEEeecCCCCCcEEEEeeCCCe-EEEEecCCCcceecccccceeeeee--ccCCceeEEEecCCCCCeEE
Q 025649          160 SVGGHTAAASCVAFSMFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       160 ~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~  236 (250)
                      .+.+|...|.|++.+   -+|..+||+|..|+ |||||..++...         ..+.  .....|++|+|+| +..+|+
T Consensus       176 ~I~AH~s~Iacv~Ln---~~Gt~vATaStkGTLIRIFdt~~g~~l---------~E~RRG~d~A~iy~iaFSp-~~s~La  242 (346)
T KOG2111|consen  176 IINAHDSDIACVALN---LQGTLVATASTKGTLIRIFDTEDGTLL---------QELRRGVDRADIYCIAFSP-NSSWLA  242 (346)
T ss_pred             EEEcccCceeEEEEc---CCccEEEEeccCcEEEEEEEcCCCcEe---------eeeecCCchheEEEEEeCC-CccEEE
Confidence            567899999999999   89999999999885 899999999543         3332  2335699999998 899999


Q ss_pred             EeeCCceEEEEeCC
Q 025649          237 VCDTSKVVKVYSIS  250 (250)
Q Consensus       237 s~~~d~~i~vw~~~  250 (250)
                      ++|.-|++.|+.++
T Consensus       243 vsSdKgTlHiF~l~  256 (346)
T KOG2111|consen  243 VSSDKGTLHIFSLR  256 (346)
T ss_pred             EEcCCCeEEEEEee
Confidence            99999999999863

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.70  E-value=8.4e-15  Score=102.05  Aligned_cols=149  Identities=13%  Similarity=0.271  Sum_probs=103.0

Q ss_pred             eeEEEcCCCCeEEEEecC---------CCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649           25 SSVQFIPWKPWEVISGGL---------DSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT   94 (250)
Q Consensus        25 ~~l~~~~~~~~~l~s~s~---------dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (250)
                      -.+.|+|+|+.+++....         -|...+|.++. +.....+...            ....|.+++|+|      +
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~------------~~~~I~~~~WsP------~   70 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK------------KEGPIHDVAWSP------N   70 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc------------CCCceEEEEECc------C
Confidence            368899999855555441         24466666632 3344444433            234699999999      8


Q ss_pred             CCEEEEE--eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEE
Q 025649           95 NKICVVA--KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA  172 (250)
Q Consensus        95 ~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  172 (250)
                      ++.+++.  ..++.|.+||++. +                                        .+..+.  ...+..+.
T Consensus        71 g~~favi~g~~~~~v~lyd~~~-~----------------------------------------~i~~~~--~~~~n~i~  107 (194)
T PF08662_consen   71 GNEFAVIYGSMPAKVTLYDVKG-K----------------------------------------KIFSFG--TQPRNTIS  107 (194)
T ss_pred             CCEEEEEEccCCcccEEEcCcc-c----------------------------------------EeEeec--CCCceEEE
Confidence            8887655  3567999999962 1                                        122332  34567899


Q ss_pred             eecCCCCCcEEEEeeC---CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC------Cce
Q 025649          173 FSMFGERGKYLISGGN---DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT------SKV  243 (250)
Q Consensus       173 ~~p~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------d~~  243 (250)
                      |+   |+|++|++++.   .|.|.+||.++.         +.+.. ..|. .+..++|+| ||++|+++..      |+.
T Consensus       108 ws---P~G~~l~~~g~~n~~G~l~~wd~~~~---------~~i~~-~~~~-~~t~~~WsP-dGr~~~ta~t~~r~~~dng  172 (194)
T PF08662_consen  108 WS---PDGRFLVLAGFGNLNGDLEFWDVRKK---------KKIST-FEHS-DATDVEWSP-DGRYLATATTSPRLRVDNG  172 (194)
T ss_pred             EC---CCCCEEEEEEccCCCcEEEEEECCCC---------EEeec-cccC-cEEEEEEcC-CCCEEEEEEeccceecccc
Confidence            99   89999999864   467999999976         33322 2333 467899998 9999998764      788


Q ss_pred             EEEEeC
Q 025649          244 VKVYSI  249 (250)
Q Consensus       244 i~vw~~  249 (250)
                      ++||++
T Consensus       173 ~~Iw~~  178 (194)
T PF08662_consen  173 FKIWSF  178 (194)
T ss_pred             EEEEEe
Confidence            999986

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=3.5e-15  Score=108.57  Aligned_cols=187  Identities=13%  Similarity=0.151  Sum_probs=138.4

Q ss_pred             cEEEEcccce----eeeeeccCCCCCeeeEEEcCCCCeEEEEecCC--CeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649            2 WQIIDIRQHC----LYKSLRAGHSSICSSVQFIPWKPWEVISGGLD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         2 i~iwd~~~~~----~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      +++|..+.+.    .+..+.  -...+..+.-++..+.++++|+..  ..+++||++..+.+..-+.-    .....-..
T Consensus       127 l~~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv----pnD~L~Lr  200 (412)
T KOG3881|consen  127 LQVRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV----PNDRLGLR  200 (412)
T ss_pred             EEEEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC----CCccccce
Confidence            5667766332    233444  225667777778777677779999  89999999887544443311    11122233


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeee
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL  155 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (250)
                      -|-+++++.|-|    +.....|+++..-+.+++||.+.++.                                      
T Consensus       201 VPvW~tdi~Fl~----g~~~~~fat~T~~hqvR~YDt~~qRR--------------------------------------  238 (412)
T KOG3881|consen  201 VPVWITDIRFLE----GSPNYKFATITRYHQVRLYDTRHQRR--------------------------------------  238 (412)
T ss_pred             eeeeeccceecC----CCCCceEEEEecceeEEEecCcccCc--------------------------------------
Confidence            456778888887    11278999999999999999996542                                      


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee-eeccCCceeEEEecCCCCCe
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~  234 (250)
                       ++..+.--..+++++...   |.++++++|..-|.+..||++.+         .++.. +.+..+.|.++..+| .+++
T Consensus       239 -PV~~fd~~E~~is~~~l~---p~gn~Iy~gn~~g~l~~FD~r~~---------kl~g~~~kg~tGsirsih~hp-~~~~  304 (412)
T KOG3881|consen  239 -PVAQFDFLENPISSTGLT---PSGNFIYTGNTKGQLAKFDLRGG---------KLLGCGLKGITGSIRSIHCHP-THPV  304 (412)
T ss_pred             -ceeEeccccCcceeeeec---CCCcEEEEecccchhheecccCc---------eeeccccCCccCCcceEEEcC-CCce
Confidence             223444446789999998   89999999999999999999998         44444 788899999999998 7789


Q ss_pred             EEEeeCCceEEEEeCC
Q 025649          235 LVVCDTSKVVKVYSIS  250 (250)
Q Consensus       235 l~s~~~d~~i~vw~~~  250 (250)
                      ++++|-|+.++|+|+.
T Consensus       305 las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  305 LASCGLDRYVRIHDIK  320 (412)
T ss_pred             EEeeccceeEEEeecc
Confidence            9999999999999973

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=6.8e-15  Score=116.94  Aligned_cols=226  Identities=15%  Similarity=0.127  Sum_probs=154.9

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCC--eEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCC-------
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP--WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNA-------   71 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-------   71 (250)
                      +|+||...|++++..+. +|..+++.+.+.|...  .++.+++.||.|++||...+..++++..+.+......       
T Consensus        38 ~V~VyS~~Tg~~i~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~  116 (792)
T KOG1963|consen   38 FVKVYSTATGECITSLE-DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADI  116 (792)
T ss_pred             EEEEEecchHhhhhhcc-cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCc
Confidence            47899999999999999 9999999999998775  4788999999999999999888877764421100000       


Q ss_pred             -CcccCCCc-------------------------------------eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCC
Q 025649           72 -GQCYNPAF-------------------------------------VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE  113 (250)
Q Consensus        72 -~~~~~~~~-------------------------------------v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~  113 (250)
                       ...++...                                     -..+..++      .+. +.....+..+.+|...
T Consensus       117 s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~------~ge-~~~i~~~~~~~~~~v~  189 (792)
T KOG1963|consen  117 SANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN------SGE-FKGIVHMCKIHIYFVP  189 (792)
T ss_pred             cceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC------Cce-EEEEEEeeeEEEEEec
Confidence             00000000                                     01111111      222 2233345567788877


Q ss_pred             CceeE---eeccCCCCCCccceeecccceeEEEeeeeeeccC--------eeeeeeccccCccccEEEEEeecCCCCCcE
Q 025649          114 SELNI---SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG--------KRLHLDYSVGGHTAAASCVAFSMFGERGKY  182 (250)
Q Consensus       114 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  182 (250)
                      .+...   ......+...+.+.+++|++++++ ++..++...        ........+.-|...|.+++|+   ++|.+
T Consensus       190 ~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~A-a~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS---~~G~~  265 (792)
T KOG1963|consen  190 KHTKHTSSRDITVHHTFNITCVALSPNERYLA-AGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS---SDGAY  265 (792)
T ss_pred             ccceeeccchhhhhhcccceeEEeccccceEE-EeccCCcEEEEeccccccccccceEEEecccccceeEEe---cCCce
Confidence            64411   112223334578899999999999 444444321        1122234566788999999999   99999


Q ss_pred             EEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          183 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       183 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      |++|+.+|.+.+|.+.+++.          ..+.-..++|..+.++| |+.+.+....|+.|.+-.+
T Consensus       266 LlSGG~E~VLv~Wq~~T~~k----------qfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  266 LLSGGREGVLVLWQLETGKK----------QFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             EeecccceEEEEEeecCCCc----------ccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEec
Confidence            99999999999999999742          23344567899999997 8888888888999988654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.69  E-value=7e-14  Score=106.48  Aligned_cols=219  Identities=13%  Similarity=0.135  Sum_probs=132.3

Q ss_pred             CcEEEEccc-ce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccC
Q 025649            1 MWQIIDIRQ-HC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         1 ti~iwd~~~-~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      +|++||+.+ ++  .+..+.  +.+....++++|+++.+++++..++.|.+|++.. ++. ......           ..
T Consensus        13 ~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~-----------~~   78 (330)
T PRK11028         13 QIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAES-----------PL   78 (330)
T ss_pred             CEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeee-----------cC
Confidence            488999964 33  455565  4466789999999993334455688999999963 332 111100           01


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCC-ceeEeecc-CCCCCCccceeecccceeEEEee-------e
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES-ELNISRSK-STTKPLKGSQSTSKVNIRDAEME-------I  146 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~  146 (250)
                      ......++++|      +++++++++ .++.|.+|++.+ +....... .........++++|+|++++...       .
T Consensus        79 ~~~p~~i~~~~------~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v  152 (330)
T PRK11028         79 PGSPTHISTDH------QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRL  152 (330)
T ss_pred             CCCceEEEECC------CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence            22356788998      899888776 489999999974 22111111 11123466788999999887422       2


Q ss_pred             eeeccCeeeee----eccccCccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecCCCcceecccccceeeeeec----
Q 025649          147 LDQSGGKRLHL----DYSVGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNIN----  217 (250)
Q Consensus       147 ~~~~~~~~~~~----~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----  217 (250)
                      ++.........    ...... ......++|+   |+|++++++.. ++.|.+||+.......     +.......    
T Consensus       153 ~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~---pdg~~lyv~~~~~~~v~v~~~~~~~~~~-----~~~~~~~~~p~~  223 (330)
T PRK11028        153 FTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFH---PNQQYAYCVNELNSSVDVWQLKDPHGEI-----ECVQTLDMMPAD  223 (330)
T ss_pred             EEECCCCcccccCCCceecCC-CCCCceEEEC---CCCCEEEEEecCCCEEEEEEEeCCCCCE-----EEEEEEecCCCc
Confidence            33221111110    001111 2335688999   89999988876 8999999997421100     11111111    


Q ss_pred             --cCCceeEEEecCCCCCeEEEee-CCceEEEEeC
Q 025649          218 --LNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI  249 (250)
Q Consensus       218 --~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw~~  249 (250)
                        +......+.++| ++++++++. .++.|.+|++
T Consensus       224 ~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        224 FSDTRWAADIHITP-DGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             CCCCccceeEEECC-CCCEEEEecCCCCeEEEEEE
Confidence              112234577887 888888875 4789999986

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.68  E-value=1.1e-14  Score=114.62  Aligned_cols=232  Identities=13%  Similarity=0.052  Sum_probs=152.2

Q ss_pred             cEEEEccccee--eee---eccCCCCCeeeEEEcCCCC-eEEEEecCCCeEEEEEccCCCC-ccceecCCCCCCCCCCcc
Q 025649            2 WQIIDIRQHCL--YKS---LRAGHSSICSSVQFIPWKP-WEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQC   74 (250)
Q Consensus         2 i~iwd~~~~~~--~~~---l~~~h~~~v~~l~~~~~~~-~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~   74 (250)
                      |-+||+..+..  ...   ....|..++..+.|..+-. .-|++++.||.|..|+++.-.. ...........  .....
T Consensus       267 V~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~--~~~~~  344 (555)
T KOG1587|consen  267 VVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH--KGQQS  344 (555)
T ss_pred             EEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc--ccccc
Confidence            67999986654  222   2236899999999976443 2489999999999998875433 22221110000  00011


Q ss_pred             cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCC---ce----eEeeccCCCCCCccceeecccceeEEE-eee
Q 025649           75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES---EL----NISRSKSTTKPLKGSQSTSKVNIRDAE-MEI  146 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  146 (250)
                      .....++++.|.+     .+...+++|+.+|.|.--+-..   ..    ........+...+..+.++|-+..++. ++.
T Consensus       345 ~~~~~~t~~~F~~-----~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gD  419 (555)
T KOG1587|consen  345 SKAVGATSLKFEP-----TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGD  419 (555)
T ss_pred             ccccceeeEeecc-----CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeecc
Confidence            1234678899988     5788999999999988733332   22    111122334578899999998766553 444


Q ss_pred             eeecc--Ce-eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee
Q 025649          147 LDQSG--GK-RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN  223 (250)
Q Consensus       147 ~~~~~--~~-~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (250)
                      |....  .. ...++..+..+...+++++|||..  -..|+++..||.|.+||+.....       .+.....-+....+
T Consensus       420 W~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr--pavF~~~d~~G~l~iWDLl~~~~-------~Pv~s~~~~~~~l~  490 (555)
T KOG1587|consen  420 WTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR--PAVFATVDGDGNLDIWDLLQDDE-------EPVLSQKVCSPALT  490 (555)
T ss_pred             ceeEeccccCCCCcchhhhhccceeeeeEEcCcC--ceEEEEEcCCCceehhhhhcccc-------CCcccccccccccc
Confidence            43332  22 445666777788889999999633  35888999999999999987543       23333333344455


Q ss_pred             EEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          224 WLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       224 ~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .+.|++ .|+.|+.|+..|.+.+|+++
T Consensus       491 ~~~~s~-~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  491 RVRWSP-NGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             eeecCC-CCcEEEEecCCCcEEEEEcC
Confidence            555654 79999999999999999973

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.68  E-value=4.5e-16  Score=115.60  Aligned_cols=168  Identities=17%  Similarity=0.255  Sum_probs=132.2

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      +.|||- .|..+.+++  ....|..+.|.|..= +|++++..|.++.-|+.+|+.+..+..+             ...+.
T Consensus       193 ~yvYD~-~GtElHClk--~~~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~GklVa~~~t~-------------~G~~~  255 (545)
T KOG1272|consen  193 VYVYDN-NGTELHCLK--RHIRVARLEFLPYHF-LLVAASEAGFLKYQDVSTGKLVASIRTG-------------AGRTD  255 (545)
T ss_pred             EEEecC-CCcEEeehh--hcCchhhhcccchhh-eeeecccCCceEEEeechhhhhHHHHcc-------------CCccc
Confidence            467773 566677887  445789999999886 8999999999999999999999999866             46778


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccc
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV  161 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (250)
                      .|..+|      -+..+-+|..+|+|.+|......                                        ++..+
T Consensus       256 vm~qNP------~NaVih~GhsnGtVSlWSP~ske----------------------------------------PLvKi  289 (545)
T KOG1272|consen  256 VMKQNP------YNAVIHLGHSNGTVSLWSPNSKE----------------------------------------PLVKI  289 (545)
T ss_pred             hhhcCC------ccceEEEcCCCceEEecCCCCcc----------------------------------------hHHHH
Confidence            888888      88899999999999999987533                                        44567


Q ss_pred             cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC
Q 025649          162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS  241 (250)
Q Consensus       162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  241 (250)
                      ..|.++|.++++.   ++|+|++|.+.|+.++|||++....+         ..... .-+...++++. .|  +++.+..
T Consensus       290 LcH~g~V~siAv~---~~G~YMaTtG~Dr~~kIWDlR~~~ql---------~t~~t-p~~a~~ls~Sq-kg--lLA~~~G  353 (545)
T KOG1272|consen  290 LCHRGPVSSIAVD---RGGRYMATTGLDRKVKIWDLRNFYQL---------HTYRT-PHPASNLSLSQ-KG--LLALSYG  353 (545)
T ss_pred             HhcCCCcceEEEC---CCCcEEeecccccceeEeeecccccc---------ceeec-CCCcccccccc-cc--ceeeecC
Confidence            7899999999999   89999999999999999999997432         12221 22445566653 33  4555556


Q ss_pred             ceEEEEe
Q 025649          242 KVVKVYS  248 (250)
Q Consensus       242 ~~i~vw~  248 (250)
                      ..|.+|.
T Consensus       354 ~~v~iw~  360 (545)
T KOG1272|consen  354 DHVQIWK  360 (545)
T ss_pred             Ceeeeeh
Confidence            6788884

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.5e-16  Score=118.72  Aligned_cols=224  Identities=19%  Similarity=0.195  Sum_probs=142.9

Q ss_pred             eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCC------------------------
Q 025649           11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE------------------------   66 (250)
Q Consensus        11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~------------------------   66 (250)
                      .+..+|. .|.+.|..+.|+..|. .|++||.|..|.+||...++.+..+..+...                        
T Consensus       133 ~l~~kL~-~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  133 RLQKKLN-KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             hhhhccc-CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            3456777 9999999999999999 8999999999999999876655444322100                        


Q ss_pred             -----------CCCCCCcccCCCceeEEecCCC--------------------------------------------ccc
Q 025649           67 -----------NNGNAGQCYNPAFVHAIAIPDA--------------------------------------------DML   91 (250)
Q Consensus        67 -----------~~~~~~~~~~~~~v~~~~~~~~--------------------------------------------~~~   91 (250)
                                 ......+..|...|+-++.-|.                                            ...
T Consensus       211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence                       0001112223444444444441                                            011


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCceeE-----------eeccCCCCCCccceeecccceeEE-Eeeeeeec-------cC
Q 025649           92 DKTNKICVVAKGDGVVDVINIESELNI-----------SRSKSTTKPLKGSQSTSKVNIRDA-EMEILDQS-------GG  152 (250)
Q Consensus        92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~  152 (250)
                      +.+..++++++.|..+++||.+.-...           ..+.......|++++|+.++..++ +..-.++.       .+
T Consensus       291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G  370 (559)
T KOG1334|consen  291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG  370 (559)
T ss_pred             CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence            123346666666666666666541111           111112335688999996654444 21111111       01


Q ss_pred             -------eeeeee-ccccCccc--cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCce
Q 025649          153 -------KRLHLD-YSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV  222 (250)
Q Consensus       153 -------~~~~~~-~~~~~h~~--~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  222 (250)
                             .....+ +.++||.+  .|.++.|-  .|..+|+++||.-|.|.||+-.++         +++..+.+-...|
T Consensus       371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFf--GPrsEyVvSGSDCGhIFiW~K~t~---------eii~~MegDr~VV  439 (559)
T KOG1334|consen  371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFF--GPRSEYVVSGSDCGHIFIWDKKTG---------EIIRFMEGDRHVV  439 (559)
T ss_pred             CCCCCCcchhhccchhhcccccccccceeeec--cCccceEEecCccceEEEEecchh---------HHHHHhhcccceE
Confidence                   001222 33788865  46677664  488999999999999999999998         6777777776799


Q ss_pred             eEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          223 NWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       223 ~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      ++|.-+|..+ +||+++-|.-|+||-
T Consensus       440 NCLEpHP~~P-vLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  440 NCLEPHPHLP-VLASSGIDHDVKIWT  464 (559)
T ss_pred             eccCCCCCCc-hhhccCCccceeeec
Confidence            9999888554 799999999999995

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.67  E-value=1.1e-14  Score=119.88  Aligned_cols=216  Identities=13%  Similarity=0.105  Sum_probs=136.4

Q ss_pred             cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc-cceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649            9 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN-KIVNFGLPENNGNAGQCYNPAFVHAIAIPD   87 (250)
Q Consensus         9 ~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   87 (250)
                      .|..+..+. .|...|..++.++....+|+|||.||+|++||.+.-..- .+.+       ...........+..+...+
T Consensus      1037 ~G~lVAhL~-Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~r-------S~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1037 RGILVAHLH-EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSAR-------SELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred             cceEeehhh-hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceee-------eeEEEeccCCceEEEEecc
Confidence            578888998 999999999998776339999999999999998742211 1111       0001111245678888887


Q ss_pred             CcccCCCCCEEEEEeCCCeEEEEeCCCcee-------EeeccCCC-CCCccceeecccc-e-eEEE------eeeeeecc
Q 025649           88 ADMLDKTNKICVVAKGDGVVDVINIESELN-------ISRSKSTT-KPLKGSQSTSKVN-I-RDAE------MEILDQSG  151 (250)
Q Consensus        88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~-~-~~~~------~~~~~~~~  151 (250)
                            .++.+|+++.||.|++.++.....       ........ +..+..-++.... . .++.      +-.||...
T Consensus      1109 ------~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1109 ------NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred             ------CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence                  899999999999999999876211       11111111 1222333333322 2 2221      22344333


Q ss_pred             CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649          152 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE  231 (250)
Q Consensus       152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  231 (250)
                      ......+ +..-..+.|++++.+   |.+++++.|...|.+.+||++-+.        .......++..++..+..+|..
T Consensus      1183 ~~~~w~l-k~~~~hG~vTSi~id---p~~~WlviGts~G~l~lWDLRF~~--------~i~sw~~P~~~~i~~v~~~~~~ 1250 (1431)
T KOG1240|consen 1183 RHDAWRL-KNQLRHGLVTSIVID---PWCNWLVIGTSRGQLVLWDLRFRV--------PILSWEHPARAPIRHVWLCPTY 1250 (1431)
T ss_pred             hhhHHhh-hcCccccceeEEEec---CCceEEEEecCCceEEEEEeecCc--------eeecccCcccCCcceEEeeccC
Confidence            2222211 122334779999999   889999999999999999999863        2222233455677777777643


Q ss_pred             C--CeEEEee--CCceEEEEeCC
Q 025649          232 S--ENLVVCD--TSKVVKVYSIS  250 (250)
Q Consensus       232 ~--~~l~s~~--~d~~i~vw~~~  250 (250)
                      +  ...++++  ..+.|.+|++.
T Consensus      1251 ~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1251 PQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred             CCCceEEEecccCCCceeeeecc
Confidence            3  4555544  57889999974

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=3.3e-13  Score=97.81  Aligned_cols=173  Identities=10%  Similarity=0.066  Sum_probs=126.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      +++.+++.+..++.+.  ....|.++.++.+   .|+.+-.+ .|.|||+++.+.++++..-          .-++..+.
T Consensus        70 Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~t~----------~~n~~gl~  133 (391)
T KOG2110|consen   70 LKVVHFKKKTTICEIF--FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIETT----------PPNPKGLC  133 (391)
T ss_pred             EEEEEcccCceEEEEe--cCCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhhcc----------CCCccceE
Confidence            4667777777777776  6678899998876   46666554 4999999999999888732          01345566


Q ss_pred             EEecCCCcccCCCCCEEEEEe--CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc-----Cee
Q 025649           82 AIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG-----GKR  154 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  154 (250)
                      ++.+++      .+.+++--+  ..|.|.+||+.+-+....+. .++..+.+++|+++|.++++ ++..++.     ...
T Consensus       134 AlS~n~------~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llAT-ASeKGTVIRVf~v~~  205 (391)
T KOG2110|consen  134 ALSPNN------ANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLAT-ASEKGTVIRVFSVPE  205 (391)
T ss_pred             eeccCC------CCceEEecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEE-eccCceEEEEEEcCC
Confidence            777766      666776543  46899999999988887777 55699999999999999995 2222221     233


Q ss_pred             eeeeccccCc--cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649          155 LHLDYSVGGH--TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  201 (250)
Q Consensus       155 ~~~~~~~~~h--~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~  201 (250)
                      .+.+.+|+..  ...|.+++|+   |++++|++.|..++|.+|.+....
T Consensus       206 G~kl~eFRRG~~~~~IySL~Fs---~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  206 GQKLYEFRRGTYPVSIYSLSFS---PDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             ccEeeeeeCCceeeEEEEEEEC---CCCCeEEEecCCCeEEEEEecccc
Confidence            4444455432  3468899999   899999999999999999887643

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.66  E-value=2.3e-16  Score=117.07  Aligned_cols=190  Identities=12%  Similarity=0.099  Sum_probs=151.8

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  102 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  102 (250)
                      .-..+.++.+|. +|+.|+..|.|-.+|..+++....+...              ..|..+.|--      +.+++|++ 
T Consensus       131 GPY~~~ytrnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~v~--------------Etv~Dv~~LH------neq~~AVA-  188 (545)
T KOG1272|consen  131 GPYHLDYTRNGR-HLLLGGRKGHLAAFDWVTKKLHFEINVM--------------ETVRDVTFLH------NEQFFAVA-  188 (545)
T ss_pred             CCeeeeecCCcc-EEEecCCccceeeeecccceeeeeeehh--------------hhhhhhhhhc------chHHHHhh-
Confidence            345889999999 8999999999999999999988887743              6788888874      55556555 


Q ss_pred             CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe---eeeeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649          103 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER  179 (250)
Q Consensus       103 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  179 (250)
                      +.+.+.+||-. |..+..+...  ..+..+.|-|-.-+|+++   |.....+....+.+..+....+.+..+.-+   |-
T Consensus       189 QK~y~yvYD~~-GtElHClk~~--~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN---P~  262 (545)
T KOG1272|consen  189 QKKYVYVYDNN-GTELHCLKRH--IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN---PY  262 (545)
T ss_pred             hhceEEEecCC-CcEEeehhhc--CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC---Cc
Confidence            67889999976 4444444444  678888999988777752   223333455566677777777888888888   66


Q ss_pred             CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          180 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       180 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +-.+-+|...|+|.+|.....         +++..+..|.++|.++++.+ +|++++|.+.|..++|||++
T Consensus       263 NaVih~GhsnGtVSlWSP~sk---------ePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR  323 (545)
T KOG1272|consen  263 NAVIHLGHSNGTVSLWSPNSK---------EPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLR  323 (545)
T ss_pred             cceEEEcCCCceEEecCCCCc---------chHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeec
Confidence            678889999999999999987         77788899999999999997 99999999999999999985

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.7e-15  Score=111.14  Aligned_cols=174  Identities=17%  Similarity=0.117  Sum_probs=126.0

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcccee-cCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN-FGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   79 (250)
                      ++|||++.....+.... .|...|.+|.|+|||+ +|++-+.| ..+||+.+++..+.... .+            .+..
T Consensus       167 ~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~a~~t~~~------------k~~~  231 (398)
T KOG0771|consen  167 TLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAALARKTPFS------------KDEM  231 (398)
T ss_pred             eEEEEecCcchhhhhhH-hhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchhhhcCCcc------------cchh
Confidence            48999988888888888 8999999999999999 89999999 99999999996665554 12            2233


Q ss_pred             eeEEecCCCcccCCCC-----CEEEEEeCCCeEEEEeCCCcee----EeeccCCCCCCccceeecccceeEEEeeeeeec
Q 025649           80 VHAIAIPDADMLDKTN-----KICVVAKGDGVVDVINIESELN----ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS  150 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~-----~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (250)
                      ...+.|+.      ++     ..++....-+.|+.||+.....    ...........+.+++.+++|++++ .|..++.
T Consensus       232 ~~~cRF~~------d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A-lGT~dGs  304 (398)
T KOG0771|consen  232 FSSCRFSV------DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA-LGTMDGS  304 (398)
T ss_pred             hhhceecc------cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE-EeccCCc
Confidence            44556664      33     2223334456677776654222    2222222336899999999999999 6665554


Q ss_pred             c----Ceeeeeec-cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC
Q 025649          151 G----GKRLHLDY-SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  199 (250)
Q Consensus       151 ~----~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~  199 (250)
                      +    ...++.++ .-+.|...|+.++|+   |+.+++++-+.|..+.+..+.-
T Consensus       305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~---Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFS---PDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEEEeceeeeeEeehhhheeeeeeEEEc---CCcCcccccccCCceeEEEEee
Confidence            3    33444333 335799999999999   8999999999999999987765

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=2.6e-15  Score=113.93  Aligned_cols=189  Identities=18%  Similarity=0.302  Sum_probs=129.9

Q ss_pred             eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649           14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK   93 (250)
Q Consensus        14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (250)
                      .++. .|.+.|..++|.|..+ .|++|+.||++++|+++....-     ......+...+..|..+|.|+++.+      
T Consensus       288 ~tl~-s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s-----~~~~~epi~tfraH~gPVl~v~v~~------  354 (577)
T KOG0642|consen  288 FTLR-SHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKS-----AEKDVEPILTFRAHEGPVLCVVVPS------  354 (577)
T ss_pred             eeee-cchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCc-----cccceeeeEEEecccCceEEEEecC------
Confidence            3666 8999999999999998 8999999999999999431100     0000111223334789999999998      


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEe
Q 025649           94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF  173 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  173 (250)
                      ++.++++|+.||+|+.|++....-.....                         +.     ......+.||.+.|+.+++
T Consensus       355 n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~-------------------------dp-----~vl~~~l~Ghtdavw~l~~  404 (577)
T KOG0642|consen  355 NGEHCYSGGIDGTIRCWNLPPNQDPDDSY-------------------------DP-----SVLSGTLLGHTDAVWLLAL  404 (577)
T ss_pred             CceEEEeeccCceeeeeccCCCCCccccc-------------------------Cc-----chhccceeccccceeeeee
Confidence            99999999999999999987322111110                         00     1123467899999999999


Q ss_pred             ecCCCCCcEEEEeeCCCeEEEEecCCCcce--ec-----------------------------------ccccceeeeee
Q 025649          174 SMFGERGKYLISGGNDKLVKVWDCSRFQGV--QT-----------------------------------SINNDLLIKNI  216 (250)
Q Consensus       174 ~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~-----------------------------------~~~~~~~~~~~  216 (250)
                      +   +....|++++.||++++|+.......  ..                                   ......+....
T Consensus       405 s---~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~  481 (577)
T KOG0642|consen  405 S---STKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS  481 (577)
T ss_pred             c---ccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeecccc
Confidence            9   77788999999999999988765441  00                                   00000000000


Q ss_pred             c-----cCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          217 N-----LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       217 ~-----~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .     -...++.+.++| ...+.+++-.|+.|+++|.
T Consensus       482 ~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn  518 (577)
T KOG0642|consen  482 ASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDN  518 (577)
T ss_pred             CCCcccccCccceEEecC-CCCeeEecccCCceecccc
Confidence            0     112356677777 5678899999999999874

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.65  E-value=8.9e-17  Score=127.16  Aligned_cols=121  Identities=24%  Similarity=0.361  Sum_probs=106.7

Q ss_pred             ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649           10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD   89 (250)
Q Consensus        10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (250)
                      .+.++.|. +|.++|.|..|...|. ++++|+.|..|+||...++.++.... +            |...|+.++.+.  
T Consensus       180 mk~ikrLl-gH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs~r-G------------hs~ditdlavs~--  242 (1113)
T KOG0644|consen  180 MKNIKRLL-GHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLASCR-G------------HSGDITDLAVSS--  242 (1113)
T ss_pred             HHHHHHHH-hhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhccCC-C------------Cccccchhccch--
Confidence            34566778 9999999999999999 89999999999999999999988887 4            688899999997  


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEE
Q 025649           90 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS  169 (250)
Q Consensus        90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  169 (250)
                          ++..+++++.|..|++|.+..+.                                        ++..+.+|.+.|+
T Consensus       243 ----~n~~iaaaS~D~vIrvWrl~~~~----------------------------------------pvsvLrghtgavt  278 (1113)
T KOG0644|consen  243 ----NNTMIAAASNDKVIRVWRLPDGA----------------------------------------PVSVLRGHTGAVT  278 (1113)
T ss_pred             ----hhhhhhhcccCceEEEEecCCCc----------------------------------------hHHHHhcccccee
Confidence                88899999999999999998754                                        4567899999999


Q ss_pred             EEEeecCCCCCcEEEEeeCCCeEEEEecC
Q 025649          170 CVAFSMFGERGKYLISGGNDKLVKVWDCS  198 (250)
Q Consensus       170 ~~~~~p~~~~~~~l~s~~~d~~i~iwd~~  198 (250)
                      +++|+|   -.    +.+.||++++||.+
T Consensus       279 aiafsP---~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  279 AIAFSP---RA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             eeccCc---cc----cCCCCCceEecccc
Confidence            999994   22    67789999999998

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=7.5e-14  Score=109.85  Aligned_cols=207  Identities=10%  Similarity=-0.013  Sum_probs=126.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC---CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |.+||.. +...+.+. .+...+.+.+|+|+|+ .|+..+.   +..|.+||+.+++......              .+.
T Consensus       186 l~i~D~~-g~~~~~lt-~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~~--------------~~g  248 (433)
T PRK04922        186 LQVADSD-GYNPQTIL-RSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVAS--------------FRG  248 (433)
T ss_pred             EEEECCC-CCCceEee-cCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEecc--------------CCC
Confidence            6788875 44445666 6778899999999999 6776653   3479999998776432221              123


Q ss_pred             ceeEEecCCCcccCCCCCEEE-EEeCCC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----cc
Q 025649           79 FVHAIAIPDADMLDKTNKICV-VAKGDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SG  151 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~-~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  151 (250)
                      ...+..|+|      +|+.|+ +.+.+|  .|.+||+.+++.......  .......+|+|||+.++.......    ..
T Consensus       249 ~~~~~~~Sp------DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~--~~~~~~~~~spDG~~l~f~sd~~g~~~iy~  320 (433)
T PRK04922        249 INGAPSFSP------DGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNH--FGIDTEPTWAPDGKSIYFTSDRGGRPQIYR  320 (433)
T ss_pred             CccCceECC------CCCEEEEEEeCCCCceEEEEECCCCCeEECccC--CCCccceEECCCCCEEEEEECCCCCceEEE
Confidence            345678998      898775 445555  699999988765432221  234567899999998874321111    10


Q ss_pred             --CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC---eEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649          152 --GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC  226 (250)
Q Consensus       152 --~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (250)
                        ....+ ...+..+.......+|+   |+|++++..+.++   .|.+||+.++.         .. .+ .+........
T Consensus       321 ~dl~~g~-~~~lt~~g~~~~~~~~S---pDG~~Ia~~~~~~~~~~I~v~d~~~g~---------~~-~L-t~~~~~~~p~  385 (433)
T PRK04922        321 VAASGGS-AERLTFQGNYNARASVS---PDGKKIAMVHGSGGQYRIAVMDLSTGS---------VR-TL-TPGSLDESPS  385 (433)
T ss_pred             EECCCCC-eEEeecCCCCccCEEEC---CCCCEEEEEECCCCceeEEEEECCCCC---------eE-EC-CCCCCCCCce
Confidence              00111 11111122334467899   8999988765433   69999998763         21 11 1222344567


Q ss_pred             ecCCCCCeEEEeeCC---ceEEEEeC
Q 025649          227 TTPTESENLVVCDTS---KVVKVYSI  249 (250)
Q Consensus       227 ~~~~~~~~l~s~~~d---~~i~vw~~  249 (250)
                      |+| ||+.++..+.+   +.|.++++
T Consensus       386 ~sp-dG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        386 FAP-NGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             ECC-CCCEEEEEEecCCceEEEEEEC
Confidence            887 88877665542   34666654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.63  E-value=1.9e-15  Score=104.76  Aligned_cols=134  Identities=21%  Similarity=0.209  Sum_probs=106.3

Q ss_pred             cEEEEcccc----------eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC--CCccceecCCCCCCC
Q 025649            2 WQIIDIRQH----------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNG   69 (250)
Q Consensus         2 i~iwd~~~~----------~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~   69 (250)
                      |.+||+.++          +...... .|..+|.++.|.+.-. .=++|+.+..+..|+++..  .+.....        
T Consensus       177 vv~wd~S~~~~~~~~~~~~kv~~~~a-sh~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gslq~~~e--------  246 (323)
T KOG0322|consen  177 VVIWDLSTGDKIIQLPQSSKVESPNA-SHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSLQIRKE--------  246 (323)
T ss_pred             EEEEEccCCceeeccccccccccchh-hccCcceeeeechhhc-CCcCCCccccceeeeeccccCcccccce--------
Confidence            678999987          4444555 7999999999987665 4678888889999998643  2211111        


Q ss_pred             CCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee
Q 025649           70 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ  149 (250)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (250)
                         .+.....+..+.+.|      |++++|+++.|+.||+|..++..                                 
T Consensus       247 ---~~lknpGv~gvrIRp------D~KIlATAGWD~RiRVyswrtl~---------------------------------  284 (323)
T KOG0322|consen  247 ---ITLKNPGVSGVRIRP------DGKILATAGWDHRIRVYSWRTLN---------------------------------  284 (323)
T ss_pred             ---EEecCCCccceEEcc------CCcEEeecccCCcEEEEEeccCC---------------------------------
Confidence               111245688899998      99999999999999999998754                                 


Q ss_pred             ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEec
Q 025649          150 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  197 (250)
Q Consensus       150 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~  197 (250)
                             ++..++-|++.|++++|+   |+.+++|++|.|++|.+|++
T Consensus       285 -------pLAVLkyHsagvn~vAfs---pd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  285 -------PLAVLKYHSAGVNAVAFS---PDCELMAAASKDARISLWKL  322 (323)
T ss_pred             -------chhhhhhhhcceeEEEeC---CCCchhhhccCCceEEeeec
Confidence                   455778899999999999   88899999999999999986

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=2.8e-13  Score=106.23  Aligned_cols=207  Identities=11%  Similarity=0.009  Sum_probs=128.1

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec---CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG---LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |.+||..... .+.+. .+...+.+.+|+|||+ .|+..+   .+..|.+||+.+++.......              +.
T Consensus       181 l~~~d~dg~~-~~~lt-~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--------------~~  243 (429)
T PRK03629        181 LRVSDYDGYN-QFVVH-RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQVASF--------------PR  243 (429)
T ss_pred             EEEEcCCCCC-CEEee-cCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeEEccCC--------------CC
Confidence            5677776443 34455 5677899999999999 566433   345799999988764333221              23


Q ss_pred             ceeEEecCCCcccCCCCCEEEEE-eCCC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeee----eecc
Q 025649           79 FVHAIAIPDADMLDKTNKICVVA-KGDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL----DQSG  151 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  151 (250)
                      ......|+|      +|+.|+.. +.+|  .|.+||+.++........  ...+....|+|||+.++.....    ....
T Consensus       244 ~~~~~~~SP------DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~--~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~  315 (429)
T PRK03629        244 HNGAPAFSP------DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG--RSNNTEPTWFPDSQNLAYTSDQAGRPQVYK  315 (429)
T ss_pred             CcCCeEECC------CCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC--CCCcCceEECCCCCEEEEEeCCCCCceEEE
Confidence            345678998      99988765 4444  588999988765443322  2456789999999988743221    1111


Q ss_pred             --CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC---CeEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649          152 --GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC  226 (250)
Q Consensus       152 --~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (250)
                        .... ....+..+........|+   |+|++++..+.+   ..|.+||+.++...       .  ....  .......
T Consensus       316 ~d~~~g-~~~~lt~~~~~~~~~~~S---pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-------~--Lt~~--~~~~~p~  380 (429)
T PRK03629        316 VNINGG-APQRITWEGSQNQDADVS---SDGKFMVMVSSNGGQQHIAKQDLATGGVQ-------V--LTDT--FLDETPS  380 (429)
T ss_pred             EECCCC-CeEEeecCCCCccCEEEC---CCCCEEEEEEccCCCceEEEEECCCCCeE-------E--eCCC--CCCCCce
Confidence              0000 111222233345567889   899988876543   35888999886321       1  1111  1223567


Q ss_pred             ecCCCCCeEEEeeCCce---EEEEeC
Q 025649          227 TTPTESENLVVCDTSKV---VKVYSI  249 (250)
Q Consensus       227 ~~~~~~~~l~s~~~d~~---i~vw~~  249 (250)
                      |+| ||+.|+.++.++.   +.++++
T Consensus       381 ~Sp-DG~~i~~~s~~~~~~~l~~~~~  405 (429)
T PRK03629        381 IAP-NGTMVIYSSSQGMGSVLNLVST  405 (429)
T ss_pred             ECC-CCCEEEEEEcCCCceEEEEEEC
Confidence            887 8998888876654   556554

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=6.9e-14  Score=102.44  Aligned_cols=215  Identities=12%  Similarity=0.038  Sum_probs=148.7

Q ss_pred             cEEEEcc------cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649            2 WQIIDIR------QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         2 i~iwd~~------~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      +++|+++      +.+.+......|.+.|.|++|..... .+.+|..+++|.+.|+++.+.+..+....           
T Consensus        80 ~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qsi~V~~~~~-----------  147 (609)
T KOG4227|consen   80 GRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTVIKHDIETKQSIYVANENN-----------  147 (609)
T ss_pred             eeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCcceeEeeecccceeeeeecccC-----------
Confidence            5789876      33555555435678999999999888 89999999999999999998888776221           


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe--eccCCCCCCccceeecccceeEEE-------eee
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS--RSKSTTKPLKGSQSTSKVNIRDAE-------MEI  146 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  146 (250)
                      ....|+.+..+|      -.+.+++.+.++.|.+||.+..+...  ............+-|+|....|+.       .+.
T Consensus       148 ~~~~VY~m~~~P------~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~  221 (609)
T KOG4227|consen  148 NRGDVYHMDQHP------TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNV  221 (609)
T ss_pred             cccceeecccCC------CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCc
Confidence            245899999999      68899999999999999999755222  122233355677888887655553       234


Q ss_pred             eeeccCeeeeeecc---ccCc---cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC
Q 025649          147 LDQSGGKRLHLDYS---VGGH---TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK  220 (250)
Q Consensus       147 ~~~~~~~~~~~~~~---~~~h---~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  220 (250)
                      ||......  .+..   +.+-   ...-.++.|+   |+|+.|++--....-.+||+-+..         +......|..
T Consensus       222 ~D~R~~~~--~~~~~~~~~~L~~~~~~~M~~~~~---~~G~Q~msiRR~~~P~~~D~~S~R---------~~V~k~D~N~  287 (609)
T KOG4227|consen  222 FDRRMQAR--PVYQRSMFKGLPQENTEWMGSLWS---PSGNQFMSIRRGKCPLYFDFISQR---------CFVLKSDHNP  287 (609)
T ss_pred             eeeccccc--hHHhhhccccCcccchhhhheeeC---CCCCeehhhhccCCCEEeeeeccc---------ceeEeccCCC
Confidence            44443221  1111   1121   2223577899   899999887776777888988852         2222233332


Q ss_pred             -------ceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          221 -------KVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       221 -------~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                             .+.+++|.  +...+++|+.+=.|++|.++
T Consensus       288 ~GY~N~~T~KS~~F~--~D~~v~tGSD~~~i~~WklP  322 (609)
T KOG4227|consen  288 NGYCNIKTIKSMTFI--DDYTVATGSDHWGIHIWKLP  322 (609)
T ss_pred             Ccceeeeeeeeeeee--cceeeeccCcccceEEEecC
Confidence                   46677776  34459999999999999874

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=3.9e-13  Score=105.95  Aligned_cols=207  Identities=13%  Similarity=0.065  Sum_probs=127.7

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC---CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |.++|.. +...+.+. .|...+.+.+|+|||+ .|+..+.   +..|.+||+.+++......              .+.
T Consensus       184 l~~~d~d-g~~~~~lt-~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l~~--------------~~g  246 (435)
T PRK05137        184 LAIMDQD-GANVRYLT-DGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELVGN--------------FPG  246 (435)
T ss_pred             EEEECCC-CCCcEEEe-cCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEeec--------------CCC
Confidence            5677764 44456676 7888999999999999 6666543   4689999998876532221              234


Q ss_pred             ceeEEecCCCcccCCCCCEEE-EEeCCCe--EEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----c-
Q 025649           79 FVHAIAIPDADMLDKTNKICV-VAKGDGV--VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----S-  150 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~-~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-  150 (250)
                      .+.+.+|+|      +|+.|+ +.+.++.  |.+||+.++.......  .........|+|||+.++.......    . 
T Consensus       247 ~~~~~~~SP------DG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~--~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~  318 (435)
T PRK05137        247 MTFAPRFSP------DGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD--SPAIDTSPSYSPDGSQIVFESDRSGSPQLYV  318 (435)
T ss_pred             cccCcEECC------CCCEEEEEEecCCCceEEEEECCCCceEEccC--CCCccCceeEcCCCCEEEEEECCCCCCeEEE
Confidence            566788998      898775 4455554  7777988776543222  2245667899999998874321111    1 


Q ss_pred             -cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC---CeEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649          151 -GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC  226 (250)
Q Consensus       151 -~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (250)
                       +.... ....+..+...+....|+   |+|+.|+..+.+   ..|.+||+..+..          ..+ .....+....
T Consensus       319 ~d~~g~-~~~~lt~~~~~~~~~~~S---pdG~~ia~~~~~~~~~~i~~~d~~~~~~----------~~l-t~~~~~~~p~  383 (435)
T PRK05137        319 MNADGS-NPRRISFGGGRYSTPVWS---PRGDLIAFTKQGGGQFSIGVMKPDGSGE----------RIL-TSGFLVEGPT  383 (435)
T ss_pred             EECCCC-CeEEeecCCCcccCeEEC---CCCCEEEEEEcCCCceEEEEEECCCCce----------Eec-cCCCCCCCCe
Confidence             00000 111222223445667899   899998876543   3688888765421          111 1222456678


Q ss_pred             ecCCCCCeEEEeeCC------ceEEEEeC
Q 025649          227 TTPTESENLVVCDTS------KVVKVYSI  249 (250)
Q Consensus       227 ~~~~~~~~l~s~~~d------~~i~vw~~  249 (250)
                      |+| ||+.|+..+.+      ..+.++|+
T Consensus       384 ~sp-DG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        384 WAP-NGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             ECC-CCCEEEEEEccCCCCCcceEEEEEC
Confidence            998 88877654432      24666664

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.62  E-value=1.7e-14  Score=109.15  Aligned_cols=179  Identities=18%  Similarity=0.165  Sum_probs=124.2

Q ss_pred             CCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEE
Q 025649           31 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI  110 (250)
Q Consensus        31 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~  110 (250)
                      |++- -|+.|-.-|.|.+.|....+..+.+...         .......++++.|-|     .+...++++-.+|.+.+|
T Consensus       183 ~~g~-dllIGf~tGqvq~idp~~~~~sklfne~---------r~i~ktsvT~ikWvp-----g~~~~Fl~a~~sGnlyly  247 (636)
T KOG2394|consen  183 PKGL-DLLIGFTTGQVQLIDPINFEVSKLFNEE---------RLINKSSVTCIKWVP-----GSDSLFLVAHASGNLYLY  247 (636)
T ss_pred             CCCc-ceEEeeccCceEEecchhhHHHHhhhhc---------ccccccceEEEEEEe-----CCCceEEEEEecCceEEe
Confidence            4554 4677777889999887663332223211         111346799999998     467788888899999999


Q ss_pred             eCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC
Q 025649          111 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK  190 (250)
Q Consensus       111 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~  190 (250)
                      |.+..-         .....+-...+++..+. +..+......  .++..+.-..+.|...+|+   |||++||+.+.||
T Consensus       248 ~~~~~~---------~~t~p~~~~~k~~~~f~-i~t~ksk~~r--NPv~~w~~~~g~in~f~FS---~DG~~LA~VSqDG  312 (636)
T KOG2394|consen  248 DKEIVC---------GATAPSYQALKDGDQFA-ILTSKSKKTR--NPVARWHIGEGSINEFAFS---PDGKYLATVSQDG  312 (636)
T ss_pred             eccccc---------cCCCCcccccCCCCeeE-EeeeeccccC--CccceeEeccccccceeEc---CCCceEEEEecCc
Confidence            983210         01122223334454444 2222211111  2233333345589999999   8999999999999


Q ss_pred             eEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          191 LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       191 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .+||||..+.         +++..++..-+...+++|+| ||++|++|+.|..|.||.+
T Consensus       313 fLRvF~fdt~---------eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf  361 (636)
T KOG2394|consen  313 FLRIFDFDTQ---------ELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSF  361 (636)
T ss_pred             eEEEeeccHH---------HHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEe
Confidence            9999999997         67677778888999999998 9999999999999999986

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.62  E-value=7.5e-15  Score=111.28  Aligned_cols=139  Identities=14%  Similarity=0.096  Sum_probs=103.0

Q ss_pred             EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  115 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  115 (250)
                      .|+.++.||.+.+-+- .++..+.+..             |...+.+-.|+|      +|.-|++++.||.|++|.-.. 
T Consensus        77 ~~~i~s~DGkf~il~k-~~rVE~sv~A-------------H~~A~~~gRW~~------dGtgLlt~GEDG~iKiWSrsG-  135 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNK-SARVERSISA-------------HAAAISSGRWSP------DGAGLLTAGEDGVIKIWSRSG-  135 (737)
T ss_pred             eEEEEcCCceEEEecc-cchhhhhhhh-------------hhhhhhhcccCC------CCceeeeecCCceEEEEeccc-
Confidence            6888999999988765 3555445542             578899999999      999999999999999998653 


Q ss_pred             eeEeeccCCCCCCccceeecccceeEEEeeeeeec--cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEE
Q 025649          116 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS--GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK  193 (250)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~  193 (250)
                      ........ ....+.|++|.|+...++........  .......+...++|.+-|.++.|+   +..+++++|++|-..+
T Consensus       136 MLRStl~Q-~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~---~~s~lI~sgGED~kfK  211 (737)
T KOG1524|consen  136 MLRSTVVQ-NEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWS---TQSNIIASGGEDFRFK  211 (737)
T ss_pred             hHHHHHhh-cCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecC---ccccceeecCCceeEE
Confidence            22222222 23789999999988766632222221  122222345678999999999999   7889999999999999


Q ss_pred             EEecCC
Q 025649          194 VWDCSR  199 (250)
Q Consensus       194 iwd~~~  199 (250)
                      +||...
T Consensus       212 vWD~~G  217 (737)
T KOG1524|consen  212 IWDAQG  217 (737)
T ss_pred             eecccC
Confidence            999876

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=4.2e-14  Score=115.01  Aligned_cols=184  Identities=15%  Similarity=0.140  Sum_probs=128.6

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC---CccceecCCCCCCCCCCcccCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR---PNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      +|+|||.+.-+....+..+-...|+++.-+....+++++|-.||.|++||.+...   .+...+.             |.
T Consensus      1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~-------------h~ 1254 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE-------------HN 1254 (1387)
T ss_pred             EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc-------------cC
Confidence            4899999988888888756677888888765443389999999999999987543   2333332             23


Q ss_pred             Cc--eeEEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCee
Q 025649           78 AF--VHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKR  154 (250)
Q Consensus        78 ~~--v~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (250)
                      +.  |..+.+.+      .|- .|++|+.||.|++||++......                                   
T Consensus      1255 ~~~~Iv~~slq~------~G~~elvSgs~~G~I~~~DlR~~~~e~----------------------------------- 1293 (1387)
T KOG1517|consen 1255 DVEPIVHLSLQR------QGLGELVSGSQDGDIQLLDLRMSSKET----------------------------------- 1293 (1387)
T ss_pred             CcccceeEEeec------CCCcceeeeccCCeEEEEecccCcccc-----------------------------------
Confidence            33  88888876      443 59999999999999999631100                                   


Q ss_pred             eeeeccccCc---cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649          155 LHLDYSVGGH---TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE  231 (250)
Q Consensus       155 ~~~~~~~~~h---~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  231 (250)
                         ......|   .+..+++..+   +....+|+|+. +.|+||++.........-.+.   ....-...+.+++|+| .
T Consensus      1294 ---~~~iv~~~~yGs~lTal~VH---~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~---F~~q~~gs~scL~FHP-~ 1362 (1387)
T KOG1517|consen 1294 ---FLTIVAHWEYGSALTALTVH---EHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPG---FMGQRIGSVSCLAFHP-H 1362 (1387)
T ss_pred             ---cceeeeccccCccceeeeec---cCCCeeeecCc-ceEEEEecChhhhcccccCcc---cccCcCCCcceeeecc-h
Confidence               0011112   2258899999   88899999998 999999998743221100001   1112234578999998 5


Q ss_pred             CCeEEEeeCCceEEEEeC
Q 025649          232 SENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       232 ~~~l~s~~~d~~i~vw~~  249 (250)
                      .-++++|+.|..|.||..
T Consensus      1363 ~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1363 RLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred             hHhhhhccCCceEEEeec
Confidence            556889999999999964

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.60  E-value=9.6e-14  Score=98.85  Aligned_cols=162  Identities=13%  Similarity=0.094  Sum_probs=126.3

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC---CccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR---PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK   96 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (250)
                      -..+|+|.+|++|+. .++.+-....|.||.....+   ..++++ .            |...|+++.|+|      ..+
T Consensus         9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls-~------------Hd~~vtgvdWap------~sn   68 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLS-E------------HDKIVTGVDWAP------KSN   68 (361)
T ss_pred             ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCceeceehh-h------------hCcceeEEeecC------CCC
Confidence            457899999999999 89999999999999987654   344444 2            678899999999      899


Q ss_pred             EEEEEeCCCeEEEEeCCC-ceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeec
Q 025649           97 ICVVAKGDGVVDVINIES-ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM  175 (250)
Q Consensus        97 ~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  175 (250)
                      .|++++.|..-++|.... ++-                                      ++.-.+..+...+++|.|+ 
T Consensus        69 rIvtcs~drnayVw~~~~~~~W--------------------------------------kptlvLlRiNrAAt~V~Ws-  109 (361)
T KOG1523|consen   69 RIVTCSHDRNAYVWTQPSGGTW--------------------------------------KPTLVLLRINRAATCVKWS-  109 (361)
T ss_pred             ceeEccCCCCccccccCCCCee--------------------------------------ccceeEEEeccceeeEeec-
Confidence            999999999999999853 221                                      1112344567789999999 


Q ss_pred             CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          176 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       176 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                        |+++.|++||.-+.|.||-++....--     -....-+.+.+.|+++.|+| ++-++++|+.|++.+|+.
T Consensus       110 --P~enkFAVgSgar~isVcy~E~ENdWW-----VsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfS  174 (361)
T KOG1523|consen  110 --PKENKFAVGSGARLISVCYYEQENDWW-----VSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFS  174 (361)
T ss_pred             --CcCceEEeccCccEEEEEEEeccccee-----hhhhhCCccccceeeeeccC-CcceecccccCcceeEEE
Confidence              899999999999999999877642110     00012245677899999998 677899999999999985

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.60  E-value=1.1e-13  Score=98.62  Aligned_cols=177  Identities=16%  Similarity=0.119  Sum_probs=133.8

Q ss_pred             cEEEEccc---ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc-CCCCccceecCCCCCCCCCCcccCC
Q 025649            2 WQIIDIRQ---HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         2 i~iwd~~~---~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      |.||....   .+...+++ .|...|+.++|+|..+ .|++|+.|..-.+|... .++-..++.+           ..+.
T Consensus        34 vhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~~~~~WkptlvL-----------lRiN  100 (361)
T KOG1523|consen   34 VHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQPSGGTWKPTLVL-----------LRIN  100 (361)
T ss_pred             EEEEEecCCCCceeceehh-hhCcceeEEeecCCCC-ceeEccCCCCccccccCCCCeeccceeE-----------EEec
Confidence            44555543   34677888 9999999999999998 79999999999999984 4432222211           1146


Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee---EeeccCCCCCCccceeecccceeEEEeeeeeeccC--
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN---ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG--  152 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  152 (250)
                      ...+++.|+|      .++.+++|+.-..|.+|-.+....   .+.++.+....+.+++|+|++-+++ .|+.|....  
T Consensus       101 rAAt~V~WsP------~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla-aGs~D~k~rVf  173 (361)
T KOG1523|consen  101 RAATCVKWSP------KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA-AGSTDGKCRVF  173 (361)
T ss_pred             cceeeEeecC------cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec-ccccCcceeEE
Confidence            7899999999      999999999999999998876442   2345556668899999999999888 554443311  


Q ss_pred             --------------------eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649          153 --------------------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  201 (250)
Q Consensus       153 --------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~  201 (250)
                                          .-.+.+.++....+.+..+.|+   |.|..|+-.+.|..+.+=|.....
T Consensus       174 SayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs---~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  174 SAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS---PSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             EEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC---CCCCEeeEecCCCceEEeecCCCc
Confidence                                1122334454566889999999   899999999999999999988753

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=2.2e-13  Score=106.93  Aligned_cols=197  Identities=13%  Similarity=0.013  Sum_probs=119.3

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC---CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |.++|. .++....+. .+...+.+.+|+|+|+ .|+..+.   ...|.+||+.+++......              .+.
T Consensus       178 L~~~D~-dG~~~~~l~-~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~~--------------~~g  240 (427)
T PRK02889        178 LQISDA-DGQNAQSAL-SSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVAN--------------FKG  240 (427)
T ss_pred             EEEECC-CCCCceEec-cCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEeec--------------CCC
Confidence            455665 355555666 6788899999999998 6665553   2469999998886543221              123


Q ss_pred             ceeEEecCCCcccCCCCCEEE-EEeCCCeEEEEe--CCCceeEeeccCCCCCCccceeecccceeEEEeeeee----ecc
Q 025649           79 FVHAIAIPDADMLDKTNKICV-VAKGDGVVDVIN--IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSG  151 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~-~~~~d~~i~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  151 (250)
                      ...+.+|+|      +++.|+ +.+.++...+|.  +.++.. ..+.. .........|+|||+.++......    ...
T Consensus       241 ~~~~~~~SP------DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~  312 (427)
T PRK02889        241 SNSAPAWSP------DGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYR  312 (427)
T ss_pred             CccceEECC------CCCEEEEEEccCCCceEEEEECCCCCc-EECCC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEE
Confidence            456789998      998776 556777766665  444442 22222 224456788999999887432111    111


Q ss_pred             ----CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC---eEEEEecCCCcceecccccceeeeeeccCCceeE
Q 025649          152 ----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW  224 (250)
Q Consensus       152 ----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (250)
                          ....+.+ .+.+  .......|+   |+|++++..+.++   .|.+||+.++..         . .... ......
T Consensus       313 ~~~~~g~~~~l-t~~g--~~~~~~~~S---pDG~~Ia~~s~~~g~~~I~v~d~~~g~~---------~-~lt~-~~~~~~  375 (427)
T PRK02889        313 MPASGGAAQRV-TFTG--SYNTSPRIS---PDGKLLAYISRVGGAFKLYVQDLATGQV---------T-ALTD-TTRDES  375 (427)
T ss_pred             EECCCCceEEE-ecCC--CCcCceEEC---CCCCEEEEEEccCCcEEEEEEECCCCCe---------E-EccC-CCCccC
Confidence                0111111 1222  223456788   8999998776554   699999988632         1 1111 122356


Q ss_pred             EEecCCCCCeEEEeeCC
Q 025649          225 LCTTPTESENLVVCDTS  241 (250)
Q Consensus       225 ~~~~~~~~~~l~s~~~d  241 (250)
                      ..|+| ||+.|+.++.+
T Consensus       376 p~~sp-dg~~l~~~~~~  391 (427)
T PRK02889        376 PSFAP-NGRYILYATQQ  391 (427)
T ss_pred             ceECC-CCCEEEEEEec
Confidence            78998 78877665543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=5.2e-14  Score=96.73  Aligned_cols=176  Identities=10%  Similarity=0.041  Sum_probs=116.3

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      ..|..-+++|.++ +|+.|..+|.|.+..+++...-....   +..........|..+++.++|.        ..+|++|
T Consensus        11 ~tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~---~gk~~iv~eqahdgpiy~~~f~--------d~~Lls~   78 (325)
T KOG0649|consen   11 NTVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEP---PGKLKIVPEQAHDGPIYYLAFH--------DDFLLSG   78 (325)
T ss_pred             HHHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCC---CCCcceeeccccCCCeeeeeee--------hhheeec
Confidence            3466778999999 89999999999999986432111111   0111112224578899999987        3456665


Q ss_pred             eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCc
Q 025649          102 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK  181 (250)
Q Consensus       102 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  181 (250)
                      + ||.|+-|..+........+                         ..+...  .+.++-...-..|+++-..   |..+
T Consensus        79 g-dG~V~gw~W~E~~es~~~K-------------------------~lwe~~--~P~~~~~~evPeINam~ld---P~en  127 (325)
T KOG0649|consen   79 G-DGLVYGWEWNEEEESLATK-------------------------RLWEVK--IPMQVDAVEVPEINAMWLD---PSEN  127 (325)
T ss_pred             c-CceEEEeeehhhhhhccch-------------------------hhhhhc--CccccCcccCCccceeEec---cCCC
Confidence            4 5999999887533210000                         000000  0011101123468888888   5555


Q ss_pred             EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          182 YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       182 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      -++.++.|+.++-||++++         ...+.+.+|+.-+.++.--...+ .+++|+.||++++||.+
T Consensus       128 Si~~AgGD~~~y~~dlE~G---------~i~r~~rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~k  186 (325)
T KOG0649|consen  128 SILFAGGDGVIYQVDLEDG---------RIQREYRGHTDYVHSVVGRNANG-QILSGAEDGTVRVWDTK  186 (325)
T ss_pred             cEEEecCCeEEEEEEecCC---------EEEEEEcCCcceeeeeeecccCc-ceeecCCCccEEEEecc
Confidence            5556668999999999998         77788999999999997744355 48999999999999964

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.59  E-value=4e-14  Score=107.40  Aligned_cols=186  Identities=16%  Similarity=0.106  Sum_probs=131.5

Q ss_pred             cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCC
Q 025649            9 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA   88 (250)
Q Consensus         9 ~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   88 (250)
                      .++..+.+. +|.+.|.+-.|+|+|. -|+|++.||.|++|.-. |-...++. +            ....|+|++|.| 
T Consensus        93 ~~rVE~sv~-AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrs-GMLRStl~-Q------------~~~~v~c~~W~p-  155 (737)
T KOG1524|consen   93 SARVERSIS-AHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRS-GMLRSTVV-Q------------NEESIRCARWAP-  155 (737)
T ss_pred             cchhhhhhh-hhhhhhhhcccCCCCc-eeeeecCCceEEEEecc-chHHHHHh-h------------cCceeEEEEECC-
Confidence            344555667 8999999999999999 79999999999999863 43332322 2            347899999999 


Q ss_pred             cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeeeeeeccccCc
Q 025649           89 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLDYSVGGH  164 (250)
Q Consensus        89 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h  164 (250)
                           +.+-++-+. .+.+.+=.+.....+...+.+ ++.+.++.|++....+++ +..|.    ++. ....+..-..|
T Consensus       156 -----~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAH-DGiiL~~~W~~~s~lI~s-gGED~kfKvWD~-~G~~Lf~S~~~  226 (737)
T KOG1524|consen  156 -----NSNSIVFCQ-GGHISIKPLAANSKIIRWRAH-DGLVLSLSWSTQSNIIAS-GGEDFRFKIWDA-QGANLFTSAAE  226 (737)
T ss_pred             -----CCCceEEec-CCeEEEeecccccceeEEecc-CcEEEEeecCccccceee-cCCceeEEeecc-cCcccccCChh
Confidence                 555554442 356666666655555555554 488999999999999994 33222    222 23345666789


Q ss_pred             cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649          165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV  244 (250)
Q Consensus       165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  244 (250)
                      ..+|++++|+   |+ +.++.+|. .++++=                    ....+.|..++|++ ||..++.|...|.+
T Consensus       227 ey~ITSva~n---pd-~~~~v~S~-nt~R~~--------------------~p~~GSifnlsWS~-DGTQ~a~gt~~G~v  280 (737)
T KOG1524|consen  227 EYAITSVAFN---PE-KDYLLWSY-NTARFS--------------------SPRVGSIFNLSWSA-DGTQATCGTSTGQL  280 (737)
T ss_pred             ccceeeeeec---cc-cceeeeee-eeeeec--------------------CCCccceEEEEEcC-CCceeeccccCceE
Confidence            9999999999   77 66666653 344421                    22345789999998 99999998888876


Q ss_pred             EE
Q 025649          245 KV  246 (250)
Q Consensus       245 ~v  246 (250)
                      .+
T Consensus       281 ~~  282 (737)
T KOG1524|consen  281 IV  282 (737)
T ss_pred             EE
Confidence            43

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1.5e-13  Score=108.02  Aligned_cols=185  Identities=15%  Similarity=0.121  Sum_probs=115.0

Q ss_pred             cEEEEccccee--eeeeccCCCCCeeeEEEcCCCCeEEEE-ecCCCeEEEE--EccCCCCccceecCCCCCCCCCCcccC
Q 025649            2 WQIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVIS-GGLDSKLVMW--DFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         2 i~iwd~~~~~~--~~~l~~~h~~~v~~l~~~~~~~~~l~s-~s~dg~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      |++||+.+++.  +..+. +|   ...++|+|||+ .|+. .+.+|.+.||  |+.+++. ..+..             +
T Consensus       230 i~i~dl~tg~~~~l~~~~-g~---~~~~~wSPDG~-~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~-------------~  290 (429)
T PRK01742        230 LVVHDLRSGARKVVASFR-GH---NGAPAFSPDGS-RLAFASSKDGVLNIYVMGANGGTP-SQLTS-------------G  290 (429)
T ss_pred             EEEEeCCCCceEEEecCC-Cc---cCceeECCCCC-EEEEEEecCCcEEEEEEECCCCCe-Eeecc-------------C
Confidence            78999988754  33344 44   34689999999 5655 4568876666  5554443 23321             2


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCce-eEeeccCCCCCCccceeecccceeEEEeee-----eee
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESEL-NISRSKSTTKPLKGSQSTSKVNIRDAEMEI-----LDQ  149 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  149 (250)
                      ...+.+..|+|      +++.|+.++ .++...+|+++... ..... ..  .. ....|+|+|+.++..+.     +|.
T Consensus       291 ~~~~~~~~wSp------DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~--~~-~~~~~SpDG~~ia~~~~~~i~~~Dl  360 (429)
T PRK01742        291 AGNNTEPSWSP------DGQSILFTSDRSGSPQVYRMSASGGGASLV-GG--RG-YSAQISADGKTLVMINGDNVVKQDL  360 (429)
T ss_pred             CCCcCCEEECC------CCCEEEEEECCCCCceEEEEECCCCCeEEe-cC--CC-CCccCCCCCCEEEEEcCCCEEEEEC
Confidence            34567889998      898776554 67888888765421 12222 21  11 45789999999875432     222


Q ss_pred             ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649          150 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       150 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                      ..... +.+  ...+  ....+.|+   |+|++|+.++.++.+.+|++.....       .....+..|.+.+...+|+|
T Consensus       361 ~~g~~-~~l--t~~~--~~~~~~~s---PdG~~i~~~s~~g~~~~l~~~~~~G-------~~~~~l~~~~g~~~~p~wsp  425 (429)
T PRK01742        361 TSGST-EVL--SSTF--LDESPSIS---PNGIMIIYSSTQGLGKVLQLVSADG-------RFKARLPGSDGQVKFPAWSP  425 (429)
T ss_pred             CCCCe-EEe--cCCC--CCCCceEC---CCCCEEEEEEcCCCceEEEEEECCC-------CceEEccCCCCCCCCcccCC
Confidence            11111 111  1111  23457788   8999999999999888887643110       44455667888888899997


Q ss_pred             C
Q 025649          230 T  230 (250)
Q Consensus       230 ~  230 (250)
                      .
T Consensus       426 ~  426 (429)
T PRK01742        426 Y  426 (429)
T ss_pred             C
Confidence            4

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.56  E-value=7.7e-13  Score=92.25  Aligned_cols=119  Identities=20%  Similarity=0.329  Sum_probs=86.8

Q ss_pred             eeeeccCCCCCeeeEEEcCCCCeEEE--EecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649           13 YKSLRAGHSSICSSVQFIPWKPWEVI--SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM   90 (250)
Q Consensus        13 ~~~l~~~h~~~v~~l~~~~~~~~~l~--s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   90 (250)
                      ...+.....++|.+++|+|+|+ .|+  .|..++.|.+||++ ++.+..+.               ...+..+.|+|   
T Consensus        51 ~~~i~l~~~~~I~~~~WsP~g~-~favi~g~~~~~v~lyd~~-~~~i~~~~---------------~~~~n~i~wsP---  110 (194)
T PF08662_consen   51 VESIELKKEGPIHDVAWSPNGN-EFAVIYGSMPAKVTLYDVK-GKKIFSFG---------------TQPRNTISWSP---  110 (194)
T ss_pred             cceeeccCCCceEEEEECcCCC-EEEEEEccCCcccEEEcCc-ccEeEeec---------------CCCceEEEECC---
Confidence            3444312456799999999998 443  35567899999996 55555553               35678899999   


Q ss_pred             cCCCCCEEEEEeC---CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCcccc
Q 025649           91 LDKTNKICVVAKG---DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA  167 (250)
Q Consensus        91 ~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  167 (250)
                         +|++|++++.   .|.|.+||.++.+.+.                                        ... | ..
T Consensus       111 ---~G~~l~~~g~~n~~G~l~~wd~~~~~~i~----------------------------------------~~~-~-~~  145 (194)
T PF08662_consen  111 ---DGRFLVLAGFGNLNGDLEFWDVRKKKKIS----------------------------------------TFE-H-SD  145 (194)
T ss_pred             ---CCCEEEEEEccCCCcEEEEEECCCCEEee----------------------------------------ccc-c-Cc
Confidence               9999999874   4679999999644322                                        221 2 23


Q ss_pred             EEEEEeecCCCCCcEEEEee------CCCeEEEEecCC
Q 025649          168 ASCVAFSMFGERGKYLISGG------NDKLVKVWDCSR  199 (250)
Q Consensus       168 v~~~~~~p~~~~~~~l~s~~------~d~~i~iwd~~~  199 (250)
                      ++.++|+   |+|++|+++.      .|+.++||+...
T Consensus       146 ~t~~~Ws---PdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  146 ATDVEWS---PDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEEEEEc---CCCCEEEEEEeccceeccccEEEEEecC
Confidence            6788999   8999999876      378899999865

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=2.9e-12  Score=92.98  Aligned_cols=200  Identities=16%  Similarity=0.186  Sum_probs=127.0

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecC-CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI   97 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (250)
                      || .+|++++|.+||. .+++++. |..|.|||..++..+.....+             ...+.-+.|+|      ++.+
T Consensus       194 gh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~~g-------------lgg~slLkwSP------dgd~  252 (445)
T KOG2139|consen  194 GH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIPKG-------------LGGFSLLKWSP------DGDV  252 (445)
T ss_pred             CC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcccccccC-------------CCceeeEEEcC------CCCE
Confidence            44 6899999999999 7888776 578999999998876665434             56788999999      9999


Q ss_pred             EEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee---------eeeccC--------eeeeeecc
Q 025649           98 CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI---------LDQSGG--------KRLHLDYS  160 (250)
Q Consensus        98 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--------~~~~~~~~  160 (250)
                      |+++.-|+..++|+.............. ..+....|+|+|+.++.+..         .+....        ....++..
T Consensus       253 lfaAt~davfrlw~e~q~wt~erw~lgs-grvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaD  331 (445)
T KOG2139|consen  253 LFAATCDAVFRLWQENQSWTKERWILGS-GRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD  331 (445)
T ss_pred             EEEecccceeeeehhcccceecceeccC-CceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeecc
Confidence            9999999999999665433222222221 47888999999998874221         111111        01111111


Q ss_pred             cc------C---ccccEEEEEeecCCCCCcEEEEeeCCC--------eEEEEecCCCcceecccccceeeeeeccCCcee
Q 025649          161 VG------G---HTAAASCVAFSMFGERGKYLISGGNDK--------LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN  223 (250)
Q Consensus       161 ~~------~---h~~~v~~~~~~p~~~~~~~l~s~~~d~--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (250)
                      +.      +   -.+++.+++|.   |.|.+|++.-..+        .|.+||.+......      +...-..-.....
T Consensus       332 L~e~ti~ag~~l~cgeaq~lawD---psGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve------ls~cg~i~ge~P~  402 (445)
T KOG2139|consen  332 LQEVTICAGQRLCCGEAQCLAWD---PSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE------LSYCGMIGGEYPA  402 (445)
T ss_pred             chhhhhhcCcccccCccceeeEC---CCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE------EEecccccCCCCc
Confidence            11      1   13578899999   8999999875433        47778887753221      1000001111234


Q ss_pred             EEEecC--CCCCeEEEeeCCceEEEEeC
Q 025649          224 WLCTTP--TESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       224 ~~~~~~--~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .+.|.|  +++.+|..+=..|.+.-|++
T Consensus       403 ~IsF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  403 YISFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             eEEeeecccCCcEEEEEeccCceEeeee
Confidence            455554  35555555666676666653

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.54  E-value=9e-14  Score=99.57  Aligned_cols=198  Identities=14%  Similarity=0.072  Sum_probs=137.3

Q ss_pred             EEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEe
Q 025649            5 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA   84 (250)
Q Consensus         5 wd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   84 (250)
                      -|.++-+..+.+.  --+.|.-+.|..+....|.....|+.|.+|++...+--..+..+             ++.+.++.
T Consensus        34 Rd~~tlq~~qlf~--cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg-------------~agls~~~   98 (447)
T KOG4497|consen   34 RDSETLQLHQLFL--CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG-------------QAGLSSIS   98 (447)
T ss_pred             eccchhhHHHHHH--HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC-------------CCcceeee
Confidence            3444444443333  24578889999998866777888999999999888777777755             67899999


Q ss_pred             cCCCcccCCCCC-EEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc------Ceeeee
Q 025649           85 IPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG------GKRLHL  157 (250)
Q Consensus        85 ~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  157 (250)
                      |+|      +|+ +|.+...|-.|.+|.+.+.+.......  +..+..++|+|||++.+.....|..+      ...-..
T Consensus        99 WSP------dgrhiL~tseF~lriTVWSL~t~~~~~~~~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l  170 (447)
T KOG4497|consen   99 WSP------DGRHILLTSEFDLRITVWSLNTQKGYLLPHP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL  170 (447)
T ss_pred             ECC------CcceEeeeecceeEEEEEEeccceeEEeccc--ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence            999      885 556667899999999998665443322  35668899999999988444333332      122233


Q ss_pred             eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE
Q 025649          158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV  237 (250)
Q Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  237 (250)
                      ++.+.-..-..+.+.|+   |||..|+         +||---.          .......-+-.+..++|+| .+++|+.
T Consensus       171 l~~f~~dT~DltgieWs---Pdg~~la---------Vwd~~Le----------ykv~aYe~~lG~k~v~wsP-~~qflav  227 (447)
T KOG4497|consen  171 LKEFKLDTIDLTGIEWS---PDGNWLA---------VWDNVLE----------YKVYAYERGLGLKFVEWSP-CNQFLAV  227 (447)
T ss_pred             HHhcCCCcccccCceEC---CCCcEEE---------Eecchhh----------heeeeeeeccceeEEEecc-ccceEEe
Confidence            45566566677899999   8887665         5553331          1001111123577899998 7899999


Q ss_pred             eeCCceEEEEe
Q 025649          238 CDTSKVVKVYS  248 (250)
Q Consensus       238 ~~~d~~i~vw~  248 (250)
                      |+.|+.+++-|
T Consensus       228 GsyD~~lrvln  238 (447)
T KOG4497|consen  228 GSYDQMLRVLN  238 (447)
T ss_pred             eccchhhhhhc
Confidence            99999988754

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=4.3e-12  Score=101.38  Aligned_cols=107  Identities=10%  Similarity=0.079  Sum_probs=85.4

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      .|.-.+++.++||+++ ++++|..||.|.+|.--..+         .+......+-+|.+.|.+++|++      +|.+|
T Consensus       203 ~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~---------~~~~t~t~lHWH~~~V~~L~fS~------~G~~L  266 (792)
T KOG1963|consen  203 HHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSS---------DDSETCTLLHWHHDEVNSLSFSS------DGAYL  266 (792)
T ss_pred             hhcccceeEEeccccc-eEEEeccCCcEEEEeccccc---------cccccceEEEecccccceeEEec------CCceE
Confidence            4777899999999999 99999999999999753210         00112234456788999999998      99999


Q ss_pred             EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE
Q 025649           99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE  143 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (250)
                      ++|+..|.+.+|.+.+++  .++-......+..+.++||+.+.+.
T Consensus       267 lSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl  309 (792)
T KOG1963|consen  267 LSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSL  309 (792)
T ss_pred             eecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEE
Confidence            999999999999999988  3334444588999999999988873

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=2.9e-12  Score=93.00  Aligned_cols=184  Identities=12%  Similarity=0.011  Sum_probs=124.1

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      ..+..++|++.-- .++++..|-+|++||-.. ++...++..            ....|++++|.|     ..++.|++|
T Consensus        99 ~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~Lks~------------sQrnvtclawRP-----lsaselavg  159 (445)
T KOG2139|consen   99 IDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTKLKSV------------SQRNVTCLAWRP-----LSASELAVG  159 (445)
T ss_pred             cceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCceecch------------hhcceeEEEecc-----CCcceeeee
Confidence            4577899999665 688999999999999876 444455433            357899999999     466788888


Q ss_pred             eCCCeEEEEeCCCcee------------EeeccCCCCCCccceeecccceeEEEee----eeeeccCeeeeeeccccCcc
Q 025649          102 KGDGVVDVINIESELN------------ISRSKSTTKPLKGSQSTSKVNIRDAEME----ILDQSGGKRLHLDYSVGGHT  165 (250)
Q Consensus       102 ~~d~~i~~~d~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~h~  165 (250)
                      +..| |.+|.......            ...+..+....+.++.|.+||..+++..    ..-.++......+.-..-..
T Consensus       160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl  238 (445)
T KOG2139|consen  160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL  238 (445)
T ss_pred             ecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC
Confidence            8855 89997753111            1123333447899999999999998632    22223322222111112234


Q ss_pred             ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649          166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC  238 (250)
Q Consensus       166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  238 (250)
                      +.++-+.||   |+|.+|+++.-|+..++|+.....         -.....--.+.|...+|+| +|++|+-+
T Consensus       239 gg~slLkwS---Pdgd~lfaAt~davfrlw~e~q~w---------t~erw~lgsgrvqtacWsp-cGsfLLf~  298 (445)
T KOG2139|consen  239 GGFSLLKWS---PDGDVLFAATCDAVFRLWQENQSW---------TKERWILGSGRVQTACWSP-CGSFLLFA  298 (445)
T ss_pred             CceeeEEEc---CCCCEEEEecccceeeeehhcccc---------eecceeccCCceeeeeecC-CCCEEEEE
Confidence            668889999   899999999999999999655431         1112222334899999998 77765443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=2.1e-13  Score=104.73  Aligned_cols=168  Identities=15%  Similarity=0.153  Sum_probs=130.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |.|.++...+...-|+ --.+.|.++.|+|... +|+.++. ..|++||+...+.++.+..+             ...|.
T Consensus       548 VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqelvKkL~tg-------------~kwiS  611 (733)
T KOG0650|consen  548 VLIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQELVKKLLTG-------------SKWIS  611 (733)
T ss_pred             EEEEecccccccCchh-hcCCceeEEEecCCCc-eEEEEec-cceEEEehhHHHHHHHHhcC-------------Ceeee
Confidence            4566666666666665 5677899999999998 6777765 58999999888777777655             57899


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec-----------
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS-----------  150 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  150 (250)
                      +++++|      .|.-|+.|+.|+.+..+|+.-..........+...+.+++|++.-.+++ +++-|+.           
T Consensus       612 ~msihp------~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfa-s~sdDgtv~Vfhg~VY~D  684 (733)
T KOG0650|consen  612 SMSIHP------NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFA-SGSDDGTVIVFHGMVYND  684 (733)
T ss_pred             eeeecC------CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceee-eecCCCcEEEEeeeeehh
Confidence            999999      9999999999999999999876555444444457788899888877777 3333332           


Q ss_pred             --cCeeeeeeccccCcccc----EEEEEeecCCCCCcEEEEeeCCCeEEEE
Q 025649          151 --GGKRLHLDYSVGGHTAA----ASCVAFSMFGERGKYLISGGNDKLVKVW  195 (250)
Q Consensus       151 --~~~~~~~~~~~~~h~~~----v~~~~~~p~~~~~~~l~s~~~d~~i~iw  195 (250)
                        .....-++..+.+|...    |..+.|+   |...+|++++.||+|++|
T Consensus       685 l~qnpliVPlK~L~gH~~~~~~gVLd~~wH---P~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  685 LLQNPLIVPLKRLRGHEKTNDLGVLDTIWH---PRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             hhcCCceEeeeeccCceeecccceEeeccc---CCCceEEecCCCceEEee
Confidence              12335567888999766    8888999   788899999999999998

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.50  E-value=1.6e-13  Score=116.97  Aligned_cols=183  Identities=16%  Similarity=0.163  Sum_probs=134.3

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      .+-..|.++.-+|... +.+||+.||.|++|....++.+..++..            .+..++.+.|+-      .|+.+
T Consensus      2206 ~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~------------g~s~vtr~~f~~------qGnk~ 2266 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTA------------GNSRVTRSRFNH------QGNKF 2266 (2439)
T ss_pred             cccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeecc------------Ccchhhhhhhcc------cCCce
Confidence            4557788999999999 8999999999999999999988888755            357788888987      89999


Q ss_pred             EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceee----------cccceeEEEeeeeeeccCeeeeeeccccCccccE
Q 025649           99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST----------SKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA  168 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  168 (250)
                      ..+..||.+.+|....  .+......+........|          +++++-   ++.||........++.  ..|.+.+
T Consensus      2267 ~i~d~dg~l~l~q~~p--k~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n---~~lwDtl~~~~~s~v~--~~H~~ga 2339 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQASP--KPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRN---VCLWDTLLPPMNSLVH--TCHDGGA 2339 (2439)
T ss_pred             eeeccCCceeecccCC--cceeccccCCccccceeeeehhhhccccCCCCCc---ccchhcccCcccceee--eecCCCc
Confidence            9999999999999872  122222222233333333          222222   3344544444344444  7899999


Q ss_pred             EEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          169 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       169 ~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      ++++|.   |..+.|++|+.+|.|++||++..         ++...+..         +.  ...+|++|+..|.|+||+
T Consensus      2340 T~l~~~---P~~qllisggr~G~v~l~D~rqr---------ql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2340 TVLAYA---PKHQLLISGGRKGEVCLFDIRQR---------QLRHTFQA---------LD--TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred             eEEEEc---CcceEEEecCCcCcEEEeehHHH---------HHHHHhhh---------hh--hhheeeccCcccceEEEE
Confidence            999999   88899999999999999999986         33222222         32  345899999999999998


Q ss_pred             CC
Q 025649          249 IS  250 (250)
Q Consensus       249 ~~  250 (250)
                      +.
T Consensus      2397 ~s 2398 (2439)
T KOG1064|consen 2397 LS 2398 (2439)
T ss_pred             cc
Confidence            74

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.50  E-value=1.5e-11  Score=88.42  Aligned_cols=211  Identities=15%  Similarity=0.150  Sum_probs=131.8

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      .|.+|++...+-..+++ ....++..++|||+|+.+|.+..-|-.|.+|.+.+.+....-. .             ...+
T Consensus        72 ~vqvwsl~Qpew~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-p-------------K~~~  136 (447)
T KOG4497|consen   72 KVQVWSLVQPEWYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-P-------------KTNV  136 (447)
T ss_pred             eEEEEEeecceeEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-c-------------ccCc
Confidence            37899999999999999 8888999999999998788889999999999998755322211 1             2334


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCC------------------------------------CeEEEEeCCCceeEeeccCC
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGD------------------------------------GVVDVINIESELNISRSKST  124 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d------------------------------------~~i~~~d~~~~~~~~~~~~~  124 (250)
                      ..++|+|      +|++.+.++.-                                    +.+.+||.--...+.  .-.
T Consensus       137 kg~~f~~------dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--aYe  208 (447)
T KOG4497|consen  137 KGYAFHP------DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--AYE  208 (447)
T ss_pred             eeEEECC------CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee--eee
Confidence            5566666      55555554321                                    122333322111110  001


Q ss_pred             CCCCccceeecccceeEEEeeeeeeccCe-----------------------------eeee------------------
Q 025649          125 TKPLKGSQSTSKVNIRDAEMEILDQSGGK-----------------------------RLHL------------------  157 (250)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~------------------  157 (250)
                      -.-.+..++|+|.+++++ +|..|...+-                             ..+.                  
T Consensus       209 ~~lG~k~v~wsP~~qfla-vGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~  287 (447)
T KOG4497|consen  209 RGLGLKFVEWSPCNQFLA-VGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAH  287 (447)
T ss_pred             eccceeEEEeccccceEE-eeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccC
Confidence            114566778888888887 6666633110                             0000                  


Q ss_pred             -----------------ecc------ccCccccEEEEEeecCCCCCcEEEEeeC--CCeEEEEecCCCcceeccccccee
Q 025649          158 -----------------DYS------VGGHTAAASCVAFSMFGERGKYLISGGN--DKLVKVWDCSRFQGVQTSINNDLL  212 (250)
Q Consensus       158 -----------------~~~------~~~h~~~v~~~~~~p~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~  212 (250)
                                       +..      +......+.-++|+   +|..|++|-..  -+.+-+||++..         + +
T Consensus       288 ~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs---~Ds~y~aTrnd~~PnalW~Wdlq~l---------~-l  354 (447)
T KOG4497|consen  288 IWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS---CDSTYAATRNDKYPNALWLWDLQNL---------K-L  354 (447)
T ss_pred             ccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec---CCceEEeeecCCCCceEEEEechhh---------h-h
Confidence                             001      11123346678898   89889888653  468999999995         2 2


Q ss_pred             eeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          213 IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       213 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ........+|....|.|...+ |+.+.....+++|..
T Consensus       355 ~avLiQk~piraf~WdP~~pr-L~vctg~srLY~W~p  390 (447)
T KOG4497|consen  355 HAVLIQKHPIRAFEWDPGRPR-LVVCTGKSRLYFWAP  390 (447)
T ss_pred             hhhhhhccceeEEEeCCCCce-EEEEcCCceEEEEcC
Confidence            344445568899999996555 555544556888864

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=1.6e-12  Score=99.50  Aligned_cols=186  Identities=15%  Similarity=0.182  Sum_probs=134.3

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |+-.+++.|+.+..|. ...+.++++..++... +|++|+.+|.|..||.++...+.++.......  ..........|+
T Consensus       157 vYRlNLEqGrfL~P~~-~~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~--s~pg~~~~~svT  232 (703)
T KOG2321|consen  157 VYRLNLEQGRFLNPFE-TDSGELNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASSVN--SHPGGDAAPSVT  232 (703)
T ss_pred             eEEEEccccccccccc-cccccceeeeecCccc-eEEecccCceEEEecchhhhhheeeecccccC--CCccccccCcce
Confidence            4456788899999998 7779999999999888 99999999999999999888777776442100  001111223589


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccc
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV  161 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (250)
                      ++.|+.      +|-.+++|..+|.+.+||+++.+.+..                                       .-
T Consensus       233 al~F~d------~gL~~aVGts~G~v~iyDLRa~~pl~~---------------------------------------kd  267 (703)
T KOG2321|consen  233 ALKFRD------DGLHVAVGTSTGSVLIYDLRASKPLLV---------------------------------------KD  267 (703)
T ss_pred             EEEecC------CceeEEeeccCCcEEEEEcccCCceee---------------------------------------cc
Confidence            999996      799999999999999999997553321                                       11


Q ss_pred             cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC
Q 025649          162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS  241 (250)
Q Consensus       162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  241 (250)
                      .+..-+|..+.|.+. ..++.++|. ....++|||-.+++         .. ........++.+|+.| ++.+|+++-.+
T Consensus       268 h~~e~pi~~l~~~~~-~~q~~v~S~-Dk~~~kiWd~~~Gk---------~~-asiEpt~~lND~C~~p-~sGm~f~Ane~  334 (703)
T KOG2321|consen  268 HGYELPIKKLDWQDT-DQQNKVVSM-DKRILKIWDECTGK---------PM-ASIEPTSDLNDFCFVP-GSGMFFTANES  334 (703)
T ss_pred             cCCccceeeeccccc-CCCceEEec-chHHhhhcccccCC---------ce-eeccccCCcCceeeec-CCceEEEecCC
Confidence            233457888888731 113445544 46789999999983         32 3334455699999998 66688898888


Q ss_pred             ceEEEEeC
Q 025649          242 KVVKVYSI  249 (250)
Q Consensus       242 ~~i~vw~~  249 (250)
                      +.+..|=+
T Consensus       335 ~~m~~yyi  342 (703)
T KOG2321|consen  335 SKMHTYYI  342 (703)
T ss_pred             CcceeEEc
Confidence            87766543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.49  E-value=4.7e-11  Score=91.44  Aligned_cols=181  Identities=17%  Similarity=0.203  Sum_probs=120.5

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |.+.|..+.+.+.++. .....-..+.|+|||+ ++++++.||.|.++|+.+++.+.+++.+              ....
T Consensus        18 v~viD~~t~~~~~~i~-~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~G--------------~~~~   81 (369)
T PF02239_consen   18 VAVIDGATNKVVARIP-TGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVVATIKVG--------------GNPR   81 (369)
T ss_dssp             EEEEETTT-SEEEEEE--STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE-S--------------SEEE
T ss_pred             EEEEECCCCeEEEEEc-CCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCcccEEEEEecC--------------CCcc
Confidence            6789999999999998 5444445678999999 7888889999999999999999999866              5678


Q ss_pred             EEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeecc
Q 025649           82 AIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS  160 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (250)
                      ++++++      +|++++++. ..+.+.++|.++.+.+..+....                                 ..
T Consensus        82 ~i~~s~------DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~---------------------------------~~  122 (369)
T PF02239_consen   82 GIAVSP------DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG---------------------------------MP  122 (369)
T ss_dssp             EEEE--------TTTEEEEEEEETTEEEEEETTT--EEEEEE--E---------------------------------E-
T ss_pred             eEEEcC------CCCEEEEEecCCCceeEeccccccceeeccccc---------------------------------cc
Confidence            899998      999998775 68999999999877665543320                                 01


Q ss_pred             ccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE-e
Q 025649          161 VGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV-C  238 (250)
Q Consensus       161 ~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~  238 (250)
                      .......+.++..+   +... ++++--+.+.|.+-|.....        .+...............|.| ++++++. .
T Consensus       123 ~~~~~~Rv~aIv~s---~~~~~fVv~lkd~~~I~vVdy~d~~--------~~~~~~i~~g~~~~D~~~dp-dgry~~va~  190 (369)
T PF02239_consen  123 VDGPESRVAAIVAS---PGRPEFVVNLKDTGEIWVVDYSDPK--------NLKVTTIKVGRFPHDGGFDP-DGRYFLVAA  190 (369)
T ss_dssp             TTTS---EEEEEE----SSSSEEEEEETTTTEEEEEETTTSS--------CEEEEEEE--TTEEEEEE-T-TSSEEEEEE
T ss_pred             ccccCCCceeEEec---CCCCEEEEEEccCCeEEEEEecccc--------ccceeeecccccccccccCc-ccceeeecc
Confidence            11134567788778   5556 45555555888888887753        23334444555677888887 8887665 4


Q ss_pred             eCCceEEEEeC
Q 025649          239 DTSKVVKVYSI  249 (250)
Q Consensus       239 ~~d~~i~vw~~  249 (250)
                      ..+..|-++|.
T Consensus       191 ~~sn~i~viD~  201 (369)
T PF02239_consen  191 NGSNKIAVIDT  201 (369)
T ss_dssp             GGGTEEEEEET
T ss_pred             cccceeEEEee
Confidence            45667777775

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.49  E-value=1.6e-11  Score=96.67  Aligned_cols=199  Identities=12%  Similarity=0.036  Sum_probs=121.1

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC---CeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD---SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |.++|.. +.....+. .+...+...+|+|+|+ .|+.++.+   ..|.+||+.+++......              ...
T Consensus       172 l~~~d~~-g~~~~~l~-~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~~--------------~~~  234 (417)
T TIGR02800       172 LQVADYD-GANPQTIT-RSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVAS--------------FPG  234 (417)
T ss_pred             EEEEcCC-CCCCEEee-cCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEeec--------------CCC
Confidence            5566764 33345565 5777889999999999 66665433   579999998875433222              123


Q ss_pred             ceeEEecCCCcccCCCCCEEEE-EeCCC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----c-
Q 025649           79 FVHAIAIPDADMLDKTNKICVV-AKGDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----S-  150 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-  150 (250)
                      .+.+++|+|      +++.|+. .+.++  .|.+||+.++........  ........|+|+|+.++.......    . 
T Consensus       235 ~~~~~~~sp------Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~  306 (417)
T TIGR02800       235 MNGAPAFSP------DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG--PGIDTEPSWSPDGKSIAFTSDRGGSPQIYM  306 (417)
T ss_pred             CccceEECC------CCCEEEEEECCCCCccEEEEECCCCCEEECCCC--CCCCCCEEECCCCCEEEEEECCCCCceEEE
Confidence            456688998      8887754 44443  588899987654433222  133456789999998874321111    1 


Q ss_pred             -cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC---eEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649          151 -GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC  226 (250)
Q Consensus       151 -~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (250)
                       .....+ ...+..+...+....|+   |+|++++.++.++   .|.+||+.++...          ..... .......
T Consensus       307 ~d~~~~~-~~~l~~~~~~~~~~~~s---pdg~~i~~~~~~~~~~~i~~~d~~~~~~~----------~l~~~-~~~~~p~  371 (417)
T TIGR02800       307 MDADGGE-VRRLTFRGGYNASPSWS---PDGDLIAFVHREGGGFNIAVMDLDGGGER----------VLTDT-GLDESPS  371 (417)
T ss_pred             EECCCCC-EEEeecCCCCccCeEEC---CCCCEEEEEEccCCceEEEEEeCCCCCeE----------EccCC-CCCCCce
Confidence             001111 11222334456678899   8999998887765   7899998875221          11111 1233456


Q ss_pred             ecCCCCCeEEEeeCC
Q 025649          227 TTPTESENLVVCDTS  241 (250)
Q Consensus       227 ~~~~~~~~l~s~~~d  241 (250)
                      |+| |++.|+..+.+
T Consensus       372 ~sp-dg~~l~~~~~~  385 (417)
T TIGR02800       372 FAP-NGRMILYATTR  385 (417)
T ss_pred             ECC-CCCEEEEEEeC
Confidence            887 77777765544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.48  E-value=1.7e-12  Score=93.59  Aligned_cols=208  Identities=17%  Similarity=0.234  Sum_probs=145.0

Q ss_pred             eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc-CCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649           11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD   89 (250)
Q Consensus        11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (250)
                      .++..++ ||.+.|++...-|..+ -+++.+.|.++|+|--+ .++.-..+...            .|.++.++.+.+  
T Consensus        15 ~ll~~~e-G~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~~------------mP~~~~~~~y~~--   78 (404)
T KOG1409|consen   15 ELLSKIE-GSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYHY------------MPSPCSAMEYVS--   78 (404)
T ss_pred             hhhhhhc-CchhhhhhheeccCCC-CeEEccccceeeeEEeccccccCchhhhh------------CCCCceEeeeec--
Confidence            3566788 9999999999989888 69999999999999754 34443333322            578899999998  


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCcee---EeeccCCCCCCccceeecccceeEEE-----------------------
Q 025649           90 MLDKTNKICVVAKGDGVVDVINIESELN---ISRSKSTTKPLKGSQSTSKVNIRDAE-----------------------  143 (250)
Q Consensus        90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  143 (250)
                          +...|++|-.+|++.-+.+.....   ..+....+...+..+.|+.....+++                       
T Consensus        79 ----e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~  154 (404)
T KOG1409|consen   79 ----ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF  154 (404)
T ss_pred             ----cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe
Confidence                889999999999998887654211   11111112223333333222221110                       


Q ss_pred             ----------e-eeeeec----------cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcc
Q 025649          144 ----------M-EILDQS----------GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  202 (250)
Q Consensus       144 ----------~-~~~~~~----------~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~  202 (250)
                                . ...++-          ......++.++.+|.+.+.++.|.   +....|++|..|..+.+||+-... 
T Consensus       155 ~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd---~~~~~LfSg~~d~~vi~wdigg~~-  230 (404)
T KOG1409|consen  155 ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD---PGQRLLFSGASDHSVIMWDIGGRK-  230 (404)
T ss_pred             eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc---CCCcEEEeccccCceEEEeccCCc-
Confidence                      0 000000          012334567888999999999999   788899999999999999998763 


Q ss_pred             eecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          203 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                             .......+|...|..+...+ --+.+.+++.||.|.+||++
T Consensus       231 -------g~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  231 -------GTAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             -------ceeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEecc
Confidence                   34456678999999887775 55679999999999999974

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.5e-11  Score=96.58  Aligned_cols=189  Identities=8%  Similarity=0.006  Sum_probs=113.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      |.+||+.+++... +. ...+.+...+|+|||+.++++.+.+|  .|.+||+.+++......              ....
T Consensus       225 i~i~dl~~G~~~~-l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~--------------~~~~  288 (429)
T PRK03629        225 LVIQTLANGAVRQ-VA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD--------------GRSN  288 (429)
T ss_pred             EEEEECCCCCeEE-cc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC--------------CCCC
Confidence            6788888775432 22 23334557899999994444445555  58889998776543322              1234


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCC-C--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee------c
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGD-G--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ------S  150 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  150 (250)
                      +....|+|      +++.|+..+.+ +  .|.++|+.++.......  .........|+|||+.++.....+.      .
T Consensus       289 ~~~~~wSP------DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~--~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~  360 (429)
T PRK03629        289 NTEPTWFP------DSQNLAYTSDQAGRPQVYKVNINGGAPQRITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ  360 (429)
T ss_pred             cCceEECC------CCCEEEEEeCCCCCceEEEEECCCCCeEEeec--CCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence            67789998      99988776653 4  45555776654432211  1234567889999999885432211      0


Q ss_pred             cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCe---EEEEecCCCcceecccccceeeeeeccCCceeEEEe
Q 025649          151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL---VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT  227 (250)
Q Consensus       151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  227 (250)
                      +....+ ...+... .......|+   |+|++|+.++.++.   +.++++...          ....+..|.+.+...+|
T Consensus       361 dl~~g~-~~~Lt~~-~~~~~p~~S---pDG~~i~~~s~~~~~~~l~~~~~~G~----------~~~~l~~~~~~~~~p~W  425 (429)
T PRK03629        361 DLATGG-VQVLTDT-FLDETPSIA---PNGTMVIYSSSQGMGSVLNLVSTDGR----------FKARLPATDGQVKFPAW  425 (429)
T ss_pred             ECCCCC-eEEeCCC-CCCCCceEC---CCCCEEEEEEcCCCceEEEEEECCCC----------CeEECccCCCCcCCccc
Confidence            111111 1111111 122356788   89999999887764   677777553          33445567778888888


Q ss_pred             cC
Q 025649          228 TP  229 (250)
Q Consensus       228 ~~  229 (250)
                      +|
T Consensus       426 sp  427 (429)
T PRK03629        426 SP  427 (429)
T ss_pred             CC
Confidence            87

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=1.6e-12  Score=95.00  Aligned_cols=137  Identities=13%  Similarity=0.161  Sum_probs=112.0

Q ss_pred             cEEEEcccceeeeeeccCC--------CCCeeeEEEcCC--CCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGH--------SSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGN   70 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h--------~~~v~~l~~~~~--~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~   70 (250)
                      ++|||+++.+.+..-++-.        .-+++++.|.+.  .. .|++++.-+.|++||.+.+ +++..+.+.       
T Consensus       175 lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~-~fat~T~~hqvR~YDt~~qRRPV~~fd~~-------  246 (412)
T KOG3881|consen  175 LKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNY-KFATITRYHQVRLYDTRHQRRPVAQFDFL-------  246 (412)
T ss_pred             eeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCc-eEEEEecceeEEEecCcccCcceeEeccc-------
Confidence            6899999887665544211        126778899886  45 8999999999999999865 466666654       


Q ss_pred             CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec
Q 025649           71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS  150 (250)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (250)
                            ...+.++...|      +++.+++|..-+.+..||++.++...                               
T Consensus       247 ------E~~is~~~l~p------~gn~Iy~gn~~g~l~~FD~r~~kl~g-------------------------------  283 (412)
T KOG3881|consen  247 ------ENPISSTGLTP------SGNFIYTGNTKGQLAKFDLRGGKLLG-------------------------------  283 (412)
T ss_pred             ------cCcceeeeecC------CCcEEEEecccchhheecccCceeec-------------------------------
Confidence                  56789999998      99999999999999999999766432                               


Q ss_pred             cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649          151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  200 (250)
Q Consensus       151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~  200 (250)
                              ..+.+-.+.|.++..+   |.++++++++-|+.+||+|+++.
T Consensus       284 --------~~~kg~tGsirsih~h---p~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  284 --------CGLKGITGSIRSIHCH---PTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             --------cccCCccCCcceEEEc---CCCceEEeeccceeEEEeecccc
Confidence                    2467778899999999   88899999999999999999995

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.48  E-value=5.6e-12  Score=89.94  Aligned_cols=95  Identities=16%  Similarity=0.202  Sum_probs=82.8

Q ss_pred             cEEEEccccee--eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCe-EEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK-LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~--~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |+|-|+...+.  ...+. +|.+.|.|++.+.+|. ++||+|..|+ |||||..+|..+..++.+.           .+.
T Consensus       161 vQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~-----------d~A  227 (346)
T KOG2111|consen  161 VQIVDLASTKPNAPSIIN-AHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGV-----------DRA  227 (346)
T ss_pred             EEEEEhhhcCcCCceEEE-cccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCC-----------chh
Confidence            56777765444  35677 9999999999999999 9999999998 6999999999999998662           467


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  115 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  115 (250)
                      .|++++|+|      +..+|++++..|+++++.++..
T Consensus       228 ~iy~iaFSp------~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  228 DIYCIAFSP------NSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             eEEEEEeCC------CccEEEEEcCCCeEEEEEeecC
Confidence            899999999      9999999999999999999863

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.46  E-value=3.3e-12  Score=103.80  Aligned_cols=171  Identities=14%  Similarity=0.186  Sum_probs=129.2

Q ss_pred             cEEEEcccceeeeeeccCCCCCee-----eEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICS-----SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~-----~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      +.+||...+.....+.  +.....     -+-++++.- ++++|+.-+.|.+|+..... ......+            |
T Consensus       111 ~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~~~dn-~p~~l~G------------H  174 (967)
T KOG0974|consen  111 LLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKPHEDN-KPIRLKG------------H  174 (967)
T ss_pred             EEEEecccCceehhcC--CCceEEEEeEEEEeccCcEE-EEEeccccccEEEEeccccC-Ccceecc------------c
Confidence            4577877777776666  332211     222345544 89999999999999987222 1222223            7


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeee
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH  156 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (250)
                      ...+..+.++.      +|+++++.+.|.++|+|++++.+...                                     
T Consensus       175 eG~iF~i~~s~------dg~~i~s~SdDRsiRlW~i~s~~~~~-------------------------------------  211 (967)
T KOG0974|consen  175 EGSIFSIVTSL------DGRYIASVSDDRSIRLWPIDSREVLG-------------------------------------  211 (967)
T ss_pred             CCceEEEEEcc------CCcEEEEEecCcceeeeecccccccC-------------------------------------
Confidence            89999999998      99999999999999999999755221                                     


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC-ceeEEEecCCCCCeE
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESENL  235 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l  235 (250)
                        ...-+|...|..+.|.   |+  .++|++.|.+.++|+...          ..+..+.+|.. .++.++..+ +...+
T Consensus       212 --~~~fgHsaRvw~~~~~---~n--~i~t~gedctcrvW~~~~----------~~l~~y~~h~g~~iw~~~~~~-~~~~~  273 (967)
T KOG0974|consen  212 --CTGFGHSARVWACCFL---PN--RIITVGEDCTCRVWGVNG----------TQLEVYDEHSGKGIWKIAVPI-GVIIK  273 (967)
T ss_pred             --cccccccceeEEEEec---cc--eeEEeccceEEEEEeccc----------ceehhhhhhhhcceeEEEEcC-CceEE
Confidence              1345799999999999   65  999999999999997766          34456777765 588888876 66678


Q ss_pred             EEeeCCceEEEEeC
Q 025649          236 VVCDTSKVVKVYSI  249 (250)
Q Consensus       236 ~s~~~d~~i~vw~~  249 (250)
                      +|++.|+.+++|++
T Consensus       274 vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  274 VTGGNDSTLKLWDL  287 (967)
T ss_pred             EeeccCcchhhhhh
Confidence            99999999999986

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.46  E-value=1e-12  Score=106.65  Aligned_cols=133  Identities=17%  Similarity=0.147  Sum_probs=108.1

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |.+|+....+.-..+. ||.+.|..+.++.+|. +++++|+|.++|+|++.+.+.....-++            |+..+.
T Consensus       157 iivW~~~~dn~p~~l~-GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fg------------HsaRvw  222 (967)
T KOG0974|consen  157 IIVWKPHEDNKPIRLK-GHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFG------------HSARVW  222 (967)
T ss_pred             EEEEeccccCCcceec-ccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCccccc------------ccceeE
Confidence            5688876333333678 9999999999999999 9999999999999999998877655455            899999


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccc
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV  161 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (250)
                      .+.+.|      +  ++++++.|.+.++|+.+..+                                         +..+
T Consensus       223 ~~~~~~------n--~i~t~gedctcrvW~~~~~~-----------------------------------------l~~y  253 (967)
T KOG0974|consen  223 ACCFLP------N--RIITVGEDCTCRVWGVNGTQ-----------------------------------------LEVY  253 (967)
T ss_pred             EEEecc------c--eeEEeccceEEEEEecccce-----------------------------------------ehhh
Confidence            999997      5  99999999999999765322                                         1244


Q ss_pred             cCcc-ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649          162 GGHT-AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  200 (250)
Q Consensus       162 ~~h~-~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~  200 (250)
                      .+|. ..|..++..   ++...++|++.|+.+++||+...
T Consensus       254 ~~h~g~~iw~~~~~---~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  254 DEHSGKGIWKIAVP---IGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             hhhhhcceeEEEEc---CCceEEEeeccCcchhhhhhhcc
Confidence            5553 458888888   77788999999999999998654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=9.5e-12  Score=95.45  Aligned_cols=202  Identities=12%  Similarity=0.101  Sum_probs=126.5

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      .|...-+.|..+|||+.+++||.....|++||+.+......-.+.             ...|.-...+.      |-..+
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD-------------ae~V~feiLsD------D~SK~  109 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD-------------AEVVDFEILSD------DYSKS  109 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc-------------ccceeEEEecc------chhhh
Confidence            477888999999999988899999999999999765432221111             22333333343      45555


Q ss_pred             EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-eeec--cCeeeeeeccccCccccEEEEEeec
Q 025649           99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-LDQS--GGKRLHLDYSVGGHTAAASCVAFSM  175 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~h~~~v~~~~~~p  175 (250)
                      +.-..|.+|.+...-.......+.    ..-..++++.-.--+...+. .+..  ..+++..+..+....+.++++..+ 
T Consensus       110 v~L~~DR~IefHak~G~hy~~RIP----~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in-  184 (703)
T KOG2321|consen  110 VFLQNDRTIEFHAKYGRHYRTRIP----KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSIN-  184 (703)
T ss_pred             eEeecCceeeehhhcCeeeeeecC----cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeec-
Confidence            556677777665433211111111    12233444332222221221 1111  234455566777777889999999 


Q ss_pred             CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC-----ceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          176 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-----KVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       176 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                        +...+|++|+.||.|-.||.+......+.   ........|.+     .|+++.|.. +|-.+++|..+|.+.|||++
T Consensus       185 --~~hgLla~Gt~~g~VEfwDpR~ksrv~~l---~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLR  258 (703)
T KOG2321|consen  185 --EEHGLLACGTEDGVVEFWDPRDKSRVGTL---DAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLR  258 (703)
T ss_pred             --CccceEEecccCceEEEecchhhhhheee---ecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcc
Confidence              77789999999999999999987544221   11111122333     499999985 68889999999999999985

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.45  E-value=3.8e-11  Score=84.94  Aligned_cols=189  Identities=11%  Similarity=0.131  Sum_probs=125.8

Q ss_pred             cEEEEcccceeee--eeccCCCCCeeeEEEcC---CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            2 WQIIDIRQHCLYK--SLRAGHSSICSSVQFIP---WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         2 i~iwd~~~~~~~~--~l~~~h~~~v~~l~~~~---~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      +.+++++..+...  .++..-++.+..+.|.-   +|...++-+..+|.|.++..........++ +.      ......
T Consensus        48 l~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~-~l------s~~ki~  120 (339)
T KOG0280|consen   48 LHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLR-GL------SSKKIS  120 (339)
T ss_pred             eEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeec-cc------chhhhh
Confidence            4566766555433  22212345567777753   333356777788999998876544333332 10      000001


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeee
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH  156 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (250)
                      .....++.|++      .+..++++..+|.+.+-+....                                      ..+
T Consensus       121 ~~~~lslD~~~------~~~~i~vs~s~G~~~~v~~t~~--------------------------------------~le  156 (339)
T KOG0280|consen  121 VVEALSLDIST------SGTKIFVSDSRGSISGVYETEM--------------------------------------VLE  156 (339)
T ss_pred             heeeeEEEeec------cCceEEEEcCCCcEEEEeccee--------------------------------------eee
Confidence            11245677776      7777888888888774433311                                      123


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      ..+..+.|.-+++...|+-..  .+++.+|+.|+.+..||++....       ......+-|...|.++.-+|+.+.+|+
T Consensus       157 ~vq~wk~He~E~Wta~f~~~~--pnlvytGgDD~~l~~~D~R~p~~-------~i~~n~kvH~~GV~SI~ss~~~~~~I~  227 (339)
T KOG0280|consen  157 KVQTWKVHEFEAWTAKFSDKE--PNLVYTGGDDGSLSCWDIRIPKT-------FIWHNSKVHTSGVVSIYSSPPKPTYIA  227 (339)
T ss_pred             ecccccccceeeeeeecccCC--CceEEecCCCceEEEEEecCCcc-------eeeecceeeecceEEEecCCCCCceEE
Confidence            345788999999999998533  37899999999999999994321       333446789999999999999999999


Q ss_pred             EeeCCceEEEEeCC
Q 025649          237 VCDTSKVVKVYSIS  250 (250)
Q Consensus       237 s~~~d~~i~vw~~~  250 (250)
                      ||+.|-.|++||.+
T Consensus       228 TGsYDe~i~~~DtR  241 (339)
T KOG0280|consen  228 TGSYDECIRVLDTR  241 (339)
T ss_pred             Eeccccceeeeehh
Confidence            99999999999975

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=1.1e-10  Score=92.22  Aligned_cols=207  Identities=14%  Similarity=0.022  Sum_probs=118.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC---CeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD---SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |.++|.+.+. .+.+. .+...+...+|+|+|+ .|+..+.+   ..|.+||+.+++......              .+.
T Consensus       181 l~~~d~~g~~-~~~l~-~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~~l~~--------------~~g  243 (430)
T PRK00178        181 LQRSDYDGAR-AVTLL-QSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRREQITN--------------FEG  243 (430)
T ss_pred             EEEECCCCCC-ceEEe-cCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEEEccC--------------CCC
Confidence            4566765443 34555 5778899999999998 56554433   468999998876533222              123


Q ss_pred             ceeEEecCCCcccCCCCCEEEE-EeCCC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----ec-
Q 025649           79 FVHAIAIPDADMLDKTNKICVV-AKGDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QS-  150 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-  150 (250)
                      ......|+|      +|+.|+. ...++  .|.++|+.++.......  .........|+|||+.++.....+    .. 
T Consensus       244 ~~~~~~~Sp------DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~--~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~  315 (430)
T PRK00178        244 LNGAPAWSP------DGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN--HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYK  315 (430)
T ss_pred             CcCCeEECC------CCCEEEEEEccCCCceEEEEECCCCCeEEccc--CCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence            345688998      8988764 44444  68888998876543222  223456678999999877432111    11 


Q ss_pred             -cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC-C--eEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649          151 -GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-K--LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC  226 (250)
Q Consensus       151 -~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (250)
                       .....+ ...+...........|+   |+|++++..+.+ +  .|.++|+.++...       .+  .  .........
T Consensus       316 ~d~~~g~-~~~lt~~~~~~~~~~~S---pdg~~i~~~~~~~~~~~l~~~dl~tg~~~-------~l--t--~~~~~~~p~  380 (430)
T PRK00178        316 VNVNGGR-AERVTFVGNYNARPRLS---ADGKTLVMVHRQDGNFHVAAQDLQRGSVR-------IL--T--DTSLDESPS  380 (430)
T ss_pred             EECCCCC-EEEeecCCCCccceEEC---CCCCEEEEEEccCCceEEEEEECCCCCEE-------Ec--c--CCCCCCCce
Confidence             000000 01111111222346788   899988876643 3  5888999886321       11  1  111222447


Q ss_pred             ecCCCCCeEEEeeC-Cc--eEEEEeC
Q 025649          227 TTPTESENLVVCDT-SK--VVKVYSI  249 (250)
Q Consensus       227 ~~~~~~~~l~s~~~-d~--~i~vw~~  249 (250)
                      |+| ||+.++..+. ++  .|.++++
T Consensus       381 ~sp-dg~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        381 VAP-NGTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             ECC-CCCEEEEEEecCCceEEEEEEC
Confidence            887 7777766543 33  3444443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.44  E-value=1.1e-12  Score=91.07  Aligned_cols=208  Identities=13%  Similarity=0.125  Sum_probs=122.7

Q ss_pred             CCCC-CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecC----CCcccCC
Q 025649           19 GHSS-ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIP----DADMLDK   93 (250)
Q Consensus        19 ~h~~-~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~   93 (250)
                      +|.+ .|+.+.++.+.  .|+++..++.+.....-++.+...++...           ..++.++++.+    |-....-
T Consensus        33 ~~~d~~~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~~~rt~-----------~i~~~~~~a~~sep~p~~~~s~   99 (319)
T KOG4714|consen   33 QHADVKLSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISLWERDD-----------GIDPFKVLAKNSEIDPNDACTM   99 (319)
T ss_pred             cccceEEEEeechhhh--eeecccchhheeeeccceEEEechhhccc-----------CcCceeeeeccCCCCCcccccc
Confidence            4443 35566666554  57788777777766655444433332110           00111112111    1111112


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE--eeeeeecc---CeeeeeeccccC---cc
Q 025649           94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE--MEILDQSG---GKRLHLDYSVGG---HT  165 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~---h~  165 (250)
                      .++.+++++.||.+.+++.+.................+..+...+..+.+  .+.++..+   ....+++..+..   ..
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~  179 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL  179 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence            46789999999999999988632222111111112222333334444443  22222221   122222222221   12


Q ss_pred             ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649          166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK  245 (250)
Q Consensus       166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  245 (250)
                      ..|++++-+|  ...+.+++|+.||.+.+||.++..        .+...+..|+.+++.+-|+|.++..|++++.||.+.
T Consensus       180 ~~v~~l~~hp--~qq~~v~cgt~dg~~~l~d~rn~~--------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw  249 (319)
T KOG4714|consen  180 DAVTALCSHP--AQQHLVCCGTDDGIVGLWDARNVA--------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLW  249 (319)
T ss_pred             ccchhhhCCc--ccccEEEEecCCCeEEEEEccccc--------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEE
Confidence            3488888885  345678889999999999999973        455677899999999999999999999999999999


Q ss_pred             EEeC
Q 025649          246 VYSI  249 (250)
Q Consensus       246 vw~~  249 (250)
                      .||-
T Consensus       250 ~wda  253 (319)
T KOG4714|consen  250 HWDA  253 (319)
T ss_pred             EEcC
Confidence            9985

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.5e-12  Score=99.38  Aligned_cols=132  Identities=16%  Similarity=0.175  Sum_probs=104.9

Q ss_pred             cccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC
Q 025649           73 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG  152 (250)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (250)
                      +..|.+-|.++.|+.      +|.+|++|+.|-.+.|||.-..+.+.                                 
T Consensus        46 L~GH~GCVN~LeWn~------dG~lL~SGSDD~r~ivWd~~~~Kllh---------------------------------   86 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNA------DGELLASGSDDTRLIVWDPFEYKLLH---------------------------------   86 (758)
T ss_pred             hccccceecceeecC------CCCEEeecCCcceEEeecchhcceee---------------------------------
Confidence            344889999999998      99999999999999999987433221                                 


Q ss_pred             eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccc-ceeeeeeccCCceeEEEecCCC
Q 025649          153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN-DLLIKNINLNKKVNWLCTTPTE  231 (250)
Q Consensus       153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~  231 (250)
                            ..-.+|...|.++.|-|.. +.+++++|+.|..|++||+...+.-...+.. +.......|...|..++..|..
T Consensus        87 ------sI~TgHtaNIFsvKFvP~t-nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~  159 (758)
T KOG1310|consen   87 ------SISTGHTANIFSVKFVPYT-NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG  159 (758)
T ss_pred             ------eeecccccceeEEeeeccC-CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC
Confidence                  1225799999999999753 4578999999999999999874433222221 3445567899999999999866


Q ss_pred             CCeEEEeeCCceEEEEeCC
Q 025649          232 SENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       232 ~~~l~s~~~d~~i~vw~~~  250 (250)
                      +..+.+++.||+|+-||++
T Consensus       160 PhtfwsasEDGtirQyDiR  178 (758)
T KOG1310|consen  160 PHTFWSASEDGTIRQYDIR  178 (758)
T ss_pred             CceEEEecCCcceeeeccc
Confidence            6889999999999999985

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.42  E-value=3.5e-11  Score=92.42  Aligned_cols=196  Identities=13%  Similarity=0.082  Sum_probs=139.1

Q ss_pred             EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc--------CCCCCEEEEEeCCCeE
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML--------DKTNKICVVAKGDGVV  107 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~l~~~~~d~~i  107 (250)
                      ++|....||.+++||..+++....+....    .-.+.+....+...+..+|..+.        ..+...++-|...|.|
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~----~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFAPIA----SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeeccch----hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            89999999999999999888766664220    01111112222233334442110        1245678888899999


Q ss_pred             EEEeCCCceeEeecc-CCCCCCccceeecccceeEEEee---eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEE
Q 025649          108 DVINIESELNISRSK-STTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL  183 (250)
Q Consensus       108 ~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l  183 (250)
                      -+|+...++....+. ..+...+.++.++.+-..+.+++   ....+.......++.+.+....+.++.++   |+|..+
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is---~D~~~l  159 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCIS---PDGKIL  159 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEc---CCCCEE
Confidence            999999999887776 55668888888887777776422   23334455566667777888889999999   899999


Q ss_pred             EEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCC----CCCeEEE-eeCCceEEEEeC
Q 025649          184 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT----ESENLVV-CDTSKVVKVYSI  249 (250)
Q Consensus       184 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~s-~~~d~~i~vw~~  249 (250)
                      ++++  +.|++||++++         +.+..+.+|.++|.++.|...    .|.++++ ...+.-+.+|-+
T Consensus       160 ~~as--~~ik~~~~~~k---------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v  219 (541)
T KOG4547|consen  160 LTAS--RQIKVLDIETK---------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV  219 (541)
T ss_pred             Eecc--ceEEEEEccCc---------eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence            9997  68999999998         888999999999999988752    1556655 445666777743

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.41  E-value=1.8e-10  Score=88.29  Aligned_cols=221  Identities=13%  Similarity=0.120  Sum_probs=123.6

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|.++|+.+++.+++++ ... ...++++++||+.+++++..++.+.++|.++.+.++.+..+......      ....+
T Consensus        59 ~vsviD~~~~~~v~~i~-~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~------~~~Rv  130 (369)
T PF02239_consen   59 TVSVIDLATGKVVATIK-VGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG------PESRV  130 (369)
T ss_dssp             EEEEEETTSSSEEEEEE--SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT------S---E
T ss_pred             eEEEEECCcccEEEEEe-cCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc------cCCCc
Confidence            37899999999999999 433 45789999999944455567899999999999998888644110000      23456


Q ss_pred             eEEecCCCcccCCCCCEEE-EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE-------eeeeeeccC
Q 025649           81 HAIAIPDADMLDKTNKICV-VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE-------MEILDQSGG  152 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  152 (250)
                      .++..+|      ....++ +.-..+.|-+.|......+...............|+|++++++.       ++..|....
T Consensus       131 ~aIv~s~------~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~  204 (369)
T PF02239_consen  131 AAIVASP------GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG  204 (369)
T ss_dssp             EEEEE-S------SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             eeEEecC------CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence            6776676      555444 44455888888877654433222222356667888999887753       111121110


Q ss_pred             e----------------------------------------------------eeeeeccccCccccEEEEEeecCCCCC
Q 025649          153 K----------------------------------------------------RLHLDYSVGGHTAAASCVAFSMFGERG  180 (250)
Q Consensus       153 ~----------------------------------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~  180 (250)
                      .                                                    ..+.++++.....+ .-+..+   |++
T Consensus       205 k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~th---P~s  280 (369)
T PF02239_consen  205 KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTH---PDS  280 (369)
T ss_dssp             EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-----TT-
T ss_pred             eEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecC---CCC
Confidence            0                                                    00111122222222 445557   889


Q ss_pred             cEEEEe----eCCCeEEEEecCCCcceecccccceeeeee-ccCCceeEEEecCCCCCeEEEee--CCceEEEEeC
Q 025649          181 KYLISG----GNDKLVKVWDCSRFQGVQTSINNDLLIKNI-NLNKKVNWLCTTPTESENLVVCD--TSKVVKVYSI  249 (250)
Q Consensus       181 ~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~--~d~~i~vw~~  249 (250)
                      +++...    ...+.|.++|.++.         +....+. .-...+..+.|++ +|+.+..+.  .++.|.+||.
T Consensus       281 ~~vwvd~~~~~~~~~v~viD~~tl---------~~~~~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  281 RYVWVDTFLNPDADTVQVIDKKTL---------KVVKTITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             SEEEEE-TT-SSHT-EEEEECCGT---------EEEE-HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEET
T ss_pred             ccEEeeccCCCCCceEEEEECcCc---------ceeEEEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEEC
Confidence            998887    44589999999997         3333332 2223588899997 888665544  3347999985

...

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=3.9e-10  Score=88.45  Aligned_cols=211  Identities=13%  Similarity=0.033  Sum_probs=118.5

Q ss_pred             EEEEcccceeeeeeccCCCCCeeeEEEcCCCCeE-E-EEecCC--CeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE-V-ISGGLD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         3 ~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~-l-~s~s~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      .+.|...+ ..+.+. .....+..-+|+|||+.+ + ++...+  ..|.+.++.+++.......              +.
T Consensus       168 ~~~d~dG~-~~~~lt-~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~--------------~g  231 (428)
T PRK01029        168 WSVDYDGQ-NLRPLT-QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL--------------QG  231 (428)
T ss_pred             EEEcCCCC-CceEcc-cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--------------CC
Confidence            34454333 334455 445566778999999732 2 244333  4577778877764433331              23


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeC-----CCeEEEEeCCCce--eEeeccCCCCCCccceeecccceeEEEeeeeee--
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKG-----DGVVDVINIESEL--NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ--  149 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  149 (250)
                      .....+|+|      ||+.|+..+.     +-.+..|++..+.  ....+............|+|||+.++.....+.  
T Consensus       232 ~~~~p~wSP------DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~  305 (428)
T PRK01029        232 NQLMPTFSP------RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRP  305 (428)
T ss_pred             CccceEECC------CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCc
Confidence            345678998      9988876553     2234457766531  111222111134467899999998874332111  


Q ss_pred             --ccC---eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC---CeEEEEecCCCcceecccccceeeeeeccCCc
Q 025649          150 --SGG---KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKK  221 (250)
Q Consensus       150 --~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  221 (250)
                        +..   ........+..+...+....|+   |+|+.|+..+.+   ..|.+||+.+++..          .+......
T Consensus       306 ~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS---PDG~~Laf~~~~~g~~~I~v~dl~~g~~~----------~Lt~~~~~  372 (428)
T PRK01029        306 RIYIMQIDPEGQSPRLLTKKYRNSSCPAWS---PDGKKIAFCSVIKGVRQICVYDLATGRDY----------QLTTSPEN  372 (428)
T ss_pred             eEEEEECcccccceEEeccCCCCccceeEC---CCCCEEEEEEcCCCCcEEEEEECCCCCeE----------EccCCCCC
Confidence              110   0001112233334456778899   899988876543   47999999887321          22222234


Q ss_pred             eeEEEecCCCCCeEEE-eeC--CceEEEEeC
Q 025649          222 VNWLCTTPTESENLVV-CDT--SKVVKVYSI  249 (250)
Q Consensus       222 v~~~~~~~~~~~~l~s-~~~--d~~i~vw~~  249 (250)
                      +....|+| ||+.|+. +..  ...|.++|+
T Consensus       373 ~~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        373 KESPSWAI-DSLHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             ccceEECC-CCCEEEEEECCCCCceEEEEEC
Confidence            56688987 7877664 332  346777775

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.40  E-value=3.6e-09  Score=81.01  Aligned_cols=210  Identities=15%  Similarity=0.160  Sum_probs=126.1

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccc---eecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKI---VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK   96 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (250)
                      ......++++|+++.++++.-.+|.|.++++.. +.....   +.....   ......-.....+++.++|      +++
T Consensus        86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~---g~~~~rq~~~h~H~v~~~p------dg~  156 (345)
T PF10282_consen   86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS---GPNPDRQEGPHPHQVVFSP------DGR  156 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE---ESSTTTTSSTCEEEEEE-T------TSS
T ss_pred             CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC---CCcccccccccceeEEECC------CCC
Confidence            344568999999994444445689999999986 332222   211000   0000001235678999999      999


Q ss_pred             EEEEEe-CCCeEEEEeCCCce--e--EeeccCCCCCCccceeecccceeEEEee-------eeeec-cCeeeee---ecc
Q 025649           97 ICVVAK-GDGVVDVINIESEL--N--ISRSKSTTKPLKGSQSTSKVNIRDAEME-------ILDQS-GGKRLHL---DYS  160 (250)
Q Consensus        97 ~l~~~~-~d~~i~~~d~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~---~~~  160 (250)
                      ++++.. ....|.+|++....  .  ...+..+.......+.|+|+++++..+.       .++.. .....+.   +..
T Consensus       157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~  236 (345)
T PF10282_consen  157 FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST  236 (345)
T ss_dssp             EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred             EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence            887764 45689999997654  2  2334455667889999999999887422       22222 0111222   222


Q ss_pred             ccC---ccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCC-cceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          161 VGG---HTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRF-QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       161 ~~~---h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                      +..   .......++++   |+|++|.++. .++.|.+|++... ..+      ..+............++++| +|++|
T Consensus       237 ~~~~~~~~~~~~~i~is---pdg~~lyvsnr~~~sI~vf~~d~~~g~l------~~~~~~~~~G~~Pr~~~~s~-~g~~l  306 (345)
T PF10282_consen  237 LPEGFTGENAPAEIAIS---PDGRFLYVSNRGSNSISVFDLDPATGTL------TLVQTVPTGGKFPRHFAFSP-DGRYL  306 (345)
T ss_dssp             CETTSCSSSSEEEEEE----TTSSEEEEEECTTTEEEEEEECTTTTTE------EEEEEEEESSSSEEEEEE-T-TSSEE
T ss_pred             ccccccccCCceeEEEe---cCCCEEEEEeccCCEEEEEEEecCCCce------EEEEEEeCCCCCccEEEEeC-CCCEE
Confidence            211   12257889999   8999887765 4779999999432 111      23333333345588999997 88888


Q ss_pred             EEee-CCceEEEEeC
Q 025649          236 VVCD-TSKVVKVYSI  249 (250)
Q Consensus       236 ~s~~-~d~~i~vw~~  249 (250)
                      +++. .++.|.+|++
T Consensus       307 ~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  307 YVANQDSNTVSVFDI  321 (345)
T ss_dssp             EEEETTTTEEEEEEE
T ss_pred             EEEecCCCeEEEEEE
Confidence            8766 6778999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.36  E-value=3.7e-10  Score=94.00  Aligned_cols=235  Identities=10%  Similarity=-0.047  Sum_probs=141.4

Q ss_pred             CcEEEEcccc-------eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccc--eecCCCCCCCCC
Q 025649            1 MWQIIDIRQH-------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI--VNFGLPENNGNA   71 (250)
Q Consensus         1 ti~iwd~~~~-------~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~~   71 (250)
                      ||++||+..-       +...++. --.+.+.++...+.+. .+|.++.||.|++.++......+.  .....+.     
T Consensus      1072 tVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n----- 1144 (1431)
T KOG1240|consen 1072 TVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPN----- 1144 (1431)
T ss_pred             eEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCC-eEEEEcCCCeEEEEEccccccccceeeeeeccc-----
Confidence            6999998631       2223343 3567899999999999 899999999999999875211111  0000000     


Q ss_pred             CcccCCCceeEEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCCceeEeeccCCC-CCCccceeecccceeEEE---eee
Q 025649           72 GQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTT-KPLKGSQSTSKVNIRDAE---MEI  146 (250)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~  146 (250)
                       .......+..-++..     ..+. .++.+...+.|..||++........+... .+.+++++.+|.+..++.   .|.
T Consensus      1145 -~~~~g~vv~m~a~~~-----~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1145 -LKKDGVVVSMHAFTA-----IVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred             -ccCCCceEEeecccc-----cccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCce
Confidence             000111223333332     1334 78888889999999999877665555433 378999999999998873   222


Q ss_pred             eeeccCeeeeeeccc-cCccccEEEEEeecCCCCCcEEEEee--CCCeEEEEecCCCcceeccccc---ceeeeee----
Q 025649          147 LDQSGGKRLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQGVQTSINN---DLLIKNI----  216 (250)
Q Consensus       147 ~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~----  216 (250)
                      ...|+.+-..++... ..+..++..+..+|..+.....++++  ..+-|.+|++.++.+.......   ..+....    
T Consensus      1219 l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~ 1298 (1431)
T KOG1240|consen 1219 LVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSND 1298 (1431)
T ss_pred             EEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhccccc
Confidence            333443332233332 23457888888887666545555544  4778999999998655321111   1111000    


Q ss_pred             ---ccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          217 ---NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       217 ---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                         .+.-.....++.. .+.++++|+.|..|+.||.
T Consensus      1299 ~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1299 ARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred             CCCCCcccceeeeccc-CCceeeecCCccceeeccC
Confidence               1111222223332 4457899999999999996

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.7e-10  Score=91.19  Aligned_cols=172  Identities=10%  Similarity=-0.036  Sum_probs=106.1

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCe--EEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK--LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      .|.+||+.+++.. .+. .+.+.+...+|+|+|+.++++.+.++.  |.+||+.+++... +..             +..
T Consensus       227 ~i~~~dl~~g~~~-~l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~-------------~~~  290 (435)
T PRK05137        227 RVYLLDLETGQRE-LVG-NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTD-------------SPA  290 (435)
T ss_pred             EEEEEECCCCcEE-Eee-cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccC-------------CCC
Confidence            3789999887653 455 567778899999999855556666665  6677887765433 321             233


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeC-C--CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----ecc
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKG-D--GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSG  151 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  151 (250)
                      ......|+|      +++.|+..+. +  ..|.++|+.++........  ........|+|+|+.++......    ...
T Consensus       291 ~~~~~~~sp------DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~  362 (435)
T PRK05137        291 IDTSPSYSP------DGSQIVFESDRSGSPQLYVMNADGSNPRRISFG--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGV  362 (435)
T ss_pred             ccCceeEcC------CCCEEEEEECCCCCCeEEEEECCCCCeEEeecC--CCcccCeEECCCCCEEEEEEcCCCceEEEE
Confidence            456678998      9998877663 3  3688889877654332222  23456688999999998533111    100


Q ss_pred             Ce-eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC------CeEEEEecCCC
Q 025649          152 GK-RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND------KLVKVWDCSRF  200 (250)
Q Consensus       152 ~~-~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d------~~i~iwd~~~~  200 (250)
                      .. .......+. ....+....|+   |+|+.|+..+.+      ..+.++|+..+
T Consensus       363 ~d~~~~~~~~lt-~~~~~~~p~~s---pDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        363 MKPDGSGERILT-SGFLVEGPTWA---PNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             EECCCCceEecc-CCCCCCCCeEC---CCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            00 000011121 12245678899   899988765442      25778888664

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.7e-10  Score=88.37  Aligned_cols=126  Identities=13%  Similarity=0.117  Sum_probs=82.4

Q ss_pred             CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc----CeeeeeeccccCccccEEEEEeecCCCCC
Q 025649          105 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGERG  180 (250)
Q Consensus       105 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  180 (250)
                      .++++++++.......+  ...++|.++.|+|+++.++.+-..-...    .....++..+  ..++=+++-|+   |.|
T Consensus       251 q~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df--~egpRN~~~fn---p~g  323 (566)
T KOG2315|consen  251 QTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF--PEGPRNTAFFN---PHG  323 (566)
T ss_pred             ceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC--CCCCccceEEC---CCC
Confidence            46777777643333333  3348999999999999888532221111    1122233333  34566788999   899


Q ss_pred             cEEEEeeC---CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC------CceEEEEeC
Q 025649          181 KYLISGGN---DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT------SKVVKVYSI  249 (250)
Q Consensus       181 ~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------d~~i~vw~~  249 (250)
                      ++++.++-   -|.|-|||+.+.         +++.......  -+-..|+| ||++|+|+..      |+.++||++
T Consensus       324 ~ii~lAGFGNL~G~mEvwDv~n~---------K~i~~~~a~~--tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  324 NIILLAGFGNLPGDMEVWDVPNR---------KLIAKFKAAN--TTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             CEEEEeecCCCCCceEEEeccch---------hhccccccCC--ceEEEEcC-CCcEEEEEeccccEEecCCeEEEEe
Confidence            98887653   579999999996         4433333332  33468998 9999998774      678999986

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.5e-10  Score=91.29  Aligned_cols=189  Identities=8%  Similarity=0.019  Sum_probs=111.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      |.+||+.+++.. .+. .+.+...+.+|+|+|+.++++.+.+|  .|.+||+.+++......              +...
T Consensus       230 l~~~dl~~g~~~-~l~-~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~--------------~~~~  293 (433)
T PRK04922        230 IYVQDLATGQRE-LVA-SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN--------------HFGI  293 (433)
T ss_pred             EEEEECCCCCEE-Eec-cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc--------------CCCC
Confidence            678999877653 333 34555568899999984445666555  59999998776433221              1233


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeC-CCe--EEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----e--c
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKG-DGV--VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----Q--S  150 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~-d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~  150 (250)
                      ....+|+|      +++.|+..+. +|.  |.++|+.+++.......  .......+|+|+|+.++.....+    .  .
T Consensus       294 ~~~~~~sp------DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~  365 (433)
T PRK04922        294 DTEPTWAP------DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSGGQYRIAVM  365 (433)
T ss_pred             ccceEECC------CCCEEEEEECCCCCceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence            45678998      9998877663 444  66677766654322211  13345689999999988432211    1  1


Q ss_pred             cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC---CeEEEEecCCCcceecccccceeeeeeccCCceeEEEe
Q 025649          151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT  227 (250)
Q Consensus       151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  227 (250)
                      +....+. ..+. +........|+   |+|++++..+.+   +.|.++++...          ....+..+.+.+...+|
T Consensus       366 d~~~g~~-~~Lt-~~~~~~~p~~s---pdG~~i~~~s~~~g~~~L~~~~~~g~----------~~~~l~~~~g~~~~p~w  430 (433)
T PRK04922        366 DLSTGSV-RTLT-PGSLDESPSFA---PNGSMVLYATREGGRGVLAAVSTDGR----------VRQRLVSADGEVREPAW  430 (433)
T ss_pred             ECCCCCe-EECC-CCCCCCCceEC---CCCCEEEEEEecCCceEEEEEECCCC----------ceEEcccCCCCCCCCcc
Confidence            1111111 1222 22234456888   899988776653   36778888653          22233344555666677


Q ss_pred             cC
Q 025649          228 TP  229 (250)
Q Consensus       228 ~~  229 (250)
                      +|
T Consensus       431 sp  432 (433)
T PRK04922        431 SP  432 (433)
T ss_pred             CC
Confidence            65

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.35  E-value=1e-08  Score=77.26  Aligned_cols=220  Identities=11%  Similarity=0.017  Sum_probs=133.6

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec---------CCCeEEEEEccCCCCccceecCCCCCCCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG---------LDSKLVMWDFSKGRPNKIVNFGLPENNGNA   71 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~   71 (250)
                      +|.+.|..+++.+..+..|....  .+ ++||++.+.++.+         .+..|.+||+.+.+.+..+..+...   ..
T Consensus        28 ~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p---~~  101 (352)
T TIGR02658        28 QVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP---RF  101 (352)
T ss_pred             eEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc---hh
Confidence            47899999999999998333333  35 9999995555556         6889999999999999888755100   00


Q ss_pred             CcccCCCceeEEecCCCcccCCCCCEEEEEe-C-CCeEEEEeCCCceeEeeccCCCCCCc------cceeecc-------
Q 025649           72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAK-G-DGVVDVINIESELNISRSKSTTKPLK------GSQSTSK-------  136 (250)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~-d~~i~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~-------  136 (250)
                      .   ....-..++++|      +|++|++.. . ++.|.+.|+.+++.+.++..+....+      ..+..+.       
T Consensus       102 ~---~~~~~~~~~ls~------dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v  172 (352)
T TIGR02658       102 L---VGTYPWMTSLTP------DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKV  172 (352)
T ss_pred             h---ccCccceEEECC------CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEE
Confidence            0   012234678888      999998775 3 78999999999876665543321111      0111122       


Q ss_pred             --------------------------------cceeEEE-----eeeeeecc--CeeeeeeccccC-------ccccEEE
Q 025649          137 --------------------------------VNIRDAE-----MEILDQSG--GKRLHLDYSVGG-------HTAAASC  170 (250)
Q Consensus       137 --------------------------------~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~-------h~~~v~~  170 (250)
                                                      +|+++..     +...|...  ....+....+..       ..+.+.-
T Consensus       173 ~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~  252 (352)
T TIGR02658       173 GYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ  252 (352)
T ss_pred             EecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence                                            3333321     11111100  001111111110       1223344


Q ss_pred             EEeecCCCCCcEEEEee----------CCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC-eEEEee
Q 025649          171 VAFSMFGERGKYLISGG----------NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCD  239 (250)
Q Consensus       171 ~~~~p~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~  239 (250)
                      ++++   ++++.+....          ..+.|.++|.+++         +.+.. ..-...+..++++| |++ +|++..
T Consensus       253 ia~~---~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---------kvi~~-i~vG~~~~~iavS~-Dgkp~lyvtn  318 (352)
T TIGR02658       253 VAYH---RARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---------KRLRK-IELGHEIDSINVSQ-DAKPLLYALS  318 (352)
T ss_pred             EEEc---CCCCEEEEEecCCccccccCCCCEEEEEECCCC---------eEEEE-EeCCCceeeEEECC-CCCeEEEEeC
Confidence            8888   7877776632          1257999999997         33333 23456889999998 788 777655


Q ss_pred             -CCceEEEEeC
Q 025649          240 -TSKVVKVYSI  249 (250)
Q Consensus       240 -~d~~i~vw~~  249 (250)
                       .++.|.+.|.
T Consensus       319 ~~s~~VsViD~  329 (352)
T TIGR02658       319 TGDKTLYIFDA  329 (352)
T ss_pred             CCCCcEEEEEC
Confidence             6788999986

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=1.1e-09  Score=86.50  Aligned_cols=207  Identities=11%  Similarity=0.003  Sum_probs=113.7

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC-CC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL-DS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |.++|..... .+.+. .+...+.+..|+|||+ .|+..+. ++  .|.+||+.+++.......              +.
T Consensus       200 l~i~d~dG~~-~~~l~-~~~~~~~~p~wSPDG~-~La~~s~~~g~~~L~~~dl~tg~~~~lt~~--------------~g  262 (448)
T PRK04792        200 LMIADYDGYN-EQMLL-RSPEPLMSPAWSPDGR-KLAYVSFENRKAEIFVQDIYTQVREKVTSF--------------PG  262 (448)
T ss_pred             EEEEeCCCCC-ceEee-cCCCcccCceECCCCC-EEEEEEecCCCcEEEEEECCCCCeEEecCC--------------CC
Confidence            3445654332 23444 5667888999999999 5655433 33  588889887764322211              12


Q ss_pred             ceeEEecCCCcccCCCCCEEEE-EeCCCe--EEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----c
Q 025649           79 FVHAIAIPDADMLDKTNKICVV-AKGDGV--VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----G  151 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~-~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  151 (250)
                      .....+|+|      +++.|+. .+.++.  |.++|+.+++.......  ........|+|||+.++.....+..    .
T Consensus       263 ~~~~~~wSP------DG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~--~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~  334 (448)
T PRK04792        263 INGAPRFSP------DGKKLALVLSKDGQPEIYVVDIATKALTRITRH--RAIDTEPSWHPDGKSLIFTSERGGKPQIYR  334 (448)
T ss_pred             CcCCeeECC------CCCEEEEEEeCCCCeEEEEEECCCCCeEECccC--CCCccceEECCCCCEEEEEECCCCCceEEE
Confidence            234678998      8987765 455664  77888887764432221  2455678999999988743221111    0


Q ss_pred             --CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeC-CC--eEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649          152 --GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DK--LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC  226 (250)
Q Consensus       152 --~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (250)
                        ....+ ...+..........+|+   |+|++++..+. ++  .|.++|+.++...          .+... .......
T Consensus       335 ~dl~~g~-~~~Lt~~g~~~~~~~~S---pDG~~l~~~~~~~g~~~I~~~dl~~g~~~----------~lt~~-~~d~~ps  399 (448)
T PRK04792        335 VNLASGK-VSRLTFEGEQNLGGSIT---PDGRSMIMVNRTNGKFNIARQDLETGAMQ----------VLTST-RLDESPS  399 (448)
T ss_pred             EECCCCC-EEEEecCCCCCcCeeEC---CCCCEEEEEEecCCceEEEEEECCCCCeE----------EccCC-CCCCCce
Confidence              00011 01111111222346788   89988877654 34  4566787775321          11111 1112346


Q ss_pred             ecCCCCCeEEEee-CCce--EEEEeC
Q 025649          227 TTPTESENLVVCD-TSKV--VKVYSI  249 (250)
Q Consensus       227 ~~~~~~~~l~s~~-~d~~--i~vw~~  249 (250)
                      |+| ||+.|+..+ .++.  +.+++.
T Consensus       400 ~sp-dG~~I~~~~~~~g~~~l~~~~~  424 (448)
T PRK04792        400 VAP-NGTMVIYSTTYQGKQVLAAVSI  424 (448)
T ss_pred             ECC-CCCEEEEEEecCCceEEEEEEC
Confidence            887 777665544 4443  555543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.29  E-value=6.5e-10  Score=85.66  Aligned_cols=134  Identities=19%  Similarity=0.233  Sum_probs=112.9

Q ss_pred             cEEEEcccceeeeeec-cCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            2 WQIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      |.+|++..|+...++. ..|.+.|.++.++.+-. .|.|++.|+.+..|+....+.++.++..             +..+
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~-------------~~~~  147 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQ-------------KPLV  147 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccC-------------CCcc
Confidence            6788888999988887 57999999999998877 8999999999999999999988888855             6678


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeecc
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS  160 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (250)
                      .++.++|      |++.+++++  ++|++||+++++                                        .+..
T Consensus       148 ~sl~is~------D~~~l~~as--~~ik~~~~~~ke----------------------------------------vv~~  179 (541)
T KOG4547|consen  148 SSLCISP------DGKILLTAS--RQIKVLDIETKE----------------------------------------VVIT  179 (541)
T ss_pred             ceEEEcC------CCCEEEecc--ceEEEEEccCce----------------------------------------EEEE
Confidence            8999999      999999987  689999999765                                        4557


Q ss_pred             ccCccccEEEEEeecCCCC-----CcEEEEe-eCCCeEEEEecCCC
Q 025649          161 VGGHTAAASCVAFSMFGER-----GKYLISG-GNDKLVKVWDCSRF  200 (250)
Q Consensus       161 ~~~h~~~v~~~~~~p~~~~-----~~~l~s~-~~d~~i~iwd~~~~  200 (250)
                      |.+|.++|.+++|-   .+     |.+++++ ..+..+.+|-....
T Consensus       180 ftgh~s~v~t~~f~---~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  180 FTGHGSPVRTLSFT---TLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             ecCCCcceEEEEEE---EeccccccceeeeccccccceeEEEEEcc
Confidence            89999999999997   55     6666654 45777888877653

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.29  E-value=7.6e-11  Score=83.46  Aligned_cols=141  Identities=12%  Similarity=0.076  Sum_probs=99.0

Q ss_pred             eeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC--ccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           24 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        24 v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      ..++.|++.+. .++++..+|.+.+-+......  ++.++.             |.-.++...|+.     .+.+++.+|
T Consensus       124 ~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~wk~-------------He~E~Wta~f~~-----~~pnlvytG  184 (339)
T KOG0280|consen  124 ALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTWKV-------------HEFEAWTAKFSD-----KEPNLVYTG  184 (339)
T ss_pred             eeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccccc-------------cceeeeeeeccc-----CCCceEEec
Confidence            34677888888 688888889888555443322  224442             355667777765     467899999


Q ss_pred             eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCc
Q 025649          102 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK  181 (250)
Q Consensus       102 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  181 (250)
                      +.|+.++.||++.....                                      ..+..+-|...|.++.-+|  |.+.
T Consensus       185 gDD~~l~~~D~R~p~~~--------------------------------------i~~n~kvH~~GV~SI~ss~--~~~~  224 (339)
T KOG0280|consen  185 GDDGSLSCWDIRIPKTF--------------------------------------IWHNSKVHTSGVVSIYSSP--PKPT  224 (339)
T ss_pred             CCCceEEEEEecCCcce--------------------------------------eeecceeeecceEEEecCC--CCCc
Confidence            99999999999832100                                      0112355888999999998  7889


Q ss_pred             EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649          182 YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES  232 (250)
Q Consensus       182 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (250)
                      +++||+.|-.|++||.++..+        ++ .-..-.+.|+.+.++|...
T Consensus       225 ~I~TGsYDe~i~~~DtRnm~k--------Pl-~~~~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  225 YIATGSYDECIRVLDTRNMGK--------PL-FKAKVGGGVWRIKHHPEIF  266 (339)
T ss_pred             eEEEeccccceeeeehhcccC--------cc-ccCccccceEEEEecchhh
Confidence            999999999999999997532        22 1123337788888887443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=1.4e-09  Score=85.69  Aligned_cols=151  Identities=10%  Similarity=-0.067  Sum_probs=92.5

Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCC---CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----  149 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  149 (250)
                      ...+.+.+|+|      +++.|+..+.+   ..|.+||+.+++.......  ........|+|||+.++.....+.    
T Consensus       195 ~~~v~~p~wSP------DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~--~g~~~~~~~SPDG~~la~~~~~~g~~~I  266 (427)
T PRK02889        195 PEPIISPAWSP------DGTKLAYVSFESKKPVVYVHDLATGRRRVVANF--KGSNSAPAWSPDGRTLAVALSRDGNSQI  266 (427)
T ss_pred             CCCcccceEcC------CCCEEEEEEccCCCcEEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEEccCCCceE
Confidence            46678899999      99988877643   4699999998865433222  245568899999998874322221    


Q ss_pred             ccCe-eeeeeccccCccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecC--CCcceecccccceeeeeeccCCceeEE
Q 025649          150 SGGK-RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCS--RFQGVQTSINNDLLIKNINLNKKVNWL  225 (250)
Q Consensus       150 ~~~~-~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (250)
                      +... .......+..+........|+   |+|+.|+..+. +|...+|.+.  ++..       +.   ...........
T Consensus       267 y~~d~~~~~~~~lt~~~~~~~~~~wS---pDG~~l~f~s~~~g~~~Iy~~~~~~g~~-------~~---lt~~g~~~~~~  333 (427)
T PRK02889        267 YTVNADGSGLRRLTQSSGIDTEPFFS---PDGRSIYFTSDRGGAPQIYRMPASGGAA-------QR---VTFTGSYNTSP  333 (427)
T ss_pred             EEEECCCCCcEECCCCCCCCcCeEEc---CCCCEEEEEecCCCCcEEEEEECCCCce-------EE---EecCCCCcCce
Confidence            1110 011123344444455677899   89998876654 4666666554  3311       11   11122223456


Q ss_pred             EecCCCCCeEEEeeCCc---eEEEEeC
Q 025649          226 CTTPTESENLVVCDTSK---VVKVYSI  249 (250)
Q Consensus       226 ~~~~~~~~~l~s~~~d~---~i~vw~~  249 (250)
                      .|+| ||++|+..+.++   .|.+||+
T Consensus       334 ~~Sp-DG~~Ia~~s~~~g~~~I~v~d~  359 (427)
T PRK02889        334 RISP-DGKLLAYISRVGGAFKLYVQDL  359 (427)
T ss_pred             EECC-CCCEEEEEEccCCcEEEEEEEC
Confidence            7887 888888766543   6899986

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.25  E-value=3.2e-11  Score=61.09  Aligned_cols=39  Identities=31%  Similarity=0.489  Sum_probs=36.8

Q ss_pred             ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEE
Q 025649           10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWD   50 (250)
Q Consensus        10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd   50 (250)
                      ++++.+++ +|.+.|++|+|+|++. +|++|+.|+.|++||
T Consensus         1 g~~~~~~~-~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFR-GHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEE-SSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             CeEEEEEc-CCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            46788999 9999999999999998 899999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.24  E-value=3.1e-10  Score=82.20  Aligned_cols=211  Identities=11%  Similarity=0.093  Sum_probs=126.4

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC-----ccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-----NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT   94 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (250)
                      -.+-|.++.|...|. +|++|..+|.|.++.-.....     ...++.+.+ ..+....+.-...|..+.|.+    +.+
T Consensus        24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshep-EFDYLkSleieEKinkIrw~~----~~n   97 (433)
T KOG1354|consen   24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEP-EFDYLKSLEIEEKINKIRWLD----DGN   97 (433)
T ss_pred             hhcceeeEEeecccc-eEeecCCCCeEEEeecccccccceeeeeeeeccCc-ccchhhhhhhhhhhhhceecC----CCC
Confidence            346789999999999 999999999999997543221     111211100 111122222345677888876    234


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeEeecc-CC---CCCCccceeecccceeEEEeeeeeeccCeeeeeeccc-cCccccEE
Q 025649           95 NKICVVAKGDGVVDVINIESELNISRSK-ST---TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV-GGHTAAAS  169 (250)
Q Consensus        95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~  169 (250)
                      ...++....|.+|++|-+.......... .+   ....+.++..       ...+..+....  ..+.+.+ .+|...|.
T Consensus        98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~-------p~~~~~~~~ve--a~prRv~aNaHtyhiN  168 (433)
T KOG1354|consen   98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL-------PVEGRHDLEVE--ASPRRVYANAHTYHIN  168 (433)
T ss_pred             ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeec-------eeeccccceee--eeeeeeccccceeEee
Confidence            5677888899999999987643222100 00   0011111111       00111111111  1122233 46888999


Q ss_pred             EEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          170 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       170 ~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ++.++   .+++.++++. |=+|.+|++.-......+..-++ ..+......|++..|+|.....|+-.+..|+|++-|+
T Consensus       169 SIS~N---sD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm  243 (433)
T KOG1354|consen  169 SISVN---SDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKP-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM  243 (433)
T ss_pred             eeeec---CccceEeecc-ceeeeeccccccCCceeEEEccc-cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence            99999   8988888875 78999999876533211100010 1122334568889999988888888999999999998


Q ss_pred             C
Q 025649          250 S  250 (250)
Q Consensus       250 ~  250 (250)
                      +
T Consensus       244 R  244 (433)
T KOG1354|consen  244 R  244 (433)
T ss_pred             h
Confidence            5

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.19  E-value=9.9e-09  Score=80.98  Aligned_cols=169  Identities=9%  Similarity=0.002  Sum_probs=103.3

Q ss_pred             CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC---CeEEEEeCCCceeEee
Q 025649           44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISR  120 (250)
Q Consensus        44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~  120 (250)
                      ..|.++|...... ..+..             +...+.+..|+|      ++++|+.+..+   ..|++||+.+++....
T Consensus       170 ~~l~~~d~~g~~~-~~l~~-------------~~~~~~~p~~Sp------dg~~la~~~~~~~~~~i~v~d~~~g~~~~~  229 (417)
T TIGR02800       170 YELQVADYDGANP-QTITR-------------SREPILSPAWSP------DGQKLAYVSFESGKPEIYVQDLATGQREKV  229 (417)
T ss_pred             ceEEEEcCCCCCC-EEeec-------------CCCceecccCCC------CCCEEEEEEcCCCCcEEEEEECCCCCEEEe
Confidence            3577888753333 33321             234577888998      99999887643   4899999998754433


Q ss_pred             ccCCCCCCccceeecccceeEEEeeeee----ec--cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeC-CC--e
Q 025649          121 SKSTTKPLKGSQSTSKVNIRDAEMEILD----QS--GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DK--L  191 (250)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~--~  191 (250)
                      ...  ........|+|||+.++.....+    ..  ..... ....+..+........|+   |+|+.|+..+. ++  .
T Consensus       230 ~~~--~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~-~~~~l~~~~~~~~~~~~s---~dg~~l~~~s~~~g~~~  303 (417)
T TIGR02800       230 ASF--PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK-QLTRLTNGPGIDTEPSWS---PDGKSIAFTSDRGGSPQ  303 (417)
T ss_pred             ecC--CCCccceEECCCCCEEEEEECCCCCccEEEEECCCC-CEEECCCCCCCCCCEEEC---CCCCEEEEEECCCCCce
Confidence            222  24456789999998876432211    11  11111 112233343444567888   89988876654 33  5


Q ss_pred             EEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCc---eEEEEeC
Q 025649          192 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK---VVKVYSI  249 (250)
Q Consensus       192 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~vw~~  249 (250)
                      |+++|+.++.         . ..+..+...+....|+| ++++++.++.++   .|.+||+
T Consensus       304 iy~~d~~~~~---------~-~~l~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~  353 (417)
T TIGR02800       304 IYMMDADGGE---------V-RRLTFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDL  353 (417)
T ss_pred             EEEEECCCCC---------E-EEeecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeC
Confidence            7778877652         1 22333445566778987 888888877665   7888875

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.17  E-value=6.9e-10  Score=80.39  Aligned_cols=87  Identities=20%  Similarity=0.332  Sum_probs=71.2

Q ss_pred             ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649           10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD   89 (250)
Q Consensus        10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (250)
                      -.++.+++ +|.+.+.+++|.|... +|.+|..|..+.+||+.-.+-......+            |.+.|+.+...+  
T Consensus       187 ~~~i~~~~-~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~g------------h~~kV~~l~~~~--  250 (404)
T KOG1409|consen  187 CQLITTFN-GHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQG------------HNDKVQALSYAQ--  250 (404)
T ss_pred             CceEEEEc-CcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeecc------------chhhhhhhhhhh--
Confidence            34567788 9999999999999888 8999999999999999755444333333            677888887776  


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCce
Q 025649           90 MLDKTNKICVVAKGDGVVDVINIESEL  116 (250)
Q Consensus        90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~  116 (250)
                          .-+.+.+++.||.|.+||++...
T Consensus       251 ----~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  251 ----HTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             ----hheeeeeccCCCeEEEEecccee
Confidence                77899999999999999998643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.16  E-value=2.8e-10  Score=83.78  Aligned_cols=97  Identities=20%  Similarity=0.262  Sum_probs=79.9

Q ss_pred             EEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEE
Q 025649            4 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI   83 (250)
Q Consensus         4 iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   83 (250)
                      +|....+.+. .+- ||-+.++.++++||++ +|+++..|..|++-.....-.+..+-+|            |...|..+
T Consensus       136 i~s~~~~~~~-~~l-GhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclG------------H~eFVS~i  200 (390)
T KOG3914|consen  136 ILSADSGRCE-PIL-GHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLG------------HKEFVSTI  200 (390)
T ss_pred             eecccccCcc-hhh-hhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccc------------cHhheeee
Confidence            4444333332 334 8999999999999999 8999999999999988877777788777            89999999


Q ss_pred             ecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeecc
Q 025649           84 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK  122 (250)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  122 (250)
                      +..+       +..|++++.|++|++||+.+++.+....
T Consensus       201 sl~~-------~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  201 SLTD-------NYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eecc-------CceeeecCCCCcEEEEecccCCcccccc
Confidence            9985       7779999999999999999998775443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.15  E-value=1.3e-10  Score=92.06  Aligned_cols=185  Identities=17%  Similarity=0.209  Sum_probs=120.0

Q ss_pred             EEEcc---cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC-CccceecCCCCCCCCCCcccCCCc
Q 025649            4 IIDIR---QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         4 iwd~~---~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +|++.   ....-..+- ||...|+.+-|+|..+..+++++.|-.+..||+++.. ++..+..-             ...
T Consensus        95 iwnlA~ss~~aIef~lh-ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w-------------~s~  160 (1081)
T KOG0309|consen   95 IWNLAKSSSNAIEFVLH-GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW-------------RSA  160 (1081)
T ss_pred             hhhhhcCCccceEEEEe-cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc-------------ccc
Confidence            46554   222334455 9999999999999998799999999999999998754 33333211             233


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeec
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY  159 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (250)
                      ...+.|+-     .+++.+|+ +..+.|.+||++.+..                                       ++.
T Consensus       161 asqVkwny-----k~p~vlas-shg~~i~vwd~r~gs~---------------------------------------pl~  195 (1081)
T KOG0309|consen  161 ASQVKWNY-----KDPNVLAS-SHGNDIFVWDLRKGST---------------------------------------PLC  195 (1081)
T ss_pred             Cceeeecc-----cCcchhhh-ccCCceEEEeccCCCc---------------------------------------ceE
Confidence            45677765     35555554 5667899999997542                                       223


Q ss_pred             cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee-----------------------------------
Q 025649          160 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ-----------------------------------  204 (250)
Q Consensus       160 ~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----------------------------------  204 (250)
                      .+++|...|+.++|..  .....+.+.+.||+|+.||........                                   
T Consensus       196 s~K~~vs~vn~~~fnr--~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~  273 (1081)
T KOG0309|consen  196 SLKGHVSSVNSIDFNR--FKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQ  273 (1081)
T ss_pred             EecccceeeehHHHhh--hhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeee
Confidence            4455666666666652  123356666667777777665432210                                   


Q ss_pred             -----------cccccceeeeeeccCCceeEEEecCC---CC------CeEEEeeCCceEEEEeC
Q 025649          205 -----------TSINNDLLIKNINLNKKVNWLCTTPT---ES------ENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       205 -----------~~~~~~~~~~~~~~~~~v~~~~~~~~---~~------~~l~s~~~d~~i~vw~~  249 (250)
                                 ....+.++..+.+|...|....|-..   ++      -.|+|=+.|..+++|-+
T Consensus       274 ~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI  338 (1081)
T KOG0309|consen  274 LRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI  338 (1081)
T ss_pred             ccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence                       11234567788899988876655421   11      14899999999999975

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=8.2e-09  Score=81.72  Aligned_cols=189  Identities=10%  Similarity=-0.004  Sum_probs=104.8

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCe--EEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK--LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      |.+||+.+++.. .+. ...+.....+|+|+|+.++++.+.+|.  |.++|+.+++......              +...
T Consensus       244 L~~~dl~tg~~~-~lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~--------------~~~~  307 (448)
T PRK04792        244 IFVQDIYTQVRE-KVT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR--------------HRAI  307 (448)
T ss_pred             EEEEECCCCCeE-Eec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc--------------CCCC
Confidence            677888877653 233 223344578999999954455666775  7777887665432221              1234


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeC-CC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----c--
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKG-DG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----S--  150 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--  150 (250)
                      .....|+|      +++.|+..+. ++  .|.++|+.+++.......  ........|+|||+.++.......    .  
T Consensus       308 ~~~p~wSp------DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~  379 (448)
T PRK04792        308 DTEPSWHP------DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQ  379 (448)
T ss_pred             ccceEECC------CCCEEEEEECCCCCceEEEEECCCCCEEEEecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEE
Confidence            46678898      8887766553 33  566678877664332211  122345789999998875332111    0  


Q ss_pred             cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeC-CC--eEEEEecCCCcceecccccceeeeeeccCCceeEEEe
Q 025649          151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DK--LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT  227 (250)
Q Consensus       151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  227 (250)
                      +....+ ...+... .......|+   |+|+.|+..+. ++  .+.+++....          ....+..+.+.+...+|
T Consensus       380 dl~~g~-~~~lt~~-~~d~~ps~s---pdG~~I~~~~~~~g~~~l~~~~~~G~----------~~~~l~~~~g~~~~p~W  444 (448)
T PRK04792        380 DLETGA-MQVLTST-RLDESPSVA---PNGTMVIYSTTYQGKQVLAAVSIDGR----------FKARLPAGQGEVKSPAW  444 (448)
T ss_pred             ECCCCC-eEEccCC-CCCCCceEC---CCCCEEEEEEecCCceEEEEEECCCC----------ceEECcCCCCCcCCCcc
Confidence            001111 0111111 111234688   89988776554 33  3677776442          22333344455666677


Q ss_pred             cC
Q 025649          228 TP  229 (250)
Q Consensus       228 ~~  229 (250)
                      +|
T Consensus       445 sp  446 (448)
T PRK04792        445 SP  446 (448)
T ss_pred             CC
Confidence            76

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.13  E-value=4.5e-07  Score=69.62  Aligned_cols=218  Identities=15%  Similarity=0.106  Sum_probs=126.7

Q ss_pred             cEEEEc--ccceee--eeeccCCCCCeeeEEEcCCCCeEEEEecC----CCeEEEEEccCC--C--CccceecCCCCCCC
Q 025649            2 WQIIDI--RQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGL----DSKLVMWDFSKG--R--PNKIVNFGLPENNG   69 (250)
Q Consensus         2 i~iwd~--~~~~~~--~~l~~~h~~~v~~l~~~~~~~~~l~s~s~----dg~v~iwd~~~~--~--~~~~~~~~~~~~~~   69 (250)
                      |.+|++  +++++.  ..+.  -......|+++|+++ +|.+...    ++.|..|++...  +  .+......      
T Consensus        15 I~~~~~d~~~g~l~~~~~~~--~~~~Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~------   85 (345)
T PF10282_consen   15 IYVFRFDEETGTLTLVQTVA--EGENPSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSG------   85 (345)
T ss_dssp             EEEEEEETTTTEEEEEEEEE--ESSSECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEES------
T ss_pred             EEEEEEcCCCCCceEeeeec--CCCCCceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCcceeEEeeeeccC------
Confidence            455555  555543  2222  345567899999999 6666544    689999998764  2  22222211      


Q ss_pred             CCCcccCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCC-ceeEee---cc---------CCCCCCccceeec
Q 025649           70 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES-ELNISR---SK---------STTKPLKGSQSTS  135 (250)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~~---~~---------~~~~~~~~~~~~~  135 (250)
                             ......++++|      ++++|+++. .+|.|.++++.. +.....   ..         ........++.++
T Consensus        86 -------g~~p~~i~~~~------~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~  152 (345)
T PF10282_consen   86 -------GSSPCHIAVDP------DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS  152 (345)
T ss_dssp             -------SSCEEEEEECT------TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred             -------CCCcEEEEEec------CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence                   23345688888      899888886 589999999987 333222   11         1223556789999


Q ss_pred             ccceeEEEee-------eeeeccCe-eeeeecccc-CccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecC--CCcce
Q 025649          136 KVNIRDAEME-------ILDQSGGK-RLHLDYSVG-GHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCS--RFQGV  203 (250)
Q Consensus       136 ~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~--~~~~~  203 (250)
                      |+|++++...       .++..... .......+. ........++|+   |+++++.... .++.|.++++.  .+...
T Consensus       153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~---pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~  229 (345)
T PF10282_consen  153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS---PDGKYAYVVNELSNTVSVFDYDPSDGSLT  229 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE----TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc---CCcCEEEEecCCCCcEEEEeecccCCcee
Confidence            9999887421       12221111 121111111 223456899999   8988876665 47899999998  33111


Q ss_pred             ecccccceeeee---eccCCceeEEEecCCCCCeEEEee-CCceEEEEeC
Q 025649          204 QTSINNDLLIKN---INLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI  249 (250)
Q Consensus       204 ~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw~~  249 (250)
                      ..    ..+...   .........++++| ||++|+++. .++.|.+|++
T Consensus       230 ~~----~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~  274 (345)
T PF10282_consen  230 EI----QTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSISVFDL  274 (345)
T ss_dssp             EE----EEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEE
T ss_pred             EE----EEeeeccccccccCCceeEEEec-CCCEEEEEeccCCEEEEEEE
Confidence            00    111111   01112577888987 898887755 5678999886

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.12  E-value=1.1e-07  Score=67.66  Aligned_cols=202  Identities=7%  Similarity=-0.019  Sum_probs=111.4

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  102 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  102 (250)
                      .=..++||||+. +||.+...|+|+++|+. |..+..+....    .  ........|-++.|.+......-...|++-.
T Consensus        45 QWRkl~WSpD~t-lLa~a~S~G~i~vfdl~-g~~lf~I~p~~----~--~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~  116 (282)
T PF15492_consen   45 QWRKLAWSPDCT-LLAYAESTGTIRVFDLM-GSELFVIPPAM----S--FPGDLSDAIAGLIFLEYKKSAQWSYELLVIN  116 (282)
T ss_pred             hheEEEECCCCc-EEEEEcCCCeEEEEecc-cceeEEcCccc----c--cCCccccceeeeEeeccccccccceeEEEEe
Confidence            446899999999 99999999999999996 34444444220    0  0011234566666654211001134667777


Q ss_pred             CCCeEEEEeCCCc-----eeE--eeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeec
Q 025649          103 GDGVVDVINIESE-----LNI--SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM  175 (250)
Q Consensus       103 ~d~~i~~~d~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  175 (250)
                      .+|.++-|-+..+     +..  ..+.......+.++.++|..++++ ++.........      -.+....+++=..--
T Consensus       117 Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLl-VgG~~~~~~~~------s~a~~~GLtaWRiL~  189 (282)
T PF15492_consen  117 YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLL-VGGCEQNQDGM------SKASSCGLTAWRILS  189 (282)
T ss_pred             ccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEE-EeccCCCCCcc------ccccccCceEEEEcC
Confidence            8888887765321     111  223334456888888999888777 33332221100      011122333322220


Q ss_pred             CCCCCcEEEEeeCCCe------EEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          176 FGERGKYLISGGNDKL------VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       176 ~~~~~~~l~s~~~d~~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      -.|.... ++...|+.      -.+|.+-+.         ............|..|..+| ||+.|++...+|.|.+|++
T Consensus       190 ~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~---------~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  190 DSPYYKQ-VTSSEDDITASSKRRGLLRIPSF---------KFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEI  258 (282)
T ss_pred             CCCcEEE-ccccCccccccccccceeeccce---------eeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEec
Confidence            0011111 12222221      123333322         12122233456799999998 9999999999999999997


Q ss_pred             C
Q 025649          250 S  250 (250)
Q Consensus       250 ~  250 (250)
                      +
T Consensus       259 P  259 (282)
T PF15492_consen  259 P  259 (282)
T ss_pred             C
Confidence            5

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.12  E-value=2.4e-09  Score=79.02  Aligned_cols=141  Identities=13%  Similarity=0.113  Sum_probs=93.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCcee----EeeccCCCCCCccceeecccceeE-EE-----eeeeeeccCeeeeeeccccC
Q 025649           94 TNKICVVAKGDGVVDVINIESELN----ISRSKSTTKPLKGSQSTSKVNIRD-AE-----MEILDQSGGKRLHLDYSVGG  163 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~  163 (250)
                      +++++|++..+....+++......    ......+  .....+.+..+.... +.     ....+...... .+...+-|
T Consensus        73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~--~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~~~~~lG  149 (390)
T KOG3914|consen   73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP--KRPTAISFIREDTSVLVADKAGDVYSFDILSADS-GRCEPILG  149 (390)
T ss_pred             CceEEEEEeCCCceEEEEEecCCCcceeeeEeecc--cCcceeeeeeccceEEEEeecCCceeeeeecccc-cCcchhhh
Confidence            889999998888887887765332    1111111  222333333322222 11     11222222221 23345568


Q ss_pred             ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCce
Q 025649          164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV  243 (250)
Q Consensus       164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  243 (250)
                      |-..++.|+++   ||+++++++..|..|++-.+....        ..-....+|...|..++..  +++.|++||.|++
T Consensus       150 hvSml~dVavS---~D~~~IitaDRDEkIRvs~ypa~f--------~IesfclGH~eFVS~isl~--~~~~LlS~sGD~t  216 (390)
T KOG3914|consen  150 HVSMLLDVAVS---PDDQFIITADRDEKIRVSRYPATF--------VIESFCLGHKEFVSTISLT--DNYLLLSGSGDKT  216 (390)
T ss_pred             hhhhhheeeec---CCCCEEEEecCCceEEEEecCccc--------chhhhccccHhheeeeeec--cCceeeecCCCCc
Confidence            99999999999   899999999999999998877642        1222446899999999986  4567999999999


Q ss_pred             EEEEeCC
Q 025649          244 VKVYSIS  250 (250)
Q Consensus       244 i~vw~~~  250 (250)
                      +++||+.
T Consensus       217 lr~Wd~~  223 (390)
T KOG3914|consen  217 LRLWDIT  223 (390)
T ss_pred             EEEEecc
Confidence            9999974

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=1.2e-08  Score=80.67  Aligned_cols=189  Identities=8%  Similarity=0.009  Sum_probs=106.1

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      |.+||+.+++.. .+. ...+.+...+|+|+|+.++++.+.+|  .|.+||+.+++... +. .            +...
T Consensus       225 l~~~~l~~g~~~-~l~-~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt-~------------~~~~  288 (430)
T PRK00178        225 IFVQNLDTGRRE-QIT-NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VT-N------------HPAI  288 (430)
T ss_pred             EEEEECCCCCEE-Ecc-CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cc-c------------CCCC
Confidence            677888877653 333 33445567899999984444665555  58888988765432 22 1            1233


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeC-C--CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----c--
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKG-D--GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----S--  150 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--  150 (250)
                      .....|+|      +++.|+..+. +  ..|.++|+.+++.......  ........|+|+|+.++.....+.    .  
T Consensus       289 ~~~~~~sp------Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~  360 (430)
T PRK00178        289 DTEPFWGK------DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQ  360 (430)
T ss_pred             cCCeEECC------CCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEEccCCceEEEEE
Confidence            45677888      8887766553 3  3577778877664332211  123445789999999875332111    0  


Q ss_pred             cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC---CeEEEEecCCCcceecccccceeeeeeccCCceeEEEe
Q 025649          151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT  227 (250)
Q Consensus       151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  227 (250)
                      +....+ ...+. +........|+   |+|+.++..+.+   ..|.+.++...          ....+..+.+.+...+|
T Consensus       361 dl~tg~-~~~lt-~~~~~~~p~~s---pdg~~i~~~~~~~g~~~l~~~~~~g~----------~~~~l~~~~g~~~~p~w  425 (430)
T PRK00178        361 DLQRGS-VRILT-DTSLDESPSVA---PNGTMLIYATRQQGRGVLMLVSINGR----------VRLPLPTAQGEVREPSW  425 (430)
T ss_pred             ECCCCC-EEEcc-CCCCCCCceEC---CCCCEEEEEEecCCceEEEEEECCCC----------ceEECcCCCCCcCCCcc
Confidence            111111 01111 11112245788   899988776643   34667777543          11222334445666667


Q ss_pred             cC
Q 025649          228 TP  229 (250)
Q Consensus       228 ~~  229 (250)
                      +|
T Consensus       426 s~  427 (430)
T PRK00178        426 SP  427 (430)
T ss_pred             CC
Confidence            65

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.12  E-value=1.8e-10  Score=88.75  Aligned_cols=163  Identities=12%  Similarity=0.139  Sum_probs=107.1

Q ss_pred             eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CC------CccceecCCCCCCCCCCcccCCCceeEEec
Q 025649           13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GR------PNKIVNFGLPENNGNAGQCYNPAFVHAIAI   85 (250)
Q Consensus        13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   85 (250)
                      ++.+. ||...|..++--.+.. -+++++.|.+|++|.++. +.      +..+++             .|...|+++.|
T Consensus       728 L~nf~-GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-------------aHkk~i~~igf  792 (1034)
T KOG4190|consen  728 LCNFT-GHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-------------AHKKPIHDIGF  792 (1034)
T ss_pred             eeccc-CcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhh-------------hccCcccceee
Confidence            45677 9999999988666665 699999999999999863 21      222332             36889999999


Q ss_pred             CCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeecc-CCCCCCccceeeccc-ceeEEEee--------eeeeccCeee
Q 025649           86 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK-STTKPLKGSQSTSKV-NIRDAEME--------ILDQSGGKRL  155 (250)
Q Consensus        86 ~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~  155 (250)
                      -.      +.+++++  .||.|++||.--++.+.... .+.......+..-++ .+.++..+        ..|.+..+-.
T Consensus       793 L~------~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~  864 (1034)
T KOG4190|consen  793 LA------DLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT  864 (1034)
T ss_pred             ee------ccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce
Confidence            87      6777765  47899999988777665332 222233333333333 22222122        2222222111


Q ss_pred             e--eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649          156 H--LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  201 (250)
Q Consensus       156 ~--~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~  201 (250)
                      -  .+..-.+...-+.+++..   +.|+.++.+-..|+|.+-|.++++
T Consensus       865 ~E~kVcna~~Pna~~R~iaVa---~~GN~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  865 CELKVCNAPGPNALTRAIAVA---DKGNKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             eeEEeccCCCCchheeEEEec---cCcchhhHHhcCCcEEEEecCCCc
Confidence            1  112223455678899998   899999999999999999999984

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.12  E-value=3.9e-10  Score=57.02  Aligned_cols=38  Identities=32%  Similarity=0.686  Sum_probs=35.4

Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEe
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  196 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd  196 (250)
                      +++..+.+|.+.|++++|+   |++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~---~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWS---PDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEE---TTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEe---cccccceeeCCCCEEEEEC
Confidence            4567899999999999999   8899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.10  E-value=1.9e-07  Score=79.61  Aligned_cols=206  Identities=16%  Similarity=0.105  Sum_probs=130.5

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecC----------------------CCCCCC---------
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG----------------------LPENNG---------   69 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----------------------~~~~~~---------   69 (250)
                      ...|.+++||||++ +|+..+.+++|.+-+- +.+++......                      ....+.         
T Consensus       120 d~GI~a~~WSPD~E-lla~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  120 DSGILAASWSPDEE-LLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             cCcEEEEEECCCcC-EEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            46899999999999 8998888888887643 22222211111                      000000         


Q ss_pred             -----CCCcccCCCceeEEecCCCcccCCCCCEEEEEeC---C---CeEEEEeCCCceeEeeccCCCCCCccceeecccc
Q 025649           70 -----NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---D---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVN  138 (250)
Q Consensus        70 -----~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~---d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (250)
                           ..... ..+.-..++|..      ||.++|+.+-   .   ..+++|+-+ |......+ +..+.-..++|.|.|
T Consensus       198 ~~~~d~~~~s-~dd~~~~ISWRG------DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG  268 (928)
T PF04762_consen  198 VPKVDEGKLS-WDDGRVRISWRG------DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSG  268 (928)
T ss_pred             CCccccCccc-cCCCceEEEECC------CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCC
Confidence                 00111 233455677887      9999999874   2   579999987 55444443 444667789999999


Q ss_pred             eeEEEeeeeeec---------cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccc
Q 025649          139 IRDAEMEILDQS---------GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN  209 (250)
Q Consensus       139 ~~~~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  209 (250)
                      ++++++......         ..+..+..-.+......|..+.|+   +++..||..-.|. |.+|-..+..        
T Consensus       269 ~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn---~ds~iLAv~~~~~-vqLWt~~NYH--------  336 (928)
T PF04762_consen  269 NLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWN---SDSEILAVWLEDR-VQLWTRSNYH--------  336 (928)
T ss_pred             CEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEEC---CCCCEEEEEecCC-ceEEEeeCCE--------
Confidence            999965531111         111122112223455679999999   8999999977655 9999988863        


Q ss_pred             ceeeeeec--cCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          210 DLLIKNIN--LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       210 ~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ..++....  ....+..+.|+|.+...|.....+|.+..+++
T Consensus       337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            22222222  22335558999988888888887777776653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.07  E-value=4.5e-09  Score=76.33  Aligned_cols=169  Identities=12%  Similarity=0.161  Sum_probs=108.5

Q ss_pred             eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649           14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD   92 (250)
Q Consensus        14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   92 (250)
                      +.+.++|+-.|++|+++.|.+ .++++ +|=.|.+|+++-. +........ |.     ...--..-|++..|+|     
T Consensus       157 Rv~aNaHtyhiNSIS~NsD~E-t~lSA-DdLRINLWnlei~d~sFnIVDIK-P~-----nmEeLteVITsaEFhp-----  223 (433)
T KOG1354|consen  157 RVYANAHTYHINSISVNSDKE-TFLSA-DDLRINLWNLEIIDQSFNIVDIK-PA-----NMEELTEVITSAEFHP-----  223 (433)
T ss_pred             eeccccceeEeeeeeecCccc-eEeec-cceeeeeccccccCCceeEEEcc-cc-----CHHHHHHHHhhhccCH-----
Confidence            344458999999999999998 56665 4678999998632 322222211 00     0000123467778888     


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeE----eeccCCC-----------CCCccceeecccceeEEE-----eeeeeecc-
Q 025649           93 KTNKICVVAKGDGVVDVINIESELNI----SRSKSTT-----------KPLKGSQSTSKVNIRDAE-----MEILDQSG-  151 (250)
Q Consensus        93 ~~~~~l~~~~~d~~i~~~d~~~~~~~----~~~~~~~-----------~~~~~~~~~~~~~~~~~~-----~~~~~~~~-  151 (250)
                      ...+.++-.+..|+|++.|++.....    ..+..+.           -..|..+.|+++|+++++     +..||... 
T Consensus       224 ~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme  303 (433)
T KOG1354|consen  224 HHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNME  303 (433)
T ss_pred             hHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecccc
Confidence            56788888889999999999953211    1111111           135777899999999985     66777743 


Q ss_pred             CeeeeeeccccCcc------------ccE---EEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649          152 GKRLHLDYSVGGHT------------AAA---SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  201 (250)
Q Consensus       152 ~~~~~~~~~~~~h~------------~~v---~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~  201 (250)
                      ..+.   .+++-|.            ..|   ..+.|+   -++.+++||+.....++++...+.
T Consensus       304 ~~pv---~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s---g~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  304 AKPV---ETYPVHEYLRSKLCSLYENDAIFDKFECSWS---GNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             CCcc---eEEeehHhHHHHHHHHhhccchhheeEEEEc---CCcceEecccccceEEEecCCCCc
Confidence            2222   2222221            112   356777   778899999999999999966553

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.07  E-value=1.2e-06  Score=64.46  Aligned_cols=209  Identities=11%  Similarity=0.082  Sum_probs=129.1

Q ss_pred             CeeeEEEcCCCCeEEEEecC-CCeEEEEEccC-CCCccceecCC-CCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649           23 ICSSVQFIPWKPWEVISGGL-DSKLVMWDFSK-GRPNKIVNFGL-PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV   99 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~-dg~v~iwd~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~   99 (250)
                      +-..++++++++ +++++.. -|.|.++-++. |........-. ....++  ..-....++...+.|      ++++|+
T Consensus        90 ~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~--~rQ~~~h~H~a~~tP------~~~~l~  160 (346)
T COG2706          90 PPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPH--ERQESPHVHSANFTP------DGRYLV  160 (346)
T ss_pred             CCeEEEECCCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCC--ccccCCccceeeeCC------CCCEEE
Confidence            337899999999 6666654 58999999965 44332222110 000000  000122378888998      999988


Q ss_pred             EEe-CCCeEEEEeCCCceeEee--ccCCCCCCccceeecccceeEEEeeeeee-------cc-C---eeeeeeccccC--
Q 025649          100 VAK-GDGVVDVINIESELNISR--SKSTTKPLKGSQSTSKVNIRDAEMEILDQ-------SG-G---KRLHLDYSVGG--  163 (250)
Q Consensus       100 ~~~-~d~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~---~~~~~~~~~~~--  163 (250)
                      +.. .--.|.+|++..+.....  .........+.+.|+|++++...+.-.+.       .. .   +..+.+..++.  
T Consensus       161 v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF  240 (346)
T COG2706         161 VPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF  240 (346)
T ss_pred             EeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence            885 334689999998765432  22345578899999999998875332222       11 1   22233333321  


Q ss_pred             -ccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC-
Q 025649          164 -HTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT-  240 (250)
Q Consensus       164 -h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-  240 (250)
                       ...+...|..+   ++|++|.++.. ...|.+|.+.......     ........+........+.+ ++++|+++.. 
T Consensus       241 ~g~~~~aaIhis---~dGrFLYasNRg~dsI~~f~V~~~~g~L-----~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~  311 (346)
T COG2706         241 TGTNWAAAIHIS---PDGRFLYASNRGHDSIAVFSVDPDGGKL-----ELVGITPTEGQFPRDFNINP-SGRFLIAANQK  311 (346)
T ss_pred             CCCCceeEEEEC---CCCCEEEEecCCCCeEEEEEEcCCCCEE-----EEEEEeccCCcCCccceeCC-CCCEEEEEccC
Confidence             23456788888   89999998764 4488888776542211     33344445555677888887 7888877764 


Q ss_pred             CceEEEEeC
Q 025649          241 SKVVKVYSI  249 (250)
Q Consensus       241 d~~i~vw~~  249 (250)
                      +..|.+|.+
T Consensus       312 sd~i~vf~~  320 (346)
T COG2706         312 SDNITVFER  320 (346)
T ss_pred             CCcEEEEEE
Confidence            446777754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.06  E-value=1.5e-07  Score=71.61  Aligned_cols=117  Identities=10%  Similarity=0.012  Sum_probs=88.2

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      +-|+|..+++.. .+. ..-+.|.++..+|+|+ .++.+-....+.+.|+.+|.....-+.             ..+-|.
T Consensus       384 l~iyd~~~~e~k-r~e-~~lg~I~av~vs~dGK-~~vvaNdr~el~vididngnv~~idkS-------------~~~lIt  447 (668)
T COG4946         384 LGIYDKDGGEVK-RIE-KDLGNIEAVKVSPDGK-KVVVANDRFELWVIDIDNGNVRLIDKS-------------EYGLIT  447 (668)
T ss_pred             EEEEecCCceEE-Eee-CCccceEEEEEcCCCc-EEEEEcCceEEEEEEecCCCeeEeccc-------------ccceeE
Confidence            567888777764 555 5778999999999999 788888888999999998875433221             246789


Q ss_pred             EEecCCCcccCCCCCEEEEEeCC----CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE
Q 025649           82 AIAIPDADMLDKTNKICVVAKGD----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (250)
                      ..+|+|      +++++|-+--+    ..|+++|+.+++........  ..-.+-+|.|++++|.
T Consensus       448 df~~~~------nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t--a~DfsPaFD~d~ryLY  504 (668)
T COG4946         448 DFDWHP------NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT--AYDFSPAFDPDGRYLY  504 (668)
T ss_pred             EEEEcC------CceeEEEecCcceeeeeEEEEecCCCeEEEecCCc--ccccCcccCCCCcEEE
Confidence            999999      99999887554    47899999987755432221  3455678999998886

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.06  E-value=2.5e-07  Score=80.23  Aligned_cols=197  Identities=11%  Similarity=0.042  Sum_probs=109.4

Q ss_pred             eeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCC-CCC-CCCCCcccCCCceeEEecCCCcccCCCCC-EEEE
Q 025649           24 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL-PEN-NGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVV  100 (250)
Q Consensus        24 v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~  100 (250)
                      -..++++|++..++++.+.++.|++||..++... .+.... ... .........-.....++++|      +++ ++++
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp------dG~~LYVA  757 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP------DLKELYIA  757 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC------CCCEEEEE
Confidence            3579999954437788888999999999776432 221000 000 00000001113456788888      877 4455


Q ss_pred             EeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCC
Q 025649          101 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG  180 (250)
Q Consensus       101 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  180 (250)
                      -+.++.|++||+.++.........   ..    + ++.  +...+..+..   .      ....-.....++++   ++|
T Consensus       758 Ds~n~~Irv~D~~tg~~~~~~gg~---~~----~-~~~--l~~fG~~dG~---g------~~~~l~~P~Gvavd---~dG  815 (1057)
T PLN02919        758 DSESSSIRALDLKTGGSRLLAGGD---PT----F-SDN--LFKFGDHDGV---G------SEVLLQHPLGVLCA---KDG  815 (1057)
T ss_pred             ECCCCeEEEEECCCCcEEEEEecc---cc----c-Ccc--cccccCCCCc---h------hhhhccCCceeeEe---CCC
Confidence            567799999999875422110000   00    0 000  0000000000   0      00111224578899   899


Q ss_pred             cEEEEeeCCCeEEEEecCCCcceecccccce-e---eeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          181 KYLISGGNDKLVKVWDCSRFQGVQTSINNDL-L---IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       181 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +++++-+.+++|++||..++........... .   ....+.-..+..+++.+ +|+++++-+.++.|++||++
T Consensus       816 ~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        816 QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEECC
Confidence            9888888999999999988643211110000 0   00111223577888987 88888888889999999973

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.04  E-value=6.3e-08  Score=68.30  Aligned_cols=159  Identities=14%  Similarity=0.058  Sum_probs=105.3

Q ss_pred             eeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccc-eecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           24 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKI-VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        24 v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      +.+++++++++ .+++.+....|-.|.+... +.+.. ....            ..+.-.+..|+.      ....+|++
T Consensus       161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~------------t~D~gF~~S~s~------~~~~FAv~  221 (344)
T KOG4532|consen  161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAP------------TSDHGFYNSFSE------NDLQFAVV  221 (344)
T ss_pred             eeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecc------------cCCCceeeeecc------CcceEEEE
Confidence            88999999999 7888898899999998753 32222 2212            334556778887      88899999


Q ss_pred             eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCc
Q 025649          102 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK  181 (250)
Q Consensus       102 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  181 (250)
                      .+||++.+||++....+.....                                   .+-..|.+.+..+.|+|..+..-
T Consensus       222 ~Qdg~~~I~DVR~~~tpm~~~s-----------------------------------strp~hnGa~R~c~Fsl~g~lDL  266 (344)
T KOG4532|consen  222 FQDGTCAIYDVRNMATPMAEIS-----------------------------------STRPHHNGAFRVCRFSLYGLLDL  266 (344)
T ss_pred             ecCCcEEEEEecccccchhhhc-----------------------------------ccCCCCCCceEEEEecCCCcceE
Confidence            9999999999997543332222                                   12345899999999996544433


Q ss_pred             EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC-CceeEEEecCCCCCeEEEeeC
Q 025649          182 YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVCDT  240 (250)
Q Consensus       182 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~  240 (250)
                      ++++- .-+.+.+-|++++...+....++-  ....|. ..+..-.|+. ++..+.+.+.
T Consensus       267 Lf~sE-hfs~~hv~D~R~~~~~q~I~i~~d--~~~~~~tq~ifgt~f~~-~n~s~~v~~e  322 (344)
T KOG4532|consen  267 LFISE-HFSRVHVVDTRNYVNHQVIVIPDD--VERKHNTQHIFGTNFNN-ENESNDVKNE  322 (344)
T ss_pred             EEEec-CcceEEEEEcccCceeeEEecCcc--ccccccccccccccccC-CCcccccccc
Confidence            44443 457899999999876543222211  122333 3377777765 5554544443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=4e-08  Score=72.94  Aligned_cols=95  Identities=13%  Similarity=0.087  Sum_probs=78.3

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      +++.+..+.+...-+. +|...|.+++|+|....++..++.+..|+|.|+++...+..+..+              ..++
T Consensus       175 v~~l~~~~fkssq~lp-~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--------------~~~w  239 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILP-GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--------------NQIW  239 (463)
T ss_pred             eEEeccCCcchhhccc-ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--------------CCce
Confidence            3455555566666666 888999999999998778999999999999999998888777733              6789


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  116 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  116 (250)
                      +.+|.-     .+.++|..|..+|.|.+||++..+
T Consensus       240 SC~wDl-----de~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  240 SCCWDL-----DERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eeeecc-----CCcceeEEeccCceEEEEEccCCC
Confidence            999986     357789999999999999999743

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=1.8e-09  Score=78.41  Aligned_cols=130  Identities=15%  Similarity=0.175  Sum_probs=92.2

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV   99 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~   99 (250)
                      ..+.|.++.|...++ ++..|..+|.|...|++....         .........+|+..|+++..-.     .++.+|+
T Consensus       251 sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnq---------G~~~~a~rlyh~Ssvtslq~Lq-----~s~q~Lm  315 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQ---------GNGWCAQRLYHDSSVTSLQILQ-----FSQQKLM  315 (425)
T ss_pred             cchhHHHHHhcccCC-eeEecccCCcEEEEEeeeccc---------CCCcceEEEEcCcchhhhhhhc-----cccceEe
Confidence            456799999999888 899999999999999986411         0111122334788888887764     4788999


Q ss_pred             EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649          100 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER  179 (250)
Q Consensus       100 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  179 (250)
                      +.+.+|+|++||++.-+..                                     +-+.++.||.+.-.-+-+. ..+.
T Consensus       316 aS~M~gkikLyD~R~~K~~-------------------------------------~~V~qYeGHvN~~a~l~~~-v~~e  357 (425)
T KOG2695|consen  316 ASDMTGKIKLYDLRATKCK-------------------------------------KSVMQYEGHVNLSAYLPAH-VKEE  357 (425)
T ss_pred             eccCcCceeEeeehhhhcc-------------------------------------cceeeeecccccccccccc-cccc
Confidence            9999999999999963321                                     1234666775432222222 1255


Q ss_pred             CcEEEEeeCCCeEEEEecCCCcc
Q 025649          180 GKYLISGGNDKLVKVWDCSRFQG  202 (250)
Q Consensus       180 ~~~l~s~~~d~~i~iwd~~~~~~  202 (250)
                      ...+++++.|...+||.++.+..
T Consensus       358 eg~I~s~GdDcytRiWsl~~ghL  380 (425)
T KOG2695|consen  358 EGSIFSVGDDCYTRIWSLDSGHL  380 (425)
T ss_pred             cceEEEccCeeEEEEEecccCce
Confidence            66888899999999999999843

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.01  E-value=1e-06  Score=64.79  Aligned_cols=224  Identities=13%  Similarity=0.087  Sum_probs=127.3

Q ss_pred             cEEEEccc--ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC---CCeEEEEEccC--CCCccceecCCCCCCCCCCcc
Q 025649            2 WQIIDIRQ--HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---DSKLVMWDFSK--GRPNKIVNFGLPENNGNAGQC   74 (250)
Q Consensus         2 i~iwd~~~--~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~   74 (250)
                      |++|++.+  +++-..-...+.+..+-|+|+|+++ .|.++-.   +|.|..|.+..  |+....-+..         . 
T Consensus        18 I~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~-~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~---------~-   86 (346)
T COG2706          18 IYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQR-HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT---------L-   86 (346)
T ss_pred             eEEEEEeCcccccchhhhccccCCCceEEECCCCC-EEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc---------c-
Confidence            67888773  3322111125778899999999998 6776643   57788777764  4422111100         0 


Q ss_pred             cCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCC-ceeEe---eccCC--------CCCCccceeecccceeE
Q 025649           75 YNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES-ELNIS---RSKST--------TKPLKGSQSTSKVNIRD  141 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~---~~~~~--------~~~~~~~~~~~~~~~~~  141 (250)
                       ....-.-+++++      ++++++++. .-|.|.++-++. |....   .....        ...-+....++|+++++
T Consensus        87 -~g~~p~yvsvd~------~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l  159 (346)
T COG2706          87 -PGSPPCYVSVDE------DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYL  159 (346)
T ss_pred             -CCCCCeEEEECC------CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEE
Confidence             011226678887      899988886 458999999866 33221   11111        11226778899999999


Q ss_pred             EEe-------eeeeeccCeee-eeeccccCccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecCCCc-ceecccccce
Q 025649          142 AEM-------EILDQSGGKRL-HLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQ-GVQTSINNDL  211 (250)
Q Consensus       142 ~~~-------~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~-~~~~~~~~~~  211 (250)
                      ++.       ..++..++.-. .....+ ........+.|+   |++++....++ +++|.+|...... .....+.-..
T Consensus       160 ~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FH---pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t  235 (346)
T COG2706         160 VVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFH---PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDT  235 (346)
T ss_pred             EEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEc---CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeecc
Confidence            852       22222222110 011122 223456899999   89999888776 8999999998841 1111100011


Q ss_pred             eeeeeccCCceeEEEecCCCCCeEEEeeC-CceEEEEe
Q 025649          212 LIKNINLNKKVNWLCTTPTESENLVVCDT-SKVVKVYS  248 (250)
Q Consensus       212 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~vw~  248 (250)
                      +..-..-......+..++ ||++|.++.+ ...|-+|.
T Consensus       236 lP~dF~g~~~~aaIhis~-dGrFLYasNRg~dsI~~f~  272 (346)
T COG2706         236 LPEDFTGTNWAAAIHISP-DGRFLYASNRGHDSIAVFS  272 (346)
T ss_pred             CccccCCCCceeEEEECC-CCCEEEEecCCCCeEEEEE
Confidence            111111223455667776 9998887653 22455554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.01  E-value=9.3e-07  Score=64.81  Aligned_cols=175  Identities=12%  Similarity=0.013  Sum_probs=113.6

Q ss_pred             cEEEEcccceeeeeeccCCCCCe--eeEEEcCCCCeEEEEec-----CCCeEEEEEcc-CCCCccceecCCCCCCCCCCc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSIC--SSVQFIPWKPWEVISGG-----LDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v--~~l~~~~~~~~~l~s~s-----~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~   73 (250)
                      ..+||..+++....+. ...+.-  -.-.||+||+ +|++.-     ..|.|-|||.. +.+.+..+..+          
T Consensus        30 ~~v~D~~~g~~~~~~~-a~~gRHFyGHg~fs~dG~-~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~----------   97 (305)
T PF07433_consen   30 ALVFDCRTGQLLQRLW-APPGRHFYGHGVFSPDGR-LLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH----------   97 (305)
T ss_pred             EEEEEcCCCceeeEEc-CCCCCEEecCEEEcCCCC-EEEEeccccCCCcEEEEEEECcCCcEEEeEecCC----------
Confidence            4589999999887776 433322  1457999999 666653     35899999998 44555555533          


Q ss_pred             ccCCCceeEEecCCCcccCCCCCEEEEEeC------------------CCeEEEEeCCCceeEeeccC---CCCCCccce
Q 025649           74 CYNPAFVHAIAIPDADMLDKTNKICVVAKG------------------DGVVDVINIESELNISRSKS---TTKPLKGSQ  132 (250)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~~---~~~~~~~~~  132 (250)
                         --.-+.+.+.|      +++.|+++-.                  +..+.+.|..+|+.+.+...   .+...+..+
T Consensus        98 ---GIGPHel~l~p------DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL  168 (305)
T PF07433_consen   98 ---GIGPHELLLMP------DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL  168 (305)
T ss_pred             ---CcChhhEEEcC------CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence               12336677777      8877777632                  33567778888887766443   234679999


Q ss_pred             eecccceeEEEeeeeeeccCee---------eeeecc-------ccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEE
Q 025649          133 STSKVNIRDAEMEILDQSGGKR---------LHLDYS-------VGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVW  195 (250)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-------~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iw  195 (250)
                      ++.++|..++ ..-+.......         .+.+..       ...-.+.+-+|+++   +++.+++..| .-+.+.+|
T Consensus       169 a~~~~G~V~~-a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~---~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  169 AVDGDGTVAF-AMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAAD---RDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             EecCCCcEEE-EEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEe---CCCCEEEEECCCCCEEEEE
Confidence            9999998877 22222221110         000111       12234678899999   8887776555 57899999


Q ss_pred             ecCCCc
Q 025649          196 DCSRFQ  201 (250)
Q Consensus       196 d~~~~~  201 (250)
                      |..++.
T Consensus       245 d~~tg~  250 (305)
T PF07433_consen  245 DAATGR  250 (305)
T ss_pred             ECCCCC
Confidence            999983

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=1.8e-07  Score=73.74  Aligned_cols=174  Identities=7%  Similarity=-0.038  Sum_probs=93.4

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC----eEEEEEccCCC--CccceecCCCCCCCCCCccc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS----KLVMWDFSKGR--PNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg----~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~   75 (250)
                      |.+.++.+++.. .+. ...+.....+|+|||+.++++...+|    .+.+|++..+.  ....+..+            
T Consensus       213 I~~~~l~~g~~~-~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~------------  278 (428)
T PRK01029        213 IFLGSLENPAGK-KIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE------------  278 (428)
T ss_pred             EEEEECCCCCce-Eee-cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC------------
Confidence            455677666542 333 23444567899999984444443333    34557766531  11222211            


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEE--eCCC-ceeEeeccCCCCCCccceeecccceeEEEeeeeee--
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVI--NIES-ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ--  149 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~--d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  149 (250)
                      .........|+|      ||+.|+..+ .+|...+|  ++.. +.....+... ...+....|+|||+.++.....+.  
T Consensus       279 ~~~~~~~p~wSP------DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~~~~~p~wSPDG~~Laf~~~~~g~~  351 (428)
T PRK01029        279 AFGTQGNPSFSP------DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YRNSSCPAWSPDGKKIAFCSVIKGVR  351 (428)
T ss_pred             CCCCcCCeEECC------CCCEEEEEECCCCCceEEEEECcccccceEEeccC-CCCccceeECCCCCEEEEEEcCCCCc
Confidence            112335678998      999777665 46655555  4432 2222222221 245567899999998885432111  


Q ss_pred             --c--cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeC---CCeEEEEecCCC
Q 025649          150 --S--GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN---DKLVKVWDCSRF  200 (250)
Q Consensus       150 --~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~---d~~i~iwd~~~~  200 (250)
                        .  +....+ ...+......+....|+   |+|+.|+..+.   ...|.++|+..+
T Consensus       352 ~I~v~dl~~g~-~~~Lt~~~~~~~~p~wS---pDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        352 QICVYDLATGR-DYQLTTSPENKESPSWA---IDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             EEEEEECCCCC-eEEccCCCCCccceEEC---CCCCEEEEEECCCCCceEEEEECCCC
Confidence              1  111111 11222222345678899   89987765432   357888898876

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.98  E-value=1.1e-08  Score=71.67  Aligned_cols=76  Identities=13%  Similarity=0.071  Sum_probs=64.2

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      ..|++++-+|..++++++|+.||.+-+||.++......+-.            .|...++.+-|+|     .++..|+++
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~------------ahk~~i~eV~FHp-----k~p~~Lft~  242 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK------------AHKAEIWEVHFHP-----KNPEHLFTC  242 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH------------HhhhhhhheeccC-----CCchheeEe
Confidence            34999999998887899999999999999998754433332            2688899999998     688999999


Q ss_pred             eCCCeEEEEeCCC
Q 025649          102 KGDGVVDVINIES  114 (250)
Q Consensus       102 ~~d~~i~~~d~~~  114 (250)
                      ++||.+--||..+
T Consensus       243 sedGslw~wdas~  255 (319)
T KOG4714|consen  243 SEDGSLWHWDAST  255 (319)
T ss_pred             cCCCcEEEEcCCC
Confidence            9999999999885

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=4.4e-09  Score=79.60  Aligned_cols=164  Identities=12%  Similarity=0.017  Sum_probs=120.1

Q ss_pred             CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccc--eeEEEeeeeee
Q 025649           72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN--IRDAEMEILDQ  149 (250)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  149 (250)
                      .+..|++-|..+.|+.      .|..|++|+.|..|.+||...+.....+...+...+....|-|..  +.++ ....++
T Consensus       137 kL~~H~GcVntV~FN~------~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~-~~s~dg  209 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQ------RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIV-TSSRDG  209 (559)
T ss_pred             cccCCCCccceeeecc------cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCce-eccccC
Confidence            3444788899999997      999999999999999999999988888888877778777787743  2333 222222


Q ss_pred             ccC-------eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC--
Q 025649          150 SGG-------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK--  220 (250)
Q Consensus       150 ~~~-------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--  220 (250)
                      ...       ...+....+..|.++|..++.-|.+|  .-|.+++.|+.+.-+|++.....      ..+.....+..  
T Consensus       210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa------~~~~cr~~~~~~~  281 (559)
T KOG1334|consen  210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPA------EKFVCREADEKER  281 (559)
T ss_pred             ceeeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCcc------ceeeeeccCCccc
Confidence            211       11222345567999999999996544  56889999999999999986432      22223334444  


Q ss_pred             -ceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          221 -KVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       221 -~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                       ..++++..|.+...+++|+.|..+++||.+
T Consensus       282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R  312 (559)
T KOG1334|consen  282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQR  312 (559)
T ss_pred             eeeeeEecCCCCccccccCChhhhhhhhccc
Confidence             467888898777789999999999999864

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.98  E-value=6.4e-09  Score=90.07  Aligned_cols=153  Identities=14%  Similarity=0.087  Sum_probs=117.2

Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC---e
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG---K  153 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  153 (250)
                      -..+.++.-+|      ..-+.++|++||.+++|....++.+..........+..+.|+.+|+.+. +...|+...   .
T Consensus      2208 v~~v~r~~sHp------~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~-i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2208 VENVRRMTSHP------SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFG-IVDGDGDLSLWQA 2280 (2439)
T ss_pred             cCceeeecCCC------CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCcee-eeccCCceeeccc
Confidence            34567777777      7778899999999999999999888877776668899999999998877 333333221   1


Q ss_pred             eeeeeccccCccccEEEEEeecCCCCCcEEEEee---CCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCC
Q 025649          154 RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT  230 (250)
Q Consensus       154 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  230 (250)
                      ..++....+.|........|-   .  ..+++++   .++.+.+||.......      .++.  ..|.+.++.+++.| 
T Consensus      2281 ~pk~~~s~qchnk~~~Df~Fi---~--s~~~tag~s~d~~n~~lwDtl~~~~~------s~v~--~~H~~gaT~l~~~P- 2346 (2439)
T KOG1064|consen 2281 SPKPYTSWQCHNKALSDFRFI---G--SLLATAGRSSDNRNVCLWDTLLPPMN------SLVH--TCHDGGATVLAYAP- 2346 (2439)
T ss_pred             CCcceeccccCCccccceeee---e--hhhhccccCCCCCcccchhcccCccc------ceee--eecCCCceEEEEcC-
Confidence            244556677888888888887   3  5677654   4789999997654211      2333  78999999999998 


Q ss_pred             CCCeEEEeeCCceEEEEeCC
Q 025649          231 ESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       231 ~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ..+.|++||.+|.|++||++
T Consensus      2347 ~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred             cceEEEecCCcCcEEEeehH
Confidence            77899999999999999974

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=3.7e-09  Score=76.82  Aligned_cols=157  Identities=10%  Similarity=0.119  Sum_probs=105.8

Q ss_pred             EEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeE
Q 025649           28 QFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV  107 (250)
Q Consensus        28 ~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i  107 (250)
                      +|+-+-..+-++.+.+..|-+-|+++|-.. .|.              ....|.++.|..      .++++..|+.+|.|
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~--------------sksDVfAlQf~~------s~nLv~~GcRngeI  276 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQ--------------SKSDVFALQFAG------SDNLVFNGCRNGEI  276 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeeccccc-ccc--------------cchhHHHHHhcc------cCCeeEecccCCcE
Confidence            555332223356666777888888776432 222              245678888876      78999999999999


Q ss_pred             EEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEee
Q 025649          108 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG  187 (250)
Q Consensus       108 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~  187 (250)
                      ..+|++....                                   ....+...+ -|...|+++..-.  -++++|++.+
T Consensus       277 ~~iDLR~rnq-----------------------------------G~~~~a~rl-yh~Ssvtslq~Lq--~s~q~LmaS~  318 (425)
T KOG2695|consen  277 FVIDLRCRNQ-----------------------------------GNGWCAQRL-YHDSSVTSLQILQ--FSQQKLMASD  318 (425)
T ss_pred             EEEEeeeccc-----------------------------------CCCcceEEE-EcCcchhhhhhhc--cccceEeecc
Confidence            9999996410                                   001111122 3778888887762  2678999999


Q ss_pred             CCCeEEEEecCCCcceecccccceeeeeeccCCceeEE--EecCCCCCeEEEeeCCceEEEEeCC
Q 025649          188 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL--CTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       188 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .+|+|++||++-.++.      .-+..+.+|.+.-.-+  -..+ ....+++++.|...++|.+.
T Consensus       319 M~gkikLyD~R~~K~~------~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  319 MTGKIKLYDLRATKCK------KSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             CcCceeEeeehhhhcc------cceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecc
Confidence            9999999999986432      2356777886543322  2334 44578889999999999863

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.96  E-value=2.6e-07  Score=65.26  Aligned_cols=185  Identities=9%  Similarity=-0.091  Sum_probs=110.1

Q ss_pred             EEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeE
Q 025649            3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA   82 (250)
Q Consensus         3 ~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   82 (250)
                      .+|...+++....+-..|...|+-+.=..+.+.-+..++.|.++++.++.-+.........             .-.+.+
T Consensus        97 d~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~-------------~~~~ns  163 (344)
T KOG4532|consen   97 DLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ-------------NLTQNS  163 (344)
T ss_pred             eeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc-------------ccceee
Confidence            3555554443322221444444433323333335777888889998888654333222211             123778


Q ss_pred             EecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeecccc
Q 025649           83 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG  162 (250)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (250)
                      +.+++      +++++++.+....|-+|.+......                      +.              .+ ...
T Consensus       164 ~~~sn------d~~~~~~Vgds~~Vf~y~id~~sey----------------------~~--------------~~-~~a  200 (344)
T KOG4532|consen  164 LHYSN------DPSWGSSVGDSRRVFRYAIDDESEY----------------------IE--------------NI-YEA  200 (344)
T ss_pred             eEEcC------CCceEEEecCCCcceEEEeCCccce----------------------ee--------------ee-Eec
Confidence            88888      9999999998899999888752211                      00              00 111


Q ss_pred             CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC-CeEEEeeCC
Q 025649          163 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES-ENLVVCDTS  241 (250)
Q Consensus       163 ~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d  241 (250)
                      .-...-.+..|+   .+...+|+++.||++.|||++....+..    +.-.....|.+.+..+.|++... .+|+-.-.-
T Consensus       201 ~t~D~gF~~S~s---~~~~~FAv~~Qdg~~~I~DVR~~~tpm~----~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhf  273 (344)
T KOG4532|consen  201 PTSDHGFYNSFS---ENDLQFAVVFQDGTCAIYDVRNMATPMA----EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHF  273 (344)
T ss_pred             ccCCCceeeeec---cCcceEEEEecCCcEEEEEecccccchh----hhcccCCCCCCceEEEEecCCCcceEEEEecCc
Confidence            122333677888   8888999999999999999998644321    11122335788899999986222 134444445


Q ss_pred             ceEEEEeCC
Q 025649          242 KVVKVYSIS  250 (250)
Q Consensus       242 ~~i~vw~~~  250 (250)
                      +.+.+-|++
T Consensus       274 s~~hv~D~R  282 (344)
T KOG4532|consen  274 SRVHVVDTR  282 (344)
T ss_pred             ceEEEEEcc
Confidence            556666653

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=7e-08  Score=74.45  Aligned_cols=129  Identities=15%  Similarity=0.244  Sum_probs=91.6

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEE--ecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVIS--GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s--~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +.+.+++.......|.  -.++|.++.|+|+++ -++.  |-.--.+.|+|++ +.++..+.               ..+
T Consensus       253 Lyll~t~g~s~~V~L~--k~GPVhdv~W~~s~~-EF~VvyGfMPAkvtifnlr-~~~v~df~---------------egp  313 (566)
T KOG2315|consen  253 LYLLATQGESVSVPLL--KEGPVHDVTWSPSGR-EFAVVYGFMPAKVTIFNLR-GKPVFDFP---------------EGP  313 (566)
T ss_pred             EEEEEecCceEEEecC--CCCCceEEEECCCCC-EEEEEEecccceEEEEcCC-CCEeEeCC---------------CCC
Confidence            4566665334444444  689999999999997 4544  4556789999985 66655554               346


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCC---CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeee
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH  156 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (250)
                      -+++-|+|      .|++|+.++-+   |.+-+||+.+.+.+                                      
T Consensus       314 RN~~~fnp------~g~ii~lAGFGNL~G~mEvwDv~n~K~i--------------------------------------  349 (566)
T KOG2315|consen  314 RNTAFFNP------HGNIILLAGFGNLPGDMEVWDVPNRKLI--------------------------------------  349 (566)
T ss_pred             ccceEECC------CCCEEEEeecCCCCCceEEEeccchhhc--------------------------------------
Confidence            67889998      99999888754   78999999874432                                      


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEee------CCCeEEEEecCCC
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGG------NDKLVKVWDCSRF  200 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~------~d~~i~iwd~~~~  200 (250)
                        ..+..-  .-+-+.|+   |+|++|+|+.      .|+.++||+....
T Consensus       350 --~~~~a~--~tt~~eW~---PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  350 --AKFKAA--NTTVFEWS---PDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             --cccccC--CceEEEEc---CCCcEEEEEeccccEEecCCeEEEEecCc
Confidence              233322  23456888   8999998875      4788999998763

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.90  E-value=2e-06  Score=65.21  Aligned_cols=195  Identities=11%  Similarity=0.017  Sum_probs=115.6

Q ss_pred             CcEEEEcccceeeeeeccCC------CCCeeeEEEcCCCCeEEEEecC-CCeEEEEEccCCCCccceecCCCC------C
Q 025649            1 MWQIIDIRQHCLYKSLRAGH------SSICSSVQFIPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPE------N   67 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h------~~~v~~l~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~~------~   67 (250)
                      .|.+||+.+++.+..+..+-      ...-..++++|+|++++++--. +..|.+.|+.+++.+..+..+...      .
T Consensus        78 ~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e  157 (352)
T TIGR02658        78 YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN  157 (352)
T ss_pred             EEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC
Confidence            37899999999998887211      1123488999999944444434 899999999998887776643210      0


Q ss_pred             CCCCCcccCCC------------ceeEEec----------CCCcccCCCCCEEEEEeCCCeEEEEeCCCce-----eEee
Q 025649           68 NGNAGQCYNPA------------FVHAIAI----------PDADMLDKTNKICVVAKGDGVVDVINIESEL-----NISR  120 (250)
Q Consensus        68 ~~~~~~~~~~~------------~v~~~~~----------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~  120 (250)
                      ......|....            ......+          .| .+...+++++.+... |.|.+.|+....     ....
T Consensus       158 ~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~  235 (352)
T TIGR02658       158 DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEA  235 (352)
T ss_pred             CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC-ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeee
Confidence            00000011000            0111111          11 112237777777766 999999965422     1111


Q ss_pred             ccCC------CCCCccceeecccceeEEEee-------------eeeeccCeeeeeeccccCccccEEEEEeecCCCCCc
Q 025649          121 SKST------TKPLKGSQSTSKVNIRDAEME-------------ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK  181 (250)
Q Consensus       121 ~~~~------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  181 (250)
                      +...      ......-++++|+++.+....             .....+....+.+..+.. ...+..++++   |+++
T Consensus       236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS---~Dgk  311 (352)
T TIGR02658       236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVS---QDAK  311 (352)
T ss_pred             ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEEC---CCCC
Confidence            1111      112333499999998887422             122223344444555543 3468899999   8998


Q ss_pred             -EEEEee-CCCeEEEEecCCCc
Q 025649          182 -YLISGG-NDKLVKVWDCSRFQ  201 (250)
Q Consensus       182 -~l~s~~-~d~~i~iwd~~~~~  201 (250)
                       +|++.+ .++.|.++|..+++
T Consensus       312 p~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       312 PLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             eEEEEeCCCCCcEEEEECcCCe
Confidence             777666 57889999999983

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=1.9e-07  Score=72.28  Aligned_cols=208  Identities=11%  Similarity=-0.015  Sum_probs=115.6

Q ss_pred             cEEEEcccceeeeeeccCCCC---CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSS---ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~---~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +.|||+.+|.+.+.|. .-.+   .---..||.|++ ++|--.. ..|.||+..+..++..-..             ...
T Consensus       284 l~IWDI~tG~lkrsF~-~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf~lld~Ksl-------------ki~  347 (698)
T KOG2314|consen  284 LIIWDIATGLLKRSFP-VIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSFMLLDKKSL-------------KIS  347 (698)
T ss_pred             EEEEEccccchhccee-ccCCCccccceEEeccCCc-eeEEecc-ceEEEEecCceeeeccccc-------------CCc
Confidence            6899999999998887 4222   223567999998 7776555 5789998765332211111             122


Q ss_pred             ceeEEecCCC-----------------------------------------cccCCCCCEEEEEe----------CCCeE
Q 025649           79 FVHAIAIPDA-----------------------------------------DMLDKTNKICVVAK----------GDGVV  107 (250)
Q Consensus        79 ~v~~~~~~~~-----------------------------------------~~~~~~~~~l~~~~----------~d~~i  107 (250)
                      .|....|+|.                                         .++..+|.+|+.--          .-..+
T Consensus       348 gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~  427 (698)
T KOG2314|consen  348 GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNL  427 (698)
T ss_pred             cccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeE
Confidence            3444444441                                         01112334443220          01123


Q ss_pred             EEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC----------eeeeeeccccCccccEEEEEeecCC
Q 025649          108 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG----------KRLHLDYSVGGHTAAASCVAFSMFG  177 (250)
Q Consensus       108 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~h~~~v~~~~~~p~~  177 (250)
                      .|+.++........ ...+..+...+|.|.|..++.+........          .....+..+..  ...+.+.|+   
T Consensus       428 eIfrireKdIpve~-velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfws---  501 (698)
T KOG2314|consen  428 EIFRIREKDIPVEV-VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWS---  501 (698)
T ss_pred             EEEEeeccCCCcee-eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEc---
Confidence            33333332221111 112356677889999998886443333221          12223334432  456789999   


Q ss_pred             CCCcEEEEe---eCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC
Q 025649          178 ERGKYLISG---GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS  241 (250)
Q Consensus       178 ~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  241 (250)
                      |.|++++.+   |..|.+.++|+....         +......-....+.+.|.| .|+|+++++.-
T Consensus       502 PkG~fvvva~l~s~~g~l~F~D~~~a~---------~k~~~~~eh~~at~veWDP-tGRYvvT~ss~  558 (698)
T KOG2314|consen  502 PKGRFVVVAALVSRRGDLEFYDTDYAD---------LKDTASPEHFAATEVEWDP-TGRYVVTSSSS  558 (698)
T ss_pred             CCCcEEEEEEecccccceEEEecchhh---------hhhccCccccccccceECC-CCCEEEEeeeh
Confidence            899988775   457899999988631         1111111122356678998 89999998753

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.88  E-value=3e-06  Score=61.59  Aligned_cols=207  Identities=13%  Similarity=0.026  Sum_probs=113.6

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEE--EcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQ--FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~--~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|..||..+|+.+.... - ........  ..+++. .+++++.++.|..||..+|+.+..+...              .
T Consensus         4 ~l~~~d~~tG~~~W~~~-~-~~~~~~~~~~~~~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~~--------------~   66 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYD-L-GPGIGGPVATAVPDGG-RVYVASGDGNLYALDAKTGKVLWRFDLP--------------G   66 (238)
T ss_dssp             EEEEEETTTTEEEEEEE-C-SSSCSSEEETEEEETT-EEEEEETTSEEEEEETTTSEEEEEEECS--------------S
T ss_pred             EEEEEECCCCCEEEEEE-C-CCCCCCccceEEEeCC-EEEEEcCCCEEEEEECCCCCEEEEeecc--------------c
Confidence            47889999999998887 2 21122222  333455 6777789999999999999988888743              1


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec-cCCC-C-CCccceeecccceeEEEee---eeeeccC
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS-KSTT-K-PLKGSQSTSKVNIRDAEME---ILDQSGG  152 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~~~~~---~~~~~~~  152 (250)
                      .+......       .+..+++++.++.++.+|..+|+..... .... . ...........+..++...   ..-..+.
T Consensus        67 ~~~~~~~~-------~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~  139 (238)
T PF13360_consen   67 PISGAPVV-------DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP  139 (238)
T ss_dssp             CGGSGEEE-------ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred             cccceeee-------cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec
Confidence            11111111       4666777778889999999999988773 3221 1 1122223333344333111   1111122


Q ss_pred             eeeeeeccccCccc----------cE-EEEEeecCCCCCcEEEEeeCCCe-EEEEecCCCcceecccccceeeeeeccCC
Q 025649          153 KRLHLDYSVGGHTA----------AA-SCVAFSMFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSINNDLLIKNINLNK  220 (250)
Q Consensus       153 ~~~~~~~~~~~h~~----------~v-~~~~~~p~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  220 (250)
                      ...+.+........          .+ ..+.+    .++ .+..++.++. +.+ |+.++         +.+ .... ..
T Consensus       140 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~v~~~~~~g~~~~~-d~~tg---------~~~-w~~~-~~  202 (238)
T PF13360_consen  140 KTGKLLWKYPVGEPRGSSPISSFSDINGSPVI----SDG-RVYVSSGDGRVVAV-DLATG---------EKL-WSKP-IS  202 (238)
T ss_dssp             TTTEEEEEEESSTT-SS--EEEETTEEEEEEC----CTT-EEEEECCTSSEEEE-ETTTT---------EEE-EEEC-SS
T ss_pred             CCCcEEEEeecCCCCCCcceeeecccccceEE----ECC-EEEEEcCCCeEEEE-ECCCC---------CEE-EEec-CC
Confidence            22222222222111          11 22222    345 5666666664 555 99998         322 1112 22


Q ss_pred             ceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          221 KVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       221 ~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .+..+ ... ++..++.++.++.+..||++
T Consensus       203 ~~~~~-~~~-~~~~l~~~~~~~~l~~~d~~  230 (238)
T PF13360_consen  203 GIYSL-PSV-DGGTLYVTSSDGRLYALDLK  230 (238)
T ss_dssp             -ECEC-EEC-CCTEEEEEETTTEEEEEETT
T ss_pred             CccCC-cee-eCCEEEEEeCCCEEEEEECC
Confidence            33332 222 55677777799999999974

...

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=3.5e-06  Score=66.14  Aligned_cols=176  Identities=5%  Similarity=-0.032  Sum_probs=100.3

Q ss_pred             CeeeEEEcCCCCeEEEEecC---CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649           23 ICSSVQFIPWKPWEVISGGL---DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV   99 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~   99 (250)
                      ....-.|+|+|+..++..+.   +..|.++|+.+++.......              +.......|+|      ||+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~--------------~g~~~~~~~SP------DG~~la  248 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS--------------QGMLVVSDVSK------DGSKLL  248 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC--------------CCcEEeeEECC------CCCEEE
Confidence            67789999999842443332   45799999988765444331              24455678998      887665


Q ss_pred             EE-eC--CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----c--Ceeeeeec-cccCccccEE
Q 025649          100 VA-KG--DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----G--GKRLHLDY-SVGGHTAAAS  169 (250)
Q Consensus       100 ~~-~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~-~~~~h~~~v~  169 (250)
                      .. +.  +..|.++|+.++.........  .......|+|||+.++........    .  ....+..+ ...+.    .
T Consensus       249 ~~~~~~g~~~Iy~~dl~~g~~~~LT~~~--~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~  322 (419)
T PRK04043        249 LTMAPKGQPDIYLYDTNTKTLTQITNYP--GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----N  322 (419)
T ss_pred             EEEccCCCcEEEEEECCCCcEEEcccCC--CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----c
Confidence            44 33  457888898877643322221  234456899999888743221110    0  00111100 11111    1


Q ss_pred             EEEeecCCCCCcEEEEeeCC---------CeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649          170 CVAFSMFGERGKYLISGGND---------KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD  239 (250)
Q Consensus       170 ~~~~~p~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  239 (250)
                      ...|+   |+|++++..+..         ..|.+.|+.++...          .+... .......|+| ||+.|+...
T Consensus       323 ~~~~S---PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~----------~LT~~-~~~~~p~~SP-DG~~I~f~~  386 (419)
T PRK04043        323 NSSVS---TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR----------RLTAN-GVNQFPRFSS-DGGSIMFIK  386 (419)
T ss_pred             CceEC---CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE----------ECCCC-CCcCCeEECC-CCCEEEEEE
Confidence            23788   899988766543         36888888876321          11111 1222467887 888765544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.86  E-value=1.9e-08  Score=77.93  Aligned_cols=177  Identities=12%  Similarity=0.075  Sum_probs=115.8

Q ss_pred             CcEEEEcc-------cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649            1 MWQIIDIR-------QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         1 ti~iwd~~-------~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~   73 (250)
                      ||++|.++       |..+..+++ .|+.+|.++.|..+.+ +++++  ||-|.+||.--++.+..+.-.. .  .    
T Consensus       758 TVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr-~i~Sc--D~giHlWDPFigr~Laq~~dap-k--~----  826 (1034)
T KOG4190|consen  758 TVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLR-SIASC--DGGIHLWDPFIGRLLAQMEDAP-K--E----  826 (1034)
T ss_pred             eEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccc-eeeec--cCcceeecccccchhHhhhcCc-c--c----
Confidence            78999986       234667788 9999999999999987 66654  7899999998888776443110 0  0    


Q ss_pred             ccCCCceeEEecCCCcccCCCCCEEEEE-eCCCeEEEEeCCCceeEeeccCC----CCCCccceeecccceeEEE---ee
Q 025649           74 CYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKST----TKPLKGSQSTSKVNIRDAE---ME  145 (250)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~  145 (250)
                       .....|.++.--       +..++..| +...+|+++|.+........+..    ....+.+++..+.|+.++.   .|
T Consensus       827 -~a~~~ikcl~nv-------~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG  898 (1034)
T KOG4190|consen  827 -GAGGNIKCLENV-------DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG  898 (1034)
T ss_pred             -CCCceeEecccC-------cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCC
Confidence             011234443221       34444444 78899999999987655443322    2356788999999998873   33


Q ss_pred             eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEE-EecCCC
Q 025649          146 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV-WDCSRF  200 (250)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~i-wd~~~~  200 (250)
                      .....+.+..+.+..++........++-    |..+.++....|.++.+ |..-.+
T Consensus       899 ci~~LDaR~G~vINswrpmecdllqlaa----psdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  899 CIAILDARNGKVINSWRPMECDLLQLAA----PSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             cEEEEecCCCceeccCCcccchhhhhcC----chhHHHHhhcccceeEeeehhcCC
Confidence            3333344444444455444444444442    56678888888999988 876665

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.85  E-value=1.8e-08  Score=80.40  Aligned_cols=202  Identities=12%  Similarity=0.081  Sum_probs=131.7

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      -.+++..+..+|.|+ -++.++.-|- .+-|+.. +.+.+-+.--            .+-.+-...|+|    ++...+-
T Consensus        23 v~~~~~a~si~p~gr-di~lAsr~gl-~i~dld~p~~ppr~l~h~------------tpw~vad~qws~----h~a~~~w   84 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGR-DIVLASRQGL-YIIDLDDPFTPPRWLHHI------------TPWQVADVQWSP----HPAKPYW   84 (1081)
T ss_pred             ecCcccceeeccccc-hhhhhhhcCe-EEEeccCCCCCceeeecc------------Ccchhcceeccc----CCCCcee
Confidence            456788999999998 6888887664 4456654 3333333211            234556677777    2233444


Q ss_pred             EEEeCCCeEEEEeCCC--ceeEeeccCCCCCCccceeecccceeEEEeeeeeec----cCe-eeeeeccccCccccEEEE
Q 025649           99 VVAKGDGVVDVINIES--ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGK-RLHLDYSVGGHTAAASCV  171 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~h~~~v~~~  171 (250)
                      ++......-.+|++..  .+.+......+...+..+.|+|+..-+......+..    +.. .-.++..+..-......|
T Consensus        85 iVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqV  164 (1081)
T KOG0309|consen   85 IVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQV  164 (1081)
T ss_pred             EEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCcee
Confidence            4444555567888764  333344444556788999999988777654433322    211 122334444444566889


Q ss_pred             EeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          172 AFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       172 ~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +|+   .....+.+.+..+.|++||++.+.        .++...++|...|+.+.|.......+.+++.||+|+.||.+
T Consensus       165 kwn---yk~p~vlasshg~~i~vwd~r~gs--------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  165 KWN---YKDPNVLASSHGNDIFVWDLRKGS--------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             eec---ccCcchhhhccCCceEEEeccCCC--------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            998   444455556667899999999985        56678888999999998876555568899999999999963

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.82  E-value=3.1e-08  Score=71.29  Aligned_cols=203  Identities=11%  Similarity=0.073  Sum_probs=120.1

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC-Ccc----ceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-PNK----IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT   94 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (250)
                      ..+.|+++.|...|. +|++|...|.|.+|.-.... +..    .++.+.+ .-.....+--...|..+.|..    +..
T Consensus        25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~-EFDYLkSleieEKin~I~w~~----~t~   98 (460)
T COG5170          25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL-EFDYLKSLEIEEKINAIEWFD----DTG   98 (460)
T ss_pred             ccceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhccccc-chhhhhhccHHHHhhheeeec----CCC
Confidence            346799999999999 99999999999999865432 111    1221100 000111111223566666654    223


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeEeeccCC--------CCCCccce------eecccceeEEEeeeeeeccCeeeeeecc
Q 025649           95 NKICVVAKGDGVVDVINIESELNISRSKST--------TKPLKGSQ------STSKVNIRDAEMEILDQSGGKRLHLDYS  160 (250)
Q Consensus        95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--------~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (250)
                      ...++..+.|.+|++|-+.........+..        .++++.+.      ..+....+++            ..+.+.
T Consensus        99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iia------------a~p~rv  166 (460)
T COG5170          99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIA------------AKPCRV  166 (460)
T ss_pred             cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEE------------ecccee
Confidence            456777789999999999864332211111        11111110      0111111111            111112


Q ss_pred             c-cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-----CCceeEEEecCCCCCe
Q 025649          161 V-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-----NKKVNWLCTTPTESEN  234 (250)
Q Consensus       161 ~-~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~  234 (250)
                      . ..|...|.++.|+   .+.+.++++. |=+|.+|++.-.....      -+...+.|     ...|++..|+|.....
T Consensus       167 yaNaH~yhiNSiS~N---sD~et~lSaD-dLrINLWnl~i~D~sF------nIVDiKP~nmeeLteVItSaeFhp~~cn~  236 (460)
T COG5170         167 YANAHPYHINSISFN---SDKETLLSAD-DLRINLWNLEIIDGSF------NIVDIKPHNMEELTEVITSAEFHPEMCNV  236 (460)
T ss_pred             ccccceeEeeeeeec---Cchheeeecc-ceeeeeccccccCCce------EEEeccCccHHHHHHHHhhcccCHhHcce
Confidence            2 5688889999998   7877777764 7899999987654321      12223333     3458888999977777


Q ss_pred             EEEeeCCceEEEEeCC
Q 025649          235 LVVCDTSKVVKVYSIS  250 (250)
Q Consensus       235 l~s~~~d~~i~vw~~~  250 (250)
                      +.-.+..|.|++-|++
T Consensus       237 fmYSsSkG~Ikl~DlR  252 (460)
T COG5170         237 FMYSSSKGEIKLNDLR  252 (460)
T ss_pred             EEEecCCCcEEehhhh
Confidence            8888889999998874

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.80  E-value=1.1e-06  Score=68.88  Aligned_cols=71  Identities=15%  Similarity=0.186  Sum_probs=59.2

Q ss_pred             ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCce
Q 025649          164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV  243 (250)
Q Consensus       164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  243 (250)
                      ....|.|++++   |+...++.|+.||.|.+||...+..           ......-.++.++|+| +|.++++|+..|.
T Consensus       258 L~s~v~~ca~s---p~E~kLvlGC~DgSiiLyD~~~~~t-----------~~~ka~~~P~~iaWHp-~gai~~V~s~qGe  322 (545)
T PF11768_consen  258 LPSQVICCARS---PSEDKLVLGCEDGSIILYDTTRGVT-----------LLAKAEFIPTLIAWHP-DGAIFVVGSEQGE  322 (545)
T ss_pred             cCCcceEEecC---cccceEEEEecCCeEEEEEcCCCee-----------eeeeecccceEEEEcC-CCcEEEEEcCCce
Confidence            55678999999   8999999999999999999988521           1223344578899998 8999999999999


Q ss_pred             EEEEeC
Q 025649          244 VKVYSI  249 (250)
Q Consensus       244 i~vw~~  249 (250)
                      +.+||+
T Consensus       323 lQ~FD~  328 (545)
T PF11768_consen  323 LQCFDM  328 (545)
T ss_pred             EEEEEe
Confidence            999997

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=1.7e-06  Score=67.28  Aligned_cols=211  Identities=13%  Similarity=0.136  Sum_probs=122.5

Q ss_pred             EEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC-----------CCeEEEEEccCCCCccceecCCCCCCCCC
Q 025649            3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL-----------DSKLVMWDFSKGRPNKIVNFGLPENNGNA   71 (250)
Q Consensus         3 ~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~   71 (250)
                      .+|-=++...+++|.  |. .|.-+.|||..+ +|+|=+.           ...++|||+.+|...+.+....       
T Consensus       234 ~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~-------  302 (698)
T KOG2314|consen  234 ALWGGESFDRIQRFY--HP-GVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIK-------  302 (698)
T ss_pred             eeecCccHHHHHhcc--CC-CceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEccccchhcceeccC-------
Confidence            344433334445554  55 488999999999 8998653           2579999999999988887420       


Q ss_pred             CcccCCCcee-EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec
Q 025649           72 GQCYNPAFVH-AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS  150 (250)
Q Consensus        72 ~~~~~~~~v~-~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (250)
                          .+..++ -..||-      |++++|--.. ..|.||+..+.. +...+.-.-..|....|+|.+..|+...-....
T Consensus       303 ----~~~~~WP~frWS~------DdKy~Arm~~-~sisIyEtpsf~-lld~Kslki~gIr~FswsP~~~llAYwtpe~~~  370 (698)
T KOG2314|consen  303 ----SPYLKWPIFRWSH------DDKYFARMTG-NSISIYETPSFM-LLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN  370 (698)
T ss_pred             ----CCccccceEEecc------CCceeEEecc-ceEEEEecCcee-eecccccCCccccCcccCCCcceEEEEcccccC
Confidence                011121 245665      8888887766 669999988733 323333333688899999999998842111111


Q ss_pred             --------cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEe----------eCCCeEEEEecCCCcceeccccccee
Q 025649          151 --------GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG----------GNDKLVKVWDCSRFQGVQTSINNDLL  212 (250)
Q Consensus       151 --------~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~----------~~d~~i~iwd~~~~~~~~~~~~~~~~  212 (250)
                              .....+.+++-.-|.-.=..+-|-   .+|.+|+.-          +.-..+-|+.++..         ...
T Consensus       371 ~parvtL~evPs~~~iRt~nlfnVsDckLhWQ---k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK---------dIp  438 (698)
T KOG2314|consen  371 IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ---KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK---------DIP  438 (698)
T ss_pred             CcceEEEEecCccceeeeccceeeeccEEEec---cCCcEEEEEEEeeccccccceEeeEEEEEeecc---------CCC
Confidence                    112222222222222111233444   677777642          11224556666654         333


Q ss_pred             eeeeccCCceeEEEecCCCCCeEEEee-C--CceEEEEeC
Q 025649          213 IKNINLNKKVNWLCTTPTESENLVVCD-T--SKVVKVYSI  249 (250)
Q Consensus       213 ~~~~~~~~~v~~~~~~~~~~~~l~s~~-~--d~~i~vw~~  249 (250)
                      .........|...+|-| .|..+++-+ .  ..++.+|.+
T Consensus       439 ve~velke~vi~FaWEP-~gdkF~vi~g~~~k~tvsfY~~  477 (698)
T KOG2314|consen  439 VEVVELKESVIAFAWEP-HGDKFAVISGNTVKNTVSFYAV  477 (698)
T ss_pred             ceeeecchheeeeeecc-CCCeEEEEEccccccceeEEEe
Confidence            33445667888899998 565555432 2  245666643

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.70  E-value=9.9e-07  Score=72.31  Aligned_cols=172  Identities=9%  Similarity=0.064  Sum_probs=114.3

Q ss_pred             EEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeE
Q 025649            3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA   82 (250)
Q Consensus         3 ~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   82 (250)
                      ..+|+.+.+..+... -..+.|+=++.  +++ ++.+|...|+|.+-|.++.+.++++..+             .+.+..
T Consensus       160 i~~Dl~~~~e~r~~~-v~a~~v~imR~--Nnr-~lf~G~t~G~V~LrD~~s~~~iht~~aH-------------s~siSD  222 (1118)
T KOG1275|consen  160 IHIDLNTEKETRTTN-VSASGVTIMRY--NNR-NLFCGDTRGTVFLRDPNSFETIHTFDAH-------------SGSISD  222 (1118)
T ss_pred             eeeecccceeeeeee-ccCCceEEEEe--cCc-EEEeecccceEEeecCCcCceeeeeecc-------------ccceee
Confidence            346676766665555 33334555543  445 8999999999999999999999999844             667776


Q ss_pred             EecCCCcccCCCCCEEEEEeC---------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCe
Q 025649           83 IAIPDADMLDKTNKICVVAKG---------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK  153 (250)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (250)
                      +..        .|+.|++++.         |..|+|||++.-+.+.                                  
T Consensus       223 fDv--------~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~----------------------------------  260 (1118)
T KOG1275|consen  223 FDV--------QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS----------------------------------  260 (1118)
T ss_pred             eec--------cCCeEEEeecccccccccccchhhhhhhhhhhccC----------------------------------
Confidence            655        4788888865         5567888888643221                                  


Q ss_pred             eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC
Q 025649          154 RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE  233 (250)
Q Consensus       154 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  233 (250)
                            .+.-+.++ .-+.|.|  .-...++.++..|...+-|..+.....     .-......-...+..+.+++ +++
T Consensus       261 ------PI~~~~~P-~flrf~P--sl~t~~~V~S~sGq~q~vd~~~lsNP~-----~~~~~v~p~~s~i~~fDiSs-n~~  325 (1118)
T KOG1275|consen  261 ------PIQFPYGP-QFLRFHP--SLTTRLAVTSQSGQFQFVDTATLSNPP-----AGVKMVNPNGSGISAFDISS-NGD  325 (1118)
T ss_pred             ------CcccccCc-hhhhhcc--cccceEEEEecccceeeccccccCCCc-----cceeEEccCCCcceeEEecC-CCc
Confidence                  12222222 3456675  223567778888999999855443210     11112222334488899997 899


Q ss_pred             eEEEeeCCceEEEEe
Q 025649          234 NLVVCDTSKVVKVYS  248 (250)
Q Consensus       234 ~l~s~~~d~~i~vw~  248 (250)
                      .|+.|..+|.|.+|-
T Consensus       326 alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  326 ALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eEEEecccCcEeeec
Confidence            999999999999994

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.69  E-value=1.3e-05  Score=63.12  Aligned_cols=168  Identities=7%  Similarity=-0.110  Sum_probs=95.1

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC--CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      |.++|+.+++......  ..+......|+|||+.++++.+.+  ..|.++|+.+++.. .+...             +..
T Consensus       215 Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~-------------~~~  278 (419)
T PRK04043        215 LYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNY-------------PGI  278 (419)
T ss_pred             EEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccC-------------CCc
Confidence            6788888876643333  455566788999998555565544  46777788766533 33211             122


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeC-CC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee--------
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKG-DG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD--------  148 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  148 (250)
                      .....|+|      ||+.|+..+. .+  .|.+.|+.++.........  .  ....|+|+|+.++......        
T Consensus       279 d~~p~~SP------DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g--~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~  348 (419)
T PRK04043        279 DVNGNFVE------DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG--K--NNSSVSTYKNYIVYSSRETNNEFGKNT  348 (419)
T ss_pred             cCccEECC------CCCEEEEEECCCCCceEEEEECCCCCeEeCccCC--C--cCceECCCCCEEEEEEcCCCcccCCCC
Confidence            23457888      8987766653 23  6788888877654332221  1  1248999999998543321        


Q ss_pred             --ecc--CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC-C--eEEEEecCCC
Q 025649          149 --QSG--GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-K--LVKVWDCSRF  200 (250)
Q Consensus       149 --~~~--~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d-~--~i~iwd~~~~  200 (250)
                        ...  ..... ...+... .......|+   |+|+.++..+.+ +  .+.+.++...
T Consensus       349 ~~I~v~d~~~g~-~~~LT~~-~~~~~p~~S---PDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        349 FNLYLISTNSDY-IRRLTAN-GVNQFPRFS---SDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             cEEEEEECCCCC-eEECCCC-CCcCCeEEC---CCCCEEEEEEccCCcEEEEEEecCCC
Confidence              110  00000 1122211 122346788   899877665532 2  3566666553

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.67  E-value=1.9e-05  Score=61.66  Aligned_cols=210  Identities=11%  Similarity=0.044  Sum_probs=109.5

Q ss_pred             cEEEEcccceeeeeeccCCCCCee-----eEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICS-----SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~-----~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      |..||.++|+.+.+++ .....+.     .....  +. .++.+..+|.+..+|.++|+.+.......+....      .
T Consensus       157 l~a~d~~tG~~~W~~~-~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~------~  226 (377)
T TIGR03300       157 LTALDAATGERLWTYS-RVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRT------E  226 (377)
T ss_pred             EEEEEcCCCceeeEEc-cCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCC------c
Confidence            5678888888877776 3222111     11111  23 5778888999999999999877655432110000      0


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE-Ee--eeeeeccCe
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA-EM--EILDQSGGK  153 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~  153 (250)
                      ......+.-+|.    ..+..+++++.+|.+..+|.++++........   .......  .+..+. ..  +..-..+..
T Consensus       227 ~~~~~~~~~~p~----~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~---~~~~p~~--~~~~vyv~~~~G~l~~~d~~  297 (377)
T TIGR03300       227 LERLVDVDGDPV----VDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS---SYQGPAV--DDNRLYVTDADGVVVALDRR  297 (377)
T ss_pred             hhhhhccCCccE----EECCEEEEEEcCCEEEEEECCCCcEEEeeccC---CccCceE--eCCEEEEECCCCeEEEEECC
Confidence            000011111121    03557778888999999999998876554421   1111111  222222 11  100001111


Q ss_pred             eeeeeccccCccc-cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeE-EEecCCC
Q 025649          154 RLHLDYSVGGHTA-AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW-LCTTPTE  231 (250)
Q Consensus       154 ~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~  231 (250)
                      ..+.+........ ...+...     .+..+++++.+|.|+++|..++         +.+.....+...+.. .++.  +
T Consensus       298 tG~~~W~~~~~~~~~~ssp~i-----~g~~l~~~~~~G~l~~~d~~tG---------~~~~~~~~~~~~~~~sp~~~--~  361 (377)
T TIGR03300       298 SGSELWKNDELKYRQLTAPAV-----VGGYLVVGDFEGYLHWLSREDG---------SFVARLKTDGSGIASPPVVV--G  361 (377)
T ss_pred             CCcEEEccccccCCccccCEE-----ECCEEEEEeCCCEEEEEECCCC---------CEEEEEEcCCCccccCCEEE--C
Confidence            1122222211111 1111111     3568888999999999999998         454444444433322 2232  4


Q ss_pred             CCeEEEeeCCceEEEE
Q 025649          232 SENLVVCDTSKVVKVY  247 (250)
Q Consensus       232 ~~~l~s~~~d~~i~vw  247 (250)
                      + .|+.++.||.|..+
T Consensus       362 ~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       362 D-GLLVQTRDGDLYAF  376 (377)
T ss_pred             C-EEEEEeCCceEEEe
Confidence            4 58889999998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=2.7e-06  Score=68.81  Aligned_cols=151  Identities=17%  Similarity=0.133  Sum_probs=94.2

Q ss_pred             CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEe
Q 025649           32 WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN  111 (250)
Q Consensus        32 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d  111 (250)
                      +|+ +++|||.||+|.|-.+.+.+....+.++              .++.+++++|- +.-...+.+++|+.-| +.++.
T Consensus        82 ~Ge-y~asCS~DGkv~I~sl~~~~~~~~~df~--------------rpiksial~Pd-~~~~~sk~fv~GG~ag-lvL~e  144 (846)
T KOG2066|consen   82 EGE-YVASCSDDGKVVIGSLFTDDEITQYDFK--------------RPIKSIALHPD-FSRQQSKQFVSGGMAG-LVLSE  144 (846)
T ss_pred             CCc-eEEEecCCCcEEEeeccCCccceeEecC--------------CcceeEEeccc-hhhhhhhheeecCcce-EEEeh
Confidence            488 8999999999999999888887777755              67889999981 0001367888888877 66664


Q ss_pred             CCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCe
Q 025649          112 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL  191 (250)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~  191 (250)
                      -+--                                    ++...  ..+....++|.++.|.     |+++|-++.+ -
T Consensus       145 r~wl------------------------------------gnk~~--v~l~~~eG~I~~i~W~-----g~lIAWand~-G  180 (846)
T KOG2066|consen  145 RNWL------------------------------------GNKDS--VVLSEGEGPIHSIKWR-----GNLIAWANDD-G  180 (846)
T ss_pred             hhhh------------------------------------cCccc--eeeecCccceEEEEec-----CcEEEEecCC-C
Confidence            3310                                    00000  0234456899999996     6888888755 5


Q ss_pred             EEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          192 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       192 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      |++||....+.......+.   ...-.......+.|.+  ...++.|= ..+|+|..+
T Consensus       181 v~vyd~~~~~~l~~i~~p~---~~~R~e~fpphl~W~~--~~~LVIGW-~d~v~i~~I  232 (846)
T KOG2066|consen  181 VKVYDTPTRQRLTNIPPPS---QSVRPELFPPHLHWQD--EDRLVIGW-GDSVKICSI  232 (846)
T ss_pred             cEEEeccccceeeccCCCC---CCCCcccCCCceEecC--CCeEEEec-CCeEEEEEE
Confidence            8999999975543221111   0011112234567764  23455443 335666544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.65  E-value=7.8e-07  Score=71.24  Aligned_cols=213  Identities=13%  Similarity=0.059  Sum_probs=133.5

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec-CCCCCC-CCCCcccCCCceeEEecCCCcccCCCCCE
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF-GLPENN-GNAGQCYNPAFVHAIAIPDADMLDKTNKI   97 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (250)
                      ......|++|+.... +++.|+.||.+++-.+.+...-...+. ..+.+. -+..+..|...|.-+.|+.      +.+.
T Consensus        13 nnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe------~~QK   85 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE------NNQK   85 (1189)
T ss_pred             CCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc------cccc
Confidence            345688999999888 999999999999998875432211110 000111 1234556889999999997      8889


Q ss_pred             EEEEeCCCeEEEEeCCCceeEee-ccCCCCCCccceeecccceeEEEeeeeeecc------CeeeeeeccccCccccEEE
Q 025649           98 CVVAKGDGVVDVINIESELNISR-SKSTTKPLKGSQSTSKVNIRDAEMEILDQSG------GKRLHLDYSVGGHTAAASC  170 (250)
Q Consensus        98 l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~h~~~v~~  170 (250)
                      |-++..+|.|.+|-+-.+..... +....+..+.+++|+.||..++ +...|+..      +++. .-+.+++  .....
T Consensus        86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIc-IvYeDGavIVGsvdGNRI-wgKeLkg--~~l~h  161 (1189)
T KOG2041|consen   86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKIC-IVYEDGAVIVGSVDGNRI-WGKELKG--QLLAH  161 (1189)
T ss_pred             ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEE-EEEccCCEEEEeecccee-cchhcch--heccc
Confidence            99999999999999988775543 3444557899999999999887 33333321      1110 0112222  22347


Q ss_pred             EEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccc--ceeeeeeccCCceeEEEec-------CCCCCeEEEeeCC
Q 025649          171 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN--DLLIKNINLNKKVNWLCTT-------PTESENLVVCDTS  241 (250)
Q Consensus       171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~-------~~~~~~l~s~~~d  241 (250)
                      +.|+   ++.+.++.+-..|.+.++|.+..-........  .....+......+..+.|.       |+|...|+.+-.+
T Consensus       162 v~ws---~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n  238 (1189)
T KOG2041|consen  162 VLWS---EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN  238 (1189)
T ss_pred             eeec---ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence            8899   88888888888999999997653211100000  0000111112234455554       3455567887777


Q ss_pred             ceEEE
Q 025649          242 KVVKV  246 (250)
Q Consensus       242 ~~i~v  246 (250)
                      |.+.+
T Consensus       239 Gr~Qi  243 (1189)
T KOG2041|consen  239 GRMQI  243 (1189)
T ss_pred             ceehh
Confidence            77654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=7.9e-07  Score=71.22  Aligned_cols=196  Identities=10%  Similarity=0.055  Sum_probs=123.9

Q ss_pred             eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649           13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD   92 (250)
Q Consensus        13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   92 (250)
                      -+++. ||...|.-+.|+...+ .|-|...+|.|.+|-+-.|.....+....           ....|.++.|+.     
T Consensus        64 NQtLe-GH~~sV~vvTWNe~~Q-KLTtSDt~GlIiVWmlykgsW~EEMiNnR-----------nKSvV~SmsWn~-----  125 (1189)
T KOG2041|consen   64 NQTLE-GHNASVMVVTWNENNQ-KLTTSDTSGLIIVWMLYKGSWCEEMINNR-----------NKSVVVSMSWNL-----  125 (1189)
T ss_pred             hhhhc-cCcceEEEEEeccccc-cccccCCCceEEEEeeecccHHHHHhhCc-----------CccEEEEEEEcC-----
Confidence            35677 9999999999999988 89999999999999998887655443221           356789999998     


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----cCe-------eeeee---
Q 025649           93 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGK-------RLHLD---  158 (250)
Q Consensus        93 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------~~~~~---  158 (250)
                       +|..++....||.|.+=.++..+.-.....  ......+.|++|.+.++. +..++.    +.+       ...+.   
T Consensus       126 -dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~~Lf-~~ange~hlydnqgnF~~Kl~~~c~Vn~  201 (1189)
T KOG2041|consen  126 -DGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQALF-KKANGETHLYDNQGNFERKLEKDCEVNG  201 (1189)
T ss_pred             -CCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHHHHHh-hhcCCcEEEecccccHHHhhhhceEEee
Confidence             999999999999998877765443211111  134456788888766541 111110    000       00000   


Q ss_pred             -ccccCccccEEEEEee-----cCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649          159 -YSVGGHTAAASCVAFS-----MFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES  232 (250)
Q Consensus       159 -~~~~~h~~~v~~~~~~-----p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (250)
                       ..+......|..+.|.     |.-|+...|+.+-..|.+.|-.-.+..        ++  ......-.+....|++ +|
T Consensus       202 tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~--------~P--vv~dtgm~~vgakWnh-~G  270 (1189)
T KOG2041|consen  202 TGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP--------EP--VVVDTGMKIVGAKWNH-NG  270 (1189)
T ss_pred             eeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC--------CC--eEEecccEeecceecC-CC
Confidence             0011111123333331     111677889999999988887655532        22  2223335677788887 88


Q ss_pred             CeEEEeeCC
Q 025649          233 ENLVVCDTS  241 (250)
Q Consensus       233 ~~l~s~~~d  241 (250)
                      ..|+.++.+
T Consensus       271 ~vLAvcG~~  279 (1189)
T KOG2041|consen  271 AVLAVCGND  279 (1189)
T ss_pred             cEEEEccCc
Confidence            888887754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.64  E-value=7.1e-06  Score=62.83  Aligned_cols=118  Identities=15%  Similarity=0.124  Sum_probs=89.8

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCC-eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDS-KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI   97 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (250)
                      +|...|.-..+..+++ -++.|..|| .+-++|.++++..+...              .-..|.++..+|      +|+.
T Consensus       357 ~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e~kr~e~--------------~lg~I~av~vs~------dGK~  415 (668)
T COG4946         357 GKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGEVKRIEK--------------DLGNIEAVKVSP------DGKK  415 (668)
T ss_pred             CCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCceEEEeeC--------------CccceEEEEEcC------CCcE
Confidence            6778888888888888 789999999 89999999877544433              246799999998      9999


Q ss_pred             EEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCC
Q 025649           98 CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG  177 (250)
Q Consensus        98 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  177 (250)
                      ++++.....|.++|+.++.....-                                        +...+-|+...|+   
T Consensus       416 ~vvaNdr~el~vididngnv~~id----------------------------------------kS~~~lItdf~~~---  452 (668)
T COG4946         416 VVVANDRFELWVIDIDNGNVRLID----------------------------------------KSEYGLITDFDWH---  452 (668)
T ss_pred             EEEEcCceEEEEEEecCCCeeEec----------------------------------------ccccceeEEEEEc---
Confidence            999999999999999987643221                                        1223456777777   


Q ss_pred             CCCcEEEEeeCCC----eEEEEecCCC
Q 025649          178 ERGKYLISGGNDK----LVKVWDCSRF  200 (250)
Q Consensus       178 ~~~~~l~s~~~d~----~i~iwd~~~~  200 (250)
                      |+++++|-+--+|    .|+++|+..+
T Consensus       453 ~nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         453 PNSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             CCceeEEEecCcceeeeeEEEEecCCC
Confidence            6777777665444    6788888776

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.61  E-value=8e-05  Score=54.47  Aligned_cols=182  Identities=12%  Similarity=0.049  Sum_probs=106.7

Q ss_pred             eeeEEEc-CCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649           24 CSSVQFI-PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  102 (250)
Q Consensus        24 v~~l~~~-~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  102 (250)
                      ...+++. +++.  |+.+...+ +.++|+.+++.........        ........+.+++.|      +|++.++..
T Consensus        42 ~~G~~~~~~~g~--l~v~~~~~-~~~~d~~~g~~~~~~~~~~--------~~~~~~~~ND~~vd~------~G~ly~t~~  104 (246)
T PF08450_consen   42 PNGMAFDRPDGR--LYVADSGG-IAVVDPDTGKVTVLADLPD--------GGVPFNRPNDVAVDP------DGNLYVTDS  104 (246)
T ss_dssp             EEEEEEECTTSE--EEEEETTC-EEEEETTTTEEEEEEEEET--------TCSCTEEEEEEEE-T------TS-EEEEEE
T ss_pred             CceEEEEccCCE--EEEEEcCc-eEEEecCCCcEEEEeeccC--------CCcccCCCceEEEcC------CCCEEEEec
Confidence            5677777 6654  55555544 4555988875444333210        000134568899998      898777765


Q ss_pred             CC--------CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-------eeeecc-C---eeeeeeccccC
Q 025649          103 GD--------GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-------ILDQSG-G---KRLHLDYSVGG  163 (250)
Q Consensus       103 ~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~---~~~~~~~~~~~  163 (250)
                      ..        |.|..++.. ++.......  -.....++|+|+++.+....       ..+... .   ...+....+..
T Consensus       105 ~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~  181 (246)
T PF08450_consen  105 GGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG  181 (246)
T ss_dssp             CCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS
T ss_pred             CCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC
Confidence            43        567888887 443333222  25667899999998776321       122211 1   11222333343


Q ss_pred             ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe-EEEe
Q 025649          164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN-LVVC  238 (250)
Q Consensus       164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~  238 (250)
                      ..+..-.+++.   .+|++.++....+.|.++|.. +         +++....-....+++++|.-++... ++|.
T Consensus       182 ~~g~pDG~~vD---~~G~l~va~~~~~~I~~~~p~-G---------~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  182 GPGYPDGLAVD---SDGNLWVADWGGGRIVVFDPD-G---------KLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             SSCEEEEEEEB---TTS-EEEEEETTTEEEEEETT-S---------CEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CCcCCCcceEc---CCCCEEEEEcCCCEEEEECCC-c---------cEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            33457889999   899988888889999999988 5         4444444444588999995335444 4443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.60  E-value=1.6e-05  Score=68.27  Aligned_cols=194  Identities=11%  Similarity=0.088  Sum_probs=120.3

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEE----EccCCC--CccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMW----DFSKGR--PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT   94 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iw----d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (250)
                      .+.|.++.+.++.. .++.+..+|.|.+.    +..+..  .+..+                ...|.+++|||      |
T Consensus        75 ~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v----------------d~GI~a~~WSP------D  131 (928)
T PF04762_consen   75 NDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIEIVGSV----------------DSGILAASWSP------D  131 (928)
T ss_pred             CCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeEEEEEE----------------cCcEEEEEECC------C
Confidence            35788999999988 68888899999998    444332  23333                36799999999      9


Q ss_pred             CCEEEEEeCCCeEEEEeCCC-------------c----------eeEeecc------------CC-----------CCCC
Q 025649           95 NKICVVAKGDGVVDVINIES-------------E----------LNISRSK------------ST-----------TKPL  128 (250)
Q Consensus        95 ~~~l~~~~~d~~i~~~d~~~-------------~----------~~~~~~~------------~~-----------~~~~  128 (250)
                      +..|+....++++.+-+-.-             +          +....+.            .+           ....
T Consensus       132 ~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~  211 (928)
T PF04762_consen  132 EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDG  211 (928)
T ss_pred             cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCC
Confidence            99999999998887753220             0          0000000            00           1123


Q ss_pred             ccceeecccceeEEEeeeeeeccC--eeee-------eeccccCccccEEEEEeecCCCCCcEEEEeeC---CCeEEEEe
Q 025649          129 KGSQSTSKVNIRDAEMEILDQSGG--KRLH-------LDYSVGGHTAAASCVAFSMFGERGKYLISGGN---DKLVKVWD  196 (250)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~---d~~i~iwd  196 (250)
                      -..++|-.||.+++ +...+....  +..+       ....-+.-.+--.+++|.   |.|+++|+...   ...|.+|.
T Consensus       212 ~~~ISWRGDG~yFA-Vss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~Wr---PsG~lIA~~q~~~~~~~VvFfE  287 (928)
T PF04762_consen  212 RVRISWRGDGEYFA-VSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWR---PSGNLIASSQRLPDRHDVVFFE  287 (928)
T ss_pred             ceEEEECCCCcEEE-EEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCC---CCCCEEEEEEEcCCCcEEEEEe
Confidence            45677899999999 444332222  1111       111111111222467888   89999998764   34677777


Q ss_pred             cCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          197 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      -+....-      +..-........|..+.|++ |+..||..-.|. |++|-.
T Consensus       288 rNGLrhg------eF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~  332 (928)
T PF04762_consen  288 RNGLRHG------EFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTR  332 (928)
T ss_pred             cCCcEee------eEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEe
Confidence            5553211      22112224456799999997 999998877665 999954

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.59  E-value=8.5e-05  Score=53.76  Aligned_cols=203  Identities=11%  Similarity=0.060  Sum_probs=106.4

Q ss_pred             eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649           14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK   93 (250)
Q Consensus        14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (250)
                      +.+. +-...+..|+|+|+...++++....+.|...+. +|+.++.+.+.            ......++++..      
T Consensus        15 ~~l~-g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~------------g~~D~EgI~y~g------   74 (248)
T PF06977_consen   15 KPLP-GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLD------------GFGDYEGITYLG------   74 (248)
T ss_dssp             EE-T-T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-S------------S-SSEEEEEE-S------
T ss_pred             eECC-CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCC------------CCCCceeEEEEC------
Confidence            4555 666679999999987757788888899988887 58888888765            234567777775      


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCce----e--Ee--e--ccCCCCCCccceeecccceeEEEeeeeee------cc---Cee
Q 025649           94 TNKICVVAKGDGVVDVINIESEL----N--IS--R--SKSTTKPLKGSQSTSKVNIRDAEMEILDQ------SG---GKR  154 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~----~--~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~  154 (250)
                      ++.++++.-.++.+.++++....    .  ..  .  ...........++|+|.++.++.+.-.+.      ..   ...
T Consensus        75 ~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~  154 (248)
T PF06977_consen   75 NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD  154 (248)
T ss_dssp             TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred             CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc
Confidence            67777766678999999884311    1  11  1  11223456889999998766663321111      00   000


Q ss_pred             ee-----eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeec-c-----CCcee
Q 025649          155 LH-----LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-L-----NKKVN  223 (250)
Q Consensus       155 ~~-----~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~-----~~~v~  223 (250)
                      ..     ...........+.+++++|  ..+++++.....+.|..+|. .+....      .+....+ |     -...-
T Consensus       155 ~~~~~~~~~~~~~~~~~d~S~l~~~p--~t~~lliLS~es~~l~~~d~-~G~~~~------~~~L~~g~~gl~~~~~QpE  225 (248)
T PF06977_consen  155 LFVSDDQDLDDDKLFVRDLSGLSYDP--RTGHLLILSDESRLLLELDR-QGRVVS------SLSLDRGFHGLSKDIPQPE  225 (248)
T ss_dssp             -EEEE-HHHH-HT--SS---EEEEET--TTTEEEEEETTTTEEEEE-T-T--EEE------EEE-STTGGG-SS---SEE
T ss_pred             eeeccccccccccceeccccceEEcC--CCCeEEEEECCCCeEEEECC-CCCEEE------EEEeCCcccCcccccCCcc
Confidence            00     0000112334578999996  56788888888999999994 442211      1111111 1     12366


Q ss_pred             EEEecCCCCCeEEEeeCCceEEEE
Q 025649          224 WLCTTPTESENLVVCDTSKVVKVY  247 (250)
Q Consensus       224 ~~~~~~~~~~~l~s~~~d~~i~vw  247 (250)
                      .|++.+ +|. |+..+.-+..+++
T Consensus       226 GIa~d~-~G~-LYIvsEpNlfy~f  247 (248)
T PF06977_consen  226 GIAFDP-DGN-LYIVSEPNLFYRF  247 (248)
T ss_dssp             EEEE-T-T---EEEEETTTEEEEE
T ss_pred             EEEECC-CCC-EEEEcCCceEEEe
Confidence            788887 786 4444445544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.59  E-value=4e-05  Score=59.22  Aligned_cols=212  Identities=11%  Similarity=0.031  Sum_probs=127.1

Q ss_pred             cEEEEcccceeeeeeccCCCCC--ee-eEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSI--CS-SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~--v~-~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +.+||..++.++..+. +-..+  .. -+.|+-+.. +++=- ....+.++++...-....+..-            .+.
T Consensus       110 ~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~-y~ARv-v~~sl~i~e~t~n~~~~p~~~l------------r~~  174 (561)
T COG5354         110 VFVWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDK-YVARV-VGSSLYIHEITDNIEEHPFKNL------------RPV  174 (561)
T ss_pred             eeEEeccCceeEeecc-ccCCcccccceeeeeecch-hhhhh-ccCeEEEEecCCccccCchhhc------------ccc
Confidence            5799999999999998 66555  44 678888887 55443 3347999997322221112111            246


Q ss_pred             ceeEEecCCCcccCCCCCEEEEE-----eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC-
Q 025649           79 FVHAIAIPDADMLDKTNKICVVA-----KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG-  152 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~-----~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  152 (250)
                      .+....|+|..    ++..|+.-     ...+.+++|.+..+..+...... ...-..+.|.+.|.+++.....+.... 
T Consensus       175 gi~dFsisP~~----n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf-k~~~~qLkW~~~g~~ll~l~~t~~ksnK  249 (561)
T COG5354         175 GILDFSISPEG----NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF-KVSGVQLKWQVLGKYLLVLVMTHTKSNK  249 (561)
T ss_pred             ceeeEEecCCC----CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-eecccEEEEecCCceEEEEEEEeeeccc
Confidence            78888899821    33344432     56789999999865544332221 123456788899988874222222110 


Q ss_pred             -----eeeee-------eccccCccccEEEEEeecCCCCCcEEEE--eeCCCeEEEEecCCCcceecccccceeeeeecc
Q 025649          153 -----KRLHL-------DYSVGGHTAAASCVAFSMFGERGKYLIS--GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL  218 (250)
Q Consensus       153 -----~~~~~-------~~~~~~h~~~v~~~~~~p~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  218 (250)
                           ..+..       +.....-.++|...+|.   |.++.+++  |-.+-.+.++|++..          +  .+...
T Consensus       250 syfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~---p~S~~F~vi~g~~pa~~s~~~lr~N----------l--~~~~P  314 (561)
T COG5354         250 SYFGESNLYLLRITERSIPVEKDLKDPVHDFTWE---PLSSRFAVISGYMPASVSVFDLRGN----------L--RFYFP  314 (561)
T ss_pred             ceeccceEEEEeecccccceeccccccceeeeec---ccCCceeEEecccccceeecccccc----------e--EEecC
Confidence                 01111       11111346889999999   66665544  457889999999983          2  33344


Q ss_pred             CCceeEEEecCCCCCeEEEeeCC---ceEEEEeC
Q 025649          219 NKKVNWLCTTPTESENLVVCDTS---KVVKVYSI  249 (250)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~s~~~d---~~i~vw~~  249 (250)
                      ...-+.+.|+| .+++++.++.|   |.|-+||.
T Consensus       315 e~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~  347 (561)
T COG5354         315 EQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDP  347 (561)
T ss_pred             CcccccccccC-cccEEEEecCCccccceEEecc
Confidence            44555666776 66676665543   55666653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.58  E-value=3.5e-05  Score=65.47  Aligned_cols=168  Identities=14%  Similarity=0.084  Sum_probs=96.0

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec-------------C--CC--CCCCCCC-----cc---
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF-------------G--LP--ENNGNAG-----QC---   74 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-------------~--~~--~~~~~~~-----~~---   74 (250)
                      -.+.|.+++|+||.+ .++-.+..+++.+-+- +..++..-..             +  ..  +..+..+     ..   
T Consensus       108 vd~GI~aaswS~Dee-~l~liT~~~tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~  185 (1265)
T KOG1920|consen  108 VDNGISAASWSPDEE-LLALITGRQTLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEK  185 (1265)
T ss_pred             ccCceEEEeecCCCc-EEEEEeCCcEEEEEec-cccchhccccccccccccccceecccccceeeecchhhhcccccccc
Confidence            356899999999999 7888888777766543 1111111111             0  00  0000000     00   


Q ss_pred             -------cCCCceeEEecCCCcccCCCCCEEEEE-----eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE
Q 025649           75 -------YNPAFVHAIAIPDADMLDKTNKICVVA-----KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus        75 -------~~~~~v~~~~~~~~~~~~~~~~~l~~~-----~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (250)
                             -..+.-.++.|.-      ||.++++.     .....|++||-+ |..... ..+....-.+++|-|.|..++
T Consensus       186 ek~~~~~~~~~~~~~IsWRg------Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~-se~~~~l~~~LsWkPsgs~iA  257 (1265)
T KOG1920|consen  186 EKALEQIEQDDHKTSISWRG------DGEYFAVSFVESETGTRKIRVYDRE-GALNST-SEPVEGLQHSLSWKPSGSLIA  257 (1265)
T ss_pred             cccccchhhccCCceEEEcc------CCcEEEEEEEeccCCceeEEEeccc-chhhcc-cCcccccccceeecCCCCeEe
Confidence                   0011223467775      89999884     233799999988 332222 222235567899999999998


Q ss_pred             Eeeeeeecc---------CeeeeeeccccCccccEEEEEeecCCCCCcEEEE---eeCCCeEEEEecCCC
Q 025649          143 EMEILDQSG---------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS---GGNDKLVKVWDCSRF  200 (250)
Q Consensus       143 ~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s---~~~d~~i~iwd~~~~  200 (250)
                      ++.....-.         ....+..-.+......+..++|+   .++..|+.   ......|++|-+.+.
T Consensus       258 ~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn---s~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  258 AIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN---SNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeeecCCCCcEEEEecCCccccccccCCcccccchheeeec---CCCCceeeeecccccceEEEEEecCe
Confidence            644321111         11111112233333458999999   89998887   444556999988775

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.57  E-value=1.9e-05  Score=60.88  Aligned_cols=115  Identities=12%  Similarity=-0.006  Sum_probs=82.1

Q ss_pred             EEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEe
Q 025649            5 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA   84 (250)
Q Consensus         5 wd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   84 (250)
                      |+..+...-..+. .-.-++..+++||.|. +|++.... .|.+|+-.....+..+.               ...|..+.
T Consensus        17 ~~~~s~~~~~~~~-~~~~p~~~~~~SP~G~-~l~~~~~~-~V~~~~g~~~~~l~~~~---------------~~~V~~~~   78 (561)
T COG5354          17 WNSQSEVIHTRFE-SENWPVAYVSESPLGT-YLFSEHAA-GVECWGGPSKAKLVRFR---------------HPDVKYLD   78 (561)
T ss_pred             ecCcccccccccc-ccCcchhheeecCcch-heehhhcc-ceEEccccchhheeeee---------------cCCceecc
Confidence            4444433333444 4556889999999998 78776654 58899988776666665               24689999


Q ss_pred             cCCCcccCCCCCEEEEEeCCC---------------eEEEEeCCCceeEeeccCCCCC--CccceeecccceeEEE
Q 025649           85 IPDADMLDKTNKICVVAKGDG---------------VVDVINIESELNISRSKSTTKP--LKGSQSTSKVNIRDAE  143 (250)
Q Consensus        85 ~~~~~~~~~~~~~l~~~~~d~---------------~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  143 (250)
                      |+|      ++++|.+-+...               .+.+||..++..+..+......  .-.-+.|+-+.++.+.
T Consensus        79 fSP------~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR  148 (561)
T COG5354          79 FSP------NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVAR  148 (561)
T ss_pred             cCc------ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhh
Confidence            999      999998876543               4899999999988777665443  2336778888777663

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.56  E-value=0.00017  Score=63.32  Aligned_cols=214  Identities=13%  Similarity=0.019  Sum_probs=113.7

Q ss_pred             eeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec-CCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe-
Q 025649           25 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF-GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-  102 (250)
Q Consensus        25 ~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-  102 (250)
                      ..+++++.+..++++-+.++.|+++|.. +..+..+.. +.............-...+.+++.+      +++.|+++. 
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~------~gn~LYVaDt  643 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA------KKNLLYVADT  643 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC------CCCEEEEEeC
Confidence            4688887543378888889999999985 443333321 1000000000001122347788887      777665554 


Q ss_pred             CCCeEEEEeCCCceeEeeccCC---------------CCCCccceeeccc-ceeEEEe------eeeeeccCeeeee---
Q 025649          103 GDGVVDVINIESELNISRSKST---------------TKPLKGSQSTSKV-NIRDAEM------EILDQSGGKRLHL---  157 (250)
Q Consensus       103 ~d~~i~~~d~~~~~~~~~~~~~---------------~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~---  157 (250)
                      .++.|+++|+.++.........               .-.....++++|+ +..+++.      ..++.........   
T Consensus       644 ~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~  723 (1057)
T PLN02919        644 ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGD  723 (1057)
T ss_pred             CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecC
Confidence            5678999999876543211100               0112356889984 4444431      1122111110000   


Q ss_pred             --eccccC------ccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceeccccc----ceeeeee--------
Q 025649          158 --DYSVGG------HTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINN----DLLIKNI--------  216 (250)
Q Consensus       158 --~~~~~~------h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~--------  216 (250)
                        .....+      .-.....++++   |+++ ++++-+.++.|++||+.++.........    ..+..+.        
T Consensus       724 G~~~~~~g~~~~~~~~~~P~GIavs---pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~  800 (1057)
T PLN02919        724 GYERNLNGSSGTSTSFAQPSGISLS---PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE  800 (1057)
T ss_pred             CccccCCCCccccccccCccEEEEe---CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence              000111      11245679999   7877 5556667899999999875321100000    0000000        


Q ss_pred             ccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          217 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ..-.....+++.+ +|.++++-..++.|++||.
T Consensus       801 ~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~  832 (1057)
T PLN02919        801 VLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDP  832 (1057)
T ss_pred             hhccCCceeeEeC-CCcEEEEECCCCEEEEEEC
Confidence            0112356788887 7888888888999999986

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.55  E-value=6.6e-05  Score=58.60  Aligned_cols=203  Identities=13%  Similarity=0.003  Sum_probs=102.4

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |..+|.++|+.+.+.. .. +.+.+.-.. .+. .++.++.+|.|..||.++|+.+..+....              ...
T Consensus       117 l~ald~~tG~~~W~~~-~~-~~~~~~p~v-~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~--------------~~~  178 (377)
T TIGR03300       117 VIALDAEDGKELWRAK-LS-SEVLSPPLV-ANG-LVVVRTNDGRLTALDAATGERLWTYSRVT--------------PAL  178 (377)
T ss_pred             EEEEECCCCcEeeeec-cC-ceeecCCEE-ECC-EEEEECCCCeEEEEEcCCCceeeEEccCC--------------Cce
Confidence            4556777777776655 22 222211111 233 56667788999999999998877765331              111


Q ss_pred             EEe--cCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCC---Cc-------cceeecccceeEEE-----e
Q 025649           82 AIA--IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP---LK-------GSQSTSKVNIRDAE-----M  144 (250)
Q Consensus        82 ~~~--~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~~-----~  144 (250)
                      .+.  .+|..    .+..++.+..++.+..+|+++++...........   .+       ....+. ++..++.     .
T Consensus       179 ~~~~~~sp~~----~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~~vy~~~~~g~l  253 (377)
T TIGR03300       179 TLRGSASPVI----ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD-GGQVYAVSYQGRV  253 (377)
T ss_pred             eecCCCCCEE----ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE-CCEEEEEEcCCEE
Confidence            010  11211    2346778888899999999998866543221100   00       011111 2222221     0


Q ss_pred             eeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC-cee
Q 025649          145 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVN  223 (250)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~  223 (250)
                      ..++..   ..+.+.....  .......     ..+..++.++.||.+..+|..+++..         -....... ...
T Consensus       254 ~a~d~~---tG~~~W~~~~--~~~~~p~-----~~~~~vyv~~~~G~l~~~d~~tG~~~---------W~~~~~~~~~~s  314 (377)
T TIGR03300       254 AALDLR---SGRVLWKRDA--SSYQGPA-----VDDNRLYVTDADGVVVALDRRSGSEL---------WKNDELKYRQLT  314 (377)
T ss_pred             EEEECC---CCcEEEeecc--CCccCce-----EeCCEEEEECCCCeEEEEECCCCcEE---------EccccccCCccc
Confidence            111211   1111112111  1111122     23467777788999999999988422         11111111 111


Q ss_pred             EEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          224 WLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       224 ~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ....   .+..+++++.+|.|.++|.
T Consensus       315 sp~i---~g~~l~~~~~~G~l~~~d~  337 (377)
T TIGR03300       315 APAV---VGGYLVVGDFEGYLHWLSR  337 (377)
T ss_pred             cCEE---ECCEEEEEeCCCEEEEEEC
Confidence            1122   2447888889999998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.54  E-value=3.4e-05  Score=62.78  Aligned_cols=217  Identities=12%  Similarity=0.093  Sum_probs=133.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCC-----------CeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWK-----------PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN   70 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~-----------~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~   70 (250)
                      |.+.|..+-+.++.+. -|...|+.+.|.|-.           .-+|+++.-.|.|.+||...+..+..++.        
T Consensus        37 V~VVDs~s~q~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~--------  107 (1062)
T KOG1912|consen   37 VSVVDSRSLQLIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSH--------  107 (1062)
T ss_pred             EEEEehhhhhhhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcC--------
Confidence            5677888888999999 999999999998742           12677888899999999998877777762        


Q ss_pred             CCcccCCCceeEEecCCCcccCCCC-CEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc-cceeEEEeeee-
Q 025649           71 AGQCYNPAFVHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK-VNIRDAEMEIL-  147 (250)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-  147 (250)
                           +.+.+..+.|-|..   ++. ..|++-.....+.+|+..+|+........+ ....|+.+.| |.+.+...+.. 
T Consensus       108 -----~~~~~qdl~W~~~r---d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~l~s~g  178 (1062)
T KOG1912|consen  108 -----SNDSVQDLCWVPAR---DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCVLGSKG  178 (1062)
T ss_pred             -----CCcchhheeeeecc---CcchheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcceEEEEccCc
Confidence                 35677778776521   133 567777888999999999998776655442 5556677766 33333211110 


Q ss_pred             ------eeccCe---eeeeeccccCccc----------------c---------EEEEEeecCCCCCcEEEEeeCCCeEE
Q 025649          148 ------DQSGGK---RLHLDYSVGGHTA----------------A---------ASCVAFSMFGERGKYLISGGNDKLVK  193 (250)
Q Consensus       148 ------~~~~~~---~~~~~~~~~~h~~----------------~---------v~~~~~~p~~~~~~~l~s~~~d~~i~  193 (250)
                            +.-..+   ..+..+.-..|..                .         ....+|+   |.-+.++-...-+.+.
T Consensus       179 ~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~---p~~rn~lfi~~prell  255 (1062)
T KOG1912|consen  179 FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS---PHWRNILFITFPRELL  255 (1062)
T ss_pred             eEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC---hhhhceEEEEeccceE
Confidence                  000000   1111111111110                0         1134556   4444444444567899


Q ss_pred             EEecCCCcceecccccceeeeeeccCCceeEEEecCC-CCCeEEEeeCCceEEEEe
Q 025649          194 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT-ESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       194 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~vw~  248 (250)
                      ++|++-..+         +....-..+.+.-+.+.|. ..+.|++.-.||.+.+|-
T Consensus       256 v~dle~~~~---------l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv  302 (1062)
T KOG1912|consen  256 VFDLEYECC---------LAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV  302 (1062)
T ss_pred             EEcchhhce---------eEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence            999988633         3333333344445666661 233578888899999984

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.53  E-value=2.1e-06  Score=67.25  Aligned_cols=78  Identities=15%  Similarity=0.161  Sum_probs=63.2

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      .....|.+++++|+.+ .|+.|..||+|.+||...+..... +              ..-....++|+|      +|..+
T Consensus       257 pL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t~~~-k--------------a~~~P~~iaWHp------~gai~  314 (545)
T PF11768_consen  257 PLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGVTLLA-K--------------AEFIPTLIAWHP------DGAIF  314 (545)
T ss_pred             ecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCeeeee-e--------------ecccceEEEEcC------CCcEE
Confidence            4778999999999999 899999999999999876533222 2              123457899999      99999


Q ss_pred             EEEeCCCeEEEEeCCCceeE
Q 025649           99 VVAKGDGVVDVINIESELNI  118 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~~  118 (250)
                      ++|+..|.+.+||+.-....
T Consensus       315 ~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  315 VVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             EEEcCCceEEEEEeecCccc
Confidence            99999999999999764433

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.53  E-value=9.5e-06  Score=65.78  Aligned_cols=162  Identities=11%  Similarity=0.093  Sum_probs=112.3

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc----cC-C-C
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM----LD-K-T   94 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~-~-~   94 (250)
                      ...-.++.|+|.|  +|+-|+. ..|.+-|..+.+.+..+..+             +..|+.+.|.|...    +. + .
T Consensus        15 ~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqsie~h-------------~s~V~~VrWap~~~p~~llS~~~~   78 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQSIELH-------------QSAVTSVRWAPAPSPRDLLSPSSS   78 (1062)
T ss_pred             cccccccccCccc--eEEEecC-ceEEEEehhhhhhhhccccC-------------ccceeEEEeccCCCchhccCcccc
Confidence            3446789999998  6887775 47888899998988888744             68899999988532    12 1 2


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEee
Q 025649           95 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS  174 (250)
Q Consensus        95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  174 (250)
                      .-+|+++...|.|.+||...+..+                                        ..+..|..++..+.|-
T Consensus        79 ~lliAsaD~~GrIil~d~~~~s~~----------------------------------------~~l~~~~~~~qdl~W~  118 (1062)
T KOG1912|consen   79 QLLIASADISGRIILVDFVLASVI----------------------------------------NWLSHSNDSVQDLCWV  118 (1062)
T ss_pred             ceeEEeccccCcEEEEEehhhhhh----------------------------------------hhhcCCCcchhheeee
Confidence            346788888999999999864322                                        2445566777888888


Q ss_pred             cCCCCC-cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649          175 MFGERG-KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY  247 (250)
Q Consensus       175 p~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw  247 (250)
                      |+.++. .+|+.-....++.+|+..+|+         .+-....-.....++.+.|-|.+.+..-+..|.+.+-
T Consensus       119 ~~rd~Srd~LlaIh~ss~lvLwntdtG~---------k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~  183 (1062)
T KOG1912|consen  119 PARDDSRDVLLAIHGSSTLVLWNTDTGE---------KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC  183 (1062)
T ss_pred             eccCcchheeEEecCCcEEEEEEccCCc---------eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence            765666 456665667899999999983         3222222223344477778777777776667766554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.52  E-value=0.00015  Score=53.08  Aligned_cols=193  Identities=11%  Similarity=0.014  Sum_probs=113.0

Q ss_pred             eeEEEcC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC
Q 025649           25 SSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG  103 (250)
Q Consensus        25 ~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~  103 (250)
                      .+..|.+ ++. ++++--..+.|..|+..+++.. .+..+              . ..++++..     ++ ..++.+..
T Consensus         3 Egp~~d~~~g~-l~~~D~~~~~i~~~~~~~~~~~-~~~~~--------------~-~~G~~~~~-----~~-g~l~v~~~   59 (246)
T PF08450_consen    3 EGPVWDPRDGR-LYWVDIPGGRIYRVDPDTGEVE-VIDLP--------------G-PNGMAFDR-----PD-GRLYVADS   59 (246)
T ss_dssp             EEEEEETTTTE-EEEEETTTTEEEEEETTTTEEE-EEESS--------------S-EEEEEEEC-----TT-SEEEEEET
T ss_pred             cceEEECCCCE-EEEEEcCCCEEEEEECCCCeEE-EEecC--------------C-CceEEEEc-----cC-CEEEEEEc
Confidence            3678888 555 7788778899999999876542 23322              2 56677763     15 45555555


Q ss_pred             CCeEEEEeCCCceeEeeccC---C-CCCCccceeecccceeEEEeeeeeeccCe----------eeeeeccccCccccEE
Q 025649          104 DGVVDVINIESELNISRSKS---T-TKPLKGSQSTSKVNIRDAEMEILDQSGGK----------RLHLDYSVGGHTAAAS  169 (250)
Q Consensus       104 d~~i~~~d~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~h~~~v~  169 (250)
                      .+ +.++|..+++.......   . .......+++.|+|++.++..........          ..+ ...+...-...+
T Consensus        60 ~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~~~~pN  137 (246)
T PF08450_consen   60 GG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVADGLGFPN  137 (246)
T ss_dssp             TC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEEEEESSEE
T ss_pred             Cc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCe-EEEEecCccccc
Confidence            44 56669988765543332   1 34667889999999977753222111100          011 111112234568


Q ss_pred             EEEeecCCCCCcEEE-EeeCCCeEEEEecCCCcc-eecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649          170 CVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQG-VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY  247 (250)
Q Consensus       170 ~~~~~p~~~~~~~l~-s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw  247 (250)
                      .++|+   |+++.|+ +-+..+.|..+++..... ...   .+.+.......+..-.+++.+ +|.+.++.-..+.|.++
T Consensus       138 Gi~~s---~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~  210 (246)
T PF08450_consen  138 GIAFS---PDGKTLYVADSFNGRIWRFDLDADGGELSN---RRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVF  210 (246)
T ss_dssp             EEEEE---TTSSEEEEEETTTTEEEEEEEETTTCCEEE---EEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEE
T ss_pred             ceEEC---CcchheeecccccceeEEEeccccccceee---eeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEE
Confidence            89999   8887665 667788999999865322 110   011111222223477888886 88877776678888888


Q ss_pred             eC
Q 025649          248 SI  249 (250)
Q Consensus       248 ~~  249 (250)
                      +.
T Consensus       211 ~p  212 (246)
T PF08450_consen  211 DP  212 (246)
T ss_dssp             ET
T ss_pred             CC
Confidence            74

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=2.7e-06  Score=64.48  Aligned_cols=179  Identities=15%  Similarity=0.131  Sum_probs=118.1

Q ss_pred             eeeeeccCCCCCeeeEEEcCCCCeEEEEecC-CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649           12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM   90 (250)
Q Consensus        12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   90 (250)
                      .+..+. .|-..|.+++.+-++- ++.|.+. |..++++|+.+-..+..++...           -|..+..+ .+|.  
T Consensus        45 fVKhFr-aHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-----------lPg~a~wv-~skG--  108 (558)
T KOG0882|consen   45 FVKHFR-AHLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVENFDMINMIKLVD-----------LPGFAEWV-TSKG--  108 (558)
T ss_pred             ehhhhH-HHHHHHHhhhccccce-eEeeccCcccceeEEEeeccchhhhccccc-----------CCCceEEe-cCCC--
Confidence            445566 7888999999999997 8999777 9999999998877665555331           22333222 2220  


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEE
Q 025649           91 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC  170 (250)
Q Consensus        91 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  170 (250)
                       +.-..+.++...++.+.++|-....+.                                      ....-.-|..+|.+
T Consensus       109 -d~~s~IAVs~~~sg~i~VvD~~~d~~q--------------------------------------~~~fkklH~sPV~~  149 (558)
T KOG0882|consen  109 -DKISLIAVSLFKSGKIFVVDGFGDFCQ--------------------------------------DGYFKKLHFSPVKK  149 (558)
T ss_pred             -CeeeeEEeecccCCCcEEECCcCCcCc--------------------------------------cceecccccCceEE
Confidence             001133344457789999988753311                                      11223458899999


Q ss_pred             EEeecCCCCCcEEEEeeCCCeEEEEecCC-Ccceec-----ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649          171 VAFSMFGERGKYLISGGNDKLVKVWDCSR-FQGVQT-----SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV  244 (250)
Q Consensus       171 ~~~~p~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  244 (250)
                      +.++   +-+.-+++....|.|.-|.... .+.+..     .....-+..+..-.....++.++| ++..+.+-+.|..|
T Consensus       150 i~y~---qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkV  225 (558)
T KOG0882|consen  150 IRYN---QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKV  225 (558)
T ss_pred             EEee---ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEE
Confidence            9999   7888999998899999998874 111110     000111122223345577889998 88889998899999


Q ss_pred             EEEeC
Q 025649          245 KVYSI  249 (250)
Q Consensus       245 ~vw~~  249 (250)
                      +++++
T Consensus       226 R~F~~  230 (558)
T KOG0882|consen  226 RGFVF  230 (558)
T ss_pred             EEEEe
Confidence            99875

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.42  E-value=2e-06  Score=70.71  Aligned_cols=173  Identities=10%  Similarity=0.112  Sum_probs=102.3

Q ss_pred             eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce----------
Q 025649           11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV----------   80 (250)
Q Consensus        11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----------   80 (250)
                      +..+.|+ .|+...+|++|+-+.. .|+.|+..|.|+++++.+|......+.+...........-..-..          
T Consensus      1092 r~w~~fr-d~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1092 RSWRSFR-DETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             ccchhhh-ccccceeeEEeecCCc-eEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            3455677 8889999999999888 899999999999999999887666653311100000000000011          


Q ss_pred             ------------------eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC---CCCCccceeecccce
Q 025649           81 ------------------HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST---TKPLKGSQSTSKVNI  139 (250)
Q Consensus        81 ------------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  139 (250)
                                        .++.|+.      ....-+.|..-....+||++++..+......   ....-.+..|+|+..
T Consensus      1170 aLW~~~s~~~~~Hsf~ed~~vkFsn------~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDEDKAVKFSN------SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred             HHhccccccCccccccccceeehhh------hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence                              1122221      1112233333456788888887655442221   113346788999998


Q ss_pred             eEEEee-eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649          140 RDAEME-ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV  203 (250)
Q Consensus       140 ~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~  203 (250)
                      +++-.| .||.+..   +.++.|......+ .-.|+   |+|..++.-++     |||+++..-+
T Consensus      1244 LIlndGvLWDvR~~---~aIh~FD~ft~~~-~G~FH---P~g~eVIINSE-----IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1244 LILNDGVLWDVRIP---EAIHRFDQFTDYG-GGGFH---PSGNEVIINSE-----IWDMRTFKLL 1296 (1516)
T ss_pred             eEeeCceeeeeccH---HHHhhhhhheecc-ccccc---CCCceEEeech-----hhhhHHHHHH
Confidence            888544 3555544   3344444333222 23578   88888887765     8999986443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.40  E-value=2.6e-06  Score=61.73  Aligned_cols=186  Identities=11%  Similarity=0.100  Sum_probs=103.0

Q ss_pred             CCeeeEEEcCC-CCeEEEEecCCCeEEEEEccCCC--Cccc------eec--C----------CCCCCCC-C--------
Q 025649           22 SICSSVQFIPW-KPWEVISGGLDSKLVMWDFSKGR--PNKI------VNF--G----------LPENNGN-A--------   71 (250)
Q Consensus        22 ~~v~~l~~~~~-~~~~l~s~s~dg~v~iwd~~~~~--~~~~------~~~--~----------~~~~~~~-~--------   71 (250)
                      ..|..+.|..+ +...++..+.|.+|++|.+....  .+..      +..  +          .|....+ .        
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r  165 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR  165 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence            36778888654 44467778899999999986431  1110      000  0          0000000 0        


Q ss_pred             -CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec
Q 025649           72 -GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS  150 (250)
Q Consensus        72 -~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (250)
                       ..-.|+-.+.++.++.      +...++++ .|=.|.+|++.-..                            +++.+.
T Consensus       166 vyaNaH~yhiNSiS~Ns------D~et~lSa-DdLrINLWnl~i~D----------------------------~sFnIV  210 (460)
T COG5170         166 VYANAHPYHINSISFNS------DKETLLSA-DDLRINLWNLEIID----------------------------GSFNIV  210 (460)
T ss_pred             eccccceeEeeeeeecC------chheeeec-cceeeeeccccccC----------------------------CceEEE
Confidence             1122445566777775      55555554 56778888886311                            111111


Q ss_pred             cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce-ec-----c-cccceeeeeeccCCcee
Q 025649          151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV-QT-----S-INNDLLIKNINLNKKVN  223 (250)
Q Consensus       151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~-----~-~~~~~~~~~~~~~~~v~  223 (250)
                      +.++    ..+..-..-|++..|+|  ...+.+.-.+..|.|++-|++....- ..     . -.+--...+.+-...|.
T Consensus       211 DiKP----~nmeeLteVItSaeFhp--~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSIS  284 (460)
T COG5170         211 DIKP----HNMEELTEVITSAEFHP--EMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSIS  284 (460)
T ss_pred             eccC----ccHHHHHHHHhhcccCH--hHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhc
Confidence            1110    11222234678889996  45567777788999999999853211 00     0 00000111223345677


Q ss_pred             EEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          224 WLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       224 ~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .+.|++ +|+++++-+. -++++||++
T Consensus       285 D~kFs~-ngryIlsRdy-ltvkiwDvn  309 (460)
T COG5170         285 DFKFSD-NGRYILSRDY-LTVKIWDVN  309 (460)
T ss_pred             ceEEcC-CCcEEEEecc-ceEEEEecc
Confidence            888987 8888888764 479999974

>smart00320 WD40 WD40 repeats

Probab=98.39  E-value=1.4e-06  Score=43.09  Aligned_cols=39  Identities=33%  Similarity=0.523  Sum_probs=34.8

Q ss_pred             ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEE
Q 025649           10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWD   50 (250)
Q Consensus        10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd   50 (250)
                      ++.+..+. .|...|.++.|++.+. ++++++.|+.+++|+
T Consensus         2 ~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLK-GHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEE-ecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            45667788 8999999999999987 899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=3.3e-06  Score=66.62  Aligned_cols=95  Identities=8%  Similarity=0.042  Sum_probs=77.7

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee-EEecCCCcccCCCCCEEE
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH-AIAIPDADMLDKTNKICV   99 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~l~   99 (250)
                      ...|..+.|+|.-+ ++|.+..+|.|.+..+. .+.+.++..+             ...+. +++|.|      ||+.|+
T Consensus        20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwtip~p-------------~~~v~~sL~W~~------DGklla   78 (665)
T KOG4640|consen   20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWTIPIP-------------GENVTASLCWRP------DGKLLA   78 (665)
T ss_pred             ccceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEeccCC-------------CCccceeeeecC------CCCEEE
Confidence            34688999999999 99999999999999997 7777787744             23444 999999      999999


Q ss_pred             EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc
Q 025649          100 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK  136 (250)
Q Consensus       100 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  136 (250)
                      +|-.||+|++.|.+++..+..........+.++.|++
T Consensus        79 Vg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   79 VGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            9999999999999998877765444446666666653

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.34  E-value=0.00016  Score=52.11  Aligned_cols=170  Identities=12%  Similarity=0.161  Sum_probs=94.3

Q ss_pred             CcEEEEcccceeeeeeccCC------CCCeeeEEEcCCC-----CeEEEEecCCCeEEEEEccCC-----CCccceecCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGH------SSICSSVQFIPWK-----PWEVISGGLDSKLVMWDFSKG-----RPNKIVNFGL   64 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h------~~~v~~l~~~~~~-----~~~l~s~s~dg~v~iwd~~~~-----~~~~~~~~~~   64 (250)
                      +|+++|+.. ..+..+..++      ..+|..|.|.+..     ...|+.-..+|.++-|-+..+     +..+.+.+. 
T Consensus        66 ~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~-  143 (282)
T PF15492_consen   66 TIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS-  143 (282)
T ss_pred             eEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEec-
Confidence            588999864 4444444122      3567778776543     225777778888888876432     333444432 


Q ss_pred             CCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC-----------eEEEEeCCCceeEeeccCCCCCCcccee
Q 025649           65 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-----------VVDVINIESELNISRSKSTTKPLKGSQS  133 (250)
Q Consensus        65 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~  133 (250)
                               ...+..|.++.++|      ..++|++|+...           -+..|.+-++..-..........+.   
T Consensus       144 ---------~~yp~Gi~~~vy~p------~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~---  205 (282)
T PF15492_consen  144 ---------SHYPHGINSAVYHP------KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT---  205 (282)
T ss_pred             ---------ccCCCceeEEEEcC------CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc---
Confidence                     12467899999998      667777765321           2344444433322111100000000   


Q ss_pred             ecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649          134 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  201 (250)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~  201 (250)
                      -.+..     -+.+.   ....+...........|..+..|   |+|..|++...+|.|.+|++.+..
T Consensus       206 ~~~~~-----~~~~~---~~~~~~fs~~~~~~d~i~kmSlS---Pdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  206 ASSKR-----RGLLR---IPSFKFFSRQGQEQDGIFKMSLS---PDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             ccccc-----cceee---ccceeeeeccccCCCceEEEEEC---CCCCEEEEEEcCCeEEEEecCcch
Confidence            00000     00000   00111111112245679999999   899999999999999999999873

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.31  E-value=5.2e-06  Score=68.31  Aligned_cols=135  Identities=16%  Similarity=0.151  Sum_probs=97.0

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC---------CCeEEEEEccCCCCccceecCCCCCCCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---------DSKLVMWDFSKGRPNKIVNFGLPENNGNA   71 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~   71 (250)
                      ||.+-|+.+.+.+.++. +|++.|.++...  |. +|++|+.         |.-|++||++..+.+..+.+.        
T Consensus       198 ~V~LrD~~s~~~iht~~-aHs~siSDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~--------  265 (1118)
T KOG1275|consen  198 TVFLRDPNSFETIHTFD-AHSGSISDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP--------  265 (1118)
T ss_pred             eEEeecCCcCceeeeee-ccccceeeeecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcccc--------
Confidence            47788999999999999 999999887765  44 8888876         556899999988877766644        


Q ss_pred             CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc
Q 025649           72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG  151 (250)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (250)
                            ..-.-+.|.|     .-...+++++..|...+-|..+-...                 +.+             
T Consensus       266 ------~~P~flrf~P-----sl~t~~~V~S~sGq~q~vd~~~lsNP-----------------~~~-------------  304 (1118)
T KOG1275|consen  266 ------YGPQFLRFHP-----SLTTRLAVTSQSGQFQFVDTATLSNP-----------------PAG-------------  304 (1118)
T ss_pred             ------cCchhhhhcc-----cccceEEEEecccceeeccccccCCC-----------------ccc-------------
Confidence                  1224456666     35678889999999999885431100                 000             


Q ss_pred             CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEec
Q 025649          152 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  197 (250)
Q Consensus       152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~  197 (250)
                            +..+..-...+.++.++   ++++.++.|..+|.|.+|--
T Consensus       305 ------~~~v~p~~s~i~~fDiS---sn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  305 ------VKMVNPNGSGISAFDIS---SNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ------eeEEccCCCcceeEEec---CCCceEEEecccCcEeeecC
Confidence                  01112223347888888   89999999999999999973

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.31  E-value=6e-07  Score=70.83  Aligned_cols=200  Identities=16%  Similarity=0.133  Sum_probs=117.2

Q ss_pred             CCeeeEEEcCCCC-eEEEEecCCCeEEEEEccCCCCc-cceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649           22 SICSSVQFIPWKP-WEVISGGLDSKLVMWDFSKGRPN-KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV   99 (250)
Q Consensus        22 ~~v~~l~~~~~~~-~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~   99 (250)
                      ..+.|+++.-+.. -+++.|..+|.|.+-..+...-. +.+..+            +....++++|++     .|.+.||
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~------------~ar~Ct~lAwne-----LDtn~LA  119 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPG------------YARPCTSLAWNE-----LDTNHLA  119 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccc------------cccccccccccc-----ccHHHHH
Confidence            4566777654332 37889999999999887654322 222222            456788999998     4778888


Q ss_pred             EEe----CCCeEEEEeCCCcee--E--eeccCCCCCCccceeecccceeEEEeeeeeeccCe---eeeeeccccCccccE
Q 025649          100 VAK----GDGVVDVINIESELN--I--SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK---RLHLDYSVGGHTAAA  168 (250)
Q Consensus       100 ~~~----~d~~i~~~d~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v  168 (250)
                      +|-    .|..+.+||+.++..  .  ..+.........+++|..+.+.+. .|........   +..+.....-....+
T Consensus       120 agldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvl-aGm~sr~~~ifdlRqs~~~~~svnTk~v  198 (783)
T KOG1008|consen  120 AGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVL-AGMTSRSVHIFDLRQSLDSVSSVNTKYV  198 (783)
T ss_pred             hhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhh-cccccchhhhhhhhhhhhhhhhhhhhhc
Confidence            883    467899999998622  1  111111223444666666666665 3322211100   000001111123356


Q ss_pred             EEEEeecCCCCCcEEEEeeCCCeEEEEe-cCCCcceecccccceeeeeec----cCCceeEEEecCCCCCeEEEeeCC-c
Q 025649          169 SCVAFSMFGERGKYLISGGNDKLVKVWD-CSRFQGVQTSINNDLLIKNIN----LNKKVNWLCTTPTESENLVVCDTS-K  242 (250)
Q Consensus       169 ~~~~~~p~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d-~  242 (250)
                      ..+...||.  ++|+++-. ||.|.+|| .++-+.        ++.....    ....+..++|+|.....+++...| +
T Consensus       199 qG~tVdp~~--~nY~cs~~-dg~iAiwD~~rnien--------pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~  267 (783)
T KOG1008|consen  199 QGITVDPFS--PNYFCSNS-DGDIAIWDTYRNIEN--------PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSI  267 (783)
T ss_pred             ccceecCCC--CCceeccc-cCceeeccchhhhcc--------HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcc
Confidence            677888644  46777665 99999999 554322        1111111    122488999999766677777754 6


Q ss_pred             eEEEEeCC
Q 025649          243 VVKVYSIS  250 (250)
Q Consensus       243 ~i~vw~~~  250 (250)
                      +|++|++.
T Consensus       268 tIrlydi~  275 (783)
T KOG1008|consen  268 TIRLYDIC  275 (783)
T ss_pred             eEEEeccc
Confidence            88988863

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.29  E-value=0.00068  Score=51.73  Aligned_cols=217  Identities=14%  Similarity=0.092  Sum_probs=111.6

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEE---EcCCC---CeEEEEecC----------CCeEEEEEccCC-C---Cccce-
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQ---FIPWK---PWEVISGGL----------DSKLVMWDFSKG-R---PNKIV-   60 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~---~~~~~---~~~l~s~s~----------dg~v~iwd~~~~-~---~~~~~-   60 (250)
                      |++.|..+.+.+..+.......+.+++   +..+.   ..+|+.|..          .|.|.++++... .   .+..+ 
T Consensus         4 i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~   83 (321)
T PF03178_consen    4 IRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH   83 (321)
T ss_dssp             EEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE
T ss_pred             EEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE
Confidence            789999888887766522334455544   33321   347777643          289999999874 1   11111 


Q ss_pred             ecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce-eEeeccCCCCCCccceeecccce
Q 025649           61 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL-NISRSKSTTKPLKGSQSTSKVNI  139 (250)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  139 (250)
                      ...            .+..|++++.-       +++ |+++. ++.|.+|++...+ ............+.++...  +.
T Consensus        84 ~~~------------~~g~V~ai~~~-------~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~  140 (321)
T PF03178_consen   84 STE------------VKGPVTAICSF-------NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KN  140 (321)
T ss_dssp             EEE------------ESS-EEEEEEE-------TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TT
T ss_pred             EEe------------ecCcceEhhhh-------CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--cc
Confidence            111            34678887765       355 44443 4889999998877 4443333322344444444  33


Q ss_pred             eEEEeee-------eeec-cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccce
Q 025649          140 RDAEMEI-------LDQS-GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL  211 (250)
Q Consensus       140 ~~~~~~~-------~~~~-~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  211 (250)
                      +++ ++.       .... .......+.. ......++++.|-   ++++.++.+..+|.+.++...............+
T Consensus       141 ~I~-vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l---~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L  215 (321)
T PF03178_consen  141 YIL-VGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFL---VDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKL  215 (321)
T ss_dssp             EEE-EEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE----SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBE
T ss_pred             EEE-EEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEe---cCCcEEEEEcCCCeEEEEEECCCCcccccccccc
Confidence            444 221       1000 1122222222 2234568888887   5667999999999999998864221111100012


Q ss_pred             ee-eeeccCCceeEE---EecCC--CCC-----eEEEeeCCceEEE
Q 025649          212 LI-KNINLNKKVNWL---CTTPT--ESE-----NLVVCDTSKVVKV  246 (250)
Q Consensus       212 ~~-~~~~~~~~v~~~---~~~~~--~~~-----~l~s~~~d~~i~v  246 (250)
                      .. ........|+++   ...|.  +..     .++-++.+|.|.+
T Consensus       216 ~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  216 ERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             EEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             eeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            11 223344567777   44441  222     3777788888863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=3e-05  Score=63.06  Aligned_cols=147  Identities=12%  Similarity=0.088  Sum_probs=97.9

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  100 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  100 (250)
                      .+.++|++++..   .|+-|+-+|.|++.+... .....+.              |...            +.+|.++++
T Consensus        39 ~D~is~~av~~~---~~~~GtH~g~v~~~~~~~-~~~~~~~--------------~s~~------------~~~Gey~as   88 (846)
T KOG2066|consen   39 NDAISCCAVHDK---FFALGTHRGAVYLTTCQG-NPKTNFD--------------HSSS------------ILEGEYVAS   88 (846)
T ss_pred             hhHHHHHHhhcc---eeeeccccceEEEEecCC-ccccccc--------------cccc------------ccCCceEEE
Confidence            456677777654   799999999999999853 3222221              1111            138999999


Q ss_pred             EeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecC--CC
Q 025649          101 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF--GE  178 (250)
Q Consensus       101 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~  178 (250)
                      |+.||+|.+-.+-+.+...                                        ++ ....++.+++++|.  ..
T Consensus        89 CS~DGkv~I~sl~~~~~~~----------------------------------------~~-df~rpiksial~Pd~~~~  127 (846)
T KOG2066|consen   89 CSDDGKVVIGSLFTDDEIT----------------------------------------QY-DFKRPIKSIALHPDFSRQ  127 (846)
T ss_pred             ecCCCcEEEeeccCCccce----------------------------------------eE-ecCCcceeEEeccchhhh
Confidence            9999999998877644221                                        11 12356888999842  11


Q ss_pred             CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          179 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       179 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ..+.+++|+.-| +.++.-+-....      .. .....-.++|.++.|   .|.+||=++.+| |++||+.
T Consensus       128 ~sk~fv~GG~ag-lvL~er~wlgnk------~~-v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~  187 (846)
T KOG2066|consen  128 QSKQFVSGGMAG-LVLSERNWLGNK------DS-VVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTP  187 (846)
T ss_pred             hhhheeecCcce-EEEehhhhhcCc------cc-eeeecCccceEEEEe---cCcEEEEecCCC-cEEEecc
Confidence            256889999888 777765433211      11 134556678999999   466888899887 8999863

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.18  E-value=0.00016  Score=58.45  Aligned_cols=144  Identities=14%  Similarity=0.050  Sum_probs=88.3

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEe--c-------------------------------------C
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG--G-------------------------------------L   42 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~--s-------------------------------------~   42 (250)
                      +.+.|.++.+....+.  -.+....++++|+|++.++++  +                                     .
T Consensus       217 vSvID~etmeV~~qV~--Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~  294 (635)
T PRK02888        217 FTAVDAETMEVAWQVM--VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIG  294 (635)
T ss_pred             EEEEECccceEEEEEE--eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEEC
Confidence            5667888888777776  223446778888888434443  1                                     1


Q ss_pred             CCeEEEEEccC-----CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCce
Q 025649           43 DSKLVMWDFSK-----GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESEL  116 (250)
Q Consensus        43 dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~  116 (250)
                      ++.|.+.|..+     .+.+..+.              -+...+.++++|      ||+++++++ .+.++.++|+.+.+
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP--------------VGKsPHGV~vSP------DGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP--------------VPKNPHGVNTSP------DGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE--------------CCCCccceEECC------CCCEEEEeCCCCCcEEEEEChhhh
Confidence            13355555544     22333333              345678899998      999887765 48999999998744


Q ss_pred             eEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEe
Q 025649          117 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  196 (250)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd  196 (250)
                      .....+           +.|....                 ..+.+--.+ ....+|.   ++|+...|-..|..|..||
T Consensus       355 ~~~~~~-----------~~~~~~v-----------------vaevevGlG-PLHTaFD---g~G~aytslf~dsqv~kwn  402 (635)
T PRK02888        355 DLFDGK-----------IKPRDAV-----------------VAEPELGLG-PLHTAFD---GRGNAYTTLFLDSQIVKWN  402 (635)
T ss_pred             hhhhcc-----------CCccceE-----------------EEeeccCCC-cceEEEC---CCCCEEEeEeecceeEEEe
Confidence            321111           0111111                 112222223 3456788   7888888888899999999


Q ss_pred             cCC
Q 025649          197 CSR  199 (250)
Q Consensus       197 ~~~  199 (250)
                      +..
T Consensus       403 ~~~  405 (635)
T PRK02888        403 IEA  405 (635)
T ss_pred             hHH
Confidence            876

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=0.00034  Score=57.75  Aligned_cols=187  Identities=12%  Similarity=0.028  Sum_probs=108.9

Q ss_pred             EcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC---
Q 025649           29 FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---  105 (250)
Q Consensus        29 ~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~---  105 (250)
                      |++.+. .++.|+.+|.|.+.+-. -+.+..++..            ..+.+..+-...      +..+|++.+.|+   
T Consensus        31 ~~s~~~-~vvigt~~G~V~~Ln~s-~~~~~~fqa~------------~~siv~~L~~~~------~~~~L~sv~Ed~~~n   90 (933)
T KOG2114|consen   31 CSSSTG-SVVIGTADGRVVILNSS-FQLIRGFQAY------------EQSIVQFLYILN------KQNFLFSVGEDEQGN   90 (933)
T ss_pred             EcCCCc-eEEEeeccccEEEeccc-ceeeehheec------------chhhhhHhhccc------CceEEEEEeecCCCC
Confidence            456666 79999999998877642 2333444422            111233333322      345777776654   


Q ss_pred             --eEEEEeCCCc---e---eE-----eeccCC-CCCCccceeecccceeEEEeeeeeeccC--------eeeeeeccccC
Q 025649          106 --VVDVINIESE---L---NI-----SRSKST-TKPLKGSQSTSKVNIRDAEMEILDQSGG--------KRLHLDYSVGG  163 (250)
Q Consensus       106 --~i~~~d~~~~---~---~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~  163 (250)
                        .+++||++.-   .   +.     .....+ ...++.+++.+.+-+.++ +|..++.+.        .+.....-...
T Consensus        91 p~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv-~Gf~nG~V~~~~GDi~RDrgsr~~~~~~  169 (933)
T KOG2114|consen   91 PVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIV-CGFTNGLVICYKGDILRDRGSRQDYSHR  169 (933)
T ss_pred             ceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEE-EEecCcEEEEEcCcchhccccceeeecc
Confidence              5899999752   1   11     111222 346778888888866666 666555431        11111111123


Q ss_pred             ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCce
Q 025649          164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV  243 (250)
Q Consensus       164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  243 (250)
                      .+.+|+.+++.   .++.-++-......|.+|.+....        +.+.....|+.+.++..+++..++ |++++.. .
T Consensus       170 ~~~pITgL~~~---~d~~s~lFv~Tt~~V~~y~l~gr~--------p~~~~ld~~G~~lnCss~~~~t~q-fIca~~e-~  236 (933)
T KOG2114|consen  170 GKEPITGLALR---SDGKSVLFVATTEQVMLYSLSGRT--------PSLKVLDNNGISLNCSSFSDGTYQ-FICAGSE-F  236 (933)
T ss_pred             CCCCceeeEEe---cCCceeEEEEecceeEEEEecCCC--------cceeeeccCCccceeeecCCCCcc-EEEecCc-e
Confidence            45789999998   677663333345689999998542        233446677788888888865554 4444433 4


Q ss_pred             EEEEeC
Q 025649          244 VKVYSI  249 (250)
Q Consensus       244 i~vw~~  249 (250)
                      +.+|+.
T Consensus       237 l~fY~s  242 (933)
T KOG2114|consen  237 LYFYDS  242 (933)
T ss_pred             EEEEcC
Confidence            777764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.17  E-value=0.0017  Score=51.12  Aligned_cols=213  Identities=8%  Similarity=0.004  Sum_probs=107.0

Q ss_pred             cEEEEcccceeeeeeccCCCCCee-eEEEcC--CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICS-SVQFIP--WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~-~l~~~~--~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |.-+|.++|+.+..+. .....+. ...-+|  .+. .++.++.+|.+...|..+|+.+.......+....      ...
T Consensus       172 l~ald~~tG~~~W~~~-~~~~~~~~~~~~sP~v~~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~------~~~  243 (394)
T PRK11138        172 LQALNESDGAVKWTVN-LDVPSLTLRGESAPATAFG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT------EID  243 (394)
T ss_pred             EEEEEccCCCEeeeec-CCCCcccccCCCCCEEECC-EEEEEcCCCEEEEEEccCChhhheeccccCCCcc------chh
Confidence            4567888888887776 2211100 000111  122 4666788899999999999887766533110000      000


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe-----eeeeeccCe
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM-----EILDQSGGK  153 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  153 (250)
                      ....+..+|..    .+..++.++.+|.+..+|..+++.........   ...+... ++..++..     -..+...  
T Consensus       244 ~~~~~~~sP~v----~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~~~-~~~vy~~~~~g~l~ald~~t--  313 (394)
T PRK11138        244 RLVDVDTTPVV----VGGVVYALAYNGNLVALDLRSGQIVWKREYGS---VNDFAVD-GGRIYLVDQNDRVYALDTRG--  313 (394)
T ss_pred             cccccCCCcEE----ECCEEEEEEcCCeEEEEECCCCCEEEeecCCC---ccCcEEE-CCEEEEEcCCCeEEEEECCC--
Confidence            01111223321    34567777789999999999998775543221   1111111 11211110     0111111  


Q ss_pred             eeeeeccccCcc-ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeE-EEecCCC
Q 025649          154 RLHLDYSVGGHT-AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW-LCTTPTE  231 (250)
Q Consensus       154 ~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~  231 (250)
                       .+.+-....-. ....+....     +.+++.++.||.+...|..++         +.+....-....+.+ ..+.  +
T Consensus       314 -G~~~W~~~~~~~~~~~sp~v~-----~g~l~v~~~~G~l~~ld~~tG---------~~~~~~~~~~~~~~s~P~~~--~  376 (394)
T PRK11138        314 -GVELWSQSDLLHRLLTAPVLY-----NGYLVVGDSEGYLHWINREDG---------RFVAQQKVDSSGFLSEPVVA--D  376 (394)
T ss_pred             -CcEEEcccccCCCcccCCEEE-----CCEEEEEeCCCEEEEEECCCC---------CEEEEEEcCCCcceeCCEEE--C
Confidence             11111111000 111122222     356778889999999999998         333333222222222 1221  3


Q ss_pred             CCeEEEeeCCceEEEEeCC
Q 025649          232 SENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       232 ~~~l~s~~~d~~i~vw~~~  250 (250)
                      + .|+.++.||.+..++++
T Consensus       377 ~-~l~v~t~~G~l~~~~~~  394 (394)
T PRK11138        377 D-KLLIQARDGTVYAITRP  394 (394)
T ss_pred             C-EEEEEeCCceEEEEeCC
Confidence            3 68889999999988753

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=6.6e-06  Score=61.57  Aligned_cols=80  Identities=16%  Similarity=0.118  Sum_probs=65.1

Q ss_pred             eccccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          158 DYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      ..-+.+|...|..++|+|   ..+ ++..++.+..|+|.|+++.         .....+..+ ..+++++|.-++..+|+
T Consensus       186 sq~lp~~g~~IrdlafSp---~~~GLl~~asl~nkiki~dlet~---------~~vssy~a~-~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSP---FNEGLLGLASLGNKIKIMDLETS---------CVVSSYIAY-NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             hhcccccchhhhhhccCc---cccceeeeeccCceEEEEecccc---------eeeeheecc-CCceeeeeccCCcceeE
Confidence            345667888999999994   444 7888999999999999996         344444555 88999999987777889


Q ss_pred             EeeCCceEEEEeCC
Q 025649          237 VCDTSKVVKVYSIS  250 (250)
Q Consensus       237 s~~~d~~i~vw~~~  250 (250)
                      .|..+|.|.+||++
T Consensus       253 aGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMR  266 (463)
T ss_pred             EeccCceEEEEEcc
Confidence            99999999999985

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.14  E-value=0.00047  Score=42.70  Aligned_cols=67  Identities=12%  Similarity=0.080  Sum_probs=51.3

Q ss_pred             eeeEEEc---CCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649           24 CSSVQFI---PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  100 (250)
Q Consensus        24 v~~l~~~---~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  100 (250)
                      |++|++.   .+|...|+.||.|..||+|+-  .+.+..+.              ..+.+.++.-..       +..++.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~--------------e~~~v~~L~~~~-------~~~F~Y   58 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT--------------ETDKVTSLCSLG-------GGRFAY   58 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe--------------cccceEEEEEcC-------CCEEEE
Confidence            5566654   466568999999999999985  35566665              246788887774       578999


Q ss_pred             EeCCCeEEEEeCC
Q 025649          101 AKGDGVVDVINIE  113 (250)
Q Consensus       101 ~~~d~~i~~~d~~  113 (250)
                      +..+|+|-+|+-.
T Consensus        59 ~l~NGTVGvY~~~   71 (111)
T PF14783_consen   59 ALANGTVGVYDRS   71 (111)
T ss_pred             EecCCEEEEEeCc
Confidence            9999999999874

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.13  E-value=0.0015  Score=48.35  Aligned_cols=201  Identities=10%  Similarity=-0.001  Sum_probs=115.1

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCe-EEEEEccCCCCccceecCCCCCCCCCCcccCCCce-eEEecCCCcccCCCCCEEEE
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSK-LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV-HAIAIPDADMLDKTNKICVV  100 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~l~~  100 (250)
                      ....++.+|.....++.+-.-|+ ..+||.++++....+..+.            .... --..|++      +|++|++
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~------------gRHFyGHg~fs~------dG~~Lyt   67 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP------------GRHFYGHGVFSP------DGRLLYT   67 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC------------CCEEecCEEEcC------CCCEEEE
Confidence            34578889966546677766664 7899999999887776330            1111 1356787      9999998


Q ss_pred             EeC-----CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE-eeeeeec--------------------cCee
Q 025649          101 AKG-----DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE-MEILDQS--------------------GGKR  154 (250)
Q Consensus       101 ~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------------~~~~  154 (250)
                      .-.     .|.|-|||...+...........-....+.+.|||+.|+. .|.....                    +...
T Consensus        68 TEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s  147 (305)
T PF07433_consen   68 TENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS  147 (305)
T ss_pred             eccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence            843     5899999999433333222233355677889999966652 2211111                    0111


Q ss_pred             eeeecc--c--cCccccEEEEEeecCCCCCcEEEEeeCCC-------eEEEEecCCCcceecccccceeeeeeccCCcee
Q 025649          155 LHLDYS--V--GGHTAAASCVAFSMFGERGKYLISGGNDK-------LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN  223 (250)
Q Consensus       155 ~~~~~~--~--~~h~~~v~~~~~~p~~~~~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (250)
                      .+.+.+  +  .-|...|..+++.   ++|..++..-..|       .|.+++....  .....-++  .......+-+-
T Consensus       148 G~ll~q~~Lp~~~~~lSiRHLa~~---~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~--~~~~~l~~Y~g  220 (305)
T PF07433_consen  148 GALLEQVELPPDLHQLSIRHLAVD---GDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPE--EQWRRLNGYIG  220 (305)
T ss_pred             CceeeeeecCccccccceeeEEec---CCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCCh--HHHHhhCCceE
Confidence            222222  3  2366678888888   6776555543332       2333333221  10000000  01123344577


Q ss_pred             EEEecCCCCCeE-EEeeCCceEEEEeC
Q 025649          224 WLCTTPTESENL-VVCDTSKVVKVYSI  249 (250)
Q Consensus       224 ~~~~~~~~~~~l-~s~~~d~~i~vw~~  249 (250)
                      ++++++ ++..+ +|+=..+.+.+||.
T Consensus       221 SIa~~~-~g~~ia~tsPrGg~~~~~d~  246 (305)
T PF07433_consen  221 SIAADR-DGRLIAVTSPRGGRVAVWDA  246 (305)
T ss_pred             EEEEeC-CCCEEEEECCCCCEEEEEEC
Confidence            889986 67666 45557889999985

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.11  E-value=6.4e-05  Score=60.40  Aligned_cols=124  Identities=14%  Similarity=0.155  Sum_probs=88.0

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV   99 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~   99 (250)
                      |...|.=-+++..++ +++.|+.-|.|.+|+-..++....-..+            ....+....+++      +..++|
T Consensus        32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~------------~~~~~~~~~vs~------~e~lvA   92 (726)
T KOG3621|consen   32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEG------------ATGITCVRSVSS------VEYLVA   92 (726)
T ss_pred             CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcccccC------------ccceEEEEEecc------hhHhhh
Confidence            344455555666677 8999999999999998766554332211            234556667777      888899


Q ss_pred             EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649          100 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER  179 (250)
Q Consensus       100 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  179 (250)
                      .|+..|.|.++-+..+.....                  .++.                .--+.|+..|+++.|+   ++
T Consensus        93 agt~~g~V~v~ql~~~~p~~~------------------~~~t----------------~~d~~~~~rVTal~Ws---~~  135 (726)
T KOG3621|consen   93 AGTASGRVSVFQLNKELPRDL------------------DYVT----------------PCDKSHKCRVTALEWS---KN  135 (726)
T ss_pred             hhcCCceEEeehhhccCCCcc------------------eeec----------------cccccCCceEEEEEec---cc
Confidence            999999999998876321110                  0000                0112388999999999   89


Q ss_pred             CcEEEEeeCCCeEEEEecCC
Q 025649          180 GKYLISGGNDKLVKVWDCSR  199 (250)
Q Consensus       180 ~~~l~s~~~d~~i~iwd~~~  199 (250)
                      +..+.+|...|+|..-.+.+
T Consensus       136 ~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  136 GMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccEEeecCCCceEEEEEech
Confidence            99999999999999988877

>smart00320 WD40 WD40 repeats

Probab=98.11  E-value=8.3e-06  Score=40.16  Aligned_cols=36  Identities=44%  Similarity=0.771  Sum_probs=31.4

Q ss_pred             eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEe
Q 025649          158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  196 (250)
Q Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd  196 (250)
                      ...+..|...|.++.|.   +++.++++++.|+.+++||
T Consensus         5 ~~~~~~~~~~i~~~~~~---~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFS---PDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEEC---CCCCEEEEecCCCeEEEcC
Confidence            44566788899999999   7779999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.10  E-value=0.00062  Score=55.21  Aligned_cols=142  Identities=15%  Similarity=0.098  Sum_probs=87.3

Q ss_pred             CCCEEEE-EeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEE
Q 025649           94 TNKICVV-AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA  172 (250)
Q Consensus        94 ~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  172 (250)
                      +|+.+.. .-..+.+.+.|.++.+....+...  .....+.++|+|++++. .+.+.......   ..+...... ..+.
T Consensus       203 DGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spdGk~afv-TsyNsE~G~tl---~em~a~e~d-~~vv  275 (635)
T PRK02888        203 DGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFS-TCYNSEEGVTL---AEMMAAERD-WVVV  275 (635)
T ss_pred             CCCEeecccceeEEEEEEECccceEEEEEEeC--CCcccceECCCCCEEEE-eccCcccCcce---eeeccccCc-eEEE
Confidence            6765533 335678888999887666555554  45677899999999983 33222222211   122111111 3444


Q ss_pred             eec-----CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE-eeCCceEEE
Q 025649          173 FSM-----FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV-CDTSKVVKV  246 (250)
Q Consensus       173 ~~p-----~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d~~i~v  246 (250)
                      |++     ..++|++...+  ++.|.+.|.++..+..     ..+..+..-...+..+.++| ||+++++ +..+..|.|
T Consensus       276 fni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~-----~~v~~yIPVGKsPHGV~vSP-DGkylyVanklS~tVSV  347 (635)
T PRK02888        276 FNIARIEEAVKAGKFKTIG--GSKVPVVDGRKAANAG-----SALTRYVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTV  347 (635)
T ss_pred             EchHHHHHhhhCCCEEEEC--CCEEEEEECCccccCC-----cceEEEEECCCCccceEECC-CCCEEEEeCCCCCcEEE
Confidence            442     11467766653  6789999998811000     23345566777888999998 8888766 456899999


Q ss_pred             EeCC
Q 025649          247 YSIS  250 (250)
Q Consensus       247 w~~~  250 (250)
                      .|++
T Consensus       348 IDv~  351 (635)
T PRK02888        348 IDVR  351 (635)
T ss_pred             EECh
Confidence            9873

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.07  E-value=0.0015  Score=51.46  Aligned_cols=166  Identities=11%  Similarity=-0.004  Sum_probs=93.8

Q ss_pred             ceeeeeeccCCCCCeeeEEEcCCCCeEEEEe--cCC-CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecC
Q 025649           10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISG--GLD-SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIP   86 (250)
Q Consensus        10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~--s~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   86 (250)
                      +...+.+. .-...+..-+|+|+++.+....  ... ..+.++|+.+++........              ..-...+|+
T Consensus       182 g~~~~~l~-~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~--------------g~~~~P~fs  246 (425)
T COG0823         182 GYNQQKLT-DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN--------------GNNGAPAFS  246 (425)
T ss_pred             CcceeEec-ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC--------------CccCCccCC
Confidence            44555555 4456677888999997322221  222 46999999988876666533              334556788


Q ss_pred             CCcccCCCCCEEEEE-eCCCe--EEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC-----eeeeee
Q 025649           87 DADMLDKTNKICVVA-KGDGV--VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG-----KRLHLD  158 (250)
Q Consensus        87 ~~~~~~~~~~~l~~~-~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  158 (250)
                      |      +|+.|+.+ ..||.  |.++|+.++.... +... ...-..-.|+|||+.++......+...     ......
T Consensus       247 p------DG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~  318 (425)
T COG0823         247 P------DGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNG-FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV  318 (425)
T ss_pred             C------CCCEEEEEECCCCCccEEEEcCCCCccee-cccC-CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence            8      88776555 55665  5566777766333 2222 244447889999999985422222110     000000


Q ss_pred             ccccCccccEEEEEeecCCCCCcEEEEeeC-CCe--EEEEecCCCc
Q 025649          159 YSVGGHTAAASCVAFSMFGERGKYLISGGN-DKL--VKVWDCSRFQ  201 (250)
Q Consensus       159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~~--i~iwd~~~~~  201 (250)
                      ..+....+.-..-.++   |+|++++..+. +|.  |.+.|+.++.
T Consensus       319 ~riT~~~~~~~~p~~S---pdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         319 TRLTFSGGGNSNPVWS---PDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             eEeeccCCCCcCccCC---CCCCEEEEEeccCCceeeEEeccCCCC
Confidence            1111111111144566   89998887764 344  6667776653

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.04  E-value=0.00045  Score=57.88  Aligned_cols=149  Identities=15%  Similarity=0.127  Sum_probs=92.1

Q ss_pred             EEEE-ecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCC
Q 025649           36 EVIS-GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  114 (250)
Q Consensus        36 ~l~s-~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~  114 (250)
                      +|+. ......|.-.|++.|+.+..+..+            ...+|..++-.. -+-......-+.|-.++.+..||.+-
T Consensus       495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~------------~~~~v~~~~p~~-K~aqlt~e~tflGls~n~lfriDpR~  561 (794)
T PF08553_consen  495 MILLDPNNPNKLYKMDLERGKVVEEWKVH------------DDIPVVDIAPDS-KFAQLTNEQTFLGLSDNSLFRIDPRL  561 (794)
T ss_pred             eEeecCCCCCceEEEecCCCcEEEEeecC------------CCcceeEecccc-cccccCCCceEEEECCCceEEeccCC
Confidence            4443 345678999999999999999866            222244443221 00001234556777788899999984


Q ss_pred             ce-eEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEE
Q 025649          115 EL-NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK  193 (250)
Q Consensus       115 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~  193 (250)
                      .. .+..                                .   ..+.+ ......+|++-+   .+| +||.|+.+|.||
T Consensus       562 ~~~k~v~--------------------------------~---~~k~Y-~~~~~Fs~~aTt---~~G-~iavgs~~G~IR  601 (794)
T PF08553_consen  562 SGNKLVD--------------------------------S---QSKQY-SSKNNFSCFATT---EDG-YIAVGSNKGDIR  601 (794)
T ss_pred             CCCceee--------------------------------c---ccccc-ccCCCceEEEec---CCc-eEEEEeCCCcEE
Confidence            21 0000                                0   00122 233456777766   444 799999999999


Q ss_pred             EEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          194 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       194 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      +||-- +.        .....+.+...+|..|..+. ||++++..+ +..+.|++
T Consensus       602 Lyd~~-g~--------~AKT~lp~lG~pI~~iDvt~-DGkwilaTc-~tyLlLi~  645 (794)
T PF08553_consen  602 LYDRL-GK--------RAKTALPGLGDPIIGIDVTA-DGKWILATC-KTYLLLID  645 (794)
T ss_pred             eeccc-ch--------hhhhcCCCCCCCeeEEEecC-CCcEEEEee-cceEEEEE
Confidence            99943 21        22234457788999999986 999887766 44455554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.03  E-value=0.0021  Score=55.40  Aligned_cols=198  Identities=12%  Similarity=0.081  Sum_probs=121.0

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  100 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  100 (250)
                      .+.|.++.|..+.. -++.+..+|.|.+-|..+......-.              -...|.+++|+|      |+..++.
T Consensus        68 d~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~eivg~--------------vd~GI~aaswS~------Dee~l~l  126 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTN-SICVITALGDIILVDPETLELEIVGN--------------VDNGISAASWSP------DEELLAL  126 (1265)
T ss_pred             CcceEEEEEecccc-eEEEEecCCcEEEEcccccceeeeee--------------ccCceEEEeecC------CCcEEEE
Confidence            35899999999888 68888888999988887664322222              236799999999      9999999


Q ss_pred             EeCCCeEEEEeC----CCceeE-------------------eeccCC--------------------CCCCccceeeccc
Q 025649          101 AKGDGVVDVINI----ESELNI-------------------SRSKST--------------------TKPLKGSQSTSKV  137 (250)
Q Consensus       101 ~~~d~~i~~~d~----~~~~~~-------------------~~~~~~--------------------~~~~~~~~~~~~~  137 (250)
                      .+..+++.+-+-    -..+.+                   ..+...                    ....-..+.|--|
T Consensus       127 iT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD  206 (1265)
T KOG1920|consen  127 ITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD  206 (1265)
T ss_pred             EeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC
Confidence            888887765432    111111                   000000                    0112334788889


Q ss_pred             ceeEEEeeeeeeccCeeeeeec---ccc----CccccEEEEEeecCCCCCcEEEEe---eCCCeEEEEecCCCcceeccc
Q 025649          138 NIRDAEMEILDQSGGKRLHLDY---SVG----GHTAAASCVAFSMFGERGKYLISG---GNDKLVKVWDCSRFQGVQTSI  207 (250)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~---~~~----~h~~~v~~~~~~p~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~  207 (250)
                      |++++..........+..+...   .+.    .-.+.-.+++|-   |.|..+++-   ..|+.|.+|.-+....-    
T Consensus       207 g~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWk---Psgs~iA~iq~~~sd~~IvffErNGL~hg----  279 (1265)
T KOG1920|consen  207 GEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWK---PSGSLIAAIQCKTSDSDIVFFERNGLRHG----  279 (1265)
T ss_pred             CcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeec---CCCCeEeeeeecCCCCcEEEEecCCcccc----
Confidence            9999854433333322221110   011    112233578998   788888874   34668999986654211    


Q ss_pred             ccceeeeeeccCCceeEEEecCCCCCeEEE---eeCCceEEEEeC
Q 025649          208 NNDLLIKNINLNKKVNWLCTTPTESENLVV---CDTSKVVKVYSI  249 (250)
Q Consensus       208 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s---~~~d~~i~vw~~  249 (250)
                        +..........+|..++|+. ++..|++   ......|++|-+
T Consensus       280 --~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  280 --EFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             --ccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEe
Confidence              22112222333489999997 7888877   455556999964

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.02  E-value=0.0006  Score=57.20  Aligned_cols=136  Identities=12%  Similarity=0.112  Sum_probs=86.6

Q ss_pred             cEEEEcccceeeeeeccCCCCC-eeeEEEcC-----CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSI-CSSVQFIP-----WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~-v~~l~~~~-----~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      |+-.|++.|+.+...+ .|... |..++-..     +.. .-+.|-.+..|..||.+-.... .....       .....
T Consensus       506 ly~mDLe~GKVV~eW~-~~~~~~v~~~~p~~K~aqlt~e-~tflGls~n~lfriDpR~~~~k-~v~~~-------~k~Y~  575 (794)
T PF08553_consen  506 LYKMDLERGKVVEEWK-VHDDIPVVDIAPDSKFAQLTNE-QTFLGLSDNSLFRIDPRLSGNK-LVDSQ-------SKQYS  575 (794)
T ss_pred             eEEEecCCCcEEEEee-cCCCcceeEecccccccccCCC-ceEEEECCCceEEeccCCCCCc-eeecc-------ccccc
Confidence            4567999999999999 66543 66554321     122 3456667788999999853211 01100       00001


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeee
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL  155 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (250)
                      ......|++-+       ...+||+|+.+|.||+||-- +..                                      
T Consensus       576 ~~~~Fs~~aTt-------~~G~iavgs~~G~IRLyd~~-g~~--------------------------------------  609 (794)
T PF08553_consen  576 SKNNFSCFATT-------EDGYIAVGSNKGDIRLYDRL-GKR--------------------------------------  609 (794)
T ss_pred             cCCCceEEEec-------CCceEEEEeCCCcEEeeccc-chh--------------------------------------
Confidence            23456677766       46789999999999999832 210                                      


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecC
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  198 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~  198 (250)
                       ....+++-..+|..|..+   .+|+++++.+ +..+.+++..
T Consensus       610 -AKT~lp~lG~pI~~iDvt---~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  610 -AKTALPGLGDPIIGIDVT---ADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             -hhhcCCCCCCCeeEEEec---CCCcEEEEee-cceEEEEEEe
Confidence             112455667889999988   8898887776 4577777753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.96  E-value=2e-05  Score=54.78  Aligned_cols=105  Identities=17%  Similarity=0.118  Sum_probs=65.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEe
Q 025649           94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF  173 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  173 (250)
                      -+..+++|+.+|.|.+|.....-.                                       ....+..-...|.++.-
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~---------------------------------------~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGA---------------------------------------HSDRVCSGEESIDLGIP  109 (238)
T ss_pred             cCceEEeecccceEEEecCCccch---------------------------------------HHHhhhcccccceeccc
Confidence            467899999999999998872100                                       00011112223333321


Q ss_pred             ecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC-CceeEEEecCCCCCeEEEe--eCCceEEEEeC
Q 025649          174 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVC--DTSKVVKVYSI  249 (250)
Q Consensus       174 ~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~--~~d~~i~vw~~  249 (250)
                      .  ..++.+..+++.||.|+.|+.+..         +.+.....|+ .++..+.... .+++++.+  |.|..++.|++
T Consensus       110 ~--~~~~~~~c~~~~dg~ir~~n~~p~---------k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  110 N--GRDSSLGCVGAQDGRIRACNIKPN---------KVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             c--ccccceeEEeccCCceeeeccccC---------ceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcch
Confidence            1  134557888899999999999887         4444555666 4555554443 45567776  78888888876

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.96  E-value=6.7e-05  Score=61.85  Aligned_cols=71  Identities=11%  Similarity=0.076  Sum_probs=60.1

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  102 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  102 (250)
                      .+++++|+|..- .|+.|-.-|.+.+|...+.+ .++....            |+.+|..+.|++      +|..++++.
T Consensus        61 hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e-~htv~~t------------h~a~i~~l~wS~------~G~~l~t~d  120 (1416)
T KOG3617|consen   61 HATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTE-THTVVET------------HPAPIQGLDWSH------DGTVLMTLD  120 (1416)
T ss_pred             ehhhhccChHHH-HHhhccccceeEEEecCCce-eeeeccC------------CCCCceeEEecC------CCCeEEEcC
Confidence            467899999887 88999999999999986543 3444434            789999999999      999999999


Q ss_pred             CCCeEEEEeCC
Q 025649          103 GDGVVDVINIE  113 (250)
Q Consensus       103 ~d~~i~~~d~~  113 (250)
                      .-|.+.+|...
T Consensus       121 ~~g~v~lwr~d  131 (1416)
T KOG3617|consen  121 NPGSVHLWRYD  131 (1416)
T ss_pred             CCceeEEEEee
Confidence            99999999876

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.93  E-value=0.0035  Score=45.51  Aligned_cols=201  Identities=12%  Similarity=-0.007  Sum_probs=108.6

Q ss_pred             eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCC
Q 025649           11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA   88 (250)
Q Consensus        11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   88 (250)
                      +.+.++.+....--..+.|..++. ++-+.+.-|  .|+.+|+.+++......++            ..-.-..++..  
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~------------~~~FgEGit~~--   98 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLP------------PRYFGEGITIL--   98 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-T------------TT--EEEEEEE--
T ss_pred             EEEEECCCCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECC------------ccccceeEEEE--
Confidence            455666622234456888877787 777777666  7999999999887777655            12223344444  


Q ss_pred             cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE-Eeeeeeec--cCeeeeeeccccC--
Q 025649           89 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA-EMEILDQS--GGKRLHLDYSVGG--  163 (250)
Q Consensus        89 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~--  163 (250)
                           ++++..-.=.++...+||..+.+.+..+...  ..=..++  .+++.+. +.|+....  +...++....+..  
T Consensus        99 -----~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~--~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~  169 (264)
T PF05096_consen   99 -----GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP--GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD  169 (264)
T ss_dssp             -----TTEEEEEESSSSEEEEEETTTTEEEEEEE-S--SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE
T ss_pred             -----CCEEEEEEecCCeEEEEccccceEEEEEecC--CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE
Confidence                 3455555567889999999987777666544  2223333  3343333 33322221  1222222222221  


Q ss_pred             ---ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee------eccCCceeEEEecCCCCCe
Q 025649          164 ---HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN------INLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       164 ---h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~  234 (250)
                         .-..++.+.|-    +|...|=.-....|...|..++.......-..+....      ..-....+.+|+.|..+.+
T Consensus       170 ~g~pv~~LNELE~i----~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l  245 (264)
T PF05096_consen  170 NGRPVSNLNELEYI----NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRL  245 (264)
T ss_dssp             TTEE---EEEEEEE----TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEE
T ss_pred             CCEECCCcEeEEEE----cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEE
Confidence               12245667775    6777776666778888888888654321111111110      1113457899999977777


Q ss_pred             EEEee
Q 025649          235 LVVCD  239 (250)
Q Consensus       235 l~s~~  239 (250)
                      ++||=
T Consensus       246 ~vTGK  250 (264)
T PF05096_consen  246 FVTGK  250 (264)
T ss_dssp             EEEET
T ss_pred             EEEeC
Confidence            77774

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=0.003  Score=52.47  Aligned_cols=167  Identities=14%  Similarity=0.096  Sum_probs=100.2

Q ss_pred             eeeccCCCCC-eeeEEEcCCCCeEEEEecCCC-----eEEEEEccCCC------CccceecCCCCCCCCCCcccCCCcee
Q 025649           14 KSLRAGHSSI-CSSVQFIPWKPWEVISGGLDS-----KLVMWDFSKGR------PNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus        14 ~~l~~~h~~~-v~~l~~~~~~~~~l~s~s~dg-----~v~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      ..++ ++... |..+.. -+++.+|++.+.|+     .|++||++.-+      ++.....-.      ......+.++.
T Consensus        58 ~~fq-a~~~siv~~L~~-~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~------~~np~~~~p~s  129 (933)
T KOG2114|consen   58 RGFQ-AYEQSIVQFLYI-LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFT------IKNPTNPSPAS  129 (933)
T ss_pred             ehhe-ecchhhhhHhhc-ccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeec------cCCCCCCCcce
Confidence            5566 66665 555544 44433788877665     48999986431      221111000      00011356778


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCC--c-eeEeeccCCCCCCccceeecccceeE--E-E---eeeeeeccC
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIES--E-LNISRSKSTTKPLKGSQSTSKVNIRD--A-E---MEILDQSGG  152 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~---~~~~~~~~~  152 (250)
                      +++++.      +-+.+|+|-.||.|.++.-+-  . -.........+.+|+.+.+..+++..  + |   +...... .
T Consensus       130 ~l~Vs~------~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-g  202 (933)
T KOG2114|consen  130 SLAVSE------DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-G  202 (933)
T ss_pred             EEEEEc------cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-C
Confidence            888887      788999999999999985432  1 12233444456889999999888772  2 1   1122222 2


Q ss_pred             eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649          153 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  200 (250)
Q Consensus       153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~  200 (250)
                      +. .....+..|.....|.++++   ....+++++ +..+.+||....
T Consensus       203 r~-p~~~~ld~~G~~lnCss~~~---~t~qfIca~-~e~l~fY~sd~~  245 (933)
T KOG2114|consen  203 RT-PSLKVLDNNGISLNCSSFSD---GTYQFICAG-SEFLYFYDSDGR  245 (933)
T ss_pred             CC-cceeeeccCCccceeeecCC---CCccEEEec-CceEEEEcCCCc
Confidence            22 23445777888999999983   333344443 357999998865

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.88  E-value=0.0074  Score=47.67  Aligned_cols=47  Identities=15%  Similarity=0.091  Sum_probs=36.8

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS   52 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~   52 (250)
                      |+||+. .|+++.++. --.+.|.++.|+.+..  |+....||.++++|+.
T Consensus        63 I~iys~-sG~ll~~i~-w~~~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   63 IQIYSS-SGKLLSSIP-WDSGRIVGMGWTDDEE--LVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEECC-CCCEeEEEE-ECCCCEEEEEECCCCe--EEEEEcCCEEEEEeCC
Confidence            677775 577777766 3338999999998664  7777899999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.88  E-value=0.0044  Score=44.98  Aligned_cols=135  Identities=17%  Similarity=0.067  Sum_probs=75.4

Q ss_pred             CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec
Q 025649           42 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS  121 (250)
Q Consensus        42 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  121 (250)
                      .+|+|..||.++|+.+.....+.           ......+..+ +      ++..+++++.++.|..||..+|+.....
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~-----------~~~~~~~~~~-~------~~~~v~~~~~~~~l~~~d~~tG~~~W~~   62 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGP-----------GIGGPVATAV-P------DGGRVYVASGDGNLYALDAKTGKVLWRF   62 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSS-----------SCSSEEETEE-E------ETTEEEEEETTSEEEEEETTTSEEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCC-----------CCCCccceEE-E------eCCEEEEEcCCCEEEEEECCCCCEEEEe
Confidence            36899999999999988887531           0111111112 1      5677888889999999999999988776


Q ss_pred             cCCCCCCccceeecccceeEEEe-----eeeeeccCeeeeeeccc-cCc---cccEEEEEeecCCCCCcEEEEeeCCCeE
Q 025649          122 KSTTKPLKGSQSTSKVNIRDAEM-----EILDQSGGKRLHLDYSV-GGH---TAAASCVAFSMFGERGKYLISGGNDKLV  192 (250)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~h---~~~v~~~~~~p~~~~~~~l~s~~~d~~i  192 (250)
                      ...  ..+.......++..++..     ...+...++   .+.+. ...   ..........   ..+..++.+..++.|
T Consensus        63 ~~~--~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~---~~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l  134 (238)
T PF13360_consen   63 DLP--GPISGAPVVDGGRVYVGTSDGSLYALDAKTGK---VLWSIYLTSSPPAGVRSSSSPA---VDGDRLYVGTSSGKL  134 (238)
T ss_dssp             ECS--SCGGSGEEEETTEEEEEETTSEEEEEETTTSC---EEEEEEE-SSCTCSTB--SEEE---EETTEEEEEETCSEE
T ss_pred             ecc--ccccceeeecccccccccceeeeEecccCCcc---eeeeeccccccccccccccCce---EecCEEEEEeccCcE
Confidence            653  222221222233333211     122222222   22221 111   0111222222   236778888889999


Q ss_pred             EEEecCCCcc
Q 025649          193 KVWDCSRFQG  202 (250)
Q Consensus       193 ~iwd~~~~~~  202 (250)
                      ..+|.++++.
T Consensus       135 ~~~d~~tG~~  144 (238)
T PF13360_consen  135 VALDPKTGKL  144 (238)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEecCCCcE
Confidence            9999999854

...

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.87  E-value=0.0023  Score=45.83  Aligned_cols=113  Identities=14%  Similarity=0.061  Sum_probs=79.9

Q ss_pred             EEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCe
Q 025649           27 VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV  106 (250)
Q Consensus        27 l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~  106 (250)
                      +...++.+.+++.||..+.+.--|..+|..+..-..+              ..+.+-++-       -|++++.|+..|.
T Consensus        16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg--------------~RiE~sa~v-------vgdfVV~GCy~g~   74 (354)
T KOG4649|consen   16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG--------------VRIECSAIV-------VGDFVVLGCYSGG   74 (354)
T ss_pred             EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhC--------------ceeeeeeEE-------ECCEEEEEEccCc
Confidence            3345566658999999999999999999887766544              344444433       3778999999999


Q ss_pred             EEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEe
Q 025649          107 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG  186 (250)
Q Consensus       107 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~  186 (250)
                      +++.+..+|.....+...                                  .+.+     + .....   +++..+..|
T Consensus        75 lYfl~~~tGs~~w~f~~~----------------------------------~~vk-----~-~a~~d---~~~glIycg  111 (354)
T KOG4649|consen   75 LYFLCVKTGSQIWNFVIL----------------------------------ETVK-----V-RAQCD---FDGGLIYCG  111 (354)
T ss_pred             EEEEEecchhheeeeeeh----------------------------------hhhc-----c-ceEEc---CCCceEEEe
Confidence            999999988644332211                                  0111     1 11234   678899999


Q ss_pred             eCCCeEEEEecCCCcce
Q 025649          187 GNDKLVKVWDCSRFQGV  203 (250)
Q Consensus       187 ~~d~~i~iwd~~~~~~~  203 (250)
                      +.|+..+.-|.++..++
T Consensus       112 shd~~~yalD~~~~~cV  128 (354)
T KOG4649|consen  112 SHDGNFYALDPKTYGCV  128 (354)
T ss_pred             cCCCcEEEecccccceE
Confidence            99999999999987554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.87  E-value=0.0056  Score=48.26  Aligned_cols=100  Identities=14%  Similarity=0.028  Sum_probs=60.5

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      +.-+|.++|+.+.+.+ ............ + . .++.++.++.|..+|.++|+.+.......+            ....
T Consensus       132 l~ald~~tG~~~W~~~-~~~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~------------~~~~  195 (394)
T PRK11138        132 VYALNAEDGEVAWQTK-VAGEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVP------------SLTL  195 (394)
T ss_pred             EEEEECCCCCCccccc-CCCceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCC------------cccc
Confidence            4567888888887776 322111111111 3 3 577788899999999999998888764310            0000


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS  121 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  121 (250)
                      ...-+|..    .+..++.+..+|.+..+|..+++.....
T Consensus       196 ~~~~sP~v----~~~~v~~~~~~g~v~a~d~~~G~~~W~~  231 (394)
T PRK11138        196 RGESAPAT----AFGGAIVGGDNGRVSAVLMEQGQLIWQQ  231 (394)
T ss_pred             cCCCCCEE----ECCEEEEEcCCCEEEEEEccCChhhhee
Confidence            00112211    2335667778899999999998766543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.83  E-value=0.00031  Score=56.71  Aligned_cols=110  Identities=14%  Similarity=0.056  Sum_probs=78.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEe
Q 025649           94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF  173 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  173 (250)
                      .+++++.|+.-|.+++|+-..++...                                       .+..+..+.+.....
T Consensus        44 t~~~l~~GsS~G~lyl~~R~~~~~~~---------------------------------------~~~~~~~~~~~~~~v   84 (726)
T KOG3621|consen   44 TEEYLAMGSSAGSVYLYNRHTGEMRK---------------------------------------LKNEGATGITCVRSV   84 (726)
T ss_pred             CCceEEEecccceEEEEecCchhhhc---------------------------------------ccccCccceEEEEEe
Confidence            68999999999999999987655322                                       122223344555666


Q ss_pred             ecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          174 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       174 ~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +   ++..++|.|+..|.|.++-++........   ........|...|++++|++ ++..+++|...|+|.+-.+
T Consensus        85 s---~~e~lvAagt~~g~V~v~ql~~~~p~~~~---~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L  153 (726)
T KOG3621|consen   85 S---SVEYLVAAGTASGRVSVFQLNKELPRDLD---YVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTEL  153 (726)
T ss_pred             c---chhHhhhhhcCCceEEeehhhccCCCcce---eeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEe
Confidence            7   67788899999999999988874322100   01111234788999999997 9999999999999876543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.82  E-value=3.8e-05  Score=61.14  Aligned_cols=140  Identities=14%  Similarity=0.124  Sum_probs=87.0

Q ss_pred             cEEEEcccc--e--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccC
Q 025649            2 WQIIDIRQH--C--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         2 i~iwd~~~~--~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      +.|||+.++  .  .-..|..+-.....+++|..+.+ ++.+|.....+.++|++. ......+.               
T Consensus       131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~svn---------------  194 (783)
T KOG1008|consen  131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSVN---------------  194 (783)
T ss_pred             ccceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhhh---------------
Confidence            679999876  2  22233312344566889997777 889999999999999983 23333332               


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeC-CCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeee
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI-ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL  155 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (250)
                      ...+..+.+.|     ..++++++-. ||.|.+||. ++-+.+.....                                
T Consensus       195 Tk~vqG~tVdp-----~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~--------------------------------  236 (783)
T KOG1008|consen  195 TKYVQGITVDP-----FSPNYFCSNS-DGDIAIWDTYRNIENPLQIIL--------------------------------  236 (783)
T ss_pred             hhhcccceecC-----CCCCceeccc-cCceeeccchhhhccHHHHHh--------------------------------
Confidence            34667777877     4677887765 999999994 32111100000                                


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCC
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRF  200 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~  200 (250)
                         +.-......+..++|+|+. .| .+++.+ ..++|+++|+..-
T Consensus       237 ---~~~N~~~~~l~~~aycPtr-tg-lla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  237 ---RNENKKPKQLFALAYCPTR-TG-LLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             ---hCCCCcccceeeEEeccCC-cc-hhhhhccCcceEEEeccccc
Confidence               0001112358899999754 34 444444 4579999998753

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.0014  Score=50.39  Aligned_cols=120  Identities=14%  Similarity=0.029  Sum_probs=81.2

Q ss_pred             EecCCCeEEEEEccCCC-CccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee
Q 025649           39 SGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  117 (250)
Q Consensus        39 s~s~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~  117 (250)
                      +.-.+|.+.++|-...- ....+. +           .|..+|..+.++|      .+..+++....|.|.-|..+... 
T Consensus       117 s~~~sg~i~VvD~~~d~~q~~~fk-k-----------lH~sPV~~i~y~q------a~Ds~vSiD~~gmVEyWs~e~~~-  177 (558)
T KOG0882|consen  117 SLFKSGKIFVVDGFGDFCQDGYFK-K-----------LHFSPVKKIRYNQ------AGDSAVSIDISGMVEYWSAEGPF-  177 (558)
T ss_pred             ecccCCCcEEECCcCCcCccceec-c-----------cccCceEEEEeec------cccceeeccccceeEeecCCCcc-
Confidence            33457889999976543 333333 2           2678899999998      88899999999999999987411 


Q ss_pred             EeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEec
Q 025649          118 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  197 (250)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~  197 (250)
                       +       .+-..+.|.+..                ..-+..+...+....++.|+   |+|..+.+-+.|..|++++.
T Consensus       178 -q-------fPr~~l~~~~K~----------------eTdLy~f~K~Kt~pts~Efs---p~g~qistl~~DrkVR~F~~  230 (558)
T KOG0882|consen  178 -Q-------FPRTNLNFELKH----------------ETDLYGFPKAKTEPTSFEFS---PDGAQISTLNPDRKVRGFVF  230 (558)
T ss_pred             -c-------Cccccccccccc----------------cchhhcccccccCccceEEc---cccCcccccCcccEEEEEEe
Confidence             0       000111111111                11123344455677899999   89999999999999999999


Q ss_pred             CCCccee
Q 025649          198 SRFQGVQ  204 (250)
Q Consensus       198 ~~~~~~~  204 (250)
                      ++++..+
T Consensus       231 KtGklvq  237 (558)
T KOG0882|consen  231 KTGKLVQ  237 (558)
T ss_pred             ccchhhh
Confidence            9987554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.77  E-value=0.00014  Score=37.71  Aligned_cols=35  Identities=14%  Similarity=0.200  Sum_probs=30.8

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN   57 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~   57 (250)
                      ...|.+++|+|..+ +||.++.+|.|.++.+ +++.+
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcCc
Confidence            45799999999999 9999999999999999 56543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.76  E-value=0.0077  Score=44.11  Aligned_cols=171  Identities=11%  Similarity=0.083  Sum_probs=98.0

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      |-+..|.++.|+|+.+ .|++......-.++=..+|+.++++....            -....++.+..      +++++
T Consensus        83 g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g------------~~DpE~Ieyig------~n~fv  143 (316)
T COG3204          83 GETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTG------------FSDPETIEYIG------GNQFV  143 (316)
T ss_pred             cccccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccc------------cCChhHeEEec------CCEEE
Confidence            5556799999999999 67777777777777777899998887541            12233455554      67777


Q ss_pred             EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCC
Q 025649           99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE  178 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  178 (250)
                      ++--.++.+.++.+..+.........                              .-.+.........-..++|.   |
T Consensus       144 i~dER~~~l~~~~vd~~t~~~~~~~~------------------------------~i~L~~~~k~N~GfEGlA~d---~  190 (316)
T COG3204         144 IVDERDRALYLFTVDADTTVISAKVQ------------------------------KIPLGTTNKKNKGFEGLAWD---P  190 (316)
T ss_pred             EEehhcceEEEEEEcCCccEEeccce------------------------------EEeccccCCCCcCceeeecC---C
Confidence            77778888888877754322211110                              00111222224455677887   6


Q ss_pred             CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-------CCceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649          179 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-------NKKVNWLCTTPTESENLVVCDTSKVVKVY  247 (250)
Q Consensus       179 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~d~~i~vw  247 (250)
                      ..+.|..+-+-.-+.||.........      .......+       -..|.++.+.+..+.+++-+..++.+.-.
T Consensus       191 ~~~~l~~aKEr~P~~I~~~~~~~~~l------~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Ev  260 (316)
T COG3204         191 VDHRLFVAKERNPIGIFEVTQSPSSL------SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEV  260 (316)
T ss_pred             CCceEEEEEccCCcEEEEEecCCccc------ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEE
Confidence            66666666666666666655432110      00001111       12355566666556556656655555433

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.76  E-value=0.0029  Score=39.27  Aligned_cols=106  Identities=18%  Similarity=0.139  Sum_probs=67.1

Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeec
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY  159 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (250)
                      |++|++....-  ...+.|++|+.|..||+|+-..                                          .+.
T Consensus         2 V~al~~~d~d~--dg~~eLlvGs~D~~IRvf~~~e------------------------------------------~~~   37 (111)
T PF14783_consen    2 VTALCLFDFDG--DGENELLVGSDDFEIRVFKGDE------------------------------------------IVA   37 (111)
T ss_pred             eeEEEEEecCC--CCcceEEEecCCcEEEEEeCCc------------------------------------------EEE
Confidence            45555554211  1236899999999999998763                                          122


Q ss_pred             cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC---CeEE
Q 025649          160 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES---ENLV  236 (250)
Q Consensus       160 ~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~  236 (250)
                      ++.. ...|+++.-.   . +..++.+..+|+|-+|+-..          .+.+.-  -...+.++++...++   .-|+
T Consensus        38 Ei~e-~~~v~~L~~~---~-~~~F~Y~l~NGTVGvY~~~~----------RlWRiK--SK~~~~~~~~~D~~gdG~~eLI  100 (111)
T PF14783_consen   38 EITE-TDKVTSLCSL---G-GGRFAYALANGTVGVYDRSQ----------RLWRIK--SKNQVTSMAFYDINGDGVPELI  100 (111)
T ss_pred             EEec-ccceEEEEEc---C-CCEEEEEecCCEEEEEeCcc----------eeeeec--cCCCeEEEEEEcCCCCCceEEE
Confidence            3332 3457777766   3 36788888999999998755          232221  223477777765343   2488


Q ss_pred             EeeCCceEEE
Q 025649          237 VCDTSKVVKV  246 (250)
Q Consensus       237 s~~~d~~i~v  246 (250)
                      +|-.+|.|-+
T Consensus       101 ~GwsnGkve~  110 (111)
T PF14783_consen  101 VGWSNGKVEV  110 (111)
T ss_pred             EEecCCeEEe
Confidence            8888998753

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.71  E-value=0.0021  Score=50.24  Aligned_cols=160  Identities=11%  Similarity=-0.008  Sum_probs=80.8

Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe-eccC-CCCCCccceeecccceeEEEee-eeeeccCeee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKS-TTKPLKGSQSTSKVNIRDAEME-ILDQSGGKRL  155 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  155 (250)
                      .|+.+.+.+      +...|++|...|.|-+|.....+... .... .....-..+........+..+. ..+....+.+
T Consensus         3 ~v~~vs~a~------~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf   76 (395)
T PF08596_consen    3 SVTHVSFAP------ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGF   76 (395)
T ss_dssp             -EEEEEEET------TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEE
T ss_pred             eEEEEEecC------CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCccccccc
Confidence            477888887      88899999999999999876543222 1000 0000001111111111111111 1111123345


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC----CC
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP----TE  231 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~  231 (250)
                      .+..-+....++|++++.|    +=-+++.|..+|.+.|.|+|...-.....-.+ ..........++++.|.-    .|
T Consensus        77 ~P~~l~~~~~g~vtal~~S----~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D  151 (395)
T PF08596_consen   77 LPLTLLDAKQGPVTALKNS----DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGD  151 (395)
T ss_dssp             EEEEEE---S-SEEEEEE-----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTS
T ss_pred             CchhheeccCCcEeEEecC----CCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCC
Confidence            5666666678999999987    44599999999999999998864332111001 000011233466776652    23


Q ss_pred             C---CeEEEeeCCceEEEEeC
Q 025649          232 S---ENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       232 ~---~~l~s~~~d~~i~vw~~  249 (250)
                      +   -.+++|...|.+.+|.+
T Consensus       152 ~ySSi~L~vGTn~G~v~~fkI  172 (395)
T PF08596_consen  152 GYSSICLLVGTNSGNVLTFKI  172 (395)
T ss_dssp             SSEEEEEEEEETTSEEEEEEE
T ss_pred             cccceEEEEEeCCCCEEEEEE
Confidence            3   24778888999999875

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.69  E-value=0.00017  Score=59.99  Aligned_cols=114  Identities=12%  Similarity=0.075  Sum_probs=82.0

Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec-----
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS-----  150 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  150 (250)
                      +....++++|+.      +.++|++|+..|.|++|++.+|........+ ...++.+.-+.+|..+++...+..-     
T Consensus      1100 ~~~~fTc~afs~------~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1100 ETALFTCIAFSG------GTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             cccceeeEEeec------CCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCcceeeeeccccCchHHHh
Confidence            346678999997      8899999999999999999999877655444 4788889999999998876555442     


Q ss_pred             c-CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649          151 G-GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV  203 (250)
Q Consensus       151 ~-~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~  203 (250)
                      . ...+...+.|..    -.++.|+   ...++-+.|..-....+||++++...
T Consensus      1173 ~~~s~~~~~Hsf~e----d~~vkFs---n~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFS---NSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred             ccccccCccccccc----cceeehh---hhHHHHHhcccccceEEEecccCcHH
Confidence            1 123333344433    3578888   54444455555567899999998544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.63  E-value=0.00076  Score=56.01  Aligned_cols=110  Identities=17%  Similarity=0.277  Sum_probs=79.0

Q ss_pred             eeeEEEcCCCCeEEEEecC----CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649           24 CSSVQFIPWKPWEVISGGL----DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV   99 (250)
Q Consensus        24 v~~l~~~~~~~~~l~s~s~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~   99 (250)
                      -+-.+|+|..+ +|+.++-    .|.|.||- ++|++.....              .|-.+.+++|+|      ..-.|+
T Consensus        18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--------------~P~hatSLCWHp------e~~vLa   75 (1416)
T KOG3617|consen   18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT--------------YPVHATSLCWHP------EEFVLA   75 (1416)
T ss_pred             ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc--------------cceehhhhccCh------HHHHHh
Confidence            34567999999 8887754    47888874 4566655544              235567899998      777888


Q ss_pred             EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649          100 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER  179 (250)
Q Consensus       100 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  179 (250)
                      .|=.-|.+.+|...+.+..                                        .....|..+|..+.||   ++
T Consensus        76 ~gwe~g~~~v~~~~~~e~h----------------------------------------tv~~th~a~i~~l~wS---~~  112 (1416)
T KOG3617|consen   76 QGWEMGVSDVQKTNTTETH----------------------------------------TVVETHPAPIQGLDWS---HD  112 (1416)
T ss_pred             hccccceeEEEecCCceee----------------------------------------eeccCCCCCceeEEec---CC
Confidence            8888899999988753311                                        1223577778888888   78


Q ss_pred             CcEEEEeeCCCeEEEEecC
Q 025649          180 GKYLISGGNDKLVKVWDCS  198 (250)
Q Consensus       180 ~~~l~s~~~d~~i~iwd~~  198 (250)
                      |..++++..-|.+.+|.+.
T Consensus       113 G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  113 GTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCeEEEcCCCceeEEEEee
Confidence            8888888878888888665

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.60  E-value=0.0058  Score=48.51  Aligned_cols=132  Identities=11%  Similarity=0.067  Sum_probs=69.2

Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD  158 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (250)
                      ....+.++|      +++.+++ +.||.-.+|.....+....      +......|.+.+++.+....      ......
T Consensus        34 ~p~~ls~np------ngr~v~V-~g~geY~iyt~~~~r~k~~------G~g~~~vw~~~n~yAv~~~~------~~I~I~   94 (443)
T PF04053_consen   34 YPQSLSHNP------NGRFVLV-CGDGEYEIYTALAWRNKAF------GSGLSFVWSSRNRYAVLESS------STIKIY   94 (443)
T ss_dssp             --SEEEE-T------TSSEEEE-EETTEEEEEETTTTEEEEE------EE-SEEEE-TSSEEEEE-TT------S-EEEE
T ss_pred             CCeeEEECC------CCCEEEE-EcCCEEEEEEccCCccccc------CceeEEEEecCccEEEEECC------CeEEEE
Confidence            457788888      8999888 5678888888554443332      33445777777765552111      111111


Q ss_pred             ccccCcc-------ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649          159 YSVGGHT-------AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE  231 (250)
Q Consensus       159 ~~~~~h~-------~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  231 (250)
                      +.++...       ..+..+  .   . |.+|+..+. +.|.+||..++         ..+......  +|..+.|++ +
T Consensus        95 kn~~~~~~k~i~~~~~~~~I--f---~-G~LL~~~~~-~~i~~yDw~~~---------~~i~~i~v~--~vk~V~Ws~-~  155 (443)
T PF04053_consen   95 KNFKNEVVKSIKLPFSVEKI--F---G-GNLLGVKSS-DFICFYDWETG---------KLIRRIDVS--AVKYVIWSD-D  155 (443)
T ss_dssp             ETTEE-TT-----SS-EEEE--E-----SSSEEEEET-TEEEEE-TTT-----------EEEEESS---E-EEEEE-T-T
T ss_pred             EcCccccceEEcCCcccceE--E---c-CcEEEEECC-CCEEEEEhhHc---------ceeeEEecC--CCcEEEEEC-C
Confidence            1221111       112222  2   2 677776664 48999999997         444444322  388999997 8


Q ss_pred             CCeEEEeeCCceEEEEeC
Q 025649          232 SENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       232 ~~~l~s~~~d~~i~vw~~  249 (250)
                      +++++..+.+ .+.+++.
T Consensus       156 g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  156 GELVALVTKD-SIYILKY  172 (443)
T ss_dssp             SSEEEEE-S--SEEEEEE
T ss_pred             CCEEEEEeCC-eEEEEEe
Confidence            8888888755 4666653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.59  E-value=0.024  Score=44.90  Aligned_cols=51  Identities=20%  Similarity=0.352  Sum_probs=38.1

Q ss_pred             eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce
Q 025649           45 KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  116 (250)
Q Consensus        45 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  116 (250)
                      .|++|+.. |+.+..+...             .+.+.++.|+.       ...|++...||.+++||+....
T Consensus        62 ~I~iys~s-G~ll~~i~w~-------------~~~iv~~~wt~-------~e~LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWD-------------SGRIVGMGWTD-------DEELVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             EEEEECCC-CCEeEEEEEC-------------CCCEEEEEECC-------CCeEEEEEcCCEEEEEeCCCce
Confidence            47888774 6666666644             37899999985       5566677799999999997544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.57  E-value=0.0046  Score=47.24  Aligned_cols=179  Identities=12%  Similarity=0.030  Sum_probs=98.6

Q ss_pred             CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC-CCCCEEEEEeC----------CCeEEEEeC
Q 025649           44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD-KTNKICVVAKG----------DGVVDVINI  112 (250)
Q Consensus        44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~l~~~~~----------d~~i~~~d~  112 (250)
                      ..|++.|..+.+.+..+.+.            ....+.++......-.. ....++++|..          .|.|.++++
T Consensus         2 s~i~l~d~~~~~~~~~~~l~------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i   69 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELE------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEI   69 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEE------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEE
T ss_pred             cEEEEEeCCCCeEEEEEECC------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEE
Confidence            36888898888877777765            34455555433210000 02567777743          289999999


Q ss_pred             CCc-----eeEeeccCCCCCCccceeecccceeEEEee----eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEE
Q 025649          113 ESE-----LNISRSKSTTKPLKGSQSTSKVNIRDAEME----ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL  183 (250)
Q Consensus       113 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l  183 (250)
                      ...     +............+.++.-- ++.+++..+    .++............+..+ ..+.++...     ++++
T Consensus        70 ~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~~-----~~~I  142 (321)
T PF03178_consen   70 SESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSP-FYITSLSVF-----KNYI  142 (321)
T ss_dssp             CSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BS-SSEEEEEEE-----TTEE
T ss_pred             EcccccceEEEEEEEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhheecce-EEEEEEecc-----ccEE
Confidence            984     22222222334667776655 445554322    1222222212222333322 256666654     4689


Q ss_pred             EEeeCCCeEEEEecCCCcceecccccceeeee-eccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          184 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-INLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       184 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +.|..-..+.++..+....       .+.... ......++++.+.+ +++.++.++.+|.+.++.+
T Consensus       143 ~vgD~~~sv~~~~~~~~~~-------~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~  201 (321)
T PF03178_consen  143 LVGDAMKSVSLLRYDEENN-------KLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRY  201 (321)
T ss_dssp             EEEESSSSEEEEEEETTTE--------EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE
T ss_pred             EEEEcccCEEEEEEEccCC-------EEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEE
Confidence            9998888888875554211       121111 12244578888875 4468999999999998864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.56  E-value=0.0041  Score=49.11  Aligned_cols=120  Identities=11%  Similarity=-0.039  Sum_probs=71.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEE--EEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM--WDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +.++|+++++....+.  ..+.-..-+|+|||+.++++...||...|  .|+..+.. ..+...             ...
T Consensus       220 i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~-------------~gi  283 (425)
T COG0823         220 IYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNG-------------FGI  283 (425)
T ss_pred             EEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccC-------------Ccc
Confidence            5677888776655554  33344567899999977777788877554  56655552 223311             112


Q ss_pred             eeEEecCCCcccCCCCCEEEEEe-CCC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee
Q 025649           80 VHAIAIPDADMLDKTNKICVVAK-GDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME  145 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~-~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (250)
                      -..-.|+|      +|+.++-.+ ..|  .|.++|++.+.........  ..-....++|||++++...
T Consensus       284 ~~~Ps~sp------dG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~--~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         284 NTSPSWSP------DGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG--GGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             ccCccCCC------CCCEEEEEeCCCCCcceEEECCCCCceeEeeccC--CCCcCccCCCCCCEEEEEe
Confidence            22456777      888876664 444  4566666665442222111  2222788999999998544

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.46  E-value=0.022  Score=41.50  Aligned_cols=162  Identities=10%  Similarity=0.029  Sum_probs=87.3

Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeee--
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQ--  149 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--  149 (250)
                      ..+.+++|.|     .++.++++....+.|..++.+ |+.+..+..........+++..++.++++.      -....  
T Consensus        22 ~e~SGLTy~p-----d~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   22 DELSGLTYNP-----DTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             S-EEEEEEET-----TTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred             CCccccEEcC-----CCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence            4589999998     235677888888999888975 666766655545677788888888777642      11111  


Q ss_pred             --ccC--eeeeee--ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC---CcceecccccceeeeeeccCC
Q 025649          150 --SGG--KRLHLD--YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR---FQGVQTSINNDLLIKNINLNK  220 (250)
Q Consensus       150 --~~~--~~~~~~--~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~  220 (250)
                        ...  ...+.+  .....+...+..++|+   +.++.|+.+-+..-..+|.++.   ............ ........
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D---~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  171 (248)
T PF06977_consen   96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYD---PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDL-DDDKLFVR  171 (248)
T ss_dssp             --TT--EEEEEEEE---S---SS--EEEEEE---TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHH-H-HT--SS
T ss_pred             cccccchhhceEEecccccCCCcceEEEEEc---CCCCEEEEEeCCCChhhEEEccccCccceeecccccc-ccccceec
Confidence              011  111111  1112345668999999   6666666777776677777664   111100000000 00112233


Q ss_pred             ceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          221 KVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       221 ~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .+.++.++|..+.+++.+..+..|..+|.
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d~  200 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELDR  200 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEECC
Confidence            57788899988888888888888877764

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.45  E-value=0.012  Score=45.62  Aligned_cols=169  Identities=9%  Similarity=0.021  Sum_probs=88.6

Q ss_pred             cCCCCeEEEEe---------cCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649           30 IPWKPWEVISG---------GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  100 (250)
Q Consensus        30 ~~~~~~~l~s~---------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  100 (250)
                      |||++ +++..         +..+.+.++|+++++.......              ...+....|+|      +|+.++.
T Consensus         1 S~d~~-~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--------------~~~~~~~~~sP------~g~~~~~   59 (353)
T PF00930_consen    1 SPDGK-FVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--------------PPKLQDAKWSP------DGKYIAF   59 (353)
T ss_dssp             -TTSS-EEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--------------ETTBSEEEE-S------SSTEEEE
T ss_pred             CCCCC-eEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--------------ccccccceeec------CCCeeEE
Confidence            57777 34332         2346788999988654433321              25678899999      9999988


Q ss_pred             EeCCCeEEEEeCCCceeEeeccCCC----------------CCCccceeecccceeEEEeeeeeeccCeeeeeeccccCc
Q 025649          101 AKGDGVVDVINIESELNISRSKSTT----------------KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH  164 (250)
Q Consensus       101 ~~~d~~i~~~d~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  164 (250)
                      .. ++.|.++++.++.....-....                -..-..+.||||+++++ .-..|....+..........+
T Consensus        60 v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la-~~~~d~~~v~~~~~~~~~~~~  137 (353)
T PF00930_consen   60 VR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLA-FLRFDEREVPEYPLPDYSPPD  137 (353)
T ss_dssp             EE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEE-EEEEE-TTS-EEEEEEESSST
T ss_pred             Ee-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEE-EEEECCcCCceEEeeccCCcc
Confidence            85 5789999988765443222110                12345678999999999 444454544444433333332


Q ss_pred             c--ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC
Q 025649          165 T--AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE  233 (250)
Q Consensus       165 ~--~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  233 (250)
                      .  ..+..+.+-   .-|.--.    .-.+.|+|+.+++....    ........-..-+..+.|.+ +++
T Consensus       138 ~~yp~~~~~~YP---k~G~~np----~v~l~v~~~~~~~~~~~----~~~~~~~~~~~yl~~v~W~~-d~~  196 (353)
T PF00930_consen  138 SQYPEVESIRYP---KAGDPNP----RVSLFVVDLASGKTTEL----DPPNSLNPQDYYLTRVGWSP-DGK  196 (353)
T ss_dssp             ESS-EEEEEE-----BTTS-------EEEEEEEESSSTCCCEE-------HHHHTSSEEEEEEEEEE-TTE
T ss_pred             ccCCcccccccC---CCCCcCC----ceEEEEEECCCCcEEEe----eeccccCCCccCcccceecC-CCc
Confidence            2  245566652   2222111    11466788887643210    00000012233467778876 555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.0058  Score=48.27  Aligned_cols=150  Identities=15%  Similarity=0.150  Sum_probs=89.4

Q ss_pred             EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc-CCCCCEEEEEeCCCeEEEEeCCC
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML-DKTNKICVVAKGDGVVDVINIES  114 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~l~~~~~d~~i~~~d~~~  114 (250)
                      +|.++.....|.--|++.|+.+..++++              +.|.-+.+.|-.-+ ......-+.|-.|+.|.-||.+-
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~--------------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv  413 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFE--------------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV  413 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeecc--------------CCcceeeccCCcchhcccccccEEeecCCceEEecccc
Confidence            4556666677888899999999999866              33666666661000 00111224455678888888872


Q ss_pred             ceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEE
Q 025649          115 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV  194 (250)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~i  194 (250)
                      .-.-                     .|+         ..   .-+.+.. ...-.|.+-.   .+ -+++.||.+|.|++
T Consensus       414 ~~~~---------------------kl~---------~~---q~kqy~~-k~nFsc~aTT---~s-G~IvvgS~~GdIRL  455 (644)
T KOG2395|consen  414 QGKN---------------------KLA---------VV---QSKQYST-KNNFSCFATT---ES-GYIVVGSLKGDIRL  455 (644)
T ss_pred             cCcc---------------------eee---------ee---ecccccc-ccccceeeec---CC-ceEEEeecCCcEEe
Confidence            1100                     000         00   0012222 2234555544   33 48999999999999


Q ss_pred             EecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          195 WDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       195 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      ||- .+.        .....+.+...+|..+.... +|++|+..+ +..+.+-+
T Consensus       456 Ydr-i~~--------~AKTAlPgLG~~I~hVdvta-dGKwil~Tc-~tyLlLi~  498 (644)
T KOG2395|consen  456 YDR-IGR--------RAKTALPGLGDAIKHVDVTA-DGKWILATC-KTYLLLID  498 (644)
T ss_pred             ehh-hhh--------hhhhcccccCCceeeEEeec-cCcEEEEec-ccEEEEEE
Confidence            997 332        22335567888999998886 888776655 44455544

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.0012  Score=52.92  Aligned_cols=71  Identities=10%  Similarity=0.120  Sum_probs=59.2

Q ss_pred             ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee-EEEecCCCCCeEEEeeCCceE
Q 025649          166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN-WLCTTPTESENLVVCDTSKVV  244 (250)
Q Consensus       166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i  244 (250)
                      ..+.-+.|+   |.-.++|.+..+|.|.+..++.          +.+-.+.-|...+. +++|.| ||+.|+.|-.||+|
T Consensus        21 ~~i~~~ewn---P~~dLiA~~t~~gelli~R~n~----------qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I   86 (665)
T KOG4640|consen   21 INIKRIEWN---PKMDLIATRTEKGELLIHRLNW----------QRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTI   86 (665)
T ss_pred             cceEEEEEc---CccchhheeccCCcEEEEEecc----------ceeEeccCCCCccceeeeecC-CCCEEEEEecCCeE
Confidence            457788999   7889999999999999998885          44445555666776 999998 89999999999999


Q ss_pred             EEEeCC
Q 025649          245 KVYSIS  250 (250)
Q Consensus       245 ~vw~~~  250 (250)
                      ++-|++
T Consensus        87 ~L~Dve   92 (665)
T KOG4640|consen   87 RLHDVE   92 (665)
T ss_pred             EEEEcc
Confidence            999864

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.36  E-value=0.0017  Score=55.23  Aligned_cols=70  Identities=26%  Similarity=0.414  Sum_probs=53.2

Q ss_pred             cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE---EecCCCCCeEEEeeCC
Q 025649          165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL---CTTPTESENLVVCDTS  241 (250)
Q Consensus       165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~l~s~~~d  241 (250)
                      .++|++++|+   .+|.+++.|-.+|.|.+||+..+         ++++.+..|..+..++   .+.. ++..++++...
T Consensus       130 ~~~Vtsvafn---~dg~~l~~G~~~G~V~v~D~~~~---------k~l~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~  196 (1206)
T KOG2079|consen  130 QGPVTSVAFN---QDGSLLLAGLGDGHVTVWDMHRA---------KILKVITEHGAPVTGVIFVGRTS-QNSKLLTSDTG  196 (1206)
T ss_pred             CCcceeeEec---CCCceeccccCCCcEEEEEccCC---------cceeeeeecCCccceEEEEEEeC-CCcEEEEccCC
Confidence            5789999999   89999999999999999999997         5555666666554444   4443 55568888877


Q ss_pred             ceEEEEeC
Q 025649          242 KVVKVYSI  249 (250)
Q Consensus       242 ~~i~vw~~  249 (250)
                      |.  +|++
T Consensus       197 Gs--f~~l  202 (1206)
T KOG2079|consen  197 GS--FWKL  202 (1206)
T ss_pred             Cc--eEEE
Confidence            75  5653

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=0.048  Score=42.82  Aligned_cols=175  Identities=13%  Similarity=0.072  Sum_probs=110.5

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec--CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG--LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      |.+.|..+.+.......+.  .-..++++|+++.+.++-.  .++++.+.|..+++.......+             ..+
T Consensus        98 v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-------------~~P  162 (381)
T COG3391          98 VSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-------------NTP  162 (381)
T ss_pred             EEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-------------CCc
Confidence            5677777666666665233  5679999999984455545  3789999999988888776644             122


Q ss_pred             eeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCceeEe-ec--cCCCCCCccceeecccceeEEEeeeee--ec---
Q 025649           80 VHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNIS-RS--KSTTKPLKGSQSTSKVNIRDAEMEILD--QS---  150 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---  150 (250)
                       ..+++.|      +++.+.+.. .++.|.+.|........ ..  ..........+.++|+|..+......+  ..   
T Consensus       163 -~~~a~~p------~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~  235 (381)
T COG3391         163 -TGVAVDP------DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK  235 (381)
T ss_pred             -ceEEECC------CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence             7888998      888665554 78999999977655443 10  122235567789999998766322221  11   


Q ss_pred             -cCeeeeeecc-ccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCc
Q 025649          151 -GGKRLHLDYS-VGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQ  201 (250)
Q Consensus       151 -~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~  201 (250)
                       +......... ..........+.++   |+|.++.... ..+.+.+-|..+..
T Consensus       236 id~~~~~v~~~~~~~~~~~~~~v~~~---p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         236 IDTATGNVTATDLPVGSGAPRGVAVD---PAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             EeCCCceEEEeccccccCCCCceeEC---CCCCEEEEEecCCCeEEEEeCCCCc
Confidence             1111111111 11111134567788   8888887774 45889999988853

>PHA02713 hypothetical protein; Provisional

Probab=97.29  E-value=0.068  Score=44.24  Aligned_cols=26  Identities=8%  Similarity=0.226  Sum_probs=18.8

Q ss_pred             CCCEEEEEeCCC-----eEEEEeCCCceeEe
Q 025649           94 TNKICVVAKGDG-----VVDVINIESELNIS  119 (250)
Q Consensus        94 ~~~~l~~~~~d~-----~i~~~d~~~~~~~~  119 (250)
                      ++++.+.|+.++     .+..||..+++...
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~  381 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKM  381 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence            678888887654     47889998765443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=0.059  Score=42.33  Aligned_cols=189  Identities=12%  Similarity=0.067  Sum_probs=115.9

Q ss_pred             eeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC
Q 025649           24 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG  103 (250)
Q Consensus        24 v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~  103 (250)
                      -..+++++.+....++...++.|.+.|..+.+.......+              .....++++|      +++.+.++..
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--------------~~P~~~~~~~------~~~~vYV~n~  135 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--------------LGPVGLAVDP------DGKYVYVANA  135 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec--------------cCCceEEECC------CCCEEEEEec
Confidence            3467888888756677777789999998887777777655              2457788888      7777666644


Q ss_pred             ---CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeeeeeec-----cccCccccEEEE
Q 025649          104 ---DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLDY-----SVGGHTAAASCV  171 (250)
Q Consensus       104 ---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~~~h~~~v~~~  171 (250)
                         ++++.+.|..+++......... .+ ..++++|+|..+......+.    .+.......+     ..... .....+
T Consensus       136 ~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i  212 (381)
T COG3391         136 GNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGI  212 (381)
T ss_pred             ccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceE
Confidence               7999999999988877744432 22 88999999997764321111    1111111111     11111 223567


Q ss_pred             EeecCCCCCcEEEEeeC---CCeEEEEecCCCcceecccccceeeeeeccCC-ceeEEEecCCCCCeEEEee-CCceEEE
Q 025649          172 AFSMFGERGKYLISGGN---DKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESENLVVCD-TSKVVKV  246 (250)
Q Consensus       172 ~~~p~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~-~d~~i~v  246 (250)
                      .++   ++|.++.....   ++.+...|..++.         .......-.. ....+...| +|..+.+.. ..+.+.+
T Consensus       213 ~v~---~~g~~~yV~~~~~~~~~v~~id~~~~~---------v~~~~~~~~~~~~~~v~~~p-~g~~~yv~~~~~~~V~v  279 (381)
T COG3391         213 AVD---PDGNRVYVANDGSGSNNVLKIDTATGN---------VTATDLPVGSGAPRGVAVDP-AGKAAYVANSQGGTVSV  279 (381)
T ss_pred             EEC---CCCCEEEEEeccCCCceEEEEeCCCce---------EEEeccccccCCCCceeECC-CCCEEEEEecCCCeEEE
Confidence            788   78886655443   3689999988863         2222111111 344566776 676666653 3355555


Q ss_pred             Ee
Q 025649          247 YS  248 (250)
Q Consensus       247 w~  248 (250)
                      -|
T Consensus       280 id  281 (381)
T COG3391         280 ID  281 (381)
T ss_pred             Ee
Confidence            44

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.26  E-value=0.051  Score=43.34  Aligned_cols=132  Identities=14%  Similarity=-0.000  Sum_probs=65.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCe-eee------------eeccc
Q 025649           95 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK-RLH------------LDYSV  161 (250)
Q Consensus        95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~~~~~  161 (250)
                      |.+|...+. +.|.+||+.+++.+..+...   .+..+.|+++|.+++..+........ ..+            ....+
T Consensus       117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~  192 (443)
T PF04053_consen  117 GNLLGVKSS-DFICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELI  192 (443)
T ss_dssp             SSSEEEEET-TEEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred             CcEEEEECC-CCEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEE
Confidence            666766655 48999999999988888764   48899999999998843322222111 000            11111


Q ss_pred             cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC
Q 025649          162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS  241 (250)
Q Consensus       162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  241 (250)
                      ..-...|.+..|.   .+ -++.|.. . .|+.  +..+.         . ........+++-+.+.+ ..+.+.....|
T Consensus       193 ~E~~~~IkSg~W~---~d-~fiYtT~-~-~lkY--l~~Ge---------~-~~i~~ld~~~yllgy~~-~~~~ly~~Dr~  253 (443)
T PF04053_consen  193 HEISERIKSGCWV---ED-CFIYTTS-N-HLKY--LVNGE---------T-GIIAHLDKPLYLLGYLP-KENRLYLIDRD  253 (443)
T ss_dssp             EEE-S--SEEEEE---TT-EEEEE-T-T-EEEE--EETTE---------E-EEEEE-SS--EEEEEET-TTTEEEEE-TT
T ss_pred             EEecceeEEEEEE---cC-EEEEEcC-C-eEEE--EEcCC---------c-ceEEEcCCceEEEEEEc-cCCEEEEEECC
Confidence            1113467777776   43 4444443 2 6666  44432         1 12222244566666666 44578888888


Q ss_pred             ceEEEEeC
Q 025649          242 KVVKVYSI  249 (250)
Q Consensus       242 ~~i~vw~~  249 (250)
                      +.|..+.+
T Consensus       254 ~~v~~~~l  261 (443)
T PF04053_consen  254 GNVISYEL  261 (443)
T ss_dssp             --EEEEE-
T ss_pred             CCEEEEEE
Confidence            88887765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.26  E-value=0.035  Score=45.88  Aligned_cols=202  Identities=14%  Similarity=0.074  Sum_probs=97.7

Q ss_pred             cEEEEcccceee--eeeccCCCCCeeeEEEcCCCCeEEEEecCC------CeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649            2 WQIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGLD------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         2 i~iwd~~~~~~~--~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~   73 (250)
                      +..+|..+++..  ..+.  +...-.++++..+ . +.++|+.|      .++..||..+++-...-...          
T Consensus       303 ve~yd~~~~~w~~~a~m~--~~r~~~~~~~~~~-~-lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~----------  368 (571)
T KOG4441|consen  303 VECYDPKTNEWSSLAPMP--SPRCRVGVAVLNG-K-LYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN----------  368 (571)
T ss_pred             eEEecCCcCcEeecCCCC--cccccccEEEECC-E-EEEEccccCCCcccceEEEecCCCCceeccCCcc----------
Confidence            566777766432  3333  2223445555544 4 78889888      35778888776532211100          


Q ss_pred             ccCCCceeEEecCCCcccCCCCCEEEEEeCCC-----eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee
Q 025649           74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-----VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD  148 (250)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (250)
                        .+..-.+++..       +|.+.++|+.||     ++..||..+.+......... ..-..-...-+|...+ +|.++
T Consensus       369 --~~R~~~~v~~l-------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi-~GG~~  437 (571)
T KOG4441|consen  369 --TKRSDFGVAVL-------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYI-IGGGD  437 (571)
T ss_pred             --CccccceeEEE-------CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEE-EcCcC
Confidence              11111223322       688889999886     46778877655333222211 1111222233444444 55544


Q ss_pred             eccC--eeee----------eeccccCccccEEEEEeecCCCCCcEEEEeeCCC-----eEEEEecCCCcceecccccce
Q 025649          149 QSGG--KRLH----------LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK-----LVKVWDCSRFQGVQTSINNDL  211 (250)
Q Consensus       149 ~~~~--~~~~----------~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~  211 (250)
                      ....  ...+          .+..+..-... ..++.-    ++.+.+.|+.|+     +|..||..+.+..       .
T Consensus       438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~~----~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~-------~  505 (571)
T KOG4441|consen  438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAVL----NGKIYVVGGFDGTSALSSVERYDPETNQWT-------M  505 (571)
T ss_pred             CCccccceEEEEcCCCCceeecCCccccccc-ceEEEE----CCEEEEECCccCCCccceEEEEcCCCCcee-------E
Confidence            4431  1111          11111111111 123333    567888888776     3777888875432       1


Q ss_pred             eeeeeccCCceeEEEecCCCCCeEEEeeCCce
Q 025649          212 LIKNINLNKKVNWLCTTPTESENLVVCDTSKV  243 (250)
Q Consensus       212 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  243 (250)
                      + ........-..++.  .++...++|+.||.
T Consensus       506 v-~~m~~~rs~~g~~~--~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  506 V-APMTSPRSAVGVVV--LGGKLYAVGGFDGN  534 (571)
T ss_pred             c-ccCccccccccEEE--ECCEEEEEecccCc
Confidence            1 11111112222222  26677788887764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.21  E-value=0.071  Score=41.91  Aligned_cols=90  Identities=17%  Similarity=0.178  Sum_probs=55.3

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc------cee-------cCC-C----C----CCC--------CCC
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK------IVN-------FGL-P----E----NNG--------NAG   72 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~------~~~-------~~~-~----~----~~~--------~~~   72 (250)
                      .|+.+.|.++.. -|+.|...|.|.||.....+.-.      ...       ... +    +    ...        ...
T Consensus         3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            588999999977 79999999999999876543221      000       000 0    0    000        011


Q ss_pred             cccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEee
Q 025649           73 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  120 (250)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  120 (250)
                      +....+.|++++.+       +=.++++|+.+|.+.|.|++....+..
T Consensus        82 ~~~~~g~vtal~~S-------~iGFvaigy~~G~l~viD~RGPavI~~  122 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-------DIGFVAIGYESGSLVVIDLRGPAVIYN  122 (395)
T ss_dssp             E---S-SEEEEEE--------BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eeccCCcEeEEecC-------CCcEEEEEecCCcEEEEECCCCeEEee
Confidence            11234677888877       677999999999999999998776654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.17  E-value=0.074  Score=41.34  Aligned_cols=51  Identities=16%  Similarity=0.171  Sum_probs=36.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP   56 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~   56 (250)
                      +.|+|+++++......  ....+....|||+|+ .++-.. ++.|.+++..+++.
T Consensus        25 y~i~d~~~~~~~~l~~--~~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen   25 YYIYDIETGEITPLTP--PPPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             EEEEETTTTEEEESS---EETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEE
T ss_pred             EEEEecCCCceEECcC--CccccccceeecCCC-eeEEEe-cCceEEEECCCCCe
Confidence            4689999877654444  367889999999999 566554 57899999877643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.10  E-value=0.11  Score=42.29  Aligned_cols=111  Identities=17%  Similarity=0.091  Sum_probs=63.3

Q ss_pred             cEEEEcccceeeeeeccCCCCC-------------------e-eeEEEcCCCCeEEEEecCCC-----------------
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSI-------------------C-SSVQFIPWKPWEVISGGLDS-----------------   44 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~-------------------v-~~l~~~~~~~~~l~s~s~dg-----------------   44 (250)
                      |.-.|.++|+.+.+++......                   | ...++.+.+. +++.++.++                 
T Consensus       177 v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~  255 (488)
T cd00216         177 LRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYT  255 (488)
T ss_pred             EEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCce
Confidence            3456888888887776111110                   1 1234444455 577776554                 


Q ss_pred             -eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC---EEEEEeCCCeEEEEeCCCceeEee
Q 025649           45 -KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK---ICVVAKGDGVVDVINIESELNISR  120 (250)
Q Consensus        45 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~~  120 (250)
                       .|.-.|..+|+.+..++....+.-.  .....+..+..+.  +     .++.   .+++++.+|.+...|.++|+.+..
T Consensus       256 ~~l~Ald~~tG~~~W~~~~~~~~~~~--~~~~s~p~~~~~~--~-----~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~  326 (488)
T cd00216         256 DSIVALDADTGKVKWFYQTTPHDLWD--YDGPNQPSLADIK--P-----KDGKPVPAIVHAPKNGFFYVLDRTTGKLISA  326 (488)
T ss_pred             eeEEEEcCCCCCEEEEeeCCCCCCcc--cccCCCCeEEecc--c-----cCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence             7999999999998887643110000  0000000111111  0     1233   678888999999999999988765


Q ss_pred             cc
Q 025649          121 SK  122 (250)
Q Consensus       121 ~~  122 (250)
                      ..
T Consensus       327 ~~  328 (488)
T cd00216         327 RP  328 (488)
T ss_pred             eE
Confidence            43

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.07  E-value=0.081  Score=40.15  Aligned_cols=107  Identities=14%  Similarity=0.200  Sum_probs=64.8

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec----------CCCeEEEEEccCCCCccceecCCCCCCCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG----------LDSKLVMWDFSKGRPNKIVNFGLPENNGNA   71 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~   71 (250)
                      +.++|..+++.+..+..+..   -.+..+|+++ .+++++          ..-.|.+||..+.+....+..+..    +.
T Consensus        19 v~viD~d~~k~lGmi~~g~~---~~~~~spdgk-~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k----~R   90 (342)
T PF06433_consen   19 VYVIDADSGKLLGMIDTGFL---GNVALSPDGK-TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK----PR   90 (342)
T ss_dssp             EEEEETTTTEEEEEEEEESS---EEEEE-TTSS-EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-----B
T ss_pred             EEEEECCCCcEEEEeecccC---CceeECCCCC-EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc----ch
Confidence            67888889998888773333   3466899998 566542          234699999999887777665510    00


Q ss_pred             CcccCCCceeEEecCCCcccCCCCCEEEEEe--CCCeEEEEeCCCceeEeeccCC
Q 025649           72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKST  124 (250)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~  124 (250)
                      ...  -...+..+++.      +++++++..  --..|.|.|+..++...++..+
T Consensus        91 ~~~--~~~~~~~~ls~------dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P  137 (342)
T PF06433_consen   91 AQV--VPYKNMFALSA------DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP  137 (342)
T ss_dssp             --B--S--GGGEEE-T------TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT
T ss_pred             hee--cccccceEEcc------CCcEEEEEccCCCCeEEEEECCCCceeeeecCC
Confidence            000  01223345555      777776653  3456788888877766655443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.07  E-value=0.0095  Score=47.13  Aligned_cols=124  Identities=10%  Similarity=0.009  Sum_probs=81.1

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCe-EE-----EEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW-EV-----ISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQC   74 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~-~l-----~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~   74 (250)
                      |+-.|++.|+.+...+ -|.+ |.-+.+.|+.+. .|     +.|-.|..|.-||.+- +..+..+..+.    .    .
T Consensus       358 l~klDIE~GKIVeEWk-~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k----q----y  427 (644)
T KOG2395|consen  358 LYKLDIERGKIVEEWK-FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK----Q----Y  427 (644)
T ss_pred             ceeeecccceeeeEee-ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc----c----c
Confidence            3446888999999988 5555 888888887641 11     2355577888899873 22111111010    0    0


Q ss_pred             cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE
Q 025649           75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE  143 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (250)
                      .......|.+-.       ...++++|+.+|.|++||- .+.............|..+..+.+|+.++.
T Consensus       428 ~~k~nFsc~aTT-------~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~  488 (644)
T KOG2395|consen  428 STKNNFSCFATT-------ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILA  488 (644)
T ss_pred             ccccccceeeec-------CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEE
Confidence            012233444444       4678999999999999998 666666666666788999999999998873

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=97.04  E-value=0.036  Score=46.86  Aligned_cols=39  Identities=18%  Similarity=0.233  Sum_probs=33.1

Q ss_pred             CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649          163 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  201 (250)
Q Consensus       163 ~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~  201 (250)
                      .+...|..+.|+|+++++..|+.-..|+++|+||+....
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            345689999999888778899998999999999997654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.01  E-value=0.079  Score=38.93  Aligned_cols=175  Identities=10%  Similarity=0.027  Sum_probs=96.1

Q ss_pred             EEEEcccceeeeeeccCCCCC--eeeEEEcCCCCeEEEEecCC-----CeEEEEEccCC-CCccceecCCCCCCCCCCcc
Q 025649            3 QIIDIRQHCLYKSLRAGHSSI--CSSVQFIPWKPWEVISGGLD-----SKLVMWDFSKG-RPNKIVNFGLPENNGNAGQC   74 (250)
Q Consensus         3 ~iwd~~~~~~~~~l~~~h~~~--v~~l~~~~~~~~~l~s~s~d-----g~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~   74 (250)
                      .++|....+...++. ..++.  --.=.|||||. +|...-.|     |.|-+||.+.+ +.+..+..            
T Consensus        94 ~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~dG~-~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t------------  159 (366)
T COG3490          94 MVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPDGR-LLYATENDFDPNRGVIGVYDAREGFQRVGEFST------------  159 (366)
T ss_pred             EEECCCCCcCcEEEe-cccCceeecccccCCCCc-EEEeecCCCCCCCceEEEEecccccceeccccc------------
Confidence            467777666555543 22211  11235999999 56554333     78999999743 33333331            


Q ss_pred             cCCCceeEEecCCCcccCCCCCEEEEEeC------------------CCeEEEEeCCCceeEeeccCC---CCCCcccee
Q 025649           75 YNPAFVHAIAIPDADMLDKTNKICVVAKG------------------DGVVDVINIESELNISRSKST---TKPLKGSQS  133 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~  133 (250)
                       +--.-+.+.+.+      ||+.++.+..                  .-.+.+.|..++..+.+...+   ....+..++
T Consensus       160 -~GiGpHev~lm~------DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld  232 (366)
T COG3490         160 -HGIGPHEVTLMA------DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLD  232 (366)
T ss_pred             -CCcCcceeEEec------CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeee
Confidence             223346777777      8998887743                  113445555555554433322   235677888


Q ss_pred             ecccceeEEEeeeeeecc--C-------eeeeeecccc-------CccccEEEEEeecCCCCCcEE-EEeeCCCeEEEEe
Q 025649          134 TSKVNIRDAEMEILDQSG--G-------KRLHLDYSVG-------GHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWD  196 (250)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~-------~h~~~v~~~~~~p~~~~~~~l-~s~~~d~~i~iwd  196 (250)
                      ..+||...+. +-+.+--  .       ...+.+.-+.       ...+.|-+++.+   .+..++ +|.=..+...+||
T Consensus       233 ~g~dgtvwfg-cQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n---~~~glV~lTSP~GN~~vi~d  308 (366)
T COG3490         233 IGRDGTVWFG-CQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN---RRDGLVALTSPRGNRAVIWD  308 (366)
T ss_pred             eCCCCcEEEE-EEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeec---ccCCeEEEecCCCCeEEEEE
Confidence            8999988772 2221110  0       0111111111       123456777776   444444 4444566889999


Q ss_pred             cCCCcc
Q 025649          197 CSRFQG  202 (250)
Q Consensus       197 ~~~~~~  202 (250)
                      ..++..
T Consensus       309 a~tG~v  314 (366)
T COG3490         309 AATGAV  314 (366)
T ss_pred             cCCCcE
Confidence            999843

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.96  E-value=0.17  Score=42.06  Aligned_cols=187  Identities=16%  Similarity=0.085  Sum_probs=90.7

Q ss_pred             CCeeeEEEcCCCCeEEEEec-----CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC
Q 025649           22 SICSSVQFIPWKPWEVISGG-----LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK   96 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (250)
                      ..+...+++|+|+...++..     .|+.-.||-...+.....+..+              .....-.|+|      +|+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--------------~~~t~PsWsp------DG~  409 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--------------HSLTRPSWSL------DAD  409 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--------------CCCCCceECC------CCC
Confidence            46788999999984333331     2444344433222222333322              2366778887      777


Q ss_pred             EEEEEeCC------------CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec--------cCe-ee
Q 025649           97 ICVVAKGD------------GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS--------GGK-RL  155 (250)
Q Consensus        97 ~l~~~~~d------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~  155 (250)
                      .+.+....            +.+.+.+++.+....    .....+..+.|||||..++.+..-...        ... ..
T Consensus       410 ~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l  485 (591)
T PRK13616        410 AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYAL  485 (591)
T ss_pred             ceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceee
Confidence            66665432            233333443332221    223579999999999988752211111        011 11


Q ss_pred             eeecccc-CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649          156 HLDYSVG-GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       156 ~~~~~~~-~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  234 (250)
                      .....+. +-...+.++.|.   .++.++ .+..++...+|.+.-....      ...........++..++-.+ +  .
T Consensus       486 ~~~~~l~~~l~~~~~~l~W~---~~~~L~-V~~~~~~~~v~~v~vDG~~------~~~~~~~n~~~~v~~vaa~~-~--~  552 (591)
T PRK13616        486 TNPREVGPGLGDTAVSLDWR---TGDSLV-VGRSDPEHPVWYVNLDGSN------SDALPSRNLSAPVVAVAASP-S--T  552 (591)
T ss_pred             cccEEeecccCCccccceEe---cCCEEE-EEecCCCCceEEEecCCcc------ccccCCCCccCceEEEecCC-c--e
Confidence            1111122 222335788998   777754 5554454445544332110      11001111245566676654 2  3


Q ss_pred             EEEeeCCceEE
Q 025649          235 LVVCDTSKVVK  245 (250)
Q Consensus       235 l~s~~~d~~i~  245 (250)
                      ++....++.+.
T Consensus       553 iyv~~~~g~~~  563 (591)
T PRK13616        553 VYVTDARAVLQ  563 (591)
T ss_pred             EEEEcCCceEE
Confidence            55555566443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.93  E-value=0.0051  Score=31.89  Aligned_cols=31  Identities=19%  Similarity=0.346  Sum_probs=27.9

Q ss_pred             cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecC
Q 025649          165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  198 (250)
Q Consensus       165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~  198 (250)
                      ...|.+++|+   |...++|.++.||.|.++.+.
T Consensus        11 ~~~v~~~~w~---P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWC---PTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEEC---CCCCEEEEEECCCeEEEEECC
Confidence            3569999999   889999999999999999983

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.69  E-value=0.18  Score=38.36  Aligned_cols=127  Identities=15%  Similarity=0.136  Sum_probs=78.5

Q ss_pred             CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe----------CCCeEEEEeCC
Q 025649           44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK----------GDGVVDVINIE  113 (250)
Q Consensus        44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~~~d~~  113 (250)
                      +.+.+.|.++++.+..+..+               ..-.+.++|      +++.++++.          ..-.|.+||..
T Consensus        17 ~rv~viD~d~~k~lGmi~~g---------------~~~~~~~sp------dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~   75 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG---------------FLGNVALSP------DGKTIYVAETFYSRGTRGERTDVVEIWDTQ   75 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE---------------SSEEEEE-T------TSSEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred             ceEEEEECCCCcEEEEeecc---------------cCCceeECC------CCCEEEEEEEEEeccccccceeEEEEEecC
Confidence            57999999999888888744               344566787      899888763          24479999999


Q ss_pred             CceeEeeccCCCC------CCccceeecccceeEEE--------eeeeeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649          114 SELNISRSKSTTK------PLKGSQSTSKVNIRDAE--------MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER  179 (250)
Q Consensus       114 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  179 (250)
                      +-....++..+.+      .....++++.||++++.        +...|....   +.+.++..  ..  |.-.-|..+ 
T Consensus        76 TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~---kvv~ei~~--PG--C~~iyP~~~-  147 (342)
T PF06433_consen   76 TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK---KVVGEIDT--PG--CWLIYPSGN-  147 (342)
T ss_dssp             TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT---EEEEEEEG--TS--EEEEEEEET-
T ss_pred             cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCC---ceeeeecC--CC--EEEEEecCC-
Confidence            9877766555543      23455788999999873        222232222   22223321  11  222223212 


Q ss_pred             CcEEEEeeCCCeEEEEecCCC
Q 025649          180 GKYLISGGNDKLVKVWDCSRF  200 (250)
Q Consensus       180 ~~~l~s~~~d~~i~iwd~~~~  200 (250)
                       +-+.+-|.||.+.-..+...
T Consensus       148 -~~F~~lC~DGsl~~v~Ld~~  167 (342)
T PF06433_consen  148 -RGFSMLCGDGSLLTVTLDAD  167 (342)
T ss_dssp             -TEEEEEETTSCEEEEEETST
T ss_pred             -CceEEEecCCceEEEEECCC
Confidence             45778888999999988853

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.67  E-value=0.012  Score=50.55  Aligned_cols=70  Identities=14%  Similarity=0.167  Sum_probs=52.2

Q ss_pred             EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  115 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  115 (250)
                      .++.|+..|.+...|....-........            ...+|++++|+.      +|+.++.|-.+|.|.+||+..+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~------------v~~~Vtsvafn~------dg~~l~~G~~~G~V~v~D~~~~  162 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNER------------VQGPVTSVAFNQ------DGSLLLAGLGDGHVTVWDMHRA  162 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCc------------cCCcceeeEecC------CCceeccccCCCcEEEEEccCC
Confidence            5888898999999888653111011101            246899999998      9999999999999999999987


Q ss_pred             eeEeeccC
Q 025649          116 LNISRSKS  123 (250)
Q Consensus       116 ~~~~~~~~  123 (250)
                      +....+..
T Consensus       163 k~l~~i~e  170 (1206)
T KOG2079|consen  163 KILKVITE  170 (1206)
T ss_pred             cceeeeee
Confidence            76655443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.66  E-value=0.016  Score=40.85  Aligned_cols=105  Identities=15%  Similarity=0.319  Sum_probs=64.1

Q ss_pred             EEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCC
Q 025649           36 EVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  114 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~  114 (250)
                      .++.|+.+|.|.+|+..- +.....+..+             ...|.++...-     .++.+..+++.||.|+.|++.-
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-------------~e~i~~~Ip~~-----~~~~~~c~~~~dg~ir~~n~~p  133 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSG-------------EESIDLGIPNG-----RDSSLGCVGAQDGRIRACNIKP  133 (238)
T ss_pred             eEEeecccceEEEecCCccchHHHhhhcc-------------cccceeccccc-----cccceeEEeccCCceeeecccc
Confidence            688999999999999862 2222222211             12233322221     2567889999999999999875


Q ss_pred             ceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCcc-ccEEEEEeecCCCCCcEEEEe--eCCCe
Q 025649          115 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCVAFSMFGERGKYLISG--GNDKL  191 (250)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~l~s~--~~d~~  191 (250)
                      .+.+...                                        ..|. .++.....+   ..+++++.+  |.|..
T Consensus       134 ~k~~g~~----------------------------------------g~h~~~~~e~~ivv---~sd~~i~~a~~S~d~~  170 (238)
T KOG2444|consen  134 NKVLGYV----------------------------------------GQHNFESGEELIVV---GSDEFLKIADTSHDRV  170 (238)
T ss_pred             Cceeeee----------------------------------------ccccCCCcceeEEe---cCCceEEeeccccchh
Confidence            4432211                                        1222 233344444   456777777  88888


Q ss_pred             EEEEecCCCc
Q 025649          192 VKVWDCSRFQ  201 (250)
Q Consensus       192 i~iwd~~~~~  201 (250)
                      ++.|++..-.
T Consensus       171 ~k~W~ve~~~  180 (238)
T KOG2444|consen  171 LKKWNVEKIK  180 (238)
T ss_pred             hhhcchhhhh
Confidence            9999887643

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.50  E-value=0.33  Score=40.41  Aligned_cols=141  Identities=16%  Similarity=0.135  Sum_probs=74.2

Q ss_pred             EEEEecCCC------eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC-----
Q 025649           36 EVISGGLDS------KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-----  104 (250)
Q Consensus        36 ~l~s~s~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-----  104 (250)
                      +++.|+.++      .+..+|..+++........            .+..-.++++.       ++.+.++|+.|     
T Consensus       287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~------------~~r~~~~~~~~-------~~~lYv~GG~~~~~~~  347 (571)
T KOG4441|consen  287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP------------SPRCRVGVAVL-------NGKLYVVGGYDSGSDR  347 (571)
T ss_pred             EEEECCCCCCCcccceeEEecCCcCcEeecCCCC------------cccccccEEEE-------CCEEEEEccccCCCcc
Confidence            777787773      6788888776433222211            22333445554       57888999888     


Q ss_pred             -CeEEEEeCCCceeEeeccCCCCCCccceeecc-cceeEEEeeeeeeccC-eeee----------eeccccCccccEEEE
Q 025649          105 -GVVDVINIESELNISRSKSTTKPLKGSQSTSK-VNIRDAEMEILDQSGG-KRLH----------LDYSVGGHTAAASCV  171 (250)
Q Consensus       105 -~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~h~~~v~~~  171 (250)
                       ..+..||.+.++.....  +-...-....... +|...+ +|..++... ...+          .+..+....... ++
T Consensus       348 l~~ve~YD~~~~~W~~~a--~M~~~R~~~~v~~l~g~iYa-vGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~-gv  423 (571)
T KOG4441|consen  348 LSSVERYDPRTNQWTPVA--PMNTKRSDFGVAVLDGKLYA-VGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGH-GV  423 (571)
T ss_pred             cceEEEecCCCCceeccC--CccCccccceeEEECCEEEE-EeccccccccccEEEecCCCCcccccCCCCcceeee-EE
Confidence             36778888887643311  1112222233333 444444 777665432 1111          111111111111 22


Q ss_pred             EeecCCCCCcEEEEeeCCC------eEEEEecCCCcce
Q 025649          172 AFSMFGERGKYLISGGNDK------LVKVWDCSRFQGV  203 (250)
Q Consensus       172 ~~~p~~~~~~~l~s~~~d~------~i~iwd~~~~~~~  203 (250)
                      +-    -+|.+.+.|+.++      ++..||..+....
T Consensus       424 ~~----~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  424 AV----LGGKLYIIGGGDGSSNCLNSVECYDPETNTWT  457 (571)
T ss_pred             EE----ECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence            22    3678888888554      5778888876543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.17  Score=35.51  Aligned_cols=91  Identities=5%  Similarity=-0.058  Sum_probs=57.1

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |++||+.+++.+..-+ -....+..=-...-+...-.-.-.+|.-..+|.++.+++..+.++              ..-+
T Consensus        70 ir~~~L~~gq~~~s~~-l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~--------------GeGW  134 (262)
T COG3823          70 IRVSDLTTGQEIFSEK-LAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE--------------GEGW  134 (262)
T ss_pred             eEEEeccCceEEEEee-cCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC--------------Ccce
Confidence            7889999888876655 222233322222333323344566888899999998888888755              3345


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  115 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  115 (250)
                      .++.        +++.|..+....+++.-|.++.
T Consensus       135 gLt~--------d~~~LimsdGsatL~frdP~tf  160 (262)
T COG3823         135 GLTS--------DDKNLIMSDGSATLQFRDPKTF  160 (262)
T ss_pred             eeec--------CCcceEeeCCceEEEecCHHHh
Confidence            5543        4555666666778888787753

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.43  E-value=0.24  Score=36.55  Aligned_cols=143  Identities=15%  Similarity=0.035  Sum_probs=79.9

Q ss_pred             CeeeEEEcCCCCeEEEEec-CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           23 ICSSVQFIPWKPWEVISGG-LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      .+.+.+++++++ .++... .++.-.||-...+........+              ..+....|.+      ++...++.
T Consensus        25 ~~~s~AvS~dg~-~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--------------~~l~~PS~d~------~g~~W~v~   83 (253)
T PF10647_consen   25 DVTSPAVSPDGS-RVAAVSEGDGGRSLYVGPAGGPVRPVLTG--------------GSLTRPSWDP------DGWVWTVD   83 (253)
T ss_pred             cccceEECCCCC-eEEEEEEcCCCCEEEEEcCCCcceeeccC--------------CccccccccC------CCCEEEEE
Confidence            688999999998 454433 2333333433333333332212              3566677777      77777777


Q ss_pred             eCCCeEEEEe-CCCcee-EeeccCCCCC-CccceeecccceeEEEeee----eeec--------cC---eeeeeeccccC
Q 025649          102 KGDGVVDVIN-IESELN-ISRSKSTTKP-LKGSQSTSKVNIRDAEMEI----LDQS--------GG---KRLHLDYSVGG  163 (250)
Q Consensus       102 ~~d~~i~~~d-~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~--------~~---~~~~~~~~~~~  163 (250)
                      ..+...+++. ...+.. .......... .|..+.+||||..++.+..    ....        ..   .....+.....
T Consensus        84 ~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~  163 (253)
T PF10647_consen   84 DGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP  163 (253)
T ss_pred             cCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc
Confidence            7777777774 333322 2222222222 8999999999999885331    1111        01   00011122223


Q ss_pred             ccccEEEEEeecCCCCCcEEEEeeCC
Q 025649          164 HTAAASCVAFSMFGERGKYLISGGND  189 (250)
Q Consensus       164 h~~~v~~~~~~p~~~~~~~l~s~~~d  189 (250)
                      ....+..+.|.   +++.+++.+...
T Consensus       164 ~~~~v~~v~W~---~~~~L~V~~~~~  186 (253)
T PF10647_consen  164 LLSDVTDVAWS---DDSTLVVLGRSA  186 (253)
T ss_pred             ccCcceeeeec---CCCEEEEEeCCC
Confidence            34678999999   777777666543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.32  E-value=0.41  Score=38.14  Aligned_cols=96  Identities=8%  Similarity=0.113  Sum_probs=55.8

Q ss_pred             CcEEEEcccceeeeee-ccCCCCCeeeEEEcCCCCeEEEEecCC----------CeEEEEEccCCCCccceecCCCCCCC
Q 025649            1 MWQIIDIRQHCLYKSL-RAGHSSICSSVQFIPWKPWEVISGGLD----------SKLVMWDFSKGRPNKIVNFGLPENNG   69 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l-~~~h~~~v~~l~~~~~~~~~l~s~s~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~   69 (250)
                      +|++.|+++|+.+... . .  .....+.|.++++.++.+...+          ..|..|++.++..-..+-++.+    
T Consensus       151 ~l~v~Dl~tg~~l~d~i~-~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~----  223 (414)
T PF02897_consen  151 TLRVFDLETGKFLPDGIE-N--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP----  223 (414)
T ss_dssp             EEEEEETTTTEEEEEEEE-E--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T----
T ss_pred             EEEEEECCCCcCcCCccc-c--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec----
Confidence            4789999999876532 3 1  1223499999998555554332          2477788766544322222210    


Q ss_pred             CCCcccCCCc-eeEEecCCCcccCCCCCEEEEEeC---C-CeEEEEeCCCc
Q 025649           70 NAGQCYNPAF-VHAIAIPDADMLDKTNKICVVAKG---D-GVVDVINIESE  115 (250)
Q Consensus        70 ~~~~~~~~~~-v~~~~~~~~~~~~~~~~~l~~~~~---d-~~i~~~d~~~~  115 (250)
                            .... ...+..++      ++++|+..+.   + ..+.+.|+..+
T Consensus       224 ------~~~~~~~~~~~s~------d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  224 ------DEPFWFVSVSRSK------DGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             ------TCTTSEEEEEE-T------TSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             ------CCCcEEEEEEecC------cccEEEEEEEccccCCeEEEEecccc
Confidence                  1222 45677787      8888765532   3 46788888864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.29  E-value=0.09  Score=41.20  Aligned_cols=109  Identities=17%  Similarity=0.246  Sum_probs=54.1

Q ss_pred             CcEEEEcccceeeeeeccCCCC-CeeeEEEc--CCCCeEEEEecCCCeEEEEEc-cCCC--CccceecCCCCCCCC----
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSS-ICSSVQFI--PWKPWEVISGGLDSKLVMWDF-SKGR--PNKIVNFGLPENNGN----   70 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~-~v~~l~~~--~~~~~~l~s~s~dg~v~iwd~-~~~~--~~~~~~~~~~~~~~~----   70 (250)
                      ++.+||+.+.+.++++..+-.+ ....|.|.  |+...-++.+....+|..|-- +.++  ..+.+..+......-    
T Consensus       223 ~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~  302 (461)
T PF05694_consen  223 SLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPE  302 (461)
T ss_dssp             EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---G
T ss_pred             eEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccc
Confidence            4789999999999999844333 45677775  444434555555555555543 3333  112222221000000    


Q ss_pred             --CCcccCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCc
Q 025649           71 --AGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESE  115 (250)
Q Consensus        71 --~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~  115 (250)
                        .....-+.-|+.+.+|.      |.++|..++ .+|.|+-||+...
T Consensus       303 ml~~~~~~P~LitDI~iSl------DDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  303 MLKPFGAVPPLITDILISL------DDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             GGGGG-EE------EEE-T------TS-EEEEEETTTTEEEEEE-SST
T ss_pred             cccccccCCCceEeEEEcc------CCCEEEEEcccCCcEEEEecCCC
Confidence              00011245678888887      888887665 6899999999873

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.26  E-value=0.027  Score=28.34  Aligned_cols=32  Identities=9%  Similarity=0.012  Sum_probs=26.5

Q ss_pred             CCeeeEEEcCCCC--eEEEEecCCCeEEEEEccC
Q 025649           22 SICSSVQFIPWKP--WEVISGGLDSKLVMWDFSK   53 (250)
Q Consensus        22 ~~v~~l~~~~~~~--~~l~s~s~dg~v~iwd~~~   53 (250)
                      +.|.+++|+|...  .+|+-+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999997543  4888888889999999985

It contains a characteristic DLL sequence motif.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.19  E-value=0.55  Score=38.39  Aligned_cols=104  Identities=13%  Similarity=0.059  Sum_probs=60.4

Q ss_pred             cEEEEcccceeeeeeccCCCC------Cee--eEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSS------ICS--SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~------~v~--~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~   73 (250)
                      |.-.|.++|+.+.+++ ....      .+.  .+... ++. .++.++.+|.|.-+|.++|+.+..+......       
T Consensus        73 l~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~g~~~~-~~~-~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~-------  142 (488)
T cd00216          73 LFALDAATGKVLWRYD-PKLPADRGCCDVVNRGVAYW-DPR-KVFFGTFDGRLVALDAETGKQVWKFGNNDQV-------  142 (488)
T ss_pred             EEEEECCCChhhceeC-CCCCccccccccccCCcEEc-cCC-eEEEecCCCeEEEEECCCCCEeeeecCCCCc-------
Confidence            4556777888777765 2221      010  11111 213 6778888999999999999998887744110       


Q ss_pred             ccCCCceeEEecCCCcccCCCCCEEEEEe---------CCCeEEEEeCCCceeEeeccC
Q 025649           74 CYNPAFVHAIAIPDADMLDKTNKICVVAK---------GDGVVDVINIESELNISRSKS  123 (250)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~---------~d~~i~~~d~~~~~~~~~~~~  123 (250)
                          ..-..+.-+|..    .+..++.++         .++.+..+|..+++.......
T Consensus       143 ----~~~~~i~ssP~v----~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         143 ----PPGYTMTGAPTI----VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             ----CcceEecCCCEE----ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence                000112222211    224444443         368899999999987766544

The alignment model contains an 8-bladed beta-propeller.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.15  E-value=0.66  Score=38.98  Aligned_cols=53  Identities=11%  Similarity=0.059  Sum_probs=39.7

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI   59 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~   59 (250)
                      |+|++. +|+++.++. -....+-.+.|+.+..  |+....+|++.+|++- |+.+..
T Consensus        66 I~If~~-sG~lL~~~~-w~~~~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~-ge~ie~  118 (829)
T KOG2280|consen   66 IRIFNI-SGQLLGRIL-WKHGELIGMGWSDDEE--LICVQKDGTVHVYGLL-GEFIES  118 (829)
T ss_pred             EEEEec-cccchHHHH-hcCCCeeeecccCCce--EEEEeccceEEEeecc-hhhhcc
Confidence            677776 678777766 4444778999999875  7778899999999985 444433

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.14  E-value=0.4  Score=36.38  Aligned_cols=100  Identities=10%  Similarity=-0.056  Sum_probs=56.5

Q ss_pred             CCccceeecccceeEEEeeeeeecc------------CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC-eEE
Q 025649          127 PLKGSQSTSKVNIRDAEMEILDQSG------------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK-LVK  193 (250)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~-~i~  193 (250)
                      ...+.++||||++.+..+-+.....            ... .....+....+..-.++..   .+|.+.+++-.+| .|.
T Consensus       163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~-~~~~~~~~~~G~PDG~~vD---adG~lw~~a~~~g~~v~  238 (307)
T COG3386         163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR-RGFVDFDEEPGLPDGMAVD---ADGNLWVAAVWGGGRVV  238 (307)
T ss_pred             EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc-ceEEEccCCCCCCCceEEe---CCCCEEEecccCCceEE
Confidence            5667899999998776432211110            111 1111222233444556666   7788876555554 899


Q ss_pred             EEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE-EEeeC
Q 025649          194 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL-VVCDT  240 (250)
Q Consensus       194 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~  240 (250)
                      +|+.. +         +++....-....+.+++|--++.+.| +|+..
T Consensus       239 ~~~pd-G---------~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         239 RFNPD-G---------KLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             EECCC-C---------cEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence            99988 5         45555555556777787765444444 44433

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.13  E-value=0.52  Score=37.55  Aligned_cols=100  Identities=13%  Similarity=-0.073  Sum_probs=59.8

Q ss_pred             CeeeEEEcCCCCeEEEEecCC----CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           23 ICSSVQFIPWKPWEVISGGLD----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      .+....++|+++.++++-+..    .+|++.|+.+++.+...- .             ......+.|.+      +++.|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~-------------~~~~~~~~W~~------d~~~~  184 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-E-------------NPKFSSVSWSD------DGKGF  184 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-E-------------EEESEEEEECT------TSSEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-c-------------ccccceEEEeC------CCCEE
Confidence            344678999999444443333    459999999996554321 1             11122388887      77766


Q ss_pred             EEEeC-----------CCeEEEEeCCCceeE--eeccCCCCCC-ccceeecccceeEE
Q 025649           99 VVAKG-----------DGVVDVINIESELNI--SRSKSTTKPL-KGSQSTSKVNIRDA  142 (250)
Q Consensus        99 ~~~~~-----------d~~i~~~d~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~  142 (250)
                      +....           ...|..|.+.+....  ..+....... ...+..++|+++++
T Consensus       185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~  242 (414)
T PF02897_consen  185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLF  242 (414)
T ss_dssp             EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEE
T ss_pred             EEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEE
Confidence            55542           334788888775433  2333333233 56788899999987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.95  E-value=0.99  Score=39.22  Aligned_cols=174  Identities=9%  Similarity=0.053  Sum_probs=97.0

Q ss_pred             cEEEEcccceeeeeeccCCCC---CeeeEEEcCCCCeEEEEecC----------CCeEEEEEccCCCCccceecCCCCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSS---ICSSVQFIPWKPWEVISGGL----------DSKLVMWDFSKGRPNKIVNFGLPENN   68 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~---~v~~l~~~~~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~~~~~~   68 (250)
                      ++++|-+|.+.+...+.....   .|.++.|..|...+++.|..          .|.|.++....+..+......     
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-----  826 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET-----  826 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee-----
Confidence            577887777766554422222   34455588774337777642          477777777663333332211     


Q ss_pred             CCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee
Q 025649           69 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD  148 (250)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (250)
                            .-.+.+.++..-       +|+++|.-  +..|++|++.+++.+                              
T Consensus       827 ------~v~Gav~aL~~f-------ngkllA~I--n~~vrLye~t~~~eL------------------------------  861 (1096)
T KOG1897|consen  827 ------VVKGAVYALVEF-------NGKLLAGI--NQSVRLYEWTTEREL------------------------------  861 (1096)
T ss_pred             ------eeccceeehhhh-------CCeEEEec--CcEEEEEEcccccee------------------------------
Confidence                  012334444333       67776654  468999999875422                              


Q ss_pred             eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceee-eeeccCCceeEEEe
Q 025649          149 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI-KNINLNKKVNWLCT  227 (250)
Q Consensus       149 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~  227 (250)
                                +.-..|..++..+...   -.|+.++.|..-+.+.+-..+..+.       .+.. ...-+.....++.+
T Consensus       862 ----------r~e~~~~~~~~aL~l~---v~gdeI~VgDlm~Sitll~y~~~eg-------~f~evArD~~p~Wmtavei  921 (1096)
T KOG1897|consen  862 ----------RIECNISNPIIALDLQ---VKGDEIAVGDLMRSITLLQYKGDEG-------NFEEVARDYNPNWMTAVEI  921 (1096)
T ss_pred             ----------hhhhcccCCeEEEEEE---ecCcEEEEeeccceEEEEEEeccCC-------ceEEeehhhCccceeeEEE
Confidence                      2223455667777777   6788888887777766655544321       1211 12234555666666


Q ss_pred             cCCCCCeEEEeeCCceEEEE
Q 025649          228 TPTESENLVVCDTSKVVKVY  247 (250)
Q Consensus       228 ~~~~~~~l~s~~~d~~i~vw  247 (250)
                      -  +++.++-+..+|.+.+-
T Consensus       922 l--~~d~ylgae~~gNlf~v  939 (1096)
T KOG1897|consen  922 L--DDDTYLGAENSGNLFTV  939 (1096)
T ss_pred             e--cCceEEeecccccEEEE
Confidence            5  34455556666666543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.92  E-value=0.59  Score=36.38  Aligned_cols=55  Identities=9%  Similarity=-0.044  Sum_probs=28.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK   58 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~   58 (250)
                      +.+.|+++++..+--. +-........++|+++ .++-......|+--|+++.+...
T Consensus        62 ly~lDL~t~~i~QLTd-g~g~~~~g~~~s~~~~-~~~Yv~~~~~l~~vdL~T~e~~~  116 (386)
T PF14583_consen   62 LYLLDLATGEITQLTD-GPGDNTFGGFLSPDDR-ALYYVKNGRSLRRVDLDTLEERV  116 (386)
T ss_dssp             EEEEETTT-EEEE----SS-B-TTT-EE-TTSS-EEEEEETTTEEEEEETTT--EEE
T ss_pred             eEEEEcccCEEEECcc-CCCCCccceEEecCCC-eEEEEECCCeEEEEECCcCcEEE
Confidence            4567888887764444 3334444677788887 55444445678888888766433

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.90  E-value=0.24  Score=35.42  Aligned_cols=100  Identities=13%  Similarity=0.102  Sum_probs=62.7

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEE--ccCCCCcc---ceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWD--FSKGRPNK---IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK   96 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (250)
                      +--+.++|+.+.+.+.++-+.+-+|.-||  ..+|....   .+........       .+..--.+++..      +|+
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~-------e~~~PDGm~ID~------eG~  224 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPF-------ESLEPDGMTIDT------EGN  224 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCc-------CCCCCCcceEcc------CCc
Confidence            34457889888775667788889998888  55554321   1211100000       011112333333      788


Q ss_pred             EEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeec
Q 025649           97 ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS  135 (250)
Q Consensus        97 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  135 (250)
                      +.++.-..++|...|..+|+.+.++..+. ..+++.+|-
T Consensus       225 L~Va~~ng~~V~~~dp~tGK~L~eiklPt-~qitsccFg  262 (310)
T KOG4499|consen  225 LYVATFNGGTVQKVDPTTGKILLEIKLPT-PQITSCCFG  262 (310)
T ss_pred             EEEEEecCcEEEEECCCCCcEEEEEEcCC-CceEEEEec
Confidence            88888889999999999999888777763 555555554

>PHA03098 kelch-like protein; Provisional

Probab=95.89  E-value=0.83  Score=37.85  Aligned_cols=23  Identities=13%  Similarity=0.322  Sum_probs=14.4

Q ss_pred             CCCeEEEEecCC-----CeEEEEEccCCC
Q 025649           32 WKPWEVISGGLD-----SKLVMWDFSKGR   55 (250)
Q Consensus        32 ~~~~~l~s~s~d-----g~v~iwd~~~~~   55 (250)
                      ++. +++.|+.+     ..+..||..+++
T Consensus       342 ~~~-lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        342 NNR-IYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             CCE-EEEEeCCCCCEecceEEEEcCCCCc
Confidence            455 67777765     346677776554

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.87  E-value=0.61  Score=38.98  Aligned_cols=152  Identities=12%  Similarity=-0.102  Sum_probs=80.4

Q ss_pred             CceeEEecCCCcccCCCCCEEEEEe------CCC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee-
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAK------GDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-  148 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~------~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  148 (250)
                      ..+.+.+++|      +++.++...      .|.  .|.+++.....  ..+...  .....-.|+|+|..+.+....+ 
T Consensus       350 ~~vsspaiSp------dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~g--~~~t~PsWspDG~~lw~v~dg~~  419 (591)
T PRK13616        350 GNITSAALSR------SGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLEG--HSLTRPSWSLDADAVWVVVDGNT  419 (591)
T ss_pred             cCcccceECC------CCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeecC--CCCCCceECCCCCceEEEecCcc
Confidence            3567888888      888876665      243  45555543222  222111  2478889999988776532110 


Q ss_pred             ---eccC-eeeee-ecccc------CccccEEEEEeecCCCCCcEEEEeeCCCeEEE---EecCCCcceecccccceeee
Q 025649          149 ---QSGG-KRLHL-DYSVG------GHTAAASCVAFSMFGERGKYLISGGNDKLVKV---WDCSRFQGVQTSINNDLLIK  214 (250)
Q Consensus       149 ---~~~~-~~~~~-~~~~~------~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~i---wd~~~~~~~~~~~~~~~~~~  214 (250)
                         .... ...+. +....      ...+.|..+.||   |+|..++.-. ++.|.+   -....+. . ..  ..+...
T Consensus       420 ~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wS---pDG~RiA~i~-~g~v~Va~Vvr~~~G~-~-~l--~~~~~l  491 (591)
T PRK13616        420 VVRVIRDPATGQLARTPVDASAVASRVPGPISELQLS---RDGVRAAMII-GGKVYLAVVEQTEDGQ-Y-AL--TNPREV  491 (591)
T ss_pred             eEEEeccCCCceEEEEeccCchhhhccCCCcCeEEEC---CCCCEEEEEE-CCEEEEEEEEeCCCCc-e-ee--cccEEe
Confidence               0000 00000 00111      224579999999   8999888765 577777   3433332 1 00  011112


Q ss_pred             eeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          215 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ..+....+.++.|.+ ++. |+++..++...+|.+
T Consensus       492 ~~~l~~~~~~l~W~~-~~~-L~V~~~~~~~~v~~v  524 (591)
T PRK13616        492 GPGLGDTAVSLDWRT-GDS-LVVGRSDPEHPVWYV  524 (591)
T ss_pred             ecccCCccccceEec-CCE-EEEEecCCCCceEEE
Confidence            223344467888986 665 455555554555543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.79  E-value=0.55  Score=35.01  Aligned_cols=61  Identities=21%  Similarity=0.450  Sum_probs=41.6

Q ss_pred             CCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEE
Q 025649           32 WKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI  110 (250)
Q Consensus        32 ~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~  110 (250)
                      .++ .|+.|..+| |.+++.... .......               ...|..+...|      +-+.+++-+ |+.+.++
T Consensus         6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i~~---------------~~~I~ql~vl~------~~~~llvLs-d~~l~~~   61 (275)
T PF00780_consen    6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRILK---------------LSSITQLSVLP------ELNLLLVLS-DGQLYVY   61 (275)
T ss_pred             CCC-EEEEEECCC-EEEEEecCCccceeEee---------------cceEEEEEEec------ccCEEEEEc-CCccEEE
Confidence            455 688888888 889998333 2222222               33488888887      666666654 4999999


Q ss_pred             eCCCce
Q 025649          111 NIESEL  116 (250)
Q Consensus       111 d~~~~~  116 (250)
                      ++..-.
T Consensus        62 ~L~~l~   67 (275)
T PF00780_consen   62 DLDSLE   67 (275)
T ss_pred             Echhhc
Confidence            998643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.77  E-value=0.055  Score=27.25  Aligned_cols=30  Identities=13%  Similarity=0.131  Sum_probs=25.4

Q ss_pred             ceeEEEecCCCC--CeEEEeeCCceEEEEeCC
Q 025649          221 KVNWLCTTPTES--ENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       221 ~v~~~~~~~~~~--~~l~s~~~d~~i~vw~~~  250 (250)
                      .+.++.|+|..+  ++|+.+-.-|.|.|+|++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            577899998666  788989999999999975

It contains a characteristic DLL sequence motif.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.72  E-value=0.55  Score=34.52  Aligned_cols=95  Identities=6%  Similarity=0.012  Sum_probs=60.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |+.+|+++++......-...--=..++...+ + +..-.-.++...+||..+.+.+.++...              ..-+
T Consensus        70 l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~-l~qLTWk~~~~f~yd~~tl~~~~~~~y~--------------~EGW  133 (264)
T PF05096_consen   70 LRKVDLETGKVLQSVPLPPRYFGEGITILGD-K-LYQLTWKEGTGFVYDPNTLKKIGTFPYP--------------GEGW  133 (264)
T ss_dssp             EEEEETTTSSEEEEEE-TTT--EEEEEEETT-E-EEEEESSSSEEEEEETTTTEEEEEEE-S--------------SS--
T ss_pred             EEEEECCCCcEEEEEECCccccceeEEEECC-E-EEEEEecCCeEEEEccccceEEEEEecC--------------Ccce
Confidence            6788999988776554122223335555543 2 5555677899999999998888888744              3445


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEee
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  120 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  120 (250)
                      .++.        +++.|+.+.....|+++|..+.+....
T Consensus       134 GLt~--------dg~~Li~SDGS~~L~~~dP~~f~~~~~  164 (264)
T PF05096_consen  134 GLTS--------DGKRLIMSDGSSRLYFLDPETFKEVRT  164 (264)
T ss_dssp             EEEE--------CSSCEEEE-SSSEEEEE-TTT-SEEEE
T ss_pred             EEEc--------CCCEEEEECCccceEEECCcccceEEE
Confidence            6652        677788877888999999987655443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.63  E-value=1.1  Score=37.47  Aligned_cols=112  Identities=13%  Similarity=0.099  Sum_probs=64.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEe
Q 025649           94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF  173 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  173 (250)
                      -++..++-+....+.|||.+.+.....                                      ..+ ...+.|..+.|
T Consensus        40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~--------------------------------------~~f-~~~~~I~dLDW   80 (631)
T PF12234_consen   40 IKKIAVVDSSRSELTIWDTRSGVLEYE--------------------------------------ESF-SEDDPIRDLDW   80 (631)
T ss_pred             cCcEEEEECCCCEEEEEEcCCcEEEEe--------------------------------------eee-cCCCceeecee
Confidence            355555555667899999987552221                                      233 34567888888


Q ss_pred             ecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceee--eeeccC-CceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          174 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI--KNINLN-KKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       174 ~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      .. .|+|+.+++.+-.+.|.++-.....-....+.-..+.  ....|+ .+|.+.+|.+ +|. +++|+ ++.+.|++
T Consensus        81 ts-t~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~-LvV~s-GNqlfv~d  154 (631)
T PF12234_consen   81 TS-TPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGT-LVVGS-GNQLFVFD  154 (631)
T ss_pred             ee-cCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCe-EEEEe-CCEEEEEC
Confidence            63 3788888888888888888543211000000001111  223444 5788899986 775 55554 44577765

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.57  E-value=0.61  Score=34.05  Aligned_cols=89  Identities=15%  Similarity=-0.044  Sum_probs=61.2

Q ss_pred             CCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeC
Q 025649           33 KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI  112 (250)
Q Consensus        33 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~  112 (250)
                      |+ +++.|...|.+.+-+.++|.....+..-              +.|.+-+..     ++++..+..|+.|++.+..|.
T Consensus        63 gd-fVV~GCy~g~lYfl~~~tGs~~w~f~~~--------------~~vk~~a~~-----d~~~glIycgshd~~~yalD~  122 (354)
T KOG4649|consen   63 GD-FVVLGCYSGGLYFLCVKTGSQIWNFVIL--------------ETVKVRAQC-----DFDGGLIYCGSHDGNFYALDP  122 (354)
T ss_pred             CC-EEEEEEccCcEEEEEecchhheeeeeeh--------------hhhccceEE-----cCCCceEEEecCCCcEEEecc
Confidence            44 6888999999999999999888777633              333332222     248999999999999999999


Q ss_pred             CCceeEeeccCCCCCCccceeecc-cceeEE
Q 025649          113 ESELNISRSKSTTKPLKGSQSTSK-VNIRDA  142 (250)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  142 (250)
                      ++.......+-.. ..-.+-.+.| ++.+++
T Consensus       123 ~~~~cVykskcgG-~~f~sP~i~~g~~sly~  152 (354)
T KOG4649|consen  123 KTYGCVYKSKCGG-GTFVSPVIAPGDGSLYA  152 (354)
T ss_pred             cccceEEecccCC-ceeccceecCCCceEEE
Confidence            9987776654432 2223334444 444443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.52  E-value=0.15  Score=36.60  Aligned_cols=70  Identities=19%  Similarity=0.195  Sum_probs=45.7

Q ss_pred             CCCcEEEEeeCCCeEEEEecCCCcceecc-cccceeeeee----ccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          178 ERGKYLISGGNDKLVKVWDCSRFQGVQTS-INNDLLIKNI----NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       178 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .+++++++-..+|.+++||+.+++..... +-.+++....    .....|..+.... +|.-+++-+ +|..+.|+.
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEecc
Confidence            45788999999999999999998655321 1111111100    3455677777774 776666654 577888874

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.36  E-value=0.64  Score=32.93  Aligned_cols=50  Identities=18%  Similarity=-0.021  Sum_probs=35.7

Q ss_pred             CEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee
Q 025649           96 KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME  145 (250)
Q Consensus        96 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (250)
                      ..|+.+...+.|.+|++...........+.-..+..+.++..|+++++.-
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEE
Confidence            45544466688999999954444444444447888999999999999643

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.35  E-value=0.81  Score=34.09  Aligned_cols=113  Identities=12%  Similarity=0.025  Sum_probs=57.5

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec-CCCCCCCCCCcccCCCceeEEe-cCCCcccCCCCCEE
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF-GLPENNGNAGQCYNPAFVHAIA-IPDADMLDKTNKIC   98 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~l   98 (250)
                      ...|..+...|+-. .|+.-+ |+.+.++++........... ..+..............+...+ -..    ......|
T Consensus        35 ~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~----~~~~~~L  108 (275)
T PF00780_consen   35 LSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGG----HEGSRRL  108 (275)
T ss_pred             cceEEEEEEecccC-EEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccc----cccceEE
Confidence            34499999999877 455544 49999999976544331110 0000000000000123344444 111    0133444


Q ss_pred             EEEeCCCeEEEEeCCCc-----eeEeeccCCCCCCccceeecccceeEE
Q 025649           99 VVAKGDGVVDVINIESE-----LNISRSKSTTKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (250)
                      +++ ..+.|.+|.....     +...++..+  ..+..+.|.++.-.++
T Consensus       109 ~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~~~~i~v~  154 (275)
T PF00780_consen  109 CVA-VKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFLGNKICVG  154 (275)
T ss_pred             EEE-ECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEeCCEEEEE
Confidence            444 4568999888763     233444444  6777888885444443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.29  E-value=1  Score=37.68  Aligned_cols=108  Identities=14%  Similarity=-0.002  Sum_probs=70.0

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  100 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  100 (250)
                      .....-+.-+.-++ .-+.-+...++.|||.+.+.....-.+.            ..+.|..+.|..    .++++.+++
T Consensus        29 i~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~------------~~~~I~dLDWts----t~d~qsiLa   91 (631)
T PF12234_consen   29 ISNPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFS------------EDDPIRDLDWTS----TPDGQSILA   91 (631)
T ss_pred             CCCcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeec------------CCCceeeceeee----cCCCCEEEE
Confidence            34556666666665 3444444568999999887644333332            357889999975    358888888


Q ss_pred             EeCCCeEEEEeCC-----Cc----eeE--eeccCCCCCCccceeecccceeEEEee
Q 025649          101 AKGDGVVDVINIE-----SE----LNI--SRSKSTTKPLKGSQSTSKVNIRDAEME  145 (250)
Q Consensus       101 ~~~d~~i~~~d~~-----~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (250)
                      .+..+.|.+|--.     +.    ..+  ..+.......|....|.++|..++..|
T Consensus        92 VGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG  147 (631)
T PF12234_consen   92 VGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG  147 (631)
T ss_pred             EEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC
Confidence            8888889888542     11    111  123334446788999999998887533

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.10  E-value=1.3  Score=35.14  Aligned_cols=159  Identities=11%  Similarity=0.078  Sum_probs=67.2

Q ss_pred             EEEcccceeeeeeccC--CCCCeeeEEEcCCCCeEEEEec--------------------CCCeEEEEEccCCCCcccee
Q 025649            4 IIDIRQHCLYKSLRAG--HSSICSSVQFIPWKPWEVISGG--------------------LDSKLVMWDFSKGRPNKIVN   61 (250)
Q Consensus         4 iwd~~~~~~~~~l~~~--h~~~v~~l~~~~~~~~~l~s~s--------------------~dg~v~iwd~~~~~~~~~~~   61 (250)
                      +.|-++.+........  ...--..+-|.|..+ .++|.+                    ...++.+||+.+.+.++++.
T Consensus       161 llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id  239 (461)
T PF05694_consen  161 LLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID  239 (461)
T ss_dssp             EE-TTT--EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE
T ss_pred             EEcCccccccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe
Confidence            4455555555544411  122334666777666 676653                    24689999999999999998


Q ss_pred             cCCCCCCCCCCcccCCC-ceeEEecCCCcccCCCCCEEEEEe-CCCeEE-EEeCCCceeEeeccCCCCCCccceeecccc
Q 025649           62 FGLPENNGNAGQCYNPA-FVHAIAIPDADMLDKTNKICVVAK-GDGVVD-VINIESELNISRSKSTTKPLKGSQSTSKVN  138 (250)
Q Consensus        62 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (250)
                      ++.            .. ....+.|.-    +++..+-++++ -.++|- +|..+.+....+...               
T Consensus       240 Lg~------------~g~~pLEvRflH----~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi---------------  288 (461)
T PF05694_consen  240 LGE------------EGQMPLEVRFLH----DPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVI---------------  288 (461)
T ss_dssp             S-T------------TEEEEEEEEE-S----STT--EEEEEEE--EEEEEEEE-ETTEEEEEEEE---------------
T ss_pred             cCC------------CCCceEEEEecC----CCCccceEEEEeccceEEEEEEcCCCCeeeeEEE---------------
Confidence            771            11 234455532    23455444443 333343 333333332111000               


Q ss_pred             eeEEEeee--eeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCcce
Q 025649          139 IRDAEMEI--LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGV  203 (250)
Q Consensus       139 ~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~~~  203 (250)
                          .+..  .+.+..  ...++.+..-..-|+.+..|   .|.++|...+ .+|.|+.||+......
T Consensus       289 ----~ip~~~v~~~~l--p~ml~~~~~~P~LitDI~iS---lDDrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  289 ----DIPAKKVEGWIL--PEMLKPFGAVPPLITDILIS---LDDRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             ----EE--EE--SS-----GGGGGG-EE------EEE----TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             ----ECCCcccCcccc--cccccccccCCCceEeEEEc---cCCCEEEEEcccCCcEEEEecCCCCCC
Confidence                0000  000100  01122333334568889999   8888887665 5999999999886543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02713 hypothetical protein; Provisional

Probab=95.06  E-value=1.7  Score=36.23  Aligned_cols=23  Identities=4%  Similarity=0.208  Sum_probs=17.8

Q ss_pred             CCcEEEEeeCCC--eEEEEecCCCc
Q 025649          179 RGKYLISGGNDK--LVKVWDCSRFQ  201 (250)
Q Consensus       179 ~~~~l~s~~~d~--~i~iwd~~~~~  201 (250)
                      +|++.+.|+.|+  .+..||..+.+
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeeecceeehhhcCccccc
Confidence            578888898888  77778877754

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.05  E-value=1.4  Score=35.09  Aligned_cols=58  Identities=14%  Similarity=0.259  Sum_probs=36.7

Q ss_pred             cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          181 KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       181 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .++..-+.||.+.+|+-+...          ........--.--+++.+ .-+.|++++.+..+.-|.+
T Consensus       146 ~~IcVQS~DG~L~~feqe~~~----------f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  146 DFICVQSMDGSLSFFEQESFA----------FSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             eEEEEEecCceEEEEeCCcEE----------EEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecH
Confidence            577788999999999988842          122222111122345665 4446888888888877753

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.02  E-value=0.74  Score=36.48  Aligned_cols=46  Identities=11%  Similarity=0.069  Sum_probs=38.2

Q ss_pred             eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcccee
Q 025649           14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN   61 (250)
Q Consensus        14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~   61 (250)
                      ..|. .....+.+|..+|++. +.++...=|.|.++|+.++..++.++
T Consensus       301 ~~l~-D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~vvrmWK  346 (415)
T PF14655_consen  301 FGLP-DSKREGESICLSPSGR-LAAVTDSLGRVLLIDVARGIVVRMWK  346 (415)
T ss_pred             Eeec-cCCceEEEEEECCCCC-EEEEEcCCCcEEEEECCCChhhhhhc
Confidence            3455 5566789999999988 77777777999999999999888887

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.91  E-value=0.9  Score=32.21  Aligned_cols=167  Identities=12%  Similarity=0.072  Sum_probs=83.3

Q ss_pred             EEEEecCCCeEEEEEccCC--CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC------eE
Q 025649           36 EVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG------VV  107 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~------~i  107 (250)
                      .|..+...+.|.+|++...  +....|.              .-+.|..+.++.      .|++|++--.+.      .+
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~--------------Tv~~V~~l~y~~------~GDYlvTlE~k~~~~~~~fv   89 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFS--------------TVGRVLQLVYSE------AGDYLVTLEEKNKRSPVDFV   89 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEc--------------chhheeEEEecc------ccceEEEEEeecCCccceEE
Confidence            3444355678999999843  3444444              347889999998      899999985332      45


Q ss_pred             EEE-eCCCc---eeEe--eccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCc
Q 025649          108 DVI-NIESE---LNIS--RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK  181 (250)
Q Consensus       108 ~~~-d~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  181 (250)
                      |+| +.+..   ....  +...+   .+.              +.........++ +-+++- ...+.+++..|  -.|+
T Consensus        90 R~Y~NWr~~~~~~~~v~vRiaG~---~v~--------------~~~~~~~~~qle-iiElPl-~~~p~ciaCC~--~tG~  148 (215)
T PF14761_consen   90 RAYFNWRSQKEENSPVRVRIAGH---RVT--------------PSFNESSKDQLE-IIELPL-SEPPLCIACCP--VTGN  148 (215)
T ss_pred             EEEEEhhhhcccCCcEEEEEccc---ccc--------------cCCCCccccceE-EEEecC-CCCCCEEEecC--CCCC
Confidence            654 33321   1110  00000   000              000000011111 123333 45678888885  4576


Q ss_pred             EEEEeeCCCeEEEEecCCCcce-ecccccceeeeeeccC-C-ceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          182 YLISGGNDKLVKVWDCSRFQGV-QTSINNDLLIKNINLN-K-KVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       182 ~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~-~-~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +++..  ++.+.+|.+...... ...+--........|. + .+..+++..   .++|..+ +-.+++..+
T Consensus       149 LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~---~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  149 LLVGC--GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICE---GYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             EEEEc--CCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEEe---eEEEEec-CCEEEEEEE
Confidence            66543  578999988764321 0000001111111222 2 256666653   3677666 556777654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.83  E-value=1.7  Score=35.09  Aligned_cols=59  Identities=7%  Similarity=0.131  Sum_probs=41.3

Q ss_pred             CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          180 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       180 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .-+++.+|..|-|++||--..         .....+.+....|..+.... +|+++++.+. ..+.+-|+
T Consensus       573 sGyIa~as~kGDirLyDRig~---------rAKtalP~lG~aIk~idvta-~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRIGK---------RAKTALPGLGDAIKHIDVTA-NGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             CceEEEecCCCceeeehhhcc---------hhhhcCcccccceeeeEeec-CCcEEEEeec-ceEEEEec
Confidence            458999999999999996553         22234556677888888876 7887766663 34555543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.71  E-value=0.55  Score=38.75  Aligned_cols=49  Identities=4%  Similarity=0.037  Sum_probs=35.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE
Q 025649           94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (250)
                      .+.+++.+..+|.++.+|.++|+.+..........-.-+.|.-+|+..+
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv  519 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYV  519 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEE
Confidence            4567778888999999999999998877665333334455556666655

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.60  E-value=0.17  Score=25.22  Aligned_cols=33  Identities=9%  Similarity=0.075  Sum_probs=25.5

Q ss_pred             CCCCeEEEEecCCCeEEEEEccCCCCccceecC
Q 025649           31 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG   63 (250)
Q Consensus        31 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~   63 (250)
                      |+++.++++.-.+++|.++|..+++.+..+..+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            567756677777899999999888877777644

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.48  E-value=1.6  Score=33.21  Aligned_cols=192  Identities=10%  Similarity=-0.006  Sum_probs=99.4

Q ss_pred             eEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC
Q 025649           26 SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG  105 (250)
Q Consensus        26 ~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~  105 (250)
                      +-.|.++...++.+--..+.|.-|+..+++. ..+.              .+..+.++....      .+..|+++. .|
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~--------------~p~~~~~~~~~d------~~g~Lv~~~-~g   86 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP--------------SPGGFSSGALID------AGGRLIACE-HG   86 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE--------------CCCCcccceeec------CCCeEEEEc-cc
Confidence            3347777764666777778888888876643 2333              234444444432      344555543 23


Q ss_pred             eEEEEeCCCcee-E--eecc-CCCCCCccceeecccceeEEEeeee---eecc-Cee---------eeeeccccCccccE
Q 025649          106 VVDVINIESELN-I--SRSK-STTKPLKGSQSTSKVNIRDAEMEIL---DQSG-GKR---------LHLDYSVGGHTAAA  168 (250)
Q Consensus       106 ~i~~~d~~~~~~-~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~---------~~~~~~~~~h~~~v  168 (250)
                       +.+++.+.+.. .  .... .......+.....|+|.+.+.....   +... ...         ....+.+..+-..-
T Consensus        87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~  165 (307)
T COG3386          87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP  165 (307)
T ss_pred             -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence             56666654443 1  1111 1222456678889999888853331   1111 111         11112222333445


Q ss_pred             EEEEeecCCCCCcEEEEe-eCCCeEEEEecCC--CcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCc-eE
Q 025649          169 SCVAFSMFGERGKYLISG-GNDKLVKVWDCSR--FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK-VV  244 (250)
Q Consensus       169 ~~~~~~p~~~~~~~l~s~-~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i  244 (250)
                      +.++||   |+++.|..+ +..+.|.-|++..  +....    ...........+..-.++... +|.+.+++-.+| .|
T Consensus       166 NGla~S---pDg~tly~aDT~~~~i~r~~~d~~~g~~~~----~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v  237 (307)
T COG3386         166 NGLAFS---PDGKTLYVADTPANRIHRYDLDPATGPIGG----RRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRV  237 (307)
T ss_pred             CceEEC---CCCCEEEEEeCCCCeEEEEecCcccCccCC----cceEEEccCCCCCCCceEEeC-CCCEEEecccCCceE
Confidence            789999   898766655 4458888888763  11100    011112222344555666654 666554444443 67


Q ss_pred             EEEe
Q 025649          245 KVYS  248 (250)
Q Consensus       245 ~vw~  248 (250)
                      .+|+
T Consensus       238 ~~~~  241 (307)
T COG3386         238 VRFN  241 (307)
T ss_pred             EEEC
Confidence            6665

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.44  E-value=1.5  Score=32.63  Aligned_cols=116  Identities=10%  Similarity=0.004  Sum_probs=70.5

Q ss_pred             cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCe-EEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649            9 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK-LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD   87 (250)
Q Consensus         9 ~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   87 (250)
                      .||++..+.  -...-..|+|+|..+.-++.+-.-|+ ..++|....+...++....           ..-.--.-.|+|
T Consensus        57 aGk~v~~~~--lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~-----------~RHfyGHGvfs~  123 (366)
T COG3490          57 AGKIVFATA--LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQE-----------GRHFYGHGVFSP  123 (366)
T ss_pred             CCceeeeee--cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEeccc-----------CceeecccccCC
Confidence            344444433  23344567788877645555555554 4678887776665554220           001111235676


Q ss_pred             CcccCCCCCEEEEEeCC-----CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE
Q 025649           88 ADMLDKTNKICVVAKGD-----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE  143 (250)
Q Consensus        88 ~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (250)
                            +|.+|...-.|     |.|-+||.+.+....-......-....+.+.+||+.++.
T Consensus       124 ------dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvv  178 (366)
T COG3490         124 ------DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVV  178 (366)
T ss_pred             ------CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEE
Confidence                  99999887544     789999999655443333333456678899999999984

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.44  E-value=2.8  Score=35.73  Aligned_cols=140  Identities=13%  Similarity=0.155  Sum_probs=76.9

Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE-eeccCCCCCCccceeecccceeEEEeeeeeeccCeee
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL  155 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (250)
                      +-.|+.|.+...    .+...|+.+..||.|.+|.++.-... .............+                     ..
T Consensus       100 PHtIN~i~v~~l----g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~---------------------~i  154 (717)
T PF08728_consen  100 PHTINFIKVGDL----GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRL---------------------KI  154 (717)
T ss_pred             CceeeEEEeccc----CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccc---------------------cC
Confidence            344555544431    25678899999999999988641100 00000000000001                     11


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC--CC
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE--SE  233 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~  233 (250)
                      ++...+.. ...+++++++-. ...+++|.++....|.||-.......      ........|...|.+++|.+.+  +.
T Consensus       155 ~P~f~~~v-~~SaWGLdIh~~-~~~rlIAVSsNs~~VTVFaf~l~~~r------~~~~~s~~~~hNIP~VSFl~~~~d~~  226 (717)
T PF08728_consen  155 KPFFHLRV-GASAWGLDIHDY-KKSRLIAVSSNSQEVTVFAFALVDER------FYHVPSHQHSHNIPNVSFLDDDLDPN  226 (717)
T ss_pred             CCCeEeec-CCceeEEEEEec-CcceEEEEecCCceEEEEEEeccccc------cccccccccccCCCeeEeecCCCCCc
Confidence            11122222 236788888511 24578888888888888865553111      1111122366678889888633  22


Q ss_pred             ---eEEEeeCCceEEEEeC
Q 025649          234 ---NLVVCDTSKVVKVYSI  249 (250)
Q Consensus       234 ---~l~s~~~d~~i~vw~~  249 (250)
                         .+++++-.|.+.+|++
T Consensus       227 G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  227 GHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cceEEEEEeccCcEEEEEE
Confidence               6778999999999876

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.39  E-value=2.2  Score=34.69  Aligned_cols=38  Identities=11%  Similarity=0.080  Sum_probs=27.0

Q ss_pred             ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649          166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV  203 (250)
Q Consensus       166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~  203 (250)
                      -.+..++|+|.+-....|..-+.|..||+||+.....+
T Consensus       166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence            34678899953222467777778999999999876543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.23  E-value=0.77  Score=36.40  Aligned_cols=38  Identities=13%  Similarity=0.100  Sum_probs=30.9

Q ss_pred             ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649          161 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  201 (250)
Q Consensus       161 ~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~  201 (250)
                      +......+.++..+   |++++.++...=|+|.++|+.++.
T Consensus       303 l~D~~R~~~~i~~s---P~~~laA~tDslGRV~LiD~~~~~  340 (415)
T PF14655_consen  303 LPDSKREGESICLS---PSGRLAAVTDSLGRVLLIDVARGI  340 (415)
T ss_pred             eccCCceEEEEEEC---CCCCEEEEEcCCCcEEEEECCCCh
Confidence            34445568899999   889998888778999999999873

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.21  E-value=0.48  Score=41.73  Aligned_cols=71  Identities=7%  Similarity=0.020  Sum_probs=49.6

Q ss_pred             ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649          166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK  245 (250)
Q Consensus       166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  245 (250)
                      ....++.|+|.-|.  ..+....|+.|++..+.....         ...........++++|+| .|..++.|-..|++.
T Consensus       156 vf~~~~~wnP~vp~--n~av~l~dlsl~V~~~~~~~~---------~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~v  223 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPL--NSAVDLSDLSLRVKSTKQLAQ---------NVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEV  223 (1405)
T ss_pred             cccccccccCCccc--hhhhhccccchhhhhhhhhhh---------hhcccCcccceeeEEecc-ccceeeEecCCCeEE
Confidence            34567888854332  355566799999988776421         112234556789999998 788899999999987


Q ss_pred             EEe
Q 025649          246 VYS  248 (250)
Q Consensus       246 vw~  248 (250)
                      -|.
T Consensus       224 Qy~  226 (1405)
T KOG3630|consen  224 QYE  226 (1405)
T ss_pred             Eee
Confidence            764

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.10  E-value=0.12  Score=44.06  Aligned_cols=136  Identities=14%  Similarity=0.107  Sum_probs=74.0

Q ss_pred             eccCCCCCeeeEEEcCCC-CeEEEEecCCCeEEEEEcc--CCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649           16 LRAGHSSICSSVQFIPWK-PWEVISGGLDSKLVMWDFS--KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD   92 (250)
Q Consensus        16 l~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   92 (250)
                      ++ |..+.|-.+.|-... + .+.  -.-|.+.+||+.  .|+....+......     .   ....+.-+.|.|...  
T Consensus       128 ~k-gf~G~v~dl~fah~~~p-k~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~-----p---~gs~~~~V~wcp~~~--  193 (1283)
T KOG1916|consen  128 AK-GFPGGVGDLQFAHTKCP-KGR--RLVGELFVYDVDVLQGEIQPQLEVTPIT-----P---YGSDPQLVSWCPIAV--  193 (1283)
T ss_pred             Hh-cCCCCcccccccccCCh-HHH--HHhhhhheeehHhhccccccceEEeecC-----c---CCCCcceeeeccccc--
Confidence            45 677788888885432 2 232  334788999976  35444333322000     0   011224455555332  


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEE
Q 025649           93 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA  172 (250)
Q Consensus        93 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  172 (250)
                       +.-++..+-.++.+++........ ..+.. +...+..+++-..|-..                          +..  
T Consensus       194 -~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs-Hs~~~~d~a~~~~g~~~--------------------------l~~--  242 (1283)
T KOG1916|consen  194 -NKVYICYGLKGGEIRLLNINRALR-SLFRS-HSQRVTDMAFFAEGVLK--------------------------LAS--  242 (1283)
T ss_pred             -ccceeeeccCCCceeEeeechHHH-HHHHh-cCCCcccHHHHhhchhh--------------------------hee--
Confidence             556777777888998877764322 11111 22222222222222111                          111  


Q ss_pred             eecCCCCCcEEEEeeCCCeEEEEecCC
Q 025649          173 FSMFGERGKYLISGGNDKLVKVWDCSR  199 (250)
Q Consensus       173 ~~p~~~~~~~l~s~~~d~~i~iwd~~~  199 (250)
                      .|   |||..++.++.||.+++|.+.-
T Consensus       243 lS---pDGtv~a~a~~dG~v~f~Qiyi  266 (1283)
T KOG1916|consen  243 LS---PDGTVFAWAISDGSVGFYQIYI  266 (1283)
T ss_pred             eC---CCCcEEEEeecCCccceeeeee
Confidence            57   8999999999999999997653

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.06  E-value=3.5  Score=35.48  Aligned_cols=86  Identities=10%  Similarity=0.029  Sum_probs=52.9

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-C--------CC---ccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-G--------RP---NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD   89 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~--------~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (250)
                      -.|..|.++|+|. +|+..|..|.+.+.=.+. |        +.   .+++..+.     ..-.......|..+.|+|..
T Consensus        85 f~v~~i~~n~~g~-~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~-----~~~~~~~~~~i~qv~WhP~s  158 (717)
T PF10168_consen   85 FEVHQISLNPTGS-LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDE-----RFFTSNSSLEIKQVRWHPWS  158 (717)
T ss_pred             eeEEEEEECCCCC-EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEech-----hhccCCCCceEEEEEEcCCC
Confidence            3688899999999 777777765544432221 1        11   11111110     00011134578899999932


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCce
Q 025649           90 MLDKTNKICVVAKGDGVVDVINIESEL  116 (250)
Q Consensus        90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~  116 (250)
                      .   ++..|++-..|+++|+||+...+
T Consensus       159 ~---~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  159 E---SDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             C---CCCeEEEEecCCEEEEEecCCCC
Confidence            2   57889999999999999997644

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.04  E-value=2  Score=32.46  Aligned_cols=175  Identities=10%  Similarity=0.084  Sum_probs=83.8

Q ss_pred             CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE-EEEeCCCeEEEEeCCCceeEeecc
Q 025649           44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSK  122 (250)
Q Consensus        44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~  122 (250)
                      -.|.+||+.+++.++++.++.....       ....+..+.+....-. .+..++ ++=+..+.|.++|+.+++......
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~-------~~s~lndl~VD~~~~~-~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~  105 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAP-------PDSFLNDLVVDVRDGN-CDDGFAYITDSGGPGLIVYDLATGKSWRVLH  105 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS--------TCGGEEEEEEECTTTT-S-SEEEEEEETTTCEEEEEETTTTEEEEEET
T ss_pred             cEEEEEECCCCcEEEEEECChHHcc-------cccccceEEEEccCCC-CcceEEEEeCCCcCcEEEEEccCCcEEEEec
Confidence            3789999999999998886622111       2345666666531000 011344 333455789999999987655443


Q ss_pred             CCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC---
Q 025649          123 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR---  199 (250)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~---  199 (250)
                      ..       ....|+...+. .      ....    ...   ...+..++.+|..++++.|.-+...+ -++|-+.+   
T Consensus       106 ~~-------~~~~p~~~~~~-i------~g~~----~~~---~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L  163 (287)
T PF03022_consen  106 NS-------FSPDPDAGPFT-I------GGES----FQW---PDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVL  163 (287)
T ss_dssp             CG-------CTTS-SSEEEE-E------TTEE----EEE---TTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHH
T ss_pred             CC-------cceecccccee-c------cCce----Eec---CCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHh
Confidence            32       11112111111 0      0000    111   12388888887667777777655432 12333222   


Q ss_pred             --CcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          200 --FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       200 --~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                        ............+..+.........++..+ +|.++++--..+.|..|+.
T Consensus       164 ~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~  214 (287)
T PF03022_consen  164 RDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDP  214 (287)
T ss_dssp             CSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCCTEEEEEET
T ss_pred             hCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCCCeEEEEeC
Confidence              111100000011111111123455667776 7877777778888999985

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.86  E-value=0.71  Score=33.19  Aligned_cols=81  Identities=9%  Similarity=0.027  Sum_probs=49.0

Q ss_pred             EcCCCCeEEEEecCCCeEEEEEccCCCCccce-ecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeE
Q 025649           29 FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIV-NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV  107 (250)
Q Consensus        29 ~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i  107 (250)
                      +..++. +|++.+.+|.+++||+.+++.+..- ....--.............|..+.++.      +|.-+++-+ +|..
T Consensus        18 l~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~------~G~PiV~ls-ng~~   89 (219)
T PF07569_consen   18 LECNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS------NGVPIVTLS-NGDS   89 (219)
T ss_pred             EEeCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC------CCCEEEEEe-CCCE
Confidence            334566 7999999999999999987654322 100000000000002345678888886      787776654 5788


Q ss_pred             EEEeCCCcee
Q 025649          108 DVINIESELN  117 (250)
Q Consensus       108 ~~~d~~~~~~  117 (250)
                      ..|+..-+..
T Consensus        90 y~y~~~L~~W   99 (219)
T PF07569_consen   90 YSYSPDLGCW   99 (219)
T ss_pred             EEecccccee
Confidence            9998875443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.70  E-value=1.8  Score=38.96  Aligned_cols=164  Identities=12%  Similarity=0.053  Sum_probs=84.6

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEE--------cCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQF--------IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~--------~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~   73 (250)
                      +.+|+.+++.....+. +-...|..+..        -|.=+++|+. +.--.|.++-+.-.+.......-    .....+
T Consensus       101 L~lWny~~~~e~~~~d-~~shtIl~V~LvkPkpgvFv~~IqhlLvv-aT~~ei~ilgV~~~~~~~~~~~f----~~~~~i  174 (1311)
T KOG1900|consen  101 LFLWNYESDNELAEYD-GLSHTILKVGLVKPKPGVFVPEIQHLLVV-ATPVEIVILGVSFDEFTGELSIF----NTSFKI  174 (1311)
T ss_pred             EEEEEcCCCCcccccc-chhhhheeeeeecCCCCcchhhhheeEEe-cccceEEEEEEEeccccCccccc----ccceee
Confidence            6799999877777887 77776776663        2333433433 33445666654322111000000    000111


Q ss_pred             ccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCe
Q 025649           74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK  153 (250)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (250)
                      ......|.++....      +|+++++| .||  .+|.+.-......+..    ...  .+++....+.       ...+
T Consensus       175 ~~dg~~V~~I~~t~------nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~----rc~--Kiclt~s~ls-------~lvP  232 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTE------NGRIFFAG-RDG--NLYELVYQAEDGWFGS----RCR--KICLTKSVLS-------SLVP  232 (1311)
T ss_pred             ecCCceEEEEEecc------CCcEEEee-cCC--CEEEEEEeccCchhhc----ccc--cccCchhHHH-------Hhhh
Confidence            12345678888554      77777666 555  4555432110000000    000  0000000000       0001


Q ss_pred             eeeeeccc-cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC
Q 025649          154 RLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  199 (250)
Q Consensus       154 ~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~  199 (250)
                      .   +..+ ..+..+|..++..   .....+.+-++.|+|.+||+..
T Consensus       233 s---~~~~~~~~~dpI~qi~ID---~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  233 S---LLSVPGSSKDPIRQITID---NSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             h---hhcCCCCCCCcceeeEec---cccceeeeeccCceEEEEEccC
Confidence            1   1223 3677899999998   6777888999999999999987

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.66  E-value=3.5  Score=34.06  Aligned_cols=129  Identities=10%  Similarity=0.034  Sum_probs=67.1

Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeee
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL  155 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (250)
                      .-+.|+++.|.|....  +.-.+++.-..+.|.+|.+......                  .++.+.         ....
T Consensus        55 qFEhV~GlsW~P~~~~--~~paLLAVQHkkhVtVWqL~~s~~e------------------~~K~l~---------sQtc  105 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTA--DTPALLAVQHKKHVTVWQLCPSTTE------------------RNKLLM---------SQTC  105 (671)
T ss_pred             ccceeeeeeecCcccC--CCCceEEEeccceEEEEEeccCccc------------------ccccee---------eeee
Confidence            3457999999984321  2224444456689999988631100                  011111         0011


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                      +....+....   ..+.|+   |....|+.-.....=.+++++...        ..+..-..-.+.|.+.+|.. ||+.|
T Consensus       106 Ei~e~~pvLp---QGCVWH---Pk~~iL~VLT~~dvSV~~sV~~d~--------srVkaDi~~~G~IhCACWT~-DG~RL  170 (671)
T PF15390_consen  106 EIREPFPVLP---QGCVWH---PKKAILTVLTARDVSVLPSVHCDS--------SRVKADIKTSGLIHCACWTK-DGQRL  170 (671)
T ss_pred             eccCCcccCC---Cccccc---CCCceEEEEecCceeEeeeeeeCC--------ceEEEeccCCceEEEEEecC-cCCEE
Confidence            1111122111   245677   666666554444344455555432        33334445567799999997 77776


Q ss_pred             EEe-eCCceEEEEe
Q 025649          236 VVC-DTSKVVKVYS  248 (250)
Q Consensus       236 ~s~-~~d~~i~vw~  248 (250)
                      +.+ +..=.-++||
T Consensus       171 VVAvGSsLHSyiWd  184 (671)
T PF15390_consen  171 VVAVGSSLHSYIWD  184 (671)
T ss_pred             EEEeCCeEEEEEec
Confidence            654 3334567776

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.47  E-value=3.5  Score=33.55  Aligned_cols=80  Identities=15%  Similarity=0.120  Sum_probs=46.0

Q ss_pred             cEEEEEeecCCCCCcEEEEeeCCCeEEEEecC---------CCcceecc---cccceeeeeeccCCceeEEEecCCC--C
Q 025649          167 AASCVAFSMFGERGKYLISGGNDKLVKVWDCS---------RFQGVQTS---INNDLLIKNINLNKKVNWLCTTPTE--S  232 (250)
Q Consensus       167 ~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~---------~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~--~  232 (250)
                      .|..+..+   +.|..++-.+.+|.+.++=.+         .++..-..   +-...+ ......-.+..++|+|..  .
T Consensus       105 eV~~vl~s---~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~-ftss~~ltl~Qa~WHP~S~~D  180 (741)
T KOG4460|consen  105 EVYQVLLS---PTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERF-FTSSTSLTLKQAAWHPSSILD  180 (741)
T ss_pred             EEEEEEec---CCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccccee-eccCCceeeeeccccCCccCC
Confidence            56777788   788888888878866554311         11111000   000110 111122246777999843  3


Q ss_pred             CeEEEeeCCceEEEEeCC
Q 025649          233 ENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       233 ~~l~s~~~d~~i~vw~~~  250 (250)
                      ..+..-+.|..|++||++
T Consensus       181 ~hL~iL~sdnviRiy~lS  198 (741)
T KOG4460|consen  181 PHLVLLTSDNVIRIYSLS  198 (741)
T ss_pred             ceEEEEecCcEEEEEecC
Confidence            567777789999999974

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.43  E-value=1.7  Score=29.90  Aligned_cols=36  Identities=11%  Similarity=0.072  Sum_probs=29.3

Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCC
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  114 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~  114 (250)
                      .+.+++|||...-...+-+|++...++.|.+|....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            788999999655444567899999999999998774

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.27  E-value=3.4  Score=35.27  Aligned_cols=131  Identities=9%  Similarity=-0.083  Sum_probs=73.1

Q ss_pred             eeeEEEcCCC-CeEEEEecCCCeEEEEEccCCC-CccceecCCC-----CCCCCCCcccCCCceeEEecC--CCcccCCC
Q 025649           24 CSSVQFIPWK-PWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLP-----ENNGNAGQCYNPAFVHAIAIP--DADMLDKT   94 (250)
Q Consensus        24 v~~l~~~~~~-~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~   94 (250)
                      |+.|....-| ...|+.|.+||.|.+|.+++-. .+........     ....+.-.......+++++++  .      .
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~------~  176 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK------K  176 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC------c
Confidence            5555544322 2389999999999999874210 0000000000     000011111234567888887  5      6


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEee
Q 025649           95 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS  174 (250)
Q Consensus        95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  174 (250)
                      .++||+++....|.||-........    .                                .... ..|...|.+|.|-
T Consensus       177 ~rlIAVSsNs~~VTVFaf~l~~~r~----~--------------------------------~~~s-~~~~hNIP~VSFl  219 (717)
T PF08728_consen  177 SRLIAVSSNSQEVTVFAFALVDERF----Y--------------------------------HVPS-HQHSHNIPNVSFL  219 (717)
T ss_pred             ceEEEEecCCceEEEEEEecccccc----c--------------------------------cccc-cccccCCCeeEee
Confidence            7888888888888887654321000    0                                0000 1155678899997


Q ss_pred             cCC--CCCc-EEEEeeCCCeEEEEec
Q 025649          175 MFG--ERGK-YLISGGNDKLVKVWDC  197 (250)
Q Consensus       175 p~~--~~~~-~l~s~~~d~~i~iwd~  197 (250)
                      +..  +.|. .+++++-.|.+.+|++
T Consensus       220 ~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  220 DDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cCCCCCccceEEEEEeccCcEEEEEE
Confidence            432  2232 7778888999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PHA02790 Kelch-like protein; Provisional

Probab=93.21  E-value=4  Score=33.42  Aligned_cols=26  Identities=12%  Similarity=0.032  Sum_probs=17.9

Q ss_pred             CCCEEEEEeCC---CeEEEEeCCCceeEe
Q 025649           94 TNKICVVAKGD---GVVDVINIESELNIS  119 (250)
Q Consensus        94 ~~~~l~~~~~d---~~i~~~d~~~~~~~~  119 (250)
                      ++++.+.|+.+   ..+..||.++++...
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~  390 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQF  390 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEe
Confidence            67777887754   347788988766544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.09  E-value=0.083  Score=44.98  Aligned_cols=75  Identities=11%  Similarity=0.091  Sum_probs=53.5

Q ss_pred             cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec----------CCCCCe
Q 025649          165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT----------PTESEN  234 (250)
Q Consensus       165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------~~~~~~  234 (250)
                      ...+.-|.|.|+.++.-++..+-.++.|++-......          ...+.+|+..+..+++.          ++||..
T Consensus       180 gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv  249 (1283)
T KOG1916|consen  180 GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL----------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTV  249 (1283)
T ss_pred             CCCcceeeecccccccceeeeccCCCceeEeeechHH----------HHHHHhcCCCcccHHHHhhchhhheeeCCCCcE
Confidence            3445677888877887788888888888887776632          12334576666555432          249999


Q ss_pred             EEEeeCCceEEEEeC
Q 025649          235 LVVCDTSKVVKVYSI  249 (250)
Q Consensus       235 l~s~~~d~~i~vw~~  249 (250)
                      |+.++.||.++.|.+
T Consensus       250 ~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  250 FAWAISDGSVGFYQI  264 (1283)
T ss_pred             EEEeecCCccceeee
Confidence            999999999999975

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.89  E-value=3.3  Score=31.50  Aligned_cols=152  Identities=12%  Similarity=-0.007  Sum_probs=74.1

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      .-.+.+..+..+++|+ ++++++.-..+.-||.-...- ......            ....|.+|.|.|      ++.+.
T Consensus       142 ~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~~w-~~~~r~------------~~~riq~~gf~~------~~~lw  201 (302)
T PF14870_consen  142 ETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQTTW-QPHNRN------------SSRRIQSMGFSP------DGNLW  201 (302)
T ss_dssp             S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS--EEEE--------------SSS-EEEEEE-T------TS-EE
T ss_pred             CCcceeEeEEECCCCc-EEEEECcccEEEEecCCCccc-eEEccC------------ccceehhceecC------CCCEE
Confidence            3456788888999998 787777766667787532111 111111            357899999998      87776


Q ss_pred             EEEeCCCeEEEEeCCC-ceeEee--ccC-CCCCCccceeecccceeEEEeeeeeec---c-CeeeeeeccccCccccEEE
Q 025649           99 VVAKGDGVVDVINIES-ELNISR--SKS-TTKPLKGSQSTSKVNIRDAEMEILDQS---G-GKRLHLDYSVGGHTAAASC  170 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~-~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~h~~~v~~  170 (250)
                      +.+ ..|.|++=+... ...-..  ... .....+..+++.+++...+..+.-...   + .+.-+.......-....+.
T Consensus       202 ~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~  280 (302)
T PF14870_consen  202 MLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYR  280 (302)
T ss_dssp             EEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---E
T ss_pred             EEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEE
Confidence            655 889999888322 222111  111 122347888999888777742221111   1 2222222222333456788


Q ss_pred             EEeecCCCCCcEEEEeeCCCeEEEE
Q 025649          171 VAFSMFGERGKYLISGGNDKLVKVW  195 (250)
Q Consensus       171 ~~~~p~~~~~~~l~s~~~d~~i~iw  195 (250)
                      +.|.   +..+-++.| .+|.|--|
T Consensus       281 i~f~---~~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  281 IVFV---NPDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             EEEE---ETTEEEEE--STTEEEEE
T ss_pred             EEEc---CCCceEEEC-CCcEEEEe
Confidence            8987   444555555 57766544

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.83  E-value=3.4  Score=31.94  Aligned_cols=111  Identities=11%  Similarity=-0.050  Sum_probs=55.7

Q ss_pred             eeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC
Q 025649           24 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG  103 (250)
Q Consensus        24 v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~  103 (250)
                      -..|+|.|+|+ +|++ ...|.|++++ ..+.....+..-      .............++++|.-   ....+|.+...
T Consensus         4 P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~~v~~~------~~v~~~~~~gllgia~~p~f---~~n~~lYv~~t   71 (331)
T PF07995_consen    4 PRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKTPVADL------PEVFADGERGLLGIAFHPDF---ASNGYLYVYYT   71 (331)
T ss_dssp             EEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECEEEEE-------TTTBTSTTBSEEEEEE-TTC---CCC-EEEEEEE
T ss_pred             ceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcceeccc------ccccccccCCcccceecccc---CCCCEEEEEEE
Confidence            46899999997 6655 5599999999 334331111100      00112234567888998811   12334433332


Q ss_pred             -C--------CeEEEEeCCCc-------eeEe-eccC--CCCCCccceeecccceeEEEeee
Q 025649          104 -D--------GVVDVINIESE-------LNIS-RSKS--TTKPLKGSQSTSKVNIRDAEMEI  146 (250)
Q Consensus       104 -d--------~~i~~~d~~~~-------~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~  146 (250)
                       .        ..|.-|....+       +.+. ....  .....-..+.|.|||.+++++|.
T Consensus        72 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   72 NADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             cccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence             1        23444444332       1111 1111  12345566999999987776554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=92.57  E-value=6.9  Score=34.49  Aligned_cols=105  Identities=13%  Similarity=0.035  Sum_probs=61.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeeccc--cee---EEEeeeeeeccCe-----eee--eeccc
Q 025649           94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV--NIR---DAEMEILDQSGGK-----RLH--LDYSV  161 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~-----~~~--~~~~~  161 (250)
                      +...++.++.++.+...++..+......+......+.|+.++|-  ++.   ++.+|.|+.....     ...  +...+
T Consensus       498 n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l  577 (1096)
T KOG1897|consen  498 NASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL  577 (1096)
T ss_pred             cceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc
Confidence            56677777777877777777655333333334478899999874  333   5558888765421     111  11112


Q ss_pred             cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC
Q 025649          162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  199 (250)
Q Consensus       162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~  199 (250)
                      .+ .....++-+..+..+..+|.++..||.+..|-+..
T Consensus       578 ~~-~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~  614 (1096)
T KOG1897|consen  578 SG-EIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI  614 (1096)
T ss_pred             CC-CccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence            22 11223333332225678999999999988775544

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.44  E-value=4.7  Score=32.28  Aligned_cols=103  Identities=16%  Similarity=0.138  Sum_probs=65.2

Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeee
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL  155 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (250)
                      ..++|.++.|++      |++.+|+--.+++|.+++....+....                                   
T Consensus        65 d~G~I~SIkFSl------DnkilAVQR~~~~v~f~nf~~d~~~l~-----------------------------------  103 (657)
T KOG2377|consen   65 DKGEIKSIKFSL------DNKILAVQRTSKTVDFCNFIPDNSQLE-----------------------------------  103 (657)
T ss_pred             CCCceeEEEecc------CcceEEEEecCceEEEEecCCCchhhH-----------------------------------
Confidence            457899999999      999999999999999998753221111                                   


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  234 (250)
                       ...+.+.....|....|+   .+ .-+|--+. .-+-+|-.....        ..++....|.-.|++-+|.+ +-..
T Consensus       104 -~~~~ck~k~~~IlGF~W~---~s-~e~A~i~~-~G~e~y~v~pek--------rslRlVks~~~nvnWy~yc~-et~v  167 (657)
T KOG2377|consen  104 -YTQECKTKNANILGFCWT---SS-TEIAFITD-QGIEFYQVLPEK--------RSLRLVKSHNLNVNWYMYCP-ETAV  167 (657)
T ss_pred             -HHHHhccCcceeEEEEEe---cC-eeEEEEec-CCeEEEEEchhh--------hhhhhhhhcccCccEEEEcc-ccce
Confidence             112233344557777777   43 44444442 335566554432        33445567778888888887 4443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.28  E-value=3.5  Score=30.45  Aligned_cols=147  Identities=12%  Similarity=-0.083  Sum_probs=75.5

Q ss_pred             ceeEEecCCCcccCCCCCEEEEEe---CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee------
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAK---GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ------  149 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  149 (250)
                      .+.+.++++      +++.++...   ....+.++....  ......  ....+...+|++++...........      
T Consensus        25 ~~~s~AvS~------dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~   94 (253)
T PF10647_consen   25 DVTSPAVSP------DGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRD   94 (253)
T ss_pred             cccceEECC------CCCeEEEEEEcCCCCEEEEEcCCC--cceeec--cCCccccccccCCCCEEEEEcCCCceEEEEe
Confidence            577889998      888776655   334455554433  222221  2246777888888766653111000      


Q ss_pred             -ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEee---CCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649          150 -SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL  225 (250)
Q Consensus       150 -~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (250)
                       .........-....-...|..+.+|   |+|..++.-.   .++.|.+=-+.....-....-.............+..+
T Consensus        95 ~~~g~~~~~~v~~~~~~~~I~~l~vS---pDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v  171 (253)
T PF10647_consen   95 SASGTGEPVEVDWPGLRGRITALRVS---PDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDV  171 (253)
T ss_pred             cCCCcceeEEecccccCCceEEEEEC---CCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceee
Confidence             0011000001111111289999999   8998877654   35677776544221110000001222222345678999


Q ss_pred             EecCCCCCeEEEee
Q 025649          226 CTTPTESENLVVCD  239 (250)
Q Consensus       226 ~~~~~~~~~l~s~~  239 (250)
                      .|.+ ++.+++.+.
T Consensus       172 ~W~~-~~~L~V~~~  184 (253)
T PF10647_consen  172 AWSD-DSTLVVLGR  184 (253)
T ss_pred             eecC-CCEEEEEeC
Confidence            9997 666555544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.21  E-value=0.74  Score=22.46  Aligned_cols=30  Identities=7%  Similarity=0.075  Sum_probs=20.5

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCC--CeEEEE
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLD--SKLVMW   49 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~d--g~v~iw   49 (250)
                      ....-....|+|||+.++.++..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            455677889999999666666666  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.47  E-value=4.1  Score=29.52  Aligned_cols=51  Identities=16%  Similarity=0.122  Sum_probs=39.7

Q ss_pred             CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE
Q 025649          178 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV  237 (250)
Q Consensus       178 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  237 (250)
                      .+|++.++.-..++|...|..++         +++..+.-....+++++|--++-..|++
T Consensus       221 ~eG~L~Va~~ng~~V~~~dp~tG---------K~L~eiklPt~qitsccFgGkn~d~~yv  271 (310)
T KOG4499|consen  221 TEGNLYVATFNGGTVQKVDPTTG---------KILLEIKLPTPQITSCCFGGKNLDILYV  271 (310)
T ss_pred             cCCcEEEEEecCcEEEEECCCCC---------cEEEEEEcCCCceEEEEecCCCccEEEE
Confidence            67888888888999999999999         6666666678889999987543344443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.12  E-value=9  Score=32.78  Aligned_cols=79  Identities=9%  Similarity=0.033  Sum_probs=48.7

Q ss_pred             CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe--e
Q 025649           43 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS--R  120 (250)
Q Consensus        43 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~  120 (250)
                      -..|+|+++ +|+.+..+...             ...+-.+.|+       +...|++...+|++++|++-......  .
T Consensus        63 ~~~I~If~~-sG~lL~~~~w~-------------~~~lI~mgWs-------~~eeLI~v~k~g~v~Vy~~~ge~ie~~sv  121 (829)
T KOG2280|consen   63 RPYIRIFNI-SGQLLGRILWK-------------HGELIGMGWS-------DDEELICVQKDGTVHVYGLLGEFIESNSV  121 (829)
T ss_pred             ceeEEEEec-cccchHHHHhc-------------CCCeeeeccc-------CCceEEEEeccceEEEeecchhhhccccc
Confidence            346888888 47777666533             3367889999       46677777899999999997644332  1


Q ss_pred             ccCCCCCCccceeecccceeEE
Q 025649          121 SKSTTKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~  142 (250)
                      ........|....+..+|-.+.
T Consensus       122 g~e~~~~~I~ec~~f~~GVavl  143 (829)
T KOG2280|consen  122 GFESQMSDIVECRFFHNGVAVL  143 (829)
T ss_pred             ccccccCceeEEEEecCceEEE
Confidence            1122223344444444555544

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.02  E-value=0.71  Score=40.78  Aligned_cols=102  Identities=10%  Similarity=-0.089  Sum_probs=70.3

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  100 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  100 (250)
                      ....++.|+|.-....+.+..|+.|++..+..- ..+..+.              .....++++|+|      .|+.++.
T Consensus       156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p--------------~t~~~Tav~WSp------rGKQl~i  215 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP--------------VTNSQTAVLWSP------RGKQLFI  215 (1405)
T ss_pred             cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC--------------cccceeeEEecc------ccceeeE
Confidence            345688899987656788888999998876532 2223333              235679999999      9999999


Q ss_pred             EeCCCeEEEEeCCCc--eeEeeccCCCCCCccceeecccceeEEE
Q 025649          101 AKGDGVVDVINIESE--LNISRSKSTTKPLKGSQSTSKVNIRDAE  143 (250)
Q Consensus       101 ~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (250)
                      |-..|++.=|...-.  ..+......+...+.++.|-....+++.
T Consensus       216 G~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  216 GRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             ecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            999999988876532  2222222222467888888777776664

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=90.81  E-value=3.9  Score=33.79  Aligned_cols=108  Identities=11%  Similarity=0.113  Sum_probs=68.1

Q ss_pred             CCCCCeeeEEEcCCC----CeEEEEecCCCeEEEEEccC-----CCCccc--eecCCCCCCCCCCcccCCCceeEEecCC
Q 025649           19 GHSSICSSVQFIPWK----PWEVISGGLDSKLVMWDFSK-----GRPNKI--VNFGLPENNGNAGQCYNPAFVHAIAIPD   87 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~----~~~l~s~s~dg~v~iwd~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~   87 (250)
                      |.-..|..+.|.|-+    + -|++......|.+|-+.-     ++.+..  -....       .   .+---.+..|+|
T Consensus        54 GqFEhV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e-------~---~pvLpQGCVWHP  122 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE-------P---FPVLPQGCVWHP  122 (671)
T ss_pred             eccceeeeeeecCcccCCCC-ceEEEeccceEEEEEeccCccccccceeeeeeeccC-------C---cccCCCcccccC
Confidence            344578999999863    4 455566678999999852     221111  11000       0   111224566777


Q ss_pred             CcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE
Q 025649           88 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE  143 (250)
Q Consensus        88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (250)
                            ....|++-.....-.+++++.............+.|.|..|.+||+.++.
T Consensus       123 ------k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV  172 (671)
T PF15390_consen  123 ------KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV  172 (671)
T ss_pred             ------CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence                  77888777666655677777655555545555689999999999988873

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.70  E-value=7.9  Score=31.40  Aligned_cols=120  Identities=8%  Similarity=-0.041  Sum_probs=62.2

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  100 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  100 (250)
                      -..-..|+|.|+++ +|++--..|.|++++..++.......+.  .    ............++++|.-.....+.+|..
T Consensus        29 L~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~--~----v~~~~ge~GLlglal~PdF~~~~~n~~lYv  101 (454)
T TIGR03606        29 LNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLP--E----IVNDAQHNGLLGLALHPDFMQEKGNPYVYI  101 (454)
T ss_pred             CCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCC--c----eeccCCCCceeeEEECCCccccCCCcEEEE
Confidence            34567999999997 6776655699999986554321111111  0    000002456788899872100012334444


Q ss_pred             Ee----------CCCeEEEEeCCCc-------eeEe-eccCCCCCCccceeecccceeEEEeeee
Q 025649          101 AK----------GDGVVDVINIESE-------LNIS-RSKSTTKPLKGSQSTSKVNIRDAEMEIL  147 (250)
Q Consensus       101 ~~----------~d~~i~~~d~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (250)
                      ..          ....|.-|.+...       +.+. .........-..+.|.|||.+++++|..
T Consensus       102 syt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       102 SYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             EEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence            42          1234545554321       1111 1111112345678899999888765543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.34  E-value=8.8  Score=31.37  Aligned_cols=131  Identities=12%  Similarity=0.140  Sum_probs=70.5

Q ss_pred             EEEcccceeeeeeccCCCCCeeeEEEcCCCC-------eEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCccc
Q 025649            4 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKP-------WEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         4 iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~-------~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      -.|++-|+.+.... -|...  -+.|.|+.+       ..|+--|.. .|.--|.+- |..+....              
T Consensus       494 kmDIErGkvveeW~-~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~-svFrIDPR~~gNKi~v~e--------------  555 (776)
T COG5167         494 KMDIERGKVVEEWD-LKDDV--VVQYNPYFKFQQMTDEQTLVGLSDY-SVFRIDPRARGNKIKVVE--------------  555 (776)
T ss_pred             eeecccceeeeEee-cCCcc--eeecCCchhHHhcCccceEEeeccc-ceEEecccccCCceeeee--------------
Confidence            34677788888877 56554  567777542       134444443 333335432 22222221              


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeee
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL  155 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (250)
                      ....++.-.|+..+-  ..+.++++++..|.|++||--....                                      
T Consensus       556 sKdY~tKn~Fss~~t--TesGyIa~as~kGDirLyDRig~rA--------------------------------------  595 (776)
T COG5167         556 SKDYKTKNKFSSGMT--TESGYIAAASRKGDIRLYDRIGKRA--------------------------------------  595 (776)
T ss_pred             ehhcccccccccccc--ccCceEEEecCCCceeeehhhcchh--------------------------------------
Confidence            112222222322111  2567999999999999999643110                                      


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecC
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  198 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~  198 (250)
                        ...+++-...|..+..+   .+|.++++.+ ...+.+-|++
T Consensus       596 --KtalP~lG~aIk~idvt---a~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         596 --KTALPGLGDAIKHIDVT---ANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             --hhcCcccccceeeeEee---cCCcEEEEee-cceEEEEecc
Confidence              11344455666677766   6777666655 3466666654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.34  E-value=6.3  Score=29.67  Aligned_cols=52  Identities=17%  Similarity=0.238  Sum_probs=38.8

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec------CCCeEEEEEccCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG------LDSKLVMWDFSKGR   55 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s------~dg~v~iwd~~~~~   55 (250)
                      |.+||..+.+-..--. +-.+.|++|.|..+.+ +++.|.      ....+..||+.+..
T Consensus        18 lC~yd~~~~qW~~~g~-~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~~   75 (281)
T PF12768_consen   18 LCLYDTDNSQWSSPGN-GISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQT   75 (281)
T ss_pred             EEEEECCCCEeecCCC-CceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCCe
Confidence            6789988777665555 6678999999996666 777764      45678889987653

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=90.33  E-value=9.5  Score=31.75  Aligned_cols=102  Identities=16%  Similarity=0.063  Sum_probs=59.0

Q ss_pred             cEEEEcccceeeeeeccCCCCCeee----------EEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSS----------VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNA   71 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~----------l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~   71 (250)
                      |.-.|.++|+.+.++...-...+..          +++.  +. .++.++.|+.|.-.|.++|+.+.......       
T Consensus        81 v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~-~v~v~t~dg~l~ALDa~TGk~~W~~~~~~-------  150 (527)
T TIGR03075        81 VYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DG-KVFFGTLDARLVALDAKTGKVVWSKKNGD-------  150 (527)
T ss_pred             EEEEECCCCceeeEecCCCCcccccccccccccccceEE--CC-EEEEEcCCCEEEEEECCCCCEEeeccccc-------
Confidence            4456778888887765111111111          1222  23 57778889999999999999887765331       


Q ss_pred             CcccCCCceeEEecCCCcccCCCCCEEEEEe------CCCeEEEEeCCCceeEeecc
Q 025649           72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAK------GDGVVDVINIESELNISRSK  122 (250)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~  122 (250)
                           ...-..+.-+|...   ++. ++++.      .+|.|.-+|.++|+.+....
T Consensus       151 -----~~~~~~~tssP~v~---~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       151 -----YKAGYTITAAPLVV---KGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             -----ccccccccCCcEEE---CCE-EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence                 00001122222211   344 44443      26899999999998876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.24  E-value=7.7  Score=30.53  Aligned_cols=18  Identities=11%  Similarity=-0.158  Sum_probs=13.3

Q ss_pred             CCeeeEEEcCCCCeEEEEe
Q 025649           22 SICSSVQFIPWKPWEVISG   40 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~   40 (250)
                      .....|+|.++|. ++++-
T Consensus        14 ~~P~~ia~d~~G~-l~V~e   31 (367)
T TIGR02604        14 RNPIAVCFDERGR-LWVAE   31 (367)
T ss_pred             CCCceeeECCCCC-EEEEe
Confidence            3456899999998 66654

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.19  E-value=0.56  Score=38.96  Aligned_cols=39  Identities=15%  Similarity=0.270  Sum_probs=28.5

Q ss_pred             CCeeeEEEcC----CCCeEEEEecCCCeEEEEEccCCCCcccee
Q 025649           22 SICSSVQFIP----WKPWEVISGGLDSKLVMWDFSKGRPNKIVN   61 (250)
Q Consensus        22 ~~v~~l~~~~----~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~   61 (250)
                      ..+..+++++    +.. +|++.+.|+++|+||+.+++++....
T Consensus       215 ~~~~~~~~~~~~~~~~~-~l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDT-FLFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             --EEEEEE-----ETTT-EEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             CccceEEEecceeCCCC-EEEEEeCCCeEEEEECCCCeEEEEec
Confidence            3455666666    445 89999999999999999999866654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.90  E-value=6.8  Score=29.44  Aligned_cols=122  Identities=12%  Similarity=0.156  Sum_probs=66.2

Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeee
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL  157 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (250)
                      ..+.++.|+|      +.+.|++......-.++=...|+.+..+..                                  
T Consensus        86 ~nvS~LTynp------~~rtLFav~n~p~~iVElt~~GdlirtiPL----------------------------------  125 (316)
T COG3204          86 ANVSSLTYNP------DTRTLFAVTNKPAAIVELTKEGDLIRTIPL----------------------------------  125 (316)
T ss_pred             ccccceeeCC------CcceEEEecCCCceEEEEecCCceEEEecc----------------------------------
Confidence            4588999998      777776666555555554444554433322                                  


Q ss_pred             eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-CCceeEEEecCCCCCeEE
Q 025649          158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLV  236 (250)
Q Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~  236 (250)
                          .+- .....++|.   .+|++.++-=.++.+.++.+............+..-....+ +..--.++|.|.++. |.
T Consensus       126 ----~g~-~DpE~Ieyi---g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~-l~  196 (316)
T COG3204         126 ----TGF-SDPETIEYI---GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR-LF  196 (316)
T ss_pred             ----ccc-CChhHeEEe---cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCce-EE
Confidence                221 123456676   56666666666778887776655332211111111111122 455677899885554 44


Q ss_pred             EeeCCceEEEEe
Q 025649          237 VCDTSKVVKVYS  248 (250)
Q Consensus       237 s~~~d~~i~vw~  248 (250)
                      .+-.-.-+.||.
T Consensus       197 ~aKEr~P~~I~~  208 (316)
T COG3204         197 VAKERNPIGIFE  208 (316)
T ss_pred             EEEccCCcEEEE
Confidence            444444566654

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=89.73  E-value=2.6  Score=30.88  Aligned_cols=87  Identities=13%  Similarity=0.119  Sum_probs=46.3

Q ss_pred             EEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC-C--CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL-D--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         3 ~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~-d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      .+||+.+++.. .+.....-...+=.+.++|+ +|.+|+. +  ..+++++..+......+...             ...
T Consensus        49 ~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~-ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~-------------~~~  113 (243)
T PF07250_consen   49 VEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGR-LLQTGGDNDGNKAIRIFTPCTSDGTCDWTES-------------PND  113 (243)
T ss_pred             EEEecCCCcEE-eccCCCCCcccCcCCCCCCC-EEEeCCCCccccceEEEecCCCCCCCCceEC-------------ccc
Confidence            47888877653 33312333444556789998 7888765 2  34777776431111111100             111


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCC
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGD  104 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d  104 (250)
                      ...-.|.|....-+||+.|+.|+.+
T Consensus       114 m~~~RWYpT~~~L~DG~vlIvGG~~  138 (243)
T PF07250_consen  114 MQSGRWYPTATTLPDGRVLIVGGSN  138 (243)
T ss_pred             ccCCCccccceECCCCCEEEEeCcC
Confidence            2222343333333489999999876

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=89.51  E-value=7.8  Score=29.54  Aligned_cols=150  Identities=10%  Similarity=0.008  Sum_probs=66.3

Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-----ee-ecc
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-----LD-QSG  151 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~  151 (250)
                      ..+..+..++      ++++++++..-....-||.-...-...... ....+..+.|+|++........     .+ ...
T Consensus       145 gs~~~~~r~~------dG~~vavs~~G~~~~s~~~G~~~w~~~~r~-~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  145 GSINDITRSS------DGRYVAVSSRGNFYSSWDPGQTTWQPHNRN-SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDD  217 (302)
T ss_dssp             --EEEEEE-T------TS-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTE
T ss_pred             ceeEeEEECC------CCcEEEEECcccEEEEecCCCccceEEccC-ccceehhceecCCCCEEEEeCCcEEEEccCCCC
Confidence            3455666666      899998887766667787654322222222 2378899999999877553211     11 001


Q ss_pred             Ceee-eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCC
Q 025649          152 GKRL-HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT  230 (250)
Q Consensus       152 ~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  230 (250)
                      .... +.+..+..-.-.+..++|.   +++...++|+ .|.+.. ....++.=+      .......-....+.+.|.+ 
T Consensus       218 ~~~w~~~~~~~~~~~~~~ld~a~~---~~~~~wa~gg-~G~l~~-S~DgGktW~------~~~~~~~~~~n~~~i~f~~-  285 (302)
T PF14870_consen  218 GETWSEPIIPIKTNGYGILDLAYR---PPNEIWAVGG-SGTLLV-STDGGKTWQ------KDRVGENVPSNLYRIVFVN-  285 (302)
T ss_dssp             EEEE---B-TTSS--S-EEEEEES---SSS-EEEEES-TT-EEE-ESSTTSS-E------E-GGGTTSSS---EEEEEE-
T ss_pred             ccccccccCCcccCceeeEEEEec---CCCCEEEEeC-CccEEE-eCCCCccce------ECccccCCCCceEEEEEcC-
Confidence            1111 1112222233457899998   6777777666 444333 233332110      0001112344577788875 


Q ss_pred             CCCeEEEeeCCceEEEE
Q 025649          231 ESENLVVCDTSKVVKVY  247 (250)
Q Consensus       231 ~~~~l~s~~~d~~i~vw  247 (250)
                      +.+-++. +.+|.|.-|
T Consensus       286 ~~~gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  286 PDKGFVL-GQDGVLLRY  301 (302)
T ss_dssp             TTEEEEE--STTEEEEE
T ss_pred             CCceEEE-CCCcEEEEe
Confidence            3344444 457877655

>PHA02790 Kelch-like protein; Provisional

Probab=89.27  E-value=11  Score=30.95  Aligned_cols=25  Identities=20%  Similarity=0.053  Sum_probs=16.9

Q ss_pred             CCCEEEEEeCC--CeEEEEeCCCceeE
Q 025649           94 TNKICVVAKGD--GVVDVINIESELNI  118 (250)
Q Consensus        94 ~~~~l~~~~~d--~~i~~~d~~~~~~~  118 (250)
                      ++.+.+.|+.+  ..+..||..+++..
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~  344 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWV  344 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEE
Confidence            67777777753  45788887765543

>PF01011 PQQ: PQQ enzyme repeat family

Probab=89.10  E-value=1.1  Score=21.76  Aligned_cols=28  Identities=25%  Similarity=0.198  Sum_probs=23.9

Q ss_pred             EEEEecCCCeEEEEEccCCCCccceecC
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVNFG   63 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~   63 (250)
                      .+..++.+|.|.-.|.++|+.+..++.+
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            4566699999999999999999888754

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PHA03098 kelch-like protein; Provisional

Probab=88.71  E-value=13  Score=30.99  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=14.8

Q ss_pred             CCcEEEEeeCC-----CeEEEEecCCC
Q 025649          179 RGKYLISGGND-----KLVKVWDCSRF  200 (250)
Q Consensus       179 ~~~~l~s~~~d-----~~i~iwd~~~~  200 (250)
                      ++++++.|+.+     +.+.+||..+.
T Consensus       487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        487 NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            45666666643     46888888775

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.48  E-value=5.6  Score=34.66  Aligned_cols=93  Identities=10%  Similarity=0.091  Sum_probs=57.0

Q ss_pred             CeEEEEEccCCCCccceecCCCCCCCCCCcccC-C----CceeEEecCCCcccCCCCCEEEE-EeCCCeEEEEeCCCcee
Q 025649           44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN-P----AFVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIESELN  117 (250)
Q Consensus        44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~  117 (250)
                      |.|.-+|+.+++.+.....+............+ +    .....-...      ..+.+++. +..|+.++-+|.++|+.
T Consensus       641 G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~------TagglvF~~gt~d~~l~A~D~~tGk~  714 (764)
T TIGR03074       641 GYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLA------TAGGLVFIGATQDNYLRAYDLSTGKE  714 (764)
T ss_pred             EEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEE------EcCCEEEEEeCCCCEEEEEECCCCce
Confidence            789999999999888777541111100000000 0    001110011      14566665 78999999999999999


Q ss_pred             EeeccCCCCCCccceeec-ccceeEE
Q 025649          118 ISRSKSTTKPLKGSQSTS-KVNIRDA  142 (250)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~-~~~~~~~  142 (250)
                      +.+........-.-+.+. .+|++.+
T Consensus       715 lW~~~l~~~~~a~P~tY~~~~GkQYV  740 (764)
T TIGR03074       715 LWKARLPAGGQATPMTYMGKDGKQYV  740 (764)
T ss_pred             eeEeeCCCCcccCCEEEEecCCEEEE
Confidence            988777755555566776 6777665

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.39  E-value=1.9  Score=21.16  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=16.5

Q ss_pred             CCCcEEEEe-eCCCeEEEEecCCC
Q 025649          178 ERGKYLISG-GNDKLVKVWDCSRF  200 (250)
Q Consensus       178 ~~~~~l~s~-~~d~~i~iwd~~~~  200 (250)
                      |++++|..+ ..++.|.++|..++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~   24 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATN   24 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCC
Confidence            355655554 45889999999886

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.19  E-value=12  Score=30.12  Aligned_cols=66  Identities=15%  Similarity=0.122  Sum_probs=42.4

Q ss_pred             ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649          164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD  239 (250)
Q Consensus       164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  239 (250)
                      .+++|.++.||   +|.+.+|.--.|+.|.+++........     ......+..+..|...+|..  ..-+|.-.
T Consensus        65 d~G~I~SIkFS---lDnkilAVQR~~~~v~f~nf~~d~~~l-----~~~~~ck~k~~~IlGF~W~~--s~e~A~i~  130 (657)
T KOG2377|consen   65 DKGEIKSIKFS---LDNKILAVQRTSKTVDFCNFIPDNSQL-----EYTQECKTKNANILGFCWTS--STEIAFIT  130 (657)
T ss_pred             CCCceeEEEec---cCcceEEEEecCceEEEEecCCCchhh-----HHHHHhccCcceeEEEEEec--CeeEEEEe
Confidence            45699999999   899999999999999999985432211     11112223334466667763  23344444

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.68  E-value=7.2  Score=26.88  Aligned_cols=34  Identities=12%  Similarity=0.113  Sum_probs=25.9

Q ss_pred             ccEEEEEeec--CCCC-CcEEEEeeCCCeEEEEecCC
Q 025649          166 AAASCVAFSM--FGER-GKYLISGGNDKLVKVWDCSR  199 (250)
Q Consensus       166 ~~v~~~~~~p--~~~~-~~~l~s~~~d~~i~iwd~~~  199 (250)
                      ..+.+++|||  ..++ +-+|++...++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            3789999996  2223 34788889999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=87.52  E-value=17  Score=31.96  Aligned_cols=105  Identities=14%  Similarity=0.178  Sum_probs=64.2

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC--ccceecCCCCCCCCCCcc-cCC---CceeEEecCCCcccCCCC
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQC-YNP---AFVHAIAIPDADMLDKTN   95 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~~~~~~~~~~~   95 (250)
                      .+..+++|+|.....||.....|...||++.....  ...+...    ....+.. ..+   +.-..+.|.+      +.
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~----~~~~gsi~~d~~e~s~w~rI~W~~------~~  215 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLS----RNISGSIIFDPEELSNWKRILWVS------DS  215 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeec----cCCCccccCCCcccCcceeeEecC------CC
Confidence            36779999998766899999999999999932111  1111111    0000111 111   2334566765      67


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeEe-eccCCCCCCccceeeccc
Q 025649           96 KICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQSTSKV  137 (250)
Q Consensus        96 ~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~  137 (250)
                      +.|++++. ..+.++|+++..... .........+..+.-+|.
T Consensus       216 ~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~  257 (765)
T PF10214_consen  216 NRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD  257 (765)
T ss_pred             CEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence            77777755 668999999866533 333334466777777776

These proteins are found in fungi.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.08  E-value=13  Score=33.99  Aligned_cols=80  Identities=15%  Similarity=0.271  Sum_probs=49.5

Q ss_pred             CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecC--CCc------ceeccc--------ccceeeeeeccCCceeEEE
Q 025649          163 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS--RFQ------GVQTSI--------NNDLLIKNINLNKKVNWLC  226 (250)
Q Consensus       163 ~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~--~~~------~~~~~~--------~~~~~~~~~~~~~~v~~~~  226 (250)
                      ...-.|.|+...   .+|+.+++|- ||  .+|.+.  ...      +.+...        .+.++.....+.++|..+.
T Consensus       176 ~dg~~V~~I~~t---~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~  249 (1311)
T KOG1900|consen  176 VDGVSVNCITYT---ENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT  249 (1311)
T ss_pred             cCCceEEEEEec---cCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence            345678999977   7898888775 55  455432  111      111000        0112222235677899998


Q ss_pred             ecCCCCCeEEEeeCCceEEEEeC
Q 025649          227 TTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       227 ~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ... .-..+.+-+..|+|.+|++
T Consensus       250 ID~-SR~IlY~lsek~~v~~Y~i  271 (1311)
T KOG1900|consen  250 IDN-SRNILYVLSEKGTVSAYDI  271 (1311)
T ss_pred             ecc-ccceeeeeccCceEEEEEc
Confidence            864 4557889999999999997

>smart00564 PQQ beta-propeller repeat

Probab=87.02  E-value=2  Score=19.80  Aligned_cols=26  Identities=12%  Similarity=0.162  Sum_probs=20.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeEee
Q 025649           95 NKICVVAKGDGVVDVINIESELNISR  120 (250)
Q Consensus        95 ~~~l~~~~~d~~i~~~d~~~~~~~~~  120 (250)
                      +..++.++.+|.+..+|.++|+....
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence            34677888999999999998876543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PRK13684 Ycf48-like protein; Provisional

Probab=86.83  E-value=13  Score=28.89  Aligned_cols=149  Identities=9%  Similarity=-0.018  Sum_probs=74.7

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEE-EEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVM-WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV   99 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~   99 (250)
                      ...+.++.+.|++. +++++ ..|.+.. +|- .++.-.....+            ....++++.+.+      +++.++
T Consensus       172 ~g~~~~i~~~~~g~-~v~~g-~~G~i~~s~~~-gg~tW~~~~~~------------~~~~l~~i~~~~------~g~~~~  230 (334)
T PRK13684        172 AGVVRNLRRSPDGK-YVAVS-SRGNFYSTWEP-GQTAWTPHQRN------------SSRRLQSMGFQP------DGNLWM  230 (334)
T ss_pred             cceEEEEEECCCCe-EEEEe-CCceEEEEcCC-CCCeEEEeeCC------------CcccceeeeEcC------CCCEEE
Confidence            35678899999876 55444 4455432 221 12211112211            235678888887      777766


Q ss_pred             EEeCCCeEEEEeCCCceeEeeccCC---CCCCccceeecccceeEEEeeee---ee-cc-CeeeeeeccccCccccEEEE
Q 025649          100 VAKGDGVVDVINIESELNISRSKST---TKPLKGSQSTSKVNIRDAEMEIL---DQ-SG-GKRLHLDYSVGGHTAAASCV  171 (250)
Q Consensus       100 ~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~-~~-~~~~~~~~~~~~h~~~v~~~  171 (250)
                      ++ ..|.+.+=....+..-.....+   ....+..+.+.+++..++. +..   -. .+ ...-+.+.....-....+.+
T Consensus       231 vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~  308 (334)
T PRK13684        231 LA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKI  308 (334)
T ss_pred             Ee-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEEeCCCCCCCeECCcCCCCCcceEEE
Confidence            65 4576654334444322221111   1234667788888776652 211   11 11 11111111111112356777


Q ss_pred             EeecCCCCCcEEEEeeCCCeEEEEe
Q 025649          172 AFSMFGERGKYLISGGNDKLVKVWD  196 (250)
Q Consensus       172 ~~~p~~~~~~~l~s~~~d~~i~iwd  196 (250)
                      .|.   .+++.+++| ..|.|--|+
T Consensus       309 ~~~---~~~~~~~~G-~~G~il~~~  329 (334)
T PRK13684        309 VFL---DPEKGFVLG-QRGVLLRYV  329 (334)
T ss_pred             EEe---CCCceEEEC-CCceEEEec
Confidence            777   556666655 467777665

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=86.80  E-value=21  Score=31.33  Aligned_cols=82  Identities=15%  Similarity=0.124  Sum_probs=46.6

Q ss_pred             EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC----------CC
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG----------DG  105 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~----------d~  105 (250)
                      .++.++.|+.|.-.|.++|+.+..+....... -.......+..-..+.-.|..    .+..+++|+.          +|
T Consensus       262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vd-l~~~~g~~~~g~~~~ts~P~V----~~g~VIvG~~v~d~~~~~~~~G  336 (764)
T TIGR03074       262 RIILPTSDARLIALDADTGKLCEDFGNNGTVD-LTAGMGTTPPGYYYPTSPPLV----AGTTVVIGGRVADNYSTDEPSG  336 (764)
T ss_pred             EEEEecCCCeEEEEECCCCCEEEEecCCCcee-eecccCcCCCcccccccCCEE----ECCEEEEEecccccccccCCCc
Confidence            67788899999999999999887764221000 000000001111112222221    2345555532          68


Q ss_pred             eEEEEeCCCceeEeecc
Q 025649          106 VVDVINIESELNISRSK  122 (250)
Q Consensus       106 ~i~~~d~~~~~~~~~~~  122 (250)
                      .|+-+|.++|+......
T Consensus       337 ~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       337 VIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EEEEEECCCCcEeeEEe
Confidence            89999999999886654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=86.78  E-value=13  Score=29.94  Aligned_cols=171  Identities=13%  Similarity=0.051  Sum_probs=86.3

Q ss_pred             eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc-cceecCCCCCCCCCCcccCCCcee-EEecCCCc
Q 025649           12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN-KIVNFGLPENNGNAGQCYNPAFVH-AIAIPDAD   89 (250)
Q Consensus        12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~   89 (250)
                      .+..+. .-...|..+-..|||+ .|..-+. .++.++++.+.... +.+....   .   +.  ....|+ .+..-.  
T Consensus       212 ~i~~L~-~~~~~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~ds---p---g~--~~~~Vte~l~lL~--  278 (733)
T COG4590         212 IIRLLS-VPFSDVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQIRKLVDDS---P---GD--SRHQVTEQLYLLS--  278 (733)
T ss_pred             hhhhcC-CCccchHhhEECCCCC-EEEEecC-CeEEEEeecccccchhhhhhcC---C---Cc--hHHHHHHHHHHHh--
Confidence            333455 5567788899999999 4544443 57888888654321 1111010   0   00  001122 111111  


Q ss_pred             ccCCCCCEEEEEeCCCeEEEE-eCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccE
Q 025649           90 MLDKTNKICVVAKGDGVVDVI-NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA  168 (250)
Q Consensus        90 ~~~~~~~~l~~~~~d~~i~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  168 (250)
                          .+.-+.+++.||.|.-| |.+.+-..                                   ....++.++-...++
T Consensus       279 ----Gg~SLLv~~~dG~vsQWFdvr~~~~p-----------------------------------~l~h~R~f~l~pa~~  319 (733)
T COG4590         279 ----GGFSLLVVHEDGLVSQWFDVRRDGQP-----------------------------------HLNHIRNFKLAPAEV  319 (733)
T ss_pred             ----CceeEEEEcCCCceeeeeeeecCCCC-----------------------------------cceeeeccccCcccc
Confidence                57778888899988766 55532110                                   011112222222333


Q ss_pred             EEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          169 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       169 ~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      ..+.--   .+.+-+++-+..|++.++.....         +.+ ....--+.+.-++++| .+.++++-. .|+|+++.
T Consensus       320 ~~l~pe---~~rkgF~~l~~~G~L~~f~st~~---------~~l-L~~~~~~~~~~~~~Sp-~~~~Ll~e~-~gki~~~~  384 (733)
T COG4590         320 QFLLPE---TNRKGFYSLYRNGTLQSFYSTSE---------KLL-LFERAYQAPQLVAMSP-NQAYLLSED-QGKIRLAQ  384 (733)
T ss_pred             eeeccc---cccceEEEEcCCCceeeeecccC---------cce-ehhhhhcCcceeeeCc-ccchheeec-CCceEEEE
Confidence            333322   23455666677777777765553         111 1111222444567777 666666544 56677776


Q ss_pred             C
Q 025649          249 I  249 (250)
Q Consensus       249 ~  249 (250)
                      +
T Consensus       385 l  385 (733)
T COG4590         385 L  385 (733)
T ss_pred             e
Confidence            5

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=85.90  E-value=7.6  Score=25.41  Aligned_cols=74  Identities=11%  Similarity=0.091  Sum_probs=46.9

Q ss_pred             eEEEcCCCCeEEEEecCCCeEEEEEccCC--------CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCE
Q 025649           26 SVQFIPWKPWEVISGGLDSKLVMWDFSKG--------RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI   97 (250)
Q Consensus        26 ~l~~~~~~~~~l~s~s~dg~v~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (250)
                      .-.|....+ .|+.++.-|.|.|++....        ..+..++.              ...|++++-.++.- +.....
T Consensus         3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--------------n~~italaaG~l~~-~~~~D~   66 (136)
T PF14781_consen    3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--------------NQEITALAAGRLKP-DDGRDC   66 (136)
T ss_pred             EEEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEEC--------------CCceEEEEEEecCC-CCCcCE
Confidence            445677777 7888888999999987633        23334442              35677765544211 124556


Q ss_pred             EEEEeCCCeEEEEeCCCce
Q 025649           98 CVVAKGDGVVDVINIESEL  116 (250)
Q Consensus        98 l~~~~~d~~i~~~d~~~~~  116 (250)
                      |+.|+. ..+..||+....
T Consensus        67 LliGt~-t~llaYDV~~N~   84 (136)
T PF14781_consen   67 LLIGTQ-TSLLAYDVENNS   84 (136)
T ss_pred             EEEecc-ceEEEEEcccCc
Confidence            666654 679999998654

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.37  E-value=0.14  Score=40.60  Aligned_cols=141  Identities=14%  Similarity=0.211  Sum_probs=87.3

Q ss_pred             eeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE-EEEeC
Q 025649           25 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKG  103 (250)
Q Consensus        25 ~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l-~~~~~  103 (250)
                      -...|-|.+. -++.++.+..|..||-. ++......              .+.....++|.-      ++..+ +.+-.
T Consensus        38 i~~~w~~e~~-nlavaca~tiv~~YD~a-gq~~le~n--------------~tg~aldm~wDk------egdvlavlAek   95 (615)
T KOG2247|consen   38 IIHRWRPEGH-NLAVACANTIVIYYDKA-GQVILELN--------------PTGKALDMAWDK------EGDVLAVLAEK   95 (615)
T ss_pred             ceeeEecCCC-ceehhhhhhHHHhhhhh-cceecccC--------------CchhHhhhhhcc------ccchhhhhhhc
Confidence            3556788887 47777788888888864 33333332              134445566654      55444 45567


Q ss_pred             CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeecccc-CccccEEEEEeecCCCCCcE
Q 025649          104 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG-GHTAAASCVAFSMFGERGKY  182 (250)
Q Consensus       104 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~  182 (250)
                      .+.+.+||+.+......                                       .+. .|....  +.|+   +.+..
T Consensus        96 ~~piylwd~n~eytqqL---------------------------------------E~gg~~s~sl--l~ws---Kg~~e  131 (615)
T KOG2247|consen   96 TGPIYLWDVNSEYTQQL---------------------------------------ESGGTSSKSL--LAWS---KGTPE  131 (615)
T ss_pred             CCCeeechhhhhhHHHH---------------------------------------hccCcchHHH--Hhhc---cCCcc
Confidence            88999999986331110                                       001 112211  5667   67777


Q ss_pred             EEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCc
Q 025649          183 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK  242 (250)
Q Consensus       183 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  242 (250)
                      ++.+-..|.+.|++..+.         ........|..++.++++.+.|  +.+.++.|.
T Consensus       132 l~ig~~~gn~viynhgts---------R~iiv~Gkh~RRgtq~av~lEd--~vil~dcd~  180 (615)
T KOG2247|consen  132 LVIGNNAGNIVIYNHGTS---------RRIIVMGKHQRRGTQIAVTLED--YVILCDCDN  180 (615)
T ss_pred             ccccccccceEEEeccch---------hhhhhhcccccceeEEEecccc--eeeecCcHH
Confidence            888888899999998885         4434444488889999998743  455555443

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.45  E-value=29  Score=31.59  Aligned_cols=31  Identities=16%  Similarity=0.177  Sum_probs=26.3

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFS   52 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~   52 (250)
                      ......++|+|.-. +++.+...|.|+++-..
T Consensus        35 ~~~~~~~afD~~q~-llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   35 PSTPSALAFDPTQG-LLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             CCCCcceeeccccc-eEEEEEecccEEEeccc
Confidence            34567889999988 99999999999999764

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=83.36  E-value=3.9  Score=34.11  Aligned_cols=25  Identities=16%  Similarity=0.400  Sum_probs=22.4

Q ss_pred             CCcEEEEeeCCCeEEEEecCCCcce
Q 025649          179 RGKYLISGGNDKLVKVWDCSRFQGV  203 (250)
Q Consensus       179 ~~~~l~s~~~d~~i~iwd~~~~~~~  203 (250)
                      +..++++-+.|+++|+||+.++++.
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~  253 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCL  253 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEE
Confidence            5679999999999999999999773

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2109 consensus WD40 repeat protein [General function prediction only]

Probab=82.43  E-value=1.2  Score=37.06  Aligned_cols=91  Identities=12%  Similarity=0.151  Sum_probs=52.5

Q ss_pred             EEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC-eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeE
Q 025649            4 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS-KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA   82 (250)
Q Consensus         4 iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   82 (250)
                      +=|..+...+..|+ .|..++..++|.+.+. ++++++-.| .|.++.+  .+.+.+.....+.... .........+..
T Consensus       299 vkdf~S~a~i~Qfk-AhkspiSaLcfdqsgs-llViasi~g~nVnvfRi--met~~t~~~~~qs~~~-s~ra~t~aviqd  373 (788)
T KOG2109|consen  299 VKDFDSFADIRQFK-AHKSPISALCFDQSGS-LLVIASITGRNVNVFRI--METVCTVNVSDQSLVV-SPRANTAAVIQD  373 (788)
T ss_pred             eecccchhhhhhee-eecCcccccccccCce-EEEEEeeccceeeeEEe--cccccccccccccccc-chhcchHHHHHH
Confidence            34556667778899 9999999999999999 888887765 3444443  3332222211100000 011122334445


Q ss_pred             EecCCCcccCCCCCEEEEEeCCC
Q 025649           83 IAIPDADMLDKTNKICVVAKGDG  105 (250)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~~~d~  105 (250)
                      ++|+.      ..+++..++.+|
T Consensus       374 icfs~------~s~~r~~gsc~G  390 (788)
T KOG2109|consen  374 ICFSE------VSTIRTAGSCEG  390 (788)
T ss_pred             Hhhhh------hcceEeecccCC
Confidence            55665      566677766555

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=81.24  E-value=5.7  Score=34.04  Aligned_cols=36  Identities=14%  Similarity=0.315  Sum_probs=29.8

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP   56 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~   56 (250)
                      ....++++.-+|.++ -++.++.||.|++|+....+.
T Consensus        13 ~~e~~~aiqshp~~~-s~v~~~~d~si~lfn~~~r~q   48 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQ-SFVLAHQDGSIILFNFIPRRQ   48 (1636)
T ss_pred             ccceeeeeeecCCCc-eEEEEecCCcEEEEeecccch
Confidence            445678888899998 799999999999999865444

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=81.20  E-value=23  Score=27.38  Aligned_cols=112  Identities=10%  Similarity=-0.014  Sum_probs=65.7

Q ss_pred             CeeeEEEcCCCCeEEEEecCC------CeEEEEEccCCCCccceecCCCCCCCC--CCcccCCCceeEEecCCCcccCCC
Q 025649           23 ICSSVQFIPWKPWEVISGGLD------SKLVMWDFSKGRPNKIVNFGLPENNGN--AGQCYNPAFVHAIAIPDADMLDKT   94 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~   94 (250)
                      ...+|++.+++. ++++.-.+      ..|..++.. |+.+..+..+..-....  ...........+++++|      +
T Consensus        86 D~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~------d  157 (326)
T PF13449_consen   86 DPEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP------D  157 (326)
T ss_pred             ChhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC------C
Confidence            455888877887 78877777      889888876 77766664331110000  02233456788999998      8


Q ss_pred             CCEEEEEeC-----CC--e-------EEE--EeCCC-ceeE----eeccCC----CCCCccceeecccceeEE
Q 025649           95 NKICVVAKG-----DG--V-------VDV--INIES-ELNI----SRSKST----TKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus        95 ~~~l~~~~~-----d~--~-------i~~--~d~~~-~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~  142 (250)
                      ++.|.++.+     |+  .       +++  ||..+ +...    ......    ....+..+..-+++++++
T Consensus       158 G~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv  230 (326)
T PF13449_consen  158 GRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV  230 (326)
T ss_pred             CCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence            886666643     22  1       444  44443 2111    111110    235677777778887666

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=80.86  E-value=26  Score=27.75  Aligned_cols=122  Identities=13%  Similarity=-0.007  Sum_probs=61.0

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC---CCe-EEEEEccC-CCCccceecCCCCCCCCCCcccC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---DSK-LVMWDFSK-GRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~-v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      |.-.|+.+|+....+.  -+..+..+.|+|..+.+|+-|-.   +.. -|||-+++ +...+.+....           .
T Consensus       170 i~~idl~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-----------~  236 (386)
T PF14583_consen  170 IFTIDLKTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-----------E  236 (386)
T ss_dssp             EEEEETTT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------------T
T ss_pred             EEEEECCCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-----------C
Confidence            3456788888765555  66788999999998866666533   322 36777654 33333332110           0


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEe-----CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAK-----GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME  145 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (250)
                      ...+.-=-|.|      +|..|.--+     .+..|.-+|+.++........   ......-.++||++++-.|
T Consensus       237 ~e~~gHEfw~~------DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~---p~~~H~~ss~Dg~L~vGDG  301 (386)
T PF14583_consen  237 GESVGHEFWVP------DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM---PWCSHFMSSPDGKLFVGDG  301 (386)
T ss_dssp             TEEEEEEEE-T------TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE
T ss_pred             CcccccccccC------CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC---CceeeeEEcCCCCEEEecC
Confidence            12233344565      777664432     355677788888654332222   2345666778998887433

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=80.37  E-value=23  Score=26.87  Aligned_cols=123  Identities=17%  Similarity=0.067  Sum_probs=68.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeEeeccC-CCCCCccceeecccceeEEE----eeeeeeccCeeeeeeccccCccccEE
Q 025649           95 NKICVVAKGDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNIRDAE----MEILDQSGGKRLHLDYSVGGHTAAAS  169 (250)
Q Consensus        95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~v~  169 (250)
                      ++++..+..+.-+++.|+.+...+..... .......++..+-+-.+++.    .-..|..+....+...++........
T Consensus        96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~  175 (370)
T COG5276          96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTH  175 (370)
T ss_pred             ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCce
Confidence            56777888888899999988554433222 22233344444433333331    11223333333333344444444445


Q ss_pred             EEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649          170 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       170 ~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                      .++.|     |++...+..|+-+.+-|+.....       +.+......+..+.++..++
T Consensus       176 ~v~IS-----Gn~AYvA~~d~GL~ivDVSnp~s-------Pvli~~~n~g~g~~sv~vsd  223 (370)
T COG5276         176 DVAIS-----GNYAYVAWRDGGLTIVDVSNPHS-------PVLIGSYNTGPGTYSVSVSD  223 (370)
T ss_pred             eEEEe-----cCeEEEEEeCCCeEEEEccCCCC-------CeEEEEEecCCceEEEEecC
Confidence            66766     67777888899999999988643       22222333334667776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.98
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.98
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.83
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.81
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.77
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.76
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.76
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.75
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.74
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.74
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.7
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.69
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.69
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.68
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.67
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.67
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.65
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.65
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.64
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.62
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.61
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.6
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.6
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.59
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.59
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.53
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.52
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.51
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.5
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.5
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.47
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.47
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.47
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.45
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.45
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.43
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.43
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.4
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.4
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.4
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.39
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.37
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.33
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.32
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.32
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.32
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.29
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.28
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.27
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.26
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.26
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.26
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.24
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.24
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.23
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.2
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.17
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.14
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.12
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.1
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.1
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.09
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.08
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.03
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.97
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.97
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.96
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.92
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.86
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.85
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.85
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.8
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.8
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.76
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.72
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.71
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.7
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.69
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.68
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.68
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.65
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.6
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.58
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.56
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.54
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.41
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.41
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.39
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.35
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.28
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.27
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.26
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.26
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.25
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.23
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.22
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.21
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.2
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.17
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.16
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.07
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.06
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.03
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	98.03
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.97
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.96
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.96
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.95
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.94
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.9
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.9
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.8
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.8
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.76
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.75
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.73
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.7
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.67
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.66
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.62
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.57
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.57
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.53
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.44
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.43
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.43
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.37
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.29
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.27
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.22
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.13
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.99
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.9
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.87
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.82
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.6
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.52
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.48
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.47
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.32
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.22
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.06
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.95
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.67
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.27
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	95.25
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.25
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.23
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.22
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.13
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.93
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.87
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.82
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.55
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.46
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.41
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.4
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.24
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.08
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.88
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.9
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.74
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	92.53
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	92.16
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.96
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	91.77
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.73
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	91.4
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.23
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	90.55
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	88.68
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	88.26
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	86.99
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	85.19
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	84.84
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	84.61
3ott_A	758	Two-component system sensor histidine kinase; beta	84.27
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	84.25
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	82.64
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	81.42
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	81.41
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	81.15
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	81.02

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2e-40  Score=251.83  Aligned_cols=216  Identities=15%  Similarity=0.105  Sum_probs=176.3

Q ss_pred             CcEEEEcccceeeee----eccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            1 MWQIIDIRQHCLYKS----LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         1 ti~iwd~~~~~~~~~----l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      +|+|||+++++.+..    +. +|.+.|++++|+|+++ +|++|+.|++|++||+++++++..+. +            |
T Consensus       104 ~v~lWd~~~~~~~~~~~~~~~-~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~-~------------h  168 (344)
T 4gqb_B          104 AVELWELDENETLIVSKFCKY-EHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYR-A------------H  168 (344)
T ss_dssp             EEEEEEECTTSSCEEEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEEC-C------------C
T ss_pred             EEEEEeccCCCceeEeecccc-CCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEc-C------------c
Confidence            589999998876543    44 8999999999999999 89999999999999999999888876 3            5


Q ss_pred             CCceeEEecCCCcccCCCC-CEEEEEeCCCeEEEEeCCCceeEeeccCC-CCCCccceeecccceeEEEeeeee----ec
Q 025649           77 PAFVHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSKST-TKPLKGSQSTSKVNIRDAEMEILD----QS  150 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~  150 (250)
                      ...|.+++|+|      ++ .+|++++.|++|++||+++++....+... ....+.+++|+|++..++..+..|    .+
T Consensus       169 ~~~V~~~~~~~------~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~w  242 (344)
T 4gqb_B          169 AAQVTCVAASP------HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV  242 (344)
T ss_dssp             SSCEEEEEECS------SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             CCceEEEEecC------CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEE
Confidence            78999999998      65 57899999999999999998877665433 345688999999765443344333    33


Q ss_pred             cCeeeeeeccccCccccEEEEEeecCCCCC-cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649          151 GGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                      +....+++..+.+|...|++++|+   |++ ++|++|+.|++|+|||++++         ++ ..+.+|.+.|++++|+|
T Consensus       243 d~~~~~~~~~~~~h~~~v~~v~fs---p~g~~~lasgs~D~~i~vwd~~~~---------~~-~~~~~H~~~V~~v~~sp  309 (344)
T 4gqb_B          243 DTKSTSCVLSSAVHSQCVTGLVFS---PHSVPFLASLSEDCSLAVLDSSLS---------EL-FRSQAHRDFVRDATWSP  309 (344)
T ss_dssp             ESCC--CCEEEECCSSCEEEEEEC---SSSSCCEEEEETTSCEEEECTTCC---------EE-EEECCCSSCEEEEEECS
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEc---cCCCeEEEEEeCCCeEEEEECCCC---------cE-EEEcCCCCCEEEEEEeC
Confidence            445566778899999999999999   776 68999999999999999986         33 35689999999999998


Q ss_pred             CCCCeEEEeeCCceEEEEeCC
Q 025649          230 TESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       230 ~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .+..+|++|+.|++|++|+++
T Consensus       310 ~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          310 LNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             SSTTEEEEEETTSCEEEEECC
T ss_pred             CCCeEEEEEcCCCeEEEEECC
Confidence            444567899999999999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.4e-40  Score=246.27  Aligned_cols=214  Identities=16%  Similarity=0.185  Sum_probs=187.7

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+.+++.+..+. .|...+.+++|+|+++ +|++|+.||.|++||+++++....+..             +...+
T Consensus       103 ~i~lWd~~~~~~~~~~~-~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~-------------~~~~v  167 (321)
T 3ow8_A          103 HIRLWDLENGKQIKSID-AGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDT-------------RGKFI  167 (321)
T ss_dssp             EEEEEETTTTEEEEEEE-CCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEEC-------------SSSCE
T ss_pred             cEEEEECCCCCEEEEEe-CCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecC-------------CCceE
Confidence            58999999999999999 9999999999999999 899999999999999999887776653             35679


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLH  156 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  156 (250)
                      .+++|+|      ++++|++|+.|+.|++||+++++....+..+ ...+.+++|+|+++++++ +..|    .++....+
T Consensus       168 ~~~~~sp------dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spd~~~l~s-~s~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          168 LSIAYSP------DGKYLASGAIDGIINIFDIATGKLLHTLEGH-AMPIRSLTFSPDSQLLVT-ASDDGYIKIYDVQHAN  239 (321)
T ss_dssp             EEEEECT------TSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCCCEEEECTTSCEEEE-ECTTSCEEEEETTTCC
T ss_pred             EEEEECC------CCCEEEEEcCCCeEEEEECCCCcEEEEEccc-CCceeEEEEcCCCCEEEE-EcCCCeEEEEECCCcc
Confidence            9999999      9999999999999999999999887776544 478999999999999984 3222    23333445


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      ....+.+|...|.+++|+   |++++|++++.|++|++||++++         .++..+.+|...|.+++|+| ++++|+
T Consensus       240 ~~~~~~~h~~~v~~~~~s---p~~~~l~s~s~D~~v~iwd~~~~---------~~~~~~~~h~~~v~~v~~s~-~g~~l~  306 (321)
T 3ow8_A          240 LAGTLSGHASWVLNVAFC---PDDTHFVSSSSDKSVKVWDVGTR---------TCVHTFFDHQDQVWGVKYNG-NGSKIV  306 (321)
T ss_dssp             EEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             eeEEEcCCCCceEEEEEC---CCCCEEEEEeCCCcEEEEeCCCC---------EEEEEEcCCCCcEEEEEECC-CCCEEE
Confidence            567888999999999999   89999999999999999999997         66677889999999999998 889999


Q ss_pred             EeeCCceEEEEeCC
Q 025649          237 VCDTSKVVKVYSIS  250 (250)
Q Consensus       237 s~~~d~~i~vw~~~  250 (250)
                      +++.||.|++||++
T Consensus       307 s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          307 SVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEETTCCEEEEECC
T ss_pred             EEeCCCeEEEEeCC
Confidence            99999999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.9e-39  Score=250.69  Aligned_cols=217  Identities=16%  Similarity=0.232  Sum_probs=186.8

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|+|||+.+++....++ +|.+.|.+++|+|+++ +|++|+.|++|++||+.+++++..+. +            |...|
T Consensus       131 ~i~vwd~~~~~~~~~l~-~h~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~~~~~~~-~------------h~~~V  195 (410)
T 1vyh_C          131 TIKVWDYETGDFERTLK-GHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFECIRTMH-G------------HDHNV  195 (410)
T ss_dssp             CEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSCEEECCC-C------------CSSCE
T ss_pred             eEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEEc-C------------CCCCE
Confidence            58999999999999999 9999999999999999 89999999999999999888877775 3            57889


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLH  156 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  156 (250)
                      .+++|+|      ++++|++|+.|++|++||++++.....+..+ ...+.++.++|++.++++ +..|    .++....+
T Consensus       196 ~~v~~~p------~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~g~~l~s-~s~D~~v~vwd~~~~~  267 (410)
T 1vyh_C          196 SSVSIMP------NGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRMVRPNQDGTLIAS-CSNDQTVRVWVVATKE  267 (410)
T ss_dssp             EEEEECS------SSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSEEEE-EETTSCEEEEETTTCC
T ss_pred             EEEEEeC------CCCEEEEEeCCCeEEEEECCCCcEEEEEeCC-CccEEEEEECCCCCEEEE-EcCCCeEEEEECCCCc
Confidence            9999999      9999999999999999999999887776554 477899999999999984 3322    23333445


Q ss_pred             eeccccCccccEEEEEeecCCC-----------------CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC
Q 025649          157 LDYSVGGHTAAASCVAFSMFGE-----------------RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN  219 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~-----------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  219 (250)
                      +...+.+|...|.+++|+|...                 .+.+|++|+.|+.|++||++++         .++..+.+|.
T Consensus       268 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---------~~~~~~~~h~  338 (410)
T 1vyh_C          268 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---------MCLMTLVGHD  338 (410)
T ss_dssp             EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---------EEEEEEECCS
T ss_pred             eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---------ceEEEEECCC
Confidence            5667889999999999994110                 1679999999999999999997         6667788999


Q ss_pred             CceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          220 KKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       220 ~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ..|.+++|+| ++++|++|+.||.|++||++
T Consensus       339 ~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~  368 (410)
T 1vyh_C          339 NWVRGVLFHS-GGKFILSCADDKTLRVWDYK  368 (410)
T ss_dssp             SCEEEEEECS-SSSCEEEEETTTEEEEECCT
T ss_pred             CcEEEEEEcC-CCCEEEEEeCCCeEEEEECC
Confidence            9999999998 89999999999999999973

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.9e-39  Score=241.22  Aligned_cols=214  Identities=21%  Similarity=0.252  Sum_probs=184.7

Q ss_pred             CcEEEEccccee--eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~~--~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|+|||+.+++.  ...+. +|...|.+++|++++. ++++++.|++|++||+.+++.+..+..+             +.
T Consensus        59 ~v~vW~~~~~~~~~~~~l~-gh~~~v~~~~~~~~~~-~l~s~s~D~~i~lWd~~~~~~~~~~~~~-------------~~  123 (321)
T 3ow8_A           59 LVKVWKWRDERLDLQWSLE-GHQLGVVSVDISHTLP-IAASSSLDAHIRLWDLENGKQIKSIDAG-------------PV  123 (321)
T ss_dssp             CEEEEEEETTEEEEEEEEC-CCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECC-------------TT
T ss_pred             CEEEEECCCCCeeeeeeec-cCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCEEEEEeCC-------------Cc
Confidence            689999987653  45688 9999999999999999 8999999999999999999888877633             56


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKR  154 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  154 (250)
                      .+.+++|+|      ++++|++++.|+.|++||+++++....+... ...+.+++|+|+++++++ +..+    .++...
T Consensus       124 ~~~~~~~sp------dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~las-g~~dg~i~iwd~~~  195 (321)
T 3ow8_A          124 DAWTLAFSP------DSQYLATGTHVGKVNIFGVESGKKEYSLDTR-GKFILSIAYSPDGKYLAS-GAIDGIINIFDIAT  195 (321)
T ss_dssp             CCCCEEECT------TSSEEEEECTTSEEEEEETTTCSEEEEEECS-SSCEEEEEECTTSSEEEE-EETTSCEEEEETTT
T ss_pred             cEEEEEECC------CCCEEEEEcCCCcEEEEEcCCCceeEEecCC-CceEEEEEECCCCCEEEE-EcCCCeEEEEECCC
Confidence            788999999      9999999999999999999998877665544 367899999999999984 3322    223344


Q ss_pred             eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649          155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  234 (250)
                      .+.+..+.+|...|.+++|+   |++++|++|+.|+.|++||++++         .....+.+|...|.+++|+| ++.+
T Consensus       196 ~~~~~~~~~h~~~v~~l~~s---pd~~~l~s~s~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~~~~sp-~~~~  262 (321)
T 3ow8_A          196 GKLLHTLEGHAMPIRSLTFS---PDSQLLVTASDDGYIKIYDVQHA---------NLAGTLSGHASWVLNVAFCP-DDTH  262 (321)
T ss_dssp             TEEEEEECCCSSCCCEEEEC---TTSCEEEEECTTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECT-TSSE
T ss_pred             CcEEEEEcccCCceeEEEEc---CCCCEEEEEcCCCeEEEEECCCc---------ceeEEEcCCCCceEEEEECC-CCCE
Confidence            55667888999999999999   89999999999999999999987         56677889999999999998 8899


Q ss_pred             EEEeeCCceEEEEeCC
Q 025649          235 LVVCDTSKVVKVYSIS  250 (250)
Q Consensus       235 l~s~~~d~~i~vw~~~  250 (250)
                      |++++.|+.|++||++
T Consensus       263 l~s~s~D~~v~iwd~~  278 (321)
T 3ow8_A          263 FVSSSSDKSVKVWDVG  278 (321)
T ss_dssp             EEEEETTSCEEEEETT
T ss_pred             EEEEeCCCcEEEEeCC
Confidence            9999999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.9e-39  Score=239.09  Aligned_cols=217  Identities=14%  Similarity=0.218  Sum_probs=180.3

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|+|||+++++.+..+. +|..+|.+++|+|+++ +|++|+.|++|++||+.+++.+..+. +            |...|
T Consensus        36 ~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~-~------------h~~~v  100 (304)
T 2ynn_A           36 RVELWNYETQVEVRSIQ-VTETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEKVVDFE-A------------HPDYI  100 (304)
T ss_dssp             EEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCCEEEEEE-C------------CSSCE
T ss_pred             cEEEEECCCCceeEEee-ccCCcEEEEEEeCCCC-EEEEECCCCEEEEEECCCCcEEEEEe-C------------CCCcE
Confidence            48999999999999999 9999999999999999 89999999999999999999888876 3            57899


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc-cceeEEEeeeeee----ccCeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK-VNIRDAEMEILDQ----SGGKRL  155 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~  155 (250)
                      .+++|+|      ++++|++|+.|++|++||++++.........+...+.+++|+| ++..+++ +..|.    ++....
T Consensus       101 ~~~~~~~------~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s-gs~D~~v~iwd~~~~  173 (304)
T 2ynn_A          101 RSIAVHP------TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS-GCLDRTVKVWSLGQS  173 (304)
T ss_dssp             EEEEECS------SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE-EETTSEEEEEETTCS
T ss_pred             EEEEEcC------CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE-EeCCCeEEEEECCCC
Confidence            9999999      9999999999999999999987555444445568899999999 5677773 33222    222111


Q ss_pred             eeecc-ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649          156 HLDYS-VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       156 ~~~~~-~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  234 (250)
                      ..... ..+|...+..+.|+|. +++++|++|+.|++|++||++++         .++..+.+|...|..++|+| ++.+
T Consensus       174 ~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~s~D~~i~iWd~~~~---------~~~~~~~~h~~~v~~~~~~p-~~~~  242 (304)
T 2ynn_A          174 TPNFTLTTGQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTK---------SCVATLEGHMSNVSFAVFHP-TLPI  242 (304)
T ss_dssp             SCSEEEECCCTTCEEEEEECCS-TTCCEEEEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECS-SSSE
T ss_pred             CccceeccCCcCcEEEEEEEEc-CCCCEEEEEcCCCeEEEEeCCCC---------ccceeeCCCCCCEEEEEECC-CCCE
Confidence            12222 2356678999999842 37789999999999999999997         66778889999999999998 8889


Q ss_pred             EEEeeCCceEEEEeCC
Q 025649          235 LVVCDTSKVVKVYSIS  250 (250)
Q Consensus       235 l~s~~~d~~i~vw~~~  250 (250)
                      |++|+.||.|++||++
T Consensus       243 l~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          243 IISGSEDGTLKIWNSS  258 (304)
T ss_dssp             EEEEETTSCEEEEETT
T ss_pred             EEEEcCCCeEEEEECC
Confidence            9999999999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.7e-39  Score=249.04  Aligned_cols=214  Identities=18%  Similarity=0.210  Sum_probs=185.0

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|+|||+.+++++..+. +|...|.+++|+|++. +|++|+.|++|++||+++++++..+. +            |...|
T Consensus       173 ~i~iwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~-~------------h~~~v  237 (410)
T 1vyh_C          173 TIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFT-G------------HREWV  237 (410)
T ss_dssp             CCCEEETTSSCEEECCC-CCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEE-C------------CSSCE
T ss_pred             eEEEEeCCCCceeEEEc-CCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEe-C------------CCccE
Confidence            58999999999999999 9999999999999999 89999999999999999999888876 3            57889


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeeccc--------------------cee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV--------------------NIR  140 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~  140 (250)
                      .++.++|      ++++|++|+.|+.|++||++++.....+..+ ...+.+++|+|+                    |.+
T Consensus       238 ~~~~~~~------~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  310 (410)
T 1vyh_C          238 RMVRPNQ------DGTLIASCSNDQTVRVWVVATKECKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKPGPF  310 (410)
T ss_dssp             EEEEECT------TSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECCSCGGGGGGGCCSCC-------CCE
T ss_pred             EEEEECC------CCCEEEEEcCCCeEEEEECCCCceeeEecCC-CceEEEEEEcCcccccchhhhccccccccCCCCCE
Confidence            9999998      9999999999999999999998877666544 478899999996                    445


Q ss_pred             EEEeeeee----eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee
Q 025649          141 DAEMEILD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI  216 (250)
Q Consensus       141 ~~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  216 (250)
                      +++ +..|    .++....+++..+.+|...|.+++|+   |+|++|++|+.||.|++||++++         +++..+.
T Consensus       311 l~s-gs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~---~~g~~l~s~s~D~~i~vwd~~~~---------~~~~~~~  377 (410)
T 1vyh_C          311 LLS-GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH---SGGKFILSCADDKTLRVWDYKNK---------RCMKTLN  377 (410)
T ss_dssp             EEE-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC---SSSSCEEEEETTTEEEEECCTTS---------CCCEEEE
T ss_pred             EEE-EeCCCeEEEEECCCCceEEEEECCCCcEEEEEEc---CCCCEEEEEeCCCeEEEEECCCC---------ceEEEEc
Confidence            663 3322    23334455677888999999999999   89999999999999999999887         5666778


Q ss_pred             ccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          217 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +|...|++++|+| ++.+|++|+.||.|++|+++
T Consensus       378 ~h~~~v~~l~~~~-~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          378 AHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CCSSCEEEEEECS-SSSCEEEEETTSEEEEEC--
T ss_pred             CCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Confidence            9999999999998 88899999999999999975

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-38  Score=243.65  Aligned_cols=216  Identities=15%  Similarity=0.133  Sum_probs=171.5

Q ss_pred             CcEEEEcccceeee----eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            1 MWQIIDIRQHCLYK----SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         1 ti~iwd~~~~~~~~----~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      +|+|||+.+++...    ... +|.+.|++++|+|+++ +|++|+.|++|++||+++++.+..+..             |
T Consensus       116 ~v~lWd~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~-------------h  180 (357)
T 4g56_B          116 AVELWEILEKESLLVNKFAKY-EHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNA-------------H  180 (357)
T ss_dssp             CEEEC--------CCCCEEEC-CCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECC-------------C
T ss_pred             EEEEeeccccceeEEEeeccC-CCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcC-------------C
Confidence            58999999887543    234 7999999999999999 899999999999999999988887763             4


Q ss_pred             CCceeEEecCCCcccCCCC-CEEEEEeCCCeEEEEeCCCceeEeeccC-CCCCCccceeecccceeEEEeeeeee----c
Q 025649           77 PAFVHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNIRDAEMEILDQ----S  150 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~  150 (250)
                      ...|.+++|+|      ++ .++++++.|+.|++||+++++....... .....+.+++|+|++..++..+..+.    +
T Consensus       181 ~~~v~~v~~s~------~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~w  254 (357)
T 4g56_B          181 SSEVNCVAACP------GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV  254 (357)
T ss_dssp             SSCEEEEEECT------TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEE
T ss_pred             CCCEEEEEEcc------CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEE
Confidence            78899999998      55 5889999999999999999877655443 34467899999998654443444332    3


Q ss_pred             cCeeeeeeccccCccccEEEEEeecCCCCC-cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649          151 GGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                      +....+.+..+.+|...|++++|+   |++ ++|++|+.|++|+|||++++         +++ ...+|...|++++|+|
T Consensus       255 d~~~~~~~~~~~~~~~~v~~l~~s---p~~~~~lasgs~D~~i~iwd~~~~---------~~~-~~~~H~~~V~~vafsP  321 (357)
T 4g56_B          255 NIKNPDSAQTSAVHSQNITGLAYS---YHSSPFLASISEDCTVAVLDADFS---------EVF-RDLSHRDFVTGVAWSP  321 (357)
T ss_dssp             ESSCGGGCEEECCCSSCEEEEEEC---SSSSCCEEEEETTSCEEEECTTSC---------EEE-EECCCSSCEEEEEECS
T ss_pred             ECCCCcEeEEEeccceeEEEEEEc---CCCCCEEEEEeCCCEEEEEECCCC---------cEe-EECCCCCCEEEEEEeC
Confidence            344455667888999999999999   665 68999999999999999986         443 4458999999999998


Q ss_pred             CCCCeEEEeeCCceEEEEeCC
Q 025649          230 TESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       230 ~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .++.+|++|+.||+|++|+++
T Consensus       322 ~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          322 LDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             SSTTEEEEEETTSCEEEEECC
T ss_pred             CCCCEEEEEcCCCeEEEEECC
Confidence            789999999999999999974

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.8e-37  Score=238.33  Aligned_cols=216  Identities=18%  Similarity=0.229  Sum_probs=182.1

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|+|||+++++.+..+. +|...|.+++|+|+++ +|++|+.|++|++||+++++....+.              +...+
T Consensus       146 ~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--------------~~~~v  209 (393)
T 1erj_A          146 LIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLS--------------IEDGV  209 (393)
T ss_dssp             CEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE--------------CSSCE
T ss_pred             eEEEEECCCCcEEEEEc-cCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEE--------------cCCCc
Confidence            58999999999999999 9999999999999999 89999999999999999988777766              34678


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeecc------CCCCCCccceeecccceeEEE------eeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK------STTKPLKGSQSTSKVNIRDAE------MEILD  148 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~------~~~~~  148 (250)
                      .+++++|     .++++|++|+.|+.|++||+++++......      ..+...+.+++|+|+++++++      +..|+
T Consensus       210 ~~~~~~~-----~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd  284 (393)
T 1erj_A          210 TTVAVSP-----GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN  284 (393)
T ss_dssp             EEEEECS-----TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEEC-----CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            9999997     578999999999999999999987665542      234578999999999999984      22344


Q ss_pred             eccCe---------eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC
Q 025649          149 QSGGK---------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN  219 (250)
Q Consensus       149 ~~~~~---------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  219 (250)
                      .....         ...+...+.+|...|.+++|+   |++++|++|+.|+.|++||++++         ..+..+.+|.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~l~sgs~D~~v~iwd~~~~---------~~~~~l~~h~  352 (393)
T 1erj_A          285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT---QNDEYILSGSKDRGVLFWDKKSG---------NPLLMLQGHR  352 (393)
T ss_dssp             C---------------CEEEEEECCSSCEEEEEEC---GGGCEEEEEETTSEEEEEETTTC---------CEEEEEECCS
T ss_pred             CCCCCCcccccCCCCCcceEEEecccCcEEEEEEC---CCCCEEEEEeCCCeEEEEECCCC---------eEEEEECCCC
Confidence            33211         123445677899999999999   89999999999999999999997         5667788999


Q ss_pred             CceeEEEecC-----CCCCeEEEeeCCceEEEEeC
Q 025649          220 KKVNWLCTTP-----TESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       220 ~~v~~~~~~~-----~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ..|.+++|++     +++.+|++|+.||.|++|++
T Consensus       353 ~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          353 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY  387 (393)
T ss_dssp             SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             CCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence            9999999986     26789999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-36  Score=227.83  Aligned_cols=216  Identities=16%  Similarity=0.142  Sum_probs=176.9

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+.+++.+..+. +|.+.|.+++|+|+++ +|++|+.|++|++||++++..+.....+            |...|
T Consensus        78 ~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~------------h~~~v  143 (304)
T 2ynn_A           78 RIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEG------------HEHFV  143 (304)
T ss_dssp             EEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECC------------CCSCE
T ss_pred             EEEEEECCCCcEEEEEe-CCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcc------------cCCcE
Confidence            48999999999999999 9999999999999999 8999999999999999887543332223            67889


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc--cceeEEEeee----eeeccCee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK--VNIRDAEMEI----LDQSGGKR  154 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~  154 (250)
                      .+++|+|     .++.+|++|+.|+.|++||++.+.........+...+..+.++|  ++.++++ +.    ...++...
T Consensus       144 ~~v~~~p-----~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~s~D~~i~iWd~~~  217 (304)
T 2ynn_A          144 MCVAFNP-----KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT-ASDDLTIKIWDYQT  217 (304)
T ss_dssp             EEEEECT-----TCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE-EETTSEEEEEETTT
T ss_pred             EEEEECC-----CCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE-EcCCCeEEEEeCCC
Confidence            9999998     35789999999999999999887766655555556788888876  6777774 32    22333444


Q ss_pred             eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC-
Q 025649          155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-  233 (250)
Q Consensus       155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-  233 (250)
                      .+++..+.+|...|.+++|+   |++++|++|+.||+|++||++++         +++..+..|...+++++++|.++. 
T Consensus       218 ~~~~~~~~~h~~~v~~~~~~---p~~~~l~s~s~Dg~i~iWd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  285 (304)
T 2ynn_A          218 KSCVATLEGHMSNVSFAVFH---PTLPIIISGSEDGTLKIWNSSTY---------KVEKTLNVGLERSWCIATHPTGRKN  285 (304)
T ss_dssp             TEEEEEEECCSSCEEEEEEC---SSSSEEEEEETTSCEEEEETTTC---------CEEEEECCSSSSEEEEEECTTCGGG
T ss_pred             CccceeeCCCCCCEEEEEEC---CCCCEEEEEcCCCeEEEEECCCC---------ceeeeccCCCccEEEEEECCCCCce
Confidence            56677889999999999999   89999999999999999999997         666777889999999999985544 


Q ss_pred             eEEEeeCCceEEEEeC
Q 025649          234 NLVVCDTSKVVKVYSI  249 (250)
Q Consensus       234 ~l~s~~~d~~i~vw~~  249 (250)
                      ++++|+.|| +.+|++
T Consensus       286 ~~asg~~~g-~~~~~~  300 (304)
T 2ynn_A          286 YIASGFDNG-FTVLSL  300 (304)
T ss_dssp             CEEEEETTE-EEEEEC
T ss_pred             EEEEecCCc-eEEEEe
Confidence            477777665 667765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.4e-36  Score=232.75  Aligned_cols=215  Identities=8%  Similarity=0.064  Sum_probs=166.0

Q ss_pred             CcEEEEcccceee----eeec----cCCCCCeeeEEEcCCCCeEEE--EecCCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649            1 MWQIIDIRQHCLY----KSLR----AGHSSICSSVQFIPWKPWEVI--SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN   70 (250)
Q Consensus         1 ti~iwd~~~~~~~----~~l~----~~h~~~v~~l~~~~~~~~~l~--s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~   70 (250)
                      ++|+|++.+.+..    ....    ..+...+.+++|+|||+ +|+  +++.|++|+|||+++++++..+.         
T Consensus       105 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~-~la~as~~~d~~i~iwd~~~~~~~~~~~---------  174 (365)
T 4h5i_A          105 HLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT-VAAIASSKVPAIMRIIDPSDLTEKFEIE---------  174 (365)
T ss_dssp             CEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS-CEEEEESCSSCEEEEEETTTTEEEEEEE---------
T ss_pred             cEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC-EEEEEECCCCCEEEEeECCCCcEEEEeC---------
Confidence            4789998754321    1111    03456689999999999 654  56689999999999998887776         


Q ss_pred             CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe-eccCCCCCCccceeecccceeEEEeee---
Q 025649           71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQSTSKVNIRDAEMEI---  146 (250)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---  146 (250)
                           +...|.+++|+|      +++++++++.++ +.+|+..++.... .....+...+.+++|+|+++.+++...   
T Consensus       175 -----~~~~V~~v~fsp------dg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~  242 (365)
T 4h5i_A          175 -----TRGEVKDLHFST------DGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG  242 (365)
T ss_dssp             -----CSSCCCEEEECT------TSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS
T ss_pred             -----CCCceEEEEEcc------CCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc
Confidence                 457799999999      999999998655 6666666655543 344445577899999999999984321   


Q ss_pred             -------eeeccC-eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee-eec
Q 025649          147 -------LDQSGG-KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NIN  217 (250)
Q Consensus       147 -------~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~  217 (250)
                             ++.... ........+.+|...|++++|+   |+|++||+|+.|++|+|||++++         +++.. ..+
T Consensus       243 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~S---pdg~~lasgs~D~~V~iwd~~~~---------~~~~~~~~g  310 (365)
T 4h5i_A          243 KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVD---MKGELAVLASNDNSIALVKLKDL---------SMSKIFKQA  310 (365)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEEC---TTSCEEEEEETTSCEEEEETTTT---------EEEEEETTS
T ss_pred             ceeEEeecccccceecceeeeeecCCCCCeEeEEEC---CCCCceEEEcCCCEEEEEECCCC---------cEEEEecCc
Confidence                   111111 1222345677899999999999   89999999999999999999997         55555 468


Q ss_pred             cCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          218 LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      |...|++++|+| ||++|++||.|++|+||+++
T Consensus       311 H~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          311 HSFAITEVTISP-DSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             SSSCEEEEEECT-TSCEEEEEETTSEEEEEECC
T ss_pred             ccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcC
Confidence            999999999998 99999999999999999984

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.5e-36  Score=226.73  Aligned_cols=221  Identities=15%  Similarity=0.204  Sum_probs=172.4

Q ss_pred             CcEEEEccc-----ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649            1 MWQIIDIRQ-----HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         1 ti~iwd~~~-----~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      +|++||+.+     +..+..++ +|...|.+++|+|+++ +|++|+.|++|++||+++++.+..+. +            
T Consensus        41 ~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~-~l~s~s~D~~v~~wd~~~~~~~~~~~-~------------  105 (319)
T 3frx_A           41 TLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGA-YALSASWDKTLRLWDVATGETYQRFV-G------------  105 (319)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE-C------------
T ss_pred             cEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCeeEEEc-c------------
Confidence            589999864     34577889 9999999999999999 89999999999999999998887776 3            


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccce------eEEEeeeee-
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI------RDAEMEILD-  148 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-  148 (250)
                      |...|.+++|+|      ++++|++|+.|++|++||++... ...+.. +...+.++.++|.+.      .+++ +..| 
T Consensus       106 h~~~v~~~~~~~------~~~~l~s~s~D~~i~vwd~~~~~-~~~~~~-h~~~v~~~~~~~~~~~~~~~~~l~s-~~~d~  176 (319)
T 3frx_A          106 HKSDVMSVDIDK------KASMIISGSRDKTIKVWTIKGQC-LATLLG-HNDWVSQVRVVPNEKADDDSVTIIS-AGNDK  176 (319)
T ss_dssp             CSSCEEEEEECT------TSCEEEEEETTSCEEEEETTSCE-EEEECC-CSSCEEEEEECCC------CCEEEE-EETTS
T ss_pred             CCCcEEEEEEcC------CCCEEEEEeCCCeEEEEECCCCe-EEEEec-cCCcEEEEEEccCCCCCCCccEEEE-EeCCC
Confidence            578899999998      99999999999999999997543 333333 346788999988543      5653 3322 


Q ss_pred             ---eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccc----------------
Q 025649          149 ---QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN----------------  209 (250)
Q Consensus       149 ---~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------------  209 (250)
                         .++....+....+.+|...|.+++|+   |++++|++|+.||.|++||+++++........                
T Consensus       177 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~s---p~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la  253 (319)
T 3frx_A          177 MVKAWNLNQFQIEADFIGHNSNINTLTAS---PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA  253 (319)
T ss_dssp             CEEEEETTTTEEEEEECCCCSCEEEEEEC---TTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEE
T ss_pred             EEEEEECCcchhheeecCCCCcEEEEEEc---CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEE
Confidence               22333444556788999999999999   89999999999999999999887544211100                


Q ss_pred             ---------------ceeeee--------eccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          210 ---------------DLLIKN--------INLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       210 ---------------~~~~~~--------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                                     ..+...        ..|...+.+++|+| ||++|++|+.||.|++||+
T Consensus       254 ~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          254 AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQV  315 (319)
T ss_dssp             EEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT-TSSEEEEEETTSCEEEEEE
T ss_pred             EEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC-CCCEEEEeecCceEEEEEE
Confidence                           001111        13456688999998 9999999999999999997

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.2e-35  Score=225.67  Aligned_cols=209  Identities=15%  Similarity=0.254  Sum_probs=175.3

Q ss_pred             CcEEEEcccc----eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            1 MWQIIDIRQH----CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         1 ti~iwd~~~~----~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      +|++||+.++    +....+. +|.+.|.++.|++++  .+++++.|++|++||+++++.+..+. +            |
T Consensus       120 ~v~iw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~-~------------h  183 (340)
T 1got_B          120 ICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFT-G------------H  183 (340)
T ss_dssp             EEEEEETTTCSBSCEEEEEEE-CCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEEC-C------------C
T ss_pred             eEEEEECccCCCcceeEEEec-CCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEc-C------------C
Confidence            3789999865    4566788 999999999999987  48999999999999999998877776 3            5


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeeec
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQS  150 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  150 (250)
                      ...|.+++|+|      +++++++|+.|+.|++||++++.....+..+ ...+.+++|+|+++++++.      ..||..
T Consensus       184 ~~~v~~~~~~~------~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~  256 (340)
T 1got_B          184 TGDVMSLSLAP------DTRLFVSGACDASAKLWDVREGMCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLR  256 (340)
T ss_dssp             SSCEEEEEECT------TSSEEEEEETTSCEEEEETTTCSEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCceEEEEECC------CCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-cCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence            78899999999      9999999999999999999998877666544 4789999999999999842      233333


Q ss_pred             cCeeeeeeccc--cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649          151 GGKRLHLDYSV--GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT  228 (250)
Q Consensus       151 ~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  228 (250)
                      ...   .+..+  ..+...|.+++|+   |+|++|++|+.|+.|++||+.++         ..+..+.+|...|.+++|+
T Consensus       257 ~~~---~~~~~~~~~~~~~v~~~~~s---~~g~~l~~g~~d~~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~s  321 (340)
T 1got_B          257 ADQ---ELMTYSHDNIICGITSVSFS---KSGRLLLAGYDDFNCNVWDALKA---------DRAGVLAGHDNRVSCLGVT  321 (340)
T ss_dssp             TTE---EEEEECCTTCCSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEEC
T ss_pred             CCc---EEEEEccCCcccceEEEEEC---CCCCEEEEECCCCeEEEEEcccC---------cEeeEeecCCCcEEEEEEc
Confidence            222   22222  3344579999999   89999999999999999999987         5666788999999999999


Q ss_pred             CCCCCeEEEeeCCceEEEEe
Q 025649          229 PTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       229 ~~~~~~l~s~~~d~~i~vw~  248 (250)
                      | ++.+|++|+.|+.|+|||
T Consensus       322 ~-dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          322 D-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             T-TSSCEEEEETTSCEEEEC
T ss_pred             C-CCCEEEEEcCCccEEecC
Confidence            8 899999999999999997

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.2e-36  Score=225.08  Aligned_cols=221  Identities=16%  Similarity=0.161  Sum_probs=169.6

Q ss_pred             CcEEEEcccce--eeeeeccCCCCCeeeEEEcCC--CCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            1 MWQIIDIRQHC--LYKSLRAGHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         1 ti~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      +|+|||+.+++  .+..++ +|.+.|.+++|+|.  +. +|++|+.|++|++||+++++........           .|
T Consensus        36 ~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~-----------~h  102 (316)
T 3bg1_A           36 SVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGN-ILASCSYDRKVIIWREENGTWEKSHEHA-----------GH  102 (316)
T ss_dssp             EEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSS-CEEEEETTSCEEEECCSSSCCCEEEEEC-----------CC
T ss_pred             eEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCC-EEEEEECCCEEEEEECCCCcceEEEEcc-----------CC
Confidence            58999998764  567889 99999999999863  67 8999999999999999887532222211           16


Q ss_pred             CCceeEEecCCCcccCCC--CCEEEEEeCCCeEEEEeCCCceeE--eeccCCCCCCccceeeccc---------------
Q 025649           77 PAFVHAIAIPDADMLDKT--NKICVVAKGDGVVDVINIESELNI--SRSKSTTKPLKGSQSTSKV---------------  137 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~---------------  137 (250)
                      ...|.+++|+|      +  +.+|++|+.|+.|++||++.+...  ......+...+.+++|+|+               
T Consensus       103 ~~~V~~v~~~p------~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  176 (316)
T 3bg1_A          103 DSSVNSVCWAP------HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKP  176 (316)
T ss_dssp             SSCCCEEEECC------TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCC
T ss_pred             CCceEEEEECC------CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCc
Confidence            78899999998      5  789999999999999999875322  2333344567889999987               


Q ss_pred             --ceeEEE------eeeeeeccCeeeeeeccccCccccEEEEEeecCCCCC----cEEEEeeCCCeEEEEecCCCcceec
Q 025649          138 --NIRDAE------MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG----KYLISGGNDKLVKVWDCSRFQGVQT  205 (250)
Q Consensus       138 --~~~~~~------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~~  205 (250)
                        ++++++      +..|+.......+.+..+.+|...|.+++|+   |++    ++|++|+.|++|++||+....... 
T Consensus       177 ~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s---p~~~~~~~~las~s~D~~v~iw~~~~~~~~~-  252 (316)
T 3bg1_A          177 NYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA---PSIGLPTSTIASCSQDGRVFIWTCDDASSNT-  252 (316)
T ss_dssp             CCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC---CCSSCSCCEEEEEETTCEEEEEECSSTTCCC-
T ss_pred             cccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEec---CCCCCCCceEEEEcCCCeEEEEEccCccccc-
Confidence              356663      2234433222234567889999999999999   665    899999999999999998732100 


Q ss_pred             ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          206 SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                          .....+..|...|++++|+| ++++|++++.|+.|++|+.
T Consensus       253 ----~~~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          253 ----WSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             ----CBCCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEE
T ss_pred             ----hhhhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEE
Confidence                11223457889999999998 8899999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.2e-35  Score=220.19  Aligned_cols=220  Identities=18%  Similarity=0.218  Sum_probs=168.8

Q ss_pred             CcEEEEccc--ceeeeeeccCCCCCeeeEEEcCC--CCeEEEEecCCCeEEEEEccCCCC--ccceecCCCCCCCCCCcc
Q 025649            1 MWQIIDIRQ--HCLYKSLRAGHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQC   74 (250)
Q Consensus         1 ti~iwd~~~--~~~~~~l~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~   74 (250)
                      +|+|||+++  .+.+.++. +|.++|.+++|+|.  ++ +|++|+.|++|++||+++++.  +..+. .           
T Consensus        32 ~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~-----------   97 (297)
T 2pm7_B           32 TIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGT-ILASCSYDGKVMIWKEENGRWSQIAVHA-V-----------   97 (297)
T ss_dssp             CEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCS-EEEEEETTTEEEEEEBSSSCBCCCEEEC-C-----------
T ss_pred             EEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCC-EEEEEcCCCEEEEEEcCCCceEEEEEee-c-----------
Confidence            689999974  47788999 99999999999864  67 899999999999999987752  33332 2           


Q ss_pred             cCCCceeEEecCCCcccCCC--CCEEEEEeCCCeEEEEeCCCceeE-eeccCCCCCCccceeeccc-------------c
Q 025649           75 YNPAFVHAIAIPDADMLDKT--NKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSKV-------------N  138 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------~  138 (250)
                       |...|.+++|+|      +  +.+|++++.|+.|++||++.+... ......+...+.+++|+|+             +
T Consensus        98 -h~~~v~~v~~~p------~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~  170 (297)
T 2pm7_B           98 -HSASVNSVQWAP------HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES  170 (297)
T ss_dssp             -CSSCEEEEEECC------GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------C
T ss_pred             -CCCceeEEEeCc------CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCc
Confidence             577899999998      5  889999999999999999875321 2222334578899999997             4


Q ss_pred             eeEEE------eeeeeeccCe-eeeeeccccCccccEEEEEeecCCCC---CcEEEEeeCCCeEEEEecCCCcceecccc
Q 025649          139 IRDAE------MEILDQSGGK-RLHLDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQGVQTSIN  208 (250)
Q Consensus       139 ~~~~~------~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~p~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  208 (250)
                      +++++      +..|+..... .......+.+|...|.+++|+   |+   +++|++++.|++|++||++.......   
T Consensus       171 ~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~s---p~~~~~~~las~s~D~~v~iWd~~~~~~~~~---  244 (297)
T 2pm7_B          171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS---PTVLLRSYMASVSQDRTCIIWTQDNEQGPWK---  244 (297)
T ss_dssp             CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC---CCCSSSEEEEEEETTSCEEEEEESSTTSCCE---
T ss_pred             ceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEEC---CCCCCceEEEEEECCCcEEEEEeCCCCCccc---
Confidence            56763      2234433322 233556788999999999999   66   58999999999999999987421100   


Q ss_pred             cceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          209 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                       ........|...|.+++|+| ++++|++++.|+.|++|+.
T Consensus       245 -~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          245 -KTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             -EEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEEE
T ss_pred             -eeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEEE
Confidence             01111246788999999998 8999999999999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.6e-36  Score=228.46  Aligned_cols=203  Identities=9%  Similarity=0.108  Sum_probs=159.1

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      .|...|.+++|+|++  .|++|+.||+|+|||+++++.+..+...         ...|...|.+++|+|      ++++|
T Consensus        80 ~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~~~~~~---------~~~H~~~V~~v~~sp------dg~~l  142 (344)
T 4gqb_B           80 QTEAGVADLTWVGER--GILVASDSGAVELWELDENETLIVSKFC---------KYEHDDIVSTVSVLS------SGTQA  142 (344)
T ss_dssp             EESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSCEEEEEE---------EECCSSCEEEEEECT------TSSEE
T ss_pred             ccCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCceeEeecc---------ccCCCCCEEEEEECC------CCCEE
Confidence            367789999999986  5889999999999999998876655421         112788999999999      99999


Q ss_pred             EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeeeeeeccc--cCccccEEEEE
Q 025649           99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLDYSV--GGHTAAASCVA  172 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~h~~~v~~~~  172 (250)
                      ++|+.|++|++||+++++.+..+..+ ...+.+++|+|++..++..+..|.    ++....+....+  ..|...+.+++
T Consensus       143 ~sgs~d~~i~iwd~~~~~~~~~~~~h-~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  221 (344)
T 4gqb_B          143 VSGSKDICIKVWDLAQQVVLSSYRAH-AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA  221 (344)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCc-CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeee
Confidence            99999999999999999888777654 478999999999865433333332    222223333333  34566799999


Q ss_pred             eecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          173 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       173 ~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      |+|  .++++|++|+.||.|++||++++         +++..+.+|...|++++|+|...++|++|+.|++|+|||++
T Consensus       222 ~~p--~~~~~l~sg~~dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~  288 (344)
T 4gqb_B          222 WHP--QQSEVFVFGDENGTVSLVDTKST---------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS  288 (344)
T ss_dssp             ECS--SCTTEEEEEETTSEEEEEESCC-----------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             ecC--CCCcceEEeccCCcEEEEECCCC---------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence            994  36789999999999999999997         66677889999999999998434689999999999999974

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.4e-36  Score=226.97  Aligned_cols=209  Identities=14%  Similarity=0.108  Sum_probs=173.0

Q ss_pred             cceeeeeeccCCCC-CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccc--eecCCCCCCCCCCcccCCCceeEEec
Q 025649            9 QHCLYKSLRAGHSS-ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI--VNFGLPENNGNAGQCYNPAFVHAIAI   85 (250)
Q Consensus         9 ~~~~~~~l~~~h~~-~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~   85 (250)
                      ..+++.+++ +|.. .|.+++|+|+++ +|++|+.|++|++||+.+++....  +..+            |...|.+++|
T Consensus         4 ~~~~~~~~~-~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~~~~~~~------------h~~~v~~~~~   69 (345)
T 3fm0_A            4 SLVLLGRVP-AHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEG------------HQRTVRKVAW   69 (345)
T ss_dssp             CEEEEEEEC-CSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEEEEECSS------------CSSCEEEEEE
T ss_pred             cEEEeeeec-CCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceeeeeeccc------------cCCcEEEEEE
Confidence            346778899 9988 999999999999 899999999999999987753322  2223            6789999999


Q ss_pred             CCCcccCCCCCEEEEEeCCCeEEEEeCCCcee--EeeccCCCCCCccceeecccceeEEE------eeeeeeccCeeeee
Q 025649           86 PDADMLDKTNKICVVAKGDGVVDVINIESELN--ISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKRLHL  157 (250)
Q Consensus        86 ~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  157 (250)
                      +|      ++++|++|+.|+.+++||+..+..  ...+. .+...+.+++|+|+++++++      +..|+........+
T Consensus        70 sp------~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~  142 (345)
T 3fm0_A           70 SP------CGNYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC  142 (345)
T ss_dssp             CT------TSSEEEEEETTSCEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred             CC------CCCEEEEEECCCcEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE
Confidence            99      999999999999999999987643  33333 34578999999999999985      23455544445556


Q ss_pred             eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE
Q 025649          158 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV  237 (250)
Q Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  237 (250)
                      +..+.+|...|.+++|+   |++++|++|+.|+.|++||.+.+..       .....+.+|...|++++|+| ++++|++
T Consensus       143 ~~~~~~h~~~v~~~~~~---p~~~~l~s~s~d~~i~~w~~~~~~~-------~~~~~~~~h~~~v~~l~~sp-~g~~l~s  211 (345)
T 3fm0_A          143 VSVLNSHTQDVKHVVWH---PSQELLASASYDDTVKLYREEEDDW-------VCCATLEGHESTVWSLAFDP-SGQRLAS  211 (345)
T ss_dssp             EEEECCCCSCEEEEEEC---SSSSCEEEEETTSCEEEEEEETTEE-------EEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred             EEEecCcCCCeEEEEEC---CCCCEEEEEeCCCcEEEEEecCCCE-------EEEEEecCCCCceEEEEECC-CCCEEEE
Confidence            77888999999999999   8999999999999999999987532       23456789999999999998 8999999


Q ss_pred             eeCCceEEEEeC
Q 025649          238 CDTSKVVKVYSI  249 (250)
Q Consensus       238 ~~~d~~i~vw~~  249 (250)
                      |+.|+.|++|++
T Consensus       212 ~s~D~~v~iW~~  223 (345)
T 3fm0_A          212 CSDDRTVRIWRQ  223 (345)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EeCCCeEEEecc
Confidence            999999999984

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.7e-36  Score=242.72  Aligned_cols=212  Identities=13%  Similarity=0.106  Sum_probs=173.1

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc--ceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK--IVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|+|||+.+++....+. +|...|++++|+|+|+ +|++|+.||+|+|||+.+++...  .+. +            |..
T Consensus        40 ~v~l~~~~~~~~~~~~~-~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~~~~-~------------~~~  104 (611)
T 1nr0_A           40 SVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKTTIP-V------------FSG  104 (611)
T ss_dssp             EEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEEEEE-C------------SSS
T ss_pred             EEEEecCCCcccCeEec-CCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeEeec-c------------cCC
Confidence            47899999999999999 9999999999999999 99999999999999997655432  333 2            567


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCC----CeEEEEeCCCceeEeeccCCCCCCccceeeccccee-EEEeeeeee----
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGD----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR-DAEMEILDQ----  149 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----  149 (250)
                      .|.+++|+|      ++++|++++.+    +.|++||..  .....+. .+...+.+++|+|++.. ++ .+..|.    
T Consensus       105 ~v~~v~fs~------dg~~l~~~~~~~~~~~~v~~wd~~--~~~~~l~-gh~~~v~~v~f~p~~~~~l~-s~s~D~~v~l  174 (611)
T 1nr0_A          105 PVKDISWDS------ESKRIAAVGEGRERFGHVFLFDTG--TSNGNLT-GQARAMNSVDFKPSRPFRII-SGSDDNTVAI  174 (611)
T ss_dssp             CEEEEEECT------TSCEEEEEECCSSCSEEEEETTTC--CBCBCCC-CCSSCEEEEEECSSSSCEEE-EEETTSCEEE
T ss_pred             ceEEEEECC------CCCEEEEEECCCCceeEEEEeeCC--CCcceec-CCCCCceEEEECCCCCeEEE-EEeCCCeEEE
Confidence            899999999      99999988865    478888853  3333333 34578999999999975 55 443332    


Q ss_pred             ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee-------eccCCce
Q 025649          150 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-------INLNKKV  222 (250)
Q Consensus       150 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~~v  222 (250)
                      ++....+++..+.+|...|.+++|+   |+|++|++|+.|++|++||+.++..         +..+       .+|...|
T Consensus       175 wd~~~~~~~~~l~~H~~~V~~v~fs---pdg~~las~s~D~~i~lwd~~~g~~---------~~~~~~~~~~~~~h~~~V  242 (611)
T 1nr0_A          175 FEGPPFKFKSTFGEHTKFVHSVRYN---PDGSLFASTGGDGTIVLYNGVDGTK---------TGVFEDDSLKNVAHSGSV  242 (611)
T ss_dssp             EETTTBEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCCE---------EEECBCTTSSSCSSSSCE
T ss_pred             EECCCCeEeeeeccccCceEEEEEC---CCCCEEEEEECCCcEEEEECCCCcE---------eeeeccccccccccCCCE
Confidence            2334455667889999999999999   8999999999999999999998743         3333       2799999


Q ss_pred             eEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          223 NWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       223 ~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .+++|+| ++++|++++.|++|++||++
T Consensus       243 ~~v~~sp-dg~~l~s~s~D~~v~lWd~~  269 (611)
T 1nr0_A          243 FGLTWSP-DGTKIASASADKTIKIWNVA  269 (611)
T ss_dssp             EEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred             EEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence            9999998 89999999999999999974

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.2e-35  Score=228.49  Aligned_cols=223  Identities=18%  Similarity=0.197  Sum_probs=172.8

Q ss_pred             CcEEEEcccceeeeeeccCCCC------------------CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSS------------------ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF   62 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~------------------~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~   62 (250)
                      ++++|++.+++.+..+. +|..                  .|.+++|+|+++ +|++|+.|++|++||+.+++.+..+. 
T Consensus        86 ~v~i~~~~~g~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~-  162 (393)
T 1erj_A           86 TTQVYRVSDGSLVARLS-DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQ-  162 (393)
T ss_dssp             CEEEEETTTCCEEEEEC-C-----------------CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEEC-
T ss_pred             cEEEEEecCCCEEEEec-CccccccccccccccccCCCceeEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEc-
Confidence            57999999999988887 5542                  399999999999 89999999999999999888777765 


Q ss_pred             CCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc-cceeE
Q 025649           63 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK-VNIRD  141 (250)
Q Consensus        63 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  141 (250)
                      +            |...|.+++|+|      ++++|++++.|++|++||+++++........  ..+.+++++| +++++
T Consensus       163 ~------------h~~~v~~~~~~p------~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l  222 (393)
T 1erj_A          163 G------------HEQDIYSLDYFP------SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE--DGVTTVAVSPGDGKYI  222 (393)
T ss_dssp             C------------CSSCEEEEEECT------TSSEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEECSTTCCEE
T ss_pred             c------------CCCCEEEEEEcC------CCCEEEEecCCCcEEEEECCCCeeEEEEEcC--CCcEEEEEECCCCCEE
Confidence            3            578899999999      9999999999999999999998877665543  6788999999 88888


Q ss_pred             EE------eeeeeeccCeeeeee----ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec---ccc
Q 025649          142 AE------MEILDQSGGKRLHLD----YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT---SIN  208 (250)
Q Consensus       142 ~~------~~~~~~~~~~~~~~~----~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~  208 (250)
                      ++      +..|+.........+    ....+|...|.+++|+   |++++|++|+.|+.|++||+++......   ...
T Consensus       223 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~  299 (393)
T 1erj_A          223 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT---RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS  299 (393)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEEC--------------
T ss_pred             EEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC---CCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence            84      223333322222111    1225799999999999   8999999999999999999987533211   111


Q ss_pred             cceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          209 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ..+...+.+|...|.+++|+| ++++|++|+.|+.|++||++
T Consensus       300 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~  340 (393)
T 1erj_A          300 GTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKK  340 (393)
T ss_dssp             -CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETT
T ss_pred             CcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECC
Confidence            234456778999999999998 88899999999999999963

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.6e-35  Score=222.92  Aligned_cols=229  Identities=15%  Similarity=0.125  Sum_probs=173.2

Q ss_pred             CcEEEEcccc--eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQH--CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~--~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|+|||+.++  +.+..+. +|...|.+++|+|+++ +|++|+.|++|++||++++.....+..          ...|..
T Consensus        84 ~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~----------~~~h~~  151 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSV----------LNSHTQ  151 (345)
T ss_dssp             CEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEE----------ECCCCS
T ss_pred             cEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEE----------ecCcCC
Confidence            5899998866  4677888 9999999999999999 899999999999999987654322210          011577


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE-eeccCCCCCCccceeecccceeEEE------eeeeeecc
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSG  151 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  151 (250)
                      .|.+++|+|      ++++|++++.|+.|++||.+.+... ......+...+.+++|+|+|+++++      +..|+...
T Consensus       152 ~v~~~~~~p------~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~  225 (345)
T 3fm0_A          152 DVKHVVWHP------SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL  225 (345)
T ss_dssp             CEEEEEECS------SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             CeEEEEECC------CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence            899999999      9999999999999999999886533 2222334578999999999999984      22344321


Q ss_pred             C------------eeeeeeccccC-ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc
Q 025649          152 G------------KRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL  218 (250)
Q Consensus       152 ~------------~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  218 (250)
                      .            ...+++..+.+ |...|.+++|+   |++..|++++.|+.|++|+....................+|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  302 (345)
T 3fm0_A          226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC---QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH  302 (345)
T ss_dssp             TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC---TTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred             CCCCccceeeccCCccceeEEecCCCCCcEEEEEEe---cCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence            1            11233444444 88899999999   89999999999999999998765322110000111233589


Q ss_pred             CCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          219 NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ...|++++|+|.++.+|++|+.||.|++|+++
T Consensus       303 ~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          303 SQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             SSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred             cCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence            99999999999544689999999999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3e-35  Score=223.49  Aligned_cols=207  Identities=14%  Similarity=0.199  Sum_probs=171.5

Q ss_pred             ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649           10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD   89 (250)
Q Consensus        10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (250)
                      .+...+++ +|.+.|.+++|+|+++ +|++|+.||+|++||+.+++.+..+..             +...|.+++|+|  
T Consensus        45 ~~~~~~l~-gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~-------------~~~~v~~~~~s~--  107 (340)
T 1got_B           45 MRTRRTLR-GHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHAIPL-------------RSSWVMTCAYAP--  107 (340)
T ss_dssp             CCEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEEEEC-------------SSSCEEEEEECT--
T ss_pred             chhheeec-CCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceEeec-------------CCccEEEEEECC--
Confidence            34567788 9999999999999999 899999999999999999888777763             467899999999  


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCcee---EeeccCCCCCCccceeecccceeEEEe--eeeeeccCeeeeeeccccCc
Q 025649           90 MLDKTNKICVVAKGDGVVDVINIESELN---ISRSKSTTKPLKGSQSTSKVNIRDAEM--EILDQSGGKRLHLDYSVGGH  164 (250)
Q Consensus        90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h  164 (250)
                          ++++|++|+.|+.|++||+.+...   .......+...+.++.|++++..+...  +....++....+.+..+.+|
T Consensus       108 ----~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h  183 (340)
T 1got_B          108 ----SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH  183 (340)
T ss_dssp             ----TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             ----CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCC
Confidence                999999999999999999987531   222223345788999999998744421  11222233444566788899


Q ss_pred             cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649          165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV  244 (250)
Q Consensus       165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  244 (250)
                      .+.|.+++|+   |+++++++|+.|+.|++||++++         .....+.+|...|.+++|+| ++++|++|+.||.|
T Consensus       184 ~~~v~~~~~~---~~~~~l~sg~~d~~v~~wd~~~~---------~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v  250 (340)
T 1got_B          184 TGDVMSLSLA---PDTRLFVSGACDASAKLWDVREG---------MCRQTFTGHESDINAICFFP-NGNAFATGSDDATC  250 (340)
T ss_dssp             SSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTC---------SEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             CCceEEEEEC---CCCCEEEEEeCCCcEEEEECCCC---------eeEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcE
Confidence            9999999999   89999999999999999999987         56667889999999999998 88999999999999


Q ss_pred             EEEeCC
Q 025649          245 KVYSIS  250 (250)
Q Consensus       245 ~vw~~~  250 (250)
                      ++||++
T Consensus       251 ~iwd~~  256 (340)
T 1got_B          251 RLFDLR  256 (340)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            999974

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.5e-35  Score=222.58  Aligned_cols=216  Identities=20%  Similarity=0.284  Sum_probs=180.3

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+++++.+..++ +|...|.+++|+|+++ +|++|+.|+.|++||+++++.+..+..             |...|
T Consensus        88 ~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------~~~~v  152 (312)
T 4ery_A           88 TLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPA-------------HSDPV  152 (312)
T ss_dssp             EEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECC-------------CSSCE
T ss_pred             EEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecC-------------CCCcE
Confidence            48999999999999999 9999999999999999 899999999999999999888777752             46789


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHL  157 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  157 (250)
                      .+++|+|      ++++|++++.|+.|++||+++++............+..++|+|+++++++.+   ....++....+.
T Consensus       153 ~~~~~~~------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  226 (312)
T 4ery_A          153 SAVHFNR------DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC  226 (312)
T ss_dssp             EEEEECT------TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred             EEEEEcC------CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence            9999998      9999999999999999999998887776666667889999999999998421   122223333445


Q ss_pred             eccccCccccEEE--EEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          158 DYSVGGHTAAASC--VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       158 ~~~~~~h~~~v~~--~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                      +..+.+|...+.+  ..+++  +++.+|++|+.||.|++||++++         +++..+.+|...|.+++|+| ++.++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~--~~~~~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~p-~~~~l  294 (312)
T 4ery_A          227 LKTYTGHKNEKYCIFANFSV--TGGKWIVSGSEDNLVYIWNLQTK---------EIVQKLQGHTDVVISTACHP-TENII  294 (312)
T ss_dssp             EEEECSSCCSSSCCCEEEEC--SSSCEEEECCTTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECS-SSSEE
T ss_pred             EEEEEecCCceEEEEEEEEe--CCCcEEEEECCCCEEEEEECCCc---------hhhhhhhccCCcEEEEeecC-cCCce
Confidence            5666777654332  33443  67899999999999999999987         67778889999999999998 78889


Q ss_pred             EEee--CCceEEEEeC
Q 025649          236 VVCD--TSKVVKVYSI  249 (250)
Q Consensus       236 ~s~~--~d~~i~vw~~  249 (250)
                      ++++  .|+.|++|+.
T Consensus       295 ~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          295 ASAALENDKTIKLWKS  310 (312)
T ss_dssp             EEEECTTTCCEEEEEC
T ss_pred             EEEEccCCccEEEecC
Confidence            9886  6999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-34  Score=221.16  Aligned_cols=213  Identities=18%  Similarity=0.220  Sum_probs=174.1

Q ss_pred             cEEEEcccc------eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649            2 WQIIDIRQH------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         2 i~iwd~~~~------~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      +++|++...      .....+. +|...|.+++|+|++. .|++++.|++|++||+++++.+..+. +            
T Consensus       130 i~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~-~------------  194 (354)
T 2pbi_B          130 CSVYPLTFDKNENMAAKKKSVA-MHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFH-G------------  194 (354)
T ss_dssp             EEEEECCCCTTCCSGGGCEEEE-ECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEE-C------------
T ss_pred             EEEEEEeccccccccccceeee-ccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEc-C------------
Confidence            688987643      3455677 8999999999999999 89999999999999999999888876 3            


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeee
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQ  149 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  149 (250)
                      |...|.+++++|    ++++++|++|+.||.|++||+++++....+..+ ...+.+++|+|++.++++.      ..||.
T Consensus       195 h~~~v~~~~~~~----~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~  269 (354)
T 2pbi_B          195 HGADVLCLDLAP----SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH-ESDVNSVRYYPSGDAFASGSDDATCRLYDL  269 (354)
T ss_dssp             CSSCEEEEEECC----CSSCCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCCeEEEEEEe----CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCCeEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            467899999987    235789999999999999999998877766544 4789999999999999842      23333


Q ss_pred             ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649          150 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       150 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                      ....... ......+...+.+++|+   |++++|++|+.|+.|++||+.++         ..+..+.+|...|.+++|+|
T Consensus       270 ~~~~~~~-~~~~~~~~~~~~~~~~s---~~g~~l~~g~~d~~i~vwd~~~~---------~~~~~l~~h~~~v~~l~~sp  336 (354)
T 2pbi_B          270 RADREVA-IYSKESIIFGASSVDFS---LSGRLLFAGYNDYTINVWDVLKG---------SRVSILFGHENRVSTLRVSP  336 (354)
T ss_dssp             TTTEEEE-EECCTTCCSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTC---------SEEEEECCCSSCEEEEEECT
T ss_pred             CCCcEEE-EEcCCCcccceeEEEEe---CCCCEEEEEECCCcEEEEECCCC---------ceEEEEECCCCcEEEEEECC
Confidence            3322221 11222344578999999   89999999999999999999887         55667789999999999998


Q ss_pred             CCCCeEEEeeCCceEEEEe
Q 025649          230 TESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       230 ~~~~~l~s~~~d~~i~vw~  248 (250)
                       ++++|++|+.|+.|++|+
T Consensus       337 -dg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          337 -DGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             -TSSCEEEEETTSEEEEEC
T ss_pred             -CCCEEEEEcCCCCEEecC
Confidence             899999999999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2e-34  Score=219.26  Aligned_cols=213  Identities=21%  Similarity=0.301  Sum_probs=166.7

Q ss_pred             CcEEEEccc-------ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649            1 MWQIIDIRQ-------HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         1 ti~iwd~~~-------~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~   73 (250)
                      +|+|||+.+       ++....+. +|...|.+++|+|++. +|++|+.|++|++||+++++.+..+. +          
T Consensus        50 ~v~iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~-~----------  116 (343)
T 2xzm_R           50 TVMIWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALSQENC-FAISSSWDKTLRLWDLRTGTTYKRFV-G----------  116 (343)
T ss_dssp             CEEEEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEECSSTT-EEEEEETTSEEEEEETTSSCEEEEEE-C----------
T ss_pred             EEEEEECCcCCcccccccccchhc-cCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCcEEEEEc-C----------
Confidence            689999874       34567788 9999999999999999 89999999999999999998887776 3          


Q ss_pred             ccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec-cCCCCCCccceeecccc----------eeEE
Q 025649           74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS-KSTTKPLKGSQSTSKVN----------IRDA  142 (250)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~  142 (250)
                        |...|.+++|+|      ++++|++++.|+.|++||+......... ...+...+.+++|+|++          .+++
T Consensus       117 --h~~~v~~v~~sp------~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~  188 (343)
T 2xzm_R          117 --HQSEVYSVAFSP------DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA  188 (343)
T ss_dssp             --CCSCEEEEEECS------STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE
T ss_pred             --CCCcEEEEEECC------CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEE
Confidence              578999999999      9999999999999999999854333222 22345678999999987          5666


Q ss_pred             EeeeeeeccC---eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC
Q 025649          143 EMEILDQSGG---KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN  219 (250)
Q Consensus       143 ~~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  219 (250)
                      + +..|....   ...+....+.+|...|.+++|+   |+|++|++|+.||.|++||+....        .. .....+.
T Consensus       189 s-~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s---~~g~~l~sgs~dg~v~iwd~~~~~--------~~-~~~~~~~  255 (343)
T 2xzm_R          189 S-VGWDGRLKVWNTNFQIRYTFKAHESNVNHLSIS---PNGKYIATGGKDKKLLIWDILNLT--------YP-QREFDAG  255 (343)
T ss_dssp             E-EETTSEEEEEETTTEEEEEEECCSSCEEEEEEC---TTSSEEEEEETTCEEEEEESSCCS--------SC-SEEEECS
T ss_pred             E-EcCCCEEEEEcCCCceeEEEcCccccceEEEEC---CCCCEEEEEcCCCeEEEEECCCCc--------cc-ceeecCC
Confidence            3 33222210   1223455778999999999999   899999999999999999996542        11 1223456


Q ss_pred             CceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          220 KKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       220 ~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ..|.+++|+| ++++++ ++.|+.|++||+
T Consensus       256 ~~v~~v~~sp-~~~~la-~~~d~~v~iw~~  283 (343)
T 2xzm_R          256 STINQIAFNP-KLQWVA-VGTDQGVKIFNL  283 (343)
T ss_dssp             SCEEEEEECS-SSCEEE-EEESSCEEEEES
T ss_pred             CcEEEEEECC-CCCEEE-EECCCCEEEEEe
Confidence            6799999998 777665 455888999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.4e-35  Score=220.24  Aligned_cols=209  Identities=19%  Similarity=0.249  Sum_probs=170.7

Q ss_pred             cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC-----CccceecCCCCCCCCCCcccCCCceeEE
Q 025649            9 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-----PNKIVNFGLPENNGNAGQCYNPAFVHAI   83 (250)
Q Consensus         9 ~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~   83 (250)
                      +..+..+|. +|.+.|.+++|+|++..+|++|+.|++|++||+....     ++..+. +            |...|.++
T Consensus         6 ~~~l~~~l~-gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~------------h~~~v~~~   71 (319)
T 3frx_A            6 VLVLRGTLE-GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-G------------HSHIVQDC   71 (319)
T ss_dssp             EEEEEEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-C------------CSSCEEEE
T ss_pred             EEEEEEEEc-cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-C------------CcccEEEE
Confidence            345667889 9999999999999774489999999999999986533     233343 2            67899999


Q ss_pred             ecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----cCeeeeeec
Q 025649           84 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLHLDY  159 (250)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  159 (250)
                      +|+|      ++++|++++.|++|++||+++++....+..+ ...+.+++|+|++.++++ +..|..    +.. .+.+.
T Consensus        72 ~~s~------dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s-~s~D~~i~vwd~~-~~~~~  142 (319)
T 3frx_A           72 TLTA------DGAYALSASWDKTLRLWDVATGETYQRFVGH-KSDVMSVDIDKKASMIIS-GSRDKTIKVWTIK-GQCLA  142 (319)
T ss_dssp             EECT------TSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTSCEEEE-EETTSCEEEEETT-SCEEE
T ss_pred             EECC------CCCEEEEEeCCCEEEEEECCCCCeeEEEccC-CCcEEEEEEcCCCCEEEE-EeCCCeEEEEECC-CCeEE
Confidence            9999      9999999999999999999999887776654 478999999999999984 333222    221 23556


Q ss_pred             cccCccccEEEEEeecCC---CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          160 SVGGHTAAASCVAFSMFG---ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       160 ~~~~h~~~v~~~~~~p~~---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      .+.+|...|.++.|+|..   +++.++++++.|+.|++||+++.         .....+.+|...|.+++|+| ++++|+
T Consensus       143 ~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---------~~~~~~~~h~~~v~~~~~sp-~g~~l~  212 (319)
T 3frx_A          143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF---------QIEADFIGHNSNINTLTASP-DGTLIA  212 (319)
T ss_dssp             EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT---------EEEEEECCCCSCEEEEEECT-TSSEEE
T ss_pred             EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc---------hhheeecCCCCcEEEEEEcC-CCCEEE
Confidence            778999999999999421   13558999999999999999987         55667789999999999998 899999


Q ss_pred             EeeCCceEEEEeCC
Q 025649          237 VCDTSKVVKVYSIS  250 (250)
Q Consensus       237 s~~~d~~i~vw~~~  250 (250)
                      +|+.||.|++||++
T Consensus       213 s~~~dg~i~iwd~~  226 (319)
T 3frx_A          213 SAGKDGEIMLWNLA  226 (319)
T ss_dssp             EEETTCEEEEEETT
T ss_pred             EEeCCCeEEEEECC
Confidence            99999999999974

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.1e-34  Score=216.34  Aligned_cols=215  Identities=16%  Similarity=0.194  Sum_probs=176.9

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+.+++....+. +|...|.+++|+|+++ +|++|+.|+.|++||+++++.+..+..             |...|
T Consensus        46 ~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~-------------~~~~v  110 (312)
T 4ery_A           46 LIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKG-------------HSNYV  110 (312)
T ss_dssp             CEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEEC-------------CSSCE
T ss_pred             eEEEEeCCCcccchhhc-cCCCceEEEEEcCCCC-EEEEECCCCEEEEEECCCCcEEEEEcC-------------CCCCE
Confidence            58999999999999999 9999999999999999 899999999999999999988877763             46789


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLH  156 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  156 (250)
                      .+++|+|      ++++|++++.|+.|++||+++++....+..+ ...+.++.|+|+++++++ +..+.    ++....+
T Consensus       111 ~~~~~~~------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~  182 (312)
T 4ery_A          111 FCCNFNP------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQ  182 (312)
T ss_dssp             EEEEECS------SSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEE-EETTSCEEEEETTTCC
T ss_pred             EEEEEcC------CCCEEEEEeCCCcEEEEECCCCEEEEEecCC-CCcEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCc
Confidence            9999999      9999999999999999999998877666544 467999999999999884 33222    2222223


Q ss_pred             eeccc-cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee--EEEecCCCCC
Q 025649          157 LDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN--WLCTTPTESE  233 (250)
Q Consensus       157 ~~~~~-~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~  233 (250)
                      .+..+ ..+...+.+++|+   |++++|++++.|+.|++||++++         +.+..+.+|...+.  ...+++.++.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (312)
T 4ery_A          183 CLKTLIDDDNPPVSFVKFS---PNGKYILAATLDNTLKLWDYSKG---------KCLKTYTGHKNEKYCIFANFSVTGGK  250 (312)
T ss_dssp             EEEEECCSSCCCEEEEEEC---TTSSEEEEEETTTEEEEEETTTT---------EEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred             eeeEEeccCCCceEEEEEC---CCCCEEEEEcCCCeEEEEECCCC---------cEEEEEEecCCceEEEEEEEEeCCCc
Confidence            33333 4566789999999   89999999999999999999997         55566667766533  3345556888


Q ss_pred             eEEEeeCCceEEEEeCC
Q 025649          234 NLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       234 ~l~s~~~d~~i~vw~~~  250 (250)
                      +|++|+.||.|++||++
T Consensus       251 ~l~sg~~dg~i~vwd~~  267 (312)
T 4ery_A          251 WIVSGSEDNLVYIWNLQ  267 (312)
T ss_dssp             EEEECCTTSCEEEEETT
T ss_pred             EEEEECCCCEEEEEECC
Confidence            99999999999999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.1e-34  Score=236.26  Aligned_cols=228  Identities=15%  Similarity=0.163  Sum_probs=172.0

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCC--------------
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE--------------   66 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--------------   66 (250)
                      +|++||.++++....+. +|...|.+++|+|+++ +|++++.|++|++||+.+++....+..+...              
T Consensus       305 ~i~~~~~~~~~~~~~~~-gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~  382 (611)
T 1nr0_A          305 FINFVNPELGSIDQVRY-GHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF  382 (611)
T ss_dssp             CEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE
T ss_pred             cEEEEeCCCCCcceEEc-CCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEE
Confidence            47899999999888898 9999999999999999 8999999999999999877644332100000              


Q ss_pred             -----------------CCC-----------CCC---------------------------cccCCCceeEEecCCCccc
Q 025649           67 -----------------NNG-----------NAG---------------------------QCYNPAFVHAIAIPDADML   91 (250)
Q Consensus        67 -----------------~~~-----------~~~---------------------------~~~~~~~v~~~~~~~~~~~   91 (250)
                                       ...           ...                           ...+...+.+++|+|    
T Consensus       383 s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp----  458 (611)
T 1nr0_A          383 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN----  458 (611)
T ss_dssp             EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT----
T ss_pred             EEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC----
Confidence                             000           000                           001234567889998    


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeeeccCeeeeeecc--ccC
Q 025649           92 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQSGGKRLHLDYS--VGG  163 (250)
Q Consensus        92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~  163 (250)
                        ++++|++|+.|++|++||+.++.........+...+.+++|+|+|+++++.      ..|+....  .+.+..  +.+
T Consensus       459 --dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~--~~~~~~~~~~~  534 (611)
T 1nr0_A          459 --DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN--FELAHTNSWTF  534 (611)
T ss_dssp             --TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT--TEESCCCCCCC
T ss_pred             --CCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC--Cceeeeeeeee
Confidence              999999999999999999987654321113445789999999999999842      22333221  222222  345


Q ss_pred             ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-CCceeEEEecCCCCCeEEEeeCCc
Q 025649          164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTSK  242 (250)
Q Consensus       164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~  242 (250)
                      |...|.+++|+   |+|++|++|+.|++|++||+..+..       ..+....+| ...|.+++|+| +++ |++++.|+
T Consensus       535 H~~~V~~v~fs---pdg~~lasgs~D~~v~lW~~~~~~~-------~~~~~~~~h~~~~v~~v~fs~-d~~-l~s~~~D~  602 (611)
T 1nr0_A          535 HTAKVACVSWS---PDNVRLATGSLDNSVIVWNMNKPSD-------HPIIIKGAHAMSSVNSVIWLN-ETT-IVSAGQDS  602 (611)
T ss_dssp             CSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTCTTS-------CCEEETTSSTTSCEEEEEEEE-TTE-EEEEETTS
T ss_pred             cccceeEEEEC---CCCCEEEEEECCCcEEEEECCCccc-------ccchhhccCcccCeeEEEEcC-CCE-EEEecCCC
Confidence            99999999999   8999999999999999999987631       122455688 88999999998 777 99999999


Q ss_pred             eEEEEeCC
Q 025649          243 VVKVYSIS  250 (250)
Q Consensus       243 ~i~vw~~~  250 (250)
                      +|++|+++
T Consensus       603 ~i~lW~~~  610 (611)
T 1nr0_A          603 NIKFWNVP  610 (611)
T ss_dssp             CEEEEECC
T ss_pred             CEEEEecc
Confidence            99999974

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.5e-35  Score=226.37  Aligned_cols=223  Identities=19%  Similarity=0.236  Sum_probs=171.2

Q ss_pred             CcEEEEcccce-------eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649            1 MWQIIDIRQHC-------LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         1 ti~iwd~~~~~-------~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~   73 (250)
                      +|++||+.+..       ....+. +|.+.|.++.|+|++...|++|+.|++|++||+++++.+..+...        ..
T Consensus       131 ~v~iw~~~~~~~~~~~~~~~~~~~-gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~--------~~  201 (380)
T 3iz6_a          131 ACSIFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE--------FP  201 (380)
T ss_dssp             CCEEEECCCCSSCCCSSTTCCBCC-CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC--------SS
T ss_pred             cEEEEECCCCccccCCccceeecc-CCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc--------cC
Confidence            57899986532       345677 999999999999986547999999999999999999877666321        11


Q ss_pred             ccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc-eeEeeccCCCCCCccceeecccceeEEE------eee
Q 025649           74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE-LNISRSKSTTKPLKGSQSTSKVNIRDAE------MEI  146 (250)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  146 (250)
                      ..|...|.++.++|     .+++++++|+.|+.|++||++.. .....+. .+...+.+++|+|++.++++      +..
T Consensus       202 ~~h~~~v~~~~~~~-----~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~i~l  275 (380)
T 3iz6_a          202 SGHTADVLSLSINS-----LNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQRFGTGSDDGTCRL  275 (380)
T ss_dssp             SSCCSCEEEEEECS-----SSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSSEEEEECSSSCEEE
T ss_pred             CCCccCeEEEEeec-----CCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCCeEEEEcCCCeEEE
Confidence            12677899999986     58899999999999999999854 3333333 34578999999999999985      223


Q ss_pred             eeeccCeeeeeeccccC-------ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC
Q 025649          147 LDQSGGKRLHLDYSVGG-------HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN  219 (250)
Q Consensus       147 ~~~~~~~~~~~~~~~~~-------h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  219 (250)
                      ||......   +..+..       +...|.+++|+   |+|++|++|+.||.|++||+..+....     .+.....+|.
T Consensus       276 wd~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~~g~~dg~i~vwd~~~~~~~~-----~~~~~~~~h~  344 (380)
T 3iz6_a          276 FDMRTGHQ---LQVYNREPDRNDNELPIVTSVAFS---ISGRLLFAGYSNGDCYVWDTLLAEMVL-----NLGTLQNSHE  344 (380)
T ss_dssp             EETTTTEE---EEEECCCCSSSCCSSCSCSEEEEC---SSSSEEEEECTTSCEEEEETTTCCEEE-----EECCSCSSCC
T ss_pred             EECCCCcE---EEEecccccccccccCceEEEEEC---CCCCEEEEEECCCCEEEEECCCCceEE-----EEecccCCCC
Confidence            44433332   223322       23458999999   899999999999999999998873221     1111125799


Q ss_pred             CceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          220 KKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       220 ~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ..|.+++|+| ++++|++|+.|+.|++|+++
T Consensus       345 ~~v~~l~~s~-dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          345 GRISCLGLSS-DGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             CCCCEEEECS-SSSEEEEECTTSCEEEEECC
T ss_pred             CceEEEEECC-CCCEEEEeeCCCCEEEEecC
Confidence            9999999998 89999999999999999974

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.3e-34  Score=218.52  Aligned_cols=224  Identities=12%  Similarity=0.172  Sum_probs=175.2

Q ss_pred             CcEEEEcccc----eeeeeeccCCCCCeeeEEEcC--CCCeEEEEecCCCeEEEEEccCCCC---------ccceecCCC
Q 025649            1 MWQIIDIRQH----CLYKSLRAGHSSICSSVQFIP--WKPWEVISGGLDSKLVMWDFSKGRP---------NKIVNFGLP   65 (250)
Q Consensus         1 ti~iwd~~~~----~~~~~l~~~h~~~v~~l~~~~--~~~~~l~s~s~dg~v~iwd~~~~~~---------~~~~~~~~~   65 (250)
                      +|++||+.++    +....+. +|...|.+++|+|  ++. +|++|+.||.|++||+++++.         +..+.    
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~----  107 (351)
T 3f3f_A           34 HIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGR-IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN----  107 (351)
T ss_dssp             EEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCS-EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC----
T ss_pred             eEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCC-EEEEEcCCCeEEEEecCCCcccccccCcceeeeec----
Confidence            4899999876    5677788 9999999999999  577 899999999999999987743         22222    


Q ss_pred             CCCCCCCcccCCCceeEEecCCCcccCCC--CCEEEEEeCCCeEEEEeCCCceeEeecc------------CCCCCCccc
Q 025649           66 ENNGNAGQCYNPAFVHAIAIPDADMLDKT--NKICVVAKGDGVVDVINIESELNISRSK------------STTKPLKGS  131 (250)
Q Consensus        66 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~------------~~~~~~~~~  131 (250)
                               .|...|.+++|+|      +  +++|++++.||.|++||+++++......            ..+...+.+
T Consensus       108 ---------~~~~~v~~~~~~~------~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (351)
T 3f3f_A          108 ---------DSKGSLYSVKFAP------AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFC  172 (351)
T ss_dssp             ---------CCSSCEEEEEECC------GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEE
T ss_pred             ---------ccCCceeEEEEcC------CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeE
Confidence                     2578899999999      7  9999999999999999998865432221            134567889


Q ss_pred             eeeccc---ceeEEEeeeeee------ccCeeeeeeccccCccccEEEEEeecCCCCC----cEEEEeeCCCeEEEEecC
Q 025649          132 QSTSKV---NIRDAEMEILDQ------SGGKRLHLDYSVGGHTAAASCVAFSMFGERG----KYLISGGNDKLVKVWDCS  198 (250)
Q Consensus       132 ~~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~----~~l~s~~~d~~i~iwd~~  198 (250)
                      +.|+|+   +..+++ +..+.      ........+..+.+|...|.+++|+   |++    ++|++|+.||.|++||++
T Consensus       173 ~~~~p~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~---p~~~~~~~~l~s~~~dg~i~iwd~~  248 (351)
T 3f3f_A          173 LSWCPSRFSPEKLAV-SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWA---PSIGRWYQLIATGCKDGRIRIFKIT  248 (351)
T ss_dssp             EEECCCSSSCCEEEE-EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEEC---CCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred             EEeccCCCCCcEEEE-ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEEC---CCCCCcceEEEEEcCCCeEEEEeCC
Confidence            999997   777774 32222      2223344567788999999999999   787    899999999999999998


Q ss_pred             CCcceec-------------------------------------ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC
Q 025649          199 RFQGVQT-------------------------------------SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS  241 (250)
Q Consensus       199 ~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  241 (250)
                      .+.....                                     ......+..+.+|...|++++|+| ++++|++++.|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d  327 (351)
T 3f3f_A          249 EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGDD  327 (351)
T ss_dssp             ECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEETT
T ss_pred             CCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEEecCC
Confidence            7532110                                     001245566778999999999998 88999999999


Q ss_pred             ceEEEEeCC
Q 025649          242 KVVKVYSIS  250 (250)
Q Consensus       242 ~~i~vw~~~  250 (250)
                      |.|++|+++
T Consensus       328 g~v~iw~~~  336 (351)
T 3f3f_A          328 GKVRLWKAT  336 (351)
T ss_dssp             SCEEEEEEC
T ss_pred             CcEEEEecC
Confidence            999999974

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.5e-35  Score=227.14  Aligned_cols=216  Identities=17%  Similarity=0.262  Sum_probs=171.8

Q ss_pred             EEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeE
Q 025649            3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA   82 (250)
Q Consensus         3 ~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   82 (250)
                      ..|+..+..+...|+ +|.+.|++++|+|+++ +|+||+.||+|++||+.+++....+..             |...|.+
T Consensus        49 ~~~~~~~~~~~~~l~-gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~-------------h~~~v~~  113 (380)
T 3iz6_a           49 VSFNPTDLVCCRTLQ-GHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHAIKL-------------HCPWVME  113 (380)
T ss_dssp             CCCCCCCCEEEEEEC-CCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEEEEC-------------CCTTCCC
T ss_pred             cccccceeEEeeccc-ccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceEEec-------------CCCCEEE
Confidence            346667778888999 9999999999999999 899999999999999999888877763             4678999


Q ss_pred             EecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee------EeeccCCCCCCccceeecccce-eEEE------eeeeee
Q 025649           83 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELN------ISRSKSTTKPLKGSQSTSKVNI-RDAE------MEILDQ  149 (250)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~  149 (250)
                      ++|+|      ++++|++|+.|+.+++||+.+...      .......+...+.++.|.|++. .+++      +..||.
T Consensus       114 ~~~s~------~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~  187 (380)
T 3iz6_a          114 CAFAP------NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV  187 (380)
T ss_dssp             CEECT------TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT
T ss_pred             EEECC------CCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc
Confidence            99999      999999999999999999975321      1122234457788899999754 4553      223333


Q ss_pred             ccCeeeeee--ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEe
Q 025649          150 SGGKRLHLD--YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT  227 (250)
Q Consensus       150 ~~~~~~~~~--~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  227 (250)
                      .........  ....+|...|.++.|+|  +++++|++|+.|+.|++||++...        ..+..+.+|...|++++|
T Consensus       188 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~sgs~D~~v~~wd~~~~~--------~~~~~~~~h~~~v~~v~~  257 (380)
T 3iz6_a          188 TTGQRISIFGSEFPSGHTADVLSLSINS--LNANMFISGSCDTTVRLWDLRITS--------RAVRTYHGHEGDINSVKF  257 (380)
T ss_dssp             TTCCEEEEECCCSSSSCCSCEEEEEECS--SSCCEEEEEETTSCEEEEETTTTC--------CCCEEECCCSSCCCEEEE
T ss_pred             CCCcEEEEeecccCCCCccCeEEEEeec--CCCCEEEEEECCCeEEEEECCCCC--------cceEEECCcCCCeEEEEE
Confidence            333222211  11267999999999984  588999999999999999998532        455677899999999999


Q ss_pred             cCCCCCeEEEeeCCceEEEEeCC
Q 025649          228 TPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       228 ~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +| ++++|++|+.||+|++||++
T Consensus       258 ~p-~~~~l~s~s~D~~i~lwd~~  279 (380)
T 3iz6_a          258 FP-DGQRFGTGSDDGTCRLFDMR  279 (380)
T ss_dssp             CT-TSSEEEEECSSSCEEEEETT
T ss_pred             ec-CCCeEEEEcCCCeEEEEECC
Confidence            98 89999999999999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-34  Score=217.52  Aligned_cols=218  Identities=12%  Similarity=0.095  Sum_probs=158.4

Q ss_pred             CcEEEEccc-------ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-C---CccceecCCCCCCC
Q 025649            1 MWQIIDIRQ-------HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-R---PNKIVNFGLPENNG   69 (250)
Q Consensus         1 ti~iwd~~~-------~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~---~~~~~~~~~~~~~~   69 (250)
                      +|+|||++.       .+.+..+. +|...|.+++|+|+++ +|++|+.|++|++||++.. +   ++..+. +      
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~------  151 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQ-E------  151 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEEC-C------
T ss_pred             cEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEec-c------
Confidence            589999853       45677888 9999999999999999 8999999999999999533 2   233333 2      


Q ss_pred             CCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc--eeEeeccCCCCCCccceeeccc--ceeEEE--
Q 025649           70 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE--LNISRSKSTTKPLKGSQSTSKV--NIRDAE--  143 (250)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--  143 (250)
                            |...|.+++|+|      ++++|++++.|++|++||...+  +....+. .+...+.+++|+|+  +..+++  
T Consensus       152 ------h~~~v~~v~~~p------~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s  218 (330)
T 2hes_X          152 ------HSQDVKHVIWHP------SEALLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTEGVFRLCSGS  218 (330)
T ss_dssp             ------CSSCEEEEEECS------SSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSSSSCEEEEEE
T ss_pred             ------CCCceEEEEECC------CCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCCCeeEEEEEe
Confidence                  678899999999      9999999999999999998775  3344443 34578999999998  566663  


Q ss_pred             ----eeeeeeccC-----eeeeeeccccC-ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceee
Q 025649          144 ----MEILDQSGG-----KRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI  213 (250)
Q Consensus       144 ----~~~~~~~~~-----~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  213 (250)
                          +..|+....     ....+...+.+ |...|.+++|+   +++ +|++++.||.|++||..++...      ....
T Consensus       219 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~-~l~s~~~dg~v~iw~~~~~~~~------~~~~  288 (330)
T 2hes_X          219 DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG---FNG-LIASVGADGVLAVYEEVDGEWK------VFAK  288 (330)
T ss_dssp             TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC---TTS-CEEEEETTSCEEEEEEETTEEE------EEEE
T ss_pred             CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc---CCC-EEEEEeCCCEEEEEEcCCCceE------EEec
Confidence                223333211     11133445554 89999999999   654 8999999999999998875211      1222


Q ss_pred             eeeccCC-ceeEEEecCC-CCCeEEEeeCCceEEEEeCC
Q 025649          214 KNINLNK-KVNWLCTTPT-ESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       214 ~~~~~~~-~v~~~~~~~~-~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ...+|.. .|.+++|+|. ++++|++|+.||.|++||++
T Consensus       289 ~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          289 RALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             ESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred             cccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence            3357877 8999999985 67899999999999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-34  Score=216.75  Aligned_cols=210  Identities=14%  Similarity=0.059  Sum_probs=163.7

Q ss_pred             ccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC--CccceecCCCCCCCCCCcccCCCceeEEec
Q 025649            8 RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR--PNKIVNFGLPENNGNAGQCYNPAFVHAIAI   85 (250)
Q Consensus         8 ~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   85 (250)
                      .+.+++..++ +|.+.|.+++|+|+   +|++|+.|++|++||+..+.  .+..+..+           .|...|.+++|
T Consensus         2 ~~~~~~~~~~-~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~-----------~h~~~v~~v~~   66 (330)
T 2hes_X            2 ASINLIKSLK-LYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDET-----------AHKKAIRSVAW   66 (330)
T ss_dssp             -CCEEEEEEE-CCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTT-----------CCCSCEEEEEE
T ss_pred             cccccceeec-cCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecC-----------CccCCEEEEEE
Confidence            3567788999 99999999999987   79999999999999998753  22333111           16788999999


Q ss_pred             CCCcccCCCCCEEEEEeCCCeEEEEeCCCc-------eeEeeccCCCCCCccceeecccceeEEE------eeeeeecc-
Q 025649           86 PDADMLDKTNKICVVAKGDGVVDVINIESE-------LNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSG-  151 (250)
Q Consensus        86 ~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-  151 (250)
                      +|      ++++|++++.|++|++||++..       +....+. .+...+.+++|+|+++++++      +..|+... 
T Consensus        67 sp------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~  139 (330)
T 2hes_X           67 RP------HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES  139 (330)
T ss_dssp             CT------TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred             CC------CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence            99      9999999999999999999642       2223333 34578999999999999985      22344422 


Q ss_pred             CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649          152 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE  231 (250)
Q Consensus       152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  231 (250)
                      ....+++..+.+|...|.+++|+   |++++|++|+.|++|++||...+..       +++..+.+|...|.+++|+|..
T Consensus       140 ~~~~~~~~~~~~h~~~v~~v~~~---p~~~~l~s~s~D~~i~iW~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~  209 (330)
T 2hes_X          140 GEEYECISVLQEHSQDVKHVIWH---PSEALLASSSYDDTVRIWKDYDDDW-------ECVAVLNGHEGTVWSSDFDKTE  209 (330)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEEC---SSSSEEEEEETTSCEEEEEEETTEE-------EEEEEECCCSSCEEEEEECCSS
T ss_pred             CCCeEEEEEeccCCCceEEEEEC---CCCCEEEEEcCCCeEEEEECCCCCe-------eEEEEccCCCCcEEEEEecCCC
Confidence            23345667888999999999999   8999999999999999999876421       3556778999999999999832


Q ss_pred             -CCeEEEeeCCceEEEEeC
Q 025649          232 -SENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       232 -~~~l~s~~~d~~i~vw~~  249 (250)
                       +.+|++|+.|++|++||+
T Consensus       210 ~~~~l~s~s~D~~v~iw~~  228 (330)
T 2hes_X          210 GVFRLCSGSDDSTVRVWKY  228 (330)
T ss_dssp             SSCEEEEEETTSCEEEEEE
T ss_pred             CeeEEEEEeCCCeEEEEEe
Confidence             568999999999999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.1e-34  Score=212.84  Aligned_cols=211  Identities=11%  Similarity=0.120  Sum_probs=160.9

Q ss_pred             eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC--CCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649           14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML   91 (250)
Q Consensus        14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   91 (250)
                      ..+. +|.+.|.+++|+|+++ +|++|+.|++|++||+...  +.+..+. +            |...|.+++|+|    
T Consensus         3 ~~~~-~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~l~-g------------H~~~V~~v~~s~----   63 (297)
T 2pm7_B            3 VIAN-AHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDTLT-G------------HEGPVWRVDWAH----   63 (297)
T ss_dssp             EECC-SCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEEEC-C------------CSSCEEEEEECC----
T ss_pred             eecc-CCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEEEc-c------------ccCCeEEEEecC----
Confidence            4567 9999999999999999 8999999999999999743  4555554 3            688999999986    


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCcee--EeeccCCCCCCccceeeccc--ceeEEE------eeeeeeccCeeeeeeccc
Q 025649           92 DKTNKICVVAKGDGVVDVINIESELN--ISRSKSTTKPLKGSQSTSKV--NIRDAE------MEILDQSGGKRLHLDYSV  161 (250)
Q Consensus        92 ~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~  161 (250)
                      +.++++|++|+.|++|++||+++++.  .... ..+...+.+++|+|+  +.++++      +..|+....... ....+
T Consensus        64 ~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~-~~~~~  141 (297)
T 2pm7_B           64 PKFGTILASCSYDGKVMIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-SPIII  141 (297)
T ss_dssp             GGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-CCEEE
T ss_pred             CCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-eeeee
Confidence            12489999999999999999998642  2222 234578999999997  777773      223333222111 13456


Q ss_pred             cCccccEEEEEeecCC----------CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649          162 GGHTAAASCVAFSMFG----------ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE  231 (250)
Q Consensus       162 ~~h~~~v~~~~~~p~~----------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  231 (250)
                      .+|...|.+++|+|..          +++++|++|+.|++|++||++++....     .+...+.+|...|.+++|+|..
T Consensus       142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~-----~~~~~l~~H~~~V~~v~~sp~~  216 (297)
T 2pm7_B          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-----VLESTLEGHSDWVRDVAWSPTV  216 (297)
T ss_dssp             ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE-----EEEEEECCCSSCEEEEEECCCC
T ss_pred             ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE-----EEEEEecCCCCceEEEEECCCC
Confidence            7899999999999311          025799999999999999998763211     2445678999999999999832


Q ss_pred             --CCeEEEeeCCceEEEEeCC
Q 025649          232 --SENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       232 --~~~l~s~~~d~~i~vw~~~  250 (250)
                        +.+|++++.|++|++||++
T Consensus       217 ~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          217 LLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             SSSEEEEEEETTSCEEEEEES
T ss_pred             CCceEEEEEECCCcEEEEEeC
Confidence              5789999999999999863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3e-34  Score=232.28  Aligned_cols=207  Identities=21%  Similarity=0.279  Sum_probs=174.2

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||. +++.+..+. +|...|.+++|+|+++ +|++++.|+.|++||. +++.+..+. +            |...|
T Consensus       367 ~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~-~~~~~~~~~-~------------~~~~v  429 (577)
T 2ymu_A          367 TVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLT-G------------HSSSV  429 (577)
T ss_dssp             EEEEEET-TCCEEEEEE-CCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TCCEEEEEE-C------------CSSCE
T ss_pred             EEEEEcC-CCCEEEEec-CCCCCeEEEEECCCCC-EEEEEeCCCEEEEEeC-CCCEEEEec-C------------CCCCe
Confidence            4789995 678888999 9999999999999999 8999999999999996 466666655 2            57889


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLH  156 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  156 (250)
                      .+++|+|      ++++|++++.|+.|++||... +....+.. +...+.+++|+|+++++++ +..|    .++ ...+
T Consensus       430 ~~~~~s~------d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~-~~~~v~~~~~spd~~~las-~~~d~~i~iw~-~~~~  499 (577)
T 2ymu_A          430 WGVAFSP------DDQTIASASDDKTVKLWNRNG-QLLQTLTG-HSSSVRGVAFSPDGQTIAS-ASDDKTVKLWN-RNGQ  499 (577)
T ss_dssp             EEEEECT------TSSEEEEEETTSEEEEEETTS-CEEEEEEC-CSSCEEEEEECTTSCEEEE-EETTSEEEEEE-TTSC
T ss_pred             EEEEECC------CCCEEEEEcCCCEEEEEECCC-CEEEEEcC-CCCCEEEEEEcCCCCEEEE-EeCCCEEEEEc-CCCC
Confidence            9999999      999999999999999999754 44444433 3478999999999999985 2222    122 2334


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      ++..+.+|...|++++|+   |+|++|++++.||.|++||.. +         +++..+.+|...|++++|+| |+++|+
T Consensus       500 ~~~~~~~h~~~v~~l~~s---~dg~~l~s~~~dg~v~lwd~~-~---------~~~~~~~~h~~~v~~~~fs~-dg~~l~  565 (577)
T 2ymu_A          500 LLQTLTGHSSSVRGVAFS---PDGQTIASASDDKTVKLWNRN-G---------QLLQTLTGHSSSVWGVAFSP-DGQTIA  565 (577)
T ss_dssp             EEEEEECCSSCEEEEEEC---TTSSCEEEEETTSEEEEECTT-S---------CEEEEEECCSSCEEEEEECT-TSSCEE
T ss_pred             EEEEEeCCCCCEEEEEEc---CCCCEEEEEECcCEEEEEeCC-C---------CEEEEEcCCCCCEEEEEEcC-CCCEEE
Confidence            567888999999999999   899999999999999999964 3         56678889999999999998 899999


Q ss_pred             EeeCCceEEEEe
Q 025649          237 VCDTSKVVKVYS  248 (250)
Q Consensus       237 s~~~d~~i~vw~  248 (250)
                      +++.|++|++||
T Consensus       566 s~~~D~~i~~Wd  577 (577)
T 2ymu_A          566 SASSDKTVKLWN  577 (577)
T ss_dssp             EEETTSCEEEEC
T ss_pred             EEeCCCEEEEeC
Confidence            999999999997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.3e-34  Score=222.89  Aligned_cols=215  Identities=15%  Similarity=0.170  Sum_probs=174.8

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+++++....+. +|...|.+++|+|+++ +|++|+.|++|++||+++++.+..+. +            |...|
T Consensus       120 ~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~-~------------h~~~v  184 (420)
T 3vl1_A          120 DIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLI-G------------HRATV  184 (420)
T ss_dssp             CEEEECTTSCEEEEETT-SSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEE-C------------CSSCE
T ss_pred             CEEEEeCCCcceeeecc-cccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEc-C------------CCCcE
Confidence            58999999999998888 9999999999999999 89999999999999999998888776 3            57899


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC-----------------------CCCCccceeeccc
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-----------------------TKPLKGSQSTSKV  137 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~  137 (250)
                      .+++|+|      ++++|++++.|+.|++||+++++....+...                       ....+.+++|+|+
T Consensus       185 ~~~~~~~------~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  258 (420)
T 3vl1_A          185 TDIAIID------RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY  258 (420)
T ss_dssp             EEEEEET------TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT
T ss_pred             EEEEEcC------CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC
Confidence            9999999      9999999999999999999998877665532                       1356778889999


Q ss_pred             ceeEEEeeeeee----ccCeeeeeecc-ccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccce
Q 025649          138 NIRDAEMEILDQ----SGGKRLHLDYS-VGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDL  211 (250)
Q Consensus       138 ~~~~~~~~~~~~----~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  211 (250)
                      ++++++ +..+.    ++....+.+.. ...|...|.+++|+   |+++ +|++|+.||.|++||++++.        .+
T Consensus       259 ~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~g~~dg~i~vwd~~~~~--------~~  326 (420)
T 3vl1_A          259 GKYVIA-GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVD---GNNANYIYAGYENGMLAQWDLRSPE--------CP  326 (420)
T ss_dssp             TEEEEE-EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEEC---SSCTTEEEEEETTSEEEEEETTCTT--------SC
T ss_pred             CCEEEE-EcCCCeEEEEECCCCceeEEcccccCCCceeEEEe---CCCCCEEEEEeCCCeEEEEEcCCCc--------Cc
Confidence            999984 32222    22222222223 34688899999999   7888 99999999999999999863        22


Q ss_pred             eeeeec-cCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          212 LIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       212 ~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +..+.. |...+..+.+ + ++++|++++.|+.|++|+++
T Consensus       327 ~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          327 VGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             SEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEEC
T ss_pred             hhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEecc
Confidence            344555 6677887755 4 67799999999999999963

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.2e-34  Score=218.93  Aligned_cols=207  Identities=17%  Similarity=0.212  Sum_probs=170.8

Q ss_pred             eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649           11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM   90 (250)
Q Consensus        11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   90 (250)
                      +....++ +|.+.|.+++|+|+++ +|+||+.||+|++||..+++....+..+             ...|.+++|+|   
T Consensus        55 ~~~~~l~-gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~~~~~-------------~~~v~~~~~sp---  116 (354)
T 2pbi_B           55 KTRRTLK-GHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHAVTMP-------------CTWVMACAYAP---  116 (354)
T ss_dssp             CEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECS-------------SSCCCEEEECT---
T ss_pred             EEEEEec-CCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceEEecC-------------CCCEEEEEECC---
Confidence            4567788 9999999999999999 8999999999999999888877766633             56799999999   


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCce------eEeeccCCCCCCccceeecccceeEEEe---eeeeeccCeeeeeeccc
Q 025649           91 LDKTNKICVVAKGDGVVDVINIESEL------NISRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSGGKRLHLDYSV  161 (250)
Q Consensus        91 ~~~~~~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  161 (250)
                         ++.++++++.|+.+++|++....      ....+ ..+...+.++.|+|++..+++.   +....++....+.+..+
T Consensus       117 ---~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~  192 (354)
T 2pbi_B          117 ---SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF  192 (354)
T ss_dssp             ---TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ---CCCEEEEeeCCCCEEEEEEeccccccccccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence               99999999999999999987532      11112 2245778999999999988842   12233344455567788


Q ss_pred             cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC
Q 025649          162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS  241 (250)
Q Consensus       162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  241 (250)
                      .+|...|.+++|+|. +++++|++|+.||.|++||++++         ..+..+.+|...|++++|+| ++.+|++|+.|
T Consensus       193 ~~h~~~v~~~~~~~~-~~g~~l~sgs~Dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D  261 (354)
T 2pbi_B          193 HGHGADVLCLDLAPS-ETGNTFVSGGCDKKAMVWDMRSG---------QCVQAFETHESDVNSVRYYP-SGDAFASGSDD  261 (354)
T ss_dssp             ECCSSCEEEEEECCC-SSCCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             cCCCCCeEEEEEEeC-CCCCEEEEEeCCCeEEEEECCCC---------cEEEEecCCCCCeEEEEEeC-CCCEEEEEeCC
Confidence            999999999999831 25789999999999999999997         56667789999999999998 88999999999


Q ss_pred             ceEEEEeCC
Q 025649          242 KVVKVYSIS  250 (250)
Q Consensus       242 ~~i~vw~~~  250 (250)
                      +.|++||++
T Consensus       262 ~~v~lwd~~  270 (354)
T 2pbi_B          262 ATCRLYDLR  270 (354)
T ss_dssp             SCEEEEETT
T ss_pred             CeEEEEECC
Confidence            999999974

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.4e-34  Score=221.11  Aligned_cols=219  Identities=9%  Similarity=0.039  Sum_probs=161.6

Q ss_pred             cEEEEcccceeee----eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649            2 WQIIDIRQHCLYK----SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         2 i~iwd~~~~~~~~----~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      |++|+..+++...    ... +|...|.+++|+|++.  +++++.||+|++||+.+++........         ...|.
T Consensus        72 v~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~s~d~~--~l~~s~dg~v~lWd~~~~~~~~~~~~~---------~~~h~  139 (357)
T 4g56_B           72 IWVFKDPEGAPNESLCTAGV-QTEAGVTDVAWVSEKG--ILVASDSGAVELWEILEKESLLVNKFA---------KYEHD  139 (357)
T ss_dssp             EEEESSCC---CGGGCSEEE-ECSSCEEEEEEETTTE--EEEEETTSCEEEC--------CCCCEE---------ECCCS
T ss_pred             EEEEECCCCCcceeEecccC-CCCCCEEEEEEcCCCC--EEEEECCCEEEEeeccccceeEEEeec---------cCCCC
Confidence            6788877665432    334 6999999999999985  667888999999999887754433211         11267


Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCe
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGK  153 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  153 (250)
                      ..|.+++|+|      ++++|++++.|+.|++||+++++....+..+ ...+.+++|+|++..++..+..|    .++..
T Consensus       140 ~~V~~v~~sp------dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~  212 (357)
T 4g56_B          140 DIVKTLSVFS------DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH-SSEVNCVAACPGKDTIFLSCGEDGRILLWDTR  212 (357)
T ss_dssp             SCEEEEEECS------SSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTCSSCEEEEETTSCEEECCTT
T ss_pred             CCEEEEEECC------CCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-CCCEEEEEEccCCCceeeeeccCCceEEEECC
Confidence            8999999999      9999999999999999999999888777654 47899999999986443233332    22333


Q ss_pred             eeeeec--cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649          154 RLHLDY--SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE  231 (250)
Q Consensus       154 ~~~~~~--~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  231 (250)
                      ..+...  .+..|...+.+++|+|  .++.+|++|+.|+.|++||++++         +.+..+.+|...|++++|+|.+
T Consensus       213 ~~~~~~~~~~~~~~~~v~~v~~sp--~~~~~la~g~~d~~i~~wd~~~~---------~~~~~~~~~~~~v~~l~~sp~~  281 (357)
T 4g56_B          213 KPKPATRIDFCASDTIPTSVTWHP--EKDDTFACGDETGNVSLVNIKNP---------DSAQTSAVHSQNITGLAYSYHS  281 (357)
T ss_dssp             SSSCBCBCCCTTCCSCEEEEEECT--TSTTEEEEEESSSCEEEEESSCG---------GGCEEECCCSSCEEEEEECSSS
T ss_pred             CCceeeeeeeccccccccchhhhh--cccceEEEeecccceeEEECCCC---------cEeEEEeccceeEEEEEEcCCC
Confidence            333322  3345778899999994  24678999999999999999997         5566778999999999999855


Q ss_pred             CCeEEEeeCCceEEEEeCC
Q 025649          232 SENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       232 ~~~l~s~~~d~~i~vw~~~  250 (250)
                      +++|++|+.|++|+|||++
T Consensus       282 ~~~lasgs~D~~i~iwd~~  300 (357)
T 4g56_B          282 SPFLASISEDCTVAVLDAD  300 (357)
T ss_dssp             SCCEEEEETTSCEEEECTT
T ss_pred             CCEEEEEeCCCEEEEEECC
Confidence            5789999999999999974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.8e-33  Score=214.05  Aligned_cols=209  Identities=19%  Similarity=0.242  Sum_probs=164.6

Q ss_pred             eeeeeeccCCCCCeeeEEE-----cC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEe
Q 025649           11 CLYKSLRAGHSSICSSVQF-----IP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA   84 (250)
Q Consensus        11 ~~~~~l~~~h~~~v~~l~~-----~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   84 (250)
                      ++...|+ +|.+.|++++|     ++ +++ +|++|+.|++|++||+.+.+.......      .......|...|.+++
T Consensus        12 ~~~~~l~-gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~~~------~~~~l~~h~~~V~~~~   83 (343)
T 2xzm_R           12 VKRGILE-GHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYFGI------PHKALTGHNHFVSDLA   83 (343)
T ss_dssp             EEEEEEE-CCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBSEE------EEEEECCCSSCEEEEE
T ss_pred             eeeeeec-cchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccccc------ccchhccCCCceEEEE
Confidence            4567888 99999999999     76 788 899999999999999976532111000      0001122678999999


Q ss_pred             cCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeeeccCeeeeee
Q 025649           85 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQSGGKRLHLD  158 (250)
Q Consensus        85 ~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  158 (250)
                      |+|      ++.++++++.|++|++||+++++....+..+ ...+.+++|+|+++++++.      ..|+.. .......
T Consensus        84 ~~~------~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~  155 (343)
T 2xzm_R           84 LSQ------ENCFAISSSWDKTLRLWDLRTGTTYKRFVGH-QSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSS  155 (343)
T ss_dssp             ECS------STTEEEEEETTSEEEEEETTSSCEEEEEECC-CSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEEC
T ss_pred             ECC------CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC-CCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeee
Confidence            998      9999999999999999999998877766554 4789999999999999852      233332 1112222


Q ss_pred             ccccCccccEEEEEeecCCCCC----------cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649          159 YSVGGHTAAASCVAFSMFGERG----------KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT  228 (250)
Q Consensus       159 ~~~~~h~~~v~~~~~~p~~~~~----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  228 (250)
                      ....+|...|.+++|+   |++          .+|++++.|+.|++||...          .....+.+|...|.+++|+
T Consensus       156 ~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~h~~~v~~~~~s  222 (343)
T 2xzm_R          156 AEKENHSDWVSCVRYS---PIMKSANKVQPFAPYFASVGWDGRLKVWNTNF----------QIRYTFKAHESNVNHLSIS  222 (343)
T ss_dssp             CTTTSCSSCEEEEEEC---CCCCSCSCCCSSCCEEEEEETTSEEEEEETTT----------EEEEEEECCSSCEEEEEEC
T ss_pred             ecccCCCceeeeeeec---cccccccccCCCCCEEEEEcCCCEEEEEcCCC----------ceeEEEcCccccceEEEEC
Confidence            3345789999999999   554          7999999999999999543          4556778999999999999


Q ss_pred             CCCCCeEEEeeCCceEEEEeC
Q 025649          229 PTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       229 ~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      | ++++|++|+.||.|++||+
T Consensus       223 ~-~g~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          223 P-NGKYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             T-TSSEEEEEETTCEEEEEES
T ss_pred             C-CCCEEEEEcCCCeEEEEEC
Confidence            8 8999999999999999997

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-34  Score=222.10  Aligned_cols=217  Identities=14%  Similarity=0.055  Sum_probs=167.7

Q ss_pred             CcEEEEcccc--eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC---CccceecCCCCCCCCCCccc
Q 025649            1 MWQIIDIRQH--CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR---PNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         1 ti~iwd~~~~--~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~   75 (250)
                      +|+|||+.++  +.+..+. +|...|.+++|+|+++ +|++++.|++|++||+.+++   ....+. +            
T Consensus        34 ~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~-~l~s~s~d~~v~vwd~~~~~~~~~~~~~~-~------------   98 (377)
T 3dwl_C           34 QVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSN-RIVTCSQDRNAYVYEKRPDGTWKQTLVLL-R------------   98 (377)
T ss_dssp             CBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTC-CEEEEETTSSEEEC------CCCCEEECC-C------------
T ss_pred             EEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEec-c------------
Confidence            5899999988  7888999 9999999999999998 89999999999999999876   222222 2            


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee---EeeccCCCCCCccceeecccceeEEE------eee
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN---ISRSKSTTKPLKGSQSTSKVNIRDAE------MEI  146 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  146 (250)
                      |...|.+++|+|      ++++|++++.|+.|++||+++++.   ...+...+...+.+++|+|+++++++      +..
T Consensus        99 ~~~~v~~~~~~~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~i  172 (377)
T 3dwl_C           99 LNRAATFVRWSP------NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV  172 (377)
T ss_dssp             CSSCEEEEECCT------TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEE
T ss_pred             cCCceEEEEECC------CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEE
Confidence            578899999999      999999999999999999998763   44555546689999999999999984      223


Q ss_pred             eeeccC---------------eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccce
Q 025649          147 LDQSGG---------------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL  211 (250)
Q Consensus       147 ~~~~~~---------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  211 (250)
                      |+....               ...+++..+ +|...|.+++|+   |++++|++++.||.|++||++++....     ..
T Consensus       173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s---p~~~~l~~~~~d~~i~iwd~~~~~~~~-----~~  243 (377)
T 3dwl_C          173 LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS---PSGNALAYAGHDSSVTIAYPSAPEQPP-----RA  243 (377)
T ss_dssp             EEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC---TTSSCEEEEETTTEEC-CEECSTTSCE-----EE
T ss_pred             EEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC---CCCCEEEEEeCCCcEEEEECCCCCCcc-----ee
Confidence            443211               134556667 899999999999   899999999999999999999974311     12


Q ss_pred             eeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          212 LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       212 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +..+.+|...|.+++|+| ++++|++|+.++.+ +|+.
T Consensus       244 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          244 LITVKLSQLPLRSLLWAN-ESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             CCCEECSSSCEEEEEEEE-TTEEEEEESSSSEE-EECC
T ss_pred             eEeecCCCCceEEEEEcC-CCCEEEEEcCCcEE-EEEe
Confidence            567788999999999998 88899998877766 6654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.8e-34  Score=226.16  Aligned_cols=210  Identities=15%  Similarity=0.202  Sum_probs=164.7

Q ss_pred             eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649           12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML   91 (250)
Q Consensus        12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   91 (250)
                      ...... +|...|++|+|+|.+..+||+|+.||+|+|||+.+++....+...           .|...|.+++|+|    
T Consensus       111 ~~~~~~-~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~-----------gH~~~V~~l~f~p----  174 (435)
T 4e54_B          111 ILQKAA-PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI-----------GAGGSITGLKFNP----  174 (435)
T ss_dssp             SCCEEE-ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCC-----------SSSCCCCEEEECS----
T ss_pred             ecccCC-CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEcc-----------CCCCCEEEEEEeC----
Confidence            344556 789999999999965448999999999999999887655544321           1778999999998    


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCceeEeeccC-CCCCCccceeecccceeEEEeeeeeec----cCeeeeeeccccCccc
Q 025649           92 DKTNKICVVAKGDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLHLDYSVGGHTA  166 (250)
Q Consensus        92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~  166 (250)
                       .++++|++++.||+|++||++++........ .....+.+++|+|++.++++ +..+..    +. ..+.+..+.+|..
T Consensus       175 -~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~dg~i~~wd~-~~~~~~~~~~h~~  251 (435)
T 4e54_B          175 -LNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVT-GDNVGNVILLNM-DGKELWNLRMHKK  251 (435)
T ss_dssp             -SCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEE-ECSSSBEEEEES-SSCBCCCSBCCSS
T ss_pred             -CCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEE-EeCCCcEeeecc-CcceeEEEecccc
Confidence             4688999999999999999987654433322 23356788999999999984 332222    11 2245667889999


Q ss_pred             cEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649          167 AASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK  245 (250)
Q Consensus       167 ~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  245 (250)
                      .|.+++|+   |+++ +|++|+.|+.|++||+++....      ..+....+|...|++++|+| ++++|++++.||.|+
T Consensus       252 ~v~~v~~~---p~~~~~~~s~s~d~~v~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~  321 (435)
T 4e54_B          252 KVTHVALN---PCCDWFLATASVDQTVKIWDLRQVRGK------ASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIR  321 (435)
T ss_dssp             CEEEEEEC---TTCSSEEEEEETTSBCCEEETTTCCSS------SCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEE
T ss_pred             eEEeeeec---CCCceEEEEecCcceeeEEeccccccc------ceEEEeeeccccccceeECC-CCCeeEEEcCCCEEE
Confidence            99999999   6654 8889999999999999986433      22334568999999999998 899999999999999


Q ss_pred             EEeCC
Q 025649          246 VYSIS  250 (250)
Q Consensus       246 vw~~~  250 (250)
                      +||++
T Consensus       322 iwd~~  326 (435)
T 4e54_B          322 VYSAS  326 (435)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            99974

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=212.65  Aligned_cols=229  Identities=10%  Similarity=0.043  Sum_probs=171.0

Q ss_pred             CcEEEEcccceeeeeec-cCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCC-------------
Q 025649            1 MWQIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE-------------   66 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~-------------   66 (250)
                      +|+|||+++++++..++ .+|...|++++|+|+++ +|++|+.||+|++||+++++.+..+..+...             
T Consensus        46 tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s  124 (318)
T 4ggc_A           46 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSS  124 (318)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEE
Confidence            58999999999888765 26788999999999999 8999999999999999998877666532110             


Q ss_pred             ---------------CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe---eccCCCCCC
Q 025649           67 ---------------NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS---RSKSTTKPL  128 (250)
Q Consensus        67 ---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~---~~~~~~~~~  128 (250)
                                     .........|...+..+.+.+      +++++++++.|+.|++||+++++...   .........
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  198 (318)
T 4ggc_A          125 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP------DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA  198 (318)
T ss_dssp             EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT------TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSC
T ss_pred             EecCCceEeeecCCCceeEEEEcCccCceEEEEEcC------CCCEEEEEecCcceeEEECCCCcccccceeeecccCCc
Confidence                           000011233566778888887      89999999999999999999865332   222333467


Q ss_pred             ccceeecccceeEEEeee------eeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEe--eCCCeEEEEecCCC
Q 025649          129 KGSQSTSKVNIRDAEMEI------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG--GNDKLVKVWDCSRF  200 (250)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~--~~d~~i~iwd~~~~  200 (250)
                      +..+.++|++..++....      ...++........ ...+...+..+.|+   +++..++++  +.|+.|++||++++
T Consensus       199 v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-~~~~~~~v~~~~~~---~~~~~~~~~sg~~d~~i~iwd~~~~  274 (318)
T 4ggc_A          199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-AVDAHSQVCSILWS---PHYKELISGHGFAQNQLVIWKYPTM  274 (318)
T ss_dssp             EEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE-EEECSSCEEEEEEE---TTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             eEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc-cccceeeeeeeeec---ccccceEEEEEcCCCEEEEEECCCC
Confidence            888889887765542211      1112222222222 23456778999999   777777654  47999999999998


Q ss_pred             cceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          201 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                               +++..+.+|.+.|++++|+| ++++|+||+.||+|+|||+.
T Consensus       275 ---------~~~~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          275 ---------AKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             ---------CEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred             ---------cEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence                     67778889999999999998 89999999999999999973

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-33  Score=220.44  Aligned_cols=218  Identities=15%  Similarity=0.167  Sum_probs=179.4

Q ss_pred             CcEEEEccc----ceeeeeeccCCCCCeeeEEEcCC-CCeEEEEecCCCeEEEEEccCCC------CccceecCCCCCCC
Q 025649            1 MWQIIDIRQ----HCLYKSLRAGHSSICSSVQFIPW-KPWEVISGGLDSKLVMWDFSKGR------PNKIVNFGLPENNG   69 (250)
Q Consensus         1 ti~iwd~~~----~~~~~~l~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~iwd~~~~~------~~~~~~~~~~~~~~   69 (250)
                      +|++||+.+    .+.+..+. +|...|.+++|+|+ +. +|++++.||.|++||+.+++      ....+.        
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--------  159 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDN-VLASGGNNGEIFIWDMNKCTESPSNYTPLTPG--------  159 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTT-BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC--------
T ss_pred             eEEEeecccccccccchhhcc-CCccceEEEEEcCCCCC-EEEEEcCCCeEEEEECCCCccccccccccccc--------
Confidence            589999987    45788888 99999999999998 66 89999999999999998876      222221        


Q ss_pred             CCCcccCCCceeEEecCCCcccCCC-CCEEEEEeCCCeEEEEeCCCceeEeeccCCC-----CCCccceeecccce-eEE
Q 025649           70 NAGQCYNPAFVHAIAIPDADMLDKT-NKICVVAKGDGVVDVINIESELNISRSKSTT-----KPLKGSQSTSKVNI-RDA  142 (250)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~  142 (250)
                        ....|...|.+++|+|      + +.+|++++.|+.|++||+++++....+....     ...+.+++|+|++. +++
T Consensus       160 --~~~~~~~~v~~~~~~~------~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  231 (416)
T 2pm9_A          160 --QSMSSVDEVISLAWNQ------SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA  231 (416)
T ss_dssp             --CSCCSSCCCCEEEECS------SCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred             --cccCCCCCeeEEEeCC------CCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence              1122677899999998      7 7899999999999999999988877766553     57899999999985 455


Q ss_pred             Eeeeeee---c----cCee-eeeecccc-CccccEEEEEeecCCC-CCcEEEEeeCCCeEEEEecCCCcceeccccccee
Q 025649          143 EMEILDQ---S----GGKR-LHLDYSVG-GHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL  212 (250)
Q Consensus       143 ~~~~~~~---~----~~~~-~~~~~~~~-~h~~~v~~~~~~p~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  212 (250)
                       .+..+.   .    +... ..++..+. +|...|.+++|+   | ++++|++++.|+.|++||++++         +.+
T Consensus       232 -~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~~l~s~~~dg~v~~wd~~~~---------~~~  298 (416)
T 2pm9_A          232 -TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWC---HQDEHLLLSSGRDNTVLLWNPESA---------EQL  298 (416)
T ss_dssp             -EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEEC---SSCSSCEEEEESSSEEEEECSSSC---------CEE
T ss_pred             -EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeC---CCCCCeEEEEeCCCCEEEeeCCCC---------ccc
Confidence             444443   2    2222 24556777 899999999999   6 8999999999999999999997         666


Q ss_pred             eeeeccCCceeEEEecCCCC-CeEEEeeCCceEEEEeCC
Q 025649          213 IKNINLNKKVNWLCTTPTES-ENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       213 ~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~i~vw~~~  250 (250)
                      ..+..|...|.+++|+| ++ .+|++++.|+.|++||++
T Consensus       299 ~~~~~~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          299 SQFPARGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             EEEECSSSCCCCEEECT-TCTTEEEECCSSSEEEEEESC
T ss_pred             eeecCCCCceEEEEECC-CCCCEEEEEecCCcEEEEEcc
Confidence            77889999999999998 55 899999999999999974

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.2e-33  Score=219.07  Aligned_cols=224  Identities=12%  Similarity=0.125  Sum_probs=167.3

Q ss_pred             CcEEEEcccceeeeeec-cCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +|+|||..++++...+. .+|...|++|+|+|+|+ +|++|+.||+|++||+++++.+..+. +            |...
T Consensus       126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~~~~~~~~~~~-~------------h~~~  191 (420)
T 4gga_A          126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNMT-S------------HSAR  191 (420)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEEC-C------------CSSC
T ss_pred             EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEcCCCcEEEEEe-C------------CCCc
Confidence            58999999999877665 26788999999999999 89999999999999999998888776 3            4677


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee------eeeeccCe
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSGGK  153 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  153 (250)
                      +.++.+        ++.+|++|+.|+.+++||.............+...+..+.++|++.++++.+      .++.....
T Consensus       192 v~~~s~--------~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~  263 (420)
T 4gga_A          192 VGSLSW--------NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  263 (420)
T ss_dssp             EEEEEE--------ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred             eEEEee--------CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence            777765        4689999999999999999876555444444457788889999998888421      23322211


Q ss_pred             -eeeeeccccCccccEEEEEeecCCCCCcEEEE--eeCCCeEEEEecCCCcceec-------------------------
Q 025649          154 -RLHLDYSVGGHTAAASCVAFSMFGERGKYLIS--GGNDKLVKVWDCSRFQGVQT-------------------------  205 (250)
Q Consensus       154 -~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~-------------------------  205 (250)
                       ....+.....|...|.+++|+|  .+..++++  |+.|++|++||++++.....                         
T Consensus       264 ~~~~~~~~~~~~~~~V~~~~~~p--~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~  341 (420)
T 4gga_A          264 GGWVPLQTFTQHQGAVKAVAWCP--WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF  341 (420)
T ss_dssp             SCSCCSEEECCCSSCEEEEEECT--TCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred             ccceeeeeecccCCceeeeeeCC--CcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEec
Confidence             1123345566777788888874  23344444  34677777777776543320                         


Q ss_pred             ---------ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          206 ---------SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       206 ---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                               ....+++..+.+|.+.|++++|+| ||++|+||+.|++|+|||+
T Consensus       342 ~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          342 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRC  393 (420)
T ss_dssp             TTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECC
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEEC
Confidence                     011355667789999999999998 8999999999999999997

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2e-33  Score=232.08  Aligned_cols=224  Identities=21%  Similarity=0.223  Sum_probs=172.4

Q ss_pred             CcEEEEcccc-----eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649            1 MWQIIDIRQH-----CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         1 ti~iwd~~~~-----~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      +|+|||+.+.     .....+. +|...|.+++|+|+++ +|++|+.||+|++||+.+++.+..+. +            
T Consensus       406 ~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~-~l~sgs~Dg~v~vwd~~~~~~~~~~~-~------------  470 (694)
T 3dm0_A          406 SIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQ-FALSGSWDGELRLWDLAAGVSTRRFV-G------------  470 (694)
T ss_dssp             EEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE-C------------
T ss_pred             cEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCC-EEEEEeCCCcEEEEECCCCcceeEEe-C------------
Confidence            5899998753     4556788 9999999999999999 89999999999999999988877776 3            


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec--cCCCCCCccceeecccc--eeEEEeeeeee--
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS--KSTTKPLKGSQSTSKVN--IRDAEMEILDQ--  149 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--  149 (250)
                      |...|.+++|+|      ++++|++++.|++|++||..........  ...+...+.+++|+|++  ..++ .+..|.  
T Consensus       471 h~~~v~~~~~s~------~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d~~v  543 (694)
T 3dm0_A          471 HTKDVLSVAFSL------DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV-SASWDKTV  543 (694)
T ss_dssp             CSSCEEEEEECT------TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE-EEETTSCE
T ss_pred             CCCCEEEEEEeC------CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE-EEeCCCeE
Confidence            578899999999      9999999999999999998765433322  23345679999999987  3455 333222  


Q ss_pred             --ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccc-------------------
Q 025649          150 --SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN-------------------  208 (250)
Q Consensus       150 --~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------------  208 (250)
                        ++....+....+.+|.+.|.+++|+   |++++|++|+.||.|++||++++........                   
T Consensus       544 ~vwd~~~~~~~~~~~~h~~~v~~v~~s---pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  620 (694)
T 3dm0_A          544 KVWNLSNCKLRSTLAGHTGYVSTVAVS---PDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAA  620 (694)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEE
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEe---CCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE
Confidence              2333445567788999999999999   8999999999999999999988765431110                   


Q ss_pred             ------------cceeeeeec-------------------cCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          209 ------------NDLLIKNIN-------------------LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       209 ------------~~~~~~~~~-------------------~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                                  ...+..+..                   +...+.+++|+| ++++|++|+.||.|++|++.
T Consensus       621 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          621 TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred             cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence                        011111110                   011267889998 89999999999999999974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.7e-34  Score=219.13  Aligned_cols=221  Identities=12%  Similarity=0.031  Sum_probs=177.7

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +|++||+.+++.+..+. +|...|.+++|+| ++. +|++|+.||.|++||+++++.+..+..          ...|...
T Consensus        96 ~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~~~~~~  163 (366)
T 3k26_A           96 IIRIINPITMQCIKHYV-GHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIFGG----------VEGHRDE  163 (366)
T ss_dssp             EEEEECTTTCCEEEEEE-SCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEECS----------TTSCSSC
T ss_pred             EEEEEEchhceEeeeec-CCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEecc----------cccccCc
Confidence            48999999999999999 9999999999999 777 899999999999999998887776631          0116789


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC---------------------------CCCCCccce
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS---------------------------TTKPLKGSQ  132 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---------------------------~~~~~~~~~  132 (250)
                      |.+++|+|      ++++|++++.||.|++||+++++....+..                           .+...+.++
T Consensus       164 v~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  237 (366)
T 3k26_A          164 VLSADYDL------LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCV  237 (366)
T ss_dssp             EEEEEECT------TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEE
T ss_pred             eeEEEECC------CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEE
Confidence            99999999      999999999999999999998654432221                           145778889


Q ss_pred             eecccceeEEE------eeeeeeccCe-----------eeeeeccccCccccEEEEEeecCCCC--CcEEEEeeCCCeEE
Q 025649          133 STSKVNIRDAE------MEILDQSGGK-----------RLHLDYSVGGHTAAASCVAFSMFGER--GKYLISGGNDKLVK  193 (250)
Q Consensus       133 ~~~~~~~~~~~------~~~~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~~p~~~~--~~~l~s~~~d~~i~  193 (250)
                      +|+  +.++++      +..|+.....           ....+..+.+|...|.+++|+   |+  +++|++|+.||.|+
T Consensus       238 ~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~~~l~~~~~dg~i~  312 (366)
T 3k26_A          238 RWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS---MDFWQKMLALGNQVGKLY  312 (366)
T ss_dssp             EEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE---ECTTSSEEEEECTTSCEE
T ss_pred             EEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc---CCCCCcEEEEEecCCcEE
Confidence            998  556663      2334443221           124466778899999999999   78  99999999999999


Q ss_pred             EEecCCCcceecccccceeeeeecc--CCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          194 VWDCSRFQGVQTSINNDLLIKNINL--NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       194 iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +||++++....     .....+..|  ...|.+++|+| ++++|++++.||.|++||+.
T Consensus       313 vwd~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          313 VWDLEVEDPHK-----AKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEECCSSSGGG-----CEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred             EEECCCCCCcc-----ccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEec
Confidence            99999875432     233456666  78999999998 89999999999999999974

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-33  Score=214.42  Aligned_cols=223  Identities=14%  Similarity=0.130  Sum_probs=181.0

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+.+++.+..+. +|...|.+++|+|+++ +|++++.||.|++||+.+++.+..+.              +...+
T Consensus        55 ~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~--------------~~~~v  118 (369)
T 3zwl_B           55 SASVWYSLNGERLGTLD-GHTGTIWSIDVDCFTK-YCVTGSADYSIKLWDVSNGQCVATWK--------------SPVPV  118 (369)
T ss_dssp             CEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEEEE--------------CSSCE
T ss_pred             EEEEEeCCCchhhhhhh-hcCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEee--------------cCCCe
Confidence            58999999999999999 9999999999999999 89999999999999999999888877              35789


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCC-----CeEEEEeCCCceeEee-----------ccC-CCCCCccceeecccceeEEE
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGD-----GVVDVINIESELNISR-----------SKS-TTKPLKGSQSTSKVNIRDAE  143 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~  143 (250)
                      .+++|+|      +++++++++.+     +.|++||+..+.....           ... .....+.+++|+|+++++++
T Consensus       119 ~~~~~~~------~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  192 (369)
T 3zwl_B          119 KRVEFSP------CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA  192 (369)
T ss_dssp             EEEEECT------TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEE
T ss_pred             EEEEEcc------CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEE
Confidence            9999999      99999999998     9999999986532111           111 11137899999999999984


Q ss_pred             eeeee----eccCee-eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecc------------
Q 025649          144 MEILD----QSGGKR-LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS------------  206 (250)
Q Consensus       144 ~~~~~----~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------------  206 (250)
                       +..+    .++... .+.+..+..|...|.+++|+   |++++|++++.|+.|++||++++......            
T Consensus       193 -~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  268 (369)
T 3zwl_B          193 -GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS---PDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVIT  268 (369)
T ss_dssp             -EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred             -EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC---CCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEec
Confidence             3222    222222 45566788899999999999   89999999999999999999886544211            


Q ss_pred             ----------------------------------cccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          207 ----------------------------------INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       207 ----------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                                                        ...+.+..+.+|...|.+++|+| ++++|++++.||.|++|+++
T Consensus       269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             SSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEEC
T ss_pred             CCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEECc
Confidence                                              01123345567999999999998 89999999999999999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.2e-33  Score=216.85  Aligned_cols=216  Identities=13%  Similarity=0.071  Sum_probs=179.6

Q ss_pred             CcEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|++||+.+++  .+..+. +|...|.+++|+|+++ +|++++.||.|++||+++++....+...           .+..
T Consensus        31 ~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~~   97 (372)
T 1k8k_C           31 EVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVIL-----------RINR   97 (372)
T ss_dssp             EEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTT-EEEEEETTSCEEEEEEETTEEEEEEECC-----------CCSS
T ss_pred             EEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCC-EEEEEcCCCeEEEEECCCCeeeeeEEee-----------cCCC
Confidence            48999999887  888999 9999999999999999 8999999999999999887754444321           1567


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee---EeeccCCCCCCccceeecccceeEEEe------eeeee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN---ISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQ  149 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  149 (250)
                      .|.+++|+|      ++++|++++.|+.|++||++.+..   .......+...+.+++|+|+++++++.      ..|+.
T Consensus        98 ~v~~~~~~~------~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~  171 (372)
T 1k8k_C           98 AARCVRWAP------NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA  171 (372)
T ss_dssp             CEEEEEECT------TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             ceeEEEECC------CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence            899999999      999999999999999999988653   334444556889999999999998852      23442


Q ss_pred             cc---------------CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 025649          150 SG---------------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK  214 (250)
Q Consensus       150 ~~---------------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  214 (250)
                      ..               ....+.+..+.+|...|.+++|+   |++++|++++.|+.|++||++++         +.+..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~i~d~~~~---------~~~~~  239 (372)
T 1k8k_C          172 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS---ANGSRVAWVSHDSTVCLADADKK---------MAVAT  239 (372)
T ss_dssp             CCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC---SSSSEEEEEETTTEEEEEEGGGT---------TEEEE
T ss_pred             ccccccccccccccccccchhhheEecCCCCCeEEEEEEC---CCCCEEEEEeCCCEEEEEECCCC---------ceeEE
Confidence            21               12345566778899999999999   89999999999999999999987         56677


Q ss_pred             eeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          215 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +..|...|.+++|+| ++.++++| .|+.|++|++
T Consensus       240 ~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~i~~~  272 (372)
T 1k8k_C          240 LASETLPLLAVTFIT-ESSLVAAG-HDCFPVLFTY  272 (372)
T ss_dssp             EECSSCCEEEEEEEE-TTEEEEEE-TTSSCEEEEE
T ss_pred             EccCCCCeEEEEEec-CCCEEEEE-eCCeEEEEEc
Confidence            788999999999998 78777777 8999999996

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-33  Score=214.51  Aligned_cols=220  Identities=19%  Similarity=0.229  Sum_probs=175.8

Q ss_pred             CcEEEEcc--cceeeeeeccCCCCCeeeEEEcCC--CCeEEEEecCCCeEEEEEccCCC--CccceecCCCCCCCCCCcc
Q 025649            1 MWQIIDIR--QHCLYKSLRAGHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKGR--PNKIVNFGLPENNGNAGQC   74 (250)
Q Consensus         1 ti~iwd~~--~~~~~~~l~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~   74 (250)
                      +|+|||+.  +++.+..+. +|...|.+++|+++  +. +|++|+.||.|++||+.+++  .+..+. .           
T Consensus        34 ~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~-----------   99 (379)
T 3jrp_A           34 TIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGT-ILASCSYDGKVLIWKEENGRWSQIAVHA-V-----------   99 (379)
T ss_dssp             CEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCS-EEEEEETTSCEEEEEEETTEEEEEEEEC-C-----------
T ss_pred             cEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCC-EEEEeccCCEEEEEEcCCCceeEeeeec-C-----------
Confidence            58999998  778888999 99999999999977  77 89999999999999999886  333333 2           


Q ss_pred             cCCCceeEEecCCCcccCCC--CCEEEEEeCCCeEEEEeCCCceeE-eeccCCCCCCccceeecc-------------cc
Q 025649           75 YNPAFVHAIAIPDADMLDKT--NKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSK-------------VN  138 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~  138 (250)
                       |...|.+++|+|      +  +++|++++.|+.|++||++.+... ......+...+.+++|+|             ++
T Consensus       100 -~~~~v~~~~~~~------~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  172 (379)
T 3jrp_A          100 -HSASVNSVQWAP------HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES  172 (379)
T ss_dssp             -CSSCEEEEEECC------GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTT
T ss_pred             -CCcceEEEEeCC------CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCC
Confidence             567899999999      7  899999999999999999986432 222233457899999999             68


Q ss_pred             eeEEE------eeeeeeccC-eeeeeeccccCccccEEEEEeecCCCC---CcEEEEeeCCCeEEEEecCCCcceecccc
Q 025649          139 IRDAE------MEILDQSGG-KRLHLDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQGVQTSIN  208 (250)
Q Consensus       139 ~~~~~------~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  208 (250)
                      .++++      +..|+.... ........+.+|...|.+++|+   |+   +++|++++.||.|++||++++.....   
T Consensus       173 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~s---p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---  246 (379)
T 3jrp_A          173 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS---PTVLLRSYLASVSQDRTCIIWTQDNEQGPWK---  246 (379)
T ss_dssp             CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC---CCCSSSEEEEEEETTSCEEEEEESSTTSCCE---
T ss_pred             CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEEC---CCCCCCCeEEEEeCCCEEEEEeCCCCCccce---
Confidence            88874      223444332 2334566788999999999999   78   89999999999999999998642210   


Q ss_pred             cceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          209 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                       ..+.....|...|.+++|+| ++++|++++.||.|++|++
T Consensus       247 -~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          247 -KTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             -EEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEEE
T ss_pred             -eeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEeC
Confidence             12223345888999999998 8999999999999999996

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.7e-34  Score=214.00  Aligned_cols=207  Identities=15%  Similarity=0.151  Sum_probs=156.3

Q ss_pred             eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC--ccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649           15 SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD   92 (250)
Q Consensus        15 ~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   92 (250)
                      .+. +|.+.|++++|+|+++ +|++|+.|++|++||+++++.  +..+. +            |...|.+++|+|    +
T Consensus         8 ~~~-~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~~~l~-g------------H~~~V~~v~~~~----~   68 (316)
T 3bg1_A            8 VDT-SHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILIADLR-G------------HEGPVWQVAWAH----P   68 (316)
T ss_dssp             -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEEEEEE-C------------CSSCEEEEEECC----G
T ss_pred             ecc-cccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEEEEEc-C------------CCccEEEEEeCC----C
Confidence            345 9999999999999999 899999999999999987643  34444 3            688999999986    1


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCce--eEeeccCCCCCCccceeeccc--ceeEEE------eeeeeeccCeeeeeecccc
Q 025649           93 KTNKICVVAKGDGVVDVINIESEL--NISRSKSTTKPLKGSQSTSKV--NIRDAE------MEILDQSGGKRLHLDYSVG  162 (250)
Q Consensus        93 ~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~  162 (250)
                      .++++|++|+.|++|++||++++.  ....+ ..+...+.+++|+|+  +.++++      +..|+............+.
T Consensus        69 ~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~  147 (316)
T 3bg1_A           69 MYGNILASCSYDRKVIIWREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN  147 (316)
T ss_dssp             GGSSCEEEEETTSCEEEECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT
T ss_pred             CCCCEEEEEECCCEEEEEECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec
Confidence            248999999999999999999864  22333 334578999999998  777773      2233333322233356678


Q ss_pred             CccccEEEEEeecCCCC-----------------CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649          163 GHTAAASCVAFSMFGER-----------------GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL  225 (250)
Q Consensus       163 ~h~~~v~~~~~~p~~~~-----------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (250)
                      +|...|.+++|+   |+                 +++|++|+.|+.|++||++.....      ..+..+.+|...|.++
T Consensus       148 ~h~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~------~~~~~l~~h~~~V~~v  218 (316)
T 3bg1_A          148 AHTIGCNAVSWA---PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW------KEEQKLEAHSDWVRDV  218 (316)
T ss_dssp             SSSSCBCCCEEC---CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE------EEEECCBCCSSCEEEE
T ss_pred             cccCCcceEEEc---cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc------ceeeecccCCCceEEE
Confidence            899999999999   44                 478999999999999999754211      2445677899999999


Q ss_pred             EecCCC---CCeEEEeeCCceEEEEeCC
Q 025649          226 CTTPTE---SENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       226 ~~~~~~---~~~l~s~~~d~~i~vw~~~  250 (250)
                      +|+|..   +++|++|+.|++|++|+++
T Consensus       219 ~~sp~~~~~~~~las~s~D~~v~iw~~~  246 (316)
T 3bg1_A          219 AWAPSIGLPTSTIASCSQDGRVFIWTCD  246 (316)
T ss_dssp             ECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred             EecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence            999832   3789999999999999863

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.6e-33  Score=215.06  Aligned_cols=221  Identities=11%  Similarity=0.084  Sum_probs=177.6

Q ss_pred             CcEEEEccccee-----eeeeccCC-----CCCeeeEEEc----CCCCeE-EEEecCCCeEEEEEccC------CCCcc-
Q 025649            1 MWQIIDIRQHCL-----YKSLRAGH-----SSICSSVQFI----PWKPWE-VISGGLDSKLVMWDFSK------GRPNK-   58 (250)
Q Consensus         1 ti~iwd~~~~~~-----~~~l~~~h-----~~~v~~l~~~----~~~~~~-l~s~s~dg~v~iwd~~~------~~~~~-   58 (250)
                      +|++||+.+++.     +..+. +|     ...|.+++|+    |+++ + |++++.||.|++||+++      ++.+. 
T Consensus        92 ~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  169 (397)
T 1sq9_A           92 DLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHPFADESNSLTLNW  169 (397)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCccccccccceeec
Confidence            589999998887     88888 88     5999999999    9999 8 99999999999999998      66665 


Q ss_pred             ----ceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC--C---CCCc
Q 025649           59 ----IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST--T---KPLK  129 (250)
Q Consensus        59 ----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~---~~~~  129 (250)
                          .+...      ......+...+.+++|+|      ++ ++++++.|+.|++||+++++....+...  +   ...+
T Consensus       170 ~~~~~~~~~------~~~~~~~~~~i~~~~~~~------~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i  236 (397)
T 1sq9_A          170 SPTLELQGT------VESPMTPSQFATSVDISE------RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  236 (397)
T ss_dssp             CCEEEEEEE------ECCSSSSCCCCCEEEECT------TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             cCcceeeee------eccccCCCCCceEEEECC------Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence                44310      000011567899999999      88 9999999999999999998877776651  2   5789


Q ss_pred             cceeecccceeEEEeeeee-------eccCeeeeeeccccC-------------ccccEEEEEeecCCCCCcEEEEeeCC
Q 025649          130 GSQSTSKVNIRDAEMEILD-------QSGGKRLHLDYSVGG-------------HTAAASCVAFSMFGERGKYLISGGND  189 (250)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-------------h~~~v~~~~~~p~~~~~~~l~s~~~d  189 (250)
                      .+++|+|+++++++ +..+       .++....+.+..+.+             |...|.+++|+   |++++|++++.|
T Consensus       237 ~~i~~~~~~~~l~~-~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d  312 (397)
T 1sq9_A          237 RSVKFSPQGSLLAI-AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN---DSGETLCSAGWD  312 (397)
T ss_dssp             EEEEECSSTTEEEE-EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC---SSSSEEEEEETT
T ss_pred             ceEEECCCCCEEEE-EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEEC---CCCCEEEEEeCC
Confidence            99999999999984 3333       334445556677777             99999999999   899999999999


Q ss_pred             CeEEEEecCCCcceecccccceeeeee------cc---------------CCceeEEEecCCCC----------CeEEEe
Q 025649          190 KLVKVWDCSRFQGVQTSINNDLLIKNI------NL---------------NKKVNWLCTTPTES----------ENLVVC  238 (250)
Q Consensus       190 ~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~~----------~~l~s~  238 (250)
                      |.|++||++++         +.+..+.      .|               ...|.+++|+| ++          ++|+++
T Consensus       313 g~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~l~s~  382 (397)
T 1sq9_A          313 GKLRFWDVKTK---------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK-KGWRSGMGADLNESLCCV  382 (397)
T ss_dssp             SEEEEEETTTT---------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC-TTTSBSTTCTTSCEEEEE
T ss_pred             CeEEEEEcCCC---------ceeEEEecccCcccchhhhhccccccccccCCceeEEEecc-ccccccccccccceEEEe
Confidence            99999999997         4445555      66               89999999998 66          799999


Q ss_pred             eCCceEEEEeCC
Q 025649          239 DTSKVVKVYSIS  250 (250)
Q Consensus       239 ~~d~~i~vw~~~  250 (250)
                      +.||.|++|+++
T Consensus       383 ~~dg~i~iw~~~  394 (397)
T 1sq9_A          383 CLDRSIRWFREA  394 (397)
T ss_dssp             ETTTEEEEEEEE
T ss_pred             cCCCcEEEEEcC
Confidence            999999999973

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-34  Score=227.27  Aligned_cols=224  Identities=6%  Similarity=-0.042  Sum_probs=166.8

Q ss_pred             CcEEEEcccceee----eeeccCCCCCeeeEEEcCC------CCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649            1 MWQIIDIRQHCLY----KSLRAGHSSICSSVQFIPW------KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN   70 (250)
Q Consensus         1 ti~iwd~~~~~~~----~~l~~~h~~~v~~l~~~~~------~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~   70 (250)
                      +|+|||+.+++..    ..+. +|.+.|.+++|+|+      +. +|++++.||+|++||+.+++.........  ....
T Consensus       184 tI~iWd~~~~~~~~~~~~~l~-~~~~~V~~v~wsp~~~~~~~~~-~LAs~s~DgtvrlWd~~~~~~~~~~~~~~--~~p~  259 (524)
T 2j04_B          184 CIQIFKMNTSTLHCVKVQTIV-HSFGEVWDLKWHEGCHAPHLVG-CLSFVSQEGTINFLEIIDNATDVHVFKMC--EKPS  259 (524)
T ss_dssp             EEEEEEEETTTCCEEEEEEEE-ECCCSEEEEEECSSCCCSSSSC-EEEEEETTSCEEEEECCCCSSSSSEEECC--CSCS
T ss_pred             eEEEEEccCCCCCceEEEEEE-ecCCcEEEEEECCCCCCCCCCc-eEEEEecCCeEEEEEcCCCccccccceee--cCce
Confidence            4899999887653    3466 78899999999997      45 89999999999999998765321000000  0000


Q ss_pred             CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccce--eecccc-eeEEEeeee
Q 025649           71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ--STSKVN-IRDAEMEIL  147 (250)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~  147 (250)
                      .....|...|.+++|+|      + ..|++|+.||+|++||++++.........+...|.++  .++|++ .++++ ++.
T Consensus       260 ~~l~~h~~~v~sv~~s~------~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS-~S~  331 (524)
T 2j04_B          260 LTLSLADSLITTFDFLS------P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST-VAV  331 (524)
T ss_dssp             EEECCTTTCEEEEEESS------S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE-EET
T ss_pred             EEEEcCCCCEEEEEecC------C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE-ecc
Confidence            11223678899999997      4 4899999999999999997644333223345788888  678888 77774 333


Q ss_pred             e----eccCeeeeeeccccCccc--cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCc
Q 025649          148 D----QSGGKRLHLDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK  221 (250)
Q Consensus       148 ~----~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  221 (250)
                      |    .++....++...+.+|..  .|.+++|+   |+++.+++++.|++|++||++++         ..+..+.+|.+.
T Consensus       332 D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fs---p~~~~l~s~~~d~tv~lwd~~~~---------~~~~~l~gH~~~  399 (524)
T 2j04_B          332 DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC---PQIYSYIYSDGASSLRAVPSRAA---------FAVHPLVSRETT  399 (524)
T ss_dssp             TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEE---TTTTEEEEECSSSEEEEEETTCT---------TCCEEEEECSSC
T ss_pred             CCeEEEEECCCCCcccccccccccCcccceEeC---CCcCeEEEeCCCCcEEEEECccc---------ccceeeecCCCc
Confidence            3    233333344445555543  47899999   88999999999999999999997         444567789999


Q ss_pred             eeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          222 VNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       222 v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      |++++|+| ++++|++|+.||+|++||+
T Consensus       400 V~sva~Sp-~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          400 ITAIGVSR-LHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             EEEEECCS-SCCBCEEEETTTEEECCBS
T ss_pred             eEEEEeCC-CCCeEEEEECCCEEEEEec
Confidence            99999998 8999999999999999986

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.9e-33  Score=210.17  Aligned_cols=224  Identities=18%  Similarity=0.181  Sum_probs=174.3

Q ss_pred             CcEEEEcccce-----eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649            1 MWQIIDIRQHC-----LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         1 ti~iwd~~~~~-----~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      +|+|||+.+++     ....++ +|...|.+++|+|+++ +|++++.|+.|++|+............             
T Consensus        62 ~i~vWd~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~dg~-~l~s~~~d~~i~~~~~~~~~~~~~~~~-------------  126 (340)
T 4aow_A           62 TIIMWKLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQ-FALSGSWDGTLRLWDLTTGTTTRRFVG-------------  126 (340)
T ss_dssp             CEEEEEECCSSSCSEEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEEC-------------
T ss_pred             eEEEEECCCCCcccceeeEEEe-CCCCCEEEEEECCCCC-EEEEEcccccceEEeecccceeeeecC-------------
Confidence            68999987543     567788 9999999999999999 899999999999999988766555542             


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccce--eEEEeeeee----e
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI--RDAEMEILD----Q  149 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~  149 (250)
                      +...+....+++      ++++|++++.|+.+++||+............+...+..++|++++.  +++ .+..+    .
T Consensus       127 ~~~~~~~~~~~~------~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-s~~~d~~i~i  199 (340)
T 4aow_A          127 HTKDVLSVAFSS------DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV-SCGWDKLVKV  199 (340)
T ss_dssp             CSSCEEEEEECT------TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE-EEETTSCEEE
T ss_pred             CCCceeEEEEee------cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE-EEcCCCEEEE
Confidence            356677888887      8999999999999999999887666555555667888899988754  333 33222    2


Q ss_pred             ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccc----------------------
Q 025649          150 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI----------------------  207 (250)
Q Consensus       150 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------------  207 (250)
                      ++....+.+..+.+|.+.|++++|+   |++++|++|+.||.|++||+++........                      
T Consensus       200 ~d~~~~~~~~~~~~h~~~v~~~~~s---~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d  276 (340)
T 4aow_A          200 WNLANCKLKTNHIGHTGYLNTVTVS---PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATG  276 (340)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEET
T ss_pred             EECCCCceeeEecCCCCcEEEEEEC---CCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCC
Confidence            2334445667788999999999999   899999999999999999998875442100                      


Q ss_pred             ---------ccce---------eeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          208 ---------NNDL---------LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       208 ---------~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                               ....         .....+|...|++++|+| ++++|++|+.||.|+|||++
T Consensus       277 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          277 PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEEE
T ss_pred             CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCC
Confidence                     0000         112236788899999998 89999999999999999973

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-34  Score=226.21  Aligned_cols=225  Identities=11%  Similarity=0.062  Sum_probs=164.1

Q ss_pred             CcEEEEccccee-----------eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc-cceecCCCCCC
Q 025649            1 MWQIIDIRQHCL-----------YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN-KIVNFGLPENN   68 (250)
Q Consensus         1 ti~iwd~~~~~~-----------~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~   68 (250)
                      +|+|||+.+++.           ...+. +|...|++++|++++  .|++|+.||+|++||+++++.. ..+. +     
T Consensus       236 tvrlWd~~~~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~-~-----  306 (524)
T 2j04_B          236 TINFLEIIDNATDVHVFKMCEKPSLTLS-LADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQ-V-----  306 (524)
T ss_dssp             CEEEEECCCCSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEE-C-----
T ss_pred             eEEEEEcCCCccccccceeecCceEEEE-cCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEee-c-----
Confidence            689999986642           23677 999999999999864  7999999999999999877433 3343 3     


Q ss_pred             CCCCcccCCCceeEE--ecCCCcccCCCC-CEEEEEeCCCeEEEEeCCCceeEeeccCCCC-CCccceeecccceeEEEe
Q 025649           69 GNAGQCYNPAFVHAI--AIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSKSTTK-PLKGSQSTSKVNIRDAEM  144 (250)
Q Consensus        69 ~~~~~~~~~~~v~~~--~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  144 (250)
                             |...|.++  .++|      ++ ++|++++.|++|++||+++++....+..+.. ..+.+++|+|+++.+++.
T Consensus       307 -------H~~~V~sv~~~~s~------~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~  373 (524)
T 2j04_B          307 -------HDSYILSVSTAYSD------FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYS  373 (524)
T ss_dssp             -------SSSCEEEEEEECCT------TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEE
T ss_pred             -------ccccEEEEEEEcCC------CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEe
Confidence                   67889999  5676      77 8999999999999999998765544433322 347899999999888742


Q ss_pred             e---eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee--------------c--
Q 025649          145 E---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ--------------T--  205 (250)
Q Consensus       145 ~---~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------------~--  205 (250)
                      +   ....++.....++..+.+|.+.|++++|+   |+|++|++|+.||+|++||+.......              .  
T Consensus       374 ~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S---p~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~  450 (524)
T 2j04_B          374 DGASSLRAVPSRAAFAVHPLVSRETTITAIGVS---RLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWD  450 (524)
T ss_dssp             CSSSEEEEEETTCTTCCEEEEECSSCEEEEECC---SSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECB
T ss_pred             CCCCcEEEEECcccccceeeecCCCceEEEEeC---CCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEec
Confidence            1   12222233344455677899999999999   899999999999999999975321000              0  


Q ss_pred             -cc------------------ccceeeeeeccCCceeEEEecCCC--CCeEEEeeCCceEEEEeCC
Q 025649          206 -SI------------------NNDLLIKNINLNKKVNWLCTTPTE--SENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       206 -~~------------------~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~vw~~~  250 (250)
                       ..                  ....+..+.+|...|++++|+|..  +..+++|+.||.|+||++.
T Consensus       451 ~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          451 YSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             CCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred             cCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence             00                  123344566899999999999832  4589999999999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.2e-32  Score=206.54  Aligned_cols=215  Identities=19%  Similarity=0.251  Sum_probs=169.0

Q ss_pred             ccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649            8 RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD   87 (250)
Q Consensus         8 ~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   87 (250)
                      ++.++..+|+ ||.+.|++|+|+|++..+|+|||.|++|++||+.+.+........        ....|...|.+++|+|
T Consensus        26 ~~~~l~~tL~-GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~--------~l~~h~~~V~~~~~s~   96 (340)
T 4aow_A           26 EQMTLRGTLK-GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR--------ALRGHSHFVSDVVISS   96 (340)
T ss_dssp             CEEEEEEEEC-CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE--------EECCCSSCEEEEEECT
T ss_pred             CceEEEEEEC-CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE--------EEeCCCCCEEEEEECC
Confidence            4556677899 999999999999985338999999999999999876543221100        1112678999999999


Q ss_pred             CcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccC-eeeeeecccc
Q 025649           88 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGG-KRLHLDYSVG  162 (250)
Q Consensus        88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~  162 (250)
                            ++++|++++.|+.|++|+............. ...+....+++++..+++ +..|.    ++. ..........
T Consensus        97 ------dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s-~s~d~~~~~~d~~~~~~~~~~~~  168 (340)
T 4aow_A           97 ------DGQFALSGSWDGTLRLWDLTTGTTTRRFVGH-TKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLGVCKYTVQDE  168 (340)
T ss_dssp             ------TSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTSSCEEE-EETTSCEEEECTTSCEEEEECSS
T ss_pred             ------CCCEEEEEcccccceEEeecccceeeeecCC-CCceeEEEEeecCcccee-ecCCCeEEEEEeCCCceEEEEec
Confidence                  9999999999999999999987766555444 366777889999998884 33222    221 2233345667


Q ss_pred             CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCc
Q 025649          163 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK  242 (250)
Q Consensus       163 ~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  242 (250)
                      +|...+.+++|++. +...++++++.|+.|++||++++         +....+.+|...|++++|+| ++++|++|+.||
T Consensus       169 ~~~~~v~~~~~~~~-~~~~~~~s~~~d~~i~i~d~~~~---------~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg  237 (340)
T 4aow_A          169 SHSEWVSCVRFSPN-SSNPIIVSCGWDKLVKVWNLANC---------KLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDG  237 (340)
T ss_dssp             SCSSCEEEEEECSC-SSSCEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTC
T ss_pred             cccCcccceEEccC-CCCcEEEEEcCCCEEEEEECCCC---------ceeeEecCCCCcEEEEEECC-CCCEEEEEeCCC
Confidence            89999999999832 23468899999999999999997         66677889999999999998 899999999999


Q ss_pred             eEEEEeCC
Q 025649          243 VVKVYSIS  250 (250)
Q Consensus       243 ~i~vw~~~  250 (250)
                      .|++||++
T Consensus       238 ~i~iwd~~  245 (340)
T 4aow_A          238 QAMLWDLN  245 (340)
T ss_dssp             EEEEEETT
T ss_pred             eEEEEEec
Confidence            99999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.9e-32  Score=205.61  Aligned_cols=210  Identities=14%  Similarity=0.157  Sum_probs=175.6

Q ss_pred             CcEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|++||+.+++  ....+. +|...|.+++|+|+++ +|++++.||.|++||+++++.+..+..             |..
T Consensus       120 ~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~-------------~~~  184 (337)
T 1gxr_A          120 TLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQG-------------HTD  184 (337)
T ss_dssp             EEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECC-------------CSS
T ss_pred             cEEEEECCCCCcceeeecc-cCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeec-------------ccC
Confidence            47899999877  667788 8999999999999999 899999999999999999887777752             467


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKR  154 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  154 (250)
                      .+.+++|+|      ++++|++++.|+.|++||+++++.......  ...+.+++|+|+++++++ +..+.    ++...
T Consensus       185 ~i~~~~~~~------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~-~~~~~~i~~~~~~~  255 (337)
T 1gxr_A          185 GASCIDISN------DGTKLWTGGLDNTVRSWDLREGRQLQQHDF--TSQIFSLGYCPTGEWLAV-GMESSNVEVLHVNK  255 (337)
T ss_dssp             CEEEEEECT------TSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECTTSSEEEE-EETTSCEEEEETTS
T ss_pred             ceEEEEECC------CCCEEEEEecCCcEEEEECCCCceEeeecC--CCceEEEEECCCCCEEEE-EcCCCcEEEEECCC
Confidence            899999999      999999999999999999999887766653  367899999999999984 32222    11111


Q ss_pred             eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649          155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  234 (250)
                      .+ ...+..|...|.+++|+   |++++|++++.||.|++||+.++         +.+ ....|...+.+++|+| ++++
T Consensus       256 ~~-~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~~~~~~~~---------~~~-~~~~~~~~v~~~~~s~-~~~~  320 (337)
T 1gxr_A          256 PD-KYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYG---------ASI-FQSKESSSVLSCDISV-DDKY  320 (337)
T ss_dssp             SC-EEEECCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTC---------CEE-EEEECSSCEEEEEECT-TSCE
T ss_pred             CC-eEEEcCCccceeEEEEC---CCCCEEEEecCCCcEEEEECCCC---------eEE-EEecCCCcEEEEEECC-CCCE
Confidence            11 23567899999999999   89999999999999999999987         332 3456888999999998 8899


Q ss_pred             EEEeeCCceEEEEeC
Q 025649          235 LVVCDTSKVVKVYSI  249 (250)
Q Consensus       235 l~s~~~d~~i~vw~~  249 (250)
                      |++++.||.|++|++
T Consensus       321 l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          321 IVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEETTSCEEEEEE
T ss_pred             EEEecCCCeEEEEEE
Confidence            999999999999996

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=210.10  Aligned_cols=226  Identities=13%  Similarity=0.156  Sum_probs=174.1

Q ss_pred             CcEEEEcccce-eeeeeccCCCCCeeeEE------EcCCCCeEEEEecCCCeEEEEEccCCC-CccceecCCCCCCCCCC
Q 025649            1 MWQIIDIRQHC-LYKSLRAGHSSICSSVQ------FIPWKPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAG   72 (250)
Q Consensus         1 ti~iwd~~~~~-~~~~l~~~h~~~v~~l~------~~~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~   72 (250)
                      +|++||+.+++ .+..+. +|...|.+++      |+|+++ +|++++.||.|++||+++++ .+..+.....       
T Consensus        91 ~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------  161 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSVK-GHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQG-------  161 (357)
T ss_dssp             CEEEECTTSCSSCSEEEC-CCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTT-------
T ss_pred             eEEEEeCCCCCccEEEEE-ecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCC-------
Confidence            58999999988 888999 9999999995      468888 89999999999999999886 5666642200       


Q ss_pred             cccCCCceeEEe----cCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc---cceeEEEee
Q 025649           73 QCYNPAFVHAIA----IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK---VNIRDAEME  145 (250)
Q Consensus        73 ~~~~~~~v~~~~----~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  145 (250)
                        .....+.+++    |+|      +++++++++.|+.|++||+++++......  +...+.+++|+|   ++.++++ +
T Consensus       162 --~~~~~v~~~~~~~~~~~------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~-~  230 (357)
T 3i2n_A          162 --ENKRDCWTVAFGNAYNQ------EERVVCAGYDNGDIKLFDLRNMALRWETN--IKNGVCSLEFDRKDISMNKLVA-T  230 (357)
T ss_dssp             --SCCCCEEEEEEECCCC-------CCCEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEESCSSSSCCEEEE-E
T ss_pred             --CCCCceEEEEEEeccCC------CCCEEEEEccCCeEEEEECccCceeeecC--CCCceEEEEcCCCCCCCCEEEE-E
Confidence              0134678887    677      99999999999999999999988755433  347899999999   8888884 3


Q ss_pred             eee----eccCeeeeeeccc-----cCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecc---------
Q 025649          146 ILD----QSGGKRLHLDYSV-----GGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTS---------  206 (250)
Q Consensus       146 ~~~----~~~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~---------  206 (250)
                      ..+    .++....+....+     .+|...|.+++|+   |+++ +|++++.||.|++||++........         
T Consensus       231 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~  307 (357)
T 3i2n_A          231 SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL---PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV  307 (357)
T ss_dssp             ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE---TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred             CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC---CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence            222    2222333333333     3899999999999   8888 8999999999999999875432110         


Q ss_pred             -cccceeeeeeccCCceeEEEecCCCCCeEE-EeeCCceEEEEeCC
Q 025649          207 -INNDLLIKNINLNKKVNWLCTTPTESENLV-VCDTSKVVKVYSIS  250 (250)
Q Consensus       207 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~vw~~~  250 (250)
                       .....+..+.+|...|.+++|+| ++++|+ +++.||.|++||+.
T Consensus       308 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          308 AGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             CCEEEEEEEEECCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEEC
T ss_pred             ccccceeeccccCCCCeeEEEEcC-CCCeEEEEecCCCcEEEEECC
Confidence             01135667788999999999998 788887 89999999999974

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.2e-32  Score=225.85  Aligned_cols=205  Identities=18%  Similarity=0.277  Sum_probs=168.3

Q ss_pred             eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc-----cceecCCCCCCCCCCcccCCCceeEEecC
Q 025649           12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN-----KIVNFGLPENNGNAGQCYNPAFVHAIAIP   86 (250)
Q Consensus        12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   86 (250)
                      ....++ +|.+.|++++|+|++..+|+||+.|++|++||+.+....     ..+. +            |...|.+++|+
T Consensus       374 ~~~~l~-~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~------------h~~~v~~v~~s  439 (694)
T 3dm0_A          374 LKGTMR-AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-G------------HSHFVEDVVLS  439 (694)
T ss_dssp             EEEEEE-CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-C------------CSSCEEEEEEC
T ss_pred             hhhhcc-cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-C------------CCCcEEEEEEC
Confidence            445688 999999999999987558999999999999999764322     2222 2            78899999999


Q ss_pred             CCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeeeccCeeeeeecc
Q 025649           87 DADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQSGGKRLHLDYS  160 (250)
Q Consensus        87 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  160 (250)
                      |      ++++|++|+.|+.|++||+.++.....+..+ ...+.+++|+|+++++++.      ..|+............
T Consensus       440 ~------~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~  512 (694)
T 3dm0_A          440 S------DGQFALSGSWDGELRLWDLAAGVSTRRFVGH-TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG  512 (694)
T ss_dssp             T------TSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred             C------CCCEEEEEeCCCcEEEEECCCCcceeEEeCC-CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC
Confidence            9      9999999999999999999998877766554 4789999999999999842      2333322222233334


Q ss_pred             ccCccccEEEEEeecCCCCC--cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649          161 VGGHTAAASCVAFSMFGERG--KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC  238 (250)
Q Consensus       161 ~~~h~~~v~~~~~~p~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  238 (250)
                      ..+|...|.+++|+   |++  .++++|+.|+.|++||+++.         .+...+.+|...|.+++|+| ++++|++|
T Consensus       513 ~~~h~~~v~~~~~~---~~~~~~~l~s~s~d~~v~vwd~~~~---------~~~~~~~~h~~~v~~v~~sp-dg~~l~sg  579 (694)
T 3dm0_A          513 GEGHRDWVSCVRFS---PNTLQPTIVSASWDKTVKVWNLSNC---------KLRSTLAGHTGYVSTVAVSP-DGSLCASG  579 (694)
T ss_dssp             TTSCSSCEEEEEEC---SCSSSCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECT-TSSEEEEE
T ss_pred             CCCCCCcEEEEEEe---CCCCcceEEEEeCCCeEEEEECCCC---------cEEEEEcCCCCCEEEEEEeC-CCCEEEEE
Confidence            46799999999999   665  68999999999999999987         56667889999999999998 89999999


Q ss_pred             eCCceEEEEeCC
Q 025649          239 DTSKVVKVYSIS  250 (250)
Q Consensus       239 ~~d~~i~vw~~~  250 (250)
                      +.||.|++||++
T Consensus       580 ~~Dg~i~iwd~~  591 (694)
T 3dm0_A          580 GKDGVVLLWDLA  591 (694)
T ss_dssp             ETTSBCEEEETT
T ss_pred             eCCCeEEEEECC
Confidence            999999999974

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.9e-33  Score=217.60  Aligned_cols=224  Identities=10%  Similarity=0.092  Sum_probs=162.9

Q ss_pred             CcEEEEcccceee--eeeccCCCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649            1 MWQIIDIRQHCLY--KSLRAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         1 ti~iwd~~~~~~~--~~l~~~h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      +|+|||+.+++..  ..+. +|.+.|++|+|+| ++. +|+||+.||+|++||++++.. ..+...          ..+.
T Consensus       143 ~i~lWd~~~~~~~~~~~~~-gH~~~V~~l~f~p~~~~-~l~s~s~D~~v~iwd~~~~~~-~~~~~~----------~~~~  209 (435)
T 4e54_B          143 DIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTN-QFYASSMEGTTRLQDFKGNIL-RVFASS----------DTIN  209 (435)
T ss_dssp             CEEEECSSCCSCCEEECCC-SSSCCCCEEEECSSCTT-EEEEECSSSCEEEEETTSCEE-EEEECC----------SSCS
T ss_pred             EEEEEECCCCCceeEEEcc-CCCCCEEEEEEeCCCCC-EEEEEeCCCEEEEeeccCCce-eEEecc----------CCCC
Confidence            5899999876543  4456 8999999999998 456 899999999999999976543 222211          0123


Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee-------c
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ-------S  150 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  150 (250)
                      ..+.+++|+|      ++++|++|+.||.|++||++.. .+..+.. +...+.+++|+|++..++..+..|.       .
T Consensus       210 ~~~~~~~~~~------~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~-h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~  281 (435)
T 4e54_B          210 IWFCSLDVSA------SSRMVVTGDNVGNVILLNMDGK-ELWNLRM-HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR  281 (435)
T ss_dssp             CCCCCEEEET------TTTEEEEECSSSBEEEEESSSC-BCCCSBC-CSSCEEEEEECTTCSSEEEEEETTSBCCEEETT
T ss_pred             ccEEEEEECC------CCCEEEEEeCCCcEeeeccCcc-eeEEEec-ccceEEeeeecCCCceEEEEecCcceeeEEecc
Confidence            4578899998      9999999999999999999754 3333333 3578999999999886554444333       2


Q ss_pred             cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec-------------------------
Q 025649          151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT-------------------------  205 (250)
Q Consensus       151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------------------------  205 (250)
                      .......+....+|...|++++|+   |+|++|++++.||.|++||++++.....                         
T Consensus       282 ~~~~~~~~~~~~~h~~~v~~~~~s---pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (435)
T 4e54_B          282 QVRGKASFLYSLPHRHPVNAACFS---PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNL  358 (435)
T ss_dssp             TCCSSSCCSBCCBCSSCEEECCBC---TTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSC
T ss_pred             cccccceEEEeeeccccccceeEC---CCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCE
Confidence            223223334456799999999999   8999999999999999999987543210                         


Q ss_pred             --------------------------ccccceeee-eeccCCceeEE-EecCCCCCeEEEeeCCceEEEEeCC
Q 025649          206 --------------------------SINNDLLIK-NINLNKKVNWL-CTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       206 --------------------------~~~~~~~~~-~~~~~~~v~~~-~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                                                ....+.+.. ..+|...|.++ +|+| +|++|++|+ |+.|+|||++
T Consensus       359 ~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          359 IVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             EEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC
T ss_pred             EEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECC
Confidence                                      001111222 23567778887 5787 899998876 8899999974

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.3e-32  Score=221.23  Aligned_cols=208  Identities=21%  Similarity=0.265  Sum_probs=172.9

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||... +.+..+. +|...|.+++|+|+++ +|++++.||.|++||. +++.+..+. +            |...|
T Consensus       326 ~i~~w~~~~-~~~~~~~-~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~-~~~~~~~~~-~------------~~~~v  388 (577)
T 2ymu_A          326 TVKLWNRNG-QHLQTLT-GHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLT-G------------HSSSV  388 (577)
T ss_dssp             CEEEEETTS-CEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEET-TCCEEEEEE-C------------CSSCE
T ss_pred             eEEEEeCCC-CeeEEEe-CCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcC-CCCEEEEec-C------------CCCCe
Confidence            589999864 4556788 9999999999999999 8999999999999996 466666665 2            56789


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLH  156 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  156 (250)
                      .+++|+|      ++++|++++.|+.|++||.. ++....+.. +...+.+++|+|+++++++ +..|.    ++. ..+
T Consensus       389 ~~~~~s~------dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~-~~~~v~~~~~s~d~~~l~~-~~~d~~v~~w~~-~~~  458 (577)
T 2ymu_A          389 RGVAFSP------DGQTIASASDDKTVKLWNRN-GQLLQTLTG-HSSSVWGVAFSPDDQTIAS-ASDDKTVKLWNR-NGQ  458 (577)
T ss_dssp             EEEEECT------TSSCEEEEETTSEEEEECTT-CCEEEEEEC-CSSCEEEEEECTTSSEEEE-EETTSEEEEEET-TSC
T ss_pred             EEEEECC------CCCEEEEEeCCCEEEEEeCC-CCEEEEecC-CCCCeEEEEECCCCCEEEE-EcCCCEEEEEEC-CCC
Confidence            9999999      99999999999999999965 444444443 3478999999999999984 32222    111 234


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      .+..+.+|...|.+++|+   |++++|++++.|+.|++||...          +++..+.+|...|++++|+| ++++|+
T Consensus       459 ~~~~~~~~~~~v~~~~~s---pd~~~las~~~d~~i~iw~~~~----------~~~~~~~~h~~~v~~l~~s~-dg~~l~  524 (577)
T 2ymu_A          459 LLQTLTGHSSSVRGVAFS---PDGQTIASASDDKTVKLWNRNG----------QLLQTLTGHSSSVRGVAFSP-DGQTIA  524 (577)
T ss_dssp             EEEEEECCSSCEEEEEEC---TTSCEEEEEETTSEEEEEETTS----------CEEEEEECCSSCEEEEEECT-TSSCEE
T ss_pred             EEEEEcCCCCCEEEEEEc---CCCCEEEEEeCCCEEEEEcCCC----------CEEEEEeCCCCCEEEEEEcC-CCCEEE
Confidence            556788999999999999   8999999999999999999643          56678889999999999998 899999


Q ss_pred             EeeCCceEEEEeC
Q 025649          237 VCDTSKVVKVYSI  249 (250)
Q Consensus       237 s~~~d~~i~vw~~  249 (250)
                      +++.||.|++||+
T Consensus       525 s~~~dg~v~lwd~  537 (577)
T 2ymu_A          525 SASDDKTVKLWNR  537 (577)
T ss_dssp             EEETTSEEEEECT
T ss_pred             EEECcCEEEEEeC
Confidence            9999999999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4e-33  Score=215.84  Aligned_cols=217  Identities=12%  Similarity=0.062  Sum_probs=173.6

Q ss_pred             CcEEEEcccce------eeeeeccCCCCCeeeEEEcCC----C---CeEEEEecCCCeEEEEEccCCCC-----ccceec
Q 025649            1 MWQIIDIRQHC------LYKSLRAGHSSICSSVQFIPW----K---PWEVISGGLDSKLVMWDFSKGRP-----NKIVNF   62 (250)
Q Consensus         1 ti~iwd~~~~~------~~~~l~~~h~~~v~~l~~~~~----~---~~~l~s~s~dg~v~iwd~~~~~~-----~~~~~~   62 (250)
                      +|++||+.+++      .+..+. +|...|.+++|+|+    +   . +|++++.||.|++||+.+++.     +..+..
T Consensus        37 ~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~  114 (397)
T 1sq9_A           37 YLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELC-LVATTSFSGDLLFYRITREDETKKVIFEKLDL  114 (397)
T ss_dssp             EEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEE-EEEEEETTSCEEEEEEEECTTTCCEEEEEECC
T ss_pred             EEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCcccc-EEEEEcCCCCEEEEEccCCcccccccceeecc
Confidence            48999999888      788888 99999999999999    8   8 899999999999999998876     555542


Q ss_pred             CCCCCCCCCCcccC--CCceeEEecC----CCcccCCCCCE-EEEEeCCCeEEEEeCCC------ceeEe-----ecc--
Q 025649           63 GLPENNGNAGQCYN--PAFVHAIAIP----DADMLDKTNKI-CVVAKGDGVVDVINIES------ELNIS-----RSK--  122 (250)
Q Consensus        63 ~~~~~~~~~~~~~~--~~~v~~~~~~----~~~~~~~~~~~-l~~~~~d~~i~~~d~~~------~~~~~-----~~~--  122 (250)
                      ..          .+  ...|.+++|+    |      ++++ |++++.||.|++||+++      ++...     .+.  
T Consensus       115 ~~----------~~~~~~~v~~~~~~~~~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  178 (397)
T 1sq9_A          115 LD----------SDMKKHSFWALKWGASNDR------LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT  178 (397)
T ss_dssp             SC----------TTGGGSCEEEEEEECCC----------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred             cc----------cccCCCcEEEEEEeeccCC------CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee
Confidence            20          00  3789999999    8      8999 99999999999999998      55443     332  


Q ss_pred             ----CCCCCCccceeecccceeEEEeee----eeeccCeeeeeeccccC---c---cccEEEEEeecCCCCCcEEEEeeC
Q 025649          123 ----STTKPLKGSQSTSKVNIRDAEMEI----LDQSGGKRLHLDYSVGG---H---TAAASCVAFSMFGERGKYLISGGN  188 (250)
Q Consensus       123 ----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---h---~~~v~~~~~~p~~~~~~~l~s~~~  188 (250)
                          ..+...+.+++|+|++ .+++ +.    ...++....+.+..+..   |   ...|.+++|+   |++++|++++.
T Consensus       179 ~~~~~~~~~~i~~~~~~~~~-~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~---~~~~~l~~~~~  253 (397)
T 1sq9_A          179 VESPMTPSQFATSVDISERG-LIAT-GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS---PQGSLLAIAHD  253 (397)
T ss_dssp             ECCSSSSCCCCCEEEECTTS-EEEE-ECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC---SSTTEEEEEEE
T ss_pred             eccccCCCCCceEEEECCCc-eEEE-EeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC---CCCCEEEEEec
Confidence                3345789999999999 7764 22    22223333445566777   8   9999999999   89999999999


Q ss_pred             C---CeEEEEecCCCcceecccccceeeeeec-------------cCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          189 D---KLVKVWDCSRFQGVQTSINNDLLIKNIN-------------LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       189 d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      |   +.|++||++++         +.+..+..             |...|.+++|+| ++++|++++.||.|++||++
T Consensus       254 d~~~g~i~i~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~  321 (397)
T 1sq9_A          254 SNSFGCITLYETEFG---------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVK  321 (397)
T ss_dssp             ETTEEEEEEEETTTC---------CEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETT
T ss_pred             CCCCceEEEEECCCC---------cccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcC
Confidence            9   99999999987         45555666             999999999998 88999999999999999974

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.5e-32  Score=211.13  Aligned_cols=218  Identities=14%  Similarity=0.205  Sum_probs=171.5

Q ss_pred             CcEEEEcccc-e---eeeeeccCCCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEccCCC-------CccceecCCCCCC
Q 025649            1 MWQIIDIRQH-C---LYKSLRAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGR-------PNKIVNFGLPENN   68 (250)
Q Consensus         1 ti~iwd~~~~-~---~~~~l~~~h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~-------~~~~~~~~~~~~~   68 (250)
                      +|+|||+.+. +   .+..+. +|.+.|.+++|+| ++. +|++|+.||+|++||+.++.       .+..+.       
T Consensus        58 ~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~-~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-------  128 (402)
T 2aq5_A           58 AFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPHNDN-VIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-------  128 (402)
T ss_dssp             CEEEEETTCCEECCTTCCCBC-CCSSCEEEEEECTTCTT-EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-------
T ss_pred             EEEEEECccCCCCCCCCceEe-cCCCCEEEEEeCCCCCC-EEEEEeCCCeEEEEEccCCCCccccCCceEEec-------
Confidence            4899998643 3   345677 9999999999999 777 99999999999999999873       344443       


Q ss_pred             CCCCcccCCCceeEEecCCCcccCCCC-CEEEEEeCCCeEEEEeCCCceeEeecc-CCCCCCccceeecccceeEEEee-
Q 025649           69 GNAGQCYNPAFVHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSK-STTKPLKGSQSTSKVNIRDAEME-  145 (250)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-  145 (250)
                            .|...|.+++|+|      ++ ++|++++.|+.|++||+++++....+. ..+...+.+++|+|++.++++.+ 
T Consensus       129 ------~h~~~v~~~~~~p------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  196 (402)
T 2aq5_A          129 ------GHTKRVGIVAWHP------TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR  196 (402)
T ss_dssp             ------CCSSCEEEEEECS------SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred             ------CCCCeEEEEEECc------CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence                  2678999999999      76 799999999999999999998887774 44567899999999999998522 


Q ss_pred             --eeeeccCeeeeeeccc-cCcccc-EEEEEeecCCCCCcEEEEe---eCCCeEEEEecCCCcceecccccceeeeeecc
Q 025649          146 --ILDQSGGKRLHLDYSV-GGHTAA-ASCVAFSMFGERGKYLISG---GNDKLVKVWDCSRFQGVQTSINNDLLIKNINL  218 (250)
Q Consensus       146 --~~~~~~~~~~~~~~~~-~~h~~~-v~~~~~~p~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  218 (250)
                        ....++....+.+..+ .+|.+. +.++.|+   |++++|++|   +.|+.|++||+++....       .......|
T Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-------~~~~~~~~  266 (402)
T 2aq5_A          197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV---SEGKILTTGFSRMSERQVALWDTKHLEEP-------LSLQELDT  266 (402)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC---STTEEEEEEECTTCCEEEEEEETTBCSSC-------SEEEECCC
T ss_pred             CCcEEEEeCCCCceeeeeccCCCCCcceEEEEc---CCCcEEEEeccCCCCceEEEEcCccccCC-------ceEEeccC
Confidence              1222333334455566 677765 8999999   899999999   78999999999986421       22233467


Q ss_pred             CCceeEEEecCCCCCeEE-EeeCCceEEEEeCC
Q 025649          219 NKKVNWLCTTPTESENLV-VCDTSKVVKVYSIS  250 (250)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~-s~~~d~~i~vw~~~  250 (250)
                      ...+..++|+| ++++|+ +|+.||.|++||++
T Consensus       267 ~~~v~~~~~s~-~~~~l~~~g~~dg~i~i~d~~  298 (402)
T 2aq5_A          267 SSGVLLPFFDP-DTNIVYLCGKGDSSIRYFEIT  298 (402)
T ss_dssp             CSSCEEEEEET-TTTEEEEEETTCSCEEEEEEC
T ss_pred             CCceeEEEEcC-CCCEEEEEEcCCCeEEEEEec
Confidence            78899999998 777776 56679999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.7e-32  Score=214.05  Aligned_cols=212  Identities=18%  Similarity=0.235  Sum_probs=172.7

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+.+++.+..+. +|.+.|.+++|+|++  +|++|+.||+|++||+++++.+..+. +            |...|
T Consensus       143 ~i~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~-~------------h~~~v  206 (464)
T 3v7d_B          143 MIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFE-G------------HNSTV  206 (464)
T ss_dssp             CEEEEETTTTEEEEEEC-CCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEEEEC-C------------CSSCE
T ss_pred             cEEEEECCCCcEEEEEe-CCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEEEEC-C------------CCCcc
Confidence            58999999999999999 999999999999987  79999999999999999998877776 3            57889


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEee----------------------ccCCCCCCccceeecccc
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR----------------------SKSTTKPLKGSQSTSKVN  138 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~  138 (250)
                      .++++++    .++++++++++.|+.|++||++++.....                      ....+...+.  .+++++
T Consensus       207 ~~l~~~~----~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~  280 (464)
T 3v7d_B          207 RCLDIVE----YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHG  280 (464)
T ss_dssp             EEEEEEE----SSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEE--EEEEET
T ss_pred             EEEEEec----CCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEE--EEcCCC
Confidence            9999984    12789999999999999999997653321                      1111122333  346778


Q ss_pred             eeEEEeeeee----eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 025649          139 IRDAEMEILD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK  214 (250)
Q Consensus       139 ~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  214 (250)
                      .++++ +..+    .++....+.+..+.+|...|.+++|+   |+++++++|+.||.|++||++++         +.+..
T Consensus       281 ~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~sg~~dg~i~vwd~~~~---------~~~~~  347 (464)
T 3v7d_B          281 NIVVS-GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD---HERKRCISASMDTTIRIWDLENG---------ELMYT  347 (464)
T ss_dssp             TEEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTTTEEEEEETTSCEEEEETTTT---------EEEEE
T ss_pred             CEEEE-EeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEc---CCCCEEEEEeCCCcEEEEECCCC---------cEEEE
Confidence            88874 3322    22334455667888999999999999   89999999999999999999997         66677


Q ss_pred             eeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          215 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +.+|...|.+++++   +.+|++++.||.|++||++
T Consensus       348 ~~~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~  380 (464)
T 3v7d_B          348 LQGHTALVGLLRLS---DKFLVSAAADGSIRGWDAN  380 (464)
T ss_dssp             ECCCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred             EeCCCCcEEEEEEc---CCEEEEEeCCCcEEEEECC
Confidence            88999999999986   4689999999999999974

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.7e-32  Score=209.66  Aligned_cols=214  Identities=16%  Similarity=0.208  Sum_probs=172.2

Q ss_pred             EEcccceeeeeeccCCCCCeeeEEEcCCC-CeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEE
Q 025649            5 IDIRQHCLYKSLRAGHSSICSSVQFIPWK-PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI   83 (250)
Q Consensus         5 wd~~~~~~~~~l~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   83 (250)
                      |++.+.+....+. +|...|.+++|+|++ + +|++|+.||.|++||+.+++....+...           .|...|.++
T Consensus        58 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------~h~~~v~~~  124 (383)
T 3ei3_B           58 RSLKSYKLHRTAS-PFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQGM-----------GPGDAITGM  124 (383)
T ss_dssp             HHHTTCEEEEEEC-CCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEECCC-----------STTCBEEEE
T ss_pred             ccccccceEEecc-CCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeeecC-----------CcCCceeEE
Confidence            3445677788888 999999999999999 6 9999999999999999988877666531           167899999


Q ss_pred             ecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC--CCCCccceeecccceeEEE------eeeeeeccCeee
Q 025649           84 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST--TKPLKGSQSTSKVNIRDAE------MEILDQSGGKRL  155 (250)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  155 (250)
                      +|+|     .++++|++++.|+.|++||+++.. ...+...  ....+.+++|+|+++++++      +..|+.    ..
T Consensus       125 ~~~~-----~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~----~~  194 (383)
T 3ei3_B          125 KFNQ-----FNTNQLFVSSIRGATTLRDFSGSV-IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL----DG  194 (383)
T ss_dssp             EEET-----TEEEEEEEEETTTEEEEEETTSCE-EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET----TS
T ss_pred             EeCC-----CCCCEEEEEeCCCEEEEEECCCCc-eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC----CC
Confidence            9997     356899999999999999999643 3333222  2367999999999999984      223333    23


Q ss_pred             eeeccccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  234 (250)
                      +.+..+.+|...|.+++|+   |+++ +|++++.|+.|++||+++.....     .++.. .+|...|.+++|+|.++++
T Consensus       195 ~~~~~~~~h~~~v~~~~~~---~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~-~~~~~~v~~~~~s~~~~~~  265 (383)
T 3ei3_B          195 HEIFKEKLHKAKVTHAEFN---PRCDWLMATSSVDATVKLWDLRNIKDKN-----SYIAE-MPHEKPVNAAYFNPTDSTK  265 (383)
T ss_dssp             CEEEEEECSSSCEEEEEEC---SSCTTEEEEEETTSEEEEEEGGGCCSTT-----CEEEE-EECSSCEEEEEECTTTSCE
T ss_pred             CEEEEeccCCCcEEEEEEC---CCCCCEEEEEeCCCEEEEEeCCCCCccc-----ceEEE-ecCCCceEEEEEcCCCCCE
Confidence            4566788899999999999   7888 99999999999999999843210     33333 3799999999999768889


Q ss_pred             EEEeeCCceEEEEeCC
Q 025649          235 LVVCDTSKVVKVYSIS  250 (250)
Q Consensus       235 l~s~~~d~~i~vw~~~  250 (250)
                      |++++.|+.|++||++
T Consensus       266 l~~~~~d~~i~iwd~~  281 (383)
T 3ei3_B          266 LLTTDQRNEIRVYSSY  281 (383)
T ss_dssp             EEEEESSSEEEEEETT
T ss_pred             EEEEcCCCcEEEEECC
Confidence            9999999999999974

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-32  Score=208.71  Aligned_cols=211  Identities=11%  Similarity=0.136  Sum_probs=165.4

Q ss_pred             ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc--CCCCccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649           10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS--KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD   87 (250)
Q Consensus        10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   87 (250)
                      |+++..+. +|.+.|++++|+|+++ +|++|+.||.|++||+.  +++.+..+. +            |...|.+++|+|
T Consensus         1 G~~~~~~~-~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~------------h~~~v~~~~~~~   65 (379)
T 3jrp_A            1 GSMVVIAN-AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDTLT-G------------HEGPVWRVDWAH   65 (379)
T ss_dssp             ----CCEE-ECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEEC-C------------CSSCEEEEEECC
T ss_pred             CCccEEec-CCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeeeEec-C------------CCCcEEEEEeCC
Confidence            45677888 9999999999999999 89999999999999998  444444554 2            578899999987


Q ss_pred             CcccCCCCCEEEEEeCCCeEEEEeCCCce--eEeeccCCCCCCccceeeccc--ceeEEE------eeeeeeccCeeeee
Q 025649           88 ADMLDKTNKICVVAKGDGVVDVINIESEL--NISRSKSTTKPLKGSQSTSKV--NIRDAE------MEILDQSGGKRLHL  157 (250)
Q Consensus        88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~  157 (250)
                          +.++++|++++.||.|++||+++++  ..... ..+...+.+++|+|+  +.++++      +..|+...... ..
T Consensus        66 ----~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~  139 (379)
T 3jrp_A           66 ----PKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-TS  139 (379)
T ss_dssp             ----GGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-CC
T ss_pred             ----CCCCCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-ee
Confidence                1128999999999999999999886  33333 334578999999999  888874      22333333211 22


Q ss_pred             eccccCccccEEEEEeecCCC-------------CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeE
Q 025649          158 DYSVGGHTAAASCVAFSMFGE-------------RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW  224 (250)
Q Consensus       158 ~~~~~~h~~~v~~~~~~p~~~-------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (250)
                      ...+.+|...|.+++|+   |             +++++++++.||.|++||+++.....     .+...+.+|...|.+
T Consensus       140 ~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~h~~~v~~  211 (379)
T 3jrp_A          140 PIIIDAHAIGVNSASWA---PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-----VLESTLEGHSDWVRD  211 (379)
T ss_dssp             EEEEECCTTCEEEEEEC---CCC----------CTTCEEEEEETTSCEEEEEEETTTTEE-----EEEEEECCCSSCEEE
T ss_pred             eEEecCCCCceEEEEEc---CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-----eeEEEEecccCcEeE
Confidence            33566899999999999   6             68999999999999999998764321     344567789999999


Q ss_pred             EEecCCC---CCeEEEeeCCceEEEEeCC
Q 025649          225 LCTTPTE---SENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       225 ~~~~~~~---~~~l~s~~~d~~i~vw~~~  250 (250)
                      ++|+| +   +.+|++++.||.|++||++
T Consensus       212 ~~~sp-~~~~~~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          212 VAWSP-TVLLRSYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             EEECC-CCSSSEEEEEEETTSCEEEEEES
T ss_pred             EEECC-CCCCCCeEEEEeCCCEEEEEeCC
Confidence            99998 6   8899999999999999964

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-32  Score=211.72  Aligned_cols=235  Identities=13%  Similarity=0.052  Sum_probs=182.3

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCC-------------
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN-------------   67 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~-------------   67 (250)
                      +|++|| .+++.+..+. +|...|.+++|+|+++ +|++++.||.|++||+.+++.+..+.......             
T Consensus       131 ~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (425)
T 1r5m_A          131 ELRLWN-KTGALLNVLN-FHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS  207 (425)
T ss_dssp             CEEEEE-TTSCEEEEEC-CCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC---------------CC
T ss_pred             eEEEEe-CCCCeeeecc-CCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcc
Confidence            489999 6788889999 9999999999999999 89999999999999999887666554332110             


Q ss_pred             ------------------------------CCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee
Q 025649           68 ------------------------------NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  117 (250)
Q Consensus        68 ------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~  117 (250)
                                                    ........|...|.+++|+|      ++++|++++.|+.|++||+++++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~~~~~d~~i~i~d~~~~~~  281 (425)
T 1r5m_A          208 LGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND------TNKLLLSASDDGTLRIWHGGNGNS  281 (425)
T ss_dssp             CBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET------TTTEEEEEETTSCEEEECSSSBSC
T ss_pred             eeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC------CCCEEEEEcCCCEEEEEECCCCcc
Confidence                                          00011224677899999998      999999999999999999998877


Q ss_pred             EeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEE
Q 025649          118 ISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV  194 (250)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~i  194 (250)
                      ...+..+ ...+.++.|+|++ .+++.+   ....++....+.+..+..|...|.+++|+   |++++|++++.||.|++
T Consensus       282 ~~~~~~~-~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~dg~i~i  356 (425)
T 1r5m_A          282 QNCFYGH-SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS---QDGQKYAVAFMDGQVNV  356 (425)
T ss_dssp             SEEECCC-SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC---TTSSEEEEEETTSCEEE
T ss_pred             ceEecCC-CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc---CCCCEEEEEECCCeEEE
Confidence            6666443 4789999999999 665321   12222333445566777899999999999   89999999999999999


Q ss_pred             EecCCCcceec-----------ccccceeeeeeccCC--ceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          195 WDCSRFQGVQT-----------SINNDLLIKNINLNK--KVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       195 wd~~~~~~~~~-----------~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ||++++.....           ....+++..+..|..  .|.+++|+| ++++|++++.||.|++|+++
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          357 YDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEECC
T ss_pred             EECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEeec
Confidence            99987631100           000125677788876  999999998 88899999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-31  Score=207.20  Aligned_cols=214  Identities=12%  Similarity=0.136  Sum_probs=173.4

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +|++||+.+++.+..+. +|...|.+++|+  +. +|++|+.||.|++||++.. ..+..+. +            |...
T Consensus       157 ~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-~------------~~~~  219 (401)
T 4aez_A          157 LVDIYDVESQTKLRTMA-GHQARVGCLSWN--RH-VLSSGSRSGAIHHHDVRIANHQIGTLQ-G------------HSSE  219 (401)
T ss_dssp             CEEEEETTTCCEEEEEC-CCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEE-C------------CSSC
T ss_pred             eEEEEECcCCeEEEEec-CCCCceEEEEEC--CC-EEEEEcCCCCEEEEecccCcceeeEEc-C------------CCCC
Confidence            48999999999999999 999999999995  45 8999999999999999854 4444444 3            5789


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee------eeeccCe
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI------LDQSGGK  153 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  153 (250)
                      |.+++|+|      ++++|++++.|+.|++||+++++.......+ ...+.+++|+|++..++..+.      ...++..
T Consensus       220 v~~~~~~~------~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~  292 (401)
T 4aez_A          220 VCGLAWRS------DGLQLASGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA  292 (401)
T ss_dssp             EEEEEECT------TSSEEEEEETTSCEEEEETTCSSEEEEECCC-SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred             eeEEEEcC------CCCEEEEEeCCCeEEEccCCCCCccEEecCC-cceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence            99999999      9999999999999999999998777665543 478999999998876664432      2222333


Q ss_pred             eeeeeccccCccccEEEEEeecCCCCCcEEEE--eeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649          154 RLHLDYSVGGHTAAASCVAFSMFGERGKYLIS--GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE  231 (250)
Q Consensus       154 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  231 (250)
                      ..+.+..+. +...|.+++|+   |+++++++  |+.||.|++||+.++..       .....+.+|...|.+++|+| +
T Consensus       293 ~~~~~~~~~-~~~~v~~~~~s---~~~~~l~~~~g~~dg~i~v~~~~~~~~-------~~~~~~~~h~~~v~~~~~s~-d  360 (401)
T 4aez_A          293 TGARVNTVD-AGSQVTSLIWS---PHSKEIMSTHGFPDNNLSIWSYSSSGL-------TKQVDIPAHDTRVLYSALSP-D  360 (401)
T ss_dssp             TCCEEEEEE-CSSCEEEEEEC---SSSSEEEEEECTTTCEEEEEEEETTEE-------EEEEEEECCSSCCCEEEECT-T
T ss_pred             CCCEEEEEe-CCCcEEEEEEC---CCCCeEEEEeecCCCcEEEEecCCccc-------eeEEEecCCCCCEEEEEECC-C
Confidence            344445554 56789999999   89999998  55899999999998632       22334678999999999998 8


Q ss_pred             CCeEEEeeCCceEEEEeCC
Q 025649          232 SENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       232 ~~~l~s~~~d~~i~vw~~~  250 (250)
                      +++|++++.||.|++|++.
T Consensus       361 g~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          361 GRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             SSEEEEECTTSEEEEEECC
T ss_pred             CCEEEEEeCCCcEEEEECC
Confidence            9999999999999999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.6e-31  Score=208.42  Aligned_cols=218  Identities=10%  Similarity=0.073  Sum_probs=170.4

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+.+++....+. .| ..+....|+|+++ +|++|+.||.|++||+.+++....+. +            |...|
T Consensus        79 ~v~i~d~~~~~~~~~~~-~~-~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~------------h~~~v  142 (420)
T 3vl1_A           79 HDFLFNTIIRDGSKMLK-RA-DYTAVDTAKLQMR-RFILGTTEGDIKVLDSNFNLQREIDQ-A------------HVSEI  142 (420)
T ss_dssp             EEEEEECCSEETTTTSC-SC-CEEEEEEECSSSC-EEEEEETTSCEEEECTTSCEEEEETT-S------------SSSCE
T ss_pred             cEEEEEecccceeeEEe-cC-CceEEEEEecCCC-EEEEEECCCCEEEEeCCCcceeeecc-c------------ccCcc
Confidence            47899999998888887 66 4555667899999 89999999999999999887766554 2            67899


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKR  154 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  154 (250)
                      .+++|+|      ++++|++++.|+.|++||+++++....+.. +...+.+++|+|+++++++      +..|+......
T Consensus       143 ~~~~~~~------~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~  215 (420)
T 3vl1_A          143 TKLKFFP------SGEALISSSQDMQLKIWSVKDGSNPRTLIG-HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT  215 (420)
T ss_dssp             EEEEECT------TSSEEEEEETTSEEEEEETTTCCCCEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEECC------CCCEEEEEeCCCeEEEEeCCCCcCceEEcC-CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence            9999999      999999999999999999999887766654 3578999999999999984      22344333333


Q ss_pred             eeeeccccCccccEEEEEeec------------------CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee
Q 025649          155 LHLDYSVGGHTAAASCVAFSM------------------FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI  216 (250)
Q Consensus       155 ~~~~~~~~~h~~~v~~~~~~p------------------~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  216 (250)
                      ...+.....|...+.+++|.|                  ++|++++|++|+.||.|++||++++.        .......
T Consensus       216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~  287 (420)
T 3vl1_A          216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE--------QTIQLPS  287 (420)
T ss_dssp             EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC--------EEEEECC
T ss_pred             eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc--------eeEEccc
Confidence            332222234555666665532                  23789999999999999999999873        2223335


Q ss_pred             ccCCceeEEEecCCCCC-eEEEeeCCceEEEEeCC
Q 025649          217 NLNKKVNWLCTTPTESE-NLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       217 ~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~vw~~~  250 (250)
                      .|...|.+++|+| ++. +|++|+.||.|++||++
T Consensus       288 ~~~~~v~~~~~~~-~~~~~l~~g~~dg~i~vwd~~  321 (420)
T 3vl1_A          288 KFTCSCNSLTVDG-NNANYIYAGYENGMLAQWDLR  321 (420)
T ss_dssp             TTSSCEEEEEECS-SCTTEEEEEETTSEEEEEETT
T ss_pred             ccCCCceeEEEeC-CCCCEEEEEeCCCeEEEEEcC
Confidence            6888999999998 666 99999999999999974

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-31  Score=203.19  Aligned_cols=203  Identities=16%  Similarity=0.171  Sum_probs=169.1

Q ss_pred             eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649           13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD   92 (250)
Q Consensus        13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   92 (250)
                      ...+. +|.+.|++++|+|+++ +|++|+.||.|++||+.+++.+..+. +            |...|.+++|+|     
T Consensus        25 ~~~l~-~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~-~------------h~~~v~~~~~~~-----   84 (369)
T 3zwl_B           25 AIKLT-GHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGTLD-G------------HTGTIWSIDVDC-----   84 (369)
T ss_dssp             EEEEE-CCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEEEC-C------------CSSCEEEEEECT-----
T ss_pred             cEEEE-EeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhhhh-h------------cCCcEEEEEEcC-----
Confidence            35577 9999999999999999 89999999999999999998887776 2            578899999999     


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee--------eeeeccCee----------
Q 025649           93 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME--------ILDQSGGKR----------  154 (250)
Q Consensus        93 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~----------  154 (250)
                       ++++|++++.||.|++||+++++......  ....+.+++|+|++++++...        ....++...          
T Consensus        85 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~  161 (369)
T 3zwl_B           85 -FTKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV  161 (369)
T ss_dssp             -TSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred             -CCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence             99999999999999999999988887776  347899999999999998422        111121111          


Q ss_pred             -eeeeccccCccc--cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649          155 -LHLDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE  231 (250)
Q Consensus       155 -~~~~~~~~~h~~--~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  231 (250)
                       ......+..|..  .+.+++|+   |++++|++++.||.|++||+++..        ..+..+..|...|.+++|+| +
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~v~~~~~~~-~  229 (369)
T 3zwl_B          162 SEEPIHKIITHEGLDAATVAGWS---TKGKYIIAGHKDGKISKYDVSNNY--------EYVDSIDLHEKSISDMQFSP-D  229 (369)
T ss_dssp             CSSCSEEEECCTTCCCEEEEEEC---GGGCEEEEEETTSEEEEEETTTTT--------EEEEEEECCSSCEEEEEECT-T
T ss_pred             ccceeeeccCCcCccceeEEEEc---CCCCEEEEEcCCCEEEEEECCCCc--------EeEEEEecCCCceeEEEECC-C
Confidence             112334445555  89999999   899999999999999999999831        56667788999999999998 8


Q ss_pred             CCeEEEeeCCceEEEEeCC
Q 025649          232 SENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       232 ~~~l~s~~~d~~i~vw~~~  250 (250)
                      +++|++++.|+.|++||++
T Consensus       230 ~~~l~~~~~d~~i~v~d~~  248 (369)
T 3zwl_B          230 LTYFITSSRDTNSFLVDVS  248 (369)
T ss_dssp             SSEEEEEETTSEEEEEETT
T ss_pred             CCEEEEecCCceEEEEECC
Confidence            9999999999999999974

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.1e-32  Score=227.22  Aligned_cols=215  Identities=14%  Similarity=0.209  Sum_probs=179.5

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|+|||+.+++.+..+. +|..+|.+++|+|+++ +|++|+.||.|++||+.+++.+..+. +            |...|
T Consensus        36 ~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~-~------------~~~~v  100 (814)
T 3mkq_A           36 RVEIWNYETQVEVRSIQ-VTETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEKVVDFE-A------------HPDYI  100 (814)
T ss_dssp             EEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCCEEEEEE-C------------CSSCE
T ss_pred             EEEEEECCCCceEEEEe-cCCCcEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEe-c------------CCCCE
Confidence            48999999999999999 9999999999999999 89999999999999999998887776 2            57889


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc-cceeEEEeeeee----eccCeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK-VNIRDAEMEILD----QSGGKRL  155 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~  155 (250)
                      .+++|+|      ++++|++++.||.|++||++++.........+...+.+++|+| ++..+++ +..+    .++....
T Consensus       101 ~~~~~s~------~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~v~vwd~~~~  173 (814)
T 3mkq_A          101 RSIAVHP------TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS-GCLDRTVKVWSLGQS  173 (814)
T ss_dssp             EEEEECS------SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE-EETTSEEEEEETTCS
T ss_pred             EEEEEeC------CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE-EeCCCeEEEEECCCC
Confidence            9999999      9999999999999999999987444443444457899999999 7888874 3222    2222222


Q ss_pred             eeeccccC-ccccEEEEEeecCCC--CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649          156 HLDYSVGG-HTAAASCVAFSMFGE--RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES  232 (250)
Q Consensus       156 ~~~~~~~~-h~~~v~~~~~~p~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (250)
                      .....+.. +...+.+++|+   |  +++++++++.||.|++||++++         ..+..+.+|...|.+++|+| ++
T Consensus       174 ~~~~~~~~~~~~~v~~~~~~---~~~~~~~l~~~~~dg~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~~~-~~  240 (814)
T 3mkq_A          174 TPNFTLTTGQERGVNYVDYY---PLPDKPYMITASDDLTIKIWDYQTK---------SCVATLEGHMSNVSFAVFHP-TL  240 (814)
T ss_dssp             SCSEEEECCCTTCCCEEEEC---CSTTCCEEEEECTTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECS-SS
T ss_pred             cceeEEecCCCCCEEEEEEE---ECCCCCEEEEEeCCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEcC-CC
Confidence            23334443 44789999999   6  8999999999999999999987         56667788999999999998 88


Q ss_pred             CeEEEeeCCceEEEEeCC
Q 025649          233 ENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       233 ~~l~s~~~d~~i~vw~~~  250 (250)
                      ++|++++.||.|++||+.
T Consensus       241 ~~l~~~~~dg~v~vwd~~  258 (814)
T 3mkq_A          241 PIIISGSEDGTLKIWNSS  258 (814)
T ss_dssp             SEEEEEETTSCEEEEETT
T ss_pred             CEEEEEeCCCeEEEEECC
Confidence            899999999999999973

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.1e-31  Score=210.05  Aligned_cols=233  Identities=15%  Similarity=0.108  Sum_probs=175.9

Q ss_pred             CcEEEEccc----------ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649            1 MWQIIDIRQ----------HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN   70 (250)
Q Consensus         1 ti~iwd~~~----------~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~   70 (250)
                      +|++||+.+          .+.+..+. +|...|.+++|+|+++.+|++|+.||.|++||+.++.........      .
T Consensus       152 ~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~  224 (430)
T 2xyi_A          152 DVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA------K  224 (430)
T ss_dssp             CEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEEC------S
T ss_pred             cEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceecc------c
Confidence            489999987          67788889 999999999999998768999999999999999875432111000      0


Q ss_pred             CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce---eEeeccCCCCCCccceeecccceeEEEeeee
Q 025649           71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL---NISRSKSTTKPLKGSQSTSKVNIRDAEMEIL  147 (250)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (250)
                      .....|...|.+++|+|     .++.+|++++.|+.|++||++++.   ...... .+...+.+++|+|++..++.++..
T Consensus       225 ~~~~~h~~~v~~v~~~p-----~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~  298 (430)
T 2xyi_A          225 NIFTGHTAVVEDVAWHL-----LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSA  298 (430)
T ss_dssp             EEECCCSSCEEEEEECS-----SCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCEEEEEECSSCTTEEEEEET
T ss_pred             eeecCCCCCEeeeEEeC-----CCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCCeEEEEeCCCCCCEEEEEeC
Confidence            01112678899999998     467899999999999999999863   333333 445789999999999854433332


Q ss_pred             ee----ccCee-eeeeccccCccccEEEEEeecCCCCC-cEEEEeeCCCeEEEEecCCCccee-----cccccceeeeee
Q 025649          148 DQ----SGGKR-LHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQGVQ-----TSINNDLLIKNI  216 (250)
Q Consensus       148 ~~----~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~  216 (250)
                      +.    ++... ..++..+.+|...|.+++|+   |++ .+|++++.|+.|++||+.......     ....+.++....
T Consensus       299 dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~s---p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  375 (430)
T 2xyi_A          299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWS---PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG  375 (430)
T ss_dssp             TSEEEEEETTCTTSCSEEEECCSSCEEEEEEC---SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC
T ss_pred             CCeEEEEeCCCCCCCeEEeecCCCCEEEEEEC---CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC
Confidence            22    22222 34566778899999999999   777 579999999999999998743221     111125666778


Q ss_pred             ccCCceeEEEecCCCCC-eEEEeeCCceEEEEeCC
Q 025649          217 NLNKKVNWLCTTPTESE-NLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       217 ~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~vw~~~  250 (250)
                      +|...|.+++|+| ++. +|++++.||.|++|+++
T Consensus       376 ~h~~~v~~~~~~p-~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          376 GHTAKISDFSWNP-NEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             CCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEEC
T ss_pred             CCCCCceEEEECC-CCCCEEEEEECCCCEEEeEcc
Confidence            8999999999998 666 89999999999999974

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.2e-33  Score=212.55  Aligned_cols=205  Identities=9%  Similarity=-0.029  Sum_probs=155.7

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC--CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK   96 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (250)
                      .+.++|++++|+|+++ +|++|+.|+.|++||+.++  +.+..+. +            |...|.+++|+|      +++
T Consensus         9 ~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~------------h~~~v~~~~~s~------~~~   68 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHARTFS-D------------HDKIVTCVDWAP------KSN   68 (377)
T ss_dssp             ECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCCBC-C------------CSSCEEEEEECT------TTC
T ss_pred             cCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEEEe-c------------CCceEEEEEEeC------CCC
Confidence            5678999999999999 8999999999999999987  5555554 2            578899999999      999


Q ss_pred             EEEEEeCCCeEEEEeCCCce---eEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeee---eeeccccC-cc
Q 025649           97 ICVVAKGDGVVDVINIESEL---NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRL---HLDYSVGG-HT  165 (250)
Q Consensus        97 ~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~-h~  165 (250)
                      +|++++.|+.|++||+.++.   ...... .+...+.+++|+|+++++++ +..+.    ++....   .....+.+ |.
T Consensus        69 ~l~s~s~d~~v~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~h~  146 (377)
T 3dwl_C           69 RIVTCSQDRNAYVYEKRPDGTWKQTLVLL-RLNRAATFVRWSPNEDKFAV-GSGARVISVCYFEQENDWWVSKHLKRPLR  146 (377)
T ss_dssp             CEEEEETTSSEEEC------CCCCEEECC-CCSSCEEEEECCTTSSCCEE-EESSSCEEECCC-----CCCCEEECSSCC
T ss_pred             EEEEEeCCCeEEEEEcCCCCceeeeeEec-ccCCceEEEEECCCCCEEEE-EecCCeEEEEEECCcccceeeeEeecccC
Confidence            99999999999999999876   333333 34578999999999999984 33222    222222   24566677 99


Q ss_pred             ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec---------ccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT---------SINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      ..|.+++|+   |++++|++++.|+.|++||++.......         .....++..+ +|...|.+++|+| ++++|+
T Consensus       147 ~~v~~~~~~---~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~  221 (377)
T 3dwl_C          147 STILSLDWH---PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALA  221 (377)
T ss_dssp             SCEEEEEEC---TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEE
T ss_pred             CCeEEEEEc---CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEE
Confidence            999999999   8999999999999999999974321110         0011344445 8999999999998 899999


Q ss_pred             EeeCCceEEEEeCC
Q 025649          237 VCDTSKVVKVYSIS  250 (250)
Q Consensus       237 s~~~d~~i~vw~~~  250 (250)
                      +++.||.|++||++
T Consensus       222 ~~~~d~~i~iwd~~  235 (377)
T 3dwl_C          222 YAGHDSSVTIAYPS  235 (377)
T ss_dssp             EEETTTEEC-CEEC
T ss_pred             EEeCCCcEEEEECC
Confidence            99999999999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.6e-31  Score=204.99  Aligned_cols=224  Identities=8%  Similarity=0.004  Sum_probs=172.0

Q ss_pred             CcEEEEcccceeeeee--ccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC---ccceecCCCCCCCCCCccc
Q 025649            1 MWQIIDIRQHCLYKSL--RAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP---NKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l--~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~   75 (250)
                      +|++||+++++....+  . .|...|.+++|+|+++ +|++++.||.|++||++.++.   ...+..+            
T Consensus        75 ~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~------------  140 (372)
T 1k8k_C           75 NAYVWTLKGRTWKPTLVIL-RINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKP------------  140 (372)
T ss_dssp             CEEEEEEETTEEEEEEECC-CCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTT------------
T ss_pred             eEEEEECCCCeeeeeEEee-cCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecc------------
Confidence            5899999988755443  5 7999999999999999 899999999999999988764   2233222            


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCC------------------CceeEeeccCCCCCCccceeeccc
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE------------------SELNISRSKSTTKPLKGSQSTSKV  137 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~~  137 (250)
                      |...|.+++|+|      ++++|++++.|+.|++||++                  .++....+. .+...+.+++|+|+
T Consensus       141 ~~~~i~~~~~~~------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~  213 (372)
T 1k8k_C          141 IRSTVLSLDWHP------NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSAN  213 (372)
T ss_dssp             CCSCEEEEEECT------TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSS
T ss_pred             cCCCeeEEEEcC------CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCC
Confidence            577899999999      99999999999999999964                  445555444 33578999999999


Q ss_pred             ceeEEEee---eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC--Ccce--ecc----
Q 025649          138 NIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR--FQGV--QTS----  206 (250)
Q Consensus       138 ~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~--~~~~--~~~----  206 (250)
                      +.++++.+   ....++....+.+..+..|...|.+++|+   |+++++++| .|+.|++||+..  +...  ...    
T Consensus       214 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~  289 (372)
T 1k8k_C          214 GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI---TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPK  289 (372)
T ss_dssp             SSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEE---ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-
T ss_pred             CCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEe---cCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccc
Confidence            99888422   12223333445666788899999999999   889988888 899999999988  4210  000    


Q ss_pred             -----------------cccce-------eeeeeccCCceeEEEecCCCC---CeEEEeeCCceEEEEeC
Q 025649          207 -----------------INNDL-------LIKNINLNKKVNWLCTTPTES---ENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       207 -----------------~~~~~-------~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~d~~i~vw~~  249 (250)
                                       .....       .....+|...|++++|++.++   .+|++|+.||.|++||+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          290 QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             -------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             cchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence                             00011       112248999999999887787   89999999999999996

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.1e-31  Score=199.52  Aligned_cols=214  Identities=14%  Similarity=0.151  Sum_probs=170.4

Q ss_pred             CcEEEEcccceeeeeecc----CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC--ccceecCCCCCCCCCCcc
Q 025649            1 MWQIIDIRQHCLYKSLRA----GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQC   74 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~----~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~   74 (250)
                      +|++||+.+++....+..    +|...|.+++|+|+++ +|++++.||.|++||+++++.  ...+. .           
T Consensus        73 ~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~-----------  139 (337)
T 1gxr_A           73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELT-S-----------  139 (337)
T ss_dssp             EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEE-C-----------
T ss_pred             eEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecc-c-----------
Confidence            479999987764333321    6889999999999999 899999999999999988763  33333 2           


Q ss_pred             cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeecc
Q 025649           75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSG  151 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  151 (250)
                       +...+.+++|+|      +++++++++.|+.|++||+++++....+..+ ...+.+++|+|+++++++.+   ....++
T Consensus       140 -~~~~i~~~~~~~------~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~~~d  211 (337)
T 1gxr_A          140 -SAPACYALAISP------DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH-TDGASCIDISNDGTKLWTGGLDNTVRSWD  211 (337)
T ss_dssp             -SSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             -CCCceEEEEECC------CCCEEEEEeCCCcEEEEeCCCCceeeeeecc-cCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence             467899999999      9999999999999999999998877766553 47899999999999988422   112222


Q ss_pred             CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649          152 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE  231 (250)
Q Consensus       152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  231 (250)
                      ....+.+..+ .+...+.+++|+   |+++++++++.|+.|++||+++.         +. .....|...|.+++|+| +
T Consensus       212 ~~~~~~~~~~-~~~~~v~~~~~s---~~~~~l~~~~~~~~i~~~~~~~~---------~~-~~~~~~~~~v~~~~~~~-~  276 (337)
T 1gxr_A          212 LREGRQLQQH-DFTSQIFSLGYC---PTGEWLAVGMESSNVEVLHVNKP---------DK-YQLHLHESCVLSLKFAY-C  276 (337)
T ss_dssp             TTTTEEEEEE-ECSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTSS---------CE-EEECCCSSCEEEEEECT-T
T ss_pred             CCCCceEeee-cCCCceEEEEEC---CCCCEEEEEcCCCcEEEEECCCC---------Ce-EEEcCCccceeEEEECC-C
Confidence            2222333333 367789999999   89999999999999999999986         22 35678999999999998 8


Q ss_pred             CCeEEEeeCCceEEEEeCC
Q 025649          232 SENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       232 ~~~l~s~~~d~~i~vw~~~  250 (250)
                      +++|++++.||.|++||++
T Consensus       277 ~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          277 GKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             SSEEEEEETTSEEEEEETT
T ss_pred             CCEEEEecCCCcEEEEECC
Confidence            8999999999999999974

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.9e-31  Score=205.13  Aligned_cols=227  Identities=13%  Similarity=0.116  Sum_probs=176.8

Q ss_pred             CcEEEEcccceeeeeec------------cCCCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCC
Q 025649            1 MWQIIDIRQHCLYKSLR------------AGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN   67 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~------------~~h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~   67 (250)
                      +|++||+.+++....+.            .+|...|.+++|+| ++. +|++++.||.|++||+.+++....+.      
T Consensus        67 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~------  139 (408)
T 4a11_B           67 VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG-MFTSSSFDKTLKVWDTNTLQTADVFN------  139 (408)
T ss_dssp             CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT-CEEEEETTSEEEEEETTTTEEEEEEE------
T ss_pred             eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc-EEEEEeCCCeEEEeeCCCCccceecc------
Confidence            58999999887665543            15999999999999 555 89999999999999999988877776      


Q ss_pred             CCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-
Q 025649           68 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-  146 (250)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  146 (250)
                              +...+.++.++|..   +++.++++++.|+.|++||+++++....+..+ ...+.+++|+|++..++.++. 
T Consensus       140 --------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~ll~~~~~  207 (408)
T 4a11_B          140 --------FEETVYSHHMSPVS---TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH-RQEILAVSWSPRYDYILATASA  207 (408)
T ss_dssp             --------CSSCEEEEEECSSC---SSCCEEEEEESSSSEEEEESSSSCCCEEECCC-CSCEEEEEECSSCTTEEEEEET
T ss_pred             --------CCCceeeeEeecCC---CCCcEEEEEcCCCeEEEEeCCCcceeeeecCC-CCcEEEEEECCCCCcEEEEEcC
Confidence                    35678888888721   25569999999999999999988777666543 478999999999986332333 


Q ss_pred             ------eeeccCe-e------------eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecc-
Q 025649          147 ------LDQSGGK-R------------LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS-  206 (250)
Q Consensus       147 ------~~~~~~~-~------------~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-  206 (250)
                            |+..... .            ......+.+|...|.+++|+   |++++|++++.||.|++||++++...... 
T Consensus       208 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  284 (408)
T 4a11_B          208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT---SDGLHLLTVGTDNRMRLWNSSNGENTLVNY  284 (408)
T ss_dssp             TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCCBCCCCC
T ss_pred             CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc---CCCCEEEEecCCCeEEEEECCCCccceecc
Confidence                  3332211 0            11122336788999999999   89999999999999999999886543210 


Q ss_pred             -------------------------------------cccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          207 -------------------------------------INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       207 -------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                                                           ...+.+..+.+|...|.+++|+| ++++|++++.||.|++||+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~  363 (408)
T 4a11_B          285 GKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVP  363 (408)
T ss_dssp             CCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEE
T ss_pred             ccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeC
Confidence                                                 12345566778999999999998 8899999999999999997


Q ss_pred             C
Q 025649          250 S  250 (250)
Q Consensus       250 ~  250 (250)
                      +
T Consensus       364 ~  364 (408)
T 4a11_B          364 S  364 (408)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.1e-32  Score=211.67  Aligned_cols=213  Identities=10%  Similarity=0.079  Sum_probs=147.1

Q ss_pred             CcEEEEccccee-----eeeeccCCCCCeeeEEEcC--------CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCC
Q 025649            1 MWQIIDIRQHCL-----YKSLRAGHSSICSSVQFIP--------WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN   67 (250)
Q Consensus         1 ti~iwd~~~~~~-----~~~l~~~h~~~v~~l~~~~--------~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~   67 (250)
                      ||+|||+++++.     +..+. +|.+.|++++|+|        +++ +|+||+.|++|+|||++++.++..+..     
T Consensus       112 ~v~lw~~~~~~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~~~~~~~~~~~-----  184 (393)
T 4gq1_A          112 TVRLIITKNETIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLTDEGPILAGYP-----  184 (393)
T ss_dssp             CEEEEEEETTEEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEETTEEEEEEEE-----
T ss_pred             cEEEEECCCCccceeeeecccC-CCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECCCCceeeeecC-----
Confidence            689999988754     34577 9999999999998        677 899999999999999988766555542     


Q ss_pred             CCCCCcccCCCceeEEecCCCcccCCCC-CEEEEEeCCCeEEEEeCCCceeEeecc------------------------
Q 025649           68 NGNAGQCYNPAFVHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSK------------------------  122 (250)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~------------------------  122 (250)
                              +...+.+++|+|      ++ ++|++++.|++|++||+++++......                        
T Consensus       185 --------~~~~v~~v~~~p------~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  250 (393)
T 4gq1_A          185 --------LSSPGISVQFRP------SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS  250 (393)
T ss_dssp             --------CSSCEEEEEEET------TEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred             --------CCCCcEEEEECC------CCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence                    467899999998      65 589999999999999999865433221                        


Q ss_pred             CCCCCCccceeec-ccceeEEE------eeeeeeccCeeeeeeccccCccccEEEE------------------EeecCC
Q 025649          123 STTKPLKGSQSTS-KVNIRDAE------MEILDQSGGKRLHLDYSVGGHTAAASCV------------------AFSMFG  177 (250)
Q Consensus       123 ~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~h~~~v~~~------------------~~~p~~  177 (250)
                      ..+...+.++.|+ |+++.+++      +..|+....   +....+..|...+..+                  .|+|. 
T Consensus       251 ~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  326 (393)
T 4gq1_A          251 SGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN---NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR-  326 (393)
T ss_dssp             -CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSS-
T ss_pred             ccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC---CCCceEeeecCccccEEEccccccccccCcceeEEEccC-
Confidence            1123456677775 78888874      223333222   2222333333333222                  23320 


Q ss_pred             CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          178 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       178 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .++.++++|+.||.|++||+.++         ........|..+|.+++|+| ||++||+++.+| +.+|.+
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~---------~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEK---------DSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCT---------TCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCC---------cEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence            24557788899999999999987         55556778999999999998 999999999776 555653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=8.7e-32  Score=208.79  Aligned_cols=235  Identities=18%  Similarity=0.168  Sum_probs=177.5

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +++|++++++....++ +|.+.|++++|+| +++ +|++|+.||.|++||+.+++....+...............|...|
T Consensus        25 ~~v~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  102 (408)
T 4a11_B           25 RRVLGLELNKDRDVER-IHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV  102 (408)
T ss_dssp             HHHHTEEECTTEEECC-CCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred             ceeeccccCcceeeee-ccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence            5678888888888899 9999999999999 888 899999999999999998877666542100000001112267899


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccc---eeEEEeeeeee----ccCe
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN---IRDAEMEILDQ----SGGK  153 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~  153 (250)
                      .+++|+|     .++++|++++.||.|++||+++++........  ..+.++.++|.+   .+++ .+..+.    ++..
T Consensus       103 ~~~~~~~-----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~d~~  174 (408)
T 4a11_B          103 ETVQWYP-----HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFE--ETVYSHHMSPVSTKHCLVA-VGTRGPKVQLCDLK  174 (408)
T ss_dssp             EEEEECT-----TCTTCEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEECSSCSSCCEEE-EEESSSSEEEEESS
T ss_pred             EEEEEcc-----CCCcEEEEEeCCCeEEEeeCCCCccceeccCC--CceeeeEeecCCCCCcEEE-EEcCCCeEEEEeCC
Confidence            9999998     46679999999999999999998877766543  677888888754   4666 333222    2233


Q ss_pred             eeeeeccccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCccee-cc------cccceeeeeeccCCceeEE
Q 025649          154 RLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQ-TS------INNDLLIKNINLNKKVNWL  225 (250)
Q Consensus       154 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~-~~------~~~~~~~~~~~~~~~v~~~  225 (250)
                      ..+.+..+.+|...|.+++|+   |+++ ++++|+.||.|++||++...... ..      ...........|...|.++
T Consensus       175 ~~~~~~~~~~~~~~v~~~~~~---~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          175 SGSCSHILQGHRQEILAVSWS---PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             SSCCCEEECCCCSCEEEEEEC---SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             CcceeeeecCCCCcEEEEEEC---CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence            445566788899999999999   7877 68999999999999998864211 00      0001112235788999999


Q ss_pred             EecCCCCCeEEEeeCCceEEEEeCC
Q 025649          226 CTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       226 ~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +|+| ++++|++++.||.|++||++
T Consensus       252 ~~~~-~~~~l~~~~~dg~i~vwd~~  275 (408)
T 4a11_B          252 CFTS-DGLHLLTVGTDNRMRLWNSS  275 (408)
T ss_dssp             EECT-TSSEEEEEETTSCEEEEETT
T ss_pred             EEcC-CCCEEEEecCCCeEEEEECC
Confidence            9998 89999999999999999974

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.4e-31  Score=197.80  Aligned_cols=217  Identities=7%  Similarity=-0.022  Sum_probs=145.9

Q ss_pred             CcEEEEcccc---eeeeeeccCCCCC-------------------------eeeEEEcCC----CCeEEEEecC------
Q 025649            1 MWQIIDIRQH---CLYKSLRAGHSSI-------------------------CSSVQFIPW----KPWEVISGGL------   42 (250)
Q Consensus         1 ti~iwd~~~~---~~~~~l~~~h~~~-------------------------v~~l~~~~~----~~~~l~s~s~------   42 (250)
                      +|++|+..++   +.+.++. +|+.+                         |..|+|+|+    ++ .+++++.      
T Consensus        64 ~v~lw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~-~l~s~g~~~~v~~  141 (356)
T 2w18_A           64 VVSLWKALDAWQWEKLYTWH-FAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQ-VLLKSGNIKAVLG  141 (356)
T ss_dssp             EEEEEEESSSSBEEEEEEEE-CCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCE-EEEEEEEEEEEEE
T ss_pred             eEEEcccCCCccceeeEEEe-ccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCcccccc-EEEeCCCeEEEEe
Confidence            4899999988   8888888 77754                         456666667    55 5666553      


Q ss_pred             --------------CCeEEEEEc-cCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeE
Q 025649           43 --------------DSKLVMWDF-SKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV  107 (250)
Q Consensus        43 --------------dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i  107 (250)
                                    |+.|++|++ .+++.+..+..             |+..+..++|+|..   .++.+|++++.|++|
T Consensus       142 l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~-------------~~~~v~~l~fs~~~---g~~~~LaSgS~D~TI  205 (356)
T 2w18_A          142 LTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFL-------------MPPEETILTFAEVQ---GMQEALLGTTIMNNI  205 (356)
T ss_dssp             ETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEE-------------CCCSSCEEEEEEEE---TSTTEEEEEETTSEE
T ss_pred             cCCCcEEEecccCCCCcEEEEEECCCCceeeeecc-------------CCCceeeEEeeccC---CCCceEEEecCCCcE
Confidence                          555666665 23444443331             35556666666521   267899999999999


Q ss_pred             EEEeCCCceeEeeccCCC--CCCccceeecccceeEEEe-----------eeeee----ccCeeeeeeccc-----cCcc
Q 025649          108 DVINIESELNISRSKSTT--KPLKGSQSTSKVNIRDAEM-----------EILDQ----SGGKRLHLDYSV-----GGHT  165 (250)
Q Consensus       108 ~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~~-----~~h~  165 (250)
                      ++||+++++.+..+..++  ...+.+++|+|+|+++++.           +..|.    ++....+.+..+     .+|.
T Consensus       206 kIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~  285 (356)
T 2w18_A          206 VIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA  285 (356)
T ss_dssp             EEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC
T ss_pred             EEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc
Confidence            999999999888876543  2356677899999988631           11111    111112222221     3565


Q ss_pred             ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee-EEEecCCCCCeEEEeeCCceE
Q 025649          166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN-WLCTTPTESENLVVCDTSKVV  244 (250)
Q Consensus       166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i  244 (250)
                      ..+.+..+     ++.++++|+.|++|+|||++++         +++..+.+|...+. .++|+| ||++|++|+.|++|
T Consensus       286 ~~~lsg~~-----sg~~lASgS~DgTIkIWDl~tG---------k~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~D~TI  350 (356)
T 2w18_A          286 GRFLEGDV-----KDHCAAAILTSGTIAIWDLLLG---------QCTALLPPVSDQHWSFVKWSG-TDSHLLAGQKDGNI  350 (356)
T ss_dssp             CCEEEEEE-----ETTEEEEEETTSCEEEEETTTC---------SEEEEECCC--CCCCEEEECS-SSSEEEEECTTSCE
T ss_pred             ceeEcccc-----CCCEEEEEcCCCcEEEEECCCC---------cEEEEecCCCCCeEEEEEECC-CCCEEEEEECCCcE
Confidence            55443333     3678999999999999999998         66777788887765 589998 99999999999999


Q ss_pred             EEEeCC
Q 025649          245 KVYSIS  250 (250)
Q Consensus       245 ~vw~~~  250 (250)
                      +|||+.
T Consensus       351 klWd~~  356 (356)
T 2w18_A          351 FVYHYS  356 (356)
T ss_dssp             EEEEEC
T ss_pred             EEecCC
Confidence            999974

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-31  Score=205.07  Aligned_cols=214  Identities=12%  Similarity=0.133  Sum_probs=168.7

Q ss_pred             CcEEEEc----ccce------eeeeeccC----------CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccce
Q 025649            1 MWQIIDI----RQHC------LYKSLRAG----------HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIV   60 (250)
Q Consensus         1 ti~iwd~----~~~~------~~~~l~~~----------h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~   60 (250)
                      +|++||+    .+++      ....+. .          |.+.|.+++|+|+++ +|++++.||.|++|| .+++.+..+
T Consensus        69 ~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~~-~~~~~~~~~  145 (425)
T 1r5m_A           69 VARLARIVETDQEGKKYWKLTIIAELR-HPFALSASSGKTTNQVTCLAWSHDGN-SIVTGVENGELRLWN-KTGALLNVL  145 (425)
T ss_dssp             EEEEEEEEEC------CEEEEEEEEEE-CCCCCC------CBCEEEEEECTTSS-EEEEEETTSCEEEEE-TTSCEEEEE
T ss_pred             eEEEEEEecccCCcccccccccccccc-ccccccccccCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEe-CCCCeeeec
Confidence            4899999    8887      455555 3          688999999999999 899999999999999 556666666


Q ss_pred             ecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCC-------------
Q 025649           61 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP-------------  127 (250)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-------------  127 (250)
                      . .            |...|.+++|+|      ++++|++++.|+.|++||+++++....+......             
T Consensus       146 ~-~------------~~~~v~~~~~~~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (425)
T 1r5m_A          146 N-F------------HRAPIVSVKWNK------DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDG  206 (425)
T ss_dssp             C-C------------CCSCEEEEEECT------TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------C
T ss_pred             c-C------------CCccEEEEEECC------CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCc
Confidence            5 2            578899999999      9999999999999999999998877666554321             


Q ss_pred             -CccceeecccceeEEEe--eeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee
Q 025649          128 -LKGSQSTSKVNIRDAEM--EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ  204 (250)
Q Consensus       128 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  204 (250)
                       .+.++.|+|++.+++..  +....++....+.+..+.+|...|.+++|+   |++++|++++.|+.|++||++++    
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~d~~i~i~d~~~~----  279 (425)
T 1r5m_A          207 SLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN---DTNKLLLSASDDGTLRIWHGGNG----  279 (425)
T ss_dssp             CCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE---TTTTEEEEEETTSCEEEECSSSB----
T ss_pred             ceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC---CCCCEEEEEcCCCEEEEEECCCC----
Confidence             18899999998755521  111122223334556677899999999999   89999999999999999999987    


Q ss_pred             cccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          205 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       205 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                           +....+..|...|.+++|+| ++ ++++++.|+.|++||++
T Consensus       280 -----~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~  318 (425)
T 1r5m_A          280 -----NSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLK  318 (425)
T ss_dssp             -----SCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETT
T ss_pred             -----ccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECC
Confidence                 55566778999999999998 67 89999999999999974

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=222.82  Aligned_cols=221  Identities=19%  Similarity=0.230  Sum_probs=177.0

Q ss_pred             CcEEEEcc--cceeeeeeccCCCCCeeeEEEcCC--CCeEEEEecCCCeEEEEEccCCC--CccceecCCCCCCCCCCcc
Q 025649            1 MWQIIDIR--QHCLYKSLRAGHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKGR--PNKIVNFGLPENNGNAGQC   74 (250)
Q Consensus         1 ti~iwd~~--~~~~~~~l~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~   74 (250)
                      +|+|||+.  +++.+..+. +|.++|.+++|+|+  +. +|++|+.||+|++||+.+++  .+..+. +           
T Consensus        32 ~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~-~l~s~s~Dg~I~vwd~~~~~~~~~~~~~-~-----------   97 (753)
T 3jro_A           32 TIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGT-ILASCSYDGKVLIWKEENGRWSQIAVHA-V-----------   97 (753)
T ss_dssp             EEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCS-EEEEEETTSCEEEEEEETTEEEEEEEEC-C-----------
T ss_pred             cEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCC-EEEEEeCCCeEEEEECCCCccccccccc-C-----------
Confidence            48999998  678888999 99999999999988  77 89999999999999999876  333333 2           


Q ss_pred             cCCCceeEEecCCCcccCCC--CCEEEEEeCCCeEEEEeCCCceeE-eeccCCCCCCccceeecc-------------cc
Q 025649           75 YNPAFVHAIAIPDADMLDKT--NKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSK-------------VN  138 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~  138 (250)
                       |...|.+++|+|      +  ++++++|+.||.|++||++++... ......+...+.++.|+|             ++
T Consensus        98 -h~~~V~~v~~sp------~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~  170 (753)
T 3jro_A           98 -HSASVNSVQWAP------HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES  170 (753)
T ss_dssp             -CSSCEEEEEECC------GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGG
T ss_pred             -CCCCeEEEEECC------CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCC
Confidence             578899999999      7  999999999999999999986332 222233457899999999             57


Q ss_pred             eeEEE------eeeeeeccC-eeeeeeccccCccccEEEEEeecCCCC---CcEEEEeeCCCeEEEEecCCCcceecccc
Q 025649          139 IRDAE------MEILDQSGG-KRLHLDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQGVQTSIN  208 (250)
Q Consensus       139 ~~~~~------~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  208 (250)
                      ..+++      +..|+.... ........+.+|...|.+++|+   |+   ++++++|+.||.|++||++++.....   
T Consensus       171 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s---p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~---  244 (753)
T 3jro_A          171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS---PTVLLRSYLASVSQDRTCIIWTQDNEQGPWK---  244 (753)
T ss_dssp             CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC---CCCSSSEEEEEEESSSCEEEEEESSSSSCCB---
T ss_pred             CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec---cCCCCCCEEEEEecCCEEEEecCCCCCCcce---
Confidence            88874      223444332 2335667788999999999999   77   89999999999999999998632210   


Q ss_pred             cceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          209 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                       ........|...|++++|+| ++++|++|+.||.|++|+++
T Consensus       245 -~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          245 -KTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             -CCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCBCC
T ss_pred             -eEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEecC
Confidence             12334456888999999998 89999999999999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=208.83  Aligned_cols=216  Identities=8%  Similarity=0.003  Sum_probs=167.9

Q ss_pred             CcEEEEcccce---eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC----CCCccceecCCCCCCCCCCc
Q 025649            1 MWQIIDIRQHC---LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK----GRPNKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         1 ti~iwd~~~~~---~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~----~~~~~~~~~~~~~~~~~~~~   73 (250)
                      +|+|||+.+++   .+..+  .|...|.+++|+|+++ +|++|+.||.|++||+.+    .+.+..+. +          
T Consensus        46 ~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~----------  111 (416)
T 2pm9_A           46 SLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANNAINSMARFS-N----------  111 (416)
T ss_dssp             CCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSS-CEEEEESSSCEEEECCSSTTSCCCEEEECC-C----------
T ss_pred             eEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCC-eEEEEccCCeEEEeecccccccccchhhcc-C----------
Confidence            48999999876   33344  5899999999999999 899999999999999987    23344443 2          


Q ss_pred             ccCCCceeEEecCCCcccCCC-CCEEEEEeCCCeEEEEeCCCce------eEeec--cCCCCCCccceeeccc-ceeEEE
Q 025649           74 CYNPAFVHAIAIPDADMLDKT-NKICVVAKGDGVVDVINIESEL------NISRS--KSTTKPLKGSQSTSKV-NIRDAE  143 (250)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~------~~~~~--~~~~~~~~~~~~~~~~-~~~~~~  143 (250)
                        |...|.+++|+|      + +++|++++.|+.|++||+++++      .....  ...+...+.+++|+|+ +.++++
T Consensus       112 --h~~~v~~~~~~~------~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  183 (416)
T 2pm9_A          112 --HSSSVKTVKFNA------KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS  183 (416)
T ss_dssp             --SSSCCCEEEECS------SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred             --CccceEEEEEcC------CCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEE
Confidence              678899999998      7 8999999999999999999876      33222  2334578999999999 566663


Q ss_pred             eeeee----eccCeeeeeeccccCc------cccEEEEEeecCCCCC-cEEEEeeCCC---eEEEEecCCCcceeccccc
Q 025649          144 MEILD----QSGGKRLHLDYSVGGH------TAAASCVAFSMFGERG-KYLISGGNDK---LVKVWDCSRFQGVQTSINN  209 (250)
Q Consensus       144 ~~~~~----~~~~~~~~~~~~~~~h------~~~v~~~~~~p~~~~~-~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~  209 (250)
                       +..+    .++....+.+..+..|      ...|.+++|+   |++ .++++++.|+   .|++||++++.        
T Consensus       184 -~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~d~~~~~i~~~d~~~~~--------  251 (416)
T 2pm9_A          184 -AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH---PKNSTRVATATGSDNDPSILIWDLRNAN--------  251 (416)
T ss_dssp             -ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC---SSCTTEEEEEECCSSSCCCCEEETTSTT--------
T ss_pred             -EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC---CCCCCEEEEEECCCCCceEEEEeCCCCC--------
Confidence             2222    2222223334444444      7889999999   776 6999999998   99999999863        


Q ss_pred             ceeeeee-ccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          210 DLLIKNI-NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       210 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ..+..+. +|...|.+++|+|.++++|++++.||.|++||++
T Consensus       252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~  293 (416)
T 2pm9_A          252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE  293 (416)
T ss_dssp             SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS
T ss_pred             CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC
Confidence            2334555 8999999999998788999999999999999974

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-31  Score=209.46  Aligned_cols=213  Identities=13%  Similarity=0.160  Sum_probs=163.1

Q ss_pred             EEcccceeeeee-ccCCCCCeeeEEEcC-CCCeEEEEecCCCeEEEEEccC---CCCcc-ceecCCCCCCCCCCcccCCC
Q 025649            5 IDIRQHCLYKSL-RAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSK---GRPNK-IVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         5 wd~~~~~~~~~l-~~~h~~~v~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |+ .+++++..+ . +|.+.|++++|+| +++ +|++|+.||+|++||+.+   +.... ....+            |..
T Consensus        48 w~-~~g~~~~~~~~-~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~------------h~~  112 (437)
T 3gre_A           48 GN-LRGKLIATLME-NEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD------------CSS  112 (437)
T ss_dssp             GG-CCCCEEEEECT-TTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE------------CSS
T ss_pred             cc-ccceEEeeecc-CCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccceeeecc------------CCC
Confidence            55 357888888 7 9999999999999 898 899999999999999976   43221 22222            678


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCC---CceeEeeccC---------C--CCCCcccee--ecccceeEE
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE---SELNISRSKS---------T--TKPLKGSQS--TSKVNIRDA  142 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~---~~~~~~~~~~---------~--~~~~~~~~~--~~~~~~~~~  142 (250)
                      .|.+++|+|      ++++|++++.||.|++||++   .++.......         +  ....+.++.  +++++.+++
T Consensus       113 ~v~~~~~~~------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (437)
T 3gre_A          113 TVTQITMIP------NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV  186 (437)
T ss_dssp             CEEEEEECT------TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred             CEEEEEEeC------CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence            999999998      99999999999999999995   3332221111         0  234555555  557888888


Q ss_pred             Ee---eeeeeccCeeeeeeccccC--ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee-
Q 025649          143 EM---EILDQSGGKRLHLDYSVGG--HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI-  216 (250)
Q Consensus       143 ~~---~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-  216 (250)
                      +.   +....++....+.+..+.+  |...|++++|+   |++++|++|+.||.|++||++++         .++..+. 
T Consensus       187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s---~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~  254 (437)
T 3gre_A          187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID---EECCVLILGTTRGIIDIWDIRFN---------VLIRSWSF  254 (437)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC---TTSCEEEEEETTSCEEEEETTTT---------EEEEEEBC
T ss_pred             EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC---CCCCEEEEEcCCCeEEEEEcCCc---------cEEEEEec
Confidence            42   1222233344455667776  88999999999   89999999999999999999987         4545543 


Q ss_pred             ccCCceeEEEecC---CCCCeEEEeeCCceEEEEeCC
Q 025649          217 NLNKKVNWLCTTP---TESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       217 ~~~~~v~~~~~~~---~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .|...|.+++|+|   +++.+|++|+.||.|++||++
T Consensus       255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV  291 (437)
T ss_dssp             TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred             CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence            7888999997775   367799999999999999974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.9e-32  Score=205.04  Aligned_cols=229  Identities=11%  Similarity=0.063  Sum_probs=168.1

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCC---CCeEEEEecCCCeEEEEEccCCC-CccceecCCCCCCCCCCcccC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPW---KPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~---~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      +|+|||+.+++.......+|...|.+++|+|+   +. +|++|+.||.|++||+.+++ .+..+. +            |
T Consensus        45 ~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~------------~  110 (357)
T 3i2n_A           45 VIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQR-YLATGDFGGNLHIWNLEAPEMPVYSVK-G------------H  110 (357)
T ss_dssp             EEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTC-CEEEEETTSCEEEECTTSCSSCSEEEC-C------------C
T ss_pred             EEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCc-eEEEecCCCeEEEEeCCCCCccEEEEE-e------------c
Confidence            48999999888765543379999999999999   57 89999999999999999887 666665 3            5


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce-eEeeccCCC---CCCcccee----ecccceeEEEee---
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL-NISRSKSTT---KPLKGSQS----TSKVNIRDAEME---  145 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~---  145 (250)
                      ...|.++.+.+...+.+++++|++++.|+.|++||++++. ....+....   ...+.++.    |+|+++++++.+   
T Consensus       111 ~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~  190 (357)
T 3i2n_A          111 KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG  190 (357)
T ss_dssp             SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS
T ss_pred             ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC
Confidence            7889999543322222399999999999999999999876 444443322   34677777    789999988421   


Q ss_pred             eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649          146 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL  225 (250)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (250)
                      ....++....+. .....|...|.+++|+|..++++++++++.||.|++||++++.....    .......+|...|.++
T Consensus       191 ~i~i~d~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~~v~~~  265 (357)
T 3i2n_A          191 DIKLFDLRNMAL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG----FASVSEKAHKSTVWQV  265 (357)
T ss_dssp             EEEEEETTTTEE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE----EEEEEEECCSSCEEEE
T ss_pred             eEEEEECccCce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc----eeeeccCCCcCCEEEE
Confidence            112222222222 22356788999999992111899999999999999999998643211    1112344899999999


Q ss_pred             EecCCCCC-eEEEeeCCceEEEEeC
Q 025649          226 CTTPTESE-NLVVCDTSKVVKVYSI  249 (250)
Q Consensus       226 ~~~~~~~~-~l~s~~~d~~i~vw~~  249 (250)
                      +|+| +++ +|++++.||.|++||+
T Consensus       266 ~~~~-~~~~~l~~~~~dg~i~iwd~  289 (357)
T 3i2n_A          266 RHLP-QNRELFLTAGGAGGLHLWKY  289 (357)
T ss_dssp             EEET-TEEEEEEEEETTSEEEEEEE
T ss_pred             EECC-CCCcEEEEEeCCCcEEEeec
Confidence            9998 666 8999999999999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=5.8e-32  Score=206.92  Aligned_cols=224  Identities=8%  Similarity=0.073  Sum_probs=176.3

Q ss_pred             CcEEEEcccceeeeeeccC-----CCCCeeeEEEcCC----CCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAG-----HSSICSSVQFIPW----KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNA   71 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~-----h~~~v~~l~~~~~----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~   71 (250)
                      +|++||+.+++.+..+. .     |...|.+++|+|+    +. +|++|+.||.|++||+.+++.+..+. +        
T Consensus        45 ~v~vw~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~-~--------  113 (366)
T 3k26_A           45 RVTLYECHSQGEIRLLQ-SYVDADADENFYTCAWTYDSNTSHP-LLAVAGSRGIIRIINPITMQCIKHYV-G--------  113 (366)
T ss_dssp             EEEEEEECGGGCEEEEE-EEECSCTTCCEEEEEEEECTTTCCE-EEEEEETTCEEEEECTTTCCEEEEEE-S--------
T ss_pred             EEEEEEcCCCcEEEeee-eccccCCCCcEEEEEeccCCCCCCC-EEEEecCCCEEEEEEchhceEeeeec-C--------
Confidence            37999999888777766 4     5578999999999    55 89999999999999999998887776 3        


Q ss_pred             CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeecc--CCCCCCccceeecccceeEEEee----
Q 025649           72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK--STTKPLKGSQSTSKVNIRDAEME----  145 (250)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----  145 (250)
                          |...|.+++|+|     .++++|++++.||.|++||+++++....+.  ..+...+.+++|+|++.++++.+    
T Consensus       114 ----~~~~i~~~~~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  184 (366)
T 3k26_A          114 ----HGNAINELKFHP-----RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS  184 (366)
T ss_dssp             ----CCSCEEEEEECS-----SCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ----CCCcEEEEEECC-----CCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCC
Confidence                578999999997     478999999999999999999988777663  34568899999999999998422    


Q ss_pred             --eeeeccCeee-------------------------eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecC
Q 025649          146 --ILDQSGGKRL-------------------------HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  198 (250)
Q Consensus       146 --~~~~~~~~~~-------------------------~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~  198 (250)
                        .|+.......                         .......+|...|.+++|+     ++++++++.|+.|++||++
T Consensus       185 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~d~~i~~wd~~  259 (366)
T 3k26_A          185 LKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-----GDLILSKSCENAIVCWKPG  259 (366)
T ss_dssp             EEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-----TTEEEEECSSSEEEEEEES
T ss_pred             EEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-----CCEEEEEecCCEEEEEeCC
Confidence              2332211100                         0011233489999999997     4699999999999999998


Q ss_pred             CCcceec-----ccccceeeeeeccCCceeEEEecCCC--CCeEEEeeCCceEEEEeCC
Q 025649          199 RFQGVQT-----SINNDLLIKNINLNKKVNWLCTTPTE--SENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       199 ~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~vw~~~  250 (250)
                      +......     ......+..+..|...|.+++|+| +  +++|++|+.||.|++||++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~  317 (366)
T 3k26_A          260 KMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLE  317 (366)
T ss_dssp             STTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECC
T ss_pred             CccccccccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECC
Confidence            8654211     011134567778999999999998 6  8999999999999999974

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.9e-32  Score=206.22  Aligned_cols=212  Identities=15%  Similarity=0.120  Sum_probs=160.0

Q ss_pred             CcEEEEccc-ceee-eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQ-HCLY-KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~-~~~~-~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|+|||+++ ++.+ ..+. +|...|.+++|+|+++ +|++++.||.|++||+++++.+....              |..
T Consensus        65 ~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~--------------~~~  128 (368)
T 3mmy_A           65 DVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGS-KVFTASCDKTAKMWDLSSNQAIQIAQ--------------HDA  128 (368)
T ss_dssp             EEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE--------------CSS
T ss_pred             cEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCC-EEEEEcCCCcEEEEEcCCCCceeecc--------------ccC
Confidence            489999987 5554 7788 9999999999999999 89999999999999999888766443              678


Q ss_pred             ceeEEec--CCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCC-------------------------------
Q 025649           79 FVHAIAI--PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT-------------------------------  125 (250)
Q Consensus        79 ~v~~~~~--~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-------------------------------  125 (250)
                      .|.+++|  +|      ++++|++++.||.|++||+++++....+..+.                               
T Consensus       129 ~v~~~~~~~~~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  202 (368)
T 3mmy_A          129 PVKTIHWIKAP------NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPS  202 (368)
T ss_dssp             CEEEEEEEECS------SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE
T ss_pred             ceEEEEEEeCC------CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccc
Confidence            8999999  77      89999999999999999999876554443321                               


Q ss_pred             ---------CCCccceeeccccee----EEE------eeeeeeccCeeeeeeccccCccc------------cEEEEEee
Q 025649          126 ---------KPLKGSQSTSKVNIR----DAE------MEILDQSGGKRLHLDYSVGGHTA------------AASCVAFS  174 (250)
Q Consensus       126 ---------~~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~~~~~h~~------------~v~~~~~~  174 (250)
                               .....++.+.++...    +++      +..|+.........+..+.+|..            .|.+++|+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  282 (368)
T 3mmy_A          203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH  282 (368)
T ss_dssp             EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC
T ss_pred             hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe
Confidence                     111222222222211    321      11222222211133445566665            79999999


Q ss_pred             cCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649          175 MFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY  247 (250)
Q Consensus       175 p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw  247 (250)
                         |++++|++|+.||.|++||++++         +++..+..|...|.+++|+| ++++|++++.|+..+.|
T Consensus       283 ---p~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~~~~~  342 (368)
T 3mmy_A          283 ---PVHGTLATVGSDGRFSFWDKDAR---------TKLKTSEQLDQPISACCFNH-NGNIFAYASSYDWSKGH  342 (368)
T ss_dssp             ---TTTCCEEEEETTSCEEEEETTTT---------EEEEECCCCSSCEEEEEECT-TSSCEEEEECCCSTTCG
T ss_pred             ---cCCCEEEEEccCCeEEEEECCCC---------cEEEEecCCCCCceEEEECC-CCCeEEEEecccccccc
Confidence               89999999999999999999987         66677789999999999998 89999999988754443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.8e-31  Score=209.67  Aligned_cols=227  Identities=12%  Similarity=0.138  Sum_probs=161.6

Q ss_pred             CcEEEEcccce-----------eeeeeccCCC------------CCeeeEEEcCCC--CeEEEEecCCCeEEEEEccCCC
Q 025649            1 MWQIIDIRQHC-----------LYKSLRAGHS------------SICSSVQFIPWK--PWEVISGGLDSKLVMWDFSKGR   55 (250)
Q Consensus         1 ti~iwd~~~~~-----------~~~~l~~~h~------------~~v~~l~~~~~~--~~~l~s~s~dg~v~iwd~~~~~   55 (250)
                      +|+|||+.+++           ....+. +|.            ..|.+++|+|++  . +|++++.|++|++||+.+++
T Consensus        51 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~-~l~s~s~d~~i~iw~~~~~~  128 (447)
T 3dw8_B           51 RVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLPQKNAA-QFLLSTNDKTIKLWKISERD  128 (447)
T ss_dssp             EEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECCCCSSS-EEEEEECSSCEEEEEEEEEE
T ss_pred             eEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcCCCCcc-eEEEeCCCCeEEEEeccccc
Confidence            48999999877           578888 998            889999999998  6 89999999999999997643


Q ss_pred             Cccc-eecCCCC-------CCCC-------------------CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEE
Q 025649           56 PNKI-VNFGLPE-------NNGN-------------------AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD  108 (250)
Q Consensus        56 ~~~~-~~~~~~~-------~~~~-------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~  108 (250)
                      .... +......       ....                   .....|...|.+++|+|      ++++|++| .|+.|+
T Consensus       129 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------~~~~l~s~-~d~~i~  201 (447)
T 3dw8_B          129 KRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS------DYETYLSA-DDLRIN  201 (447)
T ss_dssp             EEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT------TSSEEEEE-CSSEEE
T ss_pred             CCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC------CCCEEEEe-CCCeEE
Confidence            3110 0000000       0000                   00123788999999999      99999998 799999


Q ss_pred             EEeCCCc-eeEeec------cCCCCCCccceeecccc-eeEEE------eeeeeeccCee-eeeeccccCccc-------
Q 025649          109 VINIESE-LNISRS------KSTTKPLKGSQSTSKVN-IRDAE------MEILDQSGGKR-LHLDYSVGGHTA-------  166 (250)
Q Consensus       109 ~~d~~~~-~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~-~~~~~~~~~h~~-------  166 (250)
                      +||++.. +.....      ...+...+.+++|+|++ .++++      +..|+...... ...+..+.+|..       
T Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (447)
T 3dw8_B          202 LWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFF  281 (447)
T ss_dssp             EEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHH
T ss_pred             EEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccc
Confidence            9999953 333321      22345789999999998 77774      22333332221 111455666665       


Q ss_pred             -----cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC-CcceecccccceeeeeeccCCc---------------eeEE
Q 025649          167 -----AASCVAFSMFGERGKYLISGGNDKLVKVWDCSR-FQGVQTSINNDLLIKNINLNKK---------------VNWL  225 (250)
Q Consensus       167 -----~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~---------------v~~~  225 (250)
                           .|.+++|+   |+|++|++++. +.|++||++. +         .++..+..|...               +..+
T Consensus       282 ~~~~~~v~~~~~s---~~g~~l~~~~~-~~v~iwd~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~  348 (447)
T 3dw8_B          282 SEIISSISDVKFS---HSGRYMMTRDY-LSVKVWDLNMEN---------RPVETYQVHEYLRSKLCSLYENDCIFDKFEC  348 (447)
T ss_dssp             HHHTTCEEEEEEC---TTSSEEEEEES-SEEEEEETTCCS---------SCSCCEESCGGGTTTHHHHHHTSGGGCCCCE
T ss_pred             cccCceEEEEEEC---CCCCEEEEeeC-CeEEEEeCCCCc---------cccceeeccccccccccccccccccccceEE
Confidence                 89999999   89999999998 9999999987 5         444455566432               3348


Q ss_pred             EecCCCCCeEEEeeCCceEEEEeCC
Q 025649          226 CTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       226 ~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +|+| ++++|++|+.||.|++||+.
T Consensus       349 ~~s~-~~~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          349 CWNG-SDSVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             EECT-TSSEEEEECSTTEEEEEETT
T ss_pred             EECC-CCCEEEEeccCCEEEEEEcC
Confidence            9998 88999999999999999974

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-30  Score=194.53  Aligned_cols=225  Identities=12%  Similarity=0.070  Sum_probs=170.8

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC---CccceecCCCCC----------
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR---PNKIVNFGLPEN----------   67 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~~----------   67 (250)
                      +|++||+.+++....+. .|...|.+++|+|+++ +|++++.||.|++|++....   .+..+..+....          
T Consensus        40 ~v~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l  117 (313)
T 3odt_A           40 TVRLWSKDDQWLGTVVY-TGQGFLNSVCYDSEKE-LLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVV  117 (313)
T ss_dssp             EEEEEEESSSEEEEEEE-ECSSCEEEEEEETTTT-EEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEE
T ss_pred             cEEEEECCCCEEEEEee-cCCccEEEEEECCCCC-EEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEE
Confidence            48999999999999999 9999999999999999 89999999999999987542   333332110000          


Q ss_pred             ---------------CCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccce
Q 025649           68 ---------------NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ  132 (250)
Q Consensus        68 ---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  132 (250)
                                     ........+...+.++.+.|     ++++++++++.|+.|++||.  +.........+...+.++
T Consensus       118 ~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~  190 (313)
T 3odt_A          118 ISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVS-----FSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHL  190 (313)
T ss_dssp             EEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEE-----TTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEE
T ss_pred             EEEeCCCCEEEEcCCcEEEecccCCCceeEEEEcc-----CCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEE
Confidence                           00001122455666666655     57889999999999999993  344455555466889999


Q ss_pred             eecccceeEEEe---eeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccc
Q 025649          133 STSKVNIRDAEM---EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN  209 (250)
Q Consensus       133 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  209 (250)
                      +++|++. +++.   +....++....+.+..+.+|...|.+++|+   |++ .+++++.||.|++||++++         
T Consensus       191 ~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~---~~~-~l~~~~~dg~v~iwd~~~~---------  256 (313)
T 3odt_A          191 AVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL---PNG-DIVSCGEDRTVRIWSKENG---------  256 (313)
T ss_dssp             EEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC---TTS-CEEEEETTSEEEEECTTTC---------
T ss_pred             EEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe---cCC-CEEEEecCCEEEEEECCCC---------
Confidence            9999999 5421   112223334455667788999999999999   788 5889999999999999997         


Q ss_pred             ceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          210 DLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +.+..+..|...|.+++|+| +++ +++++.||.|++||++
T Consensus       257 ~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          257 SLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             CEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEEEESC
T ss_pred             ceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEEEeCC
Confidence            66677788999999999998 776 6779999999999974

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-32  Score=211.00  Aligned_cols=212  Identities=15%  Similarity=0.169  Sum_probs=167.6

Q ss_pred             CcEEEEcccceeeeeeccC--CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAG--HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~--h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|++||+.+++.+..+. +  |...|++++|+|++. +|++|+.||.|++||+++++++..+..+            +..
T Consensus       193 ~i~iwd~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~~  258 (437)
T 3gre_A          193 RVIIFDIRTLERLQIIE-NSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFG------------DHA  258 (437)
T ss_dssp             EEEEEETTTCCEEEEEE-CCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCT------------TCE
T ss_pred             eEEEEeCCCCeeeEEEc-cCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecC------------CCC
Confidence            48999999999999999 7  899999999999999 8999999999999999998888877644            567


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD  158 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (250)
                      .|.+++++|.  +.+++.+|++++.||.|++||+++++....+..+ ...+..+.|+|+++.+.               .
T Consensus       259 ~v~~~~~~~~--~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~---------------~  320 (437)
T 3gre_A          259 PITHVEVCQF--YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINS-DEQPSMEHFLPIEKGLE---------------E  320 (437)
T ss_dssp             EEEEEEECTT--TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESS-SSCCCGGGGSCBCSSGG---------------G
T ss_pred             ceEEEEeccc--cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcC-CCCCccceecccccccc---------------c
Confidence            8999955541  1127889999999999999999999887776655 36677888998876653               1


Q ss_pred             ccccC--ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccc---------------------------
Q 025649          159 YSVGG--HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN---------------------------  209 (250)
Q Consensus       159 ~~~~~--h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------------------------  209 (250)
                      ..+.+  |...|.+++|+    ++++|++|+.|+.|++||+++++........                           
T Consensus       321 ~~~~~~~~~~~v~~l~~~----~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (437)
T 3gre_A          321 LNFCGIRSLNALSTISVS----NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTS  396 (437)
T ss_dssp             CCCCCCCSGGGGCCEEEE----TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC---
T ss_pred             ceecccccCCceEEEEEC----CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccccc
Confidence            12445  89999999998    4589999999999999999988654321110                           


Q ss_pred             -ceeeeeeccCCceeEEEecCC-CCCeEEEeeCCceEEEEe
Q 025649          210 -DLLIKNINLNKKVNWLCTTPT-ESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       210 -~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~vw~  248 (250)
                       ........|...|++++|.+. ++.+|++|+.||.|+||+
T Consensus       397 ~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          397 THSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ----------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence             000112238999999999984 367899999999999995

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=6.6e-31  Score=200.70  Aligned_cols=208  Identities=12%  Similarity=0.055  Sum_probs=146.8

Q ss_pred             EEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEE
Q 025649            4 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI   83 (250)
Q Consensus         4 iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   83 (250)
                      ||++.+.+.+..++ +|.+.|.+++|+|+++ +|++|+.++ +++||+.+++.......               ..+..+
T Consensus         3 i~s~~~~~~~~~~~-~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~~~---------------~~~~~~   64 (355)
T 3vu4_A            3 LGSMITRNPIVPEN-HVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQEM---------------RHLSKV   64 (355)
T ss_dssp             -----------------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEEEC---------------SCCCEE
T ss_pred             cccccccCCccccc-cCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeeeec---------------CCeEEE
Confidence            67778888888888 9999999999999999 899988775 78999987665544331               235667


Q ss_pred             ecCCCcccCCCCCEE-EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE---eeeeeec---------
Q 025649           84 AIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQS---------  150 (250)
Q Consensus        84 ~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---------  150 (250)
                      .+.+      +++.+ ++++.|+.|++||+.+++.+..+...  ..+.++.++++...++.   +..|+..         
T Consensus        65 ~~~~------~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~  136 (355)
T 3vu4_A           65 RMLH------RTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVD--APVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDD  136 (355)
T ss_dssp             EECT------TSSEEEEECSSTTEEEEEETTTTEEEEEEECS--SCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCC
T ss_pred             EEcC------CCCEEEEEECCccEEEEEECCCCcEEEEEECC--CceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEe
Confidence            7776      56665 67788899999999998887766543  56777777776533322   1111111         


Q ss_pred             ----------------------------cCeee---------------ee-eccccCccccEEEEEeecCCCCCcEEEEe
Q 025649          151 ----------------------------GGKRL---------------HL-DYSVGGHTAAASCVAFSMFGERGKYLISG  186 (250)
Q Consensus       151 ----------------------------~~~~~---------------~~-~~~~~~h~~~v~~~~~~p~~~~~~~l~s~  186 (250)
                                                  +....               ++ +..+.+|...|.+++|+   |+|++|++|
T Consensus       137 ~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s---~~g~~l~s~  213 (355)
T 3vu4_A          137 IRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN---RKSDMVATC  213 (355)
T ss_dssp             EEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC---TTSSEEEEE
T ss_pred             ccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC---CCCCEEEEE
Confidence                                        11111               11 56788999999999999   899999999


Q ss_pred             eCCCe-EEEEecCCCcceecccccceeeeee-c-cCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          187 GNDKL-VKVWDCSRFQGVQTSINNDLLIKNI-N-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       187 ~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +.|++ |++||++++         +.+..+. + |...|.+++|+| ++++|++++.|+.|++||++
T Consensus       214 s~d~~~v~iwd~~~~---------~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          214 SQDGTIIRVFKTEDG---------VLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             ETTCSEEEEEETTTC---------CEEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEESS
T ss_pred             eCCCCEEEEEECCCC---------cEEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEEcc
Confidence            99998 999999997         5555665 5 999999999998 89999999999999999974

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-30  Score=202.13  Aligned_cols=213  Identities=12%  Similarity=0.123  Sum_probs=170.6

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+.+++....+...|...|.+++|+|+++ +|++|+.||.|++||+.+++.+..+. +            |...|
T Consensus       114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~------------~~~~v  179 (401)
T 4aez_A          114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGS-FLSVGLGNGLVDIYDVESQTKLRTMA-G------------HQARV  179 (401)
T ss_dssp             EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEEC-C------------CSSCE
T ss_pred             eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCC-EEEEECCCCeEEEEECcCCeEEEEec-C------------CCCce
Confidence            4899999999998888834899999999999999 89999999999999999998887776 3            57889


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHL  157 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  157 (250)
                      .+++|+        ++++++++.||.|++||++...........+...+.+++|+|++.++++.+   ....++....+.
T Consensus       180 ~~~~~~--------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~  251 (401)
T 4aez_A          180 GCLSWN--------RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP  251 (401)
T ss_dssp             EEEEEE--------TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE
T ss_pred             EEEEEC--------CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc
Confidence            999885        469999999999999999954433333334458899999999999998422   122233344455


Q ss_pred             eccccCccccEEEEEeecCCCCC-cEEEEee--CCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649          158 DYSVGGHTAAASCVAFSMFGERG-KYLISGG--NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~~-~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  234 (250)
                      +..+..|...|.+++|+   |++ .++++++  .|+.|++||++++         ..+..+ .+...|.+++|+| ++++
T Consensus       252 ~~~~~~~~~~v~~~~~~---p~~~~ll~~~~gs~d~~i~i~d~~~~---------~~~~~~-~~~~~v~~~~~s~-~~~~  317 (401)
T 4aez_A          252 KFTKTNHNAAVKAVAWC---PWQSNLLATGGGTMDKQIHFWNAATG---------ARVNTV-DAGSQVTSLIWSP-HSKE  317 (401)
T ss_dssp             EEEECCCSSCCCEEEEC---TTSTTEEEEECCTTTCEEEEEETTTC---------CEEEEE-ECSSCEEEEEECS-SSSE
T ss_pred             cEEecCCcceEEEEEEC---CCCCCEEEEecCCCCCEEEEEECCCC---------CEEEEE-eCCCcEEEEEECC-CCCe
Confidence            66778899999999999   654 5677765  7999999999987         333333 4677899999998 8888


Q ss_pred             EEE--eeCCceEEEEeC
Q 025649          235 LVV--CDTSKVVKVYSI  249 (250)
Q Consensus       235 l~s--~~~d~~i~vw~~  249 (250)
                      +++  |+.||.|++||+
T Consensus       318 l~~~~g~~dg~i~v~~~  334 (401)
T 4aez_A          318 IMSTHGFPDNNLSIWSY  334 (401)
T ss_dssp             EEEEECTTTCEEEEEEE
T ss_pred             EEEEeecCCCcEEEEec
Confidence            888  558999999996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.9e-30  Score=225.22  Aligned_cols=216  Identities=10%  Similarity=0.120  Sum_probs=181.6

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+.+++.+..+. +|.+.|.+++|+|+++ +|++|+.||+|++||+.+++.+..+. +            |...|
T Consensus       638 ~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~-~------------~~~~v  702 (1249)
T 3sfz_A          638 TLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGKLVHTYD-E------------HSEQV  702 (1249)
T ss_dssp             CEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE-C------------CSSCE
T ss_pred             eEEEEECCCCCEEEEec-cCCCCEEEEEEecCCC-EEEEEeCCCeEEEEECCCCceEEEEc-C------------CCCcE
Confidence            58999999999999999 9999999999999999 89999999999999999999888886 3            57889


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKR  154 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  154 (250)
                      .+++|+|    +.++.++++++.|+.|++||+++++.......+ ...+.+++|+|+++.+++      +..|+......
T Consensus       703 ~~~~~~~----~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~  777 (1249)
T 3sfz_A          703 NCCHFTN----KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH-TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE  777 (1249)
T ss_dssp             EEEEECS----SSSCCEEEEEETTSCEEEEETTSSSEEEEECCC-SSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred             EEEEEec----CCCceEEEEEeCCCeEEEEECCCcchhheecCC-CCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence            9999998    224568999999999999999998877766654 478999999999998884      22344322211


Q ss_pred             eee---------------------------------------------------ecc-ccCccccEEEEEeecCCCCCcE
Q 025649          155 LHL---------------------------------------------------DYS-VGGHTAAASCVAFSMFGERGKY  182 (250)
Q Consensus       155 ~~~---------------------------------------------------~~~-~~~h~~~v~~~~~~p~~~~~~~  182 (250)
                      ...                                                   +.. ..+|...|.+++|+   |++++
T Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s---p~~~~  854 (1249)
T 3sfz_A          778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS---PYDHL  854 (1249)
T ss_dssp             EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC---SSTTE
T ss_pred             cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc---CCCCE
Confidence            100                                                   011 12678889999999   89999


Q ss_pred             EEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          183 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       183 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +++++.||.|++||+.++         ..+....+|...|.+++|+| ++++|++++.||.|++|++
T Consensus       855 l~~~~~dg~v~vwd~~~~---------~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          855 AVIALSQYCVELWNIDSR---------LKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             EEEECSSSCEEEEETTTT---------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEH
T ss_pred             EEEEeCCCeEEEEEcCCC---------ceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEc
Confidence            999999999999999987         56677889999999999998 8999999999999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=9.1e-31  Score=199.11  Aligned_cols=214  Identities=11%  Similarity=0.069  Sum_probs=160.0

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc---------CCCCccceecCCCCCCCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS---------KGRPNKIVNFGLPENNGNA   71 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~---------~~~~~~~~~~~~~~~~~~~   71 (250)
                      +|++||+++++.+..+.   ...|.++.|+|+    +++++.|++|++|+..         +++.+..+..+        
T Consensus        59 ~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~--------  123 (343)
T 3lrv_A           59 ALHFTQLKDSKTITTIT---TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD--------  123 (343)
T ss_dssp             EEEEEEESSSSCEEEEE---EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC--------
T ss_pred             cEEEEECCCCcEEEEEe---cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC--------
Confidence            48999999999888886   467888899987    8999999999999765         33333344333        


Q ss_pred             CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee---
Q 025649           72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD---  148 (250)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  148 (250)
                          |...|.+++++|    ..+++++++++.||.|++||+++++............+.+++|+|++.++++ +..|   
T Consensus       124 ----~~~~v~~~~~~~----~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~las-g~~dg~i  194 (343)
T 3lrv_A          124 ----SANEIIYMYGHN----EVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLAL-YSPDGIL  194 (343)
T ss_dssp             ----CSSCEEEEECCC-------CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEE-ECTTSCE
T ss_pred             ----CCCCEEEEEcCC----CCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEE-EcCCCEE
Confidence                557899999986    1268899999999999999999988866655555567999999999999984 2222   


Q ss_pred             -eccCeeeeee-ccccC-ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee--
Q 025649          149 -QSGGKRLHLD-YSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN--  223 (250)
Q Consensus       149 -~~~~~~~~~~-~~~~~-h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~--  223 (250)
                       .++....+.+ ..+.+ |...|.+++|+   |++.+|++++ |+.|++||+++.....      .+..+..|...+.  
T Consensus       195 ~iwd~~~~~~~~~~~~~~h~~~v~~l~fs---~~g~~l~s~~-~~~v~iwd~~~~~~~~------~~~~~~~~~~~~~~~  264 (343)
T 3lrv_A          195 DVYNLSSPDQASSRFPVDEEAKIKEVKFA---DNGYWMVVEC-DQTVVCFDLRKDVGTL------AYPTYTIPEFKTGTV  264 (343)
T ss_dssp             EEEESSCTTSCCEECCCCTTSCEEEEEEC---TTSSEEEEEE-SSBEEEEETTSSTTCB------SSCCCBC-----CCE
T ss_pred             EEEECCCCCCCccEEeccCCCCEEEEEEe---CCCCEEEEEe-CCeEEEEEcCCCCcce------eecccccccccccce
Confidence             2223333333 46676 99999999999   8999999999 5599999999975432      1112222333444  


Q ss_pred             EEEecCCCCCeEEEeeC-CceEEEEeC
Q 025649          224 WLCTTPTESENLVVCDT-SKVVKVYSI  249 (250)
Q Consensus       224 ~~~~~~~~~~~l~s~~~-d~~i~vw~~  249 (250)
                      +++|+| ++++|++++. |+.|++|++
T Consensus       265 ~~~~~~-~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          265 TYDIDD-SGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             EEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             EEEECC-CCCEEEEecCCCCcEEEEEE
Confidence            599998 8999999888 999999986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.98  E-value=2e-30  Score=199.98  Aligned_cols=210  Identities=7%  Similarity=0.015  Sum_probs=157.1

Q ss_pred             CcEEEEcccceeeeeec--cCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHCLYKSLR--AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|++||+.+ +.+..+.  .+|...|.+++|+|+++ +|++|+.|+.|++||+ +++.+..+. .            |..
T Consensus       142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~-~~~~~~~~~-~------------h~~  205 (383)
T 3ei3_B          142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGL-DGHEIFKEK-L------------HKA  205 (383)
T ss_dssp             EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEET-TSCEEEEEE-C------------SSS
T ss_pred             EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEEC-CCCEEEEec-c------------CCC
Confidence            489999985 4455554  13458899999999999 8999999999999999 466666665 2            578


Q ss_pred             ceeEEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCC----ceeEeeccCCCCCCccceeecc-cceeEEEee---eeee
Q 025649           79 FVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIES----ELNISRSKSTTKPLKGSQSTSK-VNIRDAEME---ILDQ  149 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~  149 (250)
                      .|.+++|+|      +++ ++++++.|+.|++||+++    +......  .+...+.+++|+| ++.++++.+   ....
T Consensus       206 ~v~~~~~~~------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~i  277 (383)
T 3ei3_B          206 KVTHAEFNP------RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRV  277 (383)
T ss_dssp             CEEEEEECS------SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred             cEEEEEECC------CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence            899999999      888 999999999999999997    4444444  3457899999999 999998422   1112


Q ss_pred             ccCeeeeeeccccC-------cc----------ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccccee
Q 025649          150 SGGKRLHLDYSVGG-------HT----------AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL  212 (250)
Q Consensus       150 ~~~~~~~~~~~~~~-------h~----------~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  212 (250)
                      ++....+....+.+       |.          ..+..++|+   |++++  +|+.|+.|++||++++         +.+
T Consensus       278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s---~dg~~--s~s~d~~i~iwd~~~~---------~~~  343 (383)
T 3ei3_B          278 YSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY---PDDQL--LLNDKRTIDIYDANSG---------GLV  343 (383)
T ss_dssp             EETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECB---CCTTT--CTTCCCCEEEEETTTC---------CEE
T ss_pred             EECCCCccccccccccccccccccceEEeccCCCCceEEEec---CCccc--ccCCCCeEEEEecCCC---------cee
Confidence            22222222222222       22          344557777   67776  8889999999999997         555


Q ss_pred             eeeec--cCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          213 IKNIN--LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       213 ~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ..+.+  |...+..++|+| ++++|++|+ |+.|++||++
T Consensus       344 ~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          344 HQLRDPNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRE  381 (383)
T ss_dssp             EEECBTTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC
T ss_pred             eeecCCCCCceEEEEEEec-CccEEEEec-CCcEEEEecC
Confidence            56655  456677779998 899999997 9999999984

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=1.2e-30  Score=202.54  Aligned_cols=216  Identities=12%  Similarity=0.094  Sum_probs=167.9

Q ss_pred             CcEEEEcccc-------eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcccee-cCCCCCCCCCC
Q 025649            1 MWQIIDIRQH-------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN-FGLPENNGNAG   72 (250)
Q Consensus         1 ti~iwd~~~~-------~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~   72 (250)
                      +|+|||+.++       +.+..+. +|...|.+++|+|+++.+|++++.||.|++||+++++.+..+. ..         
T Consensus       105 ~v~vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------  174 (402)
T 2aq5_A          105 TVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV---------  174 (402)
T ss_dssp             EEEEEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT---------
T ss_pred             eEEEEEccCCCCccccCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC---------
Confidence            4899999987       6678888 9999999999999984489999999999999999998877773 23         


Q ss_pred             cccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec-cCCCCCCccceeecccceeEEEe------e
Q 025649           73 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS-KSTTKPLKGSQSTSKVNIRDAEM------E  145 (250)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~  145 (250)
                         |...|.+++|+|      ++++|++++.|+.|++||+++++....+ ..+....+.++.|+|++.++++.      +
T Consensus       175 ---~~~~v~~~~~~~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~  245 (402)
T 2aq5_A          175 ---HPDTIYSVDWSR------DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER  245 (402)
T ss_dssp             ---CCSCEEEEEECT------TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred             ---CCCceEEEEECC------CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence               578899999999      9999999999999999999999888777 45544558999999999988842      1


Q ss_pred             eeeeccCeeeee-eccc-cCccccEEEEEeecCCCCCcEEE-EeeCCCeEEEEecCCCcceecccccceeeeeec--cCC
Q 025649          146 ILDQSGGKRLHL-DYSV-GGHTAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN--LNK  220 (250)
Q Consensus       146 ~~~~~~~~~~~~-~~~~-~~h~~~v~~~~~~p~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~  220 (250)
                      ....++...... +... ..|...+.+++|+   |++++|+ +|+.||.|++||+.++..        .+..+..  |..
T Consensus       246 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~g~~dg~i~i~d~~~~~~--------~~~~l~~~~~~~  314 (402)
T 2aq5_A          246 QVALWDTKHLEEPLSLQELDTSSGVLLPFFD---PDTNIVYLCGKGDSSIRYFEITSEAP--------FLHYLSMFSSKE  314 (402)
T ss_dssp             EEEEEETTBCSSCSEEEECCCCSSCEEEEEE---TTTTEEEEEETTCSCEEEEEECSSTT--------CEEEEEEECCSS
T ss_pred             eEEEEcCccccCCceEEeccCCCceeEEEEc---CCCCEEEEEEcCCCeEEEEEecCCCc--------ceEeecccccCC
Confidence            112222222111 1111 2466789999999   8888886 566799999999998742        1223333  568


Q ss_pred             ceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          221 KVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       221 ~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .|.+++|+| ++.++++  .++.+++|++
T Consensus       315 ~v~~~~~sp-~~~~~~s--~~~~~~~~~l  340 (402)
T 2aq5_A          315 SQRGMGYMP-KRGLEVN--KCEIARFYKL  340 (402)
T ss_dssp             CCSEEEECC-GGGSCGG--GTEEEEEEEE
T ss_pred             cccceEEec-cccccee--cceeEEEEEc
Confidence            999999998 7776654  5679999986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.98  E-value=6.2e-30  Score=200.46  Aligned_cols=205  Identities=16%  Similarity=0.242  Sum_probs=169.4

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+.+++.+..+. +|...|.+++|  ++. +|++|+.||+|++||+.+++.+..+. +            |...|
T Consensus       154 ~i~iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~-~------------h~~~v  216 (435)
T 1p22_A          154 TIKIWDKNTLECKRILT-GHTGSVLCLQY--DER-VIITGSSDSTVRVWDVNTGEMLNTLI-H------------HCEAV  216 (435)
T ss_dssp             CEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSS-EEEEEETTSCEEEEESSSCCEEEEEC-C------------CCSCE
T ss_pred             eEEEEeCCCCeEEEEEc-CCCCcEEEEEE--CCC-EEEEEcCCCeEEEEECCCCcEEEEEc-C------------CCCcE
Confidence            58999999999999999 99999999999  566 89999999999999999998887776 2            57789


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe--eccCCCCCCccceeecccceeEEEe---eeeeeccCeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS--RSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSGGKRL  155 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  155 (250)
                      .++++++        ..+++|+.||.|++||++++....  .....+...+.++++  +++++++.   +....++....
T Consensus       217 ~~l~~~~--------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~  286 (435)
T 1p22_A          217 LHLRFNN--------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC  286 (435)
T ss_dssp             EEEECCT--------TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC
T ss_pred             EEEEEcC--------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC
Confidence            9999874        489999999999999999876442  333344577888888  67777732   12223334445


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                      +.+..+.+|...|.++.|+     ++++++|+.||.|++||++++         ..+..+.+|...|.++++   ++.+|
T Consensus       287 ~~~~~~~~~~~~v~~~~~~-----~~~l~~g~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~~~~---~~~~l  349 (435)
T 1p22_A          287 EFVRTLNGHKRGIACLQYR-----DRLVVSGSSDNTIRLWDIECG---------ACLRVLEGHEELVRCIRF---DNKRI  349 (435)
T ss_dssp             CEEEEEECCSSCEEEEEEE-----TTEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEC---CSSEE
T ss_pred             cEEEEEcCCCCcEEEEEeC-----CCEEEEEeCCCeEEEEECCCC---------CEEEEEeCCcCcEEEEEe---cCCEE
Confidence            5677888999999999986     479999999999999999997         666778899999999988   56799


Q ss_pred             EEeeCCceEEEEeC
Q 025649          236 VVCDTSKVVKVYSI  249 (250)
Q Consensus       236 ~s~~~d~~i~vw~~  249 (250)
                      ++|+.||.|++||+
T Consensus       350 ~sg~~dg~i~vwd~  363 (435)
T 1p22_A          350 VSGAYDGKIKVWDL  363 (435)
T ss_dssp             EEEETTSCEEEEEH
T ss_pred             EEEeCCCcEEEEEC
Confidence            99999999999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.98  E-value=3.3e-30  Score=209.88  Aligned_cols=211  Identities=15%  Similarity=0.158  Sum_probs=174.2

Q ss_pred             CcEEEEcccc----eeeeeeccCCCCC-eeeEEEcC--CCCeEEEEecCCCeEEEEEccCC--------CCccceecCCC
Q 025649            1 MWQIIDIRQH----CLYKSLRAGHSSI-CSSVQFIP--WKPWEVISGGLDSKLVMWDFSKG--------RPNKIVNFGLP   65 (250)
Q Consensus         1 ti~iwd~~~~----~~~~~l~~~h~~~-v~~l~~~~--~~~~~l~s~s~dg~v~iwd~~~~--------~~~~~~~~~~~   65 (250)
                      +|++||++++    +....+. +|... |++++|+|  +++ +|++|+.||.|++||+.++        +.+..+. .  
T Consensus        40 ~v~v~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-~--  114 (615)
T 1pgu_A           40 SAFVRCLDDGDSKVPPVVQFT-GHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-V--  114 (615)
T ss_dssp             EEEEEECCSSCCSSCSEEEEC-TTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-C--
T ss_pred             eEEEEECCCCCCccccceEEe-cCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCcccccccccccchhh-c--
Confidence            3789999999    8899999 99999 99999999  999 8999999999999999755        3444444 1  


Q ss_pred             CCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC----CeEEEEeCCCceeEeeccCCCCCCccceeecccce-e
Q 025649           66 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI-R  140 (250)
Q Consensus        66 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  140 (250)
                                +...|.+++|+|      ++++|++++.+    +.|.+||  .++....+.. +...+.+++|+|+++ .
T Consensus       115 ----------~~~~v~~~~~s~------~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~-~~~~v~~~~~~~~~~~~  175 (615)
T 1pgu_A          115 ----------LAGPISDISWDF------EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSG-HSQRINACHLKQSRPMR  175 (615)
T ss_dssp             ----------CSSCEEEEEECT------TSSEEEEEECCSSCSEEEEETT--TCCEEEECCS-CSSCEEEEEECSSSSCE
T ss_pred             ----------ccccEEEEEEeC------CCCEEEEeccCCCCccEEEEEE--CCCcceeeec-CCccEEEEEECCCCCcE
Confidence                      467899999999      99999999987    7899998  4444444443 457899999999998 4


Q ss_pred             EEEeee----eeeccCeeeeeeccccCccc---cEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCCcceeccccccee
Q 025649          141 DAEMEI----LDQSGGKRLHLDYSVGGHTA---AASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL  212 (250)
Q Consensus       141 ~~~~~~----~~~~~~~~~~~~~~~~~h~~---~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  212 (250)
                      ++ .+.    ...++....+.+..+.+|..   .|.+++|+   |+ +++|++++.||.|++||++++         +.+
T Consensus       176 l~-~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~vwd~~~~---------~~~  242 (615)
T 1pgu_A          176 SM-TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS---PDSGEFVITVGSDRKISCFDGKSG---------EFL  242 (615)
T ss_dssp             EE-EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC---STTCCEEEEEETTCCEEEEETTTC---------CEE
T ss_pred             EE-EEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC---CCCCCEEEEEeCCCeEEEEECCCC---------CEe
Confidence            55 333    22333445566678888998   99999999   88 999999999999999999987         454


Q ss_pred             eee-e---ccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          213 IKN-I---NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       213 ~~~-~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ..+ .   .|...|.+++|+  ++++|++++.|+.|++||++
T Consensus       243 ~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~  282 (615)
T 1pgu_A          243 KYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVT  282 (615)
T ss_dssp             EECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETT
T ss_pred             EEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECC
Confidence            555 4   899999999998  78899999999999999974

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=2e-29  Score=197.94  Aligned_cols=199  Identities=10%  Similarity=0.035  Sum_probs=152.7

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC-----------ccceecCCCCCCCCCCcccCC-----------
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-----------NKIVNFGLPENNGNAGQCYNP-----------   77 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-----------   77 (250)
                      |.+.|++++|+|+++ +|++|+.||.|++||+.+++.           ...+. +            |.           
T Consensus        27 ~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~------------h~~~~~~~~~~~~   92 (447)
T 3dw8_B           27 EADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-S------------HEPEFDYLKSLEI   92 (447)
T ss_dssp             GGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-C------------CCCEEEGGGTEEE
T ss_pred             ccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-c------------ccccccccccccc
Confidence            678999999999999 899999999999999987762           33343 2            44           


Q ss_pred             -CceeEEecCCCcccCCCC--CEEEEEeCCCeEEEEeCCCceeEe-----------------------------------
Q 025649           78 -AFVHAIAIPDADMLDKTN--KICVVAKGDGVVDVINIESELNIS-----------------------------------  119 (250)
Q Consensus        78 -~~v~~~~~~~~~~~~~~~--~~l~~~~~d~~i~~~d~~~~~~~~-----------------------------------  119 (250)
                       ..|.+++|+|      ++  .+|++++.|+.|++||+.++....                                   
T Consensus        93 ~~~V~~l~~~~------~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  166 (447)
T 3dw8_B           93 EEKINKIRWLP------QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA  166 (447)
T ss_dssp             CCCCCEEEECC------CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE
T ss_pred             cCceEEEEEcC------CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec
Confidence             7799999999      76  799999999999999998744321                                   


Q ss_pred             ----eccCCCCCCccceeecccceeEEEeeeeeec----cCe-eeeeec-------cccCccccEEEEEeecCCCCC-cE
Q 025649          120 ----RSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGK-RLHLDY-------SVGGHTAAASCVAFSMFGERG-KY  182 (250)
Q Consensus       120 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~-------~~~~h~~~v~~~~~~p~~~~~-~~  182 (250)
                          .....+...+.+++|+|+++++++ + .|..    +.. ..+.+.       .+.+|...|.+++|+   |++ ++
T Consensus       167 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~  241 (447)
T 3dw8_B          167 SPRRIFANAHTYHINSISINSDYETYLS-A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH---PNSCNT  241 (447)
T ss_dssp             EEEEEECSCCSSCCCEEEECTTSSEEEE-E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC---SSCTTE
T ss_pred             cceEEeccCCCcceEEEEEcCCCCEEEE-e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC---CCCCcE
Confidence                222345678999999999999985 3 2332    222 222222       467899999999999   887 99


Q ss_pred             EEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC------------ceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          183 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK------------KVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       183 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      |++|+.||.|++||++++....     .....+..|..            .|.+++|+| ++++|++++. +.|++||++
T Consensus       242 l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~  314 (447)
T 3dw8_B          242 FVYSSSKGTIRLCDMRASALCD-----RHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLN  314 (447)
T ss_dssp             EEEEETTSCEEEEETTTCSSSC-----TTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETT
T ss_pred             EEEEeCCCeEEEEECcCCcccc-----ceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCC
Confidence            9999999999999999874310     11345555554            899999998 8999999998 999999974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.1e-30  Score=216.29  Aligned_cols=194  Identities=10%  Similarity=-0.001  Sum_probs=156.0

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      +|.+.|++++|+|+++ +||+|+.||+|++||..+.+....+.              +...|.+++|+|       +++|
T Consensus        15 gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~~~~--------------~~~~V~~l~fsp-------g~~L   72 (902)
T 2oaj_A           15 GMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVIKLE--------------DRSAIKEMRFVK-------GIYL   72 (902)
T ss_dssp             ECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEEECS--------------SCCCEEEEEEET-------TTEE
T ss_pred             CCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEEEcC--------------CCCCEEEEEEcC-------CCEE
Confidence            8999999999999999 99999999999999987765544332              467899999996       5699


Q ss_pred             EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCeeee-ee-------ccccCc
Q 025649           99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKRLH-LD-------YSVGGH  164 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~-------~~~~~h  164 (250)
                      ++++.|++|++||+++++....+..  ...+.+++|+|+++++++      +..|+........ .+       ..+.+|
T Consensus        73 ~S~s~D~~v~lWd~~~~~~~~~~~~--~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h  150 (902)
T 2oaj_A           73 VVINAKDTVYVLSLYSQKVLTTVFV--PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR  150 (902)
T ss_dssp             EEEETTCEEEEEETTTCSEEEEEEC--SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred             EEEECcCeEEEEECCCCcEEEEEcC--CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC
Confidence            9999999999999999887766653  368999999999999984      2234433222110 01       345789


Q ss_pred             cccEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCCcceecccccceeeeee------------------ccCCceeEE
Q 025649          165 TAAASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI------------------NLNKKVNWL  225 (250)
Q Consensus       165 ~~~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------------------~~~~~v~~~  225 (250)
                      .+.|.+++|+   |+ +..+++|+.||.| +||++++...         ..+.                  .|...|+++
T Consensus       151 ~~~V~sl~~s---p~~~~~l~~g~~dg~v-lWd~~~~~~~---------~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v  217 (902)
T 2oaj_A          151 LSPIVSIQWN---PRDIGTVLISYEYVTL-TYSLVENEIK---------QSFIYELPPFAPGGDFSEKTNEKRTPKVIQS  217 (902)
T ss_dssp             CCCCCEEEEE---TTEEEEEEEECSSCEE-EEETTTTEEE---------EEECCCBCTTCCCSTTCCCTTSCBCCCEEEE
T ss_pred             CCCeEEEEEc---cCCCCEEEEEeCCCcE-EEECCCCceE---------EEEecccCCcCCCcccccccccccCCCeEEE
Confidence            9999999999   64 5789999999999 9999997433         2332                  345789999


Q ss_pred             EecCCCCCeEEEeeCCceEEEEeCC
Q 025649          226 CTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       226 ~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +|+| +|++|++|+.||.|++||++
T Consensus       218 ~fsp-dg~~lasgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          218 LYHP-NSLHIITIHEDNSLVFWDAN  241 (902)
T ss_dssp             EECT-TSSEEEEEETTCCEEEEETT
T ss_pred             EEcC-CCCEEEEEECCCeEEEEECC
Confidence            9998 89999999999999999973

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=4.4e-29  Score=197.09  Aligned_cols=221  Identities=17%  Similarity=0.184  Sum_probs=167.9

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcC--CCCeEEEEecCCCeEEEEEccCCCCccceecCCCC--------CCC-
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIP--WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE--------NNG-   69 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~--~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--------~~~-   69 (250)
                      +|++||+++++.+..+. +|.+.|.+++|++  ++. +|++|+.||+|++||+++++...........        ... 
T Consensus       184 ~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (464)
T 3v7d_B          184 TVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY  261 (464)
T ss_dssp             CEEEEETTTTEEEEEEC-CCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTT
T ss_pred             CEEEEECCCCcEEEEEC-CCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeE
Confidence            58999999999999999 9999999999984  666 8999999999999999887654332111000        000 


Q ss_pred             -CCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee
Q 025649           70 -NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD  148 (250)
Q Consensus        70 -~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (250)
                       ......|...+.++  ++      +++++++++.|+.|++||+++++....+..+ ...+.+++|+|+++++++ +..|
T Consensus       262 ~~~~~~~~~~~v~~~--~~------~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s-g~~d  331 (464)
T 3v7d_B          262 FVGVLRGHMASVRTV--SG------HGNIVVSGSYDNTLIVWDVAQMKCLYILSGH-TDRIYSTIYDHERKRCIS-ASMD  331 (464)
T ss_dssp             EEEEECCCSSCEEEE--EE------ETTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEETTTTEEEE-EETT
T ss_pred             EEEEccCccceEEEE--cC------CCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCCEEEEEEcCCCCEEEE-EeCC
Confidence             00112245556655  34      7899999999999999999998887776554 478999999999999984 3332


Q ss_pred             ----eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeE
Q 025649          149 ----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW  224 (250)
Q Consensus       149 ----~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (250)
                          .++....+++..+.+|...|.++.|+   +  +++++++.||.|++||+++..         .. ....|...+..
T Consensus       332 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~--~~l~s~s~dg~v~vwd~~~~~---------~~-~~~~~~~~~~~  396 (464)
T 3v7d_B          332 TTIRIWDLENGELMYTLQGHTALVGLLRLS---D--KFLVSAAADGSIRGWDANDYS---------RK-FSYHHTNLSAI  396 (464)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEC---S--SEEEEEETTSEEEEEETTTCC---------EE-EEEECTTCCCE
T ss_pred             CcEEEEECCCCcEEEEEeCCCCcEEEEEEc---C--CEEEEEeCCCcEEEEECCCCc---------ee-eeecCCCCccE
Confidence                23334456677889999999999987   3  799999999999999999863         21 22346667777


Q ss_pred             EEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          225 LCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       225 ~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +++++ +++++++|+ ||.|++||++
T Consensus       397 ~~~~~-~~~~l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          397 TTFYV-SDNILVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             EEEEE-CSSEEEEEE-TTEEEEEETT
T ss_pred             EEEEe-CCCEEEEec-CCeEEEEECC
Confidence            88887 888899888 9999999974

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.9e-29  Score=196.77  Aligned_cols=205  Identities=16%  Similarity=0.105  Sum_probs=153.0

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc--CCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFS--KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      .+.|.+++|+|+++.++++|+.||.|++||+.  +++.+..+...           .++..|.+++|+|      ++++|
T Consensus       102 ~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----------~~~~~v~~~~~sp------~~~~l  164 (450)
T 2vdu_B          102 YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF-----------CFSKRPNAISIAE------DDTTV  164 (450)
T ss_dssp             CCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE-----------ECSSCEEEEEECT------TSSEE
T ss_pred             CCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc-----------cCCCCceEEEEcC------CCCEE
Confidence            33799999999999334999999999999998  78877776521           1467899999999      99999


Q ss_pred             EEEeCCCeEEEEeCCCceeEe----eccCCCCCCccceeeccc---ceeEEEeeeeee----ccCeeeeeecc-ccCccc
Q 025649           99 VVAKGDGVVDVINIESELNIS----RSKSTTKPLKGSQSTSKV---NIRDAEMEILDQ----SGGKRLHLDYS-VGGHTA  166 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~-~~~h~~  166 (250)
                      ++++.+|.|++|++.++....    .+. .+...+.+++|+|+   ++++++ +..|.    ++....+.+.. +.+|..
T Consensus       165 ~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          165 IIADKFGDVYSIDINSIPEEKFTQEPIL-GHVSMLTDVHLIKDSDGHQFIIT-SDRDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             EEEETTSEEEEEETTSCCCSSCCCCCSE-ECSSCEEEEEEEECTTSCEEEEE-EETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             EEEeCCCcEEEEecCCcccccccceeee-cccCceEEEEEcCCCCCCcEEEE-EcCCCcEEEEECCCCceeeeeecCCCC
Confidence            999999999999998866442    222 23478999999999   888884 32222    12222233344 568999


Q ss_pred             cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccccee----------------eeeeccCCceeEEEecCC
Q 025649          167 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL----------------IKNINLNKKVNWLCTTPT  230 (250)
Q Consensus       167 ~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~  230 (250)
                      .|.+++|+    ++++|++++.|+.|++||++++............                .........|..++|+| 
T Consensus       243 ~v~~~~~s----d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-  317 (450)
T 2vdu_B          243 FVSSICCG----KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-  317 (450)
T ss_dssp             CEEEEEEC----STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-
T ss_pred             ceEEEEEC----CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-
Confidence            99999997    6899999999999999999998544221100000                00002345688999998 


Q ss_pred             CCCeEEEee-CCceEEEEeC
Q 025649          231 ESENLVVCD-TSKVVKVYSI  249 (250)
Q Consensus       231 ~~~~l~s~~-~d~~i~vw~~  249 (250)
                      ++++|++++ .|+.|++|++
T Consensus       318 ~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          318 NLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             SSSEEEEEETTCSEEEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEe
Confidence            888999888 8999999997

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=3e-29  Score=190.31  Aligned_cols=208  Identities=11%  Similarity=0.093  Sum_probs=158.6

Q ss_pred             eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC----ccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649           14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP----NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD   89 (250)
Q Consensus        14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (250)
                      ..+. +|.+.|++++|+|+++ +|++|+.||.|++||+.++..    ...+. +            |...|.+++|+|  
T Consensus         5 ~~~~-gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~------------~~~~v~~~~~~~--   67 (351)
T 3f3f_A            5 PFDS-GHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWR-A------------HDSSIVAIDWAS--   67 (351)
T ss_dssp             CEEC-CCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEE-C------------CSSCEEEEEECC--
T ss_pred             ccCc-ccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceecceec-c------------CCCcEEEEEEcC--
Confidence            3456 9999999999999999 899999999999999987643    22333 2            678999999998  


Q ss_pred             ccCC-CCCEEEEEeCCCeEEEEeCCCce---------eEeeccCCCCCCccceeeccc--ceeEEE------eeeeeecc
Q 025649           90 MLDK-TNKICVVAKGDGVVDVINIESEL---------NISRSKSTTKPLKGSQSTSKV--NIRDAE------MEILDQSG  151 (250)
Q Consensus        90 ~~~~-~~~~l~~~~~d~~i~~~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~  151 (250)
                         . ++++|++++.||.|++||++.+.         ...... .+...+.+++|+|+  +.++++      +..|+...
T Consensus        68 ---~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  143 (351)
T 3f3f_A           68 ---PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE  143 (351)
T ss_dssp             ---GGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred             ---CCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec-ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence               2 48999999999999999998863         233333 34578999999999  888884      22344332


Q ss_pred             Ceeee------ee----ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCc
Q 025649          152 GKRLH------LD----YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK  221 (250)
Q Consensus       152 ~~~~~------~~----~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  221 (250)
                      .....      ..    ....+|...+.+++|+|...++.++++++.|+.+.+|+...+..       ..+..+.+|...
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~h~~~  216 (351)
T 3f3f_A          144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL-------HVAAKLPGHKSL  216 (351)
T ss_dssp             TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE-------EEEEECCCCCSC
T ss_pred             hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce-------eeeeecCCCCcc
Confidence            21110      00    11126788999999993211389999999999998888777532       235667789999


Q ss_pred             eeEEEecCCCC----CeEEEeeCCceEEEEeCC
Q 025649          222 VNWLCTTPTES----ENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       222 v~~~~~~~~~~----~~l~s~~~d~~i~vw~~~  250 (250)
                      |.+++|+| ++    ++|++|+.||.|++||++
T Consensus       217 i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~  248 (351)
T 3f3f_A          217 IRSISWAP-SIGRWYQLIATGCKDGRIRIFKIT  248 (351)
T ss_dssp             EEEEEECC-CSSCSSEEEEEEETTSCEEEEEEE
T ss_pred             eeEEEECC-CCCCcceEEEEEcCCCeEEEEeCC
Confidence            99999998 65    789999999999999963

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2.7e-29  Score=196.53  Aligned_cols=202  Identities=15%  Similarity=0.210  Sum_probs=157.3

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC----------CCCccceecCCCCCCCCCCcccCCCceeEEecCCC
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK----------GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA   88 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   88 (250)
                      +|.+.|++++|+|++..+|++++.||.|++||+.+          .+.+..+.             .|...+.+++|+| 
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-------------~h~~~v~~l~~~~-  191 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-------------GHQKEGYGLSWNP-  191 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-------------CCSSCCCCEEECT-
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-------------CCCCCeEEEEeCC-
Confidence            79999999999998544899999999999999986          33333333             2678899999998 


Q ss_pred             cccCCCCC-EEEEEeCCCeEEEEeCCCceeE------eeccCCCCCCccceeecc-cceeEEE------eeeeeeccCee
Q 025649           89 DMLDKTNK-ICVVAKGDGVVDVINIESELNI------SRSKSTTKPLKGSQSTSK-VNIRDAE------MEILDQSGGKR  154 (250)
Q Consensus        89 ~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~  154 (250)
                           ++. +|++|+.||.|++||+..+...      ......+...+.+++|+| ++..+++      +..|+......
T Consensus       192 -----~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~  266 (430)
T 2xyi_A          192 -----NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT  266 (430)
T ss_dssp             -----TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred             -----CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence                 777 9999999999999999873221      122224457899999999 4556653      22344443332


Q ss_pred             eeeeccccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC
Q 025649          155 LHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE  233 (250)
Q Consensus       155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  233 (250)
                      .+.+..+..|...|.+++|+   |+++ ++++|+.||.|++||++...        ..+..+..|...|.+++|+|.+..
T Consensus       267 ~~~~~~~~~~~~~v~~i~~~---p~~~~~l~tg~~dg~v~vwd~~~~~--------~~~~~~~~h~~~v~~i~~sp~~~~  335 (430)
T 2xyi_A          267 SKPSHTVDAHTAEVNCLSFN---PYSEFILATGSADKTVALWDLRNLK--------LKLHSFESHKDEIFQVQWSPHNET  335 (430)
T ss_dssp             SSCSEEEECCSSCEEEEEEC---SSCTTEEEEEETTSEEEEEETTCTT--------SCSEEEECCSSCEEEEEECSSCTT
T ss_pred             CcceeEeecCCCCeEEEEeC---CCCCCEEEEEeCCCeEEEEeCCCCC--------CCeEEeecCCCCEEEEEECCCCCC
Confidence            34556677899999999999   7776 78999999999999999842        455677789999999999984445


Q ss_pred             eEEEeeCCceEEEEeCC
Q 025649          234 NLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       234 ~l~s~~~d~~i~vw~~~  250 (250)
                      +|++++.|+.|++||++
T Consensus       336 ~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          336 ILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             EEEEEETTSCCEEEEGG
T ss_pred             EEEEEeCCCcEEEEeCC
Confidence            79999999999999973

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=2.7e-29  Score=192.18  Aligned_cols=210  Identities=11%  Similarity=0.045  Sum_probs=155.4

Q ss_pred             EEcccceeeeeeccCCCCCeeeEEEcCC---CCeEEEEecCCCeEEEEEccC-CCCc-cceecCCCCCCCCCCcccCCCc
Q 025649            5 IDIRQHCLYKSLRAGHSSICSSVQFIPW---KPWEVISGGLDSKLVMWDFSK-GRPN-KIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         5 wd~~~~~~~~~l~~~h~~~v~~l~~~~~---~~~~l~s~s~dg~v~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      |+....+.+..++ +|.+.|++++|+|+   ++ +|++|+.||.|++||+.+ ++.+ ..+. +            |...
T Consensus        24 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~------------h~~~   88 (368)
T 3mmy_A           24 DNHNPMKDIEVTS-SPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPKAQQ-M------------HTGP   88 (368)
T ss_dssp             CSSCTTCCEECSS-CCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEEEEE-E------------CSSC
T ss_pred             CCCCCcceeEecc-CCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEEEec-c------------ccCC
Confidence            3444566777888 99999999999999   46 899999999999999987 4444 3333 3            5789


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceee--cccceeEEEe------eeeeecc
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST--SKVNIRDAEM------EILDQSG  151 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~  151 (250)
                      |.+++|+|      ++++|++++.||.|++||+++++......  +...+.++.|  +|++.++++.      ..|+...
T Consensus        89 v~~~~~~~------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  160 (368)
T 3mmy_A           89 VLDVCWSD------DGSKVFTASCDKTAKMWDLSSNQAIQIAQ--HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS  160 (368)
T ss_dssp             EEEEEECT------TSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred             EEEEEECc------CCCEEEEEcCCCcEEEEEcCCCCceeecc--ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence            99999999      99999999999999999999988766433  4478999999  8999988842      2233322


Q ss_pred             CeeeeeeccccC-----------------------------------------ccccEEEEEeecCCCCCc----EEEEe
Q 025649          152 GKRLHLDYSVGG-----------------------------------------HTAAASCVAFSMFGERGK----YLISG  186 (250)
Q Consensus       152 ~~~~~~~~~~~~-----------------------------------------h~~~v~~~~~~p~~~~~~----~l~s~  186 (250)
                      .   +.+..+..                                         +...+.++.+.   ++..    .++++
T Consensus       161 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  234 (368)
T 3mmy_A          161 S---NPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF---KDKQNKPTGFALG  234 (368)
T ss_dssp             S---SCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEE---ECTTSCEEEEEEE
T ss_pred             C---cEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEc---ccCCCCCCeEEEe
Confidence            1   11111111                                         22334455554   2322    39999


Q ss_pred             eCCCeEEEEecCCCcceecccccceeeeeeccCC------------ceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          187 GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK------------KVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       187 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +.||.|++||++.....      .....+..|..            .|.+++|+| ++++|++++.||.|++||++
T Consensus       235 ~~dg~i~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~  303 (368)
T 3mmy_A          235 SIEGRVAIHYINPPNPA------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKD  303 (368)
T ss_dssp             ETTSEEEEEESSCSCHH------HHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETT
T ss_pred             cCCCcEEEEecCCCCcc------ccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECC
Confidence            99999999999886331      22234444544            799999998 88999999999999999974

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.9e-30  Score=212.42  Aligned_cols=208  Identities=11%  Similarity=0.110  Sum_probs=160.9

Q ss_pred             eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC--CCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649           13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK--GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM   90 (250)
Q Consensus        13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   90 (250)
                      +..+. +|.+.|++++|+|+++ +|++|+.||+|++||+.+  ++.+..+. +            |...|.+++|+|   
T Consensus         2 ~~~l~-gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~~~l~-~------------h~~~V~~l~~s~---   63 (753)
T 3jro_A            2 VVIAN-AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDTLT-G------------HEGPVWRVDWAH---   63 (753)
T ss_dssp             -------CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEEEEEC-C------------CSSCEEEEEECC---
T ss_pred             eeecc-cCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccceecc-C------------CcCceEEEEecC---
Confidence            34567 9999999999999999 899999999999999984  34444444 2            678999999998   


Q ss_pred             cCCC--CCEEEEEeCCCeEEEEeCCCceeE-eeccCCCCCCccceeeccc--ceeEEEe------eeeeeccCeeeeeec
Q 025649           91 LDKT--NKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSKV--NIRDAEM------EILDQSGGKRLHLDY  159 (250)
Q Consensus        91 ~~~~--~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~  159 (250)
                         +  +++|++|+.||.|++||+.++... ......+...+.+++|+|+  +..+++.      ..|+..... .....
T Consensus        64 ---~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~-~~~~~  139 (753)
T 3jro_A           64 ---PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-TTSPI  139 (753)
T ss_dssp             ---TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS-CCCCE
T ss_pred             ---CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC-Cccee
Confidence               5  899999999999999999987632 2222334578999999999  8888842      223332221 12234


Q ss_pred             cccCccccEEEEEeecCCC-------------CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649          160 SVGGHTAAASCVAFSMFGE-------------RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC  226 (250)
Q Consensus       160 ~~~~h~~~v~~~~~~p~~~-------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (250)
                      .+.+|...|.+++|+   |             +++++++|+.||.|++||++++....     .+...+.+|...|.+++
T Consensus       140 ~~~~~~~~v~~l~~~---p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~-----~~~~~~~~h~~~V~~l~  211 (753)
T 3jro_A          140 IIDAHAIGVNSASWA---PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-----VLESTLEGHSDWVRDVA  211 (753)
T ss_dssp             EEECCSSCEEEEEEC---CCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE-----EEEEEECCCSSCEEEEE
T ss_pred             EeecCCCceEEEEec---CcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc-----eeeeeecCCCCcEEEEE
Confidence            567899999999999   5             58999999999999999998864321     34456778999999999


Q ss_pred             ecCCC--CCeEEEeeCCceEEEEeCC
Q 025649          227 TTPTE--SENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       227 ~~~~~--~~~l~s~~~d~~i~vw~~~  250 (250)
                      |+|.+  +.+|++|+.||.|++||++
T Consensus       212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          212 WSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             ECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             eccCCCCCCEEEEEecCCEEEEecCC
Confidence            99833  8899999999999999963

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=9e-30  Score=222.20  Aligned_cols=219  Identities=19%  Similarity=0.229  Sum_probs=177.1

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+.+++....+. +|...|.+++|+|+++ +|++++.||.|++||+.+++......              +...+
T Consensus       984 ~i~i~d~~~~~~~~~~~-~h~~~v~~l~~s~dg~-~l~s~~~dg~i~vwd~~~~~~~~~~~--------------~~~~v 1047 (1249)
T 3sfz_A          984 AIKIIELPNNRVFSSGV-GHKKAVRHIQFTADGK-TLISSSEDSVIQVWNWQTGDYVFLQA--------------HQETV 1047 (1249)
T ss_dssp             CCEEEETTTTSCEEECC-CCSSCCCCEEECSSSS-CEEEECSSSBEEEEETTTTEEECCBC--------------CSSCE
T ss_pred             CEEEEEcCCCceeeecc-cCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCceEEEec--------------CCCcE
Confidence            47899999999999999 9999999999999999 89999999999999999887654332              57889


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLH  156 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  156 (250)
                      .++.++|      + ..+++++.|+.|++||+.+++....+..+ ...+.+++|+|+++.+++ +..+.    ++....+
T Consensus      1048 ~~~~~~~------~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~s-~s~d~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A         1048 KDFRLLQ------D-SRLLSWSFDGTVKVWNVITGRIERDFTCH-QGTVLSCAISSDATKFSS-TSADKTAKIWSFDLLS 1118 (1249)
T ss_dssp             EEEEECS------S-SEEEEEESSSEEEEEETTTTCCCEEEECC-SSCCCCEEECSSSSSCEE-ECCSSCCCEECSSSSS
T ss_pred             EEEEEcC------C-CcEEEEECCCcEEEEECCCCceeEEEccc-CCcEEEEEECCCCCEEEE-EcCCCcEEEEECCCcc
Confidence            9999997      4 46788999999999999998877666544 477999999999999984 33333    3334455


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      ++..+.+|...|++++|+   |+|++|++|+.||.|++||+.++.................|...|.+++|+| ++++++
T Consensus      1119 ~~~~l~~h~~~v~~~~~s---~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~ 1194 (1249)
T 3sfz_A         1119 PLHELKGHNGCVRCSAFS---LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP-DSKTLV 1194 (1249)
T ss_dssp             CSBCCCCCSSCEEEEEEC---SSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECT-TSSCEE
T ss_pred             eeeeeccCCCcEEEEEEC---CCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECC-CCCEEE
Confidence            677888999999999999   8999999999999999999999854432211122223367899999999998 899998


Q ss_pred             EeeCCceEEEEeCC
Q 025649          237 VCDTSKVVKVYSIS  250 (250)
Q Consensus       237 s~~~d~~i~vw~~~  250 (250)
                      +++  |.|++||+.
T Consensus      1195 s~~--g~v~vwd~~ 1206 (1249)
T 3sfz_A         1195 SAG--GYLKWWNVA 1206 (1249)
T ss_dssp             EES--SSEEEBCSS
T ss_pred             ECC--CeEEEEECC
Confidence            886  899999963

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=5e-29  Score=209.13  Aligned_cols=216  Identities=16%  Similarity=0.172  Sum_probs=177.6

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +|++||+.+++.+..+. +|.+.|.+++|+|+++ +|++++.||.|++||++++ .....+. +            |...
T Consensus        78 ~i~vw~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~-~------------~~~~  142 (814)
T 3mkq_A           78 RIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFE-G------------HEHF  142 (814)
T ss_dssp             EEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEE-C------------CSSC
T ss_pred             eEEEEECCCCcEEEEEe-cCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEc-C------------CCCc
Confidence            47999999999999999 9999999999999999 8999999999999999887 3344443 3            5778


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecc--cceeEEEee---eeeeccCee
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK--VNIRDAEME---ILDQSGGKR  154 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~  154 (250)
                      |.+++|+|     .+++.+++++.||.|++||+.++.............+..++|+|  ++.++++.+   ....++...
T Consensus       143 v~~~~~~p-----~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  217 (814)
T 3mkq_A          143 VMCVAFNP-----KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (814)
T ss_dssp             EEEEEEET-----TEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred             EEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            99999997     46789999999999999999988777776666668899999999  888888421   222233334


Q ss_pred             eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC-
Q 025649          155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-  233 (250)
Q Consensus       155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-  233 (250)
                      .+.+..+.+|...|.+++|+   |+++++++++.||.|++||+.++         ........|...+.+++|+| ++. 
T Consensus       218 ~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~-~~~~  284 (814)
T 3mkq_A          218 KSCVATLEGHMSNVSFAVFH---PTLPIIISGSEDGTLKIWNSSTY---------KVEKTLNVGLERSWCIATHP-TGRK  284 (814)
T ss_dssp             TEEEEEEECCSSCEEEEEEC---SSSSEEEEEETTSCEEEEETTTC---------SEEEEECCSSSSEEEEEECT-TCGG
T ss_pred             CcEEEEEcCCCCCEEEEEEc---CCCCEEEEEeCCCeEEEEECCCC---------cEEEEeecCCCcEEEEEEcc-CCCc
Confidence            45566788899999999999   89999999999999999999987         56667788889999999998 554 


Q ss_pred             eEEEeeCCceEEEEeC
Q 025649          234 NLVVCDTSKVVKVYSI  249 (250)
Q Consensus       234 ~l~s~~~d~~i~vw~~  249 (250)
                      .+++++.++.+.+|++
T Consensus       285 ~~~~~~~~~~~~~~~~  300 (814)
T 3mkq_A          285 NYIASGFDNGFTVLSL  300 (814)
T ss_dssp             GEEEEEETTEEEEEEC
T ss_pred             eEEEEEeCCCEEEEEc
Confidence            3344455677888875

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-29  Score=198.14  Aligned_cols=212  Identities=10%  Similarity=0.002  Sum_probs=154.8

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      ++.|++.+++....+..+|...|.+++|||+|+ +||+++.||+|++||.+.  ++..+. +.        .......++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~-~~--------~~~~~~sv~  133 (588)
T 2j04_A           66 ENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLD-SK--------GNLSSRTYH  133 (588)
T ss_dssp             CCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECC-CS--------SCSTTTCEE
T ss_pred             cceEEEEeCCCceEeecCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeecc-CC--------CccccccEE
Confidence            345666655543333324688999999999999 899999999999999644  333333 20        000123699


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee-------Eeecc---CCCCCCccceeecccceeEEE-----eee
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN-------ISRSK---STTKPLKGSQSTSKVNIRDAE-----MEI  146 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~  146 (250)
                      +++|+|      +|++|++|+.||+|++||+.++..       ...+.   ..+...+.+++|+|+| .++.     +..
T Consensus       134 svafSP------DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrl  206 (588)
T 2j04_A          134 CFEWNP------IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFS  206 (588)
T ss_dssp             EEEECS------SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEE
T ss_pred             EEEEcC------CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEE
Confidence            999999      999999999999999999998753       33332   3345799999999999 4332     223


Q ss_pred             eeeccCeeeeeeccc-cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649          147 LDQSGGKRLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL  225 (250)
Q Consensus       147 ~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (250)
                      |+.......+...++ .+|...|.+++|+     |+.+++++ ++.|++||+.++         .......+|...+..+
T Consensus       207 Wd~~~~~~~~~~~tL~~~h~~~V~svaFs-----g~~LASa~-~~tIkLWd~~~~---------~~~~~~~gh~~~V~~v  271 (588)
T 2j04_A          207 MTVSASSHQPVSRMIQNASRRKITDLKIV-----DYKVVLTC-PGYVHKIDLKNY---------SISSLKTGSLENFHII  271 (588)
T ss_dssp             ECCCSSSSCCCEEEEECCCSSCCCCEEEE-----TTEEEEEC-SSEEEEEETTTT---------EEEEEECSCCSCCCEE
T ss_pred             EECCCCccccceeeecccccCcEEEEEEE-----CCEEEEEe-CCeEEEEECCCC---------eEEEEEcCCCceEEEE
Confidence            333222211122345 4788899999997     47889887 699999999986         3423344899999999


Q ss_pred             Ee--cCCCCCeEEEeeCCceEEEEeC
Q 025649          226 CT--TPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       226 ~~--~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ++  +| +++.+++++.||+ ++|.+
T Consensus       272 a~~~s~-d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          272 PLNHEK-ESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             EETTCS-SCEEEEECSSCEE-EEEES
T ss_pred             EeeeCC-CCCEEEEEcCCCC-EEEee
Confidence            99  87 8889999999999 99986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=6.2e-29  Score=194.78  Aligned_cols=214  Identities=17%  Similarity=0.198  Sum_probs=167.4

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccc--eecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI--VNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|++||+.+++.+..+. +|...|.+++|+++   +|++|+.||.|++||+++++....  ...+            |..
T Consensus       194 ~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------------~~~  257 (435)
T 1p22_A          194 TVRVWDVNTGEMLNTLI-HHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVG------------HRA  257 (435)
T ss_dssp             CEEEEESSSCCEEEEEC-CCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECC------------CSS
T ss_pred             eEEEEECCCCcEEEEEc-CCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecC------------CCC
Confidence            58999999999999999 99999999999753   899999999999999998776532  1112            567


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKR  154 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  154 (250)
                      .|.++++        +++++++|+.||.|++||+++++....+..+ ...+.++.+  ++.++++ +..+    .++...
T Consensus       258 ~v~~~~~--------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~~-g~~dg~i~iwd~~~  325 (435)
T 1p22_A          258 AVNVVDF--------DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQY--RDRLVVS-GSSDNTIRLWDIEC  325 (435)
T ss_dssp             CEEEEEE--------ETTEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEE--ETTEEEE-EETTSCEEEEETTT
T ss_pred             cEEEEEe--------CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC-CCcEEEEEe--CCCEEEE-EeCCCeEEEEECCC
Confidence            8888887        4789999999999999999998887776654 366777877  4566663 3322    233344


Q ss_pred             eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649          155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  234 (250)
                      .+++..+.+|...|.+++|.     +++|++|+.||.|++||++++...........+..+.+|...|.+++|   ++.+
T Consensus       326 ~~~~~~~~~h~~~v~~~~~~-----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~  397 (435)
T 1p22_A          326 GACLRVLEGHEELVRCIRFD-----NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQ  397 (435)
T ss_dssp             CCEEEEECCCSSCEEEEECC-----SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE---CSSC
T ss_pred             CCEEEEEeCCcCcEEEEEec-----CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe---CCCE
Confidence            55677888999999999874     579999999999999999876322111111256677899999999998   5678


Q ss_pred             EEEeeCCceEEEEeCC
Q 025649          235 LVVCDTSKVVKVYSIS  250 (250)
Q Consensus       235 l~s~~~d~~i~vw~~~  250 (250)
                      |++|+.||.|++||+.
T Consensus       398 l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          398 IVSSSHDDTILIWDFL  413 (435)
T ss_dssp             EEECCSSSEEEEEC--
T ss_pred             EEEEeCCCEEEEEECC
Confidence            9999999999999973

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=4.6e-29  Score=203.14  Aligned_cols=226  Identities=12%  Similarity=0.071  Sum_probs=159.1

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCC---------------------------------CCeEEEEecCCCeEE
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPW---------------------------------KPWEVISGGLDSKLV   47 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~---------------------------------~~~~l~s~s~dg~v~   47 (250)
                      +|++||+.+++.+..+. +|...|.+++| |+                                 +. .|++++.|+.|+
T Consensus       320 ~i~~~d~~~~~~~~~~~-~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~  396 (615)
T 1pgu_A          320 TLNFYELGHDEVLKTIS-GHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLK  396 (615)
T ss_dssp             CEEEEETTEEEEEEEEC-CCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETTTEEE
T ss_pred             CEEEEECCCCcEEEEEe-CCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCc-EEEEEeCCCCEE
Confidence            47889998888888887 77777777776 54                                 44 456666666666


Q ss_pred             EEEccCCCCcc---ceecCCCC-----------------CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC-CCe
Q 025649           48 MWDFSKGRPNK---IVNFGLPE-----------------NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGV  106 (250)
Q Consensus        48 iwd~~~~~~~~---~~~~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-d~~  106 (250)
                      +||+.+++...   .+......                 .........+...+.+++++        ++++++++. |+.
T Consensus       397 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~d~~  468 (615)
T 1pgu_A          397 VNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--------QNYVAVGLEEGNT  468 (615)
T ss_dssp             ETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--------SSEEEEEETTTSC
T ss_pred             EEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--------CCEEEEeecCCCe
Confidence            66654332100   00000000                 00000000133445555554        678999999 999


Q ss_pred             EEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeeeccccC-ccccEEEEEeecCCC----
Q 025649          107 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGE----  178 (250)
Q Consensus       107 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~----  178 (250)
                      |++||+.+++........+...+.+++|+|+++++++.+   ....++....+.+..+.+ |...|++++|+   |    
T Consensus       469 i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~s---p~~~~  545 (615)
T 1pgu_A          469 IQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK---PAEKG  545 (615)
T ss_dssp             EEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC---CCC--
T ss_pred             EEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEc---Ccccc
Confidence            999999987665333334457899999999999999421   122233444555667777 99999999999   8    


Q ss_pred             ------CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          179 ------RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       179 ------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                            ++++|++++.||.|++||+.++.        .++..+.+|...|.+++|+| +++ |++++.||.|++|+++
T Consensus       546 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          546 ANEEEIEEDLVATGSLDTNIFIYSVKRPM--------KIIKALNAHKDGVNNLLWET-PST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             ----CCSCCEEEEEETTSCEEEEESSCTT--------CCEEETTSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEEEC
T ss_pred             ccccccCCCEEEEEcCCCcEEEEECCCCc--------eechhhhcCccceEEEEEcC-CCC-eEEecCCceEEEEeee
Confidence                  99999999999999999999863        34556788999999999998 888 9999999999999974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-28  Score=206.60  Aligned_cols=214  Identities=10%  Similarity=0.036  Sum_probs=160.5

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|+|||..+.+....+.  |..+|.+++|+| ++ +|++++.|++|++||+++++.+..+.              +...|
T Consensus        40 ~I~lw~~~~~~~~~~~~--~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~~~--------------~~~~V  101 (902)
T 2oaj_A           40 EVHIYGQQQVEVVIKLE--DRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTTVF--------------VPGKI  101 (902)
T ss_dssp             EEEEECSTTCEEEEECS--SCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEEEE--------------CSSCE
T ss_pred             EEEEEeCCCcEEEEEcC--CCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEEEc--------------CCCCE
Confidence            48999998887766654  889999999999 87 89999999999999999998887775              45789


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe----------eccCCCCCCccceeecccc-eeEEEee----
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS----------RSKSTTKPLKGSQSTSKVN-IRDAEME----  145 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~----  145 (250)
                      ++++|+|      ++++|++|+.||.|++||+++++...          .....+...+.+++|+|++ ..+++ +    
T Consensus       102 ~~v~~sp------~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~-g~~dg  174 (902)
T 2oaj_A          102 TSIDTDA------SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI-SYEYV  174 (902)
T ss_dssp             EEEECCT------TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE-ECSSC
T ss_pred             EEEEECC------CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE-EeCCC
Confidence            9999999      99999999999999999999877531          1112345789999999964 55553 2    


Q ss_pred             --eeeeccCeeeeeeccccC------------------ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec
Q 025649          146 --ILDQSGGKRLHLDYSVGG------------------HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT  205 (250)
Q Consensus       146 --~~~~~~~~~~~~~~~~~~------------------h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  205 (250)
                        .||....   +.+..+..                  |...|.+++|+   |+|++|++|+.||.|++||+++++....
T Consensus       175 ~vlWd~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs---pdg~~lasgs~Dg~i~lWd~~~g~~~~~  248 (902)
T 2oaj_A          175 TLTYSLVEN---EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH---PNSLHIITIHEDNSLVFWDANSGHMIMA  248 (902)
T ss_dssp             EEEEETTTT---EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC---TTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             cEEEECCCC---ceEEEEecccCCcCCCcccccccccccCCCeEEEEEc---CCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence              3443332   33333333                  46789999999   8999999999999999999998743321


Q ss_pred             ccccceeeeee-------------ccCCceeEEEecCC---C-CCeEEEeeCC-----ceEEEEeC
Q 025649          206 SINNDLLIKNI-------------NLNKKVNWLCTTPT---E-SENLVVCDTS-----KVVKVYSI  249 (250)
Q Consensus       206 ~~~~~~~~~~~-------------~~~~~v~~~~~~~~---~-~~~l~s~~~d-----~~i~vw~~  249 (250)
                      .    .+....             .|...|++++|++.   + +.++++|+.|     ..+++|++
T Consensus       249 r----~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          249 R----TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             E----CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             E----eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            0    000001             24557999999642   3 3567778765     37888873

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.5e-28  Score=181.55  Aligned_cols=203  Identities=16%  Similarity=0.195  Sum_probs=150.9

Q ss_pred             ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649           10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD   89 (250)
Q Consensus        10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (250)
                      .+....+. +|.+.|.+++| |+++ +|++|+.||.|++||+.+++....+..             |...|.+++|+|  
T Consensus         8 ~~~~~~l~-~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~-------------~~~~v~~~~~~~--   69 (313)
T 3odt_A            8 YQLSATLK-GHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTVVYT-------------GQGFLNSVCYDS--   69 (313)
T ss_dssp             CEEEEEEC-CCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEEEEE-------------CSSCEEEEEEET--
T ss_pred             HHHHHHhh-CCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEEeec-------------CCccEEEEEECC--
Confidence            37788899 99999999999 8898 899999999999999988776666653             467899999998  


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCce---eEeeccCC-------------------------------------CCCCc
Q 025649           90 MLDKTNKICVVAKGDGVVDVINIESEL---NISRSKST-------------------------------------TKPLK  129 (250)
Q Consensus        90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~-------------------------------------~~~~~  129 (250)
                          ++++|++++.|+.|++|++....   .......+                                     +...+
T Consensus        70 ----~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v  145 (313)
T 3odt_A           70 ----EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASV  145 (313)
T ss_dssp             ----TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCE
T ss_pred             ----CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCce
Confidence                88888888888888888876532   11111111                                     12334


Q ss_pred             cceeecc-cceeEEEeeeeeecc--CeeeeeeccccC-ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec
Q 025649          130 GSQSTSK-VNIRDAEMEILDQSG--GKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT  205 (250)
Q Consensus       130 ~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  205 (250)
                      .++.+.| ++..+++ +..+...  ....+....+.. |...+.+++|+   |++. +++++.||.|++||++++     
T Consensus       146 ~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~---~~~~-~~~~~~dg~i~i~d~~~~-----  215 (313)
T 3odt_A          146 WDAKVVSFSENKFLT-ASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVV---DDGH-FISCSNDGLIKLVDMHTG-----  215 (313)
T ss_dssp             EEEEEEETTTTEEEE-EETTSCEEEEETTEEEEEECSSCSSCEEEEEEE---ETTE-EEEEETTSEEEEEETTTC-----
T ss_pred             eEEEEccCCCCEEEE-EECCCCEEEEecCceEEEEeccCcccEEEEEEc---CCCe-EEEccCCCeEEEEECCch-----
Confidence            4444444 4444442 1111110  001223344555 88899999999   7877 999999999999999987     


Q ss_pred             ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          206 SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                          +.+..+..|...|.+++|+| ++ .|++++.||.|++||++
T Consensus       216 ----~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~  254 (313)
T 3odt_A          216 ----DVLRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKE  254 (313)
T ss_dssp             ----CEEEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTT
T ss_pred             ----hhhhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECC
Confidence                66677788999999999998 66 59999999999999974

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=6.5e-29  Score=190.28  Aligned_cols=223  Identities=9%  Similarity=0.022  Sum_probs=159.1

Q ss_pred             cEEEEccccee----------eeeeccCCCCCeeeEEEcCCCCeEEEE-----------ecCCCeEEEEEccCCCCccce
Q 025649            2 WQIIDIRQHCL----------YKSLRAGHSSICSSVQFIPWKPWEVIS-----------GGLDSKLVMWDFSKGRPNKIV   60 (250)
Q Consensus         2 i~iwd~~~~~~----------~~~l~~~h~~~v~~l~~~~~~~~~l~s-----------~s~dg~v~iwd~~~~~~~~~~   60 (250)
                      |++|++..+..          ...|. +|...|.+++++++   .+++           ++.|+.+++|++.+......+
T Consensus        45 i~~w~~~~~~~~~~~~~~~~~~~~l~-~~~~~v~s~~~~~~---~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~  120 (365)
T 4h5i_A           45 LTVLRVDPTKDTEKEQFHILSEFALE-DNDDSPTAIDASKG---IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEF  120 (365)
T ss_dssp             EEEEEECTTSSSHHHHEEEEEEEECC-TTSCCCCEEEEETT---EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEE
T ss_pred             EEEEEEcCCCcceeeeeeeeeEEEcc-CCCCceEEEEeCCC---EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEE
Confidence            78999875432          12466 88899999887654   4554           456788999998765432221


Q ss_pred             ecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE--eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccc
Q 025649           61 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA--KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN  138 (250)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (250)
                      ....    .......+...+.+++|+|      ||++++++  +.|++|++||+++++....+..  ...+.+++|+|+|
T Consensus       121 ~~~~----~~~~~~~~~~~~~~v~fSp------Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~--~~~V~~v~fspdg  188 (365)
T 4h5i_A          121 LTSV----DFDASTNADDYTKLVYISR------EGTVAAIASSKVPAIMRIIDPSDLTEKFEIET--RGEVKDLHFSTDG  188 (365)
T ss_dssp             EEEE----CSSCCCCTTCCEEEEEECT------TSSCEEEEESCSSCEEEEEETTTTEEEEEEEC--SSCCCEEEECTTS
T ss_pred             eeee----ceeecCCcccCEEEEEEcC------CCCEEEEEECCCCCEEEEeECCCCcEEEEeCC--CCceEEEEEccCC
Confidence            1000    0001111345688999999      99988654  4789999999999988877654  3679999999999


Q ss_pred             eeEEEee-----eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC----eEEEEecCCCcceeccccc
Q 025649          139 IRDAEME-----ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK----LVKVWDCSRFQGVQTSINN  209 (250)
Q Consensus       139 ~~~~~~~-----~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~  209 (250)
                      +++++..     .++..... ........+|...|.+++|+   |+++++++++.|+    .+++||+.......     
T Consensus       189 ~~l~s~s~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~fs---pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~-----  259 (365)
T 4h5i_A          189 KVVAYITGSSLEVISTVTGS-CIARKTDFDKNWSLSKINFI---ADDTVLIAASLKKGKGIVLTKISIKSGNTSV-----  259 (365)
T ss_dssp             SEEEEECSSCEEEEETTTCC-EEEEECCCCTTEEEEEEEEE---ETTEEEEEEEESSSCCEEEEEEEEETTEEEE-----
T ss_pred             ceEEeccceeEEEEEeccCc-ceeeeecCCCCCCEEEEEEc---CCCCEEEEEecCCcceeEEeecccccceecc-----
Confidence            9998532     11111111 11223456788999999999   8999999999887    68889987753221     


Q ss_pred             ceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          210 DLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .....+.+|...|++++|+| ||++|++|+.|+.|+|||++
T Consensus       260 ~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~  299 (365)
T 4h5i_A          260 LRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLK  299 (365)
T ss_dssp             EEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETT
T ss_pred             eeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECC
Confidence            22345678999999999998 99999999999999999974

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=9.5e-29  Score=187.60  Aligned_cols=202  Identities=11%  Similarity=0.093  Sum_probs=162.0

Q ss_pred             CcEEEEc-ccceeeeeeccC--CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC---------CCCccceecCCCCCC
Q 025649            1 MWQIIDI-RQHCLYKSLRAG--HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK---------GRPNKIVNFGLPENN   68 (250)
Q Consensus         1 ti~iwd~-~~~~~~~~l~~~--h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~---------~~~~~~~~~~~~~~~   68 (250)
                      +|++||+ .+++. ..+. +  |...|.+++|+| +. +|++++.|+.|++||+++         ++++..+.       
T Consensus        80 ~i~~wd~~~~~~~-~~~~-~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------  148 (342)
T 1yfq_A           80 EILKVDLIGSPSF-QALT-NNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-------  148 (342)
T ss_dssp             CEEEECSSSSSSE-EECB-SCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-------
T ss_pred             eEEEEEeccCCce-Eecc-ccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEe-------
Confidence            5899999 87765 6777 8  999999999999 77 899999999999999987         66666555       


Q ss_pred             CCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCC-cee-EeeccCCCCCCccceeecc-cceeEEEee
Q 025649           69 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELN-ISRSKSTTKPLKGSQSTSK-VNIRDAEME  145 (250)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  145 (250)
                             +...+.+++|+|      ++  +++++.|+.|++||+++ +.. ...........+.+++|+| +++++++.+
T Consensus       149 -------~~~~v~~~~~~~------~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~  213 (342)
T 1yfq_A          149 -------VKNKIFTMDTNS------SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             -------SCCCEEEEEECS------SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred             -------eCCceEEEEecC------Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe
Confidence                   467899999998      55  99999999999999998 543 2333344557899999999 999888422


Q ss_pred             ------eeeeccC---eeeeeeccccCccc---------cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccc
Q 025649          146 ------ILDQSGG---KRLHLDYSVGGHTA---------AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI  207 (250)
Q Consensus       146 ------~~~~~~~---~~~~~~~~~~~h~~---------~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  207 (250)
                            .|+....   ...+....+.+|..         .|.+++|+   |++++|++++.||.|++||++++       
T Consensus       214 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~dg~i~vwd~~~~-------  283 (342)
T 1yfq_A          214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS---PRHKFLYTAGSDGIISCWNLQTR-------  283 (342)
T ss_dssp             TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC---TTTCCEEEEETTSCEEEEETTTT-------
T ss_pred             cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc---CCCCEEEEecCCceEEEEcCccH-------
Confidence                  2222221   00134455666654         99999999   89999999999999999999987       


Q ss_pred             ccceeeeeecc-CCceeEEEecCCCCCeEEEeeCCce
Q 025649          208 NNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTSKV  243 (250)
Q Consensus       208 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~  243 (250)
                        +.+..+.+| ...|.+++  | ++++|++++.||.
T Consensus       284 --~~~~~~~~~h~~~v~~~~--~-~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          284 --KKIKNFAKFNEDSVVKIA--C-SDNILCLATSDDT  315 (342)
T ss_dssp             --EEEEECCCCSSSEEEEEE--E-CSSEEEEEEECTH
T ss_pred             --hHhhhhhcccCCCceEec--C-CCCeEEEEecCCc
Confidence              566677888 99999998  5 8999999999998

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=3.7e-28  Score=190.93  Aligned_cols=204  Identities=19%  Similarity=0.216  Sum_probs=169.2

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+.+++.+..+. +|...|.+++|+  +. +|++|+.||+|++||+.+++.+..+. +            |...|
T Consensus       140 ~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~-~------------h~~~v  202 (445)
T 2ovr_B          140 TLKVWSAVTGKCLRTLV-GHTGGVWSSQMR--DN-IIISGSTDRTLKVWNAETGECIHTLY-G------------HTSTV  202 (445)
T ss_dssp             CEEEEETTTCCEEEECC-CCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEEC-C------------CSSCE
T ss_pred             cEEEEECCCCcEEEEEc-CCCCCEEEEEec--CC-EEEEEeCCCeEEEEECCcCcEEEEEC-C------------CCCcE
Confidence            58999999999999999 999999999998  44 89999999999999999998877776 3            56789


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLH  156 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  156 (250)
                      .++.++        ++.+++|+.||.|++||+++++....+..+ ...+.++.+  ++.++++ +..+    .++....+
T Consensus       203 ~~~~~~--------~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~~-~~~dg~i~iwd~~~~~  270 (445)
T 2ovr_B          203 RCMHLH--------EKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAAVRCVQY--DGRRVVS-GAYDFMVKVWDPETET  270 (445)
T ss_dssp             EEEEEE--------TTEEEEEETTSEEEEEESSSCCEEEEEECC-SSCEEEEEE--CSSCEEE-EETTSCEEEEEGGGTE
T ss_pred             EEEEec--------CCEEEEEeCCCEEEEEECCCCcEEEEEcCC-cccEEEEEE--CCCEEEE-EcCCCEEEEEECCCCc
Confidence            998885        467999999999999999998877766544 467888888  6777773 3322    22334455


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      .+..+.+|...|.++.|.     +.++++|+.||.|++||++++         +.+..+.+|...+.++.+.   +++++
T Consensus       271 ~~~~~~~~~~~v~~~~~~-----~~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~~---~~~l~  333 (445)
T 2ovr_B          271 CLHTLQGHTNRVYSLQFD-----GIHVVSGSLDTSIRVWDVETG---------NCIHTLTGHQSLTSGMELK---DNILV  333 (445)
T ss_dssp             EEEEECCCSSCEEEEEEC-----SSEEEEEETTSCEEEEETTTC---------CEEEEECCCCSCEEEEEEE---TTEEE
T ss_pred             EeEEecCCCCceEEEEEC-----CCEEEEEeCCCeEEEEECCCC---------CEEEEEcCCcccEEEEEEe---CCEEE
Confidence            667888999999999874     689999999999999999997         5666778899999888774   55899


Q ss_pred             EeeCCceEEEEeCC
Q 025649          237 VCDTSKVVKVYSIS  250 (250)
Q Consensus       237 s~~~d~~i~vw~~~  250 (250)
                      +|+.||.|++||++
T Consensus       334 ~~~~dg~i~vwd~~  347 (445)
T 2ovr_B          334 SGNADSTVKIWDIK  347 (445)
T ss_dssp             EEETTSCEEEEETT
T ss_pred             EEeCCCeEEEEECC
Confidence            99999999999973

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=1e-27  Score=188.39  Aligned_cols=204  Identities=20%  Similarity=0.225  Sum_probs=167.1

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+++++.+..+. +|...|.+++|++  . .|++|+.||+|++||+++++.+..+..             |...+
T Consensus       180 ~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~--~-~l~s~s~dg~i~~wd~~~~~~~~~~~~-------------~~~~v  242 (445)
T 2ovr_B          180 TLKVWNAETGECIHTLY-GHTSTVRCMHLHE--K-RVVSGSRDATLRVWDIETGQCLHVLMG-------------HVAAV  242 (445)
T ss_dssp             CEEEEETTTTEEEEEEC-CCSSCEEEEEEET--T-EEEEEETTSEEEEEESSSCCEEEEEEC-------------CSSCE
T ss_pred             eEEEEECCcCcEEEEEC-CCCCcEEEEEecC--C-EEEEEeCCCEEEEEECCCCcEEEEEcC-------------CcccE
Confidence            58999999999999999 9999999999964  4 799999999999999999988877762             46788


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLH  156 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  156 (250)
                      .++.+        +++++++++.||.|++||+++++....+..+ ...+.++.+  ++.++++ +..+    .++....+
T Consensus       243 ~~~~~--------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~~-~~~d~~i~i~d~~~~~  310 (445)
T 2ovr_B          243 RCVQY--------DGRRVVSGAYDFMVKVWDPETETCLHTLQGH-TNRVYSLQF--DGIHVVS-GSLDTSIRVWDVETGN  310 (445)
T ss_dssp             EEEEE--------CSSCEEEEETTSCEEEEEGGGTEEEEEECCC-SSCEEEEEE--CSSEEEE-EETTSCEEEEETTTCC
T ss_pred             EEEEE--------CCCEEEEEcCCCEEEEEECCCCcEeEEecCC-CCceEEEEE--CCCEEEE-EeCCCeEEEEECCCCC
Confidence            88887        3678999999999999999998887776644 467888888  7777773 3222    23334455


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeec---cCCceeEEEecCCCCC
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN---LNKKVNWLCTTPTESE  233 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~  233 (250)
                      .+..+.+|...+.++.++     ++++++|+.||.|++||++++         +.+..+..   |...|.+++|+   ++
T Consensus       311 ~~~~~~~~~~~v~~~~~~-----~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~~~v~~~~~~---~~  373 (445)
T 2ovr_B          311 CIHTLTGHQSLTSGMELK-----DNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKHQSAVTCLQFN---KN  373 (445)
T ss_dssp             EEEEECCCCSCEEEEEEE-----TTEEEEEETTSCEEEEETTTC---------CEEEEECSTTSCSSCEEEEEEC---SS
T ss_pred             EEEEEcCCcccEEEEEEe-----CCEEEEEeCCCeEEEEECCCC---------cEEEEEccCCCCCCCEEEEEEC---CC
Confidence            667788999999988875     469999999999999999987         44445544   88899999984   46


Q ss_pred             eEEEeeCCceEEEEeCC
Q 025649          234 NLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       234 ~l~s~~~d~~i~vw~~~  250 (250)
                      +|++|+.||.|++||++
T Consensus       374 ~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          374 FVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             EEEEEETTSEEEEEETT
T ss_pred             EEEEEeCCCeEEEEECC
Confidence            89999999999999974

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.4e-28  Score=184.32  Aligned_cols=175  Identities=9%  Similarity=0.009  Sum_probs=131.8

Q ss_pred             EEcccceeeeeeccCCCCCeeeEEEcC--CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeE
Q 025649            5 IDIRQHCLYKSLRAGHSSICSSVQFIP--WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA   82 (250)
Q Consensus         5 wd~~~~~~~~~l~~~h~~~v~~l~~~~--~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   82 (250)
                      ||+.+++.+..+..+|.+.|.+++|+|  +++ +|++|+.||+|++||+++++.+......            +...+.+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~------------~~~~i~~  175 (343)
T 3lrv_A          109 LDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAK------------SDVEYSS  175 (343)
T ss_dssp             EETTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCC------------SSCCCCE
T ss_pred             eecCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecC------------CCCceEE
Confidence            355566656666557889999999999  998 8999999999999999998876555433            4457999


Q ss_pred             EecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE-eeccCCCCCCccceeecccceeEEEee-----eeeeccCeeee
Q 025649           83 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSKVNIRDAEME-----ILDQSGGKRLH  156 (250)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  156 (250)
                      ++|+|      ++.+|++|+.||.|++||+++++.. ..+...+...+.+++|+|++.++++.+     .||........
T Consensus       176 ~~~~p------dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~  249 (343)
T 3lrv_A          176 GVLHK------DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTL  249 (343)
T ss_dssp             EEECT------TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCB
T ss_pred             EEECC------CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcce
Confidence            99999      9999999999999999999998876 555554568999999999999998532     23333322222


Q ss_pred             eeccccCccccEE--EEEeecCCCCCcEEEEeeC-CCeEEEEecCCCc
Q 025649          157 LDYSVGGHTAAAS--CVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQ  201 (250)
Q Consensus       157 ~~~~~~~h~~~v~--~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~  201 (250)
                      .+..+..|...+.  +++|+   |+|++|++++. |+.|++|++....
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~---~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          250 AYPTYTIPEFKTGTVTYDID---DSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             SSCCCBC-----CCEEEEEC---TTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             eecccccccccccceEEEEC---CCCCEEEEecCCCCcEEEEEEcccc
Confidence            2223333444444  69999   89999999988 9999999997653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.1e-28  Score=191.58  Aligned_cols=208  Identities=10%  Similarity=0.077  Sum_probs=156.5

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC---CccceecCCCC------------------CC-----------
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR---PNKIVNFGLPE------------------NN-----------   68 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~------------------~~-----------   68 (250)
                      ..++.+++|+|+|+ +|+++ .++.|++||+.+++   .+..+..+...                  ..           
T Consensus         4 ~~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            4 IHPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             ECCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             cccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            35789999999998 66665 47899999999998   65555422110                  00           


Q ss_pred             ------------CCCCcccCCCceeEEecCCCcccCCCCCEE-EEEeCCCeEEEEeCC--CceeEeeccC-CCCCCccce
Q 025649           69 ------------GNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIE--SELNISRSKS-TTKPLKGSQ  132 (250)
Q Consensus        69 ------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~--~~~~~~~~~~-~~~~~~~~~  132 (250)
                                  .......+...|.+++|+|      ++++| ++++.||.|++||+.  ++.....+.. .....+.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~  155 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTS------DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAI  155 (450)
T ss_dssp             ------------------CCCCCEEEEEECT------TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEE
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcC------CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEE
Confidence                        0000112344799999999      89986 899999999999999  7766665542 334778999


Q ss_pred             eecccceeEEEee------eeeeccCeeee-eeccccCccccEEEEEeecCCCC---CcEEEEeeCCCeEEEEecCCCcc
Q 025649          133 STSKVNIRDAEME------ILDQSGGKRLH-LDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQG  202 (250)
Q Consensus       133 ~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~---~~~l~s~~~d~~i~iwd~~~~~~  202 (250)
                      +|+|+++++++.+      .++........ ....+.+|...|.+++|+   |+   +++|++|+.|+.|++||++++  
T Consensus       156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s---p~~~~~~~l~s~~~d~~i~vwd~~~~--  230 (450)
T 2vdu_B          156 SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI---KDSDGHQFIITSDRDEHIKISHYPQC--  230 (450)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE---ECTTSCEEEEEEETTSCEEEEEESCT--
T ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc---CCCCCCcEEEEEcCCCcEEEEECCCC--
Confidence            9999999998432      22222222222 344778899999999999   78   899999999999999999987  


Q ss_pred             eecccccceeee-eeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          203 VQTSINNDLLIK-NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       203 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                             ..+.. ..+|...|.+++|+  ++++|++++.|+.|++||++
T Consensus       231 -------~~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~  270 (450)
T 2vdu_B          231 -------FIVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWK  270 (450)
T ss_dssp             -------TCEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETT
T ss_pred             -------ceeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECC
Confidence                   44444 56899999999998  88899999999999999974

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=7.6e-28  Score=182.62  Aligned_cols=201  Identities=12%  Similarity=0.037  Sum_probs=156.9

Q ss_pred             eeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC---ccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649           14 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP---NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM   90 (250)
Q Consensus        14 ~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   90 (250)
                      .... +|.+.|.+++|+|+++ +|++++.||.|++||+.+++.   ...+. +            |...|.+++|+|   
T Consensus         5 ~~~~-~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~------------~~~~v~~~~~~~---   66 (342)
T 1yfq_A            5 QIEQ-APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSL-R------------YKHPLLCCNFID---   66 (342)
T ss_dssp             ECSS-CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEE-E------------CSSCEEEEEEEE---
T ss_pred             eccc-CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccceeee-e------------cCCceEEEEECC---
Confidence            3345 8999999999999999 899999999999999988762   22222 2            678999999998   


Q ss_pred             cCCCCC-EEEEEeCCCeEEEEeC-CCceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCee---------e
Q 025649           91 LDKTNK-ICVVAKGDGVVDVINI-ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKR---------L  155 (250)
Q Consensus        91 ~~~~~~-~l~~~~~d~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---------~  155 (250)
                         +++ +|++++.||.|++||+ .+++........+...+.+++|+| +..+++ +..+    .++...         .
T Consensus        67 ---~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~  141 (342)
T 1yfq_A           67 ---NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIA-ASWDGLIEVIDPRNYGDGVIAVKN  141 (342)
T ss_dssp             ---SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEE-EETTSEEEEECHHHHTTBCEEEEE
T ss_pred             ---CCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEE-EcCCCeEEEEcccccccccccccC
Confidence               899 9999999999999999 877653322211457899999999 888874 3222    222233         4


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC-CcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR-FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  234 (250)
                      +++..+. |...|.+++|+   +++  +++++.|+.|++||+++ +..       ........|...+.+++|+|.++++
T Consensus       142 ~~~~~~~-~~~~v~~~~~~---~~~--l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~i~~i~~~~~~~~~  208 (342)
T 1yfq_A          142 LNSNNTK-VKNKIFTMDTN---SSR--LIVGMNNSQVQWFRLPLCEDD-------NGTIEESGLKYQIRDVALLPKEQEG  208 (342)
T ss_dssp             SCSSSSS-SCCCEEEEEEC---SSE--EEEEESTTEEEEEESSCCTTC-------CCEEEECSCSSCEEEEEECSGGGCE
T ss_pred             CeeeEEe-eCCceEEEEec---CCc--EEEEeCCCeEEEEECCccccc-------cceeeecCCCCceeEEEECCCCCCE
Confidence            4555666 88999999999   665  99999999999999998 532       2333455788899999999636789


Q ss_pred             EEEeeCCceEEEEeCC
Q 025649          235 LVVCDTSKVVKVYSIS  250 (250)
Q Consensus       235 l~s~~~d~~i~vw~~~  250 (250)
                      +++++.||.|++|+++
T Consensus       209 l~~~~~dg~i~i~~~~  224 (342)
T 1yfq_A          209 YACSSIDGRVAVEFFD  224 (342)
T ss_dssp             EEEEETTSEEEEEECC
T ss_pred             EEEEecCCcEEEEEEc
Confidence            9999999999999973

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.5e-26  Score=178.67  Aligned_cols=211  Identities=11%  Similarity=0.065  Sum_probs=163.5

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+++++.+..+. .|. .+.+++|+|+++.++++++.|+.|++||+.+++.+..+..+              ..+
T Consensus        13 ~v~v~d~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~--------------~~v   76 (391)
T 1l0q_A           13 NISVIDVTSNKVTATIP-VGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--------------SSP   76 (391)
T ss_dssp             EEEEEETTTTEEEEEEE-CSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--------------SSE
T ss_pred             EEEEEECCCCeEEEEee-cCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC--------------CCc
Confidence            48999999999999998 665 58999999999844578889999999999999888887733              489


Q ss_pred             eEEecCCCcccCCCCCEEE-EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee----eeeccCeee
Q 025649           81 HAIAIPDADMLDKTNKICV-VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI----LDQSGGKRL  155 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  155 (250)
                      .+++|+|      ++++|+ +++.++.|++||+.+++........  ..+.+++|+|+++.++..+.    ...++....
T Consensus        77 ~~~~~sp------dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  148 (391)
T 1l0q_A           77 QGVAVSP------DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK  148 (391)
T ss_dssp             EEEEECT------TSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             cceEECC------CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC--CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            9999999      888775 4556799999999998877666554  56789999999998753322    111222233


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEE-EEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  234 (250)
                      +.+..+..+ ..+.+++|+   |+++++ ++++.|+.|++||++++         +.. ....+...+..++|+| ++++
T Consensus       149 ~~~~~~~~~-~~~~~~~~~---~dg~~l~~~~~~~~~v~~~d~~~~---------~~~-~~~~~~~~~~~~~~~~-~g~~  213 (391)
T 1l0q_A          149 AVINTVSVG-RSPKGIAVT---PDGTKVYVANFDSMSISVIDTVTN---------SVI-DTVKVEAAPSGIAVNP-EGTK  213 (391)
T ss_dssp             EEEEEEECC-SSEEEEEEC---TTSSEEEEEETTTTEEEEEETTTT---------EEE-EEEECSSEEEEEEECT-TSSE
T ss_pred             cEEEEEecC-CCcceEEEC---CCCCEEEEEeCCCCEEEEEECCCC---------eEE-EEEecCCCccceEECC-CCCE
Confidence            344455544 456899999   888877 67788999999999986         332 3334567889999998 8888


Q ss_pred             EEEee---CCceEEEEeCC
Q 025649          235 LVVCD---TSKVVKVYSIS  250 (250)
Q Consensus       235 l~s~~---~d~~i~vw~~~  250 (250)
                      +++++   .++.|++||++
T Consensus       214 l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          214 AYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             EEEEEECSSCCEEEEEETT
T ss_pred             EEEEecCcCCCcEEEEECC
Confidence            88877   68999999974

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=6.1e-26  Score=175.31  Aligned_cols=211  Identities=16%  Similarity=0.061  Sum_probs=162.5

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+.+++.+..+. .+. .+.+++|+|+++.++++++.++.|++||+.+++.+..+..              ...+
T Consensus        55 ~i~v~d~~~~~~~~~~~-~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--------------~~~~  118 (391)
T 1l0q_A           55 DVSIIDTATNNVIATVP-AGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT--------------GKSP  118 (391)
T ss_dssp             EEEEEETTTTEEEEEEE-CSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--------------SSSE
T ss_pred             eEEEEECCCCeEEEEEE-CCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC--------------CCCc
Confidence            48999999999999998 544 8999999999994446777889999999999988777763              3568


Q ss_pred             eEEecCCCcccCCCCCEE-EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeee----eeccCeee
Q 025649           81 HAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL----DQSGGKRL  155 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  155 (250)
                      .+++|+|      +++.+ ++++.|+.|++||+.+++........  ..+..++|+|+++.++..+..    ..++....
T Consensus       119 ~~~~~s~------dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~  190 (391)
T 1l0q_A          119 LGLALSP------DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN  190 (391)
T ss_dssp             EEEEECT------TSSEEEEEETTTTEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ceEEECC------CCCEEEEEeCCCCEEEEEECCCCcEEEEEecC--CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            9999998      88877 78888999999999998877766554  456899999999887533221    12222222


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEee---CCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES  232 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (250)
                      +.+..+. +...+.+++|+   |+++++++++   .++.|++||++++         +.+..+..|. .+.+++|+| ++
T Consensus       191 ~~~~~~~-~~~~~~~~~~~---~~g~~l~~~~~~~~~~~v~~~d~~~~---------~~~~~~~~~~-~~~~~~~s~-dg  255 (391)
T 1l0q_A          191 SVIDTVK-VEAAPSGIAVN---PEGTKAYVTNVDKYFNTVSMIDTGTN---------KITARIPVGP-DPAGIAVTP-DG  255 (391)
T ss_dssp             EEEEEEE-CSSEEEEEEEC---TTSSEEEEEEECSSCCEEEEEETTTT---------EEEEEEECCS-SEEEEEECT-TS
T ss_pred             eEEEEEe-cCCCccceEEC---CCCCEEEEEecCcCCCcEEEEECCCC---------eEEEEEecCC-CccEEEEcc-CC
Confidence            3333333 45678999999   8999888887   6899999999987         4444444443 578899998 77


Q ss_pred             CeE-EEeeCCceEEEEeCC
Q 025649          233 ENL-VVCDTSKVVKVYSIS  250 (250)
Q Consensus       233 ~~l-~s~~~d~~i~vw~~~  250 (250)
                      +++ ++++.|+.|++||++
T Consensus       256 ~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          256 KKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             SEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEcCCCCEEEEEECC
Confidence            766 677899999999974

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.1e-27  Score=183.73  Aligned_cols=205  Identities=8%  Similarity=-0.043  Sum_probs=145.3

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccc-------eecCCC---------CCCC-CCCcccCCCcee
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI-------VNFGLP---------ENNG-NAGQCYNPAFVH   81 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~-------~~~~~~---------~~~~-~~~~~~~~~~v~   81 (250)
                      .-...|.+++|+|||+ ++||++.|++|+  |...++.+..       +.+...         .... ......+...|.
T Consensus        13 ~~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~   89 (588)
T 2j04_A           13 EFEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPR   89 (588)
T ss_dssp             CCSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEE
T ss_pred             HhhccEEEEEECCCCC-EEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEE
Confidence            4567899999999999 999999999998  7655553310       100000         0000 111113467899


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC----CCccceeecccceeEEEee------eeeecc
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK----PLKGSQSTSKVNIRDAEME------ILDQSG  151 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~------~~~~~~  151 (250)
                      +++|+|      +|++||+++.||.|++||.+.  ...... +..    ..+.+++|||||+++++.+      .|+...
T Consensus        90 ~vawSP------dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~  160 (588)
T 2j04_A           90 VCKPSP------IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK  160 (588)
T ss_dssp             EEEECS------SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred             EEEECC------CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence            999999      999999999999999999654  444333 321    2589999999999999522      344333


Q ss_pred             Cee--e--eeeccc----cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee-eccCCce
Q 025649          152 GKR--L--HLDYSV----GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-INLNKKV  222 (250)
Q Consensus       152 ~~~--~--~~~~~~----~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v  222 (250)
                      ...  .  -.+.++    .+|...|.+++|+   |+|  +++++.|+.|++||+......      .....+ .+|...|
T Consensus       161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS---Pdg--Laass~D~tVrlWd~~~~~~~------~~~~tL~~~h~~~V  229 (588)
T 2j04_A          161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWY---EDV--LVAALSNNSVFSMTVSASSHQ------PVSRMIQNASRRKI  229 (588)
T ss_dssp             CTTTCCCCEEEEEEECSCTTCCCCEEEEEEE---TTE--EEEEETTCCEEEECCCSSSSC------CCEEEEECCCSSCC
T ss_pred             CccccccceeeeeeecccccccccEEEEEEc---CCc--EEEEeCCCeEEEEECCCCccc------cceeeecccccCcE
Confidence            211  0  123444    6788999999999   888  888889999999999886321      122334 3788899


Q ss_pred             eEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          223 NWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       223 ~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .+++|+   ++.|++++ ++.|++||+.
T Consensus       230 ~svaFs---g~~LASa~-~~tIkLWd~~  253 (588)
T 2j04_A          230 TDLKIV---DYKVVLTC-PGYVHKIDLK  253 (588)
T ss_dssp             CCEEEE---TTEEEEEC-SSEEEEEETT
T ss_pred             EEEEEE---CCEEEEEe-CCeEEEEECC
Confidence            999998   46888887 6999999963

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=3.5e-26  Score=178.95  Aligned_cols=212  Identities=14%  Similarity=0.116  Sum_probs=163.5

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+++++.+..+. .|...+.+++|+|+++.++++++.|+.|++||+++++.+..+..              ...+
T Consensus       192 ~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--------------~~~~  256 (433)
T 3bws_A          192 AVHVFDLKTLAYKATVD-LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK--------------IGLP  256 (433)
T ss_dssp             EEEEEETTTCCEEEEEE-CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC--------------CSEE
T ss_pred             EEEEEECCCceEEEEEc-CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC--------------CCCc
Confidence            47899999999999999 99999999999999994446777899999999998887766652              3568


Q ss_pred             eEEecCCCcccCCCCCEEEEEe--------CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----
Q 025649           81 HAIAIPDADMLDKTNKICVVAK--------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----  148 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~--------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  148 (250)
                      .+++++|      +++++++++        .|+.|++||+++++........  ..+..++|+|+++.++..+..+    
T Consensus       257 ~~~~~~~------~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~v~  328 (433)
T 3bws_A          257 RGLLLSK------DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP--GNKRHIVSGNTENKIYVSDMCCSKIE  328 (433)
T ss_dssp             EEEEECT------TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE--ECEEEEEECSSTTEEEEEETTTTEEE
T ss_pred             eEEEEcC------CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC--CCcceEEECCCCCEEEEEecCCCEEE
Confidence            9999998      999998887        5899999999988776655332  4677899999997665332211    


Q ss_pred             eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeC---------------CCeEEEEecCCCcceecccccceee
Q 025649          149 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN---------------DKLVKVWDCSRFQGVQTSINNDLLI  213 (250)
Q Consensus       149 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~~  213 (250)
                      .++....+.+..+. +...+.+++|+   |+|+++++++.               ||.|++||+.++         +.+.
T Consensus       329 v~d~~~~~~~~~~~-~~~~~~~~~~s---~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---------~~~~  395 (433)
T 3bws_A          329 VYDLKEKKVQKSIP-VFDKPNTIALS---PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---------TVKE  395 (433)
T ss_dssp             EEETTTTEEEEEEE-CSSSEEEEEEC---TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---------EEEE
T ss_pred             EEECCCCcEEEEec-CCCCCCeEEEc---CCCCEEEEEecCCCccccccccccccceEEEEEECCCC---------cEEE
Confidence            11222223333443 56778999999   89998888776               579999999987         3433


Q ss_pred             eeeccCCceeEEEecCCCCCeEEEee-CCceEEEEeCC
Q 025649          214 KNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSIS  250 (250)
Q Consensus       214 ~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw~~~  250 (250)
                      .+.. ...+..++|+| ++++|++++ .|+.|++|+++
T Consensus       396 ~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          396 FWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEET
T ss_pred             EecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEec
Confidence            3333 55789999998 888888776 49999999974

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=6.3e-26  Score=177.48  Aligned_cols=212  Identities=12%  Similarity=0.083  Sum_probs=164.4

Q ss_pred             CcEEEEcccceeee-----eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649            1 MWQIIDIRQHCLYK-----SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         1 ti~iwd~~~~~~~~-----~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      +|++||+.+++...     .+. +|...|.+++|+|++. ++++++.|+.|++||+++++.+..+..             
T Consensus       145 ~i~~~d~~~g~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~s~~~d~~v~~~d~~~~~~~~~~~~-------------  209 (433)
T 3bws_A          145 GMDVLDINSGQTVRLSPPEKYK-KKLGFVETISIPEHNE-LWVSQMQANAVHVFDLKTLAYKATVDL-------------  209 (433)
T ss_dssp             SEEEEETTTCCEEEECCCHHHH-TTCCEEEEEEEGGGTE-EEEEEGGGTEEEEEETTTCCEEEEEEC-------------
T ss_pred             eEEEEECCCCeEeeecCccccc-ccCCceeEEEEcCCCE-EEEEECCCCEEEEEECCCceEEEEEcC-------------
Confidence            48999999998887     566 8999999999999998 899999999999999999888777762             


Q ss_pred             CCCceeEEecCCCcccCCCCCEEE-EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee------
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD------  148 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  148 (250)
                      +...+.+++|+|      +++.++ +++.|+.|++||+++++....+...  ..+.+++++|+++.++..+...      
T Consensus       210 ~~~~~~~~~~~~------~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~  281 (433)
T 3bws_A          210 TGKWSKILLYDP------IRDLVYCSNWISEDISVIDRKTKLEIRKTDKI--GLPRGLLLSKDGKELYIAQFSASNQESG  281 (433)
T ss_dssp             SSSSEEEEEEET------TTTEEEEEETTTTEEEEEETTTTEEEEECCCC--SEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred             CCCCeeEEEEcC------CCCEEEEEecCCCcEEEEECCCCcEEEEecCC--CCceEEEEcCCCCEEEEEECCCCccccC
Confidence            356789999998      888775 5558999999999998877666553  5689999999999888544211      


Q ss_pred             -----eccCeeeeeeccccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCce
Q 025649          149 -----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV  222 (250)
Q Consensus       149 -----~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  222 (250)
                           .++....+.+..+ .|...+.+++|+   |+++ ++++++.|+.|++||+.++         +... ...+...+
T Consensus       282 dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~---~~g~~l~~~~~~~~~v~v~d~~~~---------~~~~-~~~~~~~~  347 (433)
T 3bws_A          282 GGRLGIYSMDKEKLIDTI-GPPGNKRHIVSG---NTENKIYVSDMCCSKIEVYDLKEK---------KVQK-SIPVFDKP  347 (433)
T ss_dssp             CEEEEEEETTTTEEEEEE-EEEECEEEEEEC---SSTTEEEEEETTTTEEEEEETTTT---------EEEE-EEECSSSE
T ss_pred             CCeEEEEECCCCcEEeec-cCCCCcceEEEC---CCCCEEEEEecCCCEEEEEECCCC---------cEEE-EecCCCCC
Confidence                 1121222222222 455678999999   7886 5567788999999999986         3333 33467789


Q ss_pred             eEEEecCCCCCeEEEeeC---------------CceEEEEeCC
Q 025649          223 NWLCTTPTESENLVVCDT---------------SKVVKVYSIS  250 (250)
Q Consensus       223 ~~~~~~~~~~~~l~s~~~---------------d~~i~vw~~~  250 (250)
                      ..++|+| +++++++++.               ||.|++||+.
T Consensus       348 ~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~  389 (433)
T 3bws_A          348 NTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT  389 (433)
T ss_dssp             EEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred             CeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence            9999998 8888888775               5799999973

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=9.8e-26  Score=169.28  Aligned_cols=195  Identities=16%  Similarity=0.210  Sum_probs=150.4

Q ss_pred             eeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC
Q 025649           24 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG  103 (250)
Q Consensus        24 v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~  103 (250)
                      .++|+||+++  +|++| .|++|+|||+.+++.+..+..+.           |...|.+++|+|      ++++|++|+.
T Consensus        28 ~~~l~WS~~~--~lAvg-~D~tV~iWd~~tg~~~~~~~~~~-----------~~~~V~~v~~~~------~~~~l~sgs~   87 (318)
T 4ggc_A           28 LNLVDWSSGN--VLAVA-LDNSVYLWSASSGDILQLLQMEQ-----------PGEYISSVAWIK------EGNYLAVGTS   87 (318)
T ss_dssp             CBCEEECTTS--EEEEE-ETTEEEEEETTTCCEEEEEECCS-----------TTCCEEEEEECT------TSSEEEEEET
T ss_pred             ceEEEECCCC--EEEEE-eCCEEEEEECCCCCEEEEEEecC-----------CCCeEEEEEECC------CCCEEEEEEC
Confidence            5789999875  67766 48999999999999888876441           567899999999      9999999999


Q ss_pred             CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec-----cCeeeeeeccccCccccEEEEEeecCCC
Q 025649          104 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS-----GGKRLHLDYSVGGHTAAASCVAFSMFGE  178 (250)
Q Consensus       104 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~~~~~p~~~  178 (250)
                      ||.|++||+++++.+.....+. ..+  ..+++++..++ .+..+..     .......+..+.+|...+.++.++   +
T Consensus        88 Dg~v~iw~~~~~~~~~~~~~h~-~~~--~~~~~~~~~l~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  160 (318)
T 4ggc_A           88 SAEVQLWDVQQQKRLRNMTSHS-ARV--GSLSWNSYILS-SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA---P  160 (318)
T ss_dssp             TSEEEEEETTTTEEEEEEECCS-SCE--EEEEEETTEEE-EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC---T
T ss_pred             CCcEEEeecCCceeEEEecCcc-ceE--EEeecCCCEEE-EEecCCceEeeecCCCceeEEEEcCccCceEEEEEc---C
Confidence            9999999999998887766543 333  34556666666 3332221     112233456678899999999999   8


Q ss_pred             CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE--EEeeCCceEEEEeCC
Q 025649          179 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL--VVCDTSKVVKVYSIS  250 (250)
Q Consensus       179 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l--~s~~~d~~i~vw~~~  250 (250)
                      +++++++++.|+.|++||+++++...     ........|...|..++++|.++..+  ++++.++.|++||.+
T Consensus       161 ~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~  229 (318)
T 4ggc_A          161 DGRHLASGGNDNLVNVWPSAPGEGGW-----VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC  229 (318)
T ss_dssp             TSSEEEEEETTSCEEEEESSCBTTBS-----CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT
T ss_pred             CCCEEEEEecCcceeEEECCCCcccc-----cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc
Confidence            99999999999999999999875432     33455667888999999998666554  457789999999963

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.95  E-value=8.6e-26  Score=176.20  Aligned_cols=196  Identities=16%  Similarity=0.213  Sum_probs=153.0

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  102 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  102 (250)
                      .++.|+|++++  +|++|. |++|+|||..+++....+..+.           |...|++++|+|      ++++|++|+
T Consensus       107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~~~~-----------~~~~V~sv~fsp------dg~~lasgs  166 (420)
T 4gga_A          107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQMEQ-----------PGEYISSVAWIK------EGNYLAVGT  166 (420)
T ss_dssp             TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEECCS-----------TTCCEEEEEECT------TSSEEEEEE
T ss_pred             cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEEecC-----------CCCcEEEEEECC------CCCEEEEEE
Confidence            35779999764  677665 8999999999999888776441           567899999999      999999999


Q ss_pred             CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc-----CeeeeeeccccCccccEEEEEeecCC
Q 025649          103 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG-----GKRLHLDYSVGGHTAAASCVAFSMFG  177 (250)
Q Consensus       103 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~p~~  177 (250)
                      .||.|++||+++++.+.....+ ...+.++++  ++..++ .+..+...     ......+..+.+|...+..+.++   
T Consensus       167 ~Dg~v~iWd~~~~~~~~~~~~h-~~~v~~~s~--~~~~l~-sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~---  239 (420)
T 4gga_A          167 SSAEVQLWDVQQQKRLRNMTSH-SARVGSLSW--NSYILS-SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA---  239 (420)
T ss_dssp             TTSCEEEEETTTTEEEEEECCC-SSCEEEEEE--ETTEEE-EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC---
T ss_pred             CCCeEEEEEcCCCcEEEEEeCC-CCceEEEee--CCCEEE-EEeCCCceeEeeecccceeeEEecccccceeeeeec---
Confidence            9999999999999888776654 355555554  556666 33333221     12233456778999999999999   


Q ss_pred             CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE--eeCCceEEEEeCC
Q 025649          178 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV--CDTSKVVKVYSIS  250 (250)
Q Consensus       178 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s--~~~d~~i~vw~~~  250 (250)
                      |+++++++++.|+.+++||..++....     ..+.....|...|.+++|+|.++.++++  |+.|+.|++||++
T Consensus       240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~-----~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~  309 (420)
T 4gga_A          240 PDGRHLASGGNDNLVNVWPSAPGEGGW-----VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC  309 (420)
T ss_dssp             TTSSEEEEEETTSCEEEEESSCCSSCS-----CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred             CCCCeeeeeeccccceEEeeccccccc-----eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence            899999999999999999998864321     3445677899999999999977777766  4589999999974

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=9.8e-26  Score=172.11  Aligned_cols=225  Identities=12%  Similarity=0.073  Sum_probs=155.0

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      ++|||+++++...... .  ..+..+++.++++.++++++.|++|++||+.+++.+..+..              ...|.
T Consensus        42 ~~iw~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~--------------~~~v~  104 (355)
T 3vu4_A           42 FEIYNVHPVAHIMSQE-M--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV--------------DAPVK  104 (355)
T ss_dssp             EEEEEETTEEEEEEEE-C--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC--------------SSCEE
T ss_pred             EEEEecCCcceeeeee-c--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEEC--------------CCceE
Confidence            6899998887765554 2  25888999998884447788899999999999988877762              34555


Q ss_pred             EEecCCCc----------ccCC-CC------------------CEEEE--EeCCCeEEEEeCCCcee-------------
Q 025649           82 AIAIPDAD----------MLDK-TN------------------KICVV--AKGDGVVDVINIESELN-------------  117 (250)
Q Consensus        82 ~~~~~~~~----------~~~~-~~------------------~~l~~--~~~d~~i~~~d~~~~~~-------------  117 (250)
                      ++.+++..          .++. ++                  .+++.  |+.||.|++||++++..             
T Consensus       105 ~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~  184 (355)
T 3vu4_A          105 DLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAI  184 (355)
T ss_dssp             EEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC----------------
T ss_pred             EEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCcccccccccccccc
Confidence            55555410          0000 11                  34444  57899999999987541             


Q ss_pred             ---EeeccCCCCCCccceeecccceeEEEeeee-----eeccCeeeeeecccc-C-ccccEEEEEeecCCCCCcEEEEee
Q 025649          118 ---ISRSKSTTKPLKGSQSTSKVNIRDAEMEIL-----DQSGGKRLHLDYSVG-G-HTAAASCVAFSMFGERGKYLISGG  187 (250)
Q Consensus       118 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~-h~~~v~~~~~~p~~~~~~~l~s~~  187 (250)
                         ...+ ..+...+.+++|+|+|+++++ +..     ..++....+++..+. + |...|.+++|+   |++++|++++
T Consensus       185 ~p~~~~~-~~h~~~v~~~~~s~~g~~l~s-~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s---~~~~~l~s~s  259 (355)
T 3vu4_A          185 LGKGVLI-KAHTNPIKMVRLNRKSDMVAT-CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWS---TDGSKLAVVS  259 (355)
T ss_dssp             --CCEEE-CCCSSCEEEEEECTTSSEEEE-EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEEC---TTSCEEEEEE
T ss_pred             CcccEEE-EccCCceEEEEECCCCCEEEE-EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEEC---CCCCEEEEEE
Confidence               2222 344688999999999999984 333     333445556667777 5 99999999999   8999999999


Q ss_pred             CCCeEEEEecCCCcceecccccc-e-------------eeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          188 NDKLVKVWDCSRFQGVQTSINND-L-------------LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       188 ~d~~i~iwd~~~~~~~~~~~~~~-~-------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .|++|++||++.........-.. .             .............++|++ +++.+++++.||.+++|++
T Consensus       260 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          260 DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS-ESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS-SSEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC-CCCEEEEEeCCCeEEEEEE
Confidence            99999999998753221000000 0             000011222346688997 8889999999999999986

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=3e-26  Score=169.54  Aligned_cols=174  Identities=11%  Similarity=0.036  Sum_probs=122.6

Q ss_pred             CcEEEEc-ccceeeeeeccCCCCCeeeEEEcC---CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            1 MWQIIDI-RQHCLYKSLRAGHSSICSSVQFIP---WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         1 ti~iwd~-~~~~~~~~l~~~h~~~v~~l~~~~---~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      +|++|++ .+++.+..+. +|...+..++|+|   +++ +|++++.|++|+|||++++++++++..+..          +
T Consensus       158 ~V~~~~~s~dG~~~~s~~-~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~----------~  225 (356)
T 2w18_A          158 QVEVMTFAEDGGGKENQF-LMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKKMHIDDS----------Y  225 (356)
T ss_dssp             EEEEEEECTTSCEEEEEE-ECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEEEECCC------------
T ss_pred             cEEEEEECCCCceeeeec-cCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEEEcCCCc----------c
Confidence            4788888 4578888888 8888888888888   667 899999999999999999999999873310          1


Q ss_pred             CCceeEEecCCCcccCCCCCEE------------EEEeCCCeEEEEeCCCceeEeecc----CCCCCCccceeeccccee
Q 025649           77 PAFVHAIAIPDADMLDKTNKIC------------VVAKGDGVVDVINIESELNISRSK----STTKPLKGSQSTSKVNIR  140 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l------------~~~~~d~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  140 (250)
                      ...+.+++|+|      +++++            ++|+.|++|++||..+++.+....    ..+...  .+..+.++..
T Consensus       226 v~~v~~vafSp------dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~--~lsg~~sg~~  297 (356)
T 2w18_A          226 QASVCHKAYSE------MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR--FLEGDVKDHC  297 (356)
T ss_dssp             -CCCEEEEEEE------TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC--EEEEEEETTE
T ss_pred             eeeeEEEEECC------CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce--eEccccCCCE
Confidence            23566778888      77765            678899999999999988764431    111111  2222333445


Q ss_pred             EEEeee----eeeccCeeeeeeccccCccccEE-EEEeecCCCCCcEEEEeeCCCeEEEEecC
Q 025649          141 DAEMEI----LDQSGGKRLHLDYSVGGHTAAAS-CVAFSMFGERGKYLISGGNDKLVKVWDCS  198 (250)
Q Consensus       141 ~~~~~~----~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~~~l~s~~~d~~i~iwd~~  198 (250)
                      ++ .+.    ...++....+++.++.+|...+. +++|+   |+|++|++|+.|++|+|||+.
T Consensus       298 lA-SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS---PDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          298 AA-AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS---GTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             EE-EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC---SSSSEEEEECTTSCEEEEEEC
T ss_pred             EE-EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC---CCCCEEEEEECCCcEEEecCC
Confidence            55 332    22344555667778889987655 58999   899999999999999999963

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1.5e-24  Score=168.83  Aligned_cols=208  Identities=10%  Similarity=0.000  Sum_probs=155.1

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC---eEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS---KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      +|++||+. ++....+. +|...|.+++|+|+|+ .|++++.++   .|++||+.+++......              +.
T Consensus       160 ~i~i~d~~-g~~~~~l~-~~~~~v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~tg~~~~l~~--------------~~  222 (415)
T 2hqs_A          160 ELRVSDYD-GYNQFVVH-RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQVAS--------------FP  222 (415)
T ss_dssp             EEEEEETT-SCSCEEEE-EESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCEEEEEC--------------CS
T ss_pred             eEEEEcCC-CCCCEEEe-CCCCcceeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCcEEEeec--------------CC
Confidence            47899997 45567888 8999999999999999 899888875   99999999887653322              35


Q ss_pred             CceeEEecCCCcccCCCCCEEE-EEeCCC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----ec
Q 025649           78 AFVHAIAIPDADMLDKTNKICV-VAKGDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QS  150 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~-~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  150 (250)
                      ..+.+++|+|      +++.|+ +++.++  .|++||+++++... +.. +...+.+++|+|+|+.++.....+    .+
T Consensus       223 ~~~~~~~~sp------dg~~la~~~~~~g~~~i~~~d~~~~~~~~-l~~-~~~~~~~~~~spdg~~l~~~s~~~g~~~i~  294 (415)
T 2hqs_A          223 RHNGAPAFSP------DGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVY  294 (415)
T ss_dssp             SCEEEEEECT------TSSEEEEEECTTSSCEEEEEETTTCCEEE-CCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             CcccCEEEcC------CCCEEEEEEecCCCceEEEEECCCCCEEe-CcC-CCCcccceEECCCCCEEEEEECCCCCcEEE
Confidence            6789999999      999887 666655  49999999877533 222 236788999999999888533211    11


Q ss_pred             --cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC---CeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649          151 --GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL  225 (250)
Q Consensus       151 --~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (250)
                        +....+ ...+..+...+.+++|+   |+|++|++++.+   ..|++||+.++         +. ..+..+. .+..+
T Consensus       295 ~~d~~~~~-~~~l~~~~~~~~~~~~s---pdG~~l~~~~~~~g~~~i~~~d~~~~---------~~-~~l~~~~-~~~~~  359 (415)
T 2hqs_A          295 KVNINGGA-PQRITWEGSQNQDADVS---SDGKFMVMVSSNGGQQHIAKQDLATG---------GV-QVLSSTF-LDETP  359 (415)
T ss_dssp             EEETTSSC-CEECCCSSSEEEEEEEC---TTSSEEEEEEECSSCEEEEEEETTTC---------CE-EECCCSS-SCEEE
T ss_pred             EEECCCCC-EEEEecCCCcccCeEEC---CCCCEEEEEECcCCceEEEEEECCCC---------CE-EEecCCC-CcCCe
Confidence              111111 23344566788999999   899999988764   58999999986         33 2334443 78899


Q ss_pred             EecCCCCCeEEEeeCCc---eEEEEeC
Q 025649          226 CTTPTESENLVVCDTSK---VVKVYSI  249 (250)
Q Consensus       226 ~~~~~~~~~l~s~~~d~---~i~vw~~  249 (250)
                      +|+| +|++|++++.++   .|++||+
T Consensus       360 ~~sp-dg~~l~~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          360 SLAP-NGTMVIYSSSQGMGSVLNLVST  385 (415)
T ss_dssp             EECT-TSSEEEEEEEETTEEEEEEEET
T ss_pred             EEcC-CCCEEEEEEcCCCccEEEEEEC
Confidence            9998 899888887766   7999986

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=1.4e-25  Score=173.47  Aligned_cols=208  Identities=10%  Similarity=0.001  Sum_probs=130.1

Q ss_pred             cCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc--cCCCCCEEEEEeCCCeE
Q 025649           30 IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM--LDKTNKICVVAKGDGVV  107 (250)
Q Consensus        30 ~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~l~~~~~d~~i  107 (250)
                      .+++. +|++++.|++|+|||.++++........        ....|...|.+++|+|...  ...++++|++++.|++|
T Consensus        98 ~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~--------~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv  168 (393)
T 4gq1_A           98 PVYSL-FLACVCQDNTVRLIITKNETIITQHVLG--------GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL  168 (393)
T ss_dssp             CEEEE-EEEEEETTSCEEEEEEETTEEEEEEEEC--------TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred             CCCCC-EEEEEeCCCcEEEEECCCCccceeeeec--------ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence            34444 7999999999999999887653322111        1223789999999986321  12378899999999999


Q ss_pred             EEEeCCCceeEeeccCCCCCCccceeecccce-eEEE------eeeeeeccCeeee----------------------ee
Q 025649          108 DVINIESELNISRSKSTTKPLKGSQSTSKVNI-RDAE------MEILDQSGGKRLH----------------------LD  158 (250)
Q Consensus       108 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~----------------------~~  158 (250)
                      ++||++++......... ...+.+++|+|++. ++++      +..||........                      ..
T Consensus       169 ~~Wd~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  247 (393)
T 4gq1_A          169 IIWRLTDEGPILAGYPL-SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT  247 (393)
T ss_dssp             EEEEEETTEEEEEEEEC-SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred             EEEECCCCceeeeecCC-CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence            99999887666555444 36788999999886 4553      2334433221100                      01


Q ss_pred             ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccc----------cceeeeeeccCCceeEEEec
Q 025649          159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN----------NDLLIKNINLNKKVNWLCTT  228 (250)
Q Consensus       159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~~v~~~~~~  228 (250)
                      ....+|...+.++.|++  ++++.+++++.|+++++||+..+........          .........+.. .....++
T Consensus       248 ~~~~~~~~~v~~v~~~~--~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  324 (393)
T 4gq1_A          248 CHSSGIASSLANVRWIG--SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPS-LLGACPH  324 (393)
T ss_dssp             ----CCSSSCSEEEEET--TTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCC-SSCCEEC
T ss_pred             eecccccccceeeeeec--CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCc-ceeEEEc
Confidence            12346788899999975  7899999999999999999987643321100          000111111222 2233455


Q ss_pred             CC-CCCeEEEeeCCceEEEEeCC
Q 025649          229 PT-ESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       229 ~~-~~~~l~s~~~d~~i~vw~~~  250 (250)
                      |. ++.++++|+.||.|++||+.
T Consensus       325 ~~~~~~~~~sgs~Dg~V~lwd~~  347 (393)
T 4gq1_A          325 PRYMDYFATAHSQHGLIQLINTY  347 (393)
T ss_dssp             SSCTTEEEEEETTTTEEEEEETT
T ss_pred             cCCCCEEEEEECCCCEEEEEECC
Confidence            43 44456778899999999973

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=4.2e-23  Score=153.10  Aligned_cols=213  Identities=8%  Similarity=0.048  Sum_probs=151.4

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +|++||+.+++.. .+. .|...|.+++|+|+++ +|++++ ++.|.+||+.+ ++........            +...
T Consensus        23 ~i~~~d~~~~~~~-~~~-~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~------------~~~~   86 (297)
T 2ojh_A           23 SIEIFNIRTRKMR-VVW-QTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDTGF------------ATIC   86 (297)
T ss_dssp             EEEEEETTTTEEE-EEE-EESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEECCCTT------------CCCB
T ss_pred             eEEEEeCCCCcee-eec-cCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEecccc------------cccc
Confidence            4789999988876 445 5899999999999999 788876 78999999998 7765544322            2356


Q ss_pred             eeEEecCCCcccCCCCCEEEEEe--CCCeEEE--EeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee----ecc
Q 025649           80 VHAIAIPDADMLDKTNKICVVAK--GDGVVDV--INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSG  151 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~--~d~~i~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  151 (250)
                      +.+++|+|      ++++|++++  .++...+  +++.++... .+...  ..+..++|+|+++.++..+..+    .+.
T Consensus        87 ~~~~~~sp------dg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~l~~  157 (297)
T 2ojh_A           87 NNDHGISP------DGALYAISDKVEFGKSAIYLLPSTGGTPR-LMTKN--LPSYWHGWSPDGKSFTYCGIRDQVFDIYS  157 (297)
T ss_dssp             CSCCEECT------TSSEEEEEECTTTSSCEEEEEETTCCCCE-ECCSS--SSEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred             ccceEECC------CCCEEEEEEeCCCCcceEEEEECCCCceE-EeecC--CCccceEECCCCCEEEEEECCCCceEEEE
Confidence            88899999      999999998  3344455  455554432 22222  3478889999999887433222    111


Q ss_pred             Ce-eeeeeccccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649          152 GK-RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       152 ~~-~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                      .. .......+..+...+.+++|+   |+|++|+.++ .++.+++|++....        .....+..|...+..++|+|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~s~  226 (297)
T 2ojh_A          158 MDIDSGVETRLTHGEGRNDGPDYS---PDGRWIYFNSSRTGQMQIWRVRVDG--------SSVERITDSAYGDWFPHPSP  226 (297)
T ss_dssp             EETTTCCEEECCCSSSCEEEEEEC---TTSSEEEEEECTTSSCEEEEEETTS--------SCEEECCCCSEEEEEEEECT
T ss_pred             EECCCCcceEcccCCCccccceEC---CCCCEEEEEecCCCCccEEEECCCC--------CCcEEEecCCcccCCeEECC
Confidence            10 011223455677889999999   8999887665 58999999986321        33445566777889999998


Q ss_pred             CCCCeEEEeeCC-----------ceEEEEeCC
Q 025649          230 TESENLVVCDTS-----------KVVKVYSIS  250 (250)
Q Consensus       230 ~~~~~l~s~~~d-----------~~i~vw~~~  250 (250)
                       ++++|++++.+           +.|++||+.
T Consensus       227 -dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~  257 (297)
T 2ojh_A          227 -SGDKVVFVSYDADVFDHPRDLDVRVQLMDMD  257 (297)
T ss_dssp             -TSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred             -CCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence             88888887765           579999863

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=2.4e-23  Score=161.99  Aligned_cols=211  Identities=7%  Similarity=-0.050  Sum_probs=155.0

Q ss_pred             CcEEEEc--ccceee--eeeccCCCCCeeeEEEcCC--------------CCeEEEEecCC------CeEEEEEccCCCC
Q 025649            1 MWQIIDI--RQHCLY--KSLRAGHSSICSSVQFIPW--------------KPWEVISGGLD------SKLVMWDFSKGRP   56 (250)
Q Consensus         1 ti~iwd~--~~~~~~--~~l~~~h~~~v~~l~~~~~--------------~~~~l~s~s~d------g~v~iwd~~~~~~   56 (250)
                      +|+|||+  .+++.+  ..+. +|...+..+++++.              +. .++.++.+      ++|++||+.. ..
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~-~l~~~s~~~~~~~~~~i~i~d~~g-~~  170 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGAFRT-RIAYVVQTNGGQFPYELRVSDYDG-YN  170 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCCTTC-EEEEEEECSSSSCCEEEEEEETTS-CS
T ss_pred             EEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCcCCC-EEEEEEecCCCCccceEEEEcCCC-CC
Confidence            4799999  898877  4588 99998988887751              44 45555543      7999999974 44


Q ss_pred             ccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC---eEEEEeCCCceeEeeccCCCCCCcccee
Q 025649           57 NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESELNISRSKSTTKPLKGSQS  133 (250)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~  133 (250)
                      ...+..             +...+.+++|+|      ++++|++++.++   .|++||+++++......  ....+.+++
T Consensus       171 ~~~l~~-------------~~~~v~~~~~Sp------dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~--~~~~~~~~~  229 (415)
T 2hqs_A          171 QFVVHR-------------SPQPLMSPAWSP------DGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPA  229 (415)
T ss_dssp             CEEEEE-------------ESSCEEEEEECT------TSSEEEEEECTTSSCEEEEEETTTCCEEEEEC--CSSCEEEEE
T ss_pred             CEEEeC-------------CCCcceeeEEcC------CCCEEEEEEecCCCcEEEEEECCCCcEEEeec--CCCcccCEE
Confidence            444442             467899999999      999999999875   99999999887654322  235788999


Q ss_pred             ecccceeEEEeeeee----ec--cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeC-CC--eEEEEecCCCccee
Q 025649          134 TSKVNIRDAEMEILD----QS--GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DK--LVKVWDCSRFQGVQ  204 (250)
Q Consensus       134 ~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~  204 (250)
                      |+|||+.++..+..+    ..  +....+ ...+..|...+.+++|+   |+|++|++++. ++  .|++||+.++.   
T Consensus       230 ~spdg~~la~~~~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~s---pdg~~l~~~s~~~g~~~i~~~d~~~~~---  302 (415)
T 2hqs_A          230 FSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWF---PDSQNLAFTSDQAGRPQVYKVNINGGA---  302 (415)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEEC---TTSSEEEEEECTTSSCEEEEEETTSSC---
T ss_pred             EcCCCCEEEEEEecCCCceEEEEECCCCC-EEeCcCCCCcccceEEC---CCCCEEEEEECCCCCcEEEEEECCCCC---
Confidence            999999887433211    11  111222 24566788889999999   89999888876 44  68888988862   


Q ss_pred             cccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC---ceEEEEeCC
Q 025649          205 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS---KVVKVYSIS  250 (250)
Q Consensus       205 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~vw~~~  250 (250)
                            . .....+...+..++|+| +|++|++++.+   ..|++||+.
T Consensus       303 ------~-~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~  343 (415)
T 2hqs_A          303 ------P-QRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLA  343 (415)
T ss_dssp             ------C-EECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETT
T ss_pred             ------E-EEEecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECC
Confidence                  2 23445667888999998 89988887754   689999973

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=2e-21  Score=146.86  Aligned_cols=218  Identities=10%  Similarity=0.052  Sum_probs=154.3

Q ss_pred             CcEEEEcccceeeeeeccCCCC-CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSS-ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~-~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +|++||+.+++.+..+..++.. .+..++|+|+++.++++++.++.|.+||+.+++.+..+..+.+.        .+...
T Consensus        12 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--------~~~~~   83 (337)
T 1pby_B           12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--------ERVKS   83 (337)
T ss_dssp             EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--------EEEEC
T ss_pred             eEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc--------ccccc
Confidence            4789999999998888722322 58899999999855677888899999999999887777643000        00114


Q ss_pred             eeEEecCCCcccCCCCCEEEEEe------------CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe---
Q 025649           80 VHAIAIPDADMLDKTNKICVVAK------------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM---  144 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  144 (250)
                      +.+++|+|      ++++++++.            .++.|.+||+.+++....+...  ..+..++|+|+|++++..   
T Consensus        84 ~~~~~~s~------dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~  155 (337)
T 1pby_B           84 LFGAALSP------DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGLGRD  155 (337)
T ss_dssp             TTCEEECT------TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEESSS
T ss_pred             ccceEECC------CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCCCEEEEeCCe
Confidence            67889998      999888886            5799999999988776655543  467789999999877642   


Q ss_pred             -eeeeeccCeeeeee---------------------------------------------------c------------c
Q 025649          145 -EILDQSGGKRLHLD---------------------------------------------------Y------------S  160 (250)
Q Consensus       145 -~~~~~~~~~~~~~~---------------------------------------------------~------------~  160 (250)
                       ..++.........+                                                   .            .
T Consensus       156 i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  235 (337)
T 1pby_B          156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee
Confidence             12222111110000                                                   0            0


Q ss_pred             ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC
Q 025649          161 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT  240 (250)
Q Consensus       161 ~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  240 (250)
                      +..+...+.+++|+   |+|++++++  ++.|.+||+.++         +.+... .....+.+++|+| ++++|++++.
T Consensus       236 ~~~~~~~~~~~~~s---~dg~~l~~~--~~~v~~~d~~~~---------~~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~  299 (337)
T 1pby_B          236 VRIMDVFYFSTAVN---PAKTRAFGA--YNVLESFDLEKN---------ASIKRV-PLPHSYYSVNVST-DGSTVWLGGA  299 (337)
T ss_dssp             EEECSSCEEEEEEC---TTSSEEEEE--ESEEEEEETTTT---------EEEEEE-ECSSCCCEEEECT-TSCEEEEESB
T ss_pred             cCCCCCceeeEEEC---CCCCEEEEe--CCeEEEEECCCC---------cCccee-cCCCceeeEEECC-CCCEEEEEcC
Confidence            11122345678999   899998888  799999999987         333332 2345678899998 8888888889


Q ss_pred             CceEEEEeCC
Q 025649          241 SKVVKVYSIS  250 (250)
Q Consensus       241 d~~i~vw~~~  250 (250)
                      ++.|++||+.
T Consensus       300 ~~~i~v~d~~  309 (337)
T 1pby_B          300 LGDLAAYDAE  309 (337)
T ss_dssp             SSEEEEEETT
T ss_pred             CCcEEEEECc
Confidence            9999999973

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=1.7e-21  Score=147.14  Aligned_cols=215  Identities=8%  Similarity=0.020  Sum_probs=150.2

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC-ccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +|++||+++++.+..+. .+...+ .++|+|+++.+++++..++.|.+||+.+++. ...+..+             ...
T Consensus        21 ~v~~~d~~~~~~~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------~~~   85 (331)
T 3u4y_A           21 RISFFSTDTLEILNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG-------------QSS   85 (331)
T ss_dssp             EEEEEETTTCCEEEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC-------------SSC
T ss_pred             eEEEEeCcccceeeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC-------------CCC
Confidence            47899999999988888 666677 9999999984455555589999999998887 5555533             233


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCC---eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec-cC---
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS-GG---  152 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---  152 (250)
                      ..+++++|      ++++++++..++   .|.+||+.+++........  .....++|+|+|++++.....+.. ..   
T Consensus        86 ~~~~~~s~------dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~i~~~~  157 (331)
T 3u4y_A           86 MADVDITP------DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--YDAVGIAISPNGNGLILIDRSSANTVRRFK  157 (331)
T ss_dssp             CCCEEECT------TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--TTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred             ccceEECC------CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--CCccceEECCCCCEEEEEecCCCceEEEEE
Confidence            44489998      999998665553   8999999998877665543  456899999999877643322111 10   


Q ss_pred             ----e-eeee-eccccCccccEEEEEeecCCCCCcEEE-EeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649          153 ----K-RLHL-DYSVGGHTAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL  225 (250)
Q Consensus       153 ----~-~~~~-~~~~~~h~~~v~~~~~~p~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (250)
                          . .... ...+ .....+..++|+   |+|++++ ++..++.|.+||+.++...      ..+... .....+..+
T Consensus       158 ~~~~g~~~~~~~~~~-~~~~~~~~~~~s---pdg~~l~v~~~~~~~v~v~d~~~~~~~------~~~~~~-~~~~~~~~~  226 (331)
T 3u4y_A          158 IDADGVLFDTGQEFI-SGGTRPFNITFT---PDGNFAFVANLIGNSIGILETQNPENI------TLLNAV-GTNNLPGTI  226 (331)
T ss_dssp             ECTTCCEEEEEEEEE-CSSSSEEEEEEC---TTSSEEEEEETTTTEEEEEECSSTTSC------EEEEEE-ECSSCCCCE
T ss_pred             ECCCCcEeecCCccc-cCCCCccceEEC---CCCCEEEEEeCCCCeEEEEECCCCccc------ceeeec-cCCCCCceE
Confidence                0 0000 1122 233457899999   8998655 4556899999999987431      013333 244667889


Q ss_pred             EecCCCCCeEEEe-eCCceEEEEeCC
Q 025649          226 CTTPTESENLVVC-DTSKVVKVYSIS  250 (250)
Q Consensus       226 ~~~~~~~~~l~s~-~~d~~i~vw~~~  250 (250)
                      +|+| +|++++++ ..++.|.+||+.
T Consensus       227 ~~sp-dg~~l~v~~~~~~~i~~~d~~  251 (331)
T 3u4y_A          227 VVSR-DGSTVYVLTESTVDVFNFNQL  251 (331)
T ss_dssp             EECT-TSSEEEEECSSEEEEEEEETT
T ss_pred             EECC-CCCEEEEEEcCCCEEEEEECC
Confidence            9998 88866554 457889999963

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=2.4e-21  Score=155.29  Aligned_cols=215  Identities=9%  Similarity=0.043  Sum_probs=153.5

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEc--cCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDF--SKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|.+||..+++++.++. .+.. +..++|+|+++ +|++++.|++|++||+  .+++.+..+..+              .
T Consensus       160 ~V~v~D~~t~~~~~~i~-~g~~-~~~v~~spdg~-~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g--------------~  222 (543)
T 1nir_A          160 QIALVDGDSKKIVKVID-TGYA-VHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTKVAEIKIG--------------I  222 (543)
T ss_dssp             EEEEEETTTCCEEEEEE-CSTT-EEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEEEEEEECC--------------S
T ss_pred             eEEEEECCCceEEEEEe-cCcc-cceEEECCCCC-EEEEECCCCeEEEEECcCCCCcEEEEEecC--------------C
Confidence            48899999999999998 4433 89999999999 8999999999999999  788877777633              5


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCceeEeeccCC----------CCCCccceeecccceeEEEe---
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKST----------TKPLKGSQSTSKVNIRDAEM---  144 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~---  144 (250)
                      ....++|+|..  ..+++++++++ .+++|.+||..+++.+..+...          ....+..+.++|++..++..   
T Consensus       223 ~p~~va~sp~~--~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~  300 (543)
T 1nir_A          223 EARSVESSKFK--GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  300 (543)
T ss_dssp             EEEEEEECCST--TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CcceEEeCCCc--CCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence            67889998410  01789998887 4899999999998877665432          22367789999988776532   


Q ss_pred             ----eeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEe-eCCCeEEEEecCCCcceecccccceeeeee---
Q 025649          145 ----EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG-GNDKLVKVWDCSRFQGVQTSINNDLLIKNI---  216 (250)
Q Consensus       145 ----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---  216 (250)
                          ..++........ +..+ .+...+..+.|+   |+|++++++ ..+++|.+||+.+++         ++....   
T Consensus       301 ~g~i~vvd~~~~~~l~-~~~i-~~~~~~~~~~~s---pdg~~l~va~~~~~~v~v~D~~tg~---------l~~~i~~g~  366 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLT-VTSI-GAAPFLHDGGWD---SSHRYFMTAANNSNKVAVIDSKDRR---------LSALVDVGK  366 (543)
T ss_dssp             TTEEEEEECTTSSSCE-EEEE-ECCSSCCCEEEC---TTSCEEEEEEGGGTEEEEEETTTTE---------EEEEEECSS
T ss_pred             CCeEEEEEecCCCcce-eEEe-ccCcCccCceEC---CCCCEEEEEecCCCeEEEEECCCCe---------EEEeeccCC
Confidence                223332222111 1122 244567789999   899977655 458999999999984         333332   


Q ss_pred             -ccCCceeEEEecCCCCCeEEEee-CCceEEEEeC
Q 025649          217 -NLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI  249 (250)
Q Consensus       217 -~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw~~  249 (250)
                       .|......+ ++|..+..++++. .|++|.+||+
T Consensus       367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT  400 (543)
T ss_dssp             SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence             355443333 4564477777775 6899999996

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=1.9e-21  Score=147.75  Aligned_cols=215  Identities=11%  Similarity=0.000  Sum_probs=148.2

Q ss_pred             CcEEEEcccceeeeeeccCCC-CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHS-SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +|++||+.+++.+..+. .+. ..+..++|+|+++.+++++..++.|.+||+.+++.+..+..+...       ......
T Consensus        22 ~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~-------~~~~~~   93 (349)
T 1jmx_B           22 NLHVVDVASDTVYKSCV-MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP-------GEVGRS   93 (349)
T ss_dssp             EEEEEETTTTEEEEEEE-CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST-------TEEEEC
T ss_pred             eEEEEECCCCcEEEEEe-cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc-------cccccc
Confidence            47899999999988887 443 267899999999845567778999999999988877766533000       000123


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCC------------CeEEEEeCCCceeEe---eccCCCCCCccceeecccceeEEE-
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGD------------GVVDVINIESELNIS---RSKSTTKPLKGSQSTSKVNIRDAE-  143 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d------------~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-  143 (250)
                      +.+++|+|      +++++++++.+            +.|.+||+.+++...   ....+  ..+.+++|+|+|+.++. 
T Consensus        94 ~~~~~~sp------dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~l~~~~  165 (349)
T 1jmx_B           94 MYSFAISP------DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAADDGSLYVAG  165 (349)
T ss_dssp             SSCEEECT------TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEECTTSCEEEES
T ss_pred             ccceEECC------CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC--CcccceeECCCCcEEEcc
Confidence            67889998      99999998865            899999998854332   22222  35788899999984432 


Q ss_pred             --eeeeeeccCeeeeeeccccC----------------------------------------------------------
Q 025649          144 --MEILDQSGGKRLHLDYSVGG----------------------------------------------------------  163 (250)
Q Consensus       144 --~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------  163 (250)
                        +..++....+   .+..+..                                                          
T Consensus       166 ~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  242 (349)
T 1jmx_B          166 PDIYKMDVKTGK---YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT  242 (349)
T ss_dssp             SSEEEECTTTCC---EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT
T ss_pred             CcEEEEeCCCCc---eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccC
Confidence              1122221111   1111110                                                          


Q ss_pred             ----------ccccEEEEEeecCCC-CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649          164 ----------HTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES  232 (250)
Q Consensus       164 ----------h~~~v~~~~~~p~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (250)
                                +...+.+++|+   | ++++++++  ++.|.+||+.++         +.+.... ....+..++|+| ++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~s---p~dg~~l~~~--~~~v~~~d~~~~---------~~~~~~~-~~~~~~~~~~s~-dg  306 (349)
T 1jmx_B          243 GKTHTQEFADLTELYFTGLRS---PKDPNQIYGV--LNRLAKYDLKQR---------KLIKAAN-LDHTYYCVAFDK-KG  306 (349)
T ss_dssp             CCEEEEEEEECSSCEEEEEEC---SSCTTEEEEE--ESEEEEEETTTT---------EEEEEEE-CSSCCCEEEECS-SS
T ss_pred             CcEEecccccCCCcceeeEec---CCCCCEEEEE--cCeEEEEECccC---------eEEEEEc-CCCCccceEECC-CC
Confidence                      11235567778   8 99998888  889999999987         3333322 334577899998 78


Q ss_pred             CeEEEeeCCceEEEEeCC
Q 025649          233 ENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       233 ~~l~s~~~d~~i~vw~~~  250 (250)
                      ++|++++.++.|++||+.
T Consensus       307 ~~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          307 DKLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             SCEEEESBSSEEEEEETT
T ss_pred             CEEEEecCCCeEEEEecc
Confidence            888888889999999973

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=2.7e-20  Score=141.53  Aligned_cols=227  Identities=12%  Similarity=0.036  Sum_probs=147.1

Q ss_pred             CcEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEec-CCCeEEEEEccC-CCC--ccceecCCCCCCCCCCcc
Q 025649            1 MWQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGG-LDSKLVMWDFSK-GRP--NKIVNFGLPENNGNAGQC   74 (250)
Q Consensus         1 ti~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s-~dg~v~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~   74 (250)
                      +|++||+.+++  .+..+. .+...+..++|+|+++ +|++++ .++.|.+|++.. +..  +..+....  ....  ..
T Consensus        64 ~v~~~~~~~g~~~~~~~~~-~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~--~~p~--~~  137 (347)
T 3hfq_A           64 GIAAWQIDGQTAHKLNTVV-APGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALTLTDTVQHSG--HGPR--PE  137 (347)
T ss_dssp             EEEEEEEETTEEEEEEEEE-EESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEEEEEEEECCC--CCSS--TT
T ss_pred             eEEEEEecCCcEEEeeeee-cCCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCeeecceeecCC--CCCC--cc
Confidence            37899997665  445555 6778899999999999 566665 789999999963 322  22222110  0000  01


Q ss_pred             cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCC-CceeEe--eccCCCCCCccceeecccceeEEEee------
Q 025649           75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE-SELNIS--RSKSTTKPLKGSQSTSKVNIRDAEME------  145 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------  145 (250)
                      .....+++++|+|      +++++++...++.|.+||+. +++...  ............++|+|+|++++...      
T Consensus       138 ~~~~~~~~~~~sp------dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v  211 (347)
T 3hfq_A          138 QDGSHIHYTDLTP------DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQI  211 (347)
T ss_dssp             CSSCCEEEEEECT------TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             ccCCCceEEEECC------CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEE
Confidence            1224588899999      88877777778999999998 454332  22233334667899999999776422      


Q ss_pred             -eeeecc-CeeeeeeccccCc------cccEEEEEeecCCCCCcEE-EEeeCCCeEEEEecCCCcceecccccceeeeee
Q 025649          146 -ILDQSG-GKRLHLDYSVGGH------TAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI  216 (250)
Q Consensus       146 -~~~~~~-~~~~~~~~~~~~h------~~~v~~~~~~p~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  216 (250)
                       .++... ......+..+...      ...+..++|+   |+|++| ++...++.|.+||+......      ..+....
T Consensus       212 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s---pdG~~l~v~~~~~~~v~v~~~~~~g~~------~~~~~~~  282 (347)
T 3hfq_A          212 ASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS---HDGHFLYVSNRGYNTLAVFAVTADGHL------TLIQQIS  282 (347)
T ss_dssp             EEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC---TTSCEEEEEEETTTEEEEEEECGGGCE------EEEEEEE
T ss_pred             EEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC---CCCCEEEEEeCCCCEEEEEEECCCCcE------EEeEEEe
Confidence             222221 1111222222221      1458899999   899977 55566899999999742111      3344455


Q ss_pred             ccCCceeEEEecCCCCCeEEEeeC-CceEEEEeC
Q 025649          217 NLNKKVNWLCTTPTESENLVVCDT-SKVVKVYSI  249 (250)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~vw~~  249 (250)
                      .+...+..++|+| |+++|++++. ++.|.+|++
T Consensus       283 ~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          283 TEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             CSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             cCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEE
Confidence            5666788999998 8888887765 589999954

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=3.5e-22  Score=156.09  Aligned_cols=167  Identities=14%  Similarity=0.083  Sum_probs=119.9

Q ss_pred             CCCCeeeEEEcCCCCeEEE----EecCCCeEEEEEccCC--------CCccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649           20 HSSICSSVQFIPWKPWEVI----SGGLDSKLVMWDFSKG--------RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD   87 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~----s~s~dg~v~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   87 (250)
                      |...|.+++|+|+++ +|+    +|+.|++|++||++++        +.+..+..          ...|...|.+++|+|
T Consensus        91 ~~~~v~~l~~spdg~-~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~----------~~~h~~~V~~v~~~p  159 (434)
T 2oit_A           91 MKFPIHHLALSCDNL-TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL----------LKDAGGMVIDMKWNP  159 (434)
T ss_dssp             CSSCEEEEEECTTSC-EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC----------CCSGGGSEEEEEECS
T ss_pred             CCCcccEEEEcCCCC-EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec----------cCCCCCceEEEEECC
Confidence            567899999999999 787    8999999999999765        22212221          112577899999999


Q ss_pred             CcccCCC-CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccc
Q 025649           88 ADMLDKT-NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA  166 (250)
Q Consensus        88 ~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  166 (250)
                            + +++|++++.||+|++||++++...                                        ....+|..
T Consensus       160 ------~~~~~las~s~Dg~v~iwD~~~~~~~----------------------------------------~~~~~~~~  193 (434)
T 2oit_A          160 ------TVPSMVAVCLADGSIAVLQVTETVKV----------------------------------------CATLPSTV  193 (434)
T ss_dssp             ------SCTTEEEEEETTSCEEEEEESSSEEE----------------------------------------EEEECGGG
T ss_pred             ------CCCCEEEEEECCCeEEEEEcCCCcce----------------------------------------eeccCCCC
Confidence                  6 889999999999999999865311                                        12345788


Q ss_pred             cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE-eeCCc---
Q 025649          167 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV-CDTSK---  242 (250)
Q Consensus       167 ~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d~---  242 (250)
                      .|.+++|+   |+|++|++|+.||.|++||.+ +..........  .....|...|.+++|++ ++.++++ ++.||   
T Consensus       194 ~v~~v~ws---pdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~--~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~  266 (434)
T 2oit_A          194 AVTSVCWS---PKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPP--FYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLE  266 (434)
T ss_dssp             CEEEEEEC---TTSSCEEEEETTSCEEEECTT-CCEEEEECCCT--TCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSS
T ss_pred             ceeEEEEc---CCCCEEEEEcCCCcEEEEccC-CcccccccCCc--ccCCCCceeEEEEEEec-CceEEEEEccCCCccC
Confidence            99999999   899999999999999999998 32111000000  00012344899999997 6666544 33443   


Q ss_pred             ---eEEEEeCC
Q 025649          243 ---VVKVYSIS  250 (250)
Q Consensus       243 ---~i~vw~~~  250 (250)
                         .+++|+++
T Consensus       267 ~~~~v~i~~l~  277 (434)
T 2oit_A          267 TSPDVVMALLP  277 (434)
T ss_dssp             SCCEEEEEECC
T ss_pred             CCCceEEEEec
Confidence               38899874

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=2.7e-22  Score=156.68  Aligned_cols=180  Identities=10%  Similarity=0.040  Sum_probs=127.9

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCC--CCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE--NNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      ...++.+++++++. ++++++.|+ +++|+................  .........++..|.+++|+|      ++++|
T Consensus        36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp------dg~~l  107 (434)
T 2oit_A           36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC------DNLTL  107 (434)
T ss_dssp             CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT------TSCEE
T ss_pred             CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC------CCCEE
Confidence            44689999999998 899998887 899886432110000000000  000001112456799999999      99999


Q ss_pred             E----EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEee
Q 025649           99 V----VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS  174 (250)
Q Consensus        99 ~----~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  174 (250)
                      +    +++.|+.|++||++++....   ..                          ..+....+..+.+|...|.+++|+
T Consensus       108 av~~~sgs~d~~v~iwd~~~~~~~~---~~--------------------------~~~~~~~~~~~~~h~~~V~~v~~~  158 (434)
T 2oit_A          108 SACMMSSEYGSIIAFFDVRTFSNEA---KQ--------------------------QKRPFAYHKLLKDAGGMVIDMKWN  158 (434)
T ss_dssp             EEEEEETTTEEEEEEEEHHHHHCTT---CS--------------------------SCCCSEEEECCCSGGGSEEEEEEC
T ss_pred             EEEEeccCCCceEEEEEccccccCC---cC--------------------------CcceeeeeeccCCCCCceEEEEEC
Confidence            9    78899999999997531000   00                          000111234567899999999999


Q ss_pred             cCCCC-CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          175 MFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       175 p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                         |+ +++|++++.||+|++||++++         .......+|...|.+++|+| +|++|++|+.||.|++||++
T Consensus       159 ---p~~~~~las~s~Dg~v~iwD~~~~---------~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          159 ---PTVPSMVAVCLADGSIAVLQVTET---------VKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             ---SSCTTEEEEEETTSCEEEEEESSS---------EEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT
T ss_pred             ---CCCCCEEEEEECCCeEEEEEcCCC---------cceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC
Confidence               65 789999999999999999987         33445567889999999998 79999999999999999974

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=1.8e-20  Score=141.89  Aligned_cols=217  Identities=9%  Similarity=-0.002  Sum_probs=142.4

Q ss_pred             CcEEEEcc--cce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC---CCCccceecCCCCCCCCCCc
Q 025649            1 MWQIIDIR--QHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK---GRPNKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         1 ti~iwd~~--~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~   73 (250)
                      +|++|++.  +++  .+..+. .+. .+..++|+|+++.+++++..++.|.+||+.+   .+.+..+.            
T Consensus        61 ~v~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~------------  126 (343)
T 1ri6_A           61 RVLAYRIAPDDGALTFAAESA-LPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE------------  126 (343)
T ss_dssp             EEEEEEECTTTCCEEEEEEEE-CSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC------------
T ss_pred             eEEEEEecCCCCceeeccccc-cCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc------------
Confidence            37899987  554  445565 444 7899999999994445555689999999953   33333333            


Q ss_pred             ccCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCC-ceeEe----eccCCCCCCccceeecccceeEEEee--
Q 025649           74 CYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES-ELNIS----RSKSTTKPLKGSQSTSKVNIRDAEME--  145 (250)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--  145 (250)
                        ....+.+++|+|      +++++++++ .++.|.+||+.+ ++...    .........+..++|+|++++++..+  
T Consensus       127 --~~~~~~~~~~s~------dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~  198 (343)
T 1ri6_A          127 --GLDGCHSANISP------DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL  198 (343)
T ss_dssp             --CCTTBCCCEECT------TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             --CCCCceEEEECC------CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC
Confidence              234578899998      898888777 899999999987 54432    22333345677899999999776432  


Q ss_pred             -----eeeecc-Cee---eeeeccccCc---cccEEEEEeecCCCCCcEEE-EeeCCCeEEEEecCCCcceeccccccee
Q 025649          146 -----ILDQSG-GKR---LHLDYSVGGH---TAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINNDLL  212 (250)
Q Consensus       146 -----~~~~~~-~~~---~~~~~~~~~h---~~~v~~~~~~p~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~  212 (250)
                           .++... ...   ......+...   ...+..++|+   |+|++|+ ++..++.|.+||+......     ...+
T Consensus       199 ~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s---~dg~~l~v~~~~~~~i~v~d~~~~~~~-----~~~~  270 (343)
T 1ri6_A          199 NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT---PDGRHLYACDRTASLITVFSVSEDGSV-----LSKE  270 (343)
T ss_dssp             TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTSCC-----EEEE
T ss_pred             CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC---CCCCEEEEEecCCCEEEEEEEcCCCCc-----eEEe
Confidence                 233211 011   1122222211   3457789999   8988776 5557999999999831100     0233


Q ss_pred             eeeeccCCceeEEEecCCCCCeEEEee-CCceEEEEeC
Q 025649          213 IKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI  249 (250)
Q Consensus       213 ~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw~~  249 (250)
                      .....+.. +..++|+| ++++|++++ .++.|.+|++
T Consensus       271 ~~~~~~~~-~~~~~~s~-dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          271 GFQPTETQ-PRGFNVDH-SGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             EEEECSSS-CCCEEECT-TSSEEEEECTTTCEEEEEEE
T ss_pred             eeecCCCc-cceEEECC-CCCEEEEecCCCCeEEEEEE
Confidence            33333333 88899998 888777776 6899999954

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=4.8e-21  Score=153.52  Aligned_cols=232  Identities=16%  Similarity=0.123  Sum_probs=158.9

Q ss_pred             CcEEEEc--ccceeeeeeccCCCCCeeeEEEcC----CCCeEEEEec-CCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649            1 MWQIIDI--RQHCLYKSLRAGHSSICSSVQFIP----WKPWEVISGG-LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         1 ti~iwd~--~~~~~~~~l~~~h~~~v~~l~~~~----~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~   73 (250)
                      +|++||+  .+++.+.++.  +...+..++|+|    +|+ +|++++ .+++|.+||..+++++..+.....   .....
T Consensus       201 ~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~---~~~~~  274 (543)
T 1nir_A          201 RIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGM---TVDTQ  274 (543)
T ss_dssp             EEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEE---CSSSC
T ss_pred             eEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEeccccccceeecccCc---ccCcc
Confidence            4899999  8999999998  455679999999    999 677776 589999999999998888764210   00011


Q ss_pred             ccCCC-ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee----ee
Q 025649           74 CYNPA-FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI----LD  148 (250)
Q Consensus        74 ~~~~~-~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  148 (250)
                      .+|+. .+.++.++|     ....++++...++.|.+||+.+.+.+..........+..+.|+|+|++++..+.    ..
T Consensus       275 ~~~~~~~v~~i~~s~-----~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~  349 (543)
T 1nir_A          275 TYHPEPRVAAIIASH-----EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVA  349 (543)
T ss_dssp             CEESCCCEEEEEECS-----SSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEE
T ss_pred             ccccCCceEEEEECC-----CCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEE
Confidence            12333 688899998     234456677789999999998765433111123466888999999998764221    11


Q ss_pred             eccCeeeeeeccccC----ccccEEEEEeecCCCC-CcEEEEee-CCCeEEEEecCCCcceecccccceeeeeeccCCce
Q 025649          149 QSGGKRLHLDYSVGG----HTAAASCVAFSMFGER-GKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV  222 (250)
Q Consensus       149 ~~~~~~~~~~~~~~~----h~~~v~~~~~~p~~~~-~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  222 (250)
                      .++....+++..+..    |.+....+ ++   |+ +.+++++. .|++|.+||+.+....  ....+++..+..|...+
T Consensus       350 v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~---p~~g~~~~s~~~~d~~V~v~d~~~~~~~--~~~~~~v~~l~~~g~~~  423 (543)
T 1nir_A          350 VIDSKDRRLSALVDVGKTPHPGRGANF-VH---PKYGPVWSTSHLGDGSISLIGTDPKNHP--QYAWKKVAELQGQGGGS  423 (543)
T ss_dssp             EEETTTTEEEEEEECSSSBCCTTCEEE-EE---TTTEEEEEEEBSSSSEEEEEECCTTTCT--TTBTSEEEEEECSCSCC
T ss_pred             EEECCCCeEEEeeccCCCCCCCCCccc-CC---CCCccEEEeccCCCceEEEEEeCCCCCc--hhcCeEEEEEEcCCCCc
Confidence            122223333344432    54433333 45   55 77777775 5899999999882110  00016677888898888


Q ss_pred             eEEEecCCCCCeEEEee-------CCceEEEEeCC
Q 025649          223 NWLCTTPTESENLVVCD-------TSKVVKVYSIS  250 (250)
Q Consensus       223 ~~~~~~~~~~~~l~s~~-------~d~~i~vw~~~  250 (250)
                      ..+.++| ++++|++++       .+++|.|||+.
T Consensus       424 ~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~  457 (543)
T 1nir_A          424 LFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLK  457 (543)
T ss_dssp             CCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred             eEEEcCC-CCCcEEEecCCCCCcccCceEEEEECC
Confidence            9999998 899999987       27799999974

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=1.2e-19  Score=138.00  Aligned_cols=221  Identities=10%  Similarity=0.002  Sum_probs=153.5

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |.+||..+++.+..+. . ...+..++|+|+++.++++...++.|.+||..+++.+..+..+....    .....+..+.
T Consensus        71 v~~~d~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~  144 (353)
T 3vgz_A           71 VYRLDPVTLEVTQAIH-N-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR----TEEVRPLQPR  144 (353)
T ss_dssp             EEEECTTTCCEEEEEE-E-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC----CSSCCCCEEE
T ss_pred             EEEEcCCCCeEEEEEe-c-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc----ccccCCCCCc
Confidence            7899999999988887 3 44578999999998566677778999999999999888777541100    0011123468


Q ss_pred             EEecCCCcccCCCCCEEEEEe--CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee------eeeeccCe
Q 025649           82 AIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSGGK  153 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  153 (250)
                      +++++|      +++++++++  .++.|.+||+.+++....+... ...+..++++|+|+.++...      .++.....
T Consensus       145 ~~~~s~------dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~  217 (353)
T 3vgz_A          145 ELVADD------ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT-GKMSTGLALDSEGKRLYTTNADGELITIDTADNK  217 (353)
T ss_dssp             EEEEET------TTTEEEEEEESSSCEEEEEETTTTEEEEEECCC-CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE
T ss_pred             eEEECC------CCCEEEEEecCCCceEEEEcCCCCceEEEecCC-CCccceEEECCCCCEEEEEcCCCeEEEEECCCCe
Confidence            899998      888777776  4789999999998887766522 24578899999999887422      22222222


Q ss_pred             eeeeecc-ccCccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649          154 RLHLDYS-VGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE  231 (250)
Q Consensus       154 ~~~~~~~-~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  231 (250)
                      ....+.. ..++...+.+++|+   |+|++++.++. ++.|.+||..+++         .+.......  ...++|+| +
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~~v~~~d~~~~~---------~~~~~~~~~--~~~~~~s~-d  282 (353)
T 3vgz_A          218 ILSRKKLLDDGKEHFFINISLD---TARQRAFITDSKAAEVLVVDTRNGN---------ILAKVAAPE--SLAVLFNP-A  282 (353)
T ss_dssp             EEEEEECCCSSSCCCEEEEEEE---TTTTEEEEEESSSSEEEEEETTTCC---------EEEEEECSS--CCCEEEET-T
T ss_pred             EEEEEEcCCCCCCcccceEEEC---CCCCEEEEEeCCCCEEEEEECCCCc---------EEEEEEcCC--CceEEECC-C
Confidence            2211111 11355668889999   88887766654 5999999999873         333333222  25688997 7


Q ss_pred             CCeEEE-eeCCceEEEEeCC
Q 025649          232 SENLVV-CDTSKVVKVYSIS  250 (250)
Q Consensus       232 ~~~l~s-~~~d~~i~vw~~~  250 (250)
                      ++++++ ...++.|.+||+.
T Consensus       283 g~~l~v~~~~~~~v~~~d~~  302 (353)
T 3vgz_A          283 RNEAYVTHRQAGKVSVIDAK  302 (353)
T ss_dssp             TTEEEEEETTTTEEEEEETT
T ss_pred             CCEEEEEECCCCeEEEEECC
Confidence            775554 5579999999963

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=7.6e-20  Score=138.48  Aligned_cols=217  Identities=15%  Similarity=0.131  Sum_probs=139.5

Q ss_pred             CcEEEEcc-cc--eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC-CeEEEEEcc--CCCCc--cceecCCCCCCCCCC
Q 025649            1 MWQIIDIR-QH--CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD-SKLVMWDFS--KGRPN--KIVNFGLPENNGNAG   72 (250)
Q Consensus         1 ti~iwd~~-~~--~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d-g~v~iwd~~--~~~~~--~~~~~~~~~~~~~~~   72 (250)
                      +|++||+. ++  +.+..+  .|...+.+++|+|+++ +|++++.+ +.|++|++.  +++..  ..+..          
T Consensus        16 ~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------   82 (343)
T 1ri6_A           16 QIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDDGALTFAAESAL----------   82 (343)
T ss_dssp             EEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEEC----------
T ss_pred             eEEEEEECCCCcEEEeeeE--ecCCCCceEEECCCCC-EEEEeecCCCeEEEEEecCCCCceeecccccc----------
Confidence            47899985 33  334444  4778899999999999 67776665 999999997  44432  23331          


Q ss_pred             cccCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCC---CceeEeeccCCCCCCccceeecccceeEEEee---
Q 025649           73 QCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIE---SELNISRSKSTTKPLKGSQSTSKVNIRDAEME---  145 (250)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  145 (250)
                          ...+..++|+|      ++++|++++ .++.|.+||+.   ..........  ...+.+++|+|+|++++...   
T Consensus        83 ----~~~~~~~~~s~------dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~  150 (343)
T 1ri6_A           83 ----PGSLTHISTDH------QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG--LDGCHSANISPDNRTLWVPALKQ  150 (343)
T ss_dssp             ----SSCCSEEEECT------TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC--CTTBCCCEECTTSSEEEEEEGGG
T ss_pred             ----CCCCcEEEEcC------CCCEEEEEecCCCeEEEEECCCCccccccccccC--CCCceEEEECCCCCEEEEecCCC
Confidence                23678899998      899776665 48899999994   3333333332  25688999999998877433   


Q ss_pred             ----eeeeccCeeeeeec--cccC-ccccEEEEEeecCCCCCcEEEEe-eCCCeEEEEecCC--Ccceecccccceeeee
Q 025649          146 ----ILDQSGGKRLHLDY--SVGG-HTAAASCVAFSMFGERGKYLISG-GNDKLVKVWDCSR--FQGVQTSINNDLLIKN  215 (250)
Q Consensus       146 ----~~~~~~~~~~~~~~--~~~~-h~~~v~~~~~~p~~~~~~~l~s~-~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~  215 (250)
                          .++...........  .+.. ....+.+++|+   |++++++.+ ..++.|.+||+..  +.....    ......
T Consensus       151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~----~~~~~~  223 (343)
T 1ri6_A          151 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH---PNEQYAYCVNELNSSVDVWELKDPHGNIECV----QTLDMM  223 (343)
T ss_dssp             TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC---TTSSEEEEEETTTTEEEEEESSCTTSCCEEE----EEEECS
T ss_pred             CEEEEEEecCCCceeeecccccccCCCCCcceEEEC---CCCCEEEEEeCCCCEEEEEEecCCCCcEEEE----eecccc
Confidence                23332211111111  1222 23467889999   899876554 4789999999964  311100    111111


Q ss_pred             e-cc--CCceeEEEecCCCCCeEE-EeeCCceEEEEeCC
Q 025649          216 I-NL--NKKVNWLCTTPTESENLV-VCDTSKVVKVYSIS  250 (250)
Q Consensus       216 ~-~~--~~~v~~~~~~~~~~~~l~-s~~~d~~i~vw~~~  250 (250)
                      . ++  ...+..++|+| ++++|+ ++..++.|.+|++.
T Consensus       224 ~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          224 PENFSDTRWAADIHITP-DGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             CTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred             CccccccCCccceEECC-CCCEEEEEecCCCEEEEEEEc
Confidence            1 11  23566899998 777766 55579999999963

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=1.6e-20  Score=156.28  Aligned_cols=211  Identities=10%  Similarity=0.002  Sum_probs=147.0

Q ss_pred             CcEEEEcccceeeeeeccCCCC------------------------CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC-
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSS------------------------ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-   55 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~------------------------~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~-   55 (250)
                      +|++||+.+++....+. .+..                        .|.+++|+|||+ +|++++. +.|.+||+.++. 
T Consensus        65 ~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~-~~i~~~d~~~~~~  141 (741)
T 2ecf_A           65 DLWSYDIGSGQTRLLVD-SKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ-RLLFPLG-GELYLYDLKQEGK  141 (741)
T ss_dssp             EEEEEETTTCCEEEEEC-GGGTC--------------------CCEESCCCEECTTSS-EEEEEET-TEEEEEESSSCST
T ss_pred             EEEEEECCCCceeEccc-hhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC-EEEEEeC-CcEEEEECCCCCc
Confidence            37899999998877766 4433                        389999999999 7887776 999999998872 


Q ss_pred             -CccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCC-------
Q 025649           56 -PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP-------  127 (250)
Q Consensus        56 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-------  127 (250)
                       ....+. .            +...+..++|+|      +|++|+.++. +.|++||+.+++...........       
T Consensus       142 ~~~~~l~-~------------~~~~~~~~~~SP------DG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~  201 (741)
T 2ecf_A          142 AAVRQLT-H------------GEGFATDAKLSP------KGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAE  201 (741)
T ss_dssp             TSCCBCC-C------------SSSCEEEEEECT------TSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCC
T ss_pred             ceEEEcc-c------------CCcccccccCCC------CCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccc
Confidence             223332 1            346789999999      9999998874 68999999987765443332211       


Q ss_pred             --------CccceeecccceeEEEeeeeee-----------------------------------c--cCee-eeeeccc
Q 025649          128 --------LKGSQSTSKVNIRDAEMEILDQ-----------------------------------S--GGKR-LHLDYSV  161 (250)
Q Consensus       128 --------~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~--~~~~-~~~~~~~  161 (250)
                              .+..+.|+|||+.++... .+.                                   .  +... .+.....
T Consensus       202 ~v~~~~~~~~~~~~~SpDg~~l~~~~-~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~  280 (741)
T 2ecf_A          202 FVADEEMDRHTGYWWAPDDSAIAYAR-IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWID  280 (741)
T ss_dssp             HHHHHHSCCCCSEEECTTSSCEEEEE-EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEEC
T ss_pred             eeeeeccccccceEECCCCCEEEEEE-EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEec
Confidence                    147899999999998532 221                                   0  1111 1111111


Q ss_pred             --cCccccEEEEEeecCCCCCcEEEEeeC-----CCeEEEEecCCCcceecccccceeeeeeccCC----ceeEEEecCC
Q 025649          162 --GGHTAAASCVAFSMFGERGKYLISGGN-----DKLVKVWDCSRFQGVQTSINNDLLIKNINLNK----KVNWLCTTPT  230 (250)
Q Consensus       162 --~~h~~~v~~~~~~p~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~  230 (250)
                        ..|...+..++| |   +|++|+.++.     +..|++||+.++.         .......+..    .+..++|+| 
T Consensus       281 ~~~~~~~~~~~~~~-p---Dg~~l~~~~~~~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~~~~~~~~sp-  346 (741)
T 2ecf_A          281 LGKEQDIYLARVNW-R---DPQHLSFQRQSRDQKKLDLVEVTLASNQ---------QRVLAHETSPTWVPLHNSLRFLD-  346 (741)
T ss_dssp             CCSCSSEEEEEEEE-E---ETTEEEEEEEETTSSEEEEEEEETTTCC---------EEEEEEEECSSCCCCCSCCEECT-
T ss_pred             CCCCcceEEEEEEe-C---CCCEEEEEEecccCCeEEEEEEECCCCc---------eEEEEEcCCCCcCCcCCceEECC-
Confidence              146677888888 6   7888886653     5689999999873         3333333332    456789998 


Q ss_pred             CCCeEEEeeCCceEEEEeC
Q 025649          231 ESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       231 ~~~~l~s~~~d~~i~vw~~  249 (250)
                      ||+++++++.||.++||.+
T Consensus       347 dg~~~~~~~~~g~~~l~~~  365 (741)
T 2ecf_A          347 DGSILWSSERTGFQHLYRI  365 (741)
T ss_dssp             TSCEEEEECTTSSCEEEEE
T ss_pred             CCeEEEEecCCCccEEEEE
Confidence            8888889999998888764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=1e-20  Score=140.25  Aligned_cols=205  Identities=10%  Similarity=-0.046  Sum_probs=143.1

Q ss_pred             cEEEEccc-ceeeeeeccCC-CCCeeeEEEcCCCCeEEEEec--CCCeEEEEEc--cCCCCccceecCCCCCCCCCCccc
Q 025649            2 WQIIDIRQ-HCLYKSLRAGH-SSICSSVQFIPWKPWEVISGG--LDSKLVMWDF--SKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         2 i~iwd~~~-~~~~~~l~~~h-~~~v~~l~~~~~~~~~l~s~s--~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      |++||+.+ ++....+. +| ...+.+++|+|+++ +|++++  .++..+||.+  .+++ ...+.              
T Consensus        64 i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--------------  126 (297)
T 2ojh_A           64 LYRLSLAGDPSPEKVDT-GFATICNNDHGISPDGA-LYAISDKVEFGKSAIYLLPSTGGT-PRLMT--------------  126 (297)
T ss_dssp             EEEEESSSCCSCEECCC-TTCCCBCSCCEECTTSS-EEEEEECTTTSSCEEEEEETTCCC-CEECC--------------
T ss_pred             EEEEeCCCCCCceEecc-ccccccccceEECCCCC-EEEEEEeCCCCcceEEEEECCCCc-eEEee--------------
Confidence            78999998 88777776 55 47899999999999 788877  3455566655  4443 33333              


Q ss_pred             CCCceeEEecCCCcccCCCCCEEE-EEeCCCeEEEEeCC--CceeEeeccCCCCCCccceeecccceeEEEeeeeee---
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVINIE--SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ---  149 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~-~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  149 (250)
                      ....+..++|+|      ++++|+ ++..++.+++|+++  ++... .+ ......+.++.|+|+|+.++..+..+.   
T Consensus       127 ~~~~~~~~~~sp------dg~~l~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~  198 (297)
T 2ojh_A          127 KNLPSYWHGWSP------DGKSFTYCGIRDQVFDIYSMDIDSGVET-RL-THGEGRNDGPDYSPDGRWIYFNSSRTGQMQ  198 (297)
T ss_dssp             SSSSEEEEEECT------TSSEEEEEEEETTEEEEEEEETTTCCEE-EC-CCSSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             cCCCccceEECC------CCCEEEEEECCCCceEEEEEECCCCcce-Ec-ccCCCccccceECCCCCEEEEEecCCCCcc
Confidence            123488899998      888777 77889999999864  33332 22 223367889999999998874332111   


Q ss_pred             -ccCe-eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC-----------CeEEEEecCCCcceecccccceeeeee
Q 025649          150 -SGGK-RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-----------KLVKVWDCSRFQGVQTSINNDLLIKNI  216 (250)
Q Consensus       150 -~~~~-~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~  216 (250)
                       +... .......+..|...+.+++|+   |+|++|++++.+           +.|++||+.+++.       ..+....
T Consensus       199 i~~~~~~~~~~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-------~~~~~~~  268 (297)
T 2ojh_A          199 IWRVRVDGSSVERITDSAYGDWFPHPS---PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-------ETLFDLF  268 (297)
T ss_dssp             EEEEETTSSCEEECCCCSEEEEEEEEC---TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-------EEEEEEE
T ss_pred             EEEECCCCCCcEEEecCCcccCCeEEC---CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc-------eeeeccC
Confidence             1111 122334566777889999999   899999888765           5699999988632       2233445


Q ss_pred             ccCCceeEEEecCCCCCeEEEeeCCc
Q 025649          217 NLNKKVNWLCTTPTESENLVVCDTSK  242 (250)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~s~~~d~  242 (250)
                      +|...+..++|+| +++.|++++.+.
T Consensus       269 ~~~~~~~~~~~sp-dg~~l~~~~~~~  293 (297)
T 2ojh_A          269 GGQGTMNSPNWSP-DGDEFAYVRYFP  293 (297)
T ss_dssp             ESTTTSCSCCBCT-TSSEEEEEEECC
T ss_pred             CCCcccccceECC-CCCEEEEEEecc
Confidence            7888899999998 888888776543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=8.6e-20  Score=137.78  Aligned_cols=216  Identities=12%  Similarity=0.040  Sum_probs=145.2

Q ss_pred             CcEEEEccccee-eeeeccCCCCCeeeEEEcCCCCeEEEEecCCC---eEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            1 MWQIIDIRQHCL-YKSLRAGHSSICSSVQFIPWKPWEVISGGLDS---KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         1 ti~iwd~~~~~~-~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      +|.+||+.+++. ...+. .+..+..+++|+|+++ +|+++..++   .|.+||+.+++.+..+..+             
T Consensus        63 ~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-------------  127 (331)
T 3u4y_A           63 TLVQIETQLEPPKVVAIQ-EGQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-------------  127 (331)
T ss_dssp             EEEEEECSSSSCEEEEEE-ECSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTEEEEEEECC-------------
T ss_pred             eEEEEECCCCceeEEecc-cCCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCCeEEEEECC-------------
Confidence            378999999988 77777 6777766699999999 677655553   9999999998887777633             


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEE-eCCCe-EEEEeCCCceeEee---ccCCCCCCccceeecccceeEEEee------
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVA-KGDGV-VDVINIESELNISR---SKSTTKPLKGSQSTSKVNIRDAEME------  145 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~-~~d~~-i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------  145 (250)
                       ....+++|+|      ++++++++ ..++. |.+|++........   ...........++|+|+|++++...      
T Consensus       128 -~~~~~~~~sp------dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  200 (331)
T 3u4y_A          128 -YDAVGIAISP------NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSI  200 (331)
T ss_dssp             -TTEEEEEECT------TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             -CCccceEECC------CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeE
Confidence             4568999999      88755555 55578 99999875332211   1112235578899999998765322      


Q ss_pred             -eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCcceecccccceeeeeec----cC
Q 025649          146 -ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNIN----LN  219 (250)
Q Consensus       146 -~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~  219 (250)
                       .++.......+.+..+..+ ..+..++|+   |+|++++.++ .++.|.+||+.+++...       +.....    +.
T Consensus       201 ~v~d~~~~~~~~~~~~~~~~-~~~~~~~~s---pdg~~l~v~~~~~~~i~~~d~~~~~~~~-------~~~~~~~~~~~~  269 (331)
T 3u4y_A          201 GILETQNPENITLLNAVGTN-NLPGTIVVS---RDGSTVYVLTESTVDVFNFNQLSGTLSF-------VKSFGHGLLIDP  269 (331)
T ss_dssp             EEEECSSTTSCEEEEEEECS-SCCCCEEEC---TTSSEEEEECSSEEEEEEEETTTTEEEE-------EEEEECCCCCCC
T ss_pred             EEEECCCCcccceeeeccCC-CCCceEEEC---CCCCEEEEEEcCCCEEEEEECCCCceee-------ecccccccccCC
Confidence             2333322221114444433 556789999   8999766554 57899999999874311       111111    12


Q ss_pred             Cc---eeEEEecCCCCCeEEE-eeCCceEEEEeCC
Q 025649          220 KK---VNWLCTTPTESENLVV-CDTSKVVKVYSIS  250 (250)
Q Consensus       220 ~~---v~~~~~~~~~~~~l~s-~~~d~~i~vw~~~  250 (250)
                      ..   ...++|+| |+++|++ +..++.|.+||+.
T Consensus       270 ~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          270 RPLFGANQMALNK-TETKLFISANISRELKVFTIS  303 (331)
T ss_dssp             GGGTTCCCEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred             CCcccccceEECC-CCCEEEEecCCCCcEEEEEec
Confidence            22   35589998 8887755 5557799999974

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=6.2e-20  Score=152.36  Aligned_cols=215  Identities=10%  Similarity=-0.023  Sum_probs=145.6

Q ss_pred             CcEEEEcccceeeeeeccCCCC---CeeeEEEcCCCCeEEEEecCC---------CeEEEEEccCCCCccceecCCCCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSS---ICSSVQFIPWKPWEVISGGLD---------SKLVMWDFSKGRPNKIVNFGLPENN   68 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~---~v~~l~~~~~~~~~l~s~s~d---------g~v~iwd~~~~~~~~~~~~~~~~~~   68 (250)
                      +|++||+.+++....+. +|..   .|.+++|||||+ +|++++.+         +.+.+||+.+++. ..+...     
T Consensus        38 ~i~~~d~~~g~~~~~~~-~~~~~~~~v~~~~~SpDg~-~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-----  109 (723)
T 1xfd_A           38 TVRLWNVETNTSTVLIE-GKKIESLRAIRYEISPDRE-YALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPP-----  109 (723)
T ss_dssp             CEEEBCGGGCCCEEEEC-TTTTTTTTCSEEEECTTSS-EEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCT-----
T ss_pred             CEEEEECCCCcEEEEec-cccccccccceEEECCCCC-EEEEEecCccceeecceeeEEEEECCCCce-EeccCC-----
Confidence            58999999999888887 7765   499999999999 78888664         7889999998875 223211     


Q ss_pred             CCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCC-----------------Cccc
Q 025649           69 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP-----------------LKGS  131 (250)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------------~~~~  131 (250)
                           ..+...+..++|+|      +|+.|+.++. +.|++||+.+++...........                 .+..
T Consensus       110 -----~~~~~~~~~~~~SP------dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~  177 (723)
T 1xfd_A          110 -----EVSNAKLQYAGWGP------KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA  177 (723)
T ss_dssp             -----TCCSCCCSBCCBCS------STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred             -----ccccccccccEECC------CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence                 01233478899999      9999999876 79999999987765443332111                 2367


Q ss_pred             eeecccceeEEEeeeeee-------------------------------------ccCeeeeeeccccC------ccccE
Q 025649          132 QSTSKVNIRDAEMEILDQ-------------------------------------SGGKRLHLDYSVGG------HTAAA  168 (250)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~------h~~~v  168 (250)
                      ++|+|||+.++.....+.                                     ++....+....+..      +...+
T Consensus       178 ~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~  257 (723)
T 1xfd_A          178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI  257 (723)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred             EEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcccee
Confidence            999999999985332110                                     00111111122333      25678


Q ss_pred             EEEEeecCCCCCcEEEEeeC----CCeEEEEecCCCcceecccccceeeeee-ccCCce----eEEEecCCCCCeEEE--
Q 025649          169 SCVAFSMFGERGKYLISGGN----DKLVKVWDCSRFQGVQTSINNDLLIKNI-NLNKKV----NWLCTTPTESENLVV--  237 (250)
Q Consensus       169 ~~~~~~p~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v----~~~~~~~~~~~~l~s--  237 (250)
                      .+++|+   |+|+++++.+.    +..|++||+.+++         ...... .+...+    ..++|+| ||+.|+.  
T Consensus       258 ~~~~~S---pDg~~l~~~~~~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~  324 (723)
T 1xfd_A          258 TMVKWA---TSTKVAVTWLNRAQNVSILTLCDATTGV---------CTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIR  324 (723)
T ss_dssp             EEEEES---SSSEEEEEEEETTSCEEEEEEEETTTCC---------EEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEE
T ss_pred             EEEEEe---CCCeEEEEEEcCCCCeEEEEEEeCCCCc---------ceEEEEeccCCEEeccCCCceEcC-CCCeEEEEE
Confidence            999999   89998877643    3589999999873         222222 233333    3788998 8887664  


Q ss_pred             eeCCc------eEEEEe
Q 025649          238 CDTSK------VVKVYS  248 (250)
Q Consensus       238 ~~~d~------~i~vw~  248 (250)
                      +..++      .|.+||
T Consensus       325 ~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          325 AIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             EECCSSSSCEEEEEEEC
T ss_pred             ecccCCCcceeEEEEEe
Confidence            45677      566666

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=4.2e-20  Score=153.34  Aligned_cols=216  Identities=8%  Similarity=-0.042  Sum_probs=143.0

Q ss_pred             CcEEEEcccceeeeeeccCCCC---CeeeEEEcCCCCeEEEEecC---------CCeEEEEEccCCCCccceecCCCCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSS---ICSSVQFIPWKPWEVISGGL---------DSKLVMWDFSKGRPNKIVNFGLPENN   68 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~---~v~~l~~~~~~~~~l~s~s~---------dg~v~iwd~~~~~~~~~~~~~~~~~~   68 (250)
                      +|++||+.+++....+. +|..   .+.+++|||||+ +|++++.         ++.|++||+.+++.+.....      
T Consensus        37 ~i~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l------  108 (719)
T 1z68_A           37 NIVLYNIETGQSYTILS-NRTMKSVNASNYGLSPDRQ-FVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL------  108 (719)
T ss_dssp             CEEEEESSSCCEEEEEC-HHHHHTTTCSEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC------
T ss_pred             CEEEEEcCCCcEEEEEc-cccccccceeeEEECCCCC-eEEEEecCceeEEeecceEEEEEECCCCccccceec------
Confidence            58999999999877776 5543   489999999999 7888766         78999999998876321221      


Q ss_pred             CCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCC-----------------Cccc
Q 025649           69 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP-----------------LKGS  131 (250)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------------~~~~  131 (250)
                              ...+..++|+|      +|+.|+.+. ++.|++||+.+++...........                 ....
T Consensus       109 --------~~~~~~~~~SP------DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A          109 --------PRPIQYLCWSP------VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             --------CSSBCCEEECS------STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             --------CcccccceECC------CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence                    13578899999      999999885 789999999887765432222111                 1258


Q ss_pred             eeecccceeEEEeeeeee-------------------------------------ccCeeeeee--------ccccCccc
Q 025649          132 QSTSKVNIRDAEMEILDQ-------------------------------------SGGKRLHLD--------YSVGGHTA  166 (250)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~--------~~~~~h~~  166 (250)
                      ++|+|||+.++.....+.                                     ++....+..        ..+.+|..
T Consensus       174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  253 (719)
T 1z68_A          174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY  253 (719)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred             EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence            999999999985332210                                     011111110        12346778


Q ss_pred             cEEEEEeecCCCCCcEEEEeeCC----CeEEEEe----cCCCcceecccccceee-eeeccCCcee-----EEEecCCCC
Q 025649          167 AASCVAFSMFGERGKYLISGGND----KLVKVWD----CSRFQGVQTSINNDLLI-KNINLNKKVN-----WLCTTPTES  232 (250)
Q Consensus       167 ~v~~~~~~p~~~~~~~l~s~~~d----~~i~iwd----~~~~~~~~~~~~~~~~~-~~~~~~~~v~-----~~~~~~~~~  232 (250)
                      .+..++|+   |+++++++....    ..|.+||    ..+++..      .... ....|...+.     .+.|+| ||
T Consensus       254 ~~~~~~~S---pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~sp-dg  323 (719)
T 1z68_A          254 YFSWLTWV---TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP------KTQEHIEESRTGWAGGFFVSTPVFSY-DA  323 (719)
T ss_dssp             EEEEEEES---SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC------GGGEEEEECSSSCSSSSSCCCCEECT-TS
T ss_pred             eEEEeEEe---CCCeEEEEEeccccCeEEEEEEcccCCCCCCceE------EEEecccccCCceEccccCCccEECC-CC
Confidence            89999999   888887774422    2488899    7766322      1110 0135666665     788998 78


Q ss_pred             CeEEE--eeCCc--eEEEEeC
Q 025649          233 ENLVV--CDTSK--VVKVYSI  249 (250)
Q Consensus       233 ~~l~s--~~~d~--~i~vw~~  249 (250)
                      +.|+.  +..+|  .|.+||+
T Consensus       324 ~~l~~~~~~~~g~~~l~~~~~  344 (719)
T 1z68_A          324 ISYYKIFSDKDGYKHIHYIKD  344 (719)
T ss_dssp             SCEEEEEECTTSCEEEEEESS
T ss_pred             CeEEEEEEccCCceEEEEEEC
Confidence            75543  44555  4555554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=2e-19  Score=148.98  Aligned_cols=225  Identities=11%  Similarity=0.022  Sum_probs=146.5

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-----CCCccceecCCCCCC-CCCCcc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-----GRPNKIVNFGLPENN-GNAGQC   74 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~~~~~~~-~~~~~~   74 (250)
                      +|++||+.+++... +. .+...+.+++|+|+|+ .|+++ .|+.|++||+.+     ++.......+..... ......
T Consensus       102 ~i~~~d~~~~~~~~-l~-~~~~~~~~~~~SpdG~-~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~  177 (706)
T 2z3z_A          102 GLVGFDMLARKVTY-LF-DTNEETASLDFSPVGD-RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ  177 (706)
T ss_dssp             EEEEEETTTTEEEE-EE-CCTTCCTTCEECTTSS-EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred             EEEEEECCCCceEE-cc-CCcccccCCcCCCCCC-EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence            47899999887754 44 5778899999999999 77774 679999999998     766544332200000 000000


Q ss_pred             cCCCceeEEecCCCcccCCCCCEEEEEe---------------------------------CCCeEEEEeCCCceeEeec
Q 025649           75 YNPAFVHAIAIPDADMLDKTNKICVVAK---------------------------------GDGVVDVINIESELNISRS  121 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~---------------------------------~d~~i~~~d~~~~~~~~~~  121 (250)
                      -+...+.++.|+|      ++++|++++                                 .+..|.+||+.+++.....
T Consensus       178 ee~~~~~~~~~Sp------Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~  251 (706)
T 2z3z_A          178 REFGIEKGTFWSP------KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ  251 (706)
T ss_dssp             GCTTCCCSEEECT------TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred             hhcCCCceEEECC------CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence            0112358899999      999999987                                 4578999999988765443


Q ss_pred             cC-CCCCCccceeecccceeEEEeee-----------eeeccCeeeeeeccccCcc---ccEEEEEeecCCC--CCcEEE
Q 025649          122 KS-TTKPLKGSQSTSKVNIRDAEMEI-----------LDQSGGKRLHLDYSVGGHT---AAASCVAFSMFGE--RGKYLI  184 (250)
Q Consensus       122 ~~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~--~~~~l~  184 (250)
                      .. .....+..++|+|||+.++....           ++.........+.. ..+.   ..+.+++|+   |  +|++++
T Consensus       252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~~s---p~~dg~~l~  327 (706)
T 2z3z_A          252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV-ETDKHYVEPLHPLTFL---PGSNNQFIW  327 (706)
T ss_dssp             CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE-EECSSCCCCCSCCEEC---TTCSSEEEE
T ss_pred             cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE-ccCCCeECccCCceee---cCCCCEEEE
Confidence            22 33456889999999998874221           11111111111111 1111   123567899   8  999999


Q ss_pred             EeeCCCeEEEEecC-CCcceecccccceeeeeeccCCceeE-EEecCCCCCeEEE-eeCCc----eEEEEeC
Q 025649          185 SGGNDKLVKVWDCS-RFQGVQTSINNDLLIKNINLNKKVNW-LCTTPTESENLVV-CDTSK----VVKVYSI  249 (250)
Q Consensus       185 s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s-~~~d~----~i~vw~~  249 (250)
                      +++.|+.++||++. .+         ..+..+..+...+.. ++|+| +++.|+. ++.++    .|..||+
T Consensus       328 ~~~~~g~~~l~~~~~~~---------~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~  389 (706)
T 2z3z_A          328 QSRRDGWNHLYLYDTTG---------RLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDI  389 (706)
T ss_dssp             EECTTSSCEEEEEETTS---------CEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEET
T ss_pred             EEccCCccEEEEEECCC---------CEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEc
Confidence            99999999999876 33         334455667777776 78987 7776655 44444    5666664

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.84  E-value=1.6e-19  Score=150.28  Aligned_cols=221  Identities=10%  Similarity=-0.008  Sum_probs=147.0

Q ss_pred             CcEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC--
Q 025649            1 MWQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN--   76 (250)
Q Consensus         1 ti~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--   76 (250)
                      +|++||+.+++  ....+. .|...+..++|+|||+ .|+.++ ++.|.+||+.+++.......+.     .......  
T Consensus       130 ~i~~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPDG~-~la~~~-~~~i~~~d~~~g~~~~~~~~~~-----~~~~~g~~~  201 (741)
T 2ecf_A          130 ELYLYDLKQEGKAAVRQLT-HGEGFATDAKLSPKGG-FVSFIR-GRNLWVIDLASGRQMQLTADGS-----TTIGNGIAE  201 (741)
T ss_dssp             EEEEEESSSCSTTSCCBCC-CSSSCEEEEEECTTSS-EEEEEE-TTEEEEEETTTTEEEECCCCCC-----SSEEESCCC
T ss_pred             cEEEEECCCCCcceEEEcc-cCCcccccccCCCCCC-EEEEEe-CCcEEEEecCCCCEEEeccCCc-----cceeccccc
Confidence            47899998883  445677 7888999999999999 788877 4699999998876544333110     0000000  


Q ss_pred             ------CCceeEEecCCCcccCCCCCEEEEEeCCC---------------------------------eEEEEeCCC-ce
Q 025649           77 ------PAFVHAIAIPDADMLDKTNKICVVAKGDG---------------------------------VVDVINIES-EL  116 (250)
Q Consensus        77 ------~~~v~~~~~~~~~~~~~~~~~l~~~~~d~---------------------------------~i~~~d~~~-~~  116 (250)
                            ...+.+++|+|      +|++|++++.|+                                 .|.+||+.+ ++
T Consensus       202 ~v~~~~~~~~~~~~~Sp------Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~  275 (741)
T 2ecf_A          202 FVADEEMDRHTGYWWAP------DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ  275 (741)
T ss_dssp             HHHHHHSCCCCSEEECT------TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC
T ss_pred             eeeeeccccccceEECC------CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc
Confidence                  01247799999      999999987765                                 889999988 76


Q ss_pred             eEeeccC-CCCCCccceeecccceeEEEeeee------ee--ccCeeeeeeccccCccc----cEEEEEeecCCCCCcEE
Q 025649          117 NISRSKS-TTKPLKGSQSTSKVNIRDAEMEIL------DQ--SGGKRLHLDYSVGGHTA----AASCVAFSMFGERGKYL  183 (250)
Q Consensus       117 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~h~~----~v~~~~~~p~~~~~~~l  183 (250)
                      ....... .....+..++| |||+.++.....      ..  ++....+....+..+..    .+..++|+   |+|+++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s---pdg~~~  351 (741)
T 2ecf_A          276 TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL---DDGSIL  351 (741)
T ss_dssp             CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC---TTSCEE
T ss_pred             eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC---CCCeEE
Confidence            5543322 23467889999 999998843221      11  11111122222222222    34578999   899999


Q ss_pred             EEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE-EecCCCCCeEE-EeeCCc--eEEEEeC
Q 025649          184 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL-CTTPTESENLV-VCDTSK--VVKVYSI  249 (250)
Q Consensus       184 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~-s~~~d~--~i~vw~~  249 (250)
                      ++++.||.++||.+....        . ...+..|...+..+ .|+| +++.|+ +++.++  .++||++
T Consensus       352 ~~~~~~g~~~l~~~~~~~--------~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~  411 (741)
T 2ecf_A          352 WSSERTGFQHLYRIDSKG--------K-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAV  411 (741)
T ss_dssp             EEECTTSSCEEEEECSSS--------C-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEE
T ss_pred             EEecCCCccEEEEEcCCC--------C-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEE
Confidence            999999988888776321        3 44556677778777 4887 777665 555555  8899975

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=4.2e-18  Score=129.42  Aligned_cols=218  Identities=10%  Similarity=0.049  Sum_probs=135.3

Q ss_pred             cEEEE--cccceeee-eeccCCCCCeeeEEEcCCCCeEEEEec--CCCeEEEEEccCCCC--ccceecCCCCCCCCCCcc
Q 025649            2 WQIID--IRQHCLYK-SLRAGHSSICSSVQFIPWKPWEVISGG--LDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQC   74 (250)
Q Consensus         2 i~iwd--~~~~~~~~-~l~~~h~~~v~~l~~~~~~~~~l~s~s--~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~   74 (250)
                      |.+|+  .++++... ... .+...+..++|+|+|+ +++++.  .++.|.+||+.+++.  +..+..            
T Consensus        18 i~v~~~d~~tg~~~~~~~~-~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~------------   83 (347)
T 3hfq_A           18 IYQGTLDTTAKTLTNDGLL-AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA------------   83 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEE-EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE------------
T ss_pred             EEEEEEcCCCCeEEEeeee-eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec------------
Confidence            44554  45666543 233 4667788999999998 666554  378999999976653  222211            


Q ss_pred             cCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCC-ce--eEeeccCC--------CCCCccceeecccceeEE
Q 025649           75 YNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES-EL--NISRSKST--------TKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~-~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~  142 (250)
                       +...+..++|+|      ++++|++++ .++.|.+||+.. +.  ........        ....+.+++|+|+|+.++
T Consensus        84 -~~~~p~~~a~sp------dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v  156 (347)
T 3hfq_A           84 -PGTPPAYVAVDE------ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAV  156 (347)
T ss_dssp             -ESCCCSEEEEET------TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEE
T ss_pred             -CCCCCEEEEECC------CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEE
Confidence             235678899998      999888887 789999999963 22  22222211        112467799999999444


Q ss_pred             E------eeeeeeccCeeeeeeccccCc-cccEEEEEeecCCCCCcEEEE-eeCCCeEEEEecCCCcceecccccceeee
Q 025649          143 E------MEILDQSGGKRLHLDYSVGGH-TAAASCVAFSMFGERGKYLIS-GGNDKLVKVWDCSRFQGVQTSINNDLLIK  214 (250)
Q Consensus       143 ~------~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  214 (250)
                      +      +..++............+..+ ...+..++|+   |+|+++++ +..++.|.+|++.......     ..+..
T Consensus       157 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s---pdg~~l~v~~~~~~~v~v~~~~~~~g~~-----~~~~~  228 (347)
T 3hfq_A          157 IDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS---PDGQYAFLAGELSSQIASLKYDTQTGAF-----TQLGI  228 (347)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC---TTSSEEEEEETTTTEEEEEEEETTTTEE-----EEEEE
T ss_pred             EeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC---CCCCEEEEEeCCCCEEEEEEecCCCCce-----EEeee
Confidence            2      222333311111222222222 2357789999   89996655 5668899999987521110     11112


Q ss_pred             eeccC------CceeEEEecCCCCCeE-EEeeCCceEEEEeC
Q 025649          215 NINLN------KKVNWLCTTPTESENL-VVCDTSKVVKVYSI  249 (250)
Q Consensus       215 ~~~~~------~~v~~~~~~~~~~~~l-~s~~~d~~i~vw~~  249 (250)
                      .....      ..+..++|+| ||++| ++...++.|.+|++
T Consensus       229 ~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v~~~  269 (347)
T 3hfq_A          229 VKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAVFAV  269 (347)
T ss_dssp             EESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEEEEE
T ss_pred             eeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEEEEE
Confidence            22221      4588899998 88877 45667899999996

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.83  E-value=2.1e-18  Score=142.86  Aligned_cols=215  Identities=12%  Similarity=-0.001  Sum_probs=144.3

Q ss_pred             CcEEEEccc-----ceeeeeeccCCCCC--------------eeeEEEcCCCCeEEEEec--------------------
Q 025649            1 MWQIIDIRQ-----HCLYKSLRAGHSSI--------------CSSVQFIPWKPWEVISGG--------------------   41 (250)
Q Consensus         1 ti~iwd~~~-----~~~~~~l~~~h~~~--------------v~~l~~~~~~~~~l~s~s--------------------   41 (250)
                      +|++||+.+     ++...... .+...              +.+++|+|||+ +|++++                    
T Consensus       142 ~i~v~~~~~~~~~~g~~~~~~~-~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~  219 (706)
T 2z3z_A          142 NLYIARGGKLGEGMSRAIAVTI-DGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAE  219 (706)
T ss_dssp             EEEEEECBCTTSCCCCCEESCS-CCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCE
T ss_pred             eEEEEecCcccccCCCcEEecc-CCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCc
Confidence            378999998     87766555 44443              48999999999 788876                    


Q ss_pred             -------------CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC---
Q 025649           42 -------------LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---  105 (250)
Q Consensus        42 -------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~---  105 (250)
                                   .+..|.+||+.+++........           .+...+.+++|+|      +++.|++++.++   
T Consensus       220 ~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~~sp------dg~~l~~~~~~~~~~  282 (706)
T 2z3z_A          220 SKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE-----------PKEKFLTNLSWSP------DENILYVAEVNRAQN  282 (706)
T ss_dssp             EEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS-----------CTTCEEEEEEECT------TSSEEEEEEECTTSC
T ss_pred             eEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC-----------CCceeEeeEEEEC------CCCEEEEEEeCCCCC
Confidence                         4578999999887654332210           1346789999999      999999987765   


Q ss_pred             --eEEEEeCCCc-eeEeeccCCCC---CCccceeecc--cceeEEEeeeeee----ccCe-eeeeeccccCccccEEE-E
Q 025649          106 --VVDVINIESE-LNISRSKSTTK---PLKGSQSTSK--VNIRDAEMEILDQ----SGGK-RLHLDYSVGGHTAAASC-V  171 (250)
Q Consensus       106 --~i~~~d~~~~-~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~----~~~~-~~~~~~~~~~h~~~v~~-~  171 (250)
                        .|.+||+.++ ...........   ..+..+.|+|  +|+++++ +..+.    +... ....+..+..|...+.. +
T Consensus       283 ~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~-~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~  361 (706)
T 2z3z_A          283 ECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ-SRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFA  361 (706)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE-ECTTSSCEEEEEETTSCEEEECCCSSSCEEEEE
T ss_pred             eeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEE-EccCCccEEEEEECCCCEEEecCCCCeEEEeee
Confidence              9999999998 33322221111   2346789999  9997763 22221    1111 12234456667777776 7


Q ss_pred             EeecCCCCCcEEEEee-CCC----eEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC----c
Q 025649          172 AFSMFGERGKYLISGG-NDK----LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS----K  242 (250)
Q Consensus       172 ~~~p~~~~~~~l~s~~-~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~  242 (250)
                      +|+   |+|+.|+.++ .++    .|..||+.++.         .  ....|...+..++|+| |+++++..+.+    +
T Consensus       362 ~~s---pdg~~l~~~~~~~~~~~~~l~~~d~~~~~---------~--~~l~~~~~~~~~~~sp-dg~~l~~~~~~~~~p~  426 (706)
T 2z3z_A          362 GFD---PKGTRLYFESTEASPLERHFYCIDIKGGK---------T--KDLTPESGMHRTQLSP-DGSAIIDIFQSPTVPR  426 (706)
T ss_dssp             EEC---TTSSEEEEEESSSCTTCBEEEEEETTCCC---------C--EESCCSSSEEEEEECT-TSSEEEEEEECSSCSC
T ss_pred             EEc---CCCCEEEEEecCCCCceEEEEEEEcCCCC---------c--eeccCCCceEEEEECC-CCCEEEEEecCCCCCc
Confidence            999   8888776554 444    67777777652         1  1223667788999998 88887765433    5


Q ss_pred             eEEEEeCC
Q 025649          243 VVKVYSIS  250 (250)
Q Consensus       243 ~i~vw~~~  250 (250)
                      .|++||+.
T Consensus       427 ~i~l~d~~  434 (706)
T 2z3z_A          427 KVTVTNIG  434 (706)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEECC
Confidence            69999863

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.83  E-value=2.9e-18  Score=130.41  Aligned_cols=197  Identities=10%  Similarity=0.019  Sum_probs=141.4

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecC-------CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649           20 HSSICSSVQFIPWKPWEVISGGL-------DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD   92 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   92 (250)
                      ....+..++|+|+++ .+++++.       ++.|.+||..+++.+..+..+              ..+..++++|     
T Consensus        39 ~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--------------~~~~~~~~s~-----   98 (353)
T 3vgz_A           39 VGKGAYEMAYSQQEN-ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND--------------LKPFGATINN-----   98 (353)
T ss_dssp             EESSEEEEEEETTTT-EEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES--------------SCCCSEEEET-----
T ss_pred             hccCccceEECCCCC-EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC--------------CCcceEEECC-----
Confidence            345688999999998 5555543       678999999999888887744              3467889998     


Q ss_pred             CCCCEEE-EEeCCCeEEEEeCCCceeEeeccCCCCC--------CccceeecccceeEEEeee-----eeeccCeeeeee
Q 025649           93 KTNKICV-VAKGDGVVDVINIESELNISRSKSTTKP--------LKGSQSTSKVNIRDAEMEI-----LDQSGGKRLHLD  158 (250)
Q Consensus        93 ~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  158 (250)
                       ++++++ +...++.|.+||+.+++....+......        ....+.++|+|+.++....     ....+....+.+
T Consensus        99 -dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~  177 (353)
T 3vgz_A           99 -TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK  177 (353)
T ss_dssp             -TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred             -CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence             888554 5556899999999998877665553222        2677999999988774331     111222333444


Q ss_pred             ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee----ccCCceeEEEecCCCCCe
Q 025649          159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI----NLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~  234 (250)
                      ..+..+...+.+++|+   |+|+++++++.++.|.+||+.+++         ......    ++...+..++|+| +++.
T Consensus       178 ~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~i~~~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~s~-dg~~  244 (353)
T 3vgz_A          178 TAIQNTGKMSTGLALD---SEGKRLYTTNADGELITIDTADNK---------ILSRKKLLDDGKEHFFINISLDT-ARQR  244 (353)
T ss_dssp             EEECCCCTTCCCCEEE---TTTTEEEEECTTSEEEEEETTTTE---------EEEEEECCCSSSCCCEEEEEEET-TTTE
T ss_pred             EEecCCCCccceEEEC---CCCCEEEEEcCCCeEEEEECCCCe---------EEEEEEcCCCCCCcccceEEECC-CCCE
Confidence            4555455567889999   899999999999999999999874         322222    2455678899998 7776


Q ss_pred             EEEee-CCceEEEEeCC
Q 025649          235 LVVCD-TSKVVKVYSIS  250 (250)
Q Consensus       235 l~s~~-~d~~i~vw~~~  250 (250)
                      +++++ .++.|.+||+.
T Consensus       245 l~~~~~~~~~v~~~d~~  261 (353)
T 3vgz_A          245 AFITDSKAAEVLVVDTR  261 (353)
T ss_dssp             EEEEESSSSEEEEEETT
T ss_pred             EEEEeCCCCEEEEEECC
Confidence            66555 55999999963

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=1.5e-18  Score=140.71  Aligned_cols=205  Identities=7%  Similarity=-0.097  Sum_probs=139.0

Q ss_pred             CcEEEEcccceeeeeeccCCC-CCeeeEEEcCCCCeEEEEecC---CCeEEEEEccC--CCCccceecCCCCCCCCCCcc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHS-SICSSVQFIPWKPWEVISGGL---DSKLVMWDFSK--GRPNKIVNFGLPENNGNAGQC   74 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~-~~v~~l~~~~~~~~~l~s~s~---dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~   74 (250)
                      +++||++.+++.. .+. .|. ..+..++|+|+ + ++++++.   +...++|.+..  ......+..            
T Consensus        45 ~~~lw~~~~g~~~-~lt-~~~~~~~~~~~~spd-~-~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~------------  108 (582)
T 3o4h_A           45 SVNAYLYDGGETV-KLN-REPINSVLDPHYGVG-R-VILVRDVSKGAEQHALFKVNTSRPGEEQRLEA------------  108 (582)
T ss_dssp             EEEEEEEETTEEE-ECC-SSCCSEECEECTTCS-E-EEEEEECSTTSCCEEEEEEETTSTTCCEECTT------------
T ss_pred             ceeEEEEcCCCcE-eee-cccccccccccCCCC-e-EEEEeccCCCCcceEEEEEeccCCCccccccC------------
Confidence            4689999776664 454 454 68999999999 5 7877765   55667766543  221122221            


Q ss_pred             cCCCceeEEecCCCcccCCCCC--EEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeee-----
Q 025649           75 YNPAFVHAIAIPDADMLDKTNK--ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL-----  147 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  147 (250)
                        .......+|+|      +++  .++++.. +.+.+||+.+++.........    .+++|+|||+.++.....     
T Consensus       109 --~~~~~~~~~s~------dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~~~~----~~~~~spDG~~la~~~~~~~~~~  175 (582)
T 3o4h_A          109 --VKPMRILSGVD------TGEAVVFTGATE-DRVALYALDGGGLRELARLPG----FGFVSDIRGDLIAGLGFFGGGRV  175 (582)
T ss_dssp             --SCSBEEEEEEE------CSSCEEEEEECS-SCEEEEEEETTEEEEEEEESS----CEEEEEEETTEEEEEEEEETTEE
T ss_pred             --CCCceeeeeCC------CCCeEEEEecCC-CCceEEEccCCcEEEeecCCC----ceEEECCCCCEEEEEEEcCCCCe
Confidence              12234557776      554  4444444 455599999887654443321    789999999999843221     


Q ss_pred             eec--cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC--eEEEEecCCCcceecccccceeeeeeccCCcee
Q 025649          148 DQS--GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK--LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN  223 (250)
Q Consensus       148 ~~~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (250)
                      ...  +....+ ...+..|...+..++|+   |+|++|+++..++  .|++||+.++         +.. ....|...+.
T Consensus       176 ~i~~~d~~~g~-~~~l~~~~~~~~~~~~S---pDG~~l~~~~~~~~~~i~~~d~~~~---------~~~-~~~~~~~~~~  241 (582)
T 3o4h_A          176 SLFTSNLSSGG-LRVFDSGEGSFSSASIS---PGMKVTAGLETAREARLVTVDPRDG---------SVE-DLELPSKDFS  241 (582)
T ss_dssp             EEEEEETTTCC-CEEECCSSCEEEEEEEC---TTSCEEEEEECSSCEEEEEECTTTC---------CEE-ECCCSCSHHH
T ss_pred             EEEEEcCCCCC-ceEeecCCCccccceEC---CCCCEEEEccCCCeeEEEEEcCCCC---------cEE-EccCCCcChh
Confidence            111  111111 23566788889999999   8999999888888  8999999987         333 5556766676


Q ss_pred             EEE--------ecCCCCCeEEEeeCCceEEEEeC
Q 025649          224 WLC--------TTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       224 ~~~--------~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .++        |+| ||.++++++.|+.+++|++
T Consensus       242 ~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          242 SYRPTAITWLGYLP-DGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             HHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET
T ss_pred             hhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE
Confidence            666        998 7888899999999999985

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=1.5e-16  Score=121.45  Aligned_cols=226  Identities=10%  Similarity=0.074  Sum_probs=138.4

Q ss_pred             cEEEEccc--cee--eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec--CCCCCCCCCCccc
Q 025649            2 WQIIDIRQ--HCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF--GLPENNGNAGQCY   75 (250)
Q Consensus         2 i~iwd~~~--~~~--~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~   75 (250)
                      |.+|++..  ++.  +..+. .+......+++  +++.++++...++.|.+|++.....+..+..  .... ........
T Consensus        77 v~~~~~~~~~g~~~~~~~~~-~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-~~~~~~~~  152 (361)
T 3scy_A           77 VSAFAFDKEKGTLHLLNTQK-TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKG-SGPDKERQ  152 (361)
T ss_dssp             EEEEEEETTTTEEEEEEEEE-CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCC-CCSCTTTC
T ss_pred             EEEEEEeCCCCcEEEeeEec-cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccC-CCCCcccc
Confidence            67788764  443  33444 45566778888  7773445555789999999975443322210  0000 00000011


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCcee------E------eeccCCCCCCccceeecccceeEE
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELN------I------SRSKSTTKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~~~  142 (250)
                      +...+++++|+|      +++++++++ .++.|.+|++.....      +      .............++|+|+|++++
T Consensus       153 ~~~~~~~~~~sp------dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  226 (361)
T 3scy_A          153 TMPHLHCVRITP------DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAY  226 (361)
T ss_dssp             SSCCEEEEEECT------TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred             CCCcceEEEECC------CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEE
Confidence            233568899999      998665554 589999998875331      1      122333345678899999999876


Q ss_pred             Eee-------eeeeccCe--eeeeeccccCccccEEEEEeecCCCCCcEEEEeeC--CCeEEEEecC--CCcceeccccc
Q 025649          143 EME-------ILDQSGGK--RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN--DKLVKVWDCS--RFQGVQTSINN  209 (250)
Q Consensus       143 ~~~-------~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~--d~~i~iwd~~--~~~~~~~~~~~  209 (250)
                      ...       .++.....  ....+.....+......++|+   |+|++|+++..  ++.|.+|++.  ++..       
T Consensus       227 v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s---pdg~~l~v~~~~~~~~i~v~~~~~~~g~~-------  296 (361)
T 3scy_A          227 LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS---PDGKYLYASNRLKADGVAIFKVDETNGTL-------  296 (361)
T ss_dssp             EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC---TTSSEEEEEECSSSCEEEEEEECTTTCCE-------
T ss_pred             EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC---CCCCEEEEECCCCCCEEEEEEEcCCCCcE-------
Confidence            432       23322211  111222334444567899999   89998876655  4899999996  3311       


Q ss_pred             ceeeeeeccCCceeEEEecCCCCCeEEEee-CCceEEEEeC
Q 025649          210 DLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI  249 (250)
Q Consensus       210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw~~  249 (250)
                      ..+..... ...+..++|+| +|++|++++ .++.|.+|++
T Consensus       297 ~~~~~~~~-g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          297 TKVGYQLT-GIHPRNFIITP-NGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             EEEEEEEC-SSCCCEEEECT-TSCEEEEEETTTTEEEEEEE
T ss_pred             EEeeEecC-CCCCceEEECC-CCCEEEEEECCCCCEEEEEE
Confidence            22223333 55688999998 888888776 6789999764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.81  E-value=6.2e-19  Score=146.37  Aligned_cols=197  Identities=6%  Similarity=-0.056  Sum_probs=134.2

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      ..+.+++|+|+|+ ++++ +.||+|++||+.+++....+..+.          .....+.+++|+|      +|++|+++
T Consensus        17 ~~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~~~~~~----------~~~~~v~~~~~Sp------Dg~~l~~~   78 (723)
T 1xfd_A           17 IHDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVLIEGKK----------IESLRAIRYEISP------DREYALFS   78 (723)
T ss_dssp             CCCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEEECTTT----------TTTTTCSEEEECT------TSSEEEEE
T ss_pred             ccccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEEecccc----------ccccccceEEECC------CCCEEEEE
Confidence            3477899999999 6766 789999999999998766664220          0011488999999      99999999


Q ss_pred             eCC---------CeEEEEeCCCceeEeecc-CCCCCCccceeecccceeEEEeeeeeec--cCeeeeeeccccCccc---
Q 025649          102 KGD---------GVVDVINIESELNISRSK-STTKPLKGSQSTSKVNIRDAEMEILDQS--GGKRLHLDYSVGGHTA---  166 (250)
Q Consensus       102 ~~d---------~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~---  166 (250)
                      +.+         +.+.+||+.+++...... ......+..++|+|||+.++.....+..  +....+.......+..   
T Consensus        79 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~  158 (723)
T 1xfd_A           79 YNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVI  158 (723)
T ss_dssp             ESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTE
T ss_pred             ecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCce
Confidence            764         788899999887522211 1222347889999999999854321111  1111112222222222   


Q ss_pred             ---------------cEEEEEeecCCCCCcEEEEeeCCC----------------------------------eEEEEec
Q 025649          167 ---------------AASCVAFSMFGERGKYLISGGNDK----------------------------------LVKVWDC  197 (250)
Q Consensus       167 ---------------~v~~~~~~p~~~~~~~l~s~~~d~----------------------------------~i~iwd~  197 (250)
                                     .+.+++|+   |+|++|++++.|+                                  .|++||+
T Consensus       159 ~~g~~~~v~~ee~~~~~~~~~~S---pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~  235 (723)
T 1xfd_A          159 YNGLSDWLYEEEILKTHIAHWWS---PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL  235 (723)
T ss_dssp             EEEECCHHHHHTTSSSSEEEEEC---TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred             ECcccceeEEEEeccCcceEEEC---CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence                           23789999   8999999987553                                  7999999


Q ss_pred             CCCcceecccccceeeeeec------cCCceeEEEecCCCCCeEEEee----CCceEEEEeC
Q 025649          198 SRFQGVQTSINNDLLIKNIN------LNKKVNWLCTTPTESENLVVCD----TSKVVKVYSI  249 (250)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~----~d~~i~vw~~  249 (250)
                      .++...         ..+..      +...+..++|+| ||+++++.+    .+..|++||+
T Consensus       236 ~~~~~~---------~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~  287 (723)
T 1xfd_A          236 NGPTHD---------LEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDA  287 (723)
T ss_dssp             SSSCCC---------EECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEET
T ss_pred             CCCcee---------EEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeC
Confidence            887421         22222      356789999998 898886654    3467999986

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.81  E-value=4.6e-18  Score=146.37  Aligned_cols=220  Identities=5%  Similarity=-0.003  Sum_probs=152.7

Q ss_pred             CcEEEEccc-ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~-~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +++||.+.. +.....+. .|. .+...+|+|+|+ .|+.+ .++.|.+||+.. ..+..+..+  ..........+...
T Consensus       225 ~~~l~~~~~~g~~~~~l~-~~~-~~~~~~~SpDG~-~la~~-~~~~i~~~d~~~-~~l~~l~~~--~~~~~~~~~~~~~~  297 (1045)
T 1k32_A          225 FGQIYSTDLDGKDLRKHT-SFT-DYYPRHLNTDGR-RILFS-KGGSIYIFNPDT-EKIEKIEIG--DLESPEDRIISIPS  297 (1045)
T ss_dssp             SCEEEEEETTSCSCEECC-CCC-SSCEEEEEESSS-CEEEE-ETTEEEEECTTT-CCEEECCCC--CCCBCCSEEEECGG
T ss_pred             ceEEEEEeCCCCcceEec-CCC-CcceeeEcCCCC-EEEEE-eCCEEEEecCCc-eEeeeeccC--cccccccccccccc
Confidence            357887653 44556666 555 467889999999 67776 489999999943 333333211  00001111123446


Q ss_pred             eeEEecC-CCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee----eeeeccCee
Q 025649           80 VHAIAIP-DADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME----ILDQSGGKR  154 (250)
Q Consensus        80 v~~~~~~-~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  154 (250)
                      +.+++|+ |      ++++|++++ ++.|.+|++..+.... ........+..++|+ +|+.++...    .++......
T Consensus       298 v~~~~~S~p------dG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~  368 (1045)
T 1k32_A          298 KFAEDFSPL------DGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT  368 (1045)
T ss_dssp             GGEEEEEEC------GGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT
T ss_pred             cceeeecCC------CCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC
Confidence            8899999 9      999998887 7899999998876543 222222278889999 999888532    221222111


Q ss_pred             eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649          155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  234 (250)
                      .+ ...+.+|...+..++|+   |+|++|++++.++.|++||+.++         +......+|...+..++|+| ||++
T Consensus       369 ~~-~~~l~~~~~~~~~~~~S---pDG~~la~~~~~~~v~~~d~~tg---------~~~~~~~~~~~~v~~~~~Sp-DG~~  434 (1045)
T 1k32_A          369 GK-AEKFEENLGNVFAMGVD---RNGKFAVVANDRFEIMTVDLETG---------KPTVIERSREAMITDFTISD-NSRF  434 (1045)
T ss_dssp             CC-EEECCCCCCSEEEEEEC---TTSSEEEEEETTSEEEEEETTTC---------CEEEEEECSSSCCCCEEECT-TSCE
T ss_pred             CC-ceEecCCccceeeeEEC---CCCCEEEEECCCCeEEEEECCCC---------ceEEeccCCCCCccceEECC-CCCe
Confidence            11 12334777889999999   89999999999999999999987         44444557888899999998 8998


Q ss_pred             EEEeeCC----------ceEEEEeCC
Q 025649          235 LVVCDTS----------KVVKVYSIS  250 (250)
Q Consensus       235 l~s~~~d----------~~i~vw~~~  250 (250)
                      |++++.+          +.|++||+.
T Consensus       435 la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          435 IAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             EEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             EEEEecCccccccCCCCCeEEEEECC
Confidence            8887654          489999973

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=6.9e-18  Score=129.20  Aligned_cols=225  Identities=9%  Similarity=-0.031  Sum_probs=141.7

Q ss_pred             CcEEEEcc-cceeeeeeccCCCCCeeeEEEcCCCCe-EEEEec-------------CCCeEEEEEcc-CCCCccceecCC
Q 025649            1 MWQIIDIR-QHCLYKSLRAGHSSICSSVQFIPWKPW-EVISGG-------------LDSKLVMWDFS-KGRPNKIVNFGL   64 (250)
Q Consensus         1 ti~iwd~~-~~~~~~~l~~~h~~~v~~l~~~~~~~~-~l~s~s-------------~dg~v~iwd~~-~~~~~~~~~~~~   64 (250)
                      +|.+||+. ++++.........+.+.+++|+|+|+. ++++++             .+|++.+|++. +++....+..-.
T Consensus        61 ~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~  140 (365)
T 1jof_A           61 KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE  140 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE
T ss_pred             eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE
Confidence            47899997 777654433011134667999999983 244554             68999999997 455443332100


Q ss_pred             CCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCC-CceeEe--eccCC-CCCCccceeecccce
Q 025649           65 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIE-SELNIS--RSKST-TKPLKGSQSTSKVNI  139 (250)
Q Consensus        65 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~-~~~~~~--~~~~~-~~~~~~~~~~~~~~~  139 (250)
                               ..+...+++++|+|      ++++++++. .++.|++||+. +++...  ..... ....+..++|+|+|+
T Consensus       141 ---------~~~~~~~~~~~~sp------dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~  205 (365)
T 1jof_A          141 ---------YQENTGIHGMVFDP------TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGN  205 (365)
T ss_dssp             ---------CCTTCCEEEEEECT------TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSS
T ss_pred             ---------eCCCCcceEEEECC------CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCC
Confidence                     00235689999999      999888765 46899999998 665432  22222 245688899999999


Q ss_pred             eEEEee-------eeeec--cCee---eeeecccc----Cccc------cEEEEE-eecCCCCCcEEEEeeCC-C-----
Q 025649          140 RDAEME-------ILDQS--GGKR---LHLDYSVG----GHTA------AASCVA-FSMFGERGKYLISGGND-K-----  190 (250)
Q Consensus       140 ~~~~~~-------~~~~~--~~~~---~~~~~~~~----~h~~------~v~~~~-~~p~~~~~~~l~s~~~d-~-----  190 (250)
                      +++...       .++..  ....   .+.+..+.    +|..      .+..++ |+   |+|++|++++.+ +     
T Consensus       206 ~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s---pdG~~l~v~~~~~~~~~~~  282 (365)
T 1jof_A          206 YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT---FSGKYMFASSRANKFELQG  282 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC---TTSSEEEEEEEESSTTSCC
T ss_pred             EEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC---CCCCEEEEECCCCCCCCCC
Confidence            887432       12111  1111   11122232    2332      588999 99   899988776543 2     


Q ss_pred             eEEEEecC-CCcceecccccceeeeeeccCCceeEEEecCC--CCCeEEEeeC-CceEEEEeC
Q 025649          191 LVKVWDCS-RFQGVQTSINNDLLIKNINLNKKVNWLCTTPT--ESENLVVCDT-SKVVKVYSI  249 (250)
Q Consensus       191 ~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~-d~~i~vw~~  249 (250)
                      .|.+|++. ++...      ........+...+..++++|.  ||++|++++. ++.|++|++
T Consensus       283 ~i~v~~~~~~g~~~------~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          283 YIAGFKLRDCGSIE------KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EEEEEEECTTSCEE------EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             eEEEEEECCCCCEE------EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            89999996 44210      110012234556778889975  6888988876 489999986

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.79  E-value=5e-18  Score=146.14  Aligned_cols=207  Identities=9%  Similarity=-0.080  Sum_probs=150.3

Q ss_pred             cEEEEcccceeeeeeccC-----------CCCCeeeEEEc-CCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCC
Q 025649            2 WQIIDIRQHCLYKSLRAG-----------HSSICSSVQFI-PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNG   69 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~-----------h~~~v~~l~~~-~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~   69 (250)
                      |.+||+.+.++ ..+. +           |...+.+++|+ |+|+ .|++++ ++.|.+|++.+++... +. .      
T Consensus       267 i~~~d~~~~~l-~~l~-~~~~~~~~~~~~~~~~v~~~~~S~pdG~-~la~~~-~~~i~~~~~~~~~~~~-~~-~------  334 (1045)
T 1k32_A          267 IYIFNPDTEKI-EKIE-IGDLESPEDRIISIPSKFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTYVLK-VP-E------  334 (1045)
T ss_dssp             EEEECTTTCCE-EECC-CCCCCBCCSEEEECGGGGEEEEEECGGG-CEEEEE-TTEEEEECTTSSBEEE-CS-C------
T ss_pred             EEEecCCceEe-eeec-cCcccccccccccccccceeeecCCCCC-EEEEEE-cCEEEEEcCCCCceEE-cc-C------
Confidence            67888854443 3555 4           44579999999 9998 677777 7899999998765433 22 1      


Q ss_pred             CCCcccCCC-ceeEEecCCCcccCCCCCEEEEEeCCCeEE-EEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-
Q 025649           70 NAGQCYNPA-FVHAIAIPDADMLDKTNKICVVAKGDGVVD-VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-  146 (250)
Q Consensus        70 ~~~~~~~~~-~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  146 (250)
                            +.. .+..++|+       +++.|+.++.++.+. +||+.+++.....  .+...+..++|+|||+.++.... 
T Consensus       335 ------~~~~~~~~~~~s-------dg~~l~~~s~~~~l~~~~d~~~~~~~~l~--~~~~~~~~~~~SpDG~~la~~~~~  399 (1045)
T 1k32_A          335 ------PLRIRYVRRGGD-------TKVAFIHGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNGKFAVVANDR  399 (1045)
T ss_dssp             ------CSCEEEEEECSS-------SEEEEEEEETTEEEEEEEETTTCCEEECC--CCCCSEEEEEECTTSSEEEEEETT
T ss_pred             ------CCcceEEeeeEc-------CCCeEEEEECCCceEEEEECCCCCceEec--CCccceeeeEECCCCCEEEEECCC
Confidence                  334 67777776       678888888888898 9999877654333  34467889999999999984221 


Q ss_pred             --eeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC----------eEEEEecCCCcceecccccceeee
Q 025649          147 --LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK----------LVKVWDCSRFQGVQTSINNDLLIK  214 (250)
Q Consensus       147 --~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~----------~i~iwd~~~~~~~~~~~~~~~~~~  214 (250)
                        .-.++....+....+.+|...+.+++|+   |+|++|++++.++          .|++||+.++         + ...
T Consensus       400 ~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S---pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---------~-~~~  466 (1045)
T 1k32_A          400 FEIMTVDLETGKPTVIERSREAMITDFTIS---DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---------K-IFA  466 (1045)
T ss_dssp             SEEEEEETTTCCEEEEEECSSSCCCCEEEC---TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---------E-EEE
T ss_pred             CeEEEEECCCCceEEeccCCCCCccceEEC---CCCCeEEEEecCccccccCCCCCeEEEEECCCC---------c-EEE
Confidence              1111222223333445788888999999   8999999887654          9999999986         3 345


Q ss_pred             eeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          215 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +..|...+..++|+| ||++|++++.++...+|+.
T Consensus       467 l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          467 ATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             CSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECS
T ss_pred             eeCCCcccCCceEcC-CCCEEEEEecccCCcCcch
Confidence            667788888999998 8999999888877777763

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.77  E-value=5.9e-16  Score=118.24  Aligned_cols=216  Identities=11%  Similarity=0.015  Sum_probs=131.7

Q ss_pred             cEEEEc--ccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC----CeEEEEEccC--CCCc--cceecCCCCCCCCC
Q 025649            2 WQIIDI--RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD----SKLVMWDFSK--GRPN--KIVNFGLPENNGNA   71 (250)
Q Consensus         2 i~iwd~--~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d----g~v~iwd~~~--~~~~--~~~~~~~~~~~~~~   71 (250)
                      |.+|++  ++++...... .+...+..++|+|+++ +|++++.+    +.|.+|++..  ++..  .....         
T Consensus        29 i~~~~~d~~~g~~~~~~~-~~~~~p~~l~~spdg~-~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~---------   97 (361)
T 3scy_A           29 IYTFRFNEETGESLPLSD-AEVANPSYLIPSADGK-FVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT---------   97 (361)
T ss_dssp             EEEEEEETTTCCEEEEEE-EECSCCCSEEECTTSS-EEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC---------
T ss_pred             EEEEEEeCCCCCEEEeec-ccCCCCceEEECCCCC-EEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc---------
Confidence            566655  5666554444 3667788999999999 78877775    8999999875  3321  12211         


Q ss_pred             CcccCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCceeEeec----cCC---------CCCCccceeeccc
Q 025649           72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRS----KST---------TKPLKGSQSTSKV  137 (250)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~----~~~---------~~~~~~~~~~~~~  137 (250)
                          +......+++        ++++|++++ .++.|.+|++.....+...    ...         ....+.+++|+|+
T Consensus        98 ----~~~~p~~~~~--------dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd  165 (361)
T 3scy_A           98 ----MGADPCYLTT--------NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD  165 (361)
T ss_dssp             ----SSSCEEEEEE--------CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT
T ss_pred             ----CCCCcEEEEE--------CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC
Confidence                1233445555        355555554 6899999999753322111    000         1123467999999


Q ss_pred             ceeEEEee-------eeeeccCee------ee-----eeccccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecC
Q 025649          138 NIRDAEME-------ILDQSGGKR------LH-----LDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCS  198 (250)
Q Consensus       138 ~~~~~~~~-------~~~~~~~~~------~~-----~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~  198 (250)
                      |++++...       .++......      ..     ..... .+...+..++|+   |+|+++++++ .++.|.+||+.
T Consensus       166 g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~s---pdg~~l~v~~~~~~~v~v~~~~  241 (361)
T 3scy_A          166 GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV-APGSGPRHLIFN---SDGKFAYLINEIGGTVIAFRYA  241 (361)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-CTTCCEEEEEEC---TTSSEEEEEETTTCEEEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec-CCCCCCeEEEEc---CCCCEEEEEcCCCCeEEEEEec
Confidence            99776432       222221111      11     11122 234557899999   8999887776 68999999998


Q ss_pred             CCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC--CceEEEEeC
Q 025649          199 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT--SKVVKVYSI  249 (250)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~vw~~  249 (250)
                      ++.....    ..+.....+...+..++|+| ||++|++++.  ++.|.+|++
T Consensus       242 ~g~~~~~----~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~  289 (361)
T 3scy_A          242 DGMLDEI----QTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKV  289 (361)
T ss_dssp             TTEEEEE----EEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEE
T ss_pred             CCceEEe----EEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEE
Confidence            6532110    11112223344578899998 8998877665  489999986

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.77  E-value=2e-15  Score=111.55  Aligned_cols=207  Identities=9%  Similarity=0.051  Sum_probs=140.0

Q ss_pred             cEEEEcccceeeeeecc-----CCCCCeeeEEE-cCCCCeEEEEecC-CCeEEEEEccCCCCccceecCCCCCCCCCCcc
Q 025649            2 WQIIDIRQHCLYKSLRA-----GHSSICSSVQF-IPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQC   74 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~-----~h~~~v~~l~~-~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~   74 (250)
                      |++||.. ++.+..+..     +|...+..+++ .+++. ++++... ++.|.+|| .+++.+..+...           
T Consensus        53 i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~~~~i~~~d-~~g~~~~~~~~~-----------  118 (286)
T 1q7f_A           53 IQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTHQIQIYN-QYGQFVRKFGAT-----------  118 (286)
T ss_dssp             EEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGCEEEEEC-TTSCEEEEECTT-----------
T ss_pred             EEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCCCCEEEEEC-CCCcEEEEecCc-----------
Confidence            6788876 565555531     34467889999 46776 6666543 88999999 566666555422           


Q ss_pred             cCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC-CCCCCccceeecccceeEEEe------eee
Q 025649           75 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNIRDAEM------EIL  147 (250)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~  147 (250)
                       ....+.++++.|      +++++++...++.|.+||... +....+.. .....+..++++++|+.+++.      ..+
T Consensus       119 -~~~~~~~i~~~~------~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~  190 (286)
T 1q7f_A          119 -ILQHPRGVTVDN------KGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVF  190 (286)
T ss_dssp             -TCSCEEEEEECT------TSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEE
T ss_pred             -cCCCceEEEEeC------CCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEE
Confidence             234678999998      888888888889999999754 43333322 223457889999999877642      112


Q ss_pred             eeccCeeeeeecccc--CccccEEEEEeecCCCCCcEEEEeeCCC-eEEEEecCCCcceecccccceeeeeeccC--Cce
Q 025649          148 DQSGGKRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGNDK-LVKVWDCSRFQGVQTSINNDLLIKNINLN--KKV  222 (250)
Q Consensus       148 ~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~v  222 (250)
                      +.    ..+.+..+.  ++...+..++++   ++|+++++...++ .|.+||...          +.+..+..+.  ..+
T Consensus       191 ~~----~g~~~~~~~~~g~~~~p~~i~~d---~~G~l~v~~~~~~~~i~~~~~~g----------~~~~~~~~~~~~~~~  253 (286)
T 1q7f_A          191 NY----EGQYLRQIGGEGITNYPIGVGIN---SNGEILIADNHNNFNLTIFTQDG----------QLISALESKVKHAQC  253 (286)
T ss_dssp             ET----TCCEEEEESCTTTSCSEEEEEEC---TTCCEEEEECSSSCEEEEECTTS----------CEEEEEEESSCCSCE
T ss_pred             cC----CCCEEEEEccCCccCCCcEEEEC---CCCCEEEEeCCCCEEEEEECCCC----------CEEEEEcccCCCCcc
Confidence            21    112222332  333578899999   8999988888776 999999654          3333333333  347


Q ss_pred             eEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          223 NWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       223 ~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ..+++.| +|+++++ +.|+.|++|++
T Consensus       254 ~~i~~~~-~g~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          254 FDVALMD-DGSVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             EEEEEET-TTEEEEE-ETTTEEEEEEC
T ss_pred             eeEEECC-CCcEEEE-CCCCeEEEEEc
Confidence            7899997 8876666 67999999986

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=1.1e-16  Score=122.19  Aligned_cols=217  Identities=10%  Similarity=0.007  Sum_probs=138.8

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec----------CCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG----------LDSKLVMWDFSKGRPNKIVNFGLPENNGN   70 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~   70 (250)
                      +|.+||..+++.+..+. .+..+  .++|+|+++ +++++.          .+++|.+||+.+++.+..+......    
T Consensus        32 ~v~v~D~~t~~~~~~i~-~g~~p--~i~~spdg~-~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~----  103 (361)
T 2oiz_A           32 RVHVYDYTNGKFLGMVP-TAFNG--HVQVSNDGK-KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR----  103 (361)
T ss_dssp             EEEEEETTTCCEEEEEE-CCEEE--EEEECTTSS-EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB----
T ss_pred             eEEEEECCCCeEEEEec-CCCCC--ceEECCCCC-EEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc----
Confidence            36899999999999998 66666  899999999 666654          3678999999988888777643100    


Q ss_pred             CCcccCCCceeEEecCCCcccCCCCCEEEEEeC--CCeEEEEeCCCceeEee-ccCCCC--------CCccceeecccce
Q 025649           71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG--DGVVDVINIESELNISR-SKSTTK--------PLKGSQSTSKVNI  139 (250)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~  139 (250)
                         ..+......++++|      ++++|+++..  ++.|.+||+.+++.... +.....        ....-++++++|+
T Consensus       104 ---~~~g~~p~~i~~sp------dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~  174 (361)
T 2oiz_A          104 ---VQGLNYDGLFRQTT------DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGG  174 (361)
T ss_dssp             ---CCBCCCGGGEEECT------TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSS
T ss_pred             ---cccCCCcceEEECC------CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCc
Confidence               00113456789998      9999998864  68999999999887766 433211        0112244455554


Q ss_pred             eEEEeeeeeeccC---------------------eee-e--------eecccc--Cc-----------------c----c
Q 025649          140 RDAEMEILDQSGG---------------------KRL-H--------LDYSVG--GH-----------------T----A  166 (250)
Q Consensus       140 ~~~~~~~~~~~~~---------------------~~~-~--------~~~~~~--~h-----------------~----~  166 (250)
                      .+......+....                     ... .        .+..+.  ..                 .    .
T Consensus       175 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  254 (361)
T 2oiz_A          175 LLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG  254 (361)
T ss_dssp             EEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred             EEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccC
Confidence            4431100000000                     000 0        000000  00                 0    0


Q ss_pred             cEEEEEeecCCCCCcEEEEeeC-----------CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          167 AASCVAFSMFGERGKYLISGGN-----------DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       167 ~v~~~~~~p~~~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                      ....++|+   |+++.++.+..           .+.|.+||+.++         +.+..+..+.  +..++++| ||++|
T Consensus       255 g~~~~a~~---~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---------~~v~~i~~~~--p~~ia~sp-dg~~l  319 (361)
T 2oiz_A          255 GYNLVGLH---RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---------QRVARIPGRD--ALSMTIDQ-QRNLM  319 (361)
T ss_dssp             CSSCEEEE---TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------EEEEEEECTT--CCEEEEET-TTTEE
T ss_pred             CeeEEEEe---cCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------cEEEEEecCC--eeEEEECC-CCCEE
Confidence            00126778   78776665532           348999999997         5555665555  99999998 88899


Q ss_pred             EEeeCCceEEEEeCC
Q 025649          236 VVCDTSKVVKVYSIS  250 (250)
Q Consensus       236 ~s~~~d~~i~vw~~~  250 (250)
                      ++++. +.|.+||..
T Consensus       320 ~v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          320 LTLDG-GNVNVYDIS  333 (361)
T ss_dssp             EEECS-SCEEEEECS
T ss_pred             EEeCC-CeEEEEECC
Confidence            88886 999999963

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=2.4e-16  Score=120.69  Aligned_cols=221  Identities=9%  Similarity=-0.012  Sum_probs=135.1

Q ss_pred             cEEEE--cccceeee--eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc-CCCCccceecCCCCCCCCCCcccC
Q 025649            2 WQIID--IRQHCLYK--SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         2 i~iwd--~~~~~~~~--~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      |.+|+  .+++++..  ....+....+..++|+|+++ +|++++.+ .|.+|++. +++........            .
T Consensus        16 i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~-~l~~~~~~-~v~~~~~~~~g~~~~~~~~~------------~   81 (365)
T 1jof_A           16 IFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERK-NIYGAAMK-KWSSFAVKSPTEIVHEASHP------------I   81 (365)
T ss_dssp             EEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSS-EEEEEEBT-EEEEEEEEETTEEEEEEEEE------------C
T ss_pred             EEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCC-EEEEEccc-eEEEEEECCCCCEEEeeEee------------c
Confidence            44544  45665432  22102345788999999999 78888877 99999997 67654332211            0


Q ss_pred             CCceeEEecCCCcccCCCCCE--EEEEe-------------CCCeEEEEeCCC-ceeEeecc---CCCCCCccceeeccc
Q 025649           77 PAFVHAIAIPDADMLDKTNKI--CVVAK-------------GDGVVDVINIES-ELNISRSK---STTKPLKGSQSTSKV  137 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~--l~~~~-------------~d~~i~~~d~~~-~~~~~~~~---~~~~~~~~~~~~~~~  137 (250)
                      ......++++|      ++++  ++++.             .++.+.+|++.. ++......   ......+..++|+|+
T Consensus        82 ~g~~~~~~~sp------dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd  155 (365)
T 1jof_A           82 GGHPRANDADT------NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT  155 (365)
T ss_dssp             CSSGGGGCTTS------CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT
T ss_pred             CCCCccEEECC------CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC
Confidence            11244578888      8984  45553             689999999974 54433222   123467889999999


Q ss_pred             ceeEEEee-------eeeeccCeeeeeecccc--CccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecC--CCcceec
Q 025649          138 NIRDAEME-------ILDQSGGKRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCS--RFQGVQT  205 (250)
Q Consensus       138 ~~~~~~~~-------~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~--~~~~~~~  205 (250)
                      |++++...       .++.........+..+.  .|...+..++|+   |+|+++++++. ++.|.+|++.  ++.....
T Consensus       156 G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s---pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~  232 (365)
T 1jof_A          156 ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH---PTGNYLYALMEAGNRICEYVIDPATHMPVYT  232 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC---CCCCEEEEEECCCCeEEEEEEeCCCCcEEEc
Confidence            99877422       22222111112222232  245668999999   89998887765 7899999876  3321100


Q ss_pred             ccccceeeee----eccCC------ceeEEE-ecCCCCCeEEEeeCCc------eEEEEeC
Q 025649          206 SINNDLLIKN----INLNK------KVNWLC-TTPTESENLVVCDTSK------VVKVYSI  249 (250)
Q Consensus       206 ~~~~~~~~~~----~~~~~------~v~~~~-~~~~~~~~l~s~~~d~------~i~vw~~  249 (250)
                      .   ..+...    .+|..      .+..++ |+| ||++|++++.+.      .|.+|++
T Consensus       233 ~---~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~  289 (365)
T 1jof_A          233 H---HSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             E---EEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             c---ceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEE
Confidence            0   001111    12222      578899 887 898887765432      8999986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.76  E-value=1e-16  Score=133.44  Aligned_cols=216  Identities=6%  Similarity=-0.069  Sum_probs=140.4

Q ss_pred             CcEEEEcccceeeeeeccCCCCC-----eeeEEEcCCCCeEEEEecCC---------CeEEEEEccCCCCccceecCCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSI-----CSSVQFIPWKPWEVISGGLD---------SKLVMWDFSKGRPNKIVNFGLPE   66 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~-----v~~l~~~~~~~~~l~s~s~d---------g~v~iwd~~~~~~~~~~~~~~~~   66 (250)
                      +|++||+.+++....+. +|...     ...++|||||+ +|+.++.+         +.+.+||+.+++......     
T Consensus        37 ~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~-----  109 (740)
T 4a5s_A           37 NILVFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER-----  109 (740)
T ss_dssp             EEEEEETTTCCEEEEEC-TTTTTTCCSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-----
T ss_pred             cEEEEECCCCceEEEEe-chhhhhhcccccceEECCCCC-EEEEEECCeeeEEEccceEEEEEECCCCcEEEccc-----
Confidence            48999999999887777 77643     23478999999 78888776         566799999887543222     


Q ss_pred             CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC-----------------CCc
Q 025649           67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK-----------------PLK  129 (250)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----------------~~~  129 (250)
                               ++..+...+|||      ||+.|+.+ .++.|++||+.++...........                 ...
T Consensus       110 ---------~~~~~~~~~~SP------dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~  173 (740)
T 4a5s_A          110 ---------IPNNTQWVTWSP------VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (740)
T ss_dssp             ---------CCTTEEEEEECS------STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             ---------CCCcceeeEECC------CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence                     356789999999      99999888 468999999988765433221111                 122


Q ss_pred             cceeecccceeEEEeeeeeec----------------------------------------cCee---ee--eecccc--
Q 025649          130 GSQSTSKVNIRDAEMEILDQS----------------------------------------GGKR---LH--LDYSVG--  162 (250)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~---~~--~~~~~~--  162 (250)
                      ..+.|||||+.|+.... +..                                        +...   .+  ....+.  
T Consensus       174 ~~~~wSpDg~~la~~~~-d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~  252 (740)
T 4a5s_A          174 SALWWSPNGTFLAYAQF-NDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP  252 (740)
T ss_dssp             BCEEECTTSSEEEEEEE-ECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred             cceEECCCCCEEEEEEE-cccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence            35889999999984321 111                                        0000   00  011111  


Q ss_pred             ----CccccEEEEEeecCCCCCcEEEEee----CCCeEEEEecCCCc----ceecccccceeeeeeccCCcee-----EE
Q 025649          163 ----GHTAAASCVAFSMFGERGKYLISGG----NDKLVKVWDCSRFQ----GVQTSINNDLLIKNINLNKKVN-----WL  225 (250)
Q Consensus       163 ----~h~~~v~~~~~~p~~~~~~~l~s~~----~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~v~-----~~  225 (250)
                          +|...+..++|+   |+|+.++...    .+..|++||+.+++    +...    .. .....|...+.     ..
T Consensus       253 ~~~~~~~~~~~~~~ws---pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~----~~-l~~~~~~~~v~~~~~~~p  324 (740)
T 4a5s_A          253 ASMLIGDHYLCDVTWA---TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA----RQ-HIEMSTTGWVGRFRPSEP  324 (740)
T ss_dssp             HHHHTSCEEEEEEEEE---ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG----GC-EEEECSSSCSSSSSCCCC
T ss_pred             ccCCCCCeEEEEEEEe---CCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE----EE-eeeccCCceEccCcCCCc
Confidence                366778999999   8998666543    23479999999875    2110    00 11134554443     67


Q ss_pred             EecCCCCCeEE-Eee-CCc--eEEEEeC
Q 025649          226 CTTPTESENLV-VCD-TSK--VVKVYSI  249 (250)
Q Consensus       226 ~~~~~~~~~l~-s~~-~d~--~i~vw~~  249 (250)
                      +|+| ||+.|+ ..+ .+|  .|++||+
T Consensus       325 ~fsp-DG~~l~~~~s~~~G~~~l~~~~~  351 (740)
T 4a5s_A          325 HFTL-DGNSFYKIISNEEGYRHICYFQI  351 (740)
T ss_dssp             EECT-TSSEEEEEEECTTSCEEEEEEET
T ss_pred             eEcC-CCCEEEEEEEcCCCceEEEEEEC
Confidence            8987 888766 554 444  5777764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.76  E-value=3.7e-17  Score=132.62  Aligned_cols=186  Identities=10%  Similarity=-0.023  Sum_probs=127.0

Q ss_pred             CCCeeeEEEcCCCCeEEEEecC-CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649           21 SSICSSVQFIPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV   99 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~   99 (250)
                      ..+|.+++|+|||+ .|++++. ||+++||++.+++...... +            +...+..++|+|      + ++++
T Consensus        21 ~~~~~~~~~~~DG~-~la~~s~~~g~~~lw~~~~g~~~~lt~-~------------~~~~~~~~~~sp------d-~~l~   79 (582)
T 3o4h_A           21 AVEKYSLQGVVDGD-KLLVVGFSEGSVNAYLYDGGETVKLNR-E------------PINSVLDPHYGV------G-RVIL   79 (582)
T ss_dssp             HSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTEEEECCS-S------------CCSEECEECTTC------S-EEEE
T ss_pred             ccchheeecCCCCC-eEEEEEccCCceeEEEEcCCCcEeeec-c------------cccccccccCCC------C-eEEE
Confidence            56899999999999 7888776 9999999996655433322 2            225789999998      7 7777


Q ss_pred             EEeC---CCeEEEEeCCC---ceeEeeccCCCCCCccceeecccceeEEEe-e------eeeeccCeeeeeeccccCccc
Q 025649          100 VAKG---DGVVDVINIES---ELNISRSKSTTKPLKGSQSTSKVNIRDAEM-E------ILDQSGGKRLHLDYSVGGHTA  166 (250)
Q Consensus       100 ~~~~---d~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~h~~  166 (250)
                      +++.   +...++|.+..   +... .....  ......+|+|+|+.++.+ +      .++....+   .. .+..+..
T Consensus        80 ~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~---~~-~l~~~~~  152 (582)
T 3o4h_A           80 VRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG---LR-ELARLPG  152 (582)
T ss_dssp             EEECSTTSCCEEEEEEETTSTTCCE-ECTTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE---EE-EEEEESS
T ss_pred             EeccCCCCcceEEEEEeccCCCccc-cccCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc---EE-EeecCCC
Confidence            7764   45556654432   2222 22222  234466888888654321 1      22222221   11 1222222


Q ss_pred             cEEEEEeecCCCCCcEEEEeeCC----CeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCc
Q 025649          167 AASCVAFSMFGERGKYLISGGND----KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK  242 (250)
Q Consensus       167 ~v~~~~~~p~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  242 (250)
                        .+++|+   |+|++|++++.|    +.|++||+.++         +. ..+..|...+..++|+| ||+.|++++.++
T Consensus       153 --~~~~~s---pDG~~la~~~~~~~~~~~i~~~d~~~g---------~~-~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~  216 (582)
T 3o4h_A          153 --FGFVSD---IRGDLIAGLGFFGGGRVSLFTSNLSSG---------GL-RVFDSGEGSFSSASISP-GMKVTAGLETAR  216 (582)
T ss_dssp             --CEEEEE---EETTEEEEEEEEETTEEEEEEEETTTC---------CC-EEECCSSCEEEEEEECT-TSCEEEEEECSS
T ss_pred             --ceEEEC---CCCCEEEEEEEcCCCCeEEEEEcCCCC---------Cc-eEeecCCCccccceECC-CCCEEEEccCCC
Confidence              788999   899999988877    78999999986         32 35567888899999998 999999888888


Q ss_pred             --eEEEEeCC
Q 025649          243 --VVKVYSIS  250 (250)
Q Consensus       243 --~i~vw~~~  250 (250)
                        .|++||+.
T Consensus       217 ~~~i~~~d~~  226 (582)
T 3o4h_A          217 EARLVTVDPR  226 (582)
T ss_dssp             CEEEEEECTT
T ss_pred             eeEEEEEcCC
Confidence              89999863

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.75  E-value=2.7e-16  Score=119.27  Aligned_cols=152  Identities=9%  Similarity=-0.050  Sum_probs=104.9

Q ss_pred             eEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE-EEeCC
Q 025649           26 SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGD  104 (250)
Q Consensus        26 ~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~-~~~~d  104 (250)
                      .+++++++. ++++++.+++|.+||+.+++.+..+..+            ....+..++++|      ++++++ +...+
T Consensus         4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~------------~~~~~~~~~~s~------dg~~~~v~~~~~   64 (349)
T 1jmx_B            4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMP------------DKFGPGTAMMAP------DNRTAYVLNNHY   64 (349)
T ss_dssp             CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEECS------------SCCSSCEEEECT------TSSEEEEEETTT
T ss_pred             cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEecC------------CCCCCceeEECC------CCCEEEEEeCCC
Confidence            456778777 8999999999999999999888777644            111467899998      888654 55678


Q ss_pred             CeEEEEeCCCceeEeeccCCC-----CCCccceeecccceeEEEeeee---------------eeccCee---eeeeccc
Q 025649          105 GVVDVINIESELNISRSKSTT-----KPLKGSQSTSKVNIRDAEMEIL---------------DQSGGKR---LHLDYSV  161 (250)
Q Consensus       105 ~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~---~~~~~~~  161 (250)
                      +.|.+||+.+++.........     ...+..++|+|+|++++.....               ...+...   .+.+..+
T Consensus        65 ~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  144 (349)
T 1jmx_B           65 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF  144 (349)
T ss_dssp             TEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE
T ss_pred             CcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec
Confidence            999999999988776555432     2347889999999988843311               0111111   1112222


Q ss_pred             cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649          162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV  203 (250)
Q Consensus       162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~  203 (250)
                      . +...+.+++|+   |+|+ ++.++.  .|++||+.+++..
T Consensus       145 ~-~~~~~~~~~~s---~dg~-l~~~~~--~i~~~d~~~~~~~  179 (349)
T 1jmx_B          145 P-MPRQVYLMRAA---DDGS-LYVAGP--DIYKMDVKTGKYT  179 (349)
T ss_dssp             E-CCSSCCCEEEC---TTSC-EEEESS--SEEEECTTTCCEE
T ss_pred             c-CCCcccceeEC---CCCc-EEEccC--cEEEEeCCCCcee
Confidence            2 23357889999   8998 555543  4999999887544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.74  E-value=1.6e-15  Score=114.42  Aligned_cols=221  Identities=7%  Similarity=-0.027  Sum_probs=145.8

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC-CccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +|.+||..+++.+..+..++-.....++++|+|. ++++...++.|++||..... .+..+...  ....  ....+...
T Consensus        70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~--~~~g--~~~~~~~~  144 (329)
T 3fvz_A           70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRS--MQPG--SDQNHFCQ  144 (329)
T ss_dssp             CEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBT--TBCC--CSTTCCSS
T ss_pred             cEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEeccc--CCCC--CCccccCC
Confidence            3789999889887766534556789999999999 89999999999999985432 34443211  0000  00012345


Q ss_pred             eeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCceeEeeccCC---------CCCCccceeeccc-ceeEEE-----
Q 025649           80 VHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKST---------TKPLKGSQSTSKV-NIRDAE-----  143 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~-----  143 (250)
                      ...++++|     .+++++++.+ .++.|++||. .+.....+...         .-.....++++|+ +.++++     
T Consensus       145 P~~ia~~~-----~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~  218 (329)
T 3fvz_A          145 PTDVAVEP-----STGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG  218 (329)
T ss_dssp             EEEEEECT-----TTCCEEEEECSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT
T ss_pred             CcEEEEeC-----CCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC
Confidence            78899987     2567777775 6899999995 45544433211         1133678999998 666653     


Q ss_pred             -eeeeeeccCeeeeeeccc--cCccccEEEEEeecCCCCCcEEEE-------eeCCCeEEEEecCCCcceecccccceee
Q 025649          144 -MEILDQSGGKRLHLDYSV--GGHTAAASCVAFSMFGERGKYLIS-------GGNDKLVKVWDCSRFQGVQTSINNDLLI  213 (250)
Q Consensus       144 -~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~~~~~~~~  213 (250)
                       +..++..   ..+.+..+  ..+...+.+++|+   | +..+.+       ...+..|++||..++         +.+.
T Consensus       219 ~I~~~~~~---~G~~~~~~~~~~~~~~~~~~~~~---p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g---------~~~~  282 (329)
T 3fvz_A          219 RIQCFKTD---TKEFVREIKHASFGRNVFAISYI---P-GFLFAVNGKPYFGDQEPVQGFVMNFSSG---------EIID  282 (329)
T ss_dssp             EEEEEETT---TCCEEEEECCTTTTTCEEEEEEE---T-TEEEEEECCCCTTCSCCCCEEEEETTTC---------CEEE
T ss_pred             EEEEEECC---CCcEEEEEeccccCCCcceeeec---C-CEEEEeCCCEEeccCCCcEEEEEEcCCC---------eEEE
Confidence             1223322   12223333  3456678899999   7 333333       334558999999987         4444


Q ss_pred             ee---eccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          214 KN---INLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       214 ~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .+   ..+...+..++++| +|.++++...++.|++|++
T Consensus       283 ~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          283 VFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             EECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEE
T ss_pred             EEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEeC
Confidence            43   35667789999997 8888888888999999985

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.74  E-value=5.1e-16  Score=117.12  Aligned_cols=144  Identities=14%  Similarity=0.073  Sum_probs=101.8

Q ss_pred             EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC-ceeEEecCCCcccCCCCCEE-EEEeCCCeEEEEeCC
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA-FVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIE  113 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~  113 (250)
                      +|++++.++.|.+||+.+++.+..+..+            +.. .+..++++|      +++.+ +++..++.|.+||+.
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~------------~~~~~~~~~~~s~------dg~~l~v~~~~~~~v~~~d~~   64 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIA------------DAGPTPMVPMVAP------GGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECT------------TCTTCCCCEEECT------TSSEEEEEETTTTEEEEEETT
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcC------------CCCCCccceEEcC------CCCEEEEEeCCCCeEEEEECC
Confidence            7899999999999999999888777644            111 477899998      88765 555668899999999


Q ss_pred             CceeEeeccCCC----CCCccceeecccceeEEEee---------------eeeeccCeeeeeeccccCccccEEEEEee
Q 025649          114 SELNISRSKSTT----KPLKGSQSTSKVNIRDAEME---------------ILDQSGGKRLHLDYSVGGHTAAASCVAFS  174 (250)
Q Consensus       114 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  174 (250)
                      +++....+....    ...+..++++|+|++++...               .....+....+.+..+.. ...+.+++|+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s  143 (337)
T 1pby_B           65 TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA  143 (337)
T ss_dssp             TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC
T ss_pred             CCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC
Confidence            988776554432    12677899999998887442               111112222223333332 3456788999


Q ss_pred             cCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649          175 MFGERGKYLISGGNDKLVKVWDCSRFQGV  203 (250)
Q Consensus       175 p~~~~~~~l~s~~~d~~i~iwd~~~~~~~  203 (250)
                         |+|++++++  ++.|++||+.+++..
T Consensus       144 ---~dg~~l~~~--~~~i~~~d~~~~~~~  167 (337)
T 1pby_B          144 ---RDGSKLYGL--GRDLHVMDPEAGTLV  167 (337)
T ss_dssp             ---TTSSCEEEE--SSSEEEEETTTTEEE
T ss_pred             ---CCCCEEEEe--CCeEEEEECCCCcEe
Confidence               899988877  688999999887543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.73  E-value=2.2e-17  Score=137.01  Aligned_cols=197  Identities=10%  Similarity=0.088  Sum_probs=127.8

Q ss_pred             eeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC-
Q 025649           25 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-  103 (250)
Q Consensus        25 ~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-  103 (250)
                      .+++|+|+++ +++++ .|++|++||+.+++....+..+.          .....+.+++|+|      ||++|+.++. 
T Consensus        19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~Sp------Dg~~la~~~~~   80 (719)
T 1z68_A           19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTILSNRT----------MKSVNASNYGLSP------DRQFVYLESDY   80 (719)
T ss_dssp             CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEEECHHH----------HHTTTCSEEEECT------TSSEEEEEEEE
T ss_pred             CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEEEcccc----------ccccceeeEEECC------CCCeEEEEecC
Confidence            3789999996 56555 59999999999988765554110          0001378999999      9999998876 


Q ss_pred             --------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-----eeeccCeeeeeeccccCccccE--
Q 025649          104 --------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-----LDQSGGKRLHLDYSVGGHTAAA--  168 (250)
Q Consensus       104 --------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~h~~~v--  168 (250)
                              ++.|++||+.+++.......  ...+..++|||||+.++....     ++.......+  ....++...|  
T Consensus        81 ~~~~~~s~~~~i~~~d~~~g~~~~~~~l--~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~--l~~~~~~~~v~~  156 (719)
T 1z68_A           81 SKLWRYSYTATYYIYDLSNGEFVRGNEL--PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQ--ITFNGRENKIFN  156 (719)
T ss_dssp             EECSSSCEEEEEEEEETTTTEECCSSCC--CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEE--CCCCCBTTTEEE
T ss_pred             ceeEEeecceEEEEEECCCCccccceec--CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEE--EecCCCcCCeEc
Confidence                    78999999998876211111  246888999999999985431     2211111111  0112222222  


Q ss_pred             ---------------EEEEeecCCCCCcEEEEeeCCC----------------------------------eEEEEecCC
Q 025649          169 ---------------SCVAFSMFGERGKYLISGGNDK----------------------------------LVKVWDCSR  199 (250)
Q Consensus       169 ---------------~~~~~~p~~~~~~~l~s~~~d~----------------------------------~i~iwd~~~  199 (250)
                                     .+++||   |+|++|++++.|.                                  .|++||+.+
T Consensus       157 g~~~~v~~ee~~~~~~~~~wS---PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~  233 (719)
T 1z68_A          157 GIPDWVYEEEMLATKYALWWS---PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY  233 (719)
T ss_dssp             SSCCHHHHHHTTCSSCCEEEC---TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC
T ss_pred             ccccceeeeecccCcccEEEC---CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC
Confidence                           489999   8999999987652                                  788999988


Q ss_pred             CcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC--C--ceEEEEe
Q 025649          200 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT--S--KVVKVYS  248 (250)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d--~~i~vw~  248 (250)
                      +.......- .....+.+|...+..++|+| |++++++...  +  ..|.+||
T Consensus       234 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          234 PAYVGPQEV-PVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             HHHHCCEEC-CCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEE
T ss_pred             CCccceeEc-cCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEc
Confidence            642100000 00012345777899999998 6877766432  2  3477887

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.71  E-value=8.1e-15  Score=110.50  Aligned_cols=217  Identities=11%  Similarity=-0.046  Sum_probs=145.1

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|.+||.++++.+.++. . ......+++++++. ++++...++.|.+||+.+++....+..+...        ......
T Consensus        65 ~v~viD~~t~~~~~~i~-~-~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~--------~~~~~p  133 (328)
T 3dsm_A           65 VIFAIDINTFKEVGRIT-G-FTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMD--------MESGST  133 (328)
T ss_dssp             EEEEEETTTCCEEEEEE-C-CSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCC--------TTTCBC
T ss_pred             EEEEEECcccEEEEEcC-C-CCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCcc--------ccCCCc
Confidence            37899999999999887 3 46678999999985 6666668999999999998877777644100        001134


Q ss_pred             eEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeee------------
Q 025649           81 HAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL------------  147 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  147 (250)
                      ..+++ .      +++++++.. .++.|.++|+.+++....+...  .....+.++|+|++++.....            
T Consensus       134 ~~i~~-~------~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~  204 (328)
T 3dsm_A          134 EQMVQ-Y------GKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS  204 (328)
T ss_dssp             CCEEE-E------TTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE
T ss_pred             ceEEE-E------CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcCCCCEEEEECCCccCCccccCCce
Confidence            45555 3      555555554 4899999999998877666543  456789999999977642211            


Q ss_pred             -eeccCeeeeeeccccCc-cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649          148 -DQSGGKRLHLDYSVGGH-TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL  225 (250)
Q Consensus       148 -~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (250)
                       ...+....+....+... ......++++   |+++++..+..  .|.+||..+++...     .  .........+..+
T Consensus       205 v~~id~~t~~v~~~~~~~~g~~p~~la~~---~d~~~lyv~~~--~v~~~d~~t~~~~~-----~--~~~~~~~~~p~gi  272 (328)
T 3dsm_A          205 LYRIDAETFTVEKQFKFKLGDWPSEVQLN---GTRDTLYWINN--DIWRMPVEADRVPV-----R--PFLEFRDTKYYGL  272 (328)
T ss_dssp             EEEEETTTTEEEEEEECCTTCCCEEEEEC---TTSCEEEEESS--SEEEEETTCSSCCS-----S--CSBCCCSSCEEEE
T ss_pred             EEEEECCCCeEEEEEecCCCCCceeEEEe---cCCCEEEEEcc--EEEEEECCCCceee-----e--eeecCCCCceEEE
Confidence             11111222222233211 2357899999   88888877654  89999998864210     0  0111124568899


Q ss_pred             EecCCCCCeEEEe----eCCceEEEEeC
Q 025649          226 CTTPTESENLVVC----DTSKVVKVYSI  249 (250)
Q Consensus       226 ~~~~~~~~~l~s~----~~d~~i~vw~~  249 (250)
                      ++.|.++.++++.    ..++.|.+||.
T Consensus       273 ~vdp~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          273 TVNPNNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             EECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred             EEcCCCCeEEEEcccccccCCEEEEECC
Confidence            9998667666666    67899999986

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=1.4e-15  Score=117.18  Aligned_cols=215  Identities=9%  Similarity=-0.030  Sum_probs=136.1

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |.+||+.+++...... ++...+..+.|+|+++ .|+.++.++.|++||+.+++....+..+             ...+.
T Consensus        62 l~~~d~~~g~~~~lt~-~~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~g~~~~~~~~~-------------~~~~~  126 (388)
T 3pe7_A           62 YYLLDLNTQVATQLTE-GRGDNTFGGFLSPDDD-ALFYVKDGRNLMRVDLATLEENVVYQVP-------------AEWVG  126 (388)
T ss_dssp             EEEEETTTCEEEECCC-SSCBCSSSCEECTTSS-EEEEEETTTEEEEEETTTCCEEEEEECC-------------TTEEE
T ss_pred             EEEEeCCCCceEEeee-CCCCCccceEEcCCCC-EEEEEeCCCeEEEEECCCCcceeeeech-------------hhccc
Confidence            6778998998877777 7777777889999999 7999998999999999988766555422             23332


Q ss_pred             EE--ecCCCcccCCCCCEEEEE----------------------eCCCeEEEEeCCCceeEeeccCCCCCCccceeecc-
Q 025649           82 AI--AIPDADMLDKTNKICVVA----------------------KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK-  136 (250)
Q Consensus        82 ~~--~~~~~~~~~~~~~~l~~~----------------------~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-  136 (250)
                      ..  .++|      ++++++..                      ..+..|.+||+.+++........  ..+..+.|+| 
T Consensus       127 ~~~~~~~~------dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~~~~~~sp~  198 (388)
T 3pe7_A          127 YGTWVANS------DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN--QWLGHPIYRPY  198 (388)
T ss_dssp             EEEEEECT------TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES--SCEEEEEEETT
T ss_pred             ccceeECC------CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC--ccccccEECCC
Confidence            22  3366      88887643                      24578999999988655443332  4678899999 


Q ss_pred             cceeEEEeeee-------eeccCe-eeeeeccccCcc--ccEEEEEeecCCCCCcEEEEeeC-CC----eEEEEecCCCc
Q 025649          137 VNIRDAEMEIL-------DQSGGK-RLHLDYSVGGHT--AAASCVAFSMFGERGKYLISGGN-DK----LVKVWDCSRFQ  201 (250)
Q Consensus       137 ~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~h~--~~v~~~~~~p~~~~~~~l~s~~~-d~----~i~iwd~~~~~  201 (250)
                      +|+.++.....       ..+... .......+..+.  ..+...+|+   |+|+.|+..+. ++    .|++||+.+++
T Consensus       199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s---pdg~~l~~~~~~~~~~~~~l~~~d~~~g~  275 (388)
T 3pe7_A          199 DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWV---PDGSALVYVSYLKGSPDRFIYSADPETLE  275 (388)
T ss_dssp             EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEEC---TTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred             CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceEC---CCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence            99988753321       111000 011122333333  357788999   89987765443 22    39999999874


Q ss_pred             ceecccccceeeeeeccCC---ceeEEEecCCCCCeEEEe---------eCCceEEEEeCC
Q 025649          202 GVQTSINNDLLIKNINLNK---KVNWLCTTPTESENLVVC---------DTSKVVKVYSIS  250 (250)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~---------~~d~~i~vw~~~  250 (250)
                      ..       .+....++..   ....++|+| ||+.|+..         ..+..|++||+.
T Consensus       276 ~~-------~l~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~  328 (388)
T 3pe7_A          276 NR-------QLTSMPACSHLMSNYDGSLMVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMK  328 (388)
T ss_dssp             EE-------EEEEECCEEEEEECTTSSEEEE-EECCC------------CCCCEEEEEETT
T ss_pred             eE-------EEEcCCCceeeeecCCCCeEcc-CCCcceeEeeeccccccCCCCEEEEEecc
Confidence            32       1112211100   012236887 77776643         456789999863

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.70  E-value=9.3e-15  Score=112.55  Aligned_cols=210  Identities=9%  Similarity=0.012  Sum_probs=135.5

Q ss_pred             EEEcccceeeeeeccCCCCCeee-----EEEcCCCCeEEEEecC-CC--eEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649            4 IIDIRQHCLYKSLRAGHSSICSS-----VQFIPWKPWEVISGGL-DS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         4 iwd~~~~~~~~~l~~~h~~~v~~-----l~~~~~~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      .+|..++..+..+. .|......     .+|+|||+ .|+.++. +|  .|.+||+.+++...... +            
T Consensus        14 ~~~~~~g~~~~~lt-~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-~------------   78 (388)
T 3pe7_A           14 YQDASTGAQVTRLT-PPDVTCHRNYFYQKCFTRDGS-KLLFGGAFDGPWNYYLLDLNTQVATQLTE-G------------   78 (388)
T ss_dssp             EECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTCEEEECCC-S------------
T ss_pred             EecCCCCcceEEec-CCcccccchhhcCccCCCCCC-EEEEEEcCCCCceEEEEeCCCCceEEeee-C------------
Confidence            34677888888888 77766655     88999999 6776666 67  48888998877654443 2            


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccc--eeecccceeEEEeeeee-----
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS--QSTSKVNIRDAEMEILD-----  148 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----  148 (250)
                      +...+..+.|+|      +++.|+.++.++.|++||+.+++.......+. ..+..  ..++|+++.++......     
T Consensus        79 ~~~~~~~~~~sp------dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~  151 (388)
T 3pe7_A           79 RGDNTFGGFLSP------DDDALFYVKDGRNLMRVDLATLEENVVYQVPA-EWVGYGTWVANSDCTKLVGIEIRREDWVP  151 (388)
T ss_dssp             SCBCSSSCEECT------TSSEEEEEETTTEEEEEETTTCCEEEEEECCT-TEEEEEEEEECTTSSEEEEEEEEGGGCCC
T ss_pred             CCCCccceEEcC------CCCEEEEEeCCCeEEEEECCCCcceeeeechh-hcccccceeECCCCCeeccccccCccccc
Confidence            123344678998      99999999999999999999987655444332 22222  23488888876321110     


Q ss_pred             ------------------e--ccCeeeeeeccccCccccEEEEEeecCCC-CCcEEEEeeCC------CeEEEEecCCCc
Q 025649          149 ------------------Q--SGGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGND------KLVKVWDCSRFQ  201 (250)
Q Consensus       149 ------------------~--~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~~~l~s~~~d------~~i~iwd~~~~~  201 (250)
                                        .  .+....+ ...+..+...+..++|+   | +|+.|+..+.+      ..|.++|...+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~s---p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~  227 (388)
T 3pe7_A          152 LTDWKKFHEFYFTKPCCRLMRVDLKTGE-STVILQENQWLGHPIYR---PYDDSTVAFCHEGPHDLVDARMWLINEDGTN  227 (388)
T ss_dssp             CCSHHHHHHHGGGCCCEEEEEEETTTCC-EEEEEEESSCEEEEEEE---TTEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred             ccccchhhhhhccCCcceEEEEECCCCc-eEEeecCCccccccEEC---CCCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence                              0  0001111 12233455668899999   8 99988877653      378888877642


Q ss_pred             ceecccccceeeeeeccC--CceeEEEecCCCCCeEEEeeC-C----ceEEEEeCC
Q 025649          202 GVQTSINNDLLIKNINLN--KKVNWLCTTPTESENLVVCDT-S----KVVKVYSIS  250 (250)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~-d----~~i~vw~~~  250 (250)
                               . ..+..+.  ..+...+|+| ||+.|+..+. +    +.|++||+.
T Consensus       228 ---------~-~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~  272 (388)
T 3pe7_A          228 ---------M-RKVKTHAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPE  272 (388)
T ss_dssp             ---------C-EESCCCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTT
T ss_pred             ---------e-EEeeeCCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecC
Confidence                     2 2222333  3577788998 8887755332 2    249999863

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.70  E-value=4.6e-14  Score=106.52  Aligned_cols=217  Identities=10%  Similarity=-0.046  Sum_probs=140.1

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      ++.|   .++....+. .+...+.+++|+|++. +++++..++.|.+||..+++...... .            ....+.
T Consensus        29 ~~~~---~~~~~~~~~-~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~~~-~------------~~~~~~   90 (333)
T 2dg1_A           29 LQTI---TAEPWLEIS-KKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFV-S------------HKANPA   90 (333)
T ss_dssp             SCEE---ECEEEEEEE-SSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEE-C------------SSSSEE
T ss_pred             Cccc---ccceeEEEe-ccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEEee-C------------CCCCcc
Confidence            3455   345556677 7777889999999998 88888999999999998776544332 1            245789


Q ss_pred             EEecCCCcccCCCCCEEEEEeCC----CeEEEEeCCCceeEeecc-CCCCCCccceeecccceeEEEeee-------eee
Q 025649           82 AIAIPDADMLDKTNKICVVAKGD----GVVDVINIESELNISRSK-STTKPLKGSQSTSKVNIRDAEMEI-------LDQ  149 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  149 (250)
                      +++++|      +++++++...+    +.|.+||..++....... ......+..+.++|+|+.+++...       ...
T Consensus        91 ~i~~~~------dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l  164 (333)
T 2dg1_A           91 AIKIHK------DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGV  164 (333)
T ss_dssp             EEEECT------TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEE
T ss_pred             eEEECC------CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceE
Confidence            999998      88888877766    689999998876542222 122356788999999987774321       011


Q ss_pred             c--cCeeeeeeccccCccccEEEEEeecCCCCCcEE-EEeeCCCeEEEEecCC-CcceecccccceeeeeeccCCceeEE
Q 025649          150 S--GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSR-FQGVQTSINNDLLIKNINLNKKVNWL  225 (250)
Q Consensus       150 ~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l-~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (250)
                      .  .....+ +..+..+...+..++|+   |+|+++ ++.+.++.|.+||+.. +....... ........++ ..+..+
T Consensus       165 ~~~~~~~~~-~~~~~~~~~~~~~i~~~---~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~-~~~~~~~~~~-~~~~~i  238 (333)
T 2dg1_A          165 YYVSPDFRT-VTPIIQNISVANGIALS---TDEKVLWVTETTANRLHRIALEDDGVTIQPFG-ATIPYYFTGH-EGPDSC  238 (333)
T ss_dssp             EEECTTSCC-EEEEEEEESSEEEEEEC---TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE-EEEEEECCSS-SEEEEE
T ss_pred             EEEeCCCCE-EEEeecCCCcccceEEC---CCCCEEEEEeCCCCeEEEEEecCCCcCccccc-ceEEEecCCC-CCCCce
Confidence            1  111001 11111223357889999   888755 5556688999999964 22111000 0011111122 467788


Q ss_pred             EecCCCCCeEEEeeCCceEEEEeC
Q 025649          226 CTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       226 ~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ++.+ +|.++++...++.|.+||.
T Consensus       239 ~~d~-~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          239 CIDS-DDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             EEBT-TCCEEEEEETTTEEEEECT
T ss_pred             EECC-CCCEEEEEcCCCEEEEECC
Confidence            8987 7887777777889999985

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.69  E-value=4e-14  Score=105.18  Aligned_cols=203  Identities=9%  Similarity=-0.040  Sum_probs=138.4

Q ss_pred             ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649           10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD   89 (250)
Q Consensus        10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (250)
                      +..+..+. .+.....+++|+|+++.+++++..++.|..||..++  ...+...             ...+.+++++|  
T Consensus        17 ~~~~~~l~-~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~-------------~~~~~~l~~~~--   78 (296)
T 3e5z_A           17 GAEARRLA-DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHP-------------SHHQNGHCLNK--   78 (296)
T ss_dssp             TCCCEEEE-CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESS-------------CSSEEEEEECT--
T ss_pred             CCcEEEEe-cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECC-------------CCCcceeeECC--
Confidence            34445666 666778899999999757888889999999999876  4455422             45688999998  


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC---CCCCCccceeecccceeEEEe---ee-----------------
Q 025649           90 MLDKTNKICVVAKGDGVVDVINIESELNISRSKS---TTKPLKGSQSTSKVNIRDAEM---EI-----------------  146 (250)
Q Consensus        90 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~-----------------  146 (250)
                          +++++++...++.|.+||..+++.......   .....+..++++|+|+++++.   +.                 
T Consensus        79 ----dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~  154 (296)
T 3e5z_A           79 ----QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRW  154 (296)
T ss_dssp             ----TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred             ----CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcE
Confidence                899888877789999999977765433221   112356789999999988742   11                 


Q ss_pred             -eeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecC-CCcceecccccceeeeeeccCCceeE
Q 025649          147 -LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS-RFQGVQTSINNDLLIKNINLNKKVNW  224 (250)
Q Consensus       147 -~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (250)
                       +.....   ..+..+..+......++|+   |+|+.+++.+.++.|.+||+. .+....     . ...+..+...+..
T Consensus       155 l~~~~~~---g~~~~~~~~~~~~~gi~~s---~dg~~lv~~~~~~~i~~~~~~~~g~~~~-----~-~~~~~~~~~~p~~  222 (296)
T 3e5z_A          155 VFRLAPD---GTLSAPIRDRVKPNGLAFL---PSGNLLVSDTGDNATHRYCLNARGETEY-----Q-GVHFTVEPGKTDG  222 (296)
T ss_dssp             EEEECTT---SCEEEEECCCSSEEEEEEC---TTSCEEEEETTTTEEEEEEECSSSCEEE-----E-EEEECCSSSCCCS
T ss_pred             EEEECCC---CCEEEeecCCCCCccEEEC---CCCCEEEEeCCCCeEEEEEECCCCcCcC-----C-CeEeeCCCCCCCe
Confidence             111111   1112233445567899999   899988778888999999997 332100     0 1111234556778


Q ss_pred             EEecCCCCCeEEEeeCCceEEEEeC
Q 025649          225 LCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       225 ~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +++.+ +|+++++.  ++.|.+||.
T Consensus       223 i~~d~-~G~l~v~~--~~~v~~~~~  244 (296)
T 3e5z_A          223 LRVDA-GGLIWASA--GDGVHVLTP  244 (296)
T ss_dssp             EEEBT-TSCEEEEE--TTEEEEECT
T ss_pred             EEECC-CCCEEEEc--CCeEEEECC
Confidence            89987 78755555  788999975

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.69  E-value=5e-14  Score=103.45  Aligned_cols=199  Identities=13%  Similarity=0.001  Sum_probs=136.7

Q ss_pred             CcEEEEcccceeeeeeccCCC-CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHS-SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      .|++||.++|+.+.++. .+. ..+.++.++|+|+ +|+  +.++.|..||. +++.+..+..+            ....
T Consensus        16 ~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~~------------~~~~   78 (276)
T 3no2_A           16 KIAIINKDTKEIVWEYP-LEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRELWNIAAP------------AGCE   78 (276)
T ss_dssp             EEEEEETTTTEEEEEEE-CCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCEEEEEECC------------TTCE
T ss_pred             EEEEEECCCCeEEEEeC-CCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCEEEEEcCC------------CCcc
Confidence            37899999999999999 665 5789999999998 777  34788999999 89988888743            2346


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeC-CCeEEEEeCCCceeEeeccCCC-----CCCccceeecccceeEEEee---eeeec
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTT-----KPLKGSQSTSKVNIRDAEME---ILDQS  150 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~  150 (250)
                      +.++.+.|      +++++++.+. ++.|..+|. +++.+..+....     ......+...++|.++++..   ..-..
T Consensus        79 ~~~~~~~~------dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~  151 (276)
T 3no2_A           79 MQTARILP------DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREI  151 (276)
T ss_dssp             EEEEEECT------TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEE
T ss_pred             ccccEECC------CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEE
Confidence            78888888      9999999887 888888886 566554443211     12344567888999887421   11111


Q ss_pred             cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC------CceeE
Q 025649          151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN------KKVNW  224 (250)
Q Consensus       151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~v~~  224 (250)
                      +.. .+.+.++... ..+.++...   ++|+++++++.+++|..+|..+++.+         -.+....      ..+..
T Consensus       152 d~~-G~~~w~~~~~-~~~~~~~~~---~~g~~~v~~~~~~~v~~~d~~tG~~~---------w~~~~~~~~~~~l~~~~~  217 (276)
T 3no2_A          152 APN-GQLLNSVKLS-GTPFSSAFL---DNGDCLVACGDAHCFVQLNLESNRIV---------RRVNANDIEGVQLFFVAQ  217 (276)
T ss_dssp             CTT-SCEEEEEECS-SCCCEEEEC---TTSCEEEECBTTSEEEEECTTTCCEE---------EEEEGGGSBSCCCSEEEE
T ss_pred             CCC-CCEEEEEECC-CCccceeEc---CCCCEEEEeCCCCeEEEEeCcCCcEE---------EEecCCCCCCcccccccc
Confidence            222 3444455443 334566667   89999999998889999999988433         2222211      22556


Q ss_pred             EEecCCCCCeEEEe
Q 025649          225 LCTTPTESENLVVC  238 (250)
Q Consensus       225 ~~~~~~~~~~l~s~  238 (250)
                      ++..+ +|.++++.
T Consensus       218 ~~~~~-~G~i~v~~  230 (276)
T 3no2_A          218 LFPLQ-NGGLYICN  230 (276)
T ss_dssp             EEECT-TSCEEEEE
T ss_pred             ceEcC-CCCEEEEe
Confidence            66665 66666555

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.68  E-value=4.3e-15  Score=112.72  Aligned_cols=193  Identities=9%  Similarity=0.012  Sum_probs=124.7

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC---C--eEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD---S--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d---g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      |.+||+.+++.. .+     ..+..++|+|+|+ .|+.++.+   +  .|.+||+.+++.......              
T Consensus        45 l~~~d~~~~~~~-~l-----~~~~~~~~SpDg~-~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--------------  103 (347)
T 2gop_A           45 IVIENLKNNARR-FI-----ENATMPRISPDGK-KIAFMRANEEKKVSEIWVADLETLSSKKILEA--------------  103 (347)
T ss_dssp             EEEEETTTCCEE-EE-----ESCEEEEECTTSS-EEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--------------
T ss_pred             EEEEeCCCCceE-Ec-----ccCCCeEECCCCC-EEEEEEeccCCCcceEEEEECCCCceEEEEcC--------------
Confidence            567788776643 23     3578899999999 67766543   3  477788877765544431              


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCC---------------------------CeEEEEeCCCceeEeeccCCCCCCc
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGD---------------------------GVVDVINIESELNISRSKSTTKPLK  129 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d---------------------------~~i~~~d~~~~~~~~~~~~~~~~~~  129 (250)
                      .. +..+.|+|      +++.|+.++.+                           ..|.+||+.+++....+..  . .+
T Consensus       104 ~~-~~~~~wsp------dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~  173 (347)
T 2gop_A          104 KN-IRSLEWNE------DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RF  173 (347)
T ss_dssp             SE-EEEEEECT------TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TT
T ss_pred             CC-ccceeECC------CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-Cc
Confidence            23 88999999      99988887642                           5799999998876333333  2 67


Q ss_pred             cceeecccceeEEEeeeee-----------eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC--------C
Q 025649          130 GSQSTSKVNIRDAEMEILD-----------QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND--------K  190 (250)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d--------~  190 (250)
                      ..+.|+|+| .+++ +..+           .+..... ....+..+ ..+..+  +   |+|++|+.++.+        .
T Consensus       174 ~~~~~spdg-~~~~-~~~~~~~~~~~~~~~l~~~d~~-~~~~l~~~-~~~~~~--s---pdg~~l~~~~~~~~~~~~~~~  244 (347)
T 2gop_A          174 SSGIWHRDK-IVVN-VPHREIIPQYFKFWDIYIWEDG-KEEKMFEK-VSFYAV--D---SDGERILLYGKPEKKYMSEHN  244 (347)
T ss_dssp             CEEEEETTE-EEEE-EECCCSSCCSSCCEEEEEEETT-EEEEEEEE-ESEEEE--E---ECSSCEEEEECCSSSCCCSSC
T ss_pred             ccccCCCCe-EEEE-EecccccccccccccEEEeCCC-ceEEeccC-cceeeE--C---CCCCEEEEEEccccCCccccc
Confidence            889999999 5553 2221           1111100 11122223 334443  7   899988877644        3


Q ss_pred             eEEEEecCCCcceecccccceeeeeeccCCceeE-EEecCCCCCeEEEeeCCceEEEEeC
Q 025649          191 LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW-LCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       191 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .|.+||  ++         +.......+...+.. +.|+  |+ ++++++.++.++|| +
T Consensus       245 ~l~~~d--~~---------~~~~l~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~  289 (347)
T 2gop_A          245 KLYIYD--GK---------EVMGILDEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-I  289 (347)
T ss_dssp             EEEEEC--SS---------CEEESSTTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-E
T ss_pred             eEEEEC--CC---------ceEeccccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-E
Confidence            688888  43         332333455667776 7786  67 88889999999999 6

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.67  E-value=1e-14  Score=119.98  Aligned_cols=216  Identities=7%  Similarity=-0.066  Sum_probs=134.3

Q ss_pred             cEEEEcccceeeeeeccCCCCCee---------eEEEc--CCCCeEEEEe-cCCCeEEEEEcc--C-CCCccceecCCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICS---------SVQFI--PWKPWEVISG-GLDSKLVMWDFS--K-GRPNKIVNFGLPE   66 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~---------~l~~~--~~~~~~l~s~-s~dg~v~iwd~~--~-~~~~~~~~~~~~~   66 (250)
                      ..||....+.....+. .|...+.         ...|+  |||+.+|+.+ ..+..|.++++.  . ++ ...+...   
T Consensus        49 ~~l~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~---  123 (662)
T 3azo_A           49 ATLVRRRADGAEESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPV---  123 (662)
T ss_dssp             EEEEEECTTSCEEESS-CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCC---
T ss_pred             EEEEEECCCCCcceeC-CCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCC---
Confidence            4678755445556676 6766666         66665  9999415444 446677777765  2 33 2333210   


Q ss_pred             CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC----------CeEEEEeCCC------ceeEeeccCCCCCCcc
Q 025649           67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD----------GVVDVINIES------ELNISRSKSTTKPLKG  130 (250)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~------~~~~~~~~~~~~~~~~  130 (250)
                           ....+...+.+++|+|      +|+.|+.++.+          ..|.+||+.+      +...... ......+.
T Consensus       124 -----~~~~~~~~~~~~~~sp------Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~  191 (662)
T 3azo_A          124 -----SAVGGGLRWADPVLLP------ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELS-DDAHRFVT  191 (662)
T ss_dssp             -----CCSTTCEEEEEEEEET------TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESS-CSCSSEEC
T ss_pred             -----ccCCCCccccCcEECC------CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEE-ecCCCccc
Confidence                 0000235678899999      99999998877          6899999988      5543332 02235678


Q ss_pred             ceeecccceeEEEeeee---------eecc--Ce-ee---eeeccccCccccEEEEEeecCCCCCcEEEEeeCCC--eEE
Q 025649          131 SQSTSKVNIRDAEMEIL---------DQSG--GK-RL---HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK--LVK  193 (250)
Q Consensus       131 ~~~~~~~~~~~~~~~~~---------~~~~--~~-~~---~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~--~i~  193 (250)
                      .++|+|||+.++.....         ..+.  .. ..   +......+|...+..++|+   |+|+++++++.++  .|.
T Consensus       192 ~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s---pdg~l~~~~~~~~~~~l~  268 (662)
T 3azo_A          192 GPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA---PDGSLIVATDRTGWWNLH  268 (662)
T ss_dssp             CCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC---TTSCEEEEECTTSSCEEE
T ss_pred             CceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC---CCCeEEEEECCCCCeEEE
Confidence            89999999999843311         1111  11 11   2222233456788999999   8999888888888  666


Q ss_pred             EEecCCCcceecccccceeeeeeccCCc--------eeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          194 VWDCSRFQGVQTSINNDLLIKNINLNKK--------VNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       194 iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      +||+.++...         .....+...        +..++++| +++++++++. +.++||.
T Consensus       269 ~~~~~~~~~~---------~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~  320 (662)
T 3azo_A          269 RVDPATGAAT---------QLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGI  320 (662)
T ss_dssp             EECTTTCCEE---------ESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEE
T ss_pred             EEECCCCcee---------ecccccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEE
Confidence            6676555321         111112111        45678876 7888888888 9999994

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.67  E-value=1.1e-14  Score=121.37  Aligned_cols=199  Identities=10%  Similarity=0.011  Sum_probs=126.3

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  100 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  100 (250)
                      ......+.|+|+++ +++++  |++|++||+.+++....+..+..        .........+.|+|      |+++|+.
T Consensus        16 ~~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~Sp------dg~~l~~   78 (740)
T 4a5s_A           16 RLKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVFLENSTF--------DEFGHSINDYSISP------DGQFILL   78 (740)
T ss_dssp             CCCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEEECTTTT--------TTCCSCCCEEEECT------TSSEEEE
T ss_pred             cccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEEEechhh--------hhhcccccceEECC------CCCEEEE
Confidence            34567899999998 78886  89999999999987655542200        00111224578898      9999999


Q ss_pred             EeCC---------CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec--cCeeeee-eccccCccccE
Q 025649          101 AKGD---------GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS--GGKRLHL-DYSVGGHTAAA  168 (250)
Q Consensus       101 ~~~d---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~h~~~v  168 (250)
                      ++.+         +.+.+||+.+++......  ....+...+|||||+.++.+...+..  .....+. ..+..++...+
T Consensus        79 ~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~--~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~  156 (740)
T 4a5s_A           79 EYNYVKQWRHSYTASYDIYDLNKRQLITEER--IPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDII  156 (740)
T ss_dssp             EEEEEECSSSCEEEEEEEEETTTTEECCSSC--CCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred             EECCeeeEEEccceEEEEEECCCCcEEEccc--CCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccce
Confidence            9876         566799999987554222  23568899999999999854322211  1111111 11122332222


Q ss_pred             -----------------EEEEeecCCCCCcEEEEeeCCC------------------------------------eEEEE
Q 025649          169 -----------------SCVAFSMFGERGKYLISGGNDK------------------------------------LVKVW  195 (250)
Q Consensus       169 -----------------~~~~~~p~~~~~~~l~s~~~d~------------------------------------~i~iw  195 (250)
                                       ..+.||   |||+.|+.++.|.                                    .|++|
T Consensus       157 ~~g~~~~v~~ee~~~~~~~~~wS---pDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~  233 (740)
T 4a5s_A          157 YNGITDWVYEEEVFSAYSALWWS---PNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV  233 (740)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEEC---TTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             ecCcccccccchhcCCCcceEEC---CCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence                             348899   8999999876432                                    46667


Q ss_pred             ecCC---Ccceecccccceeeeee------ccCCceeEEEecCCCCCeEEEee----CCceEEEEeC
Q 025649          196 DCSR---FQGVQTSINNDLLIKNI------NLNKKVNWLCTTPTESENLVVCD----TSKVVKVYSI  249 (250)
Q Consensus       196 d~~~---~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~----~d~~i~vw~~  249 (250)
                      |+.+   +...      .. ..+.      +|...+..++|+| ||+.++...    .+..|++||+
T Consensus       234 d~~~~~~~~~~------~~-~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~  292 (740)
T 4a5s_A          234 NTDSLSSVTNA------TS-IQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDY  292 (740)
T ss_dssp             ETTSCCSSSCC------CE-EEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEE
T ss_pred             ECCCCCCCCcc------eE-EEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEEC
Confidence            7766   5210      01 1111      3667789999998 888655532    3447999985

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.66  E-value=2.1e-13  Score=100.71  Aligned_cols=200  Identities=11%  Similarity=0.063  Sum_probs=133.5

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEec-CCCcccCCCCCE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI-PDADMLDKTNKI   97 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~   97 (250)
                      ++-....++++++++. ++++...++.|.+||.. ++.+..+....       ....+...+.++++ .+      ++++
T Consensus        27 g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~~~-------~~~~~~~~p~~i~~~~~------~g~l   91 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGECG-------KRDSQLLYPNRVAVVRN------SGDI   91 (286)
T ss_dssp             TCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBS-------SSTTCBSSEEEEEEETT------TTEE
T ss_pred             CccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecccC-------CCcccccCceEEEEEcC------CCeE
Confidence            4556789999999998 88888889999999986 55554443110       00012245788888 45      6777


Q ss_pred             EEEEeC-CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeeecccc--CccccEEEE
Q 025649           98 CVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVG--GHTAAASCV  171 (250)
Q Consensus        98 l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~h~~~v~~~  171 (250)
                      +++... ++.|.+|| .+++....+.......+..++++|+|+.+++..   .....+. ..+.+..+.  .+...+.++
T Consensus        92 ~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i  169 (286)
T 1q7f_A           92 IVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGV  169 (286)
T ss_dssp             EEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEE
T ss_pred             EEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEE
Confidence            666643 89999999 455555544433335678899999998776421   1111111 111222222  344568999


Q ss_pred             EeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc--CCceeEEEecCCCCCeEEEeeCCc-eEEEEe
Q 025649          172 AFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL--NKKVNWLCTTPTESENLVVCDTSK-VVKVYS  248 (250)
Q Consensus       172 ~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~-~i~vw~  248 (250)
                      +++   ++|+++++.+.++.|++||...          ..+..+..+  ...+..+++.+ +|+++++...++ .|.+||
T Consensus       170 ~~~---~~g~l~v~~~~~~~i~~~~~~g----------~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~  235 (286)
T 1q7f_A          170 VVN---DKQEIFISDNRAHCVKVFNYEG----------QYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFT  235 (286)
T ss_dssp             EEC---SSSEEEEEEGGGTEEEEEETTC----------CEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEEC
T ss_pred             EEC---CCCCEEEEECCCCEEEEEcCCC----------CEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEEC
Confidence            999   8899888888899999999754          233333222  35688999997 788888877775 999998


Q ss_pred             C
Q 025649          249 I  249 (250)
Q Consensus       249 ~  249 (250)
                      .
T Consensus       236 ~  236 (286)
T 1q7f_A          236 Q  236 (286)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.65  E-value=2.7e-13  Score=99.18  Aligned_cols=212  Identities=8%  Similarity=-0.062  Sum_probs=134.4

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |.+||..++....... .+...+.++++++++. ++++.. ++.|.+||...... ..+...            ....+.
T Consensus        48 i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~-~~~~~~------------~~~~p~  111 (270)
T 1rwi_B           48 VVKLATGSTGTTVLPF-NGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQ-TVLPFD------------GLNYPE  111 (270)
T ss_dssp             EEEECC-----EECCC-CSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCC-EECCCC------------SCSSEE
T ss_pred             EEEecCCCcccceEee-CCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceE-eeeecC------------CcCCCc
Confidence            4566655443322222 3445788999999998 677766 88999999865432 222211            124578


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeee
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLD  158 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  158 (250)
                      ++++.|      +++++++...++.|.+|+..+....... .........++++++|+.+++..   .............
T Consensus       112 ~i~~~~------~g~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~  184 (270)
T 1rwi_B          112 GLAVDT------QGAVYVADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV  184 (270)
T ss_dssp             EEEECT------TCCEEEEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred             ceEECC------CCCEEEEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE
Confidence            899998      8888888778899999987654433221 11124678899999998666321   1111111111111


Q ss_pred             ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649          159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC  238 (250)
Q Consensus       159 ~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  238 (250)
                      .....+...+.+++++   ++|+++++...++.|.+||.....         .......+...+..+++.+ +|+++++.
T Consensus       185 ~~~~~~~~~p~~i~~d---~~g~l~v~~~~~~~v~~~~~~~~~---------~~~~~~~~~~~p~~i~~~~-~g~l~v~~  251 (270)
T 1rwi_B          185 VLPFTDITAPWGIAVD---EAGTVYVTEHNTNQVVKLLAGSTT---------STVLPFTGLNTPLAVAVDS-DRTVYVAD  251 (270)
T ss_dssp             ECCCSSCCSEEEEEEC---TTCCEEEEETTTSCEEEECTTCSC---------CEECCCCSCSCEEEEEECT-TCCEEEEE
T ss_pred             eecccCCCCceEEEEC---CCCCEEEEECCCCcEEEEcCCCCc---------ceeeccCCCCCceeEEECC-CCCEEEEE
Confidence            1112233568899999   888888888788999999987642         1111122335688999987 78888888


Q ss_pred             eCCceEEEEeC
Q 025649          239 DTSKVVKVYSI  249 (250)
Q Consensus       239 ~~d~~i~vw~~  249 (250)
                      ..++.|+++++
T Consensus       252 ~~~~~v~~~~~  262 (270)
T 1rwi_B          252 RGNDRVVKLTS  262 (270)
T ss_dssp             GGGTEEEEECC
T ss_pred             CCCCEEEEEcC
Confidence            88999999986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.65  E-value=9.9e-15  Score=112.57  Aligned_cols=221  Identities=5%  Similarity=-0.087  Sum_probs=130.4

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCC-Cc-
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP-AF-   79 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-   79 (250)
                      |.+||+.+++...... ++......+.|+|+|+ .|+.++.++.|.+||+.+++.......+.........+.+.. .. 
T Consensus        62 l~~~d~~~~~~~~l~~-~~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  139 (396)
T 3c5m_A           62 YYLLNLETQQAVQLTE-GKGDNTFGGFISTDER-AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL  139 (396)
T ss_dssp             EEEEETTTTEEEECCC-SSCBCTTTCEECTTSS-EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred             EEEEECCCCcEEEeec-CCCCccccceECCCCC-EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence            5678888887654444 4443344588999999 788888888999999988775544432200000000000000 00 


Q ss_pred             ----eeEEecCCCcccCCCCCEEEEE-----eCCCeEEEEeCCCceeEeeccCCCCCCccceeecc-cceeEEEeeeeee
Q 025649           80 ----VHAIAIPDADMLDKTNKICVVA-----KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK-VNIRDAEMEILDQ  149 (250)
Q Consensus        80 ----v~~~~~~~~~~~~~~~~~l~~~-----~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  149 (250)
                          .....++|      +++.++..     ..+..|.+||+.+++.......  ...+..+.|+| ++..++.... +.
T Consensus       140 ~~~~~~~~~~sp------dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~--~~~~~~~~~sp~dg~~l~~~~~-~~  210 (396)
T 3c5m_A          140 VGIEILKRDWQP------LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD--TAWLGHPIYRPFDDSTVGFCHE-GP  210 (396)
T ss_dssp             EEEEEEGGGCCC------CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE--SSCEEEEEEETTEEEEEEEEEC-SC
T ss_pred             ccccccccccCC------CCcceeeeeeccCCCcceEEEEECCCCcEEeeccC--CcccccceECCCCCCEEEEEec-CC
Confidence                00034566      77776654     4667899999998775544322  35678899999 8887764332 11


Q ss_pred             c--------c--CeeeeeeccccCc--cccEEEEEeecCCCCCcEEEEeeCC-----CeEEEEecCCCcceeccccccee
Q 025649          150 S--------G--GKRLHLDYSVGGH--TAAASCVAFSMFGERGKYLISGGND-----KLVKVWDCSRFQGVQTSINNDLL  212 (250)
Q Consensus       150 ~--------~--~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~  212 (250)
                      .        .  .... ....+..+  ...+..++|+   |+|++|+.++.+     +.|++||+.++...       .+
T Consensus       211 ~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~s---pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-------~l  279 (396)
T 3c5m_A          211 HDLVDARMWLVNEDGS-NVRKIKEHAEGESCTHEFWI---PDGSAMAYVSYFKGQTDRVIYKANPETLENE-------EV  279 (396)
T ss_dssp             SSSCSCCCEEEETTSC-CCEESSCCCTTEEEEEEEEC---TTSSCEEEEEEETTTCCEEEEEECTTTCCEE-------EE
T ss_pred             CCCCCceEEEEECCCC-ceeEeeccCCCccccceEEC---CCCCEEEEEecCCCCccceEEEEECCCCCeE-------Ee
Confidence            1        0  0011 11122222  2357889999   899987776543     45999999886321       11


Q ss_pred             eeeeccCCceeEEEecCCCCCeEEEee----------------CCceEEEEeC
Q 025649          213 IKNINLNKKVNWLCTTPTESENLVVCD----------------TSKVVKVYSI  249 (250)
Q Consensus       213 ~~~~~~~~~v~~~~~~~~~~~~l~s~~----------------~d~~i~vw~~  249 (250)
                      ..   .. ... +.|+|.||+++++++                .++.|++||+
T Consensus       280 ~~---~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~  327 (396)
T 3c5m_A          280 MV---MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT  327 (396)
T ss_dssp             EE---CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred             ee---CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence            11   11 122 778865788777654                3478999986

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.64  E-value=2.1e-14  Score=118.09  Aligned_cols=200  Identities=8%  Similarity=-0.057  Sum_probs=124.2

Q ss_pred             eeeeeeccC-----CCCCeeeEEEcCCCCeEEEEecCC----------CeEEEEEccC------CCCccceecCCCCCCC
Q 025649           11 CLYKSLRAG-----HSSICSSVQFIPWKPWEVISGGLD----------SKLVMWDFSK------GRPNKIVNFGLPENNG   69 (250)
Q Consensus        11 ~~~~~l~~~-----h~~~v~~l~~~~~~~~~l~s~s~d----------g~v~iwd~~~------~~~~~~~~~~~~~~~~   69 (250)
                      .....+. .     |...+..++|+|||+ .|++++.+          ..|.+||+.+      ++.......       
T Consensus       115 ~~~~~l~-~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-------  185 (662)
T 3azo_A          115 AVPRPLT-PVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDD-------  185 (662)
T ss_dssp             CCCEECS-CCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCS-------
T ss_pred             CCCEecc-CCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEec-------
Confidence            4445666 4     677899999999999 78887766          5899999987      443222201       


Q ss_pred             CCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC--------CeEEEEeCC-Cce--eEeeccCCCCCCccceeecccc
Q 025649           70 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD--------GVVDVINIE-SEL--NISRSKSTTKPLKGSQSTSKVN  138 (250)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d--------~~i~~~d~~-~~~--~~~~~~~~~~~~~~~~~~~~~~  138 (250)
                            +...+..++|+|      ||++|+.++.+        ..|.+||+. ++.  ....+.......+..+.|+|||
T Consensus       186 ------~~~~~~~~~~Sp------DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg  253 (662)
T 3azo_A          186 ------AHRFVTGPRLSP------DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG  253 (662)
T ss_dssp             ------CSSEECCCEECT------TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred             ------CCCcccCceECC------CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence                  245678889999      99999888754        489999998 561  2223322223577889999999


Q ss_pred             eeEEEeeeeee----c--cCeeeeeeccccCcccc--------EEEEEeecCCCCCcEEEEeeCCCeEEEE--ecCCCcc
Q 025649          139 IRDAEMEILDQ----S--GGKRLHLDYSVGGHTAA--------ASCVAFSMFGERGKYLISGGNDKLVKVW--DCSRFQG  202 (250)
Q Consensus       139 ~~~~~~~~~~~----~--~~~~~~~~~~~~~h~~~--------v~~~~~~p~~~~~~~l~s~~~d~~i~iw--d~~~~~~  202 (250)
                      +++++ ...+.    +  +....+.......+...        +..++|+   ++++++++++. +.++||  |+.++  
T Consensus       254 ~l~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~---~~~~~~~~~~~-~~~~l~~~d~~~~--  326 (662)
T 3azo_A          254 SLIVA-TDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPL---ANGLIAVVHGK-GAAVLGILDPESG--  326 (662)
T ss_dssp             CEEEE-ECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEEC---TTSCEEEEEBS-SSCEEEEEETTTT--
T ss_pred             eEEEE-ECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEe---CCCEEEEEEEc-CccEEEEEECCCC--
Confidence            95553 22221    1  11111111112222221        4578888   88999999998 999999  55554  


Q ss_pred             eecccccceeeeeeccCCceeEE-EecCCCCCeEEEeeCCceEEEE
Q 025649          203 VQTSINNDLLIKNINLNKKVNWL-CTTPTESENLVVCDTSKVVKVY  247 (250)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~s~~~d~~i~vw  247 (250)
                             . +..+..|...+..+ .+.+ +.-++++++.+....+|
T Consensus       327 -------~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          327 -------E-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             -------E-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEEEEE
T ss_pred             -------c-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCCEEE
Confidence                   2 34455566667666 4432 22233445556555555

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.63  E-value=9.6e-13  Score=105.72  Aligned_cols=214  Identities=11%  Similarity=0.017  Sum_probs=140.1

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEcc--CCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS--KGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|.++|..+++.+.++. . ...+..+.|+|+|+ ++++++.|+.|.+||+.  +++.+..+..+              .
T Consensus       178 ~V~viD~~t~~v~~~i~-~-g~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t~~~v~~i~~G--------------~  240 (567)
T 1qks_A          178 QIALIDGSTYEIKTVLD-T-GYAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--------------S  240 (567)
T ss_dssp             EEEEEETTTCCEEEEEE-C-SSCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCEEEEEECC--------------S
T ss_pred             eEEEEECCCCeEEEEEe-C-CCCccceEECCCCC-EEEEEcCCCeEEEEECCCCCCcEeEEEecC--------------C
Confidence            47899999999999998 3 33567999999999 78888899999999995  77777777644              3


Q ss_pred             ceeEEecC----CCcccCCCCCEEEEEe-CCCeEEEEeCCCceeEeeccCCC----------CCCccceeecccceeEEE
Q 025649           79 FVHAIAIP----DADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTT----------KPLKGSQSTSKVNIRDAE  143 (250)
Q Consensus        79 ~v~~~~~~----~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~  143 (250)
                      ....++++    |      +|++++++. .++.|.++|..+.+.+..+....          ...+..+..++++..++.
T Consensus       241 ~P~~ia~s~~~~p------DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv  314 (567)
T 1qks_A          241 EARSIETSKMEGW------EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV  314 (567)
T ss_dssp             EEEEEEECCSTTC------TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred             CCceeEEccccCC------CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEE
Confidence            45788999    7      898887776 45999999999987776544321          124556777777655442


Q ss_pred             e-------eeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCcceecccccceeee-
Q 025649          144 M-------EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIK-  214 (250)
Q Consensus       144 ~-------~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-  214 (250)
                      .       ...+........ +..+. .......+.|+   |+|+++++++ .++.|.++|+.+++...      .+.. 
T Consensus       315 ~~~~~g~v~~vd~~~~~~~~-v~~i~-~~~~~~d~~~~---pdgr~~~va~~~sn~V~ViD~~t~kl~~------~i~vg  383 (567)
T 1qks_A          315 NVKETGKILLVDYTDLNNLK-TTEIS-AERFLHDGGLD---GSHRYFITAANARNKLVVIDTKEGKLVA------IEDTG  383 (567)
T ss_dssp             EETTTTEEEEEETTCSSEEE-EEEEE-CCSSEEEEEEC---TTSCEEEEEEGGGTEEEEEETTTTEEEE------EEECS
T ss_pred             EecCCCeEEEEecCCCccce-eeeee-ccccccCceEC---CCCCEEEEEeCCCCeEEEEECCCCcEEE------EEecc
Confidence            1       112221111111 11221 22345678899   8999887665 57899999999974321      1111 


Q ss_pred             -eeccCCceeEEEecCCCCCeEEEee-CCceEEEEeC
Q 025649          215 -NINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI  249 (250)
Q Consensus       215 -~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw~~  249 (250)
                       ...|.+.-..+ ++|..+..++++. .++.|.++|.
T Consensus       384 g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~  419 (567)
T 1qks_A          384 GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGT  419 (567)
T ss_dssp             SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecC
Confidence             12343322122 4553355555553 4688999985

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.62  E-value=6.9e-13  Score=98.47  Aligned_cols=205  Identities=8%  Similarity=-0.110  Sum_probs=131.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |..||..++  ...+. .+...+.+++++|+|. ++++...++.|.+||..+++.........       .  .....+.
T Consensus        52 i~~~~~~~~--~~~~~-~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~~~~~~~~~~-------~--~~~~~~~  118 (296)
T 3e5z_A           52 TWAWSDDGQ--LSPEM-HPSHHQNGHCLNKQGH-LIACSHGLRRLERQREPGGEWESIADSFE-------G--KKLNSPN  118 (296)
T ss_dssp             EEEEETTSC--EEEEE-SSCSSEEEEEECTTCC-EEEEETTTTEEEEECSTTCCEEEEECEET-------T--EECCCCC
T ss_pred             EEEEECCCC--eEEEE-CCCCCcceeeECCCCc-EEEEecCCCeEEEEcCCCCcEEEEeeccC-------C--CCCCCCC
Confidence            677888776  56676 6778899999999998 78887778999999998776433221100       0  0112456


Q ss_pred             EEecCCCcccCCCCCEEEEE----e-------------CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe
Q 025649           82 AIAIPDADMLDKTNKICVVA----K-------------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM  144 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~----~-------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (250)
                      .+++.|      +|+++++.    .             ..+.|..++.. ++.....  ........++++|+|+.+++.
T Consensus       119 ~i~~d~------~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--~~~~~~~gi~~s~dg~~lv~~  189 (296)
T 3e5z_A          119 DVCLAP------DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI--RDRVKPNGLAFLPSGNLLVSD  189 (296)
T ss_dssp             CEEECT------TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE--CCCSSEEEEEECTTSCEEEEE
T ss_pred             CEEECC------CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee--cCCCCCccEEECCCCCEEEEe
Confidence            788888      89988873    2             13466666665 4332222  122456789999999987431


Q ss_pred             ------eeeeeccCeee-eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeec
Q 025649          145 ------EILDQSGGKRL-HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN  217 (250)
Q Consensus       145 ------~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  217 (250)
                            ..++....... .....+..+...+.+++++   ++|+++++.  ++.|.+||...          +.+..+..
T Consensus       190 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d---~~G~l~v~~--~~~v~~~~~~g----------~~~~~~~~  254 (296)
T 3e5z_A          190 TGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVD---AGGLIWASA--GDGVHVLTPDG----------DELGRVLT  254 (296)
T ss_dssp             TTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEB---TTSCEEEEE--TTEEEEECTTS----------CEEEEEEC
T ss_pred             CCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEEC---CCCCEEEEc--CCeEEEECCCC----------CEEEEEEC
Confidence                  12222211111 0011122344556789999   899877766  78999999874          44455555


Q ss_pred             cCCceeEEEecCCCCCeEEEeeCCceE
Q 025649          218 LNKKVNWLCTTPTESENLVVCDTSKVV  244 (250)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~s~~~d~~i  244 (250)
                      +.. +.+++|..++++.|++++.++..
T Consensus       255 ~~~-~~~~~f~~~d~~~L~v~t~~~l~  280 (296)
T 3e5z_A          255 PQT-TSNLCFGGPEGRTLYMTVSTEFW  280 (296)
T ss_dssp             SSC-CCEEEEESTTSCEEEEEETTEEE
T ss_pred             CCC-ceeEEEECCCCCEEEEEcCCeEE
Confidence            666 88999954488888888877533

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.61  E-value=1.1e-13  Score=101.56  Aligned_cols=178  Identities=8%  Similarity=-0.072  Sum_probs=125.8

Q ss_pred             EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  115 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  115 (250)
                      +|++++.|+.|.+||.++|+.+..+..+            ....++++.+.|      +|++++  +.++.|..||. ++
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~~w~~~~~------------~~~~~~~~~~~p------dG~ilv--s~~~~V~~~d~-~G   65 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEIVWEYPLE------------KGWECNSVAATK------AGEILF--SYSKGAKMITR-DG   65 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEEEEEEECC------------TTCCCCEEEECT------TSCEEE--ECBSEEEEECT-TS
T ss_pred             EEEeeCCCCEEEEEECCCCeEEEEeCCC------------ccCCCcCeEECC------CCCEEE--eCCCCEEEECC-CC
Confidence            8999999999999999999999888744            113578889998      999888  45788999999 78


Q ss_pred             eeEeeccCCCCCCccceeecccceeEEEeeeeeecc---Ceeeeeeccc------cCccccEEEEEeecCCCCCcEEEEe
Q 025649          116 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG---GKRLHLDYSV------GGHTAAASCVAFSMFGERGKYLISG  186 (250)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~h~~~v~~~~~~p~~~~~~~l~s~  186 (250)
                      +.+..+.......+.++.+.++|+.+++....+...   ....+.+.++      ..+......+++.   ++|+++++.
T Consensus        66 ~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~---~~G~~lv~~  142 (276)
T 3no2_A           66 RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKN---KKGNYLVPL  142 (276)
T ss_dssp             CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEEC---TTSCEEEEE
T ss_pred             CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceEC---CCCCEEEEe
Confidence            888777765445677888999999988532201110   0111222221      1222234455667   899999999


Q ss_pred             eCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          187 GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       187 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ..++.|..||.. +         +.+-.+... ..+.++...+ ++.++++++.++.|..+|.
T Consensus       143 ~~~~~v~~~d~~-G---------~~~w~~~~~-~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~  193 (276)
T 3no2_A          143 FATSEVREIAPN-G---------QLLNSVKLS-GTPFSSAFLD-NGDCLVACGDAHCFVQLNL  193 (276)
T ss_dssp             TTTTEEEEECTT-S---------CEEEEEECS-SCCCEEEECT-TSCEEEECBTTSEEEEECT
T ss_pred             cCCCEEEEECCC-C---------CEEEEEECC-CCccceeEcC-CCCEEEEeCCCCeEEEEeC
Confidence            999999999998 6         443333332 3455666666 7888888888888888874

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.60  E-value=1.1e-12  Score=98.81  Aligned_cols=197  Identities=9%  Similarity=-0.015  Sum_probs=130.4

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCC------------------------CeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLD------------------------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      --+.+.+|+++|+|+ ++++.+.+                        ++|.+||..+++.+..+..+            
T Consensus        22 ~l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------   88 (329)
T 3fvz_A           22 LPGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN------------   88 (329)
T ss_dssp             CCSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT------------
T ss_pred             ecCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC------------
Confidence            346799999999998 78887777                        47999999888876554322            


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce-eEeecc--------CCCCCCccceeecc-cceeEEEee
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL-NISRSK--------STTKPLKGSQSTSK-VNIRDAEME  145 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~  145 (250)
                      +......+++.|      +++++++...++.|++||..... .+..+.        .........++++| ++..+++..
T Consensus        89 ~~~~p~gia~d~------~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~  162 (329)
T 3fvz_A           89 LFYLPHGLSIDT------DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG  162 (329)
T ss_dssp             TCSSEEEEEECT------TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC
T ss_pred             ccCCceEEEECC------CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC
Confidence            234678899998      89988888889999999987542 222221        11223577899999 777776432


Q ss_pred             eeeecc---Ceeeeeecccc----------CccccEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCCcceecccccce
Q 025649          146 ILDQSG---GKRLHLDYSVG----------GHTAAASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDL  211 (250)
Q Consensus       146 ~~~~~~---~~~~~~~~~~~----------~h~~~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  211 (250)
                      ..+...   ......+..+.          ++......++++   |+ ++++++...+++|++||..++         +.
T Consensus       163 ~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d---~~~g~l~v~d~~~~~I~~~~~~~G---------~~  230 (329)
T 3fvz_A          163 YCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALV---PHLDQLCVADRENGRIQCFKTDTK---------EF  230 (329)
T ss_dssp             SSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEE---TTTTEEEEEETTTTEEEEEETTTC---------CE
T ss_pred             CCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEE---CCCCEEEEEECCCCEEEEEECCCC---------cE
Confidence            111111   01112222222          233447899999   77 888888888999999999976         33


Q ss_pred             eeee--eccCCceeEEEecCCCCCeEEE-------eeCCceEEEEeC
Q 025649          212 LIKN--INLNKKVNWLCTTPTESENLVV-------CDTSKVVKVYSI  249 (250)
Q Consensus       212 ~~~~--~~~~~~v~~~~~~~~~~~~l~s-------~~~d~~i~vw~~  249 (250)
                      +..+  ..+...+..+++.|  +..+.+       ...+..|++|++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~  275 (329)
T 3fvz_A          231 VREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNF  275 (329)
T ss_dssp             EEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEET
T ss_pred             EEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEc
Confidence            3333  24556778888876  322333       233457888885

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.60  E-value=8.6e-12  Score=94.03  Aligned_cols=204  Identities=8%  Similarity=0.021  Sum_probs=129.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC----CeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      |.+||.++++...... .+...+.+++++|++. ++++...+    +.|.+||..+++....+...           ...
T Consensus        68 i~~~d~~~~~~~~~~~-~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----------~~~  134 (333)
T 2dg1_A           68 IFKINPETKEIKRPFV-SHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-----------STA  134 (333)
T ss_dssp             EEEECTTTCCEEEEEE-CSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSS-----------SSC
T ss_pred             EEEEeCCCCcEEEEee-CCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccC-----------ccC
Confidence            6788888877665554 5677899999999998 77777666    68999999876654232211           023


Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeC------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee------
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKG------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME------  145 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  145 (250)
                      ..+.++++.|      +++++++...      .+.|..+|..+++.......  ......++++|+|+.+....      
T Consensus       135 ~~~~~i~~d~------~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~i  206 (333)
T 2dg1_A          135 YCIDDMVFDS------KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKVLWVTETTANRL  206 (333)
T ss_dssp             CCEEEEEECT------TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             CcccceEECC------CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCCCEEEEEeCCCCeE
Confidence            4688899998      8888777654      36677777765543322211  13467889999997554221      


Q ss_pred             -eeeecc-Ceeee-----eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc
Q 025649          146 -ILDQSG-GKRLH-----LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL  218 (250)
Q Consensus       146 -~~~~~~-~~~~~-----~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  218 (250)
                       .++... .....     ....+.++ ..+..++++   ++|+++++...++.|.+||...          ..+..+..+
T Consensus       207 ~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d---~~G~l~v~~~~~~~v~~~d~~g----------~~~~~~~~~  272 (333)
T 2dg1_A          207 HRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCID---SDDNLYVAMYGQGRVLVFNKRG----------YPIGQILIP  272 (333)
T ss_dssp             EEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEB---TTCCEEEEEETTTEEEEECTTS----------CEEEEEECT
T ss_pred             EEEEecCCCcCcccccceEEEecCCC-CCCCceEEC---CCCCEEEEEcCCCEEEEECCCC----------CEEEEEEcC
Confidence             222211 11111     11122233 467889999   8999888888889999999853          222333322


Q ss_pred             C------CceeEEEecCCCCCeEEEeeCC
Q 025649          219 N------KKVNWLCTTPTESENLVVCDTS  241 (250)
Q Consensus       219 ~------~~v~~~~~~~~~~~~l~s~~~d  241 (250)
                      .      ..+..++|.| |++.|+.++.+
T Consensus       273 ~~~~g~~~~~~~~~~~~-dg~~L~v~~~~  300 (333)
T 2dg1_A          273 GRDEGHMLRSTHPQFIP-GTNQLIICSND  300 (333)
T ss_dssp             TGGGTCSCBCCEEEECT-TSCEEEEEEEC
T ss_pred             CCccccccCcceEEECC-CCCEEEEEeCc
Confidence            2      2688899986 76666655444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.59  E-value=9.4e-14  Score=107.09  Aligned_cols=205  Identities=9%  Similarity=0.018  Sum_probs=126.5

Q ss_pred             EEEcccceeeeeeccCCCCC-----eeeEEEcCCCCeEEEEe-cCC--CeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649            4 IIDIRQHCLYKSLRAGHSSI-----CSSVQFIPWKPWEVISG-GLD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         4 iwd~~~~~~~~~l~~~h~~~-----v~~l~~~~~~~~~l~s~-s~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      ..|..+++.+..+. .+...     +..++|+|+|+ .|+.. ..+  ..|.+||+.+++...... +            
T Consensus        14 ~~d~~~g~~~~~l~-~~~~~~~~~~~~~~~~SpdG~-~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~------------   78 (396)
T 3c5m_A           14 FVDSDTQVKVTRLT-PTDIICHRNYFYQKCFTQDGK-KLLFAGDFDGNRNYYLLNLETQQAVQLTE-G------------   78 (396)
T ss_dssp             EECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTTEEEECCC-S------------
T ss_pred             eecCCCCcceEEEe-cCCCCccceeeecCcCCCCCC-EEEEEEecCCCceEEEEECCCCcEEEeec-C------------
Confidence            34778888888887 55444     78899999999 55554 333  478888988776433322 1            


Q ss_pred             CCCc-eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccc-------------------eeec
Q 025649           76 NPAF-VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS-------------------QSTS  135 (250)
Q Consensus        76 ~~~~-v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-------------------~~~~  135 (250)
                       ... ...+.|+|      ++++|+.++.++.|.+||+.+++.......+. .....                   ..++
T Consensus        79 -~~~~~~~~~~sp------dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~~~~~~~~~~~s  150 (396)
T 3c5m_A           79 -KGDNTFGGFIST------DERAFFYVKNELNLMKVDLETLEEQVIYTVDE-EWKGYGTWVANSDCTKLVGIEILKRDWQ  150 (396)
T ss_dssp             -SCBCTTTCEECT------TSSEEEEEETTTEEEEEETTTCCEEEEEECCT-TEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred             -CCCccccceECC------CCCEEEEEEcCCcEEEEECCCCCcEEEEeccc-ccCCCCCEEEeccCCccccccccccccC
Confidence             122 22367888      99999999999999999999876544333221 11111                   3556


Q ss_pred             ccceeEEE-----------eeeeeeccCeeeeeeccccCccccEEEEEeecCCC-CCcEEEEeeCC------CeEEEEec
Q 025649          136 KVNIRDAE-----------MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGND------KLVKVWDC  197 (250)
Q Consensus       136 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~~~l~s~~~d------~~i~iwd~  197 (250)
                      |+++.++.           +..++......    ..+..+...+..+.|+   | ++..|+..+.+      ..|.+||+
T Consensus       151 pdg~~~~~~~~~~~~~~~~l~~~d~~~g~~----~~~~~~~~~~~~~~~s---p~dg~~l~~~~~~~~~~~~~~l~~~d~  223 (396)
T 3c5m_A          151 PLTSWEKFAEFYHTNPTCRLIKVDIETGEL----EVIHQDTAWLGHPIYR---PFDDSTVGFCHEGPHDLVDARMWLVNE  223 (396)
T ss_dssp             CCCSHHHHHHHHHTCCCEEEEEEETTTCCE----EEEEEESSCEEEEEEE---TTEEEEEEEEECSCSSSCSCCCEEEET
T ss_pred             CCCcceeeeeeccCCCcceEEEEECCCCcE----EeeccCCcccccceEC---CCCCCEEEEEecCCCCCCCceEEEEEC
Confidence            66654431           11122211111    1122355678899999   8 78777665543      46888888


Q ss_pred             CCCcceecccccceeeeeecc--CCceeEEEecCCCCCeEEEeeCC-----ceEEEEeC
Q 025649          198 SRFQGVQTSINNDLLIKNINL--NKKVNWLCTTPTESENLVVCDTS-----KVVKVYSI  249 (250)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d-----~~i~vw~~  249 (250)
                      ..+.         . .....+  ...+..++|+| ||+.|+.++.+     +.|++||+
T Consensus       224 ~~~~---------~-~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~  271 (396)
T 3c5m_A          224 DGSN---------V-RKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANP  271 (396)
T ss_dssp             TSCC---------C-EESSCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECT
T ss_pred             CCCc---------e-eEeeccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEEC
Confidence            7652         1 112222  23577889998 88877766543     55999986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.59  E-value=8.1e-13  Score=109.63  Aligned_cols=216  Identities=6%  Similarity=-0.040  Sum_probs=134.9

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCe----------------EEEEEccCCCCccceecCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK----------------LVMWDFSKGRPNKIVNFGL   64 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~----------------v~iwd~~~~~~~~~~~~~~   64 (250)
                      +|++||+.+++.+.... .+ ..+..++|+|||+ .|+.++.++.                |++|++.+++....+....
T Consensus       152 ~i~v~d~~tg~~~~~~~-~~-~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~  228 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVL-ER-VKFSCMAWTHDGK-GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF  228 (710)
T ss_dssp             EEEEEETTTTEEEEEEE-EE-ECSCCEEECTTSS-EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC
T ss_pred             EEEEEECCCCCCCcccc-cC-cccceEEEEeCCC-EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc
Confidence            47899999998876433 22 2377899999999 6777776655                9999998776432222110


Q ss_pred             CCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC-----CCeEEEEeCCC------ce-eEeeccCCCCCCccce
Q 025649           65 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-----DGVVDVINIES------EL-NISRSKSTTKPLKGSQ  132 (250)
Q Consensus        65 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~------~~-~~~~~~~~~~~~~~~~  132 (250)
                      +         .++..+..+.|+|      ++++|+.++.     +..|.+||+.+      +. ....+.... .... .
T Consensus       229 ~---------~~~~~~~~~~~Sp------Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~-~~~~-~  291 (710)
T 2xdw_A          229 P---------DEPKWMGGAELSD------DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF-EGEY-D  291 (710)
T ss_dssp             T---------TCTTCEEEEEECT------TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-SSCE-E
T ss_pred             C---------CCCeEEEEEEEcC------CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCC-CcEE-E
Confidence            0         0234577899998      9999888764     67899999976      42 222222222 2222 3


Q ss_pred             eecccceeEEEeeeeee-----c--cCeeee--eeccccCccc--cEEEEEeecCCCCCcEEEEeeCCCe--EEEEecCC
Q 025649          133 STSKVNIRDAEMEILDQ-----S--GGKRLH--LDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKL--VKVWDCSR  199 (250)
Q Consensus       133 ~~~~~~~~~~~~~~~~~-----~--~~~~~~--~~~~~~~h~~--~v~~~~~~p~~~~~~~l~s~~~d~~--i~iwd~~~  199 (250)
                      .++|+|..++.....+.     .  ......  ....+..|..  .+..++|+   +++.++++...|+.  |.+||+.+
T Consensus       292 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~lv~~~~~~g~~~l~~~~~~~  368 (710)
T 2xdw_A          292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV---RSNFLVLCYLHDVKNTLQLHDLAT  368 (710)
T ss_dssp             EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE---TTTEEEEEEEETTEEEEEEEETTT
T ss_pred             EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE---cCCEEEEEEEECCEEEEEEEECCC
Confidence            58888887764322111     0  011110  1123333433  67888998   78888888888885  56667756


Q ss_pred             CcceecccccceeeeeeccCCceeEEEecCCCCCeEE-Eee---CCceEEEEeC
Q 025649          200 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV-VCD---TSKVVKVYSI  249 (250)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~---~d~~i~vw~~  249 (250)
                      +         ..+..+..+...+..+.++| ++..++ +.+   ..+.|++||+
T Consensus       369 g---------~~~~~l~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          369 G---------ALLKIFPLEVGSVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             C---------CEEEEECCCSSEEEEEECCT-TCSEEEEEEECSSCCCEEEEEET
T ss_pred             C---------CEEEecCCCCceEEEEecCC-CCCEEEEEEeCCCCCCEEEEEEC
Confidence            5         33334445667788888887 665544 322   3578999986

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.56  E-value=1.3e-12  Score=99.79  Aligned_cols=216  Identities=10%  Similarity=-0.037  Sum_probs=125.5

Q ss_pred             cEEEEcccceeeeeeccCC------CCCeeeEEEcCCCCeEEEEec-C-CCeEEEEEccCCCCccc-eecCCC-----CC
Q 025649            2 WQIIDIRQHCLYKSLRAGH------SSICSSVQFIPWKPWEVISGG-L-DSKLVMWDFSKGRPNKI-VNFGLP-----EN   67 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h------~~~v~~l~~~~~~~~~l~s~s-~-dg~v~iwd~~~~~~~~~-~~~~~~-----~~   67 (250)
                      |.+||+.+++.+.++. ..      ......++++|+|+ +|+++. . +++|.+||+.+++.+.. +..+..     ..
T Consensus        83 v~v~d~~t~~~~~~i~-~~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p  160 (361)
T 2oiz_A           83 VEVWDADKLTFEKEIS-LPPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQP  160 (361)
T ss_dssp             EEEEETTTCCEEEEEE-ECTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECT
T ss_pred             EEEEECcCCcEEEEEE-cCccccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcC
Confidence            7899999999888876 32      34577999999999 566654 3 68999999999887766 543210     00


Q ss_pred             CC-CC-CcccCCCceeEEecCC----------CcccC-----------CCCCEEEEEeCCCeEEEEeCCCceeE--eecc
Q 025649           68 NG-NA-GQCYNPAFVHAIAIPD----------ADMLD-----------KTNKICVVAKGDGVVDVINIESELNI--SRSK  122 (250)
Q Consensus        68 ~~-~~-~~~~~~~~v~~~~~~~----------~~~~~-----------~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~  122 (250)
                      .. .. ........+..+.+..          ...++           +++..++..+.++.+.++|+..+...  ....
T Consensus       161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~  240 (361)
T 2oiz_A          161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS  240 (361)
T ss_dssp             TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE
T ss_pred             CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc
Confidence            00 00 0000001111111110          00000           11234444556677777777543221  1110


Q ss_pred             CC---------CCCCccceeecccceeEEEeee--------------eeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649          123 ST---------TKPLKGSQSTSKVNIRDAEMEI--------------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER  179 (250)
Q Consensus       123 ~~---------~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  179 (250)
                      ..         .......++++|+++.++....              ....+....+.+.++..+.  +.+++|+   |+
T Consensus       241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~s---pd  315 (361)
T 2oiz_A          241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTID---QQ  315 (361)
T ss_dssp             SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEE---TT
T ss_pred             ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEEC---CC
Confidence            00         0012223788999877764322              1112334455666777666  8999999   89


Q ss_pred             CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC
Q 025649          180 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE  233 (250)
Q Consensus       180 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  233 (250)
                      |++|++++. +.|.+||..++..       +.+.....+......++++| +|.
T Consensus       316 g~~l~v~n~-~~v~v~D~~t~~l-------~~~~~i~~~G~~P~~~~~~p-~G~  360 (361)
T 2oiz_A          316 RNLMLTLDG-GNVNVYDISQPEP-------KLLRTIEGAAEASLQVQFHP-VGG  360 (361)
T ss_dssp             TTEEEEECS-SCEEEEECSSSSC-------EEEEEETTSCSSEEEEEECC-CSC
T ss_pred             CCEEEEeCC-CeEEEEECCCCcc-------eeeEEeccCCCCcEEEEecC-CCC
Confidence            999998887 9999999999611       22333346777788899987 664

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=2.3e-12  Score=97.07  Aligned_cols=210  Identities=8%  Similarity=-0.102  Sum_probs=136.0

Q ss_pred             CcEEEEcccceeeeeecc---C--CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649            1 MWQIIDIRQHCLYKSLRA---G--HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~---~--h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      +|.++|.++++....+..   +  .......+.+.. +. ++++...++.|.+||..+++.+..+..             
T Consensus        18 ~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~-lyv~~~~~~~v~viD~~t~~~~~~i~~-------------   82 (328)
T 3dsm_A           18 TLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GI-GWIVVNNSHVIFAIDINTFKEVGRITG-------------   82 (328)
T ss_dssp             EEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TE-EEEEEGGGTEEEEEETTTCCEEEEEEC-------------
T ss_pred             eEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CE-EEEEEcCCCEEEEEECcccEEEEEcCC-------------
Confidence            478999999988766520   1  223467787753 33 677777789999999999998887752             


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC----CCccceeecccceeEEEee----ee
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK----PLKGSQSTSKVNIRDAEME----IL  147 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~  147 (250)
                       ......+++++      +++..++...++.|.+||+.+++....+.....    .....+++ .++..+++..    ..
T Consensus        83 -~~~p~~i~~~~------~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v  154 (328)
T 3dsm_A           83 -FTSPRYIHFLS------DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRI  154 (328)
T ss_dssp             -CSSEEEEEEEE------TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEE
T ss_pred             -CCCCcEEEEeC------CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEE
Confidence             24578888877      775444444899999999999887765544321    14556677 4444444211    01


Q ss_pred             eeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC----------CeEEEEecCCCcceecccccceeeeeec
Q 025649          148 DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND----------KLVKVWDCSRFQGVQTSINNDLLIKNIN  217 (250)
Q Consensus       148 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~  217 (250)
                      ...+....+.+..+... .....++++   ++|++++++..+          +.|.++|..++         ++.....-
T Consensus       155 ~viD~~t~~~~~~i~~g-~~p~~i~~~---~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------~v~~~~~~  221 (328)
T 3dsm_A          155 LKIDTETDKVVDELTIG-IQPTSLVMD---KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---------TVEKQFKF  221 (328)
T ss_dssp             EEEETTTTEEEEEEECS-SCBCCCEEC---TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---------EEEEEEEC
T ss_pred             EEEECCCCeEEEEEEcC-CCccceEEc---CCCCEEEEECCCccCCccccCCceEEEEECCCC---------eEEEEEec
Confidence            11111222223333322 234678888   889988877655          79999999987         33323221


Q ss_pred             -cCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          218 -LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       218 -~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                       ....+..++++| +++.|+++..  .|.+||.
T Consensus       222 ~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~  251 (328)
T 3dsm_A          222 KLGDWPSEVQLNG-TRDTLYWINN--DIWRMPV  251 (328)
T ss_dssp             CTTCCCEEEEECT-TSCEEEEESS--SEEEEET
T ss_pred             CCCCCceeEEEec-CCCEEEEEcc--EEEEEEC
Confidence             234688999998 7777777654  7888886

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.53  E-value=2.5e-11  Score=92.89  Aligned_cols=217  Identities=9%  Similarity=-0.041  Sum_probs=132.4

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec----------CCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG----------LDSKLVMWDFSKGRPNKIVNFGLPENNGN   70 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~   70 (250)
                      +|.++|..+++.+.++. ....+  .++++||++ .++.+.          .++.|.+||..+.+.+..+..+.+..   
T Consensus        48 ~v~v~D~~t~~~~~~i~-~g~~p--~i~~spDg~-~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~---  120 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVN-GGFLP--NPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR---  120 (373)
T ss_pred             EEEEEECCCCeEEEEec-CCCCC--CeEECCCCC-EEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc---
Confidence            47899999999998888 44444  999999999 555553          36789999999888877776431000   


Q ss_pred             CCcccCCCceeEEecCCCcccCCCCCEEEEEeC--CCeEEEEeCCCceeEee-ccCCCC------CCccceeecccceeE
Q 025649           71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG--DGVVDVINIESELNISR-SKSTTK------PLKGSQSTSKVNIRD  141 (250)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~  141 (250)
                      .   .....-..++++|      ++++|+++..  ++.|.++| .+++.... +.....      ..-.-+.++++|+.+
T Consensus       121 ~---~~g~~p~~~~~sp------DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~  190 (373)
T 2mad_H          121 F---DVGPYSWMNANTP------NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLA  190 (373)
T ss_pred             c---ccCCCccceEECC------CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEE
Confidence            0   0001235788998      9999998874  57899999 98887766 543211      000112333444333


Q ss_pred             EEeeeeeeccC--------------------------------------------eeeeeeccccC----------cccc
Q 025649          142 AEMEILDQSGG--------------------------------------------KRLHLDYSVGG----------HTAA  167 (250)
Q Consensus       142 ~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~----------h~~~  167 (250)
                      .. .. .....                                            ...+.+..+.-          ....
T Consensus       191 ~v-d~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g  268 (373)
T 2mad_H          191 KT-DH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGG  268 (373)
T ss_pred             EE-EC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCc
Confidence            21 00 00000                                            00000001100          0111


Q ss_pred             EEEEEeecCCCCCcEEEEeeC----------CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC-eEE
Q 025649          168 ASCVAFSMFGERGKYLISGGN----------DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLV  236 (250)
Q Consensus       168 v~~~~~~p~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~  236 (250)
                      ...++++   ++++.+..+..          .+.|.++|..+.         +.+..+ ........++|+| ||+ .++
T Consensus       269 ~~~~~~s---~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---------~vv~~i-~~g~~p~~i~~s~-Dg~~~l~  334 (373)
T 2mad_H          269 WQQVAYL---KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------QTSSQI-SLGHDVDAISVAQ-DGGPDLY  334 (373)
T ss_pred             eEeEEEC---CCCCEEEEEeccCCcccccCCCCeEEEEECCCC---------EEEEEE-ECCCCcCeEEECC-CCCeEEE
Confidence            2336677   77776666542          357999999987         443333 3344688999998 888 777


Q ss_pred             Eee-CCceEEEEeCC
Q 025649          237 VCD-TSKVVKVYSIS  250 (250)
Q Consensus       237 s~~-~d~~i~vw~~~  250 (250)
                      ++. .++.|.+||+.
T Consensus       335 v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          335 ALSAGTEVLHIYDAG  349 (373)
T ss_pred             EEcCCCCeEEEEECC
Confidence            777 58999999963

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.52  E-value=2.8e-12  Score=106.18  Aligned_cols=197  Identities=7%  Similarity=-0.166  Sum_probs=124.2

Q ss_pred             CCCCCeeeEEEcCCCCeEEE-----EecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649           19 GHSSICSSVQFIPWKPWEVI-----SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK   93 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~-----s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (250)
                      +|...+..++|||||+ +|+     .|+.+.+|++||+.+++.+..-...             ......++|+|      
T Consensus       118 ~~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-------------~~~~~~~~wsp------  177 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE-------------GGKYATPKWTP------  177 (695)
T ss_dssp             SSCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS-------------CCTTCCCEECT------
T ss_pred             CCCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcCCcccC-------------cccccceEEec------
Confidence            4555789999999999 677     4555679999999998764111111             11126789998      


Q ss_pred             CCCEEEEEeCCCe-------------EEEEeCCCceeE--eeccC-CCCCCccceeecccceeEEEeeeee-----ecc-
Q 025649           94 TNKICVVAKGDGV-------------VDVINIESELNI--SRSKS-TTKPLKGSQSTSKVNIRDAEMEILD-----QSG-  151 (250)
Q Consensus        94 ~~~~l~~~~~d~~-------------i~~~d~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-  151 (250)
                      +++.|+.++.|..             |++|++.++...  ..... .....+..+.++|||++++......     .+. 
T Consensus       178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~  257 (695)
T 2bkl_A          178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWK  257 (695)
T ss_dssp             TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEE
T ss_pred             CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEE
Confidence            9999999988776             999999986521  22222 2224677899999999988432211     111 


Q ss_pred             -CeeeeeeccccCccccEEEEEeecCCCCCcEEEEee---CCCeEEEEecCCCcceecccccceeeeeecc--CCceeEE
Q 025649          152 -GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINL--NKKVNWL  225 (250)
Q Consensus       152 -~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~  225 (250)
                       .... ....+..+...+....+.    +|.+++.+.   .++.|.+||+.++...       ....+..+  ...+..+
T Consensus       258 ~~~~~-~~~~l~~~~~~~~~~~~~----~g~l~~~s~~~~~~~~l~~~d~~~~~~~-------~~~~l~~~~~~~~l~~~  325 (695)
T 2bkl_A          258 RPGEK-DFRLLVKGVGAKYEVHAW----KDRFYVLTDEGAPRQRVFEVDPAKPARA-------SWKEIVPEDSSASLLSV  325 (695)
T ss_dssp             CTTCS-SCEEEEECSSCCEEEEEE----TTEEEEEECTTCTTCEEEEEBTTBCSGG-------GCEEEECCCSSCEEEEE
T ss_pred             cCCCC-ceEEeecCCCceEEEEec----CCcEEEEECCCCCCCEEEEEeCCCCCcc-------CCeEEecCCCCCeEEEE
Confidence             1011 122333344445555554    445555544   2579999999876321       11223333  3457778


Q ss_pred             EecCCCCCeEEEeeCCceEEEEeC
Q 025649          226 CTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       226 ~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +++  ++.++++...|+..+||.+
T Consensus       326 ~~~--~~~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          326 SIV--GGHLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             EEE--TTEEEEEEEETTEEEEEEE
T ss_pred             EEE--CCEEEEEEEECCEEEEEEE
Confidence            886  5678888899999888854

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.51  E-value=2.1e-12  Score=107.17  Aligned_cols=198  Identities=6%  Similarity=-0.139  Sum_probs=124.1

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCC-C----eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLD-S----KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK   93 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~d-g----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (250)
                      +|...+..++|||||+ +|+.++.+ |    +|++||+.+++.+.... .             ...+.+++|+|      
T Consensus       122 ~~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~-------------~~~~~~~~wsp------  180 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELPDVL-E-------------RVKFSCMAWTH------  180 (710)
T ss_dssp             TSCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEEEEE-E-------------EECSCCEEECT------
T ss_pred             CCCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCcccc-c-------------CcccceEEEEe------
Confidence            3445688999999999 67655443 2    89999999887654322 1             12256799998      


Q ss_pred             CCCEEEEEeCCCe----------------EEEEeCCCceeE--eeccCC-CCCCccceeecccceeEEEeeeee------
Q 025649           94 TNKICVVAKGDGV----------------VDVINIESELNI--SRSKST-TKPLKGSQSTSKVNIRDAEMEILD------  148 (250)
Q Consensus        94 ~~~~l~~~~~d~~----------------i~~~d~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------  148 (250)
                      |++.|+.++.++.                |++|++.+++..  ...... .......+.++|||++++......      
T Consensus       181 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~  260 (710)
T 2xdw_A          181 DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR  260 (710)
T ss_dssp             TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred             CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence            9999999887765                999999886532  111221 224467899999999988432211      


Q ss_pred             ecc--Cee------ee-eeccccCccccEEEEEeecCCCCCcEEEEeeCC----CeEEEEecCCCcceecccccceeeee
Q 025649          149 QSG--GKR------LH-LDYSVGGHTAAASCVAFSMFGERGKYLISGGND----KLVKVWDCSRFQGVQTSINNDLLIKN  215 (250)
Q Consensus       149 ~~~--~~~------~~-~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~  215 (250)
                      ...  ...      .. ....+..+...+.. .|+   ++|..|+..+.+    +.|.+||+.++..       .....+
T Consensus       261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-------~~~~~l  329 (710)
T 2xdw_A          261 LWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVT---NEGTVFTFKTNRHSPNYRLINIDFTDPEE-------SKWKVL  329 (710)
T ss_dssp             EEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEE---EETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEE
T ss_pred             EEEEECcccccccCCccceEEeeCCCCcEEE-EEe---ccCCEEEEEECCCCCCCEEEEEeCCCCCc-------ccceec
Confidence            110  111      10 22334444444444 467   677766655442    3699999987631       112334


Q ss_pred             eccCC--ceeEEEecCCCCCeEEEeeCCceE--EEEeC
Q 025649          216 INLNK--KVNWLCTTPTESENLVVCDTSKVV--KVYSI  249 (250)
Q Consensus       216 ~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i--~vw~~  249 (250)
                      ..|..  .+..+.|++ ++.++++...|+..  .+|++
T Consensus       330 ~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          330 VPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDL  366 (710)
T ss_dssp             ECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEET
T ss_pred             cCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEEC
Confidence            44443  577788885 67778888888855  44554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.51  E-value=2.4e-12  Score=97.61  Aligned_cols=198  Identities=7%  Similarity=-0.074  Sum_probs=122.1

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC---------------------------CCeEEEEEccCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---------------------------DSKLVMWDFSKG   54 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~---------------------------dg~v~iwd~~~~   54 (250)
                      |.+||+.+++...... . .. +..++|+|+|+ .|+.++.                           ...|.+||+.++
T Consensus        87 l~~~~~~~g~~~~l~~-~-~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~  162 (347)
T 2gop_A           87 IWVADLETLSSKKILE-A-KN-IRSLEWNEDSR-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE  162 (347)
T ss_dssp             EEEEETTTTEEEEEEE-E-SE-EEEEEECTTSS-EEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred             EEEEECCCCceEEEEc-C-CC-ccceeECCCCC-EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence            6678888887765554 3 33 99999999999 5666653                           257899999877


Q ss_pred             CCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC-------eEEEEeCCCceeEeeccCCCCC
Q 025649           55 RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-------VVDVINIESELNISRSKSTTKP  127 (250)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~-------~i~~~d~~~~~~~~~~~~~~~~  127 (250)
                      +.+..+.              .+ .+..+.|+|      ++ +++++..++       ...+|.+.+++...... .  .
T Consensus       163 ~~~~~l~--------------~~-~~~~~~~sp------dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~-~--~  217 (347)
T 2gop_A          163 EVIEEFE--------------KP-RFSSGIWHR------DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFE-K--V  217 (347)
T ss_dssp             EEEEEEE--------------EE-TTCEEEEET------TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEE-E--E
T ss_pred             eEEeeec--------------CC-CcccccCCC------Ce-EEEEEecccccccccccccEEEeCCCceEEecc-C--c
Confidence            6534443              12 467788998      88 777775542       33444333444322221 1  2


Q ss_pred             CccceeecccceeEEEeeeee---------eccCeeeeeeccccCccccEEE-EEeecCCCCCcEEEEeeCCCeEEEEec
Q 025649          128 LKGSQSTSKVNIRDAEMEILD---------QSGGKRLHLDYSVGGHTAAASC-VAFSMFGERGKYLISGGNDKLVKVWDC  197 (250)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~h~~~v~~-~~~~p~~~~~~~l~s~~~d~~i~iwd~  197 (250)
                      .+.  .++|+|+.++......         .......+.......+...+.. +.|+    ++ ++++++.++.++|| +
T Consensus       218 ~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~~~~~~s----dg-~~~~~~~~~~~~l~-~  289 (347)
T 2gop_A          218 SFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKD----GK-VYFTLFEEGSVNLY-I  289 (347)
T ss_dssp             SEE--EEEECSSCEEEEECCSSSCCCSSCEEEEECSSCEEESSTTCCSEEEEEEEET----TE-EEEEEEETTEEEEE-E
T ss_pred             cee--eECCCCCEEEEEEccccCCccccceEEEECCCceEeccccCCcccCCccEEc----Cc-EEEEEecCCcEEEE-E
Confidence            223  3399999887433211         1110111222233455667775 7775    56 88899999999999 8


Q ss_pred             CCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE-EEEeC
Q 025649          198 SRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV-KVYSI  249 (250)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i-~vw~~  249 (250)
                      .++         +. .....+...|..++|+|   .++++++.++.. .||.+
T Consensus       290 ~~g---------~~-~~~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          290 WDG---------EI-KPIAKGRHWIMGFDVDE---IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             ESS---------SE-EEEECSSSEEEEEEESS---SEEEEEECSSSCCEEEEE
T ss_pred             cCC---------ce-EEEecCCCeEEeeeeeC---cEEEEEcCCCChHHheEe
Confidence            743         22 23344567889999986   577777766654 67754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.50  E-value=7e-11  Score=88.20  Aligned_cols=213  Identities=12%  Similarity=0.052  Sum_probs=133.3

Q ss_pred             cEEEEcccceeeeeecc----CCCCCeeeEEEcCC-CCeEEEEecCCCeEEEEEccCCCCccc-eecCCCCCCCCCCccc
Q 025649            2 WQIIDIRQHCLYKSLRA----GHSSICSSVQFIPW-KPWEVISGGLDSKLVMWDFSKGRPNKI-VNFGLPENNGNAGQCY   75 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~----~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~   75 (250)
                      |.+||..+++.. .+..    ++...+.+++++++ +. ++++.. .+.|.+||.. ++.... ....    .     ..
T Consensus        48 i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~-~~~l~~~d~~-g~~~~~~~~~~----~-----~~  114 (314)
T 1pjx_A           48 ILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQ-LFVADM-RLGLLVVQTD-GTFEEIAKKDS----E-----GR  114 (314)
T ss_dssp             EEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSE-EEEEET-TTEEEEEETT-SCEEECCSBCT----T-----SC
T ss_pred             EEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCc-EEEEEC-CCCEEEEeCC-CCEEEEEeccC----C-----Cc
Confidence            677887777653 3320    25567899999999 75 555544 4478899987 654322 1100    0     00


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCC---------------CeEEEEeCCCceeEeeccCCCCCCccceeec----c
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGD---------------GVVDVINIESELNISRSKSTTKPLKGSQSTS----K  136 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d---------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~  136 (250)
                      ....+.++++.+      +++++++...+               +.|..||.. ++.......  ......++++    |
T Consensus       115 ~~~~~~~i~~d~------~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~~~~i~~~~~~d~  185 (314)
T 1pjx_A          115 RMQGCNDCAFDY------EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQFPNGIAVRHMNDG  185 (314)
T ss_dssp             BCBCCCEEEECT------TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ESSEEEEEEEECTTS
T ss_pred             cccCCcCEEECC------CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CCCcceEEEecccCC
Confidence            123578899988      88888777655               578888876 443322211  1345678889    9


Q ss_pred             cceeEEEee-------eeeec-cCe--eeeeeccccCcc-ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec
Q 025649          137 VNIRDAEME-------ILDQS-GGK--RLHLDYSVGGHT-AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT  205 (250)
Q Consensus       137 ~~~~~~~~~-------~~~~~-~~~--~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  205 (250)
                      +++.+....       .++.. ...  ..+....+.++. ..+..++++   ++|+++++...++.|.+||..++     
T Consensus       186 dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d---~~G~l~v~~~~~~~i~~~d~~~g-----  257 (314)
T 1pjx_A          186 RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD---EDNNLLVANWGSSHIEVFGPDGG-----  257 (314)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB---TTCCEEEEEETTTEEEEECTTCB-----
T ss_pred             CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC---CCCCEEEEEcCCCEEEEEcCCCC-----
Confidence            987554221       12211 111  111233344444 567889999   89998888878899999999865     


Q ss_pred             ccccceeeeeeccCCceeEEEecCCCCCeE-EEeeCCceEEEEeC
Q 025649          206 SINNDLLIKNINLNKKVNWLCTTPTESENL-VVCDTSKVVKVYSI  249 (250)
Q Consensus       206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~vw~~  249 (250)
                          +.+.....+...+.++++.+ +++.| ++...++.|..|++
T Consensus       258 ----~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          258 ----QPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             ----SCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEEC
T ss_pred             ----cEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEeC
Confidence                33334444557789999976 78744 45556688988885

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.50  E-value=1.4e-11  Score=98.97  Aligned_cols=185  Identities=12%  Similarity=0.077  Sum_probs=130.2

Q ss_pred             CCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEE
Q 025649           31 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI  110 (250)
Q Consensus        31 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~  110 (250)
                      |.+. ++++...+++|.++|..+++.+..+..+              ..++.+.++|      +++++++++.|+.|.+|
T Consensus       165 ~~~~-~~V~~~~~~~V~viD~~t~~v~~~i~~g--------------~~p~~v~~Sp------DGr~lyv~~~dg~V~vi  223 (567)
T 1qks_A          165 LENL-FSVTLRDAGQIALIDGSTYEIKTVLDTG--------------YAVHISRLSA------SGRYLFVIGRDGKVNMI  223 (567)
T ss_dssp             GGGE-EEEEETTTTEEEEEETTTCCEEEEEECS--------------SCEEEEEECT------TSCEEEEEETTSEEEEE
T ss_pred             CCce-EEEEeCCCCeEEEEECCCCeEEEEEeCC--------------CCccceEECC------CCCEEEEEcCCCeEEEE
Confidence            4444 7888899999999999999998888755              4578999999      99999999999999999


Q ss_pred             eCC--CceeEeeccCCCCCCccceeec----ccceeEEEeeeeeec----cCeeeeeeccccC----------ccc-cEE
Q 025649          111 NIE--SELNISRSKSTTKPLKGSQSTS----KVNIRDAEMEILDQS----GGKRLHLDYSVGG----------HTA-AAS  169 (250)
Q Consensus       111 d~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----------h~~-~v~  169 (250)
                      |+.  +++....+...  .....++++    |||++++....+...    +....+.+..+..          |.. .+.
T Consensus       224 D~~~~t~~~v~~i~~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva  301 (567)
T 1qks_A          224 DLWMKEPTTVAEIKIG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA  301 (567)
T ss_dssp             ETTSSSCCEEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred             ECCCCCCcEeEEEecC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceE
Confidence            996  66666655543  456789999    699998854333221    2222333333221          222 577


Q ss_pred             EEEeecCCCCC-cEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee-CCceEEEE
Q 025649          170 CVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVY  247 (250)
Q Consensus       170 ~~~~~p~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw  247 (250)
                      .+..+   +++ .++++...+|.|.++|......        +.............+.|+| +++++++++ .++.|.++
T Consensus       302 ~i~~s---~~~~~~vv~~~~~g~v~~vd~~~~~~--------~~v~~i~~~~~~~d~~~~p-dgr~~~va~~~sn~V~Vi  369 (567)
T 1qks_A          302 AILAS---HYRPEFIVNVKETGKILLVDYTDLNN--------LKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVI  369 (567)
T ss_dssp             EEEEC---SSSSEEEEEETTTTEEEEEETTCSSE--------EEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEE
T ss_pred             EEEEc---CCCCEEEEEecCCCeEEEEecCCCcc--------ceeeeeeccccccCceECC-CCCEEEEEeCCCCeEEEE
Confidence            88888   554 4556666789999999987532        1122233445566788997 888876654 67889999


Q ss_pred             eCC
Q 025649          248 SIS  250 (250)
Q Consensus       248 ~~~  250 (250)
                      |+.
T Consensus       370 D~~  372 (567)
T 1qks_A          370 DTK  372 (567)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            863

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.47  E-value=4.1e-10  Score=83.31  Aligned_cols=208  Identities=6%  Similarity=-0.090  Sum_probs=135.3

Q ss_pred             cEEEEcccceeeee-eccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            2 WQIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         2 i~iwd~~~~~~~~~-l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      |.+||.. ++.... +. .+...+.++++++++. ++++...++.|..||.. ++ ...+...           .....+
T Consensus        38 v~~~d~~-~~~~~~~~~-~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~-~~~~~~~-----------~~~~~~  101 (299)
T 2z2n_A           38 ISCINLD-GKITEYPLP-TPDAKVMCLTISSDGE-VWFTENAANKIGRITKK-GI-IKEYTLP-----------NPDSAP  101 (299)
T ss_dssp             EEEECTT-CCEEEEECS-STTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC-EEEEECS-----------STTCCE
T ss_pred             EEEEcCC-CCeEEecCC-cccCceeeEEECCCCC-EEEeCCCCCeEEEECCC-Cc-EEEEeCC-----------CcCCCc
Confidence            5677766 443322 22 3456789999999998 77777778899999975 33 2233211           013467


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeeeccCee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQSGGKR  154 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  154 (250)
                      .++++.|      +++++++...++.|..||. +++............+..++++++|..+++.      ..++. .. .
T Consensus       102 ~~i~~~~------~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-~  172 (299)
T 2z2n_A          102 YGITEGP------NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SG-D  172 (299)
T ss_dssp             EEEEECT------TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-C
T ss_pred             eeeEECC------CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC-c
Confidence            8899988      8888888777899999999 5444332222233567889999998777632      11222 11 1


Q ss_pred             eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceee-eeeccCCceeEEEecCCCCC
Q 025649          155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI-KNINLNKKVNWLCTTPTESE  233 (250)
Q Consensus       155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~  233 (250)
                      ... ..+..+...+.+++++   ++|+++++...++.|.+||. ++.         ... ....+...+..+++.+ +|+
T Consensus       173 ~~~-~~~~~~~~~~~~i~~~---~~g~l~v~~~~~~~i~~~~~-~g~---------~~~~~~~~~~~~~~~i~~~~-~g~  237 (299)
T 2z2n_A          173 ITE-FKIPTPASGPVGITKG---NDDALWFVEIIGNKIGRITT-SGE---------ITEFKIPTPNARPHAITAGA-GID  237 (299)
T ss_dssp             EEE-EECSSTTCCEEEEEEC---TTSSEEEEETTTTEEEEECT-TCC---------EEEEECSSTTCCEEEEEECS-TTC
T ss_pred             EEE-eeCCCCCCcceeEEEC---CCCCEEEEccCCceEEEECC-CCc---------EEEEECCCCCCCceeEEECC-CCC
Confidence            111 1123344568899999   88888887777889999998 542         111 1223446788999987 777


Q ss_pred             eEEEeeCCceEEEEeC
Q 025649          234 NLVVCDTSKVVKVYSI  249 (250)
Q Consensus       234 ~l~s~~~d~~i~vw~~  249 (250)
                      ++++...++.|..||.
T Consensus       238 l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          238 LWFTEWGANKIGRLTS  253 (299)
T ss_dssp             EEEEETTTTEEEEEET
T ss_pred             EEEeccCCceEEEECC
Confidence            6666556788888874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.47  E-value=2.5e-11  Score=88.67  Aligned_cols=192  Identities=8%  Similarity=-0.030  Sum_probs=121.7

Q ss_pred             CeeeEEEcCCCCeEEE-EecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           23 ICSSVQFIPWKPWEVI-SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      ...++++++++. +++ +.+.++.|.+||..+.... .+...            ....+.++++.+      +++++++.
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~-~~~~~------------~~~~p~~i~~~~------~g~l~v~~   84 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTT-VLPFN------------GLYQPQGLAVDG------AGTVYVTD   84 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----E-ECCCC------------SCCSCCCEEECT------TCCEEEEE
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccc-eEeeC------------CcCCcceeEECC------CCCEEEEc
Confidence            678999999998 777 6578899999997654422 11111            124567888887      88866665


Q ss_pred             eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccCeeeeeeccccCccccEEEEEeecCCC
Q 025649          102 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE  178 (250)
Q Consensus       102 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  178 (250)
                      . ++.|.+||........ ...........++++++|+.+++..   ......................+.+++++   +
T Consensus        85 ~-~~~i~~~d~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~---~  159 (270)
T 1rwi_B           85 F-NNRVVTLAAGSNNQTV-LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD---N  159 (270)
T ss_dssp             T-TTEEEEECTTCSCCEE-CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC---T
T ss_pred             C-CCEEEEEeCCCceEee-eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe---C
Confidence            5 8899999988754432 2222224678899999998666321   11111111111111112223456789999   8


Q ss_pred             CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          179 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       179 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +|+++++...++.|.+||.....         .......+...+..+++.+ +|.++++...++.|.+|+.
T Consensus       160 ~g~l~v~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~  220 (270)
T 1rwi_B          160 SGNVYVTDTDNNRVVKLEAESNN---------QVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLA  220 (270)
T ss_dssp             TCCEEEEEGGGTEEEEECTTTCC---------EEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECT
T ss_pred             CCCEEEEECCCCEEEEEecCCCc---------eEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcC
Confidence            88888887778999999988752         2112222335678899987 7777777767888999975

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.47  E-value=8.7e-12  Score=103.23  Aligned_cols=212  Identities=10%  Similarity=-0.073  Sum_probs=125.7

Q ss_pred             CcEEEEcccceeeeeeccCCCCC--eeeEEEcCCCCeEEEEecCCCe-------------EEEEEccCCCCccceecCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSI--CSSVQFIPWKPWEVISGGLDSK-------------LVMWDFSKGRPNKIVNFGLP   65 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~--v~~l~~~~~~~~~l~s~s~dg~-------------v~iwd~~~~~~~~~~~~~~~   65 (250)
                      +|++||+.+++.+.  . .+...  ...++|+|||+ .|+.++.|..             |++|++.+++....+....+
T Consensus       148 ~i~v~dl~tg~~~~--~-~~~~~~~~~~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~  223 (695)
T 2bkl_A          148 VLHVIDVDSGEWSK--V-DVIEGGKYATPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT  223 (695)
T ss_dssp             EEEEEETTTCCBCS--S-CCBSCCTTCCCEECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC
T ss_pred             EEEEEECCCCCCcC--C-cccCcccccceEEecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC
Confidence            48999999988751  1 12222  26899999999 7888877765             99999988764322221100


Q ss_pred             CCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC----eEEEEeCCCceeEeeccCCCCCCccceeecccceeE
Q 025649           66 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG----VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD  141 (250)
Q Consensus        66 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (250)
                               .++..+.++.++|      +|++|+.++.++    .|.++|..++....... .. .......+ ++|. +
T Consensus       224 ---------~~~~~~~~~~~Sp------DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~-~~~~~~~~-~~g~-l  284 (695)
T 2bkl_A          224 ---------GDPTTFLQSDLSR------DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK-GV-GAKYEVHA-WKDR-F  284 (695)
T ss_dssp             ---------CCTTCEEEEEECT------TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE-CS-SCCEEEEE-ETTE-E
T ss_pred             ---------CCCEEEEEEEECC------CCCEEEEEEeCCCCceEEEEEcCCCCceEEeec-CC-CceEEEEe-cCCc-E
Confidence                     0235678999999      999988887665    77777765554332222 21 22333344 5666 4


Q ss_pred             EEeeeeee-------ccCeeeee--eccccCc--cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC-Ccceeccccc
Q 025649          142 AEMEILDQ-------SGGKRLHL--DYSVGGH--TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR-FQGVQTSINN  209 (250)
Q Consensus       142 ~~~~~~~~-------~~~~~~~~--~~~~~~h--~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~  209 (250)
                      +.....+.       ........  ...+..+  ...+..++++    ++.++++...|+..+||.+.. +         
T Consensus       285 ~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~----~~~lv~~~~~dg~~~l~~~~~~g---------  351 (695)
T 2bkl_A          285 YVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV----GGHLSLEYLKDATSEVRVATLKG---------  351 (695)
T ss_dssp             EEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE----TTEEEEEEEETTEEEEEEEETTC---------
T ss_pred             EEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE----CCEEEEEEEECCEEEEEEEeCCC---------
Confidence            42222110       01111110  1122222  4457788887    567889999999888886652 3         


Q ss_pred             ceeeeeecc-CCceeEEEecCCCCCeEE-E---eeCCceEEEEeC
Q 025649          210 DLLIKNINL-NKKVNWLCTTPTESENLV-V---CDTSKVVKVYSI  249 (250)
Q Consensus       210 ~~~~~~~~~-~~~v~~~~~~~~~~~~l~-s---~~~d~~i~vw~~  249 (250)
                      .....+..+ ...+..+.++| +++.++ +   ....+.|++||+
T Consensus       352 ~~~~~l~~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~  395 (695)
T 2bkl_A          352 KPVRTVQLPGVGAASNLMGLE-DLDDAYYVFTSFTTPRQIYKTSV  395 (695)
T ss_dssp             CEEEECCCSSSSEECCCBSCT-TCSEEEEEEEETTEEEEEEEEET
T ss_pred             CeeEEecCCCCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEEC
Confidence            222233333 55677788887 666555 2   234578999986

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.45  E-value=2.7e-10  Score=88.31  Aligned_cols=211  Identities=12%  Similarity=0.039  Sum_probs=132.8

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      |++||+++++...... .. .... ++|+|++. .|+++..++  .|.+++...+.....+....         ......
T Consensus       154 I~~id~~~g~~~~~~~-~~-~~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~---------~~~~~~  220 (409)
T 3hrp_A          154 VRLISVDDNKVTTVHP-GF-KGGK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASGWAPTRIGQLG---------STFSGK  220 (409)
T ss_dssp             EEEEETTTTEEEEEEE-TC-CBCB-CEECTTSS-EEEEEBSSTTCEEEEEEGGGTTCEEEEEECC---------TTSCSC
T ss_pred             EEEEECCCCEEEEeec-cC-CCCc-eeEecCCC-cEEEEecCCCceEEEEEcCCCceeEEeeecc---------chhcCC
Confidence            7889988877765555 32 2333 99999998 677777655  78889887665433331000         001245


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEee----ccCCCCCCcc-ceeeccc-ceeEEEe------eee
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR----SKSTTKPLKG-SQSTSKV-NIRDAEM------EIL  147 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~~~~~-~~~~~~~-~~~~~~~------~~~  147 (250)
                      .++++++|      ++..|+++..++.|+.||..++.....    .......... .++++|+ +.++++.      ..+
T Consensus       221 p~~iav~p------~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~  294 (409)
T 3hrp_A          221 IGAVALDE------TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKI  294 (409)
T ss_dssp             CCBCEECT------TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cEEEEEeC------CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEE
Confidence            67888887      666666677889999999987654332    1111111112 8999995 5555431      111


Q ss_pred             eeccCeeeeeeccccCc---------------cccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCcceecccccce
Q 025649          148 DQSGGKRLHLDYSVGGH---------------TAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDL  211 (250)
Q Consensus       148 ~~~~~~~~~~~~~~~~h---------------~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~  211 (250)
                      +.. .. .   ..+.++               -.....++++   ++|+++++-+ .+++|+.||+.++..         
T Consensus       295 ~~~-g~-~---~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d---~dG~lyvad~~~~~~I~~~~~~~G~v---------  357 (409)
T 3hrp_A          295 TPD-GE-C---EWFCGSATQKTVQDGLREEALFAQPNGMTVD---EDGNFYIVDGFKGYCLRKLDILDGYV---------  357 (409)
T ss_dssp             CTT-CC-E---EEEEECTTCCSCBCEEGGGCBCSSEEEEEEC---TTCCEEEEETTTTCEEEEEETTTTEE---------
T ss_pred             ecC-CC-E---EEEEeCCCCCCcCCCcccccEeCCCeEEEEe---CCCCEEEEeCCCCCEEEEEECCCCEE---------
Confidence            111 11 1   111111               2347899999   8999888888 899999999877632         


Q ss_pred             eeeeecc---------------CCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          212 LIKNINL---------------NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       212 ~~~~~~~---------------~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                       ....++               -..+..+++.+ ++.++++-..++.|+.++++
T Consensus       358 -~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          358 -STVAGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             -EEEEECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEEC
T ss_pred             -EEEeCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEeC
Confidence             122222               24588899997 68777777788899988764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.45  E-value=2.7e-12  Score=97.83  Aligned_cols=143  Identities=9%  Similarity=-0.037  Sum_probs=99.5

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      .+.. |+.|+|  ++. .|+++ .++.|++||+++.........             +...+.++.+.+      .  .+
T Consensus        86 ~lp~-V~~l~f--d~~-~L~v~-~~~~l~v~dv~sl~~~~~~~~-------------~~~~v~~i~~~~------p--~~  139 (388)
T 1xip_A           86 EIPD-VIFVCF--HGD-QVLVS-TRNALYSLDLEELSEFRTVTS-------------FEKPVFQLKNVN------N--TL  139 (388)
T ss_dssp             ECTT-EEEEEE--ETT-EEEEE-ESSEEEEEESSSTTCEEEEEE-------------CSSCEEEEEECS------S--EE
T ss_pred             eCCC-eeEEEE--CCC-EEEEE-cCCcEEEEEchhhhccCccce-------------eecceeeEEecC------C--CE
Confidence            3566 999999  777 78888 889999999987654433321             234566666654      2  28


Q ss_pred             EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCC
Q 025649           99 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE  178 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  178 (250)
                      +++..||.|.+||+.++...                                            .+...|+|++|+   |
T Consensus       140 av~~~dG~L~v~dl~~~~~~--------------------------------------------~~~~~Vs~v~WS---p  172 (388)
T 1xip_A          140 VILNSVNDLSALDLRTKSTK--------------------------------------------QLAQNVTSFDVT---N  172 (388)
T ss_dssp             EEEETTSEEEEEETTTCCEE--------------------------------------------EEEESEEEEEEC---S
T ss_pred             EEEECCCCEEEEEccCCccc--------------------------------------------cccCCceEEEEc---C
Confidence            88899999999999864411                                            033579999999   8


Q ss_pred             CCcEEEEeeCCCeEEEEecCCCcc--eecccccceeeeeeccCCceeEEEecCCCCCeEEE
Q 025649          179 RGKYLISGGNDKLVKVWDCSRFQG--VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV  237 (250)
Q Consensus       179 ~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  237 (250)
                      +|  ++.|..||++++|+......  ..+...+..+....+|...|.++.|.+ +++++++
T Consensus       173 kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~  230 (388)
T 1xip_A          173 SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAV  230 (388)
T ss_dssp             SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEE
T ss_pred             Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEE
Confidence            88  67888999999998887642  111111111111124778899999997 7777776

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.43  E-value=1.6e-11  Score=94.80  Aligned_cols=220  Identities=9%  Similarity=0.000  Sum_probs=135.7

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec---------CCCeEEEEEccCCCCccceecCCCCCCCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG---------LDSKLVMWDFSKGRPNKIVNFGLPENNGNA   71 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~   71 (250)
                      +|.++|+.+++.+.++. .-..+  .++++|+++.++++..         .++.|.++|..+++.+..+..+.+..   .
T Consensus       100 ~VsVID~~t~~vv~~I~-vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r---~  173 (426)
T 3c75_H          100 QQFVIDGSTGRILGMTD-GGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR---F  173 (426)
T ss_dssp             EEEEEETTTTEEEEEEE-ECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC---C
T ss_pred             eEEEEECCCCEEEEEEE-CCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc---c
Confidence            47899999999999998 44455  8999999994444432         46789999999999888876430000   0


Q ss_pred             CcccCCCceeEEecCCCcccCCCCCEEEEEeC--CCeEEEEeCCCceeEeeccCCCC------CCccceeecccceeEEE
Q 025649           72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKG--DGVVDVINIESELNISRSKSTTK------PLKGSQSTSKVNIRDAE  143 (250)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  143 (250)
                         ........+.++|      ++++++++..  ++.|.+.|+.+++....+.....      .....+.++++|+.+..
T Consensus       174 ---~~g~~P~~~~~sp------DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V  244 (426)
T 3c75_H          174 ---LVGTYQWMNALTP------DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARV  244 (426)
T ss_dssp             ---CBSCCGGGSEECT------TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEE
T ss_pred             ---ccCCCcceEEEcC------CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEE
Confidence               0012346788898      9999998864  58899999999887766554311      01112445566655442


Q ss_pred             eeeeeeccC-------------------------------------------eeeeeecccc-------C---ccccEEE
Q 025649          144 MEILDQSGG-------------------------------------------KRLHLDYSVG-------G---HTAAASC  170 (250)
Q Consensus       144 ~~~~~~~~~-------------------------------------------~~~~~~~~~~-------~---h~~~v~~  170 (250)
                       ........                                           .....+..+.       .   .......
T Consensus       245 -~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~  323 (426)
T 3c75_H          245 -DFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQ  323 (426)
T ss_dssp             -ECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSC
T ss_pred             -ECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCcee
Confidence             11100000                                           0000000000       0   0001112


Q ss_pred             EEeecCCCCCcEEEEeeC----------CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC-eEEEee
Q 025649          171 VAFSMFGERGKYLISGGN----------DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCD  239 (250)
Q Consensus       171 ~~~~p~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~  239 (250)
                      ++++   ++++.++....          ++.|.+.|..+.+         .+..+. -......++++| |++ ++++..
T Consensus       324 va~s---~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k---------vv~~I~-vg~~P~gia~sp-Dg~~~lyv~n  389 (426)
T 3c75_H          324 TAYH---RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE---------RINKIE-LGHEIDSINVSQ-DAEPLLYALS  389 (426)
T ss_dssp             EEEE---GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEEE-EEEEECEEEECC-SSSCEEEEEE
T ss_pred             eEEc---CCCCEEEEEecccccccccCCCCEEEEEECCCCe---------EEEEEE-CCCCcCeEEEcc-CCCEEEEEEc
Confidence            5777   77776655432          3579999999973         333332 223588899998 887 788877


Q ss_pred             -CCceEEEEeCC
Q 025649          240 -TSKVVKVYSIS  250 (250)
Q Consensus       240 -~d~~i~vw~~~  250 (250)
                       .++.|.++|+.
T Consensus       390 ~~s~~VsVID~~  401 (426)
T 3c75_H          390 AGTQTLHIYDAA  401 (426)
T ss_dssp             TTTTEEEEEETT
T ss_pred             CCCCeEEEEECC
Confidence             59999999963

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.43  E-value=1.2e-09  Score=80.84  Aligned_cols=190  Identities=6%  Similarity=-0.059  Sum_probs=123.0

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV   99 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~   99 (250)
                      ....+.++++.+++. ++++...++.|..||. +++.. .+....           ....+.++++.+      ++++++
T Consensus        97 ~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~-~~~~~~-----------~~~~~~~i~~~~------~g~l~v  156 (299)
T 2z2n_A           97 PDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIR-EYELPN-----------KGSYPSFITLGS------DNALWF  156 (299)
T ss_dssp             TTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEE-EEECSS-----------TTCCEEEEEECT------TSCEEE
T ss_pred             cCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEE-EecCCC-----------CCCCCceEEEcC------CCCEEE
Confidence            456789999999998 7787777889999998 55432 222110           124578899988      888888


Q ss_pred             EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeeeccCeeeeeeccccCccccEEEEEe
Q 025649          100 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQSGGKRLHLDYSVGGHTAAASCVAF  173 (250)
Q Consensus       100 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  173 (250)
                      +...++.|..||. +++............+..++++++|..+++.      ..++. ... ... .....+...+.++++
T Consensus       157 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-~~~-~~~~~~~~~~~~i~~  232 (299)
T 2z2n_A          157 TENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE-ITE-FKIPTPNARPHAITA  232 (299)
T ss_dssp             EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-EEE-EECSSTTCCEEEEEE
T ss_pred             EeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc-EEE-EECCCCCCCceeEEE
Confidence            7777889999999 6554432122223457789999998866632      11222 111 111 123334567899999


Q ss_pred             ecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee-eeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          174 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       174 ~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +   ++|+++++...++.|..||.. +         ..... ...+...+.++++ + ++.+.++.+ .+.+..++.
T Consensus       233 ~---~~g~l~v~~~~~~~i~~~d~~-g---------~~~~~~~~~~~~~~~~i~~-~-~g~l~v~~~-~~~l~~~~~  293 (299)
T 2z2n_A          233 G---AGIDLWFTEWGANKIGRLTSN-N---------IIEEYPIQIKSAEPHGICF-D-GETIWFAME-CDKIGKLTL  293 (299)
T ss_dssp             C---STTCEEEEETTTTEEEEEETT-T---------EEEEEECSSSSCCEEEEEE-C-SSCEEEEET-TTEEEEEEE
T ss_pred             C---CCCCEEEeccCCceEEEECCC-C---------ceEEEeCCCCCCccceEEe-c-CCCEEEEec-CCcEEEEEc
Confidence            9   888877777678999999983 3         21111 2234467888888 5 787666655 455655553

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.40  E-value=6.7e-12  Score=95.64  Aligned_cols=151  Identities=11%  Similarity=0.015  Sum_probs=101.9

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  102 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  102 (250)
                      +++.+++++... ++++|+.+ .+++|++.+.+....-...   ..+.......+. |+.++| .       +++|+++ 
T Consensus        39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~---~~~~~~~~~lp~-V~~l~f-d-------~~~L~v~-  103 (388)
T 1xip_A           39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDST---PLTFKWEKEIPD-VIFVCF-H-------GDQVLVS-  103 (388)
T ss_dssp             CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSC---CCCCSEEEECTT-EEEEEE-E-------TTEEEEE-
T ss_pred             cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccc---cccceEEeeCCC-eeEEEE-C-------CCEEEEE-
Confidence            689999999998 89999887 5556997644310000000   000001112455 888888 3       7888888 


Q ss_pred             CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcE
Q 025649          103 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY  182 (250)
Q Consensus       103 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  182 (250)
                      .++.|++||+++.....                                        ....|...+.++.+.+  |   .
T Consensus       104 ~~~~l~v~dv~sl~~~~----------------------------------------~~~~~~~~v~~i~~~~--p---~  138 (388)
T 1xip_A          104 TRNALYSLDLEELSEFR----------------------------------------TVTSFEKPVFQLKNVN--N---T  138 (388)
T ss_dssp             ESSEEEEEESSSTTCEE----------------------------------------EEEECSSCEEEEEECS--S---E
T ss_pred             cCCcEEEEEchhhhccC----------------------------------------ccceeecceeeEEecC--C---C
Confidence            88999999998643111                                        1122344567777662  3   2


Q ss_pred             EEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          183 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       183 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +++++.||.|.+||++.+.         ..    .+...|.+++|+| +|  ++.|..||++++|+.
T Consensus       139 ~av~~~dG~L~v~dl~~~~---------~~----~~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~  189 (388)
T 1xip_A          139 LVILNSVNDLSALDLRTKS---------TK----QLAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAW  189 (388)
T ss_dssp             EEEEETTSEEEEEETTTCC---------EE----EEEESEEEEEECS-SE--EEEEETTSCEEEEEE
T ss_pred             EEEEECCCCEEEEEccCCc---------cc----cccCCceEEEEcC-Cc--eEEEEcCCcEEEEcC
Confidence            8888999999999999863         21    1446899999998 66  678999999999964

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.40  E-value=3.1e-10  Score=84.27  Aligned_cols=200  Identities=10%  Similarity=-0.018  Sum_probs=122.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |..||..+++. ..+.  ....+.+++++++++ ++++.  ++.|.+||..+++........ .   .     .....+.
T Consensus        37 i~~~d~~~~~~-~~~~--~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~~~~~~~~~-~---~-----~~~~~~~  101 (297)
T 3g4e_A           37 VCRWDSFTKQV-QRVT--MDAPVSSVALRQSGG-YVATI--GTKFCALNWKEQSAVVLATVD-N---D-----KKNNRFN  101 (297)
T ss_dssp             EEEEETTTCCE-EEEE--CSSCEEEEEEBTTSS-EEEEE--TTEEEEEETTTTEEEEEEECC-T---T-----CSSEEEE
T ss_pred             EEEEECCCCcE-EEEe--CCCceEEEEECCCCC-EEEEE--CCeEEEEECCCCcEEEEEecC-C---C-----CCCCCCC
Confidence            56677766654 3343  456799999999998 55554  568999999877643222211 0   0     0123467


Q ss_pred             EEecCCCcccCCCCCEEEEEeC-----------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-----
Q 025649           82 AIAIPDADMLDKTNKICVVAKG-----------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-----  145 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  145 (250)
                      .+++.|      +|+++++...           .+.|..+|.. ++.......  ......++|+|+++.+....     
T Consensus       102 di~~d~------dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~--~~~pngi~~spdg~~lyv~~~~~~~  172 (297)
T 3g4e_A          102 DGKVDP------AGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQ--VDISNGLDWSLDHKIFYYIDSLSYS  172 (297)
T ss_dssp             EEEECT------TSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEE--ESBEEEEEECTTSCEEEEEEGGGTE
T ss_pred             CEEECC------CCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeec--cccccceEEcCCCCEEEEecCCCCc
Confidence            889998      8887765532           2344455543 222221111  13456899999998765322     


Q ss_pred             --eeee--ccC--eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC
Q 025649          146 --ILDQ--SGG--KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN  219 (250)
Q Consensus       146 --~~~~--~~~--~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  219 (250)
                        .++.  ...  ...+....+..+...+..+++.   ++|++.++....+.|..||..++         +++.....+.
T Consensus       173 i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d---~~G~lwva~~~~~~v~~~d~~tG---------~~~~~i~~p~  240 (297)
T 3g4e_A          173 VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID---AEGKLWVACYNGGRVIRLDPVTG---------KRLQTVKLPV  240 (297)
T ss_dssp             EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB---TTSCEEEEEETTTEEEEECTTTC---------CEEEEEECSS
T ss_pred             EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC---CCCCEEEEEcCCCEEEEEcCCCc---------eEEEEEECCC
Confidence              1221  111  1112233444445667899999   89998888888889999999977         5555555566


Q ss_pred             CceeEEEecCCCCCeEEE
Q 025649          220 KKVNWLCTTPTESENLVV  237 (250)
Q Consensus       220 ~~v~~~~~~~~~~~~l~s  237 (250)
                      ..+++++|..++++.|+.
T Consensus       241 ~~~t~~~f~g~d~~~L~v  258 (297)
T 3g4e_A          241 DKTTSCCFGGKNYSEMYV  258 (297)
T ss_dssp             SBEEEEEEESGGGCEEEE
T ss_pred             CCceEEEEeCCCCCEEEE
Confidence            779999998336555543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.40  E-value=6.7e-10  Score=82.42  Aligned_cols=200  Identities=11%  Similarity=-0.007  Sum_probs=126.3

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      .+..--.+..|+|++..++++...++.|..||..+++. ..+.              .+..+.++++.|      +++++
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~--------------~~~~~~~i~~~~------dG~l~   68 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT--------------MDAPVSSVALRQ------SGGYV   68 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE--------------CSSCEEEEEEBT------TSSEE
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe--------------CCCceEEEEECC------CCCEE
Confidence            44456678999997665788888899999999987654 3343              235688999998      88855


Q ss_pred             EEEeCCCeEEEEeCCCceeEeeccCC---CCCCccceeecccceeEEEeeeeeec------cCeeee------eeccccC
Q 025649           99 VVAKGDGVVDVINIESELNISRSKST---TKPLKGSQSTSKVNIRDAEMEILDQS------GGKRLH------LDYSVGG  163 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~------~~~~~~~  163 (250)
                      ++ . ++.|.+||..+++........   ....+..++++|+|+++++.......      ......      ....+..
T Consensus        69 v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~  146 (297)
T 3g4e_A           69 AT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD  146 (297)
T ss_dssp             EE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE
T ss_pred             EE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee
Confidence            54 3 568999999887654332221   12346789999999977643211100      000000      0011112


Q ss_pred             ccccEEEEEeecCCCCCcEE-EEeeCCCeEEEEecC--CCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC
Q 025649          164 HTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCS--RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT  240 (250)
Q Consensus       164 h~~~v~~~~~~p~~~~~~~l-~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  240 (250)
                      +......++|+   |+++.| ++.+.++.|.+||+.  ++....    .+.+..+..+...+..+++.+ +|.+.++...
T Consensus       147 ~~~~pngi~~s---pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~----~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~  218 (297)
T 3g4e_A          147 QVDISNGLDWS---LDHKIFYYIDSLSYSVDAFDYDLQTGQISN----RRSVYKLEKEEQIPDGMCIDA-EGKLWVACYN  218 (297)
T ss_dssp             EESBEEEEEEC---TTSCEEEEEEGGGTEEEEEEECTTTCCEEE----EEEEEECCGGGCEEEEEEEBT-TSCEEEEEET
T ss_pred             ccccccceEEc---CCCCEEEEecCCCCcEEEEeccCCCCcccC----cEEEEECCCCCCCCCeeEECC-CCCEEEEEcC
Confidence            23346789999   888765 555668899999974  442110    022222333445678899987 7877777777


Q ss_pred             CceEEEEeC
Q 025649          241 SKVVKVYSI  249 (250)
Q Consensus       241 d~~i~vw~~  249 (250)
                      ++.|..||.
T Consensus       219 ~~~v~~~d~  227 (297)
T 3g4e_A          219 GGRVIRLDP  227 (297)
T ss_dssp             TTEEEEECT
T ss_pred             CCEEEEEcC
Confidence            788999875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.39  E-value=2.6e-09  Score=78.95  Aligned_cols=208  Identities=7%  Similarity=-0.075  Sum_probs=133.7

Q ss_pred             cEEEEcccceeee-eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            2 WQIIDIRQHCLYK-SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         2 i~iwd~~~~~~~~-~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      |.+||.. ++... .+. .+...+.++++.+++. ++++...++.|..+|.. ++. ..+....           ....+
T Consensus        43 v~~~~~~-~~~~~~~~~-~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~~-~~~~~~~-----------~~~~~  106 (300)
T 2qc5_A           43 ISSLDQS-GRIKEFEVP-TPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GGF-TEYPLPQ-----------PDSGP  106 (300)
T ss_dssp             EEEECTT-SCEEEEECS-STTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCE-EEEECSS-----------TTCCE
T ss_pred             EEEECCC-CceEEEECC-CCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CCe-EEecCCC-----------CCCCC
Confidence            5567765 44432 222 3446789999999998 77777778899999987 543 2332110           12457


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee------eeeeccCee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSGGKR  154 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  154 (250)
                      .++++.+      +++++++...++.|..+|.. ++............+..++++++|+..++..      .++. .. .
T Consensus       107 ~~i~~~~------~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g-~  177 (300)
T 2qc5_A          107 YGITEGL------NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TG-K  177 (300)
T ss_dssp             EEEEECS------TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC-C
T ss_pred             ccceECC------CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CC-c
Confidence            8888887      88888887778899999988 5544222222235678899999998665321      1111 11 1


Q ss_pred             eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee-eeccCCceeEEEecCCCCC
Q 025649          155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLNKKVNWLCTTPTESE  233 (250)
Q Consensus       155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~  233 (250)
                      ... .....+...+.++++.   ++|++.++....+.|.+||. ++         ..... ...+...+..+++.+ +++
T Consensus       178 ~~~-~~~~~~~~~~~~i~~d---~~g~l~v~~~~~~~i~~~~~-~g---------~~~~~~~~~~~~~~~~i~~d~-~g~  242 (300)
T 2qc5_A          178 LEE-YPLPTNAAAPVGITSG---NDGALWFVEIMGNKIGRITT-TG---------EISEYDIPTPNARPHAITAGK-NSE  242 (300)
T ss_dssp             EEE-EECSSTTCCEEEEEEC---TTSSEEEEETTTTEEEEECT-TC---------CEEEEECSSTTCCEEEEEECS-TTC
T ss_pred             EEE-eeCCCCCCCcceEEEC---CCCCEEEEccCCCEEEEEcC-CC---------cEEEEECCCCCCCceEEEECC-CCC
Confidence            111 1223344568899999   88888887777789999998 33         22111 223445688899887 677


Q ss_pred             eEEEeeCCceEEEEeC
Q 025649          234 NLVVCDTSKVVKVYSI  249 (250)
Q Consensus       234 ~l~s~~~d~~i~vw~~  249 (250)
                      +.++...++.|..|+.
T Consensus       243 l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          243 IWFTEWGANQIGRITN  258 (300)
T ss_dssp             EEEEETTTTEEEEECT
T ss_pred             EEEeccCCCeEEEECC
Confidence            6666656788888874

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.37  E-value=1.4e-10  Score=96.74  Aligned_cols=213  Identities=10%  Similarity=0.023  Sum_probs=125.4

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCe--------------EEEEEccCCCCccceecCCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK--------------LVMWDFSKGRPNKIVNFGLPE   66 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~--------------v~iwd~~~~~~~~~~~~~~~~   66 (250)
                      +|++||+++++.+...  .+...+..++|+|| + .|+.++.++.              |++|++.++.....+....+ 
T Consensus       190 ~i~v~dl~tg~~~~~~--~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~-  264 (741)
T 1yr2_A          190 TVKFVGVADGKPLADE--LKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATP-  264 (741)
T ss_dssp             EEEEEETTTCCEEEEE--EEEEESCCCEESTT-S-EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCT-
T ss_pred             EEEEEECCCCCCCCcc--CCCceeccEEEECC-C-EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccC-
Confidence            3889999999876432  23333468999999 8 6666665543              88999877653222221200 


Q ss_pred             CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC-----eEEEEeCCCc--eeEeeccCCCCCCccceeecccce
Q 025649           67 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-----VVDVINIESE--LNISRSKSTTKPLKGSQSTSKVNI  139 (250)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  139 (250)
                              .++..+.++.|+|      +|++|+..+.++     .|.+||+.++  .....+.... ...... ++|+|+
T Consensus       265 --------~~~~~~~~~~~Sp------DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~-~~~dg~  328 (741)
T 1yr2_A          265 --------ELPKRGHGASVSS------DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL-KAQWDF-VDGVGD  328 (741)
T ss_dssp             --------TCTTCEEEEEECT------TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS-SSCEEE-EEEETT
T ss_pred             --------CCCeEEEEEEECC------CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC-CceEEE-EeccCC
Confidence                    0223578899998      999888877543     8999999876  3022222222 222222 347887


Q ss_pred             eEEEeee----------eeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecC-CCcceecccc
Q 025649          140 RDAEMEI----------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS-RFQGVQTSIN  208 (250)
Q Consensus       140 ~~~~~~~----------~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~  208 (250)
                      .++....          ++..... ......+..+...+..+.++    ++.++++...|+..+||.+. .+        
T Consensus       329 ~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~----~~~lv~~~~~dg~~~l~~~~~~g--------  395 (741)
T 1yr2_A          329 QLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA----GNRLFASYIHDAKSQVLAFDLDG--------  395 (741)
T ss_dssp             EEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE----BTEEEEEEEETTEEEEEEEETTS--------
T ss_pred             EEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE----CCEEEEEEEECCEEEEEEEeCCC--------
Confidence            7763221          1111110 11122233444556677776    46788888889988777654 23        


Q ss_pred             cceeeeeec-cCCceeEEEecCCCCCeEE-Ee---eCCceEEEEeC
Q 025649          209 NDLLIKNIN-LNKKVNWLCTTPTESENLV-VC---DTSKVVKVYSI  249 (250)
Q Consensus       209 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~-s~---~~d~~i~vw~~  249 (250)
                       .....+.. +...+..+.++| +++.++ +.   ...+.|++||+
T Consensus       396 -~~~~~l~~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          396 -KPAGAVSLPGIGSASGLSGRP-GDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             -CEEEECBCSSSCEEEEEECCB-TCSCEEEEEEETTEEEEEEEEET
T ss_pred             -CceeeccCCCCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEEC
Confidence             22222322 356688888887 665554 32   24578999986

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.33  E-value=8.2e-09  Score=76.28  Aligned_cols=208  Identities=4%  Similarity=-0.086  Sum_probs=128.8

Q ss_pred             cEEEEcccceeeeeec-cCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            2 WQIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      |..+|.. ++.. .+. ......+.++++.+++. ++++...++.|..+|.. ++.. .+....           ....+
T Consensus        85 v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~-~~~~~~-----------~~~~~  148 (300)
T 2qc5_A           85 IGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIY-EYDLPN-----------KGSYP  148 (300)
T ss_dssp             EEEECTT-SCEE-EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEE-EEECSS-----------TTCCE
T ss_pred             EEEECCC-CCeE-EecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEE-EccCCC-----------CCCCc
Confidence            4566665 4442 222 03446789999999998 77777778899999986 5433 222110           12457


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee---eeeeccC-eeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGG-KRLH  156 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~  156 (250)
                      .++++.+      ++++.++...++.|..+|. +++............+..+.++++|...++..   ....... ....
T Consensus       149 ~~i~~d~------~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~  221 (300)
T 2qc5_A          149 AFITLGS------DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEIS  221 (300)
T ss_dssp             EEEEECT------TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEE
T ss_pred             eeEEECC------CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEE
Confidence            8888887      8887777767889999998 44443322222235677899999987666421   1111111 1111


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee-eeccCCceeEEEecCCCCCeE
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l  235 (250)
                       ...+..+...+.+++++   ++|+++++...++.|..||.. +         ..... .......+.++++.+ +|.+.
T Consensus       222 -~~~~~~~~~~~~~i~~d---~~g~l~v~~~~~~~i~~~~~~-g---------~~~~~~~~~~~~~~~~i~~~~-~g~l~  286 (300)
T 2qc5_A          222 -EYDIPTPNARPHAITAG---KNSEIWFTEWGANQIGRITND-N---------TIQEYQLQTENAEPHGITFGK-DGSVW  286 (300)
T ss_dssp             -EEECSSTTCCEEEEEEC---STTCEEEEETTTTEEEEECTT-S---------CEEEEECCSTTCCCCCEEECT-TSCEE
T ss_pred             -EEECCCCCCCceEEEEC---CCCCEEEeccCCCeEEEECCC-C---------cEEEEECCccCCccceeEeCC-CCCEE
Confidence             11223345668899999   888877777778999999984 3         22111 222345688888886 77755


Q ss_pred             EEeeCCceEEEEeC
Q 025649          236 VVCDTSKVVKVYSI  249 (250)
Q Consensus       236 ~s~~~d~~i~vw~~  249 (250)
                      ++.. + .|..+|.
T Consensus       287 v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          287 FALK-C-KIGKLNL  298 (300)
T ss_dssp             EECS-S-EEEEEEE
T ss_pred             EEcc-C-ceEEeCC
Confidence            5544 5 6777664

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.32  E-value=1.5e-10  Score=96.50  Aligned_cols=195  Identities=7%  Similarity=-0.150  Sum_probs=116.3

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCC-----CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLD-----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK   93 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (250)
                      +|...+..++|||||+ +|+.++.+     .+|++||+.+++.+.... .             ...+..++|+|      
T Consensus       160 ~~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~-------------~~~~~~~~wsp------  218 (741)
T 1yr2_A          160 DGATALDAWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADGKPLADEL-K-------------WVKFSGLAWLG------  218 (741)
T ss_dssp             ---EEEEEEEECTTSS-EEEEEEEETTCSEEEEEEEETTTCCEEEEEE-E-------------EEESCCCEEST------
T ss_pred             CCCEEEEeEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCCccC-C-------------CceeccEEEEC------
Confidence            3444788999999999 66665433     469999999887644311 1             11235788998      


Q ss_pred             CCCEEEEEeCCCe--------------EEEEeCCCcee--EeeccCC-CCCCccceeecccceeEEEeeeeee-------
Q 025649           94 TNKICVVAKGDGV--------------VDVINIESELN--ISRSKST-TKPLKGSQSTSKVNIRDAEMEILDQ-------  149 (250)
Q Consensus        94 ~~~~l~~~~~d~~--------------i~~~d~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------  149 (250)
                      + +.|+.++.++.              |.+|++.++..  ....... ....+..+.++|||++++... .+.       
T Consensus       219 D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~~~~l  296 (741)
T 1yr2_A          219 N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITS-SEGTDPVNTV  296 (741)
T ss_dssp             T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE-ECTTCSCCEE
T ss_pred             C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEE-EccCCCcceE
Confidence            8 88888776554              89999987652  1122221 123477899999999888432 221       


Q ss_pred             cc--Ceee--eeeccccCccccEEEEEeecCCCCCcEEEEeeC----CCeEEEEecCCCcceecccccceeeeeeccCCc
Q 025649          150 SG--GKRL--HLDYSVGGHTAAASCVAFSMFGERGKYLISGGN----DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK  221 (250)
Q Consensus       150 ~~--~~~~--~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  221 (250)
                      ..  ....  +....+..+...+... ++   |+|+.|+..+.    ++.|.+||+.++. .      ........+...
T Consensus       297 ~~~d~~~~~~~~~~~l~~~~~~~~~~-~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~------~~~~l~~~~~~~  365 (741)
T 1yr2_A          297 HVARVTNGKIGPVTALIPDLKAQWDF-VD---GVGDQLWFVSGDGAPLKKIVRVDLSGST-P------RFDTVVPESKDN  365 (741)
T ss_dssp             EEEEEETTEECCCEEEECSSSSCEEE-EE---EETTEEEEEECTTCTTCEEEEEECSSSS-C------EEEEEECCCSSE
T ss_pred             EEEECCCCCCcccEEecCCCCceEEE-Ee---ccCCEEEEEECCCCCCCEEEEEeCCCCc-c------ccEEEecCCCCe
Confidence            11  0100  1023333344444443 34   57777776654    3469999988742 0      122222334445


Q ss_pred             eeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          222 VNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       222 v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +..+.+.  ++.++++...|+..+||.+
T Consensus       366 l~~~~~~--~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          366 LESVGIA--GNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             EEEEEEE--BTEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEE--CCEEEEEEEECCEEEEEEE
Confidence            6667776  5667888888998887753

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.32  E-value=2.6e-10  Score=86.61  Aligned_cols=98  Identities=6%  Similarity=-0.189  Sum_probs=72.2

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec----------CCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG----------LDSKLVMWDFSKGRPNKIVNFGLPENNGN   70 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~   70 (250)
                      +|.++|..+++.+.++. ....+  .+.++|+++ .++.+.          .++.|.+||+.+++.+.++..+...    
T Consensus        47 ~vsvID~~t~~v~~~i~-vG~~P--~i~~spDg~-~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~----  118 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSL-GAFLS--LAVAGHSGS-DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP----  118 (368)
T ss_dssp             EEEEEETTTTEEEEEEE-ECTTC--EEEECTTSS-CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC----
T ss_pred             eEEEEECCCCeEEEEEe-CCCCC--ceEECCCCC-EEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc----
Confidence            36689999999999998 44455  799999998 455553          4789999999999999988754100    


Q ss_pred             CCcccCCCceeEEecCCCcccCCCCCEEEEEeC--CCeEEE--EeCCC
Q 025649           71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG--DGVVDV--INIES  114 (250)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~--~d~~~  114 (250)
                      ...  .-...+.++++|      ++++++++..  +..+.+  +|+.+
T Consensus       119 ~~~--~g~~P~~ia~Sp------DGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          119 RFS--VGPRVHIIGNCA------SSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             SCC--BSCCTTSEEECT------TSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             ccc--cCCCcceEEEcC------CCCEEEEEccCCCCeEEEEEEchhh
Confidence            000  002346788998      9999998864  467888  99876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.32  E-value=1.4e-09  Score=81.03  Aligned_cols=203  Identities=10%  Similarity=-0.061  Sum_probs=120.8

Q ss_pred             CCCCCeeeEEEcCCCCeEEEE-------ecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649           19 GHSSICSSVQFIPWKPWEVIS-------GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML   91 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s-------~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   91 (250)
                      ..-....+++|++++. ++++       +..++.|.+||..+++.. .+...  .      ...+...+.++++.+    
T Consensus        15 ~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~--~------~~~~~~~~~~i~~~~----   80 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKP--E------VNGYGGIPAGCQCDR----   80 (314)
T ss_dssp             CCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEE-EEECC--E------ETTEECCEEEEEECS----
T ss_pred             ccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEec--c------cCCCCCCCceEEEec----
Confidence            3444668999999998 7777       677899999998777643 22210  0      000124578899987    


Q ss_pred             CCC-CCEEEEEeCCCeEEEEeCCCceeEee-ccCC---CCCCccceeecccceeEEEeeee----------------ee-
Q 025649           92 DKT-NKICVVAKGDGVVDVINIESELNISR-SKST---TKPLKGSQSTSKVNIRDAEMEIL----------------DQ-  149 (250)
Q Consensus        92 ~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~----------------~~-  149 (250)
                        + ++++++.. .+.|.+||.. ++.... ....   ....+..++++++|+++++....                .. 
T Consensus        81 --~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~  156 (314)
T 1pjx_A           81 --DANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIY  156 (314)
T ss_dssp             --SSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred             --CCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEE
Confidence              7 66555544 4478999998 665433 2211   12347889999999877743211                00 


Q ss_pred             -ccCeeeeeeccccCccccEEEEEee----cCCCCCcEE-EEeeCCCeEEEEecC-CCcceecccccceeeeeeccC-Cc
Q 025649          150 -SGGKRLHLDYSVGGHTAAASCVAFS----MFGERGKYL-ISGGNDKLVKVWDCS-RFQGVQTSINNDLLIKNINLN-KK  221 (250)
Q Consensus       150 -~~~~~~~~~~~~~~h~~~v~~~~~~----p~~~~~~~l-~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~-~~  221 (250)
                       .... .+. ..+..+......++++    |   +++.+ ++...++.|.+||.. .+....    .........+. ..
T Consensus       157 ~~~~~-g~~-~~~~~~~~~~~~i~~~~~~d~---dg~~l~v~~~~~~~i~~~~~~~~g~~~~----~~~~~~~~~~~~~~  227 (314)
T 1pjx_A          157 CFTTD-GQM-IQVDTAFQFPNGIAVRHMNDG---RPYQLIVAETPTKKLWSYDIKGPAKIEN----KKVWGHIPGTHEGG  227 (314)
T ss_dssp             EECTT-SCE-EEEEEEESSEEEEEEEECTTS---CEEEEEEEETTTTEEEEEEEEETTEEEE----EEEEEECCCCSSCE
T ss_pred             EECCC-CCE-EEeccCCCCcceEEEecccCC---CCCEEEEEECCCCeEEEEECCCCCcccc----ceEEEECCCCCCCC
Confidence             0111 111 1111222345677776    4   56544 555568899999986 331100    01222233333 56


Q ss_pred             eeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          222 VNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       222 v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +..+++.+ +|.++++...++.|.+||.
T Consensus       228 p~~i~~d~-~G~l~v~~~~~~~i~~~d~  254 (314)
T 1pjx_A          228 ADGMDFDE-DNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEBT-TCCEEEEEETTTEEEEECT
T ss_pred             CCceEECC-CCCEEEEEcCCCEEEEEcC
Confidence            78899987 8887777777889999985

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.29  E-value=5.2e-10  Score=85.08  Aligned_cols=178  Identities=8%  Similarity=-0.074  Sum_probs=111.7

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec----------CCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG----------LDSKLVMWDFSKGRPNKIVNFGLPENNGN   70 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~   70 (250)
                      +|.+.|..+++.+.++. ....+ . ++++|+|+ .++.+.          .++.|.+||..+++.+..+..+...   .
T Consensus        60 ~V~ViD~~t~~v~~~I~-vG~~P-~-va~spDG~-~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~---r  132 (386)
T 3sjl_D           60 QQFVIDGEAGRVIGMID-GGFLP-N-PVVADDGS-FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP---R  132 (386)
T ss_dssp             EEEEEETTTTEEEEEEE-ECSSC-E-EEECTTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC---C
T ss_pred             EEEEEECCCCeEEEEEE-CCCCC-c-EEECCCCC-EEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc---c
Confidence            36789999999999998 44455 4 99999999 454443          3678999999999988888654100   0


Q ss_pred             CCcccCCCceeEEecCCCcccCCCCCEEEEEeC--CCeEEEEeCCCceeEeeccCCCCC------CccceeecccceeEE
Q 025649           71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG--DGVVDVINIESELNISRSKSTTKP------LKGSQSTSKVNIRDA  142 (250)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  142 (250)
                         ......-..++++|      +|++++++..  ++.|.++|+.+++....+......      .-.-+..++||+++.
T Consensus       133 ---~~~g~~P~~~a~sp------DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~  203 (386)
T 3sjl_D          133 ---FLVGTYPWMTSLTP------DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAK  203 (386)
T ss_dssp             ---CCBSCCGGGEEECT------TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEE
T ss_pred             ---cccCCCCceEEEcC------CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEE
Confidence               00012346789998      9999988864  689999999999888777543211      111136677777665


Q ss_pred             Eeeeee-eccCeeeeeeccccCccccEE-EEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649          143 EMEILD-QSGGKRLHLDYSVGGHTAAAS-CVAFSMFGERGKYLISGGNDKLVKVWDCSRF  200 (250)
Q Consensus       143 ~~~~~~-~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~  200 (250)
                       +.... ........  ..+......+. ..+|.+  ++|++++ .+.+|.|.+.|+.+.
T Consensus       204 -v~~~~~g~v~~~~~--~~~~~~~~~~~~~~~~~~--~dG~~~~-vs~~g~V~v~d~~~~  257 (386)
T 3sjl_D          204 -VAFGTEGTPEITHT--EVFHPEDEFLINHPAYSQ--KAGRLVW-PTYTGKIHQIDLSSG  257 (386)
T ss_dssp             -EECCSSSCCEEEEC--CCCSCTTSCBCSCCEEET--TTTEEEE-EBTTSEEEEEECTTS
T ss_pred             -EECCCCCeEEEeec--ceeccccccccccceeEc--CCCcEEE-EeCCCEEEEEECCCC
Confidence             22221 11111000  11111112221 235542  6776655 444799999999775

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.28  E-value=7.7e-09  Score=74.66  Aligned_cols=212  Identities=9%  Similarity=-0.010  Sum_probs=128.2

Q ss_pred             cceeeeeeccCCC--CCeeeEEEcCCCCeEEEEecC--CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEe
Q 025649            9 QHCLYKSLRAGHS--SICSSVQFIPWKPWEVISGGL--DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA   84 (250)
Q Consensus         9 ~~~~~~~l~~~h~--~~v~~l~~~~~~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   84 (250)
                      +.+.+.++.  |.  .....+.|++++. ++++.+.  ++.|++.|+.+++.+..+..+            .......++
T Consensus         8 ~~~vv~~~p--~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~------------~~~fgeGi~   72 (266)
T 2iwa_A            8 IVEVLNEFP--HDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKMD------------DSYFGEGLT   72 (266)
T ss_dssp             EEEEEEEEE--CCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEECC------------TTCCEEEEE
T ss_pred             CceEEEEEE--CCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEecC------------CCcceEEEE
Confidence            456777887  44  3468999999875 5665543  689999999999998887754            112223444


Q ss_pred             cCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee---eeeccCeeeeeeccc
Q 025649           85 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI---LDQSGGKRLHLDYSV  161 (250)
Q Consensus        85 ~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  161 (250)
                      +.       .+++.++.-.++.+.++|..+.+.+..+... .  -....+++||+.++.+..   ....+....+.+..+
T Consensus        73 ~~-------g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~--~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I  142 (266)
T 2iwa_A           73 LL-------NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-M--KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKH  142 (266)
T ss_dssp             EE-------TTEEEEEETTCSEEEEEETTTTEEEEEEECC-S--SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             Ee-------CCEEEEEEecCCEEEEEECCCCcEEEEEECC-C--CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEE
Confidence            43       2344455557899999999998888776544 1  123556778777763221   001112222223333


Q ss_pred             cCc-----cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee--ee--ccCCceeEEEecCCCC
Q 025649          162 GGH-----TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK--NI--NLNKKVNWLCTTPTES  232 (250)
Q Consensus       162 ~~h-----~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~--~~~~~v~~~~~~~~~~  232 (250)
                      .-.     -..++.+.|.    +|...+....++.|.+.|..+++.........+...  ..  .-....+.+++.|...
T Consensus       143 ~Vg~~~~p~~~~nele~~----dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~  218 (266)
T 2iwa_A          143 NVKYNGHRVIRLNELEYI----NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK  218 (266)
T ss_dssp             ECEETTEECCCEEEEEEE----TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT
T ss_pred             EECCCCcccccceeEEEE----CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC
Confidence            211     1135677776    566666666688999999999854422111000000  00  0113568999998445


Q ss_pred             CeEEEeeCCceEEEEeC
Q 025649          233 ENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       233 ~~l~s~~~d~~i~vw~~  249 (250)
                      ++++++...+++.+-++
T Consensus       219 ~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          219 RIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             EEEEEETTCSEEEEEEE
T ss_pred             EEEEECCCCCeEEEEEE
Confidence            56777778888877664

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.27  E-value=1.4e-08  Score=76.29  Aligned_cols=199  Identities=10%  Similarity=0.019  Sum_probs=118.4

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |..||.++++.. .+.  ....+.+++++|++. ++++. .+ .|.+||..+++........     .    ......+.
T Consensus        73 i~~~d~~~~~~~-~~~--~~~~v~~i~~~~dg~-l~v~~-~~-gl~~~d~~~g~~~~~~~~~-----~----~~~~~~~~  137 (326)
T 2ghs_A           73 LHELHLASGRKT-VHA--LPFMGSALAKISDSK-QLIAS-DD-GLFLRDTATGVLTLHAELE-----S----DLPGNRSN  137 (326)
T ss_dssp             EEEEETTTTEEE-EEE--CSSCEEEEEEEETTE-EEEEE-TT-EEEEEETTTCCEEEEECSS-----T----TCTTEEEE
T ss_pred             EEEEECCCCcEE-EEE--CCCcceEEEEeCCCe-EEEEE-CC-CEEEEECCCCcEEEEeeCC-----C----CCCCCCCC
Confidence            567777766542 343  346799999999997 56554 33 4999999877643222111     0    00123578


Q ss_pred             EEecCCCcccCCCCCEEEEEeC------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-------eee
Q 025649           82 AIAIPDADMLDKTNKICVVAKG------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-------ILD  148 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  148 (250)
                      .+.+.|      +|+++++...      .+.|..++  +++.......  ......++|+|+++.+....       .++
T Consensus       138 ~i~~d~------~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d  207 (326)
T 2ghs_A          138 DGRMHP------SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--ISIPNSICFSPDGTTGYFVDTKVNRLMRVP  207 (326)
T ss_dssp             EEEECT------TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--ESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             CEEECC------CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--CcccCCeEEcCCCCEEEEEECCCCEEEEEE
Confidence            899998      8887765542      25666666  4443322111  13456889999998664321       122


Q ss_pred             ec--cC-e--eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCcee
Q 025649          149 QS--GG-K--RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN  223 (250)
Q Consensus       149 ~~--~~-~--~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (250)
                      ..  .. .  ..+....+......+..+++.   ++|++.++...++.|.+||.. +         +.+..+..+...+.
T Consensus       208 ~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d---~~G~lwva~~~~~~v~~~d~~-g---------~~~~~i~~~~~~~~  274 (326)
T 2ghs_A          208 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCD---AEGHIWNARWGEGAVDRYDTD-G---------NHIARYEVPGKQTT  274 (326)
T ss_dssp             BCTTTCCBSSCCEEEEECTTSSSEEEEEEEC---TTSCEEEEEETTTEEEEECTT-C---------CEEEEEECSCSBEE
T ss_pred             cccccCCcccCceEEEECCCCCCCCCeeEEC---CCCCEEEEEeCCCEEEEECCC-C---------CEEEEEECCCCCcE
Confidence            11  11 0  011122233334556788998   889888877777899999984 4         34444445556789


Q ss_pred             EEEecCCCCCeEEEe
Q 025649          224 WLCTTPTESENLVVC  238 (250)
Q Consensus       224 ~~~~~~~~~~~l~s~  238 (250)
                      +++|..++++.|+.+
T Consensus       275 ~~af~g~d~~~L~vt  289 (326)
T 2ghs_A          275 CPAFIGPDASRLLVT  289 (326)
T ss_dssp             EEEEESTTSCEEEEE
T ss_pred             EEEEecCCCCEEEEE
Confidence            999982266555443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.26  E-value=8.7e-10  Score=83.54  Aligned_cols=196  Identities=8%  Similarity=-0.021  Sum_probs=120.3

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecC-----CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGL-----DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK   93 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (250)
                      +|-..+..++++++++ ++++-..     ++.|.+||+.+++.+..+..+...       .........+++.|      
T Consensus        64 ~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~-------~~~~~~~~~v~vd~------  129 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI-------TLSNSFVNDLAVDL------  129 (343)
T ss_dssp             CCCSCEEEEEECSSSE-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT-------SCTTCCCCEEEEET------
T ss_pred             cceeEeeEEEEcCCCc-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh-------cccccccceEEEec------
Confidence            3557899999999987 5655433     579999999988877776643100       01223457888886      


Q ss_pred             CC-CEEEEEe---CCCeEEEEeCCCceeEeeccCC----------------------------CCCCccceeecccceeE
Q 025649           94 TN-KICVVAK---GDGVVDVINIESELNISRSKST----------------------------TKPLKGSQSTSKVNIRD  141 (250)
Q Consensus        94 ~~-~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~  141 (250)
                      ++ ..+++..   .++.|.+||+.+++.......+                            .......++++|+|+.+
T Consensus       130 ~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~l  209 (343)
T 2qe8_A          130 IHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWL  209 (343)
T ss_dssp             TTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEE
T ss_pred             CCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEE
Confidence            44 4445554   6789999999877654433210                            00124678999999877


Q ss_pred             EEeeeeeecc--C-----e-----eeeeecc--ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccc
Q 025649          142 AEMEILDQSG--G-----K-----RLHLDYS--VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI  207 (250)
Q Consensus       142 ~~~~~~~~~~--~-----~-----~~~~~~~--~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  207 (250)
                      ..........  .     .     ..+....  ..++......++++   ++|+++++...++.|.+||..++       
T Consensus       210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d---~~G~l~va~~~~~~V~~~d~~~G-------  279 (343)
T 2qe8_A          210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISID---KDHNIYVGDLAHSAIGVITSADR-------  279 (343)
T ss_dssp             EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEEC---TTCCEEEEEGGGTEEEEEETTTT-------
T ss_pred             EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEEC---CCCCEEEEccCCCeEEEEECCCC-------
Confidence            6322111000  0     0     0000011  11233345678899   89999999989999999998554       


Q ss_pred             ccceeeee-eccCCceeEEEecCCCCCeEEEeeCC
Q 025649          208 NNDLLIKN-INLNKKVNWLCTTPTESENLVVCDTS  241 (250)
Q Consensus       208 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d  241 (250)
                        +..... ..+...+..+++.+ +++++++.+..
T Consensus       280 --~~~~~~~~~~~~~p~~va~~~-~g~l~v~~~~~  311 (343)
T 2qe8_A          280 --AYKLLVTDEKLSWTDSFNFGS-DGYLYFDCNQL  311 (343)
T ss_dssp             --EEEEEEECGGGSCEEEEEECT-TSCEEEEECCG
T ss_pred             --CEEEEEECCceecCCeeEECC-CCcEEEEeCcc
Confidence              221111 12245688999987 78777776643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.26  E-value=2e-12  Score=99.00  Aligned_cols=167  Identities=12%  Similarity=0.080  Sum_probs=89.4

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |+.||.++|+.+.+++ .  +.+.+..+..++. ++++++.||.|+.||..+|+.+..+...            .+..+ 
T Consensus        21 v~a~d~~tG~~~W~~~-~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~------------~~~~~-   83 (369)
T 2hz6_A           21 LHAVSKRTGSIKWTLK-E--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFT------------IPELV-   83 (369)
T ss_dssp             EEEEETTTCCEEEEEE-C--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCC------------HHHHH-
T ss_pred             EEEEECCCCCEEEEec-C--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeecc------------Ccccc-
Confidence            7889999999999998 5  5666666677777 7888899999999999999887766532            01111 


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccc
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV  161 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (250)
                        ..+|..   ..+..+++++.|+.|+.||.++|+.......                                      
T Consensus        84 --~~sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~--------------------------------------  120 (369)
T 2hz6_A           84 --QASPCR---SSDGILYMGKKQDIWYVIDLLTGEKQQTLSS--------------------------------------  120 (369)
T ss_dssp             --TTCSCC--------CCCCEEEEEEEEECCC------------------------------------------------
T ss_pred             --ccCceE---ecCCEEEEEeCCCEEEEEECCCCcEEEEecC--------------------------------------
Confidence              112210   0345677888899999999998875433211                                      


Q ss_pred             cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC---CeEEEe
Q 025649          162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES---ENLVVC  238 (250)
Q Consensus       162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~s~  238 (250)
                        +.    ...++   |++..+++++.|+.|+.||.++++..-         ....+.  ....++.. +.   ..++++
T Consensus       121 --~~----~~~~~---p~~~~v~~~~~dg~v~a~d~~tG~~~W---------~~~~~~--~~~~~~~~-~~~~~~~v~~~  179 (369)
T 2hz6_A          121 --AF----ADSLS---PSTSLLYLGRTEYTITMYDTKTRELRW---------NATYFD--YAASLPED-DVDYKMSHFVS  179 (369)
T ss_dssp             ---------------------EEEEEEEEEEECCCSSSSSCCC---------EEEEEE--ECCBCCCC-CTTCCCCEEEE
T ss_pred             --CC----ccccc---ccCCEEEEEecCCEEEEEECCCCCEEE---------eEeccc--ccCccccC-CccccceEEEE
Confidence              11    12345   567788888899999999999985331         111110  11122221 11   357778


Q ss_pred             eCCceEEEEeC
Q 025649          239 DTSKVVKVYSI  249 (250)
Q Consensus       239 ~~d~~i~vw~~  249 (250)
                      +.||.|+.||.
T Consensus       180 ~~dg~v~a~d~  190 (369)
T 2hz6_A          180 NGDGLVVTVDS  190 (369)
T ss_dssp             ETSCEEEEECT
T ss_pred             CCCCEEEEEEC
Confidence            88999999885

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.26  E-value=7.2e-09  Score=80.36  Aligned_cols=201  Identities=9%  Similarity=-0.034  Sum_probs=120.9

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      .....|+|++++. ++++...++.|++||..+++........              .... ++++|      +++.|+++
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~~--------------~~~~-ia~~~------~g~~l~~~  188 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPGF--------------KGGK-PAVTK------DKQRVYSI  188 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEEETC--------------CBCB-CEECT------TSSEEEEE
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEeeccC--------------CCCc-eeEec------CCCcEEEE
Confidence            3678999999998 8888888899999999876654443311              2234 88888      88888888


Q ss_pred             eCCC--eEEEEeCCCceeEeec---cCCCCCCccceeecc-cceeEEEee-----eeeeccCeeeeeecc--ccCccccE
Q 025649          102 KGDG--VVDVINIESELNISRS---KSTTKPLKGSQSTSK-VNIRDAEME-----ILDQSGGKRLHLDYS--VGGHTAAA  168 (250)
Q Consensus       102 ~~d~--~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~h~~~v  168 (250)
                      ..++  .|.+++...+......   .........+++++| ++.+++...     .++.... ....+..  ..++...-
T Consensus       189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~-~~~~~~~~~~~g~~~~~  267 (409)
T 3hrp_A          189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ-EVTLIKQLELSGSLGTN  267 (409)
T ss_dssp             BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC-CEEEEEECCCCSCCCCS
T ss_pred             ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC-CEEEEecccccCCCCCC
Confidence            8765  7999998765543222   121235678899999 555554211     1111111 1111100  11222222


Q ss_pred             -E-EEEeecCCC-CCcEEEEeeCCCeEEEEecCCCcceecccc--cceee--eeeccCCceeEEEecCCCCCeEEEee-C
Q 025649          169 -S-CVAFSMFGE-RGKYLISGGNDKLVKVWDCSRFQGVQTSIN--NDLLI--KNINLNKKVNWLCTTPTESENLVVCD-T  240 (250)
Q Consensus       169 -~-~~~~~p~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~-~  240 (250)
                       . .++|+   | ++.++++-..++.|+.|+............  .....  .....-.....+++.+ +|+++++-. .
T Consensus       268 P~~~ia~~---p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~  343 (409)
T 3hrp_A          268 PGPYLIYY---FVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFK  343 (409)
T ss_dssp             SCCEEEEE---TTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTT
T ss_pred             ccccEEEe---CCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCC
Confidence             2 89999   7 577777777789999999765311000000  00000  0000123478899997 788777766 7


Q ss_pred             CceEEEEeC
Q 025649          241 SKVVKVYSI  249 (250)
Q Consensus       241 d~~i~vw~~  249 (250)
                      ++.|+.|++
T Consensus       344 ~~~I~~~~~  352 (409)
T 3hrp_A          344 GYCLRKLDI  352 (409)
T ss_dssp             TCEEEEEET
T ss_pred             CCEEEEEEC
Confidence            889999984

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.24  E-value=9.6e-09  Score=76.46  Aligned_cols=161  Identities=9%  Similarity=0.016  Sum_probs=103.0

Q ss_pred             eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649           12 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML   91 (250)
Q Consensus        12 ~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   91 (250)
                      .+..+. .+........|+|+++.++++...++.|..|+. +++ ...+...             ...+.++++.+    
T Consensus        36 ~~~~l~-~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~-------------~~~~~gl~~d~----   95 (305)
T 3dr2_A           36 RLLTLY-DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDA-------------TAFTNGNAVDA----   95 (305)
T ss_dssp             CCEEEE-CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEES-------------CSCEEEEEECT----
T ss_pred             ceEEEe-cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCC-------------CCccceeeECC----
Confidence            344455 556677899999999867788888999999998 454 3333322             35678899998    


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCceeEeecc---CCCCCCccceeecccceeEEEe---eeee-----------------
Q 025649           92 DKTNKICVVAKGDGVVDVINIESELNISRSK---STTKPLKGSQSTSKVNIRDAEM---EILD-----------------  148 (250)
Q Consensus        92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~-----------------  148 (250)
                        +++++++...++.|.+||.. ++......   ......+..++++|+|+.+++.   +...                 
T Consensus        96 --dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~  172 (305)
T 3dr2_A           96 --QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVY  172 (305)
T ss_dssp             --TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEE
T ss_pred             --CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEE
Confidence              89877776677899999986 44322211   1112346789999999988742   1110                 


Q ss_pred             eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC------CeEEEEecCCC
Q 025649          149 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND------KLVKVWDCSRF  200 (250)
Q Consensus       149 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d------~~i~iwd~~~~  200 (250)
                      ..+....+. ..+. .......++|+   |+++.|+.+...      +.|.+||+...
T Consensus       173 ~~d~~~g~~-~~~~-~~~~p~gl~~s---pdg~~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          173 RLPPDGSPL-QRMA-DLDHPNGLAFS---PDEQTLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             EECSSSCCC-EEEE-EESSEEEEEEC---TTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred             EEcCCCCcE-EEEe-cCCCCcceEEc---CCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence            001100110 1111 23345788999   899877766554      78999998753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.24  E-value=9.3e-09  Score=77.32  Aligned_cols=195  Identities=9%  Similarity=-0.033  Sum_probs=119.8

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  102 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  102 (250)
                      ...+..|+|++..++++...++.|..||..+++. ..+.              .+..+.++++.|      +++++++. 
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~--------------~~~~v~~i~~~~------dg~l~v~~-  107 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK-TVHA--------------LPFMGSALAKIS------DSKQLIAS-  107 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEE--------------CSSCEEEEEEEE------TTEEEEEE-
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEE--------------CCCcceEEEEeC------CCeEEEEE-
Confidence            4578899998665778888889999999987653 2333              235688899988      88877654 


Q ss_pred             CCCeEEEEeCCCceeEeeccCC---CCCCccceeecccceeEEEeeee-------eeccCeeeeeeccccCccccEEEEE
Q 025649          103 GDGVVDVINIESELNISRSKST---TKPLKGSQSTSKVNIRDAEMEIL-------DQSGGKRLHLDYSVGGHTAAASCVA  172 (250)
Q Consensus       103 ~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~h~~~v~~~~  172 (250)
                      .+ .|.+||..+++........   ....+..+.++|+|++++.....       ........+ +..+..+......++
T Consensus       108 ~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~i~  185 (326)
T 2ghs_A          108 DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFADISIPNSIC  185 (326)
T ss_dssp             TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEEESSEEEEE
T ss_pred             CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc-EEEeeCCCcccCCeE
Confidence            44 4999999887654332211   12357789999999876632110       000000011 111112223467889


Q ss_pred             eecCCCCCcEEE-EeeCCCeEEEEecC--CC-cceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          173 FSMFGERGKYLI-SGGNDKLVKVWDCS--RF-QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       173 ~~p~~~~~~~l~-s~~~d~~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      |+   |+++.++ +.+.++.|.+||+.  ++ ....    ...+..+......+..+++.+ +|.+.++...++.|.+||
T Consensus       186 ~s---~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~----~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d  257 (326)
T 2ghs_A          186 FS---PDGTTGYFVDTKVNRLMRVPLDARTGLPTGK----AEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYD  257 (326)
T ss_dssp             EC---TTSCEEEEEETTTCEEEEEEBCTTTCCBSSC----CEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEEC
T ss_pred             Ec---CCCCEEEEEECCCCEEEEEEcccccCCcccC----ceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEEC
Confidence            99   8987664 44567899999986  43 2110    012222222344567788876 777666665667888887


Q ss_pred             C
Q 025649          249 I  249 (250)
Q Consensus       249 ~  249 (250)
                      .
T Consensus       258 ~  258 (326)
T 2ghs_A          258 T  258 (326)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.23  E-value=3.9e-09  Score=81.12  Aligned_cols=211  Identities=13%  Similarity=-0.018  Sum_probs=130.8

Q ss_pred             CcEEEEcccc----eeeeeec------cCCCCCeeeEEEcCCCCeEEEEecCC------CeEEEEEccCCCCccceecCC
Q 025649            1 MWQIIDIRQH----CLYKSLR------AGHSSICSSVQFIPWKPWEVISGGLD------SKLVMWDFSKGRPNKIVNFGL   64 (250)
Q Consensus         1 ti~iwd~~~~----~~~~~l~------~~h~~~v~~l~~~~~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~   64 (250)
                      +|.++|+.+.    +..+++.      ......-..+.++|+|  +++++..+      |.|.+.|..+++.+.++..+.
T Consensus       107 ~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~  184 (462)
T 2ece_A          107 RIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDR  184 (462)
T ss_dssp             CEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBC
T ss_pred             eEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCC
Confidence            4789998765    6666661      0112245677889999  56666555      789999999999988887441


Q ss_pred             CCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe-------------------CCCeEEEEeCCCceeEeeccCC-
Q 025649           65 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-------------------GDGVVDVINIESELNISRSKST-  124 (250)
Q Consensus        65 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-------------------~d~~i~~~d~~~~~~~~~~~~~-  124 (250)
                      .          ....-+.+.|+|      +++.+++..                   .+.+|.+||+.+++....+... 
T Consensus       185 ~----------~~~~~Yd~~~~p------~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~  248 (462)
T 2ece_A          185 G----------DQYLAYDFWWNL------PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE  248 (462)
T ss_dssp             T----------TCCCCCCEEEET------TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred             C----------CccccceEEECC------CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence            0          011234566787      888888874                   4789999999998777766654 


Q ss_pred             CCCCccce--eecccceeEEEeee-----eeeccC---------eeeeee--------cccc-------CccccEEEEEe
Q 025649          125 TKPLKGSQ--STSKVNIRDAEMEI-----LDQSGG---------KRLHLD--------YSVG-------GHTAAASCVAF  173 (250)
Q Consensus       125 ~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~---------~~~~~~--------~~~~-------~h~~~v~~~~~  173 (250)
                      .......+  +++|+++++.....     .+....         ...+.+        ..+.       +-......+.+
T Consensus       249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l  328 (462)
T 2ece_A          249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI  328 (462)
T ss_dssp             TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred             CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence            22334445  45999988774333     111110         000100        0110       00234678899


Q ss_pred             ecCCCCCcEEEEeeC-CCeEEEEecCCCcceecccccceeeeeecc--------------CCceeEEEecCCCCCeEEEe
Q 025649          174 SMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNINL--------------NKKVNWLCTTPTESENLVVC  238 (250)
Q Consensus       174 ~p~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~l~s~  238 (250)
                      +   ++|++|..+.. .+.|.+||+......      +++......              ......++++| ||++|+++
T Consensus       329 S---~DGrfLYVSnrg~d~VavfdV~d~~~~------~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVa  398 (462)
T 2ece_A          329 S---LDDKFLYLSLWGIGEVRQYDISNPFKP------VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVT  398 (462)
T ss_dssp             C---TTSCEEEEEETTTTEEEEEECSSTTSC------EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEE
T ss_pred             C---CCCCEEEEEeCCCCEEEEEEecCCCCc------EEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEE
Confidence            9   89999888765 789999998643211      222222111              11357788887 89888887


Q ss_pred             e
Q 025649          239 D  239 (250)
Q Consensus       239 ~  239 (250)
                      .
T Consensus       399 N  399 (462)
T 2ece_A          399 N  399 (462)
T ss_dssp             C
T ss_pred             c
Confidence            7

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.20  E-value=1.9e-09  Score=81.96  Aligned_cols=213  Identities=10%  Similarity=0.022  Sum_probs=126.7

Q ss_pred             CcEEEEcccceeeeeeccCC------CCCeeeEEEcCCCCeEEEEec-CCCeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGH------SSICSSVQFIPWKPWEVISGG-LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h------~~~v~~l~~~~~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~   73 (250)
                      +|.+||..+++.+.++..+.      ...-..++|+|||+.++++.. .++.|.++|+.+++.+.++..+          
T Consensus       110 ~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~----------  179 (386)
T 3sjl_D          110 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP----------  179 (386)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----------
T ss_pred             EEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC----------
Confidence            37899999999998886221      124568999999994444433 3789999999999998888744          


Q ss_pred             ccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCC-ceeEeecc---CCCC-CCccceeec-ccceeEEE----
Q 025649           74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRSK---STTK-PLKGSQSTS-KVNIRDAE----  143 (250)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~---~~~~-~~~~~~~~~-~~~~~~~~----  143 (250)
                          . . ... .|     ...+.+++.+.||.+.+.++.. ++......   .... .......|. ++|++++.    
T Consensus       180 ----g-~-~~~-~P-----~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g  247 (386)
T 3sjl_D          180 ----D-C-YHI-FP-----TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTG  247 (386)
T ss_dssp             ----S-E-EEE-EE-----EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTS
T ss_pred             ----C-c-cee-ec-----CCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCC
Confidence                1 1 111 23     2456777888899999998876 55422111   1111 111223453 67765442    


Q ss_pred             -eeeeeeccCeeeeeecccc---------C-ccccEEEEEeecCCCCCcEEEEeeC----------CCeEEEEecCCCcc
Q 025649          144 -MEILDQSGGKRLHLDYSVG---------G-HTAAASCVAFSMFGERGKYLISGGN----------DKLVKVWDCSRFQG  202 (250)
Q Consensus       144 -~~~~~~~~~~~~~~~~~~~---------~-h~~~v~~~~~~p~~~~~~~l~s~~~----------d~~i~iwd~~~~~~  202 (250)
                       +...|.... ..+.+..+.         + .......++++   ++++.+.....          .+.|.+.|+++.+ 
T Consensus       248 ~V~v~d~~~~-~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~---~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k-  322 (386)
T 3sjl_D          248 KIHQIDLSSG-DAKFLPAVEALTEAERADGWRPGGWQQVAYH---RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE-  322 (386)
T ss_dssp             EEEEEECTTS-SCEECCCEESSCHHHHHTTEEECSSSCEEEE---TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC-
T ss_pred             EEEEEECCCC-cceeecceeccccccccccccCCCcceeeEC---CCCCeEEEEeccccccccCCCCCEEEEEECCCCe-
Confidence             111222111 111111111         1 11223346778   77776666532          2579999999973 


Q ss_pred             eecccccceeeeeeccCCceeEEEecCCCCC-eEEEe-eCCceEEEEeCC
Q 025649          203 VQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVC-DTSKVVKVYSIS  250 (250)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~-~~d~~i~vw~~~  250 (250)
                              .+..+ .-...+++|++++ |++ +|++. ..++.|.++|..
T Consensus       323 --------v~~~i-~vg~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          323 --------RLAKF-EMGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             --------EEEEE-EEEEEECEEEECS-SSSCEEEEEETTTTEEEEEETT
T ss_pred             --------EEEEE-ECCCCcceEEECC-CCCeEEEEEcCCCCeEEEEECC
Confidence                    33332 2234788999998 765 66664 458999999963

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.17  E-value=3.1e-09  Score=88.03  Aligned_cols=213  Identities=8%  Similarity=0.029  Sum_probs=116.3

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC-------------eEEEEEccCCCCccceecCCCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS-------------KLVMWDFSKGRPNKIVNFGLPEN   67 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg-------------~v~iwd~~~~~~~~~~~~~~~~~   67 (250)
                      +|++||+++++.+....  +......++|+ |++ .|+.++.+.             .|++|++.++......-...   
T Consensus       156 ~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-Dg~-~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~---  228 (693)
T 3iuj_A          156 EIHLMDVESKQPLETPL--KDVKFSGISWL-GNE-GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA---  228 (693)
T ss_dssp             EEEEEETTTCSEEEEEE--EEEESCCCEEE-TTT-EEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC---
T ss_pred             EEEEEECCCCCCCcccc--CCceeccEEEe-CCC-EEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec---
Confidence            47899999998654311  11123678899 998 566666653             49999987765422222110   


Q ss_pred             CCCCCccc-CCCceeEEecCCCcccCCCCCEEEEEeC----CCeEEEEeCCCce-eEeeccCCCCCCccceeecccceeE
Q 025649           68 NGNAGQCY-NPAFVHAIAIPDADMLDKTNKICVVAKG----DGVVDVINIESEL-NISRSKSTTKPLKGSQSTSKVNIRD  141 (250)
Q Consensus        68 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  141 (250)
                            .. ++....++.++|      ++++|+....    ++.|.++|+.++. ....+.... ...... ++++|..+
T Consensus       229 ------~~~~~~~~~~~~~Sp------Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~-~~~~~~-~~~~g~~l  294 (693)
T 3iuj_A          229 ------IPAQHHRYVGATVTE------DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL-DADVSL-VDNKGSTL  294 (693)
T ss_dssp             ------SGGGCCSEEEEEECT------TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS-SSCEEE-EEEETTEE
T ss_pred             ------CCCCCeEEEEEEEcC------CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC-CceEEE-EeccCCEE
Confidence                  00 123467888998      9998865432    3589999998753 222222221 222222 56666655


Q ss_pred             EEeeeeeec-------cCeeee--eeccccCccccEEEEEeecCCCCCcEEEEeeC-CC--eEEEEecCCCcceeccccc
Q 025649          142 AEMEILDQS-------GGKRLH--LDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DK--LVKVWDCSRFQGVQTSINN  209 (250)
Q Consensus       142 ~~~~~~~~~-------~~~~~~--~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~  209 (250)
                      +.....+..       ......  ....+..|...+.  .|+   +++++|+.... ++  .|++||+..+.        
T Consensus       295 ~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s---~~g~~lv~~~~~~g~~~l~~~d~~g~~--------  361 (693)
T 3iuj_A          295 YLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVH---SGSGYLFAEYMVDATARVEQFDYEGKR--------  361 (693)
T ss_dssp             EEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEE---EETTEEEEEEEETTEEEEEEECTTSCE--------
T ss_pred             EEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEE---EECCEEEEEEEECCeeEEEEEECCCCe--------
Confidence            522211110       000100  1123444554444  778   67777766654 44  68999988642        


Q ss_pred             ceeeeeeccCCceeEEEecCCCCCeEEEeeCC----ceEEEEeC
Q 025649          210 DLLIKNINLNKKVNWLCTTPTESENLVVCDTS----KVVKVYSI  249 (250)
Q Consensus       210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~vw~~  249 (250)
                       ...........+..+.+++ ++..++....+    +.|..||+
T Consensus       362 -~~~l~~p~~~~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          362 -VREVALPGLGSVSGFNGKH-DDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             -EEEECCSSSSEEEECCCCT-TCSCEEEEEECSSSCCEEEEECT
T ss_pred             -eEEeecCCCceEEeeecCC-CCCEEEEEecCCCCCCEEEEEEC
Confidence             1111123334566666666 55544443333    77888875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.14  E-value=2.5e-08  Score=71.31  Aligned_cols=200  Identities=12%  Similarity=0.003  Sum_probs=118.4

Q ss_pred             ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649           10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD   87 (250)
Q Consensus        10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   87 (250)
                      -+.++++......-...|.|+ ++. ++.+.+.+|  .|+.+|+.+++.+..+..+            .......+++. 
T Consensus        31 ~~vv~~~phd~~~ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~l~------------~~~FgeGit~~-   95 (262)
T 3nol_A           31 YQIVHSYPHDTKAFTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQIELG------------KRYFGEGISDW-   95 (262)
T ss_dssp             EEEEEEEECCTTCEEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEEECC------------TTCCEEEEEEE-
T ss_pred             eEEEEEecCCCCcccceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEEecC------------CccceeEEEEe-
Confidence            355667762223345899998 565 777777766  8999999999998888754            11112234433 


Q ss_pred             CcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-e--eeeccCeeeeeeccccC-
Q 025649           88 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-I--LDQSGGKRLHLDYSVGG-  163 (250)
Q Consensus        88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~-  163 (250)
                            .+++.+..-.++.+.+||..+.+.+..+....    ....++++++.+..+. .  ....+....+.+.++.. 
T Consensus        96 ------g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~  165 (262)
T 3nol_A           96 ------KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT  165 (262)
T ss_dssp             ------TTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE
T ss_pred             ------CCEEEEEEeeCCEEEEEECccCcEEEEEECCC----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec
Confidence                  23444445578999999999999888777642    3345556676665321 1  11112222333333322 


Q ss_pred             ---cc-ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee---eeccCCceeEEEecCCCCCeEE
Q 025649          164 ---HT-AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK---NINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       164 ---h~-~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                         .. ..++.+.|.    +|+..+..-.+..|.+.|.++++.........+...   ...-....+.|++.|...++++
T Consensus       166 ~~g~~~~~lNELe~~----~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfV  241 (262)
T 3nol_A          166 AHGEELPELNELEWV----DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFV  241 (262)
T ss_dssp             ETTEECCCEEEEEEE----TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEE
T ss_pred             cCCccccccceeEEE----CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEE
Confidence               11 334567775    677666666788999999999865533222111110   0111235789999985444455


Q ss_pred             Ee
Q 025649          237 VC  238 (250)
Q Consensus       237 s~  238 (250)
                      +|
T Consensus       242 TG  243 (262)
T 3nol_A          242 TG  243 (262)
T ss_dssp             EE
T ss_pred             EC
Confidence            54

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.12  E-value=6e-09  Score=86.31  Aligned_cols=196  Identities=10%  Similarity=-0.034  Sum_probs=110.5

Q ss_pred             CCCCCeeeEEEcCCCCeEEE-----EecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649           19 GHSSICSSVQFIPWKPWEVI-----SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK   93 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~-----s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (250)
                      +|...+..++|||||+ +|+     .|+...+|++||+.+++.+.... .             .....+++|+       
T Consensus       126 ~~~~~l~~~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~-------------~~k~~~~~Ws-------  183 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGR-ILAYSLSLAGSDWREIHLMDVESKQPLETPL-K-------------DVKFSGISWL-------  183 (693)
T ss_dssp             TSCCEEEEEEECTTSS-EEEEEEECSSCCEEEEEEEETTTCSEEEEEE-E-------------EEESCCCEEE-------
T ss_pred             CCcEEEEEEEECCCCC-EEEEEEecCCCceEEEEEEECCCCCCCcccc-C-------------CceeccEEEe-------
Confidence            4566788999999999 566     23444689999999987543211 1             0001233443       


Q ss_pred             CCCEEEEEeCCC-------------eEEEEeCCCcee--EeeccCC--CCCCccceeecccceeEEEeeeeeecc-----
Q 025649           94 TNKICVVAKGDG-------------VVDVINIESELN--ISRSKST--TKPLKGSQSTSKVNIRDAEMEILDQSG-----  151 (250)
Q Consensus        94 ~~~~l~~~~~d~-------------~i~~~d~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  151 (250)
                      |++.|+.++.+.             .|++|++.++..  .......  +......+.++|||++++.........     
T Consensus       184 Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~  263 (693)
T 3iuj_A          184 GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV  263 (693)
T ss_dssp             TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred             CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence            677777777663             499999987543  1112221  123467789999999887322211110     


Q ss_pred             --Ceee-eeeccccCccccEEEEEeecCCCCCcEEEEeeCC---CeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649          152 --GKRL-HLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL  225 (250)
Q Consensus       152 --~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (250)
                        .... .....+..+....... +++  .++.+++....+   +.|..+|+.++..       .....+..|...+.  
T Consensus       264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~--~g~~l~~~t~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~--  331 (693)
T 3iuj_A          264 KDLSQENAPLLTVQGDLDADVSL-VDN--KGSTLYLLTNRDAPNRRLVTVDAANPGP-------AHWRDLIPERQQVL--  331 (693)
T ss_dssp             EETTSTTCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEEECCCSSCE--
T ss_pred             EECCCCCCceEEEeCCCCceEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCc-------cccEEEecCCCCEE--
Confidence              0000 0122333344444444 441  334455555443   6899999988632       11234455655554  


Q ss_pred             EecCCCCCeEEEee-CCc--eEEEEeC
Q 025649          226 CTTPTESENLVVCD-TSK--VVKVYSI  249 (250)
Q Consensus       226 ~~~~~~~~~l~s~~-~d~--~i~vw~~  249 (250)
                      .|++ +++.|+... .++  .|++|++
T Consensus       332 ~~s~-~g~~lv~~~~~~g~~~l~~~d~  357 (693)
T 3iuj_A          332 TVHS-GSGYLFAEYMVDATARVEQFDY  357 (693)
T ss_dssp             EEEE-ETTEEEEEEEETTEEEEEEECT
T ss_pred             EEEE-ECCEEEEEEEECCeeEEEEEEC
Confidence            6776 666666554 454  6777775

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.10  E-value=8.9e-08  Score=67.87  Aligned_cols=201  Identities=10%  Similarity=-0.031  Sum_probs=119.9

Q ss_pred             ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649           10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD   87 (250)
Q Consensus        10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   87 (250)
                      -+.+.++.+....-...|.|++ +. ++.+.+.+|  .|+.+|+.+++.+..+..+            ....-..+++. 
T Consensus         9 ~~v~~~~phd~~~ftqGL~~~~-~~-LyestG~~g~S~v~~vD~~tgkv~~~~~l~------------~~~fgeGi~~~-   73 (243)
T 3mbr_X            9 YRVVKRYPHDTTAFTEGLFYLR-GH-LYESTGETGRSSVRKVDLETGRILQRAEVP------------PPYFGAGIVAW-   73 (243)
T ss_dssp             EEEEEEEECCTTCCEEEEEEET-TE-EEEEECCTTSCEEEEEETTTCCEEEEEECC------------TTCCEEEEEEE-
T ss_pred             eEEEEEcCCCCccccccEEEEC-CE-EEEECCCCCCceEEEEECCCCCEEEEEeCC------------CCcceeEEEEe-
Confidence            3566677622234577999987 44 677777754  8999999999998888754            11122334433 


Q ss_pred             CcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE-eeeeee--ccCeeeeeeccccCc
Q 025649           88 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE-MEILDQ--SGGKRLHLDYSVGGH  164 (250)
Q Consensus        88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~h  164 (250)
                            .+++....-.++.+.+||..+.+.+.++....    ....+.+++..+.. .+....  .+....+.+.++...
T Consensus        74 ------~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~----~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~  143 (243)
T 3mbr_X           74 ------RDRLIQLTWRNHEGFVYDLATLTPRARFRYPG----EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT  143 (243)
T ss_dssp             ------TTEEEEEESSSSEEEEEETTTTEEEEEEECSS----CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred             ------CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC----CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEc
Confidence                  34555555678999999999999888877653    22344466665542 221111  122233333333221


Q ss_pred             --c---ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee----eccCCceeEEEecCCCCCeE
Q 025649          165 --T---AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN----INLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       165 --~---~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l  235 (250)
                        .   ..++.+.+.    +|+.++..-.+..|.+.|.++++......-..+....    ..-....+.|++.|...+++
T Consensus       144 ~~g~~~~~lNeLe~~----~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf  219 (243)
T 3mbr_X          144 AGGRPLDNLNELEWV----NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLF  219 (243)
T ss_dssp             ETTEECCCEEEEEEE----TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred             cCCcccccceeeEEe----CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence              1   245667775    6777766666889999999999655332221111111    11224578999998555555


Q ss_pred             EEee
Q 025649          236 VVCD  239 (250)
Q Consensus       236 ~s~~  239 (250)
                      +||-
T Consensus       220 VTGK  223 (243)
T 3mbr_X          220 VTGK  223 (243)
T ss_dssp             EEET
T ss_pred             EECC
Confidence            5553

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.10  E-value=1.2e-07  Score=73.07  Aligned_cols=230  Identities=10%  Similarity=-0.045  Sum_probs=130.0

Q ss_pred             cEEEEccc-----ceeeeeeccCCC-CCeeeEEE-----------c--CCCCeEEEEecCCCeEEEEEccCC----CCcc
Q 025649            2 WQIIDIRQ-----HCLYKSLRAGHS-SICSSVQF-----------I--PWKPWEVISGGLDSKLVMWDFSKG----RPNK   58 (250)
Q Consensus         2 i~iwd~~~-----~~~~~~l~~~h~-~~v~~l~~-----------~--~~~~~~l~s~s~dg~v~iwd~~~~----~~~~   58 (250)
                      |.+.|+..     ++.+..+.-.+. +....+.|           +  ++++.+++++..+++|.++|+.+.    +..+
T Consensus        45 la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k  124 (462)
T 2ece_A           45 IAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIK  124 (462)
T ss_dssp             EEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEE
T ss_pred             EEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeee
Confidence            34566665     666665542221 13333444           6  788867788899999999999754    3333


Q ss_pred             ceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC------CeEEEEeCCCceeEeeccCCCC--CCcc
Q 025649           59 IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD------GVVDVINIESELNISRSKSTTK--PLKG  130 (250)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~--~~~~  130 (250)
                      ++...      ..........-+.+...|      ++ +++++..+      +.|.++|.++.+.+........  ....
T Consensus       125 ~ie~~------~~~~~~g~s~Ph~~~~~p------dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Y  191 (462)
T 2ece_A          125 VIEPE------EVKKVSGYSRLHTVHCGP------DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAY  191 (462)
T ss_dssp             EECHH------HHHHHHCEEEEEEEEECS------SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCC
T ss_pred             eechh------hcccccCCCcccceeECC------Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccc
Confidence            33100      000000012345667777      88 66666655      7899999999998887764422  2344


Q ss_pred             ceeecccceeEEEeeeee-----------------------eccCeeeeeeccccC--ccccEEEEEe--ecCCCCCcEE
Q 025649          131 SQSTSKVNIRDAEMEILD-----------------------QSGGKRLHLDYSVGG--HTAAASCVAF--SMFGERGKYL  183 (250)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~--h~~~v~~~~~--~p~~~~~~~l  183 (250)
                      .+.|+|+++.++++. |-                       .++....+.+.++..  .......+.|  +   |+++++
T Consensus       192 d~~~~p~~~~mvsS~-wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~---Pdg~~a  267 (462)
T 2ece_A          192 DFWWNLPNEVLVSSE-WAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHD---PTKLMG  267 (462)
T ss_dssp             CEEEETTTTEEEECB-CCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSS---TTCCEE
T ss_pred             eEEECCCCCEEEEcc-CcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeEC---CCCCEE
Confidence            577899999888542 10                       011111222333332  1123445555  7   899888


Q ss_pred             EEee------CCCeEEEEecCCCcceec--ccccc--eeeee-------eccCCceeEEEecCCCCCeEEEeeC-CceEE
Q 025649          184 ISGG------NDKLVKVWDCSRFQGVQT--SINND--LLIKN-------INLNKKVNWLCTTPTESENLVVCDT-SKVVK  245 (250)
Q Consensus       184 ~s~~------~d~~i~iwd~~~~~~~~~--~~~~~--~~~~~-------~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~  245 (250)
                      ..++      .+++|.+|....+.....  ...+.  ....+       .+-...+..+.+++ |+++|+++.. .+.|.
T Consensus       268 YV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-DGrfLYVSnrg~d~Va  346 (462)
T 2ece_A          268 FINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL-DDKFLYLSLWGIGEVR  346 (462)
T ss_dssp             EEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT-TSCEEEEEETTTTEEE
T ss_pred             EEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC-CCCEEEEEeCCCCEEE
Confidence            7776      466888877655321110  00000  00000       00124577888887 8888877664 68999


Q ss_pred             EEeC
Q 025649          246 VYSI  249 (250)
Q Consensus       246 vw~~  249 (250)
                      +||+
T Consensus       347 vfdV  350 (462)
T 2ece_A          347 QYDI  350 (462)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9986

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.09  E-value=6.7e-08  Score=71.89  Aligned_cols=207  Identities=9%  Similarity=-0.052  Sum_probs=119.2

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |..|+. +++ ...+. .+...+..++++++|+ ++++...++.|.+|+.. ++. ..+....      ..  .....+.
T Consensus        69 i~~~~~-~g~-~~~~~-~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~~-~~~~~~~------~~--~~~~~~~  134 (305)
T 3dr2_A           69 VLGWRE-DGT-VDVLL-DATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQA-HLLVGRY------AG--KRLNSPN  134 (305)
T ss_dssp             EEEEET-TSC-EEEEE-ESCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCE-EEEECEE------TT--EECSCCC
T ss_pred             EEEEeC-CCC-EEEEe-CCCCccceeeECCCCC-EEEEECCCCEEEEECCC-CCE-EEEEecc------CC--CccCCCC
Confidence            456665 344 34455 5667789999999998 77766667899999985 542 2221010      00  0112356


Q ss_pred             EEecCCCcccCCCCCEEEE----EeC-------------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe
Q 025649           82 AIAIPDADMLDKTNKICVV----AKG-------------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM  144 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~----~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (250)
                      .+++.|      +|+++++    |..             .+.|..+|..+++.....   .......++|+|+++.+...
T Consensus       135 ~i~~d~------dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~gl~~spdg~~lyv~  205 (305)
T 3dr2_A          135 DLIVAR------DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPNGLAFSPDEQTLYVS  205 (305)
T ss_dssp             CEEECT------TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEEEEEECTTSSEEEEE
T ss_pred             CEEECC------CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCcceEEcCCCCEEEEE
Confidence            788888      8988886    332             356888888766544332   12455679999999866533


Q ss_pred             eee-------eec--cCe--eeeeeccc-cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceeccccccee
Q 025649          145 EIL-------DQS--GGK--RLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL  212 (250)
Q Consensus       145 ~~~-------~~~--~~~--~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  212 (250)
                      ...       ...  ...  .......+ .........+++.   ++|++.++. .+ .|.+||...          +.+
T Consensus       206 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d---~~G~lwv~~-~~-gv~~~~~~g----------~~~  270 (305)
T 3dr2_A          206 QTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD---RGGWLWSSS-GT-GVCVFDSDG----------QLL  270 (305)
T ss_dssp             ECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC---TTSCEEECC-SS-EEEEECTTS----------CEE
T ss_pred             ecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC---CCCCEEEec-CC-cEEEECCCC----------CEE
Confidence            221       010  000  00000011 1112334567888   888855544 44 599999854          333


Q ss_pred             eeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          213 IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       213 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ..+..+. .+..++|.+ +++.|..++.++ +..+++
T Consensus       271 ~~~~~~~-~~~~~~f~~-d~~~L~it~~~~-l~~~~~  304 (305)
T 3dr2_A          271 GHIPTPG-TASNCTFDQ-AQQRLFITGGPC-LWMLPL  304 (305)
T ss_dssp             EEEECSS-CCCEEEECT-TSCEEEEEETTE-EEEEEC
T ss_pred             EEEECCC-ceeEEEEeC-CCCEEEEEcCCe-EEEEEC
Confidence            3333333 588899985 777777777665 443443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.08  E-value=9.4e-08  Score=68.37  Aligned_cols=199  Identities=10%  Similarity=-0.018  Sum_probs=120.9

Q ss_pred             eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649           11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM   90 (250)
Q Consensus        11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   90 (250)
                      +.+.++......-...|.|+. +. ++.+.+.+|.|+.+|+++++.+..+ .+            .......+++.    
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~-~~-Ly~stG~~g~v~~iD~~Tgkv~~~~-l~------------~~~FgeGit~~----  104 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQ-GH-FFESTGHQGTLRQLSLESAQPVWME-RL------------GNIFAEGLASD----  104 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-TE-EEEEETTTTEEEECCSSCSSCSEEE-EC------------TTCCEEEEEEC----
T ss_pred             EEEEEEcCCCccccceEEEEC-CE-EEEEcCCCCEEEEEECCCCcEEeEE-CC------------CCcceeEEEEe----
Confidence            556666622234457899984 44 8888899999999999999998887 55            11122345554    


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-ee--eeccCeeeeeeccccC--cc
Q 025649           91 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-IL--DQSGGKRLHLDYSVGG--HT  165 (250)
Q Consensus        91 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~--h~  165 (250)
                         .+++.+..-.++.+.+||..+.+.+..+.....    ...++++++.+..+. ..  ...+....+.+.++..  +.
T Consensus       105 ---g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e----GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g  177 (268)
T 3nok_A          105 ---GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE----GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRG  177 (268)
T ss_dssp             ---SSCEEEEESSSCEEEEEETTTTEEEEEEECSSC----CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred             ---CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc----eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCC
Confidence               345555566789999999999998888776421    234446666665322 11  1112223333333322  11


Q ss_pred             ---ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee----eeccCCceeEEEecCCCCCeEEEe
Q 025649          166 ---AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK----NINLNKKVNWLCTTPTESENLVVC  238 (250)
Q Consensus       166 ---~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~  238 (250)
                         ..++.+.|.    +|+..+....+..|.+.|.++++......-..+...    ...-....+.|++.|...++++||
T Consensus       178 ~~v~~lNeLe~~----dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          178 QPVELINELECA----NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EECCCEEEEEEE----TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             cccccccccEEe----CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence               235677776    677666666788999999999865532211111100    011224578999998666666666


Q ss_pred             e
Q 025649          239 D  239 (250)
Q Consensus       239 ~  239 (250)
                      -
T Consensus       254 K  254 (268)
T 3nok_A          254 K  254 (268)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.03  E-value=1.4e-07  Score=72.14  Aligned_cols=194  Identities=6%  Similarity=-0.081  Sum_probs=101.6

Q ss_pred             cEEEEcccceeeeeeccC------CCCCeeeEEEcCCCCeEEEEec-C-CCeEEEEEccCCCCccc-eecCCCC----CC
Q 025649            2 WQIIDIRQHCLYKSLRAG------HSSICSSVQFIPWKPWEVISGG-L-DSKLVMWDFSKGRPNKI-VNFGLPE----NN   68 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~------h~~~v~~l~~~~~~~~~l~s~s-~-dg~v~iwd~~~~~~~~~-~~~~~~~----~~   68 (250)
                      |.+||..+++.+..+..+      +...-..+.|+|+|+ +|+.+. . ++.|.++| .+++.+.. +..+...    ..
T Consensus        99 v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~  176 (373)
T 2mad_H           99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGA  176 (373)
T ss_pred             EEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC-EEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCC
Confidence            678999988888777521      012345899999999 566554 3 58899999 99888777 6533100    00


Q ss_pred             CCCCccc-CC---------Ccee-EEe-----cC--CC---cccCCCCCEEEEEeCCCeEEEEeCCCceeE--eeccCC-
Q 025649           69 GNAGQCY-NP---------AFVH-AIA-----IP--DA---DMLDKTNKICVVAKGDGVVDVINIESELNI--SRSKST-  124 (250)
Q Consensus        69 ~~~~~~~-~~---------~~v~-~~~-----~~--~~---~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~-  124 (250)
                      ....... ..         ..+. ...     ..  |.   ..+.+++..++..+..+.+.+.|+..+...  ..+... 
T Consensus       177 ~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~  256 (373)
T 2mad_H          177 PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALS  256 (373)
T ss_pred             CceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecC
Confidence            0000000 00         0000 000     00  00   000012222222234566777777543211  111100 


Q ss_pred             --------CCCCccceeecccceeEEEeee-------------eeeccCeeeeeeccccCccccEEEEEeecCCCCCc-E
Q 025649          125 --------TKPLKGSQSTSKVNIRDAEMEI-------------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK-Y  182 (250)
Q Consensus       125 --------~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~  182 (250)
                              .......+.++|+++.+.....             ....+....+.+.++.. .....+++|+   |+|+ +
T Consensus       257 ~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s---~Dg~~~  332 (373)
T 2mad_H          257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVA---QDGGPD  332 (373)
T ss_pred             CcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEEC---CCCCeE
Confidence                    0011223678888877663221             11112333444455543 2357899999   8998 7


Q ss_pred             EEEee-CCCeEEEEecCCCc
Q 025649          183 LISGG-NDKLVKVWDCSRFQ  201 (250)
Q Consensus       183 l~s~~-~d~~i~iwd~~~~~  201 (250)
                      ++++. .++.|.++|+.+++
T Consensus       333 l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          333 LYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EEEEcCCCCeEEEEECCCCC
Confidence            77776 48999999999983

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.97  E-value=2.4e-07  Score=76.38  Aligned_cols=109  Identities=14%  Similarity=-0.013  Sum_probs=71.2

Q ss_pred             cEEEEcccceeeeeeccCCCCC--------------------------------eeeEEEcCCCCeEEEEecCCC-----
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSI--------------------------------CSSVQFIPWKPWEVISGGLDS-----   44 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~--------------------------------v~~l~~~~~~~~~l~s~s~dg-----   44 (250)
                      |+.+|.++|+.+.++. .....                                ...++++|++. +++.++.++     
T Consensus       192 v~a~D~~tG~~~W~~~-~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~  269 (677)
T 1kb0_A          192 ITAYDAETGERKWRWF-SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSH  269 (677)
T ss_dssp             EEEEETTTCCEEEEEE-SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCH
T ss_pred             EEEEECCCCcEEEEec-cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccC
Confidence            6789999999988776 32111                                13578889888 777776654     


Q ss_pred             --------------eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCC---CEEEEEeCCCeE
Q 025649           45 --------------KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN---KICVVAKGDGVV  107 (250)
Q Consensus        45 --------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~l~~~~~d~~i  107 (250)
                                    .|..+|.++|+.+..++....+.-..   . ......-+....      +|   ..++.++.+|.+
T Consensus       270 ~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~---~-~~~~p~l~~~~~------dG~~~~~l~~~~~~G~l  339 (677)
T 1kb0_A          270 KVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY---T-STQPMILADIKI------AGKPRKVILHAPKNGFF  339 (677)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC---C-CCSCCEEEEEEE------TTEEEEEEEECCTTSEE
T ss_pred             CCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc---c-cCCCcEEEeccc------CCcEeeEEEEECCCCEE
Confidence                          59999999999988887541110000   0 000111111111      45   688999999999


Q ss_pred             EEEeCCCceeEeecc
Q 025649          108 DVINIESELNISRSK  122 (250)
Q Consensus       108 ~~~d~~~~~~~~~~~  122 (250)
                      +++|.++++.+....
T Consensus       340 ~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          340 FVLDRTNGKFISAKN  354 (677)
T ss_dssp             EEEETTTCCEEEEEE
T ss_pred             EEEECCCCCEecccc
Confidence            999999998875543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.97  E-value=9.9e-08  Score=72.22  Aligned_cols=209  Identities=5%  Similarity=-0.046  Sum_probs=117.5

Q ss_pred             CCeeeEEEcCCCCeEEEEec--CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649           22 SICSSVQFIPWKPWEVISGG--LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV   99 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~   99 (250)
                      .....++++|+|+ ++++..  .++.++||.+.+++. ..+...  .    ...+.+-..++++++.+      ++++++
T Consensus        17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~--~----~~~~~~~~~p~gv~~d~------~g~L~v   82 (343)
T 2qe8_A           17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGL-IPFPPQ--S----GNAIITFDTVLGIKSDG------NGIVWM   82 (343)
T ss_dssp             SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEE-EESCCC--C----SSCCCCCSCEEEEEECS------SSEEEE
T ss_pred             CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCe-ecCCCc--c----cCcccceeEeeEEEEcC------CCcEEE
Confidence            6789999999998 788753  234366666654432 222100  0    01112445789999998      777666


Q ss_pred             EEeC-----CCeEEEEeCCCceeEeeccCC-----CCCCccceeecccc-eeEEEeee--eeec----cCeeeeeecccc
Q 025649          100 VAKG-----DGVVDVINIESELNISRSKST-----TKPLKGSQSTSKVN-IRDAEMEI--LDQS----GGKRLHLDYSVG  162 (250)
Q Consensus       100 ~~~~-----d~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~--~~~~----~~~~~~~~~~~~  162 (250)
                      +-..     ++.|.+||+.+++....+..+     .......+++++++ ..+++...  .+..    +....+..+.+.
T Consensus        83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~  162 (343)
T 2qe8_A           83 LDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ  162 (343)
T ss_dssp             EECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred             EcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence            6544     578999999988865544332     12345788999754 44342210  1100    101111111111


Q ss_pred             Cc-----------------------------cccEEEEEeecCCCCCcEEEEeeCCC-eEEEEecCCCcceeccccccee
Q 025649          163 GH-----------------------------TAAASCVAFSMFGERGKYLISGGNDK-LVKVWDCSRFQGVQTSINNDLL  212 (250)
Q Consensus       163 ~h-----------------------------~~~v~~~~~~p~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~  212 (250)
                      +|                             ...+..++|+   |+|+.|+.+..++ .+..++........ ....+..
T Consensus       163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s---~dg~~ly~~~~~~~~l~~~~~~~~~~~~-~~~~~~~  238 (343)
T 2qe8_A          163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLD---AENEWLYLSPMHSTSMYRIKSADLSNLQ-LTDAELG  238 (343)
T ss_dssp             TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEEC---TTSCEEEEEESSCSEEEEEEHHHHTCTT-CCHHHHH
T ss_pred             CCCcccccccceeECCEEEEeccCCCceeceecccceeEec---cCCCEEEEEeCCCCeEEEEEHHHhcCCC-CChhhhh
Confidence            11                             1236889999   8998888777655 55555532110000 0000110


Q ss_pred             e--eeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          213 I--KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       213 ~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .  ...++......+++.+ +|.++++...++.|.+||.
T Consensus       239 ~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          239 SKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             TTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEET
T ss_pred             cceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEEC
Confidence            0  1123444567788987 7888888888899999985

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.96  E-value=1e-07  Score=75.83  Aligned_cols=210  Identities=11%  Similarity=-0.093  Sum_probs=127.5

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEE-c-CCCCeEEEEe------------------cCCCeEEEEEccCCCCcccee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQF-I-PWKPWEVISG------------------GLDSKLVMWDFSKGRPNKIVN   61 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~-~-~~~~~~l~s~------------------s~dg~v~iwd~~~~~~~~~~~   61 (250)
                      |.+.|+.+.++.+.+..........+++ + |+++ +++.+                  -.++.+.+.|..+.+....+.
T Consensus       114 VavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~  192 (595)
T 1fwx_A          114 VARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL  192 (595)
T ss_dssp             EEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc-EEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEE
Confidence            6788999999887443113345789998 5 9999 56555                  345689999999988888877


Q ss_pred             cCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC------------------------------------
Q 025649           62 FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG------------------------------------  105 (250)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~------------------------------------  105 (250)
                      .+              ..-..++++|      +++++++.+.+.                                    
T Consensus       193 Vg--------------g~pd~~~~sp------dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          193 VS--------------GNLDNCDADY------EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             ES--------------SCCCCEEECS------SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             eC--------------CCccceEECC------CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            54              1234566776      788777776543                                    


Q ss_pred             --eEEEEeCCC--cee-EeeccCCCCCCccceeecccceeEEEee-------eeeeccCe---------eeeeeccccCc
Q 025649          106 --VVDVINIES--ELN-ISRSKSTTKPLKGSQSTSKVNIRDAEME-------ILDQSGGK---------RLHLDYSVGGH  164 (250)
Q Consensus       106 --~i~~~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~~~~~~h  164 (250)
                        .|.+.|.++  ++. ...+...  ....++.++|||++++..+       ..+.....         ...........
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG  330 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG  330 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred             ECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence              477777776  333 2233322  4677899999999988532       22222110         00112233222


Q ss_pred             cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee-cccccceeeeeeccCCce-----eEEEecCCCCCeEEEe
Q 025649          165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ-TSINNDLLIKNINLNKKV-----NWLCTTPTESENLVVC  238 (250)
Q Consensus       165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~s~  238 (250)
                       .....++|+   ++|...++.-.|+.|.+||+....... -....+.+....-|-.+-     ..+...| ||++|+++
T Consensus       331 -~gP~h~aF~---~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~  405 (595)
T 1fwx_A          331 -LGPLHTAFD---GRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCL  405 (595)
T ss_dssp             -SCEEEEEEC---TTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEE
T ss_pred             -CCcceEEEC---CCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEc
Confidence             346889999   899545556679999999987721100 000013444444443321     2223455 89998886


Q ss_pred             e
Q 025649          239 D  239 (250)
Q Consensus       239 ~  239 (250)
                      .
T Consensus       406 N  406 (595)
T 1fwx_A          406 S  406 (595)
T ss_dssp             E
T ss_pred             C
Confidence            5

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.92  E-value=3.3e-07  Score=75.77  Aligned_cols=107  Identities=12%  Similarity=-0.005  Sum_probs=68.9

Q ss_pred             cEEEEcccceeeeeeccCC-C-----------------------------CCeeeEEEcCCCCeEEEEecCCCe------
Q 025649            2 WQIIDIRQHCLYKSLRAGH-S-----------------------------SICSSVQFIPWKPWEVISGGLDSK------   45 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h-~-----------------------------~~v~~l~~~~~~~~~l~s~s~dg~------   45 (250)
                      |+.||.++|+.+.++.... .                             .....++++|++. +++.++.++.      
T Consensus       185 v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~  263 (689)
T 1yiq_A          185 VTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKW  263 (689)
T ss_dssp             EEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHH
T ss_pred             EEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCC
Confidence            6788999999887765110 0                             1113678899887 7888887764      


Q ss_pred             -------------EEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC---EEEEEeCCCeEEE
Q 025649           46 -------------LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK---ICVVAKGDGVVDV  109 (250)
Q Consensus        46 -------------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~l~~~~~d~~i~~  109 (250)
                                   |..+|.++|+.+..++....+.-.   .. ............      +++   .++.++.+|.+++
T Consensus       264 ~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd---~~-~~~~~~l~d~~~------~G~~~~~v~~~~~~G~l~~  333 (689)
T 1yiq_A          264 RSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWD---YT-ATQHMILAELPI------DGKPRKVLMQAPKNGFFYV  333 (689)
T ss_dssp             HHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSC---CC-CCSCEEEEEEEE------TTEEEEEEEECCTTSEEEE
T ss_pred             CCCCCCCceeeeeEEEEEccCCceeEeeecCCccccc---cc-CCCCcEEEeecc------CCcEEEEEEEECCCCeEEE
Confidence                         999999999998887743100000   00 001111111111      344   7889999999999


Q ss_pred             EeCCCceeEe
Q 025649          110 INIESELNIS  119 (250)
Q Consensus       110 ~d~~~~~~~~  119 (250)
                      +|.++++.+.
T Consensus       334 lD~~tG~~l~  343 (689)
T 1yiq_A          334 IDRATGELLS  343 (689)
T ss_dssp             EETTTCCEEE
T ss_pred             EECCCCCEec
Confidence            9999998774

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.86  E-value=3.8e-10  Score=86.36  Aligned_cols=140  Identities=12%  Similarity=0.025  Sum_probs=72.8

Q ss_pred             CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEe
Q 025649           32 WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN  111 (250)
Q Consensus        32 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d  111 (250)
                      ++. .+++++.||.|..||..+|+.+..+..+               .+.+..+.+      ++..+++++.|+.|+.||
T Consensus         8 ~~~-~v~~gs~dg~v~a~d~~tG~~~W~~~~~---------------~~~s~p~~~------~g~~~v~~s~dg~l~a~d   65 (369)
T 2hz6_A            8 PET-LLFVSTLDGSLHAVSKRTGSIKWTLKED---------------PVLQVPTHV------EEPAFLPDPNDGSLYTLG   65 (369)
T ss_dssp             CTT-EEEEEETTSEEEEEETTTCCEEEEEECC---------------CSCCCC-----------CCEEECTTTCCEEEC-
T ss_pred             eCC-EEEEEcCCCEEEEEECCCCCEEEEecCC---------------CceecceEc------CCCEEEEeCCCCEEEEEE
Confidence            345 7899999999999999999998887631               223333333      677888888999999999


Q ss_pred             CCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCe
Q 025649          112 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL  191 (250)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~  191 (250)
                      ..+++.........                                       ...+   ..+|....+..+++++.|+.
T Consensus        66 ~~tG~~~w~~~~~~---------------------------------------~~~~---~~sp~~~~~~~v~~g~~dg~  103 (369)
T 2hz6_A           66 SKNNEGLTKLPFTI---------------------------------------PELV---QASPCRSSDGILYMGKKQDI  103 (369)
T ss_dssp             ----CCSEECSCCH---------------------------------------HHHH---TTCSCC-----CCCCEEEEE
T ss_pred             CCCCceeeeeeccC---------------------------------------cccc---ccCceEecCCEEEEEeCCCE
Confidence            98776433221110                                       0000   01111113456777888999


Q ss_pred             EEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          192 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       192 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      |+.||.++++..         -.+..+.    ...++| ++..+++++.|+.|+.||.
T Consensus       104 v~a~D~~tG~~~---------w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A          104 WYVIDLLTGEKQ---------QTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDT  147 (369)
T ss_dssp             EEEECCC------------------------------------EEEEEEEEEEECCCS
T ss_pred             EEEEECCCCcEE---------EEecCCC----cccccc-cCCEEEEEecCCEEEEEEC
Confidence            999999998432         2222221    123445 6667888999999999986

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.85  E-value=5.3e-07  Score=67.54  Aligned_cols=202  Identities=9%  Similarity=-0.091  Sum_probs=118.6

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |..+|.+ ++....+. .+...+.++...+++.  +..++.++.|..+|.. ++.+..+...             ...+.
T Consensus       119 l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~-------------~~~~~  180 (330)
T 3hxj_A          119 LYAINTD-GTEKWRFK-TKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTN-------------DAITS  180 (330)
T ss_dssp             EEEECTT-SCEEEEEE-CSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEEEEEECS-------------SCCCS
T ss_pred             EEEEcCC-CCEEEEEc-CCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecC-------------CCcee
Confidence            4566766 66666666 5555677777777776  6667778999999988 7766665533             22344


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe--eeeeeccCeeeeeec
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM--EILDQSGGKRLHLDY  159 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  159 (250)
                      ++.+.+      ++.+++ ++  +.|..+| .+++........ ...+.++...++|...+..  +.....+. ..+.+.
T Consensus       181 ~~~~d~------~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~  248 (330)
T 3hxj_A          181 AASIGK------DGTIYF-GS--DKVYAIN-PDGTEKWNFYAG-YWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKW  248 (330)
T ss_dssp             CCEECT------TCCEEE-ES--SSEEEEC-TTSCEEEEECCS-SCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEE
T ss_pred             eeEEcC------CCEEEE-Ee--CEEEEEC-CCCcEEEEEccC-CcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeE
Confidence            455544      566444 44  7899999 666655544433 2567788888887666531  11111111 111122


Q ss_pred             cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649          160 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD  239 (250)
Q Consensus       160 ~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  239 (250)
                      .+......+.++.+.   +++ .|..++.+|.|..+|. ++         +.+.........+.++...+ ++. |..++
T Consensus       249 ~~~~~~~~~~~~~~~---~~g-~l~v~t~~ggl~~~d~-~g---------~~~~~~~~~~~~~~~~~~d~-~g~-l~~gt  312 (330)
T 3hxj_A          249 RFKTGKRIESSPVIG---NTD-TIYFGSYDGHLYAINP-DG---------TEKWNFETGSWIIATPVIDE-NGT-IYFGT  312 (330)
T ss_dssp             EEECSSCCCSCCEEC---TTS-CEEEECTTCEEEEECT-TS---------CEEEEEECSSCCCSCCEECT-TCC-EEEEC
T ss_pred             EeeCCCCccccceEc---CCC-eEEEecCCCCEEEECC-CC---------cEEEEEEcCCccccceEEcC-CCE-EEEEc
Confidence            222222223334444   455 4556777889999996 44         33233333344566666654 564 77788


Q ss_pred             CCceEEEEeC
Q 025649          240 TSKVVKVYSI  249 (250)
Q Consensus       240 ~d~~i~vw~~  249 (250)
                      .+|.+++...
T Consensus       313 ~~G~~~~~~~  322 (330)
T 3hxj_A          313 RNGKFYALFN  322 (330)
T ss_dssp             TTSCEEEEEC
T ss_pred             CCCeEEEEec
Confidence            8999987653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.85  E-value=2.6e-07  Score=73.57  Aligned_cols=194  Identities=10%  Similarity=0.024  Sum_probs=125.8

Q ss_pred             CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEec-C-CCcccCCCCCEEEEEe-------
Q 025649           32 WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI-P-DADMLDKTNKICVVAK-------  102 (250)
Q Consensus        32 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~~~~~l~~~~-------  102 (250)
                      ||++++++...++.|.+-|+.+.++.+.+...            .....+.+++ + |      +++++++++       
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip------------~g~~phg~~~~~~p------~~~~v~~~~~~~~p~~  161 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP------------NAKGIHGLRPQKWP------RSNYVFCNGEDETPLV  161 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECS------------SCCSEEEEEECCSS------BCSEEEEEECSCEESS
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC------------CCCCCcceeeeecC------CCcEEEEecccccccC
Confidence            78866777777889999999999988866543            2245778886 4 7      888888884       


Q ss_pred             -----------CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec---------------------
Q 025649          103 -----------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS---------------------  150 (250)
Q Consensus       103 -----------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  150 (250)
                                 .++.+.+.|..+.+...++...  .....++++|+|++++........                     
T Consensus       162 ~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~  239 (595)
T 1fwx_A          162 NDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA  239 (595)
T ss_dssp             CSSSSTTCGGGEEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred             CCCcccccccccCceEEEEECCCCeEEEEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecc
Confidence                       3568999999998877776654  245778899999988843321100                     


Q ss_pred             -------cCee--eeeeccccCc-------------cccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCccee--c
Q 025649          151 -------GGKR--LHLDYSVGGH-------------TAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQ--T  205 (250)
Q Consensus       151 -------~~~~--~~~~~~~~~h-------------~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~--~  205 (250)
                             ....  ...+..+...             .....++.++   |||++++.++ .+.+|.++|+.+.+...  .
T Consensus       240 ~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~s---PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~  316 (595)
T 1fwx_A          240 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMA---PDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN  316 (595)
T ss_dssp             HHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEEC---TTSSEEEEECTTSSBEEEEEGGGHHHHHHSC
T ss_pred             ceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEc---CCCCEEEEeCCCCCeEEEEECcccccccccc
Confidence                   0000  0001111111             1123567888   8999877665 58899999999752110  0


Q ss_pred             ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          206 SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ......+.....-......++|+| +|...++.-.|+.|.+||+
T Consensus       317 l~~~~~v~~~v~vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          317 ADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             CCGGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEH
T ss_pred             cCcccceEEEcCCCCCcceEEECC-CCeEEEEEecCCcEEEEEh
Confidence            000012223334456788999998 7854556778999999986

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.80  E-value=7.3e-07  Score=69.04  Aligned_cols=186  Identities=12%  Similarity=-0.031  Sum_probs=110.7

Q ss_pred             CCCCeEEEEecCC----CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe----
Q 025649           31 PWKPWEVISGGLD----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK----  102 (250)
Q Consensus        31 ~~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~----  102 (250)
                      ++++..+++...+    +.|.+.|+.+++.+..+..+             ..+  .++++|      ++++++++.    
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-------------~~P--gia~Sp------Dgk~lyVan~~~~  140 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-------------FLP--HPVAAE------DGSFFAQASTVFE  140 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-------------SSC--EEEECT------TSSCEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-------------CCC--ceEECC------CCCEEEEEecccc
Confidence            4566445555544    79999999999999999876             233  799998      999888876    


Q ss_pred             ------CCCeEEEEeCCCceeEeeccCC------CCCCccceeecccceeEEEeeee-----eeccCeeeeeeccccCcc
Q 025649          103 ------GDGVVDVINIESELNISRSKST------TKPLKGSQSTSKVNIRDAEMEIL-----DQSGGKRLHLDYSVGGHT  165 (250)
Q Consensus       103 ------~d~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~h~  165 (250)
                            .++.|.++|..+++....+...      .......+.++|||++++.....     ...+....+.+.++....
T Consensus       141 ~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g  220 (426)
T 3c75_H          141 RIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD  220 (426)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred             ccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC
Confidence                  4679999999998887766543      12356789999999998843211     111222333333333211


Q ss_pred             ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCce-eEEEecCCCCCeEEEeeCCceE
Q 025649          166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV-NWLCTTPTESENLVVCDTSKVV  244 (250)
Q Consensus       166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~d~~i  244 (250)
                          +....|  ...+.+++.+.||.+.+.+..+++.....   .  ..+.....++ ..+.+.+ ++..++..+..+.+
T Consensus       221 ----~~~~~p--~g~~~~v~~~~dG~~~~V~~~~~~v~~~~---~--~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V  288 (426)
T 3c75_H          221 ----CYHIFP--ASPTVFYMNCRDGSLARVDFADGETKVTN---T--EVFHTEDELLINHPAFSL-RSGRLVWPTYTGKI  288 (426)
T ss_dssp             ----EEEEEE--EETTEEEEEETTSSEEEEECCTTCCEEEE---C--CCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEE
T ss_pred             ----ceeecc--CCCcEEEEEcCCCCEEEEECCCCcEEEEe---e--eeeccCCCceeeEeeecC-CCCEEEEEeCCCcE
Confidence                122331  12356666777888888888554211000   0  0011111111 1234565 55555555667778


Q ss_pred             EEEeC
Q 025649          245 KVYSI  249 (250)
Q Consensus       245 ~vw~~  249 (250)
                      .+.|+
T Consensus       289 ~ViD~  293 (426)
T 3c75_H          289 FQADL  293 (426)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            77774

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.80  E-value=1.2e-05  Score=57.78  Aligned_cols=203  Identities=10%  Similarity=0.065  Sum_probs=126.0

Q ss_pred             eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649           15 SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT   94 (250)
Q Consensus        15 ~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (250)
                      .+. +-.+.+..++++|++..++++...++.|...|+. ++.++.+.++            .......+++.+      +
T Consensus        21 ~l~-g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~------------g~~D~EGIa~~~------~   80 (255)
T 3qqz_A           21 EIA-GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD------------FVKDLETIEYIG------D   80 (255)
T ss_dssp             ECT-TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS------------SCSSEEEEEECS------T
T ss_pred             ECC-CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC------------CCCChHHeEEeC------C
Confidence            455 6667899999999877466667778999999997 8888877654            124567788876      7


Q ss_pred             CCEEEEEeCCCeEEEEeCCCcee---Eeecc-----CCCCCCccceeecccceeEEEeeeeee------cc---Ceeeee
Q 025649           95 NKICVVAKGDGVVDVINIESELN---ISRSK-----STTKPLKGSQSTSKVNIRDAEMEILDQ------SG---GKRLHL  157 (250)
Q Consensus        95 ~~~l~~~~~d~~i~~~d~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~  157 (250)
                      +.++++.-.++.+.++++.....   .....     .........++++|+++.+..+.-.+.      ..   ......
T Consensus        81 g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i  160 (255)
T 3qqz_A           81 NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHI  160 (255)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEE
T ss_pred             CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceee
Confidence            77767766778899998765332   12211     123455688999999866653222111      10   001111


Q ss_pred             ecc--c--cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc------CCceeEEEe
Q 025649          158 DYS--V--GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL------NKKVNWLCT  227 (250)
Q Consensus       158 ~~~--~--~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~  227 (250)
                      ...  +  ..+...+.+++++|  ..+++++.....+.+..+|.... ..      ..+....+.      -...-.|++
T Consensus       161 ~~~~~~~~~~~~~d~S~l~~dp--~tg~lliLS~~s~~L~~~d~~g~-~~------~~~~L~~g~~~l~~~~~qpEGia~  231 (255)
T 3qqz_A          161 SKDKALQRQFTLDDVSGAEFNQ--QKNTLLVLSHESRALQEVTLVGE-VI------GEMSLTKGSRGLSHNIKQAEGVAM  231 (255)
T ss_dssp             EECHHHHHTCCSSCCCEEEEET--TTTEEEEEETTTTEEEEECTTCC-EE------EEEECSTTGGGCSSCCCSEEEEEE
T ss_pred             ecchhhccccccCCceeEEEcC--CCCeEEEEECCCCeEEEEcCCCC-EE------EEEEcCCccCCcccccCCCCeeEE
Confidence            100  0  11234578999996  56778888888899999998764 11      111111111      124678899


Q ss_pred             cCCCCCeEEEeeCCceEEEEe
Q 025649          228 TPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       228 ~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      .+ +|. |+..+.-+.++.+.
T Consensus       232 d~-~G~-lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          232 DA-SGN-IYIVSEPNRFYRFT  250 (255)
T ss_dssp             CT-TCC-EEEEETTTEEEEEE
T ss_pred             CC-CCC-EEEEcCCceEEEEE
Confidence            87 787 44446566665553

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.76  E-value=1.2e-06  Score=65.66  Aligned_cols=173  Identities=10%  Similarity=-0.022  Sum_probs=95.0

Q ss_pred             EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  115 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  115 (250)
                      .|..++.++.|..+|.. ++.......+             ...+.++...+      ++. +..++.++.|..+|.. +
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~-------------~~~~~~~~~~~------~g~-l~vgt~~~~l~~~d~~-g  166 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKTK-------------KAIYATPIVSE------DGT-IYVGSNDNYLYAINPD-G  166 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEECS-------------SCCCSCCEECT------TSC-EEEECTTSEEEEECTT-S
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcCC-------------CceeeeeEEcC------CCE-EEEEcCCCEEEEECCC-C
Confidence            46666667777777776 6554444322             11233333333      454 6667788999999998 6


Q ss_pred             eeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEE
Q 025649          116 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW  195 (250)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iw  195 (250)
                      +........ ...+..+...+++...+..+.....+ ...+.+..+......+.++...   ++|.+ ..++.++.|..+
T Consensus       167 ~~~~~~~~~-~~~~~~~~~d~~g~l~v~t~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~---~~g~l-~v~t~~~gl~~~  240 (330)
T 3hxj_A          167 TEKWRFKTN-DAITSAASIGKDGTIYFGSDKVYAIN-PDGTEKWNFYAGYWTVTRPAIS---EDGTI-YVTSLDGHLYAI  240 (330)
T ss_dssp             CEEEEEECS-SCCCSCCEECTTCCEEEESSSEEEEC-TTSCEEEEECCSSCCCSCCEEC---TTSCE-EEEETTTEEEEE
T ss_pred             CEeEEEecC-CCceeeeEEcCCCEEEEEeCEEEEEC-CCCcEEEEEccCCcceeceEEC---CCCeE-EEEcCCCeEEEE
Confidence            665544433 34566777777777665321111111 1112222333333556677777   66654 445667888888


Q ss_pred             ecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          196 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       196 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      |...          ..+.........+..+...+ ++ .|..++.+|.|..+|
T Consensus       241 ~~~g----------~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          241 NPDG----------TEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAIN  281 (330)
T ss_dssp             CTTS----------CEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEEC
T ss_pred             CCCC----------CEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEEC
Confidence            7533          22222222223333444432 44 467777787777776

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.72  E-value=1.7e-06  Score=71.45  Aligned_cols=113  Identities=9%  Similarity=-0.011  Sum_probs=67.8

Q ss_pred             cEEEEcccceeeeeeccCC-C----CCeeeEEEcCCCCeEEEEecC------CCeEEEEEccCCCCccceecCCCCCCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGH-S----SICSSVQFIPWKPWEVISGGL------DSKLVMWDFSKGRPNKIVNFGLPENNGN   70 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h-~----~~v~~l~~~~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~   70 (250)
                      |..+|.++|+.+.++. .+ .    ..+.+--...++  .++.++.      +|.|+.+|..+|+.+..+....+.....
T Consensus       140 l~alD~~tG~~~W~~~-~~~~~~~~~~~~~~p~v~~~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~  216 (677)
T 1kb0_A          140 LIALDAATGKEVWHQN-TFEGQKGSLTITGAPRVFKG--KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKP  216 (677)
T ss_dssp             EEEEETTTCCEEEEEE-TTTTCCSSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC
T ss_pred             EEEEECCCCCEEeeec-CCcCcCcCcccccCcEEECC--EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccc
Confidence            5678999999998887 44 1    122211111133  4555443      7999999999999988887542211000


Q ss_pred             C---------------Ccc----cCCCceeEEecCCCcccCCCCCEEEEEeCCC-------------------eEEEEeC
Q 025649           71 A---------------GQC----YNPAFVHAIAIPDADMLDKTNKICVVAKGDG-------------------VVDVINI  112 (250)
Q Consensus        71 ~---------------~~~----~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~-------------------~i~~~d~  112 (250)
                      .               ...    ........+++.|      ++.+++.+..++                   .|..+|.
T Consensus       217 ~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~------~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~  290 (677)
T 1kb0_A          217 FEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA------ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP  290 (677)
T ss_dssp             CSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET------TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred             ccccccccccccccccCceeEeCCCcccccceeEcC------CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEEC
Confidence            0               000    0011112455555      778888887664                   5999999


Q ss_pred             CCceeEeeccC
Q 025649          113 ESELNISRSKS  123 (250)
Q Consensus       113 ~~~~~~~~~~~  123 (250)
                      ++++.......
T Consensus       291 ~TG~~~W~~~~  301 (677)
T 1kb0_A          291 DTGKYKWHYQE  301 (677)
T ss_dssp             TTCCEEEEEES
T ss_pred             CCCCEEEEEec
Confidence            99998876554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.71  E-value=2.4e-06  Score=65.37  Aligned_cols=210  Identities=8%  Similarity=-0.000  Sum_probs=111.7

Q ss_pred             cEEEEcccceeeeeeccCCCCCe-----eeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSIC-----SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v-----~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      |..+|.++|+.+..+. ......     ......  +. .++.++.++.|..+|..+++.+.......+....      .
T Consensus       155 l~~~d~~tG~~~W~~~-~~~~~~~~~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~------~  224 (376)
T 3q7m_A          155 LQALNEADGAVKWTVN-LDMPSLSLRGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGST------E  224 (376)
T ss_dssp             EEEEETTTCCEEEEEE-CCC-----CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC------------
T ss_pred             EEEEECCCCcEEEEEe-CCCCceeecCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCc------c
Confidence            5678888888887776 322111     122222  33 6788888999999999999988777643110000      0


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe-----eeeeecc
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM-----EILDQSG  151 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  151 (250)
                      ...+..+...|.    ..+..+..++.++.+..+|.++++........   ....+... ++..++..     ...+...
T Consensus       225 ~~~~~~~~~~p~----~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~---~~~~~~~~-~~~l~~~~~~g~l~~~d~~t  296 (376)
T 3q7m_A          225 IDRLSDVDTTPV----VVNGVVFALAYNGNLTALDLRSGQIMWKRELG---SVNDFIVD-GNRIYLVDQNDRVMALTIDG  296 (376)
T ss_dssp             -----CCCCCCE----EETTEEEEECTTSCEEEEETTTCCEEEEECCC---CEEEEEEE-TTEEEEEETTCCEEEEETTT
T ss_pred             cccccccCCCcE----EECCEEEEEecCcEEEEEECCCCcEEeeccCC---CCCCceEE-CCEEEEEcCCCeEEEEECCC
Confidence            000001111221    13567777888999999999998877654432   12222222 22222211     1122111


Q ss_pred             Ceeeeeecccc-CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeE-EEecC
Q 025649          152 GKRLHLDYSVG-GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW-LCTTP  229 (250)
Q Consensus       152 ~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~  229 (250)
                      .   +.+.... .....+......     +..++.++.+|.|..+|.++++         .+.........+.. .... 
T Consensus       297 G---~~~w~~~~~~~~~~~~~~~~-----~~~l~v~~~~g~l~~~d~~tG~---------~~~~~~~~~~~~~~~~~~~-  358 (376)
T 3q7m_A          297 G---VTLWTQSDLLHRLLTSPVLY-----NGNLVVGDSEGYLHWINVEDGR---------FVAQQKVDSSGFQTEPVAA-  358 (376)
T ss_dssp             C---CEEEEECTTTTSCCCCCEEE-----TTEEEEECTTSEEEEEETTTCC---------EEEEEECCTTCBCSCCEEE-
T ss_pred             C---cEEEeecccCCCcccCCEEE-----CCEEEEEeCCCeEEEEECCCCc---------EEEEEecCCCcceeCCEEE-
Confidence            1   2222222 111112222222     3577788889999999999983         33333332233322 2221 


Q ss_pred             CCCCeEEEeeCCceEEEEeC
Q 025649          230 TESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       230 ~~~~~l~s~~~d~~i~vw~~  249 (250)
                       + ..|+.++.+|.|..|+.
T Consensus       359 -~-~~l~v~~~~G~l~~~~~  376 (376)
T 3q7m_A          359 -D-GKLLIQAKDGTVYSITR  376 (376)
T ss_dssp             -T-TEEEEEBTTSCEEEEEC
T ss_pred             -C-CEEEEEeCCCEEEEEeC
Confidence             3 36888899999999873

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.70  E-value=1e-06  Score=63.69  Aligned_cols=170  Identities=8%  Similarity=-0.062  Sum_probs=108.1

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|+++|+.+++.+..+..+.......+++.  +..+.++.-.++.+.++|..+.+.+.++..+            .+.  
T Consensus        45 ~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g------------~~~--  108 (266)
T 2iwa_A           45 SVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ------------MKD--  108 (266)
T ss_dssp             EEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECC------------SSS--
T ss_pred             EEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECC------------CCC--
Confidence            378899999999988762222223355555  4436677778899999999999988888633            011  


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC----CCccceeecccceeEEE------eeeeeec
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK----PLKGSQSTSKVNIRDAE------MEILDQS  150 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~~  150 (250)
                       ...+++      +++.++++..++.|.++|..+.+....+.....    .....+.+. +|..++.      +...|..
T Consensus       109 -g~glt~------Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~  180 (266)
T 2iwa_A          109 -GWGLAT------DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAK  180 (266)
T ss_dssp             -CCEEEE------CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETT
T ss_pred             -eEEEEE------CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECC
Confidence             122444      677777777889999999999877766554321    234566777 6654442      1122222


Q ss_pred             cCeeeeeeccccC-------------ccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCC
Q 025649          151 GGKRLHLDYSVGG-------------HTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRF  200 (250)
Q Consensus       151 ~~~~~~~~~~~~~-------------h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~  200 (250)
                         ..+.+..+..             .....+.++|+   |+++ +++++...+.+...++...
T Consensus       181 ---tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~---~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          181 ---DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD---QENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             ---TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE---TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             ---CCcEEEEEECCCcccccccccccccCceEEEEEc---CCCCEEEEECCCCCeEEEEEEecc
Confidence               2222222221             11356899999   6764 6667777889999988764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.69  E-value=2.9e-05  Score=56.41  Aligned_cols=191  Identities=6%  Similarity=-0.083  Sum_probs=108.0

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE-EE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VV  100 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l-~~  100 (250)
                      ..+..+++++++..++++-..++.|..+++........+..+             ......+++.|      ++..| ++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-------------~~~p~~ia~d~------~~~~lyv~   96 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-------------LGSPEGIALDH------LGRTIFWT   96 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT-------------CCCEEEEEEET------TTTEEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC-------------CCCccEEEEEe------cCCeEEEE
Confidence            456799999976646677777899999999755432222211             23567888887      55544 45


Q ss_pred             EeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeee--eec------cCeeeeeeccccCccccEEEEE
Q 025649          101 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL--DQS------GGKRLHLDYSVGGHTAAASCVA  172 (250)
Q Consensus       101 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~h~~~v~~~~  172 (250)
                      -...+.|.++++........... .......++++|++..+......  ...      +....+.+.  .........++
T Consensus        97 d~~~~~I~~~~~~g~~~~~~~~~-~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~--~~~~~~P~gia  173 (267)
T 1npe_A           97 DSQLDRIEVAKMDGTQRRVLFDT-GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA--QDNLGLPNGLT  173 (267)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECS-SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE--CTTCSCEEEEE
T ss_pred             ECCCCEEEEEEcCCCCEEEEEEC-CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEE--ECCCCCCcEEE
Confidence            45678999999875432222211 12456789999965444312111  000      111111111  11224568899


Q ss_pred             eecCCCCCcE-EEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          173 FSMFGERGKY-LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       173 ~~p~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ++   +++.. +++-...+.|.++|.....         ..... ........++..  ++.++++...++.|..+|.
T Consensus       174 ~d---~~~~~lyv~d~~~~~I~~~~~~g~~---------~~~~~-~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          174 FD---AFSSQLCWVDAGTHRAECLNPAQPG---------RRKVL-EGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             EE---TTTTEEEEEETTTTEEEEEETTEEE---------EEEEE-ECCCSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred             Ec---CCCCEEEEEECCCCEEEEEecCCCc---------eEEEe-cCCCCceEEEEe--CCEEEEEECCCCeEEEEeC
Confidence            99   76554 4555567899999997642         11111 122334566553  3434444445678888875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.68  E-value=2.8e-06  Score=64.66  Aligned_cols=189  Identities=7%  Similarity=-0.073  Sum_probs=103.5

Q ss_pred             CcEEEEcccceeeeeeccCC-------CCCeeeEEEcCCCCeEEEEec-C-CCeEEE--EEccCCCCccceecCCCCC--
Q 025649            1 MWQIIDIRQHCLYKSLRAGH-------SSICSSVQFIPWKPWEVISGG-L-DSKLVM--WDFSKGRPNKIVNFGLPEN--   67 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h-------~~~v~~l~~~~~~~~~l~s~s-~-dg~v~i--wd~~~~~~~~~~~~~~~~~--   67 (250)
                      +|.+||+.+++.+.++. .+       ......++++|||+ +++.+. . +..|.+  +|+.+   +..+..+....  
T Consensus        97 ~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~  171 (368)
T 1mda_H           97 YVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIH  171 (368)
T ss_dssp             EEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSS-CEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCE
T ss_pred             EEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCC-EEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEc
Confidence            37899999999999987 33       13467999999999 455554 2 467888  99866   33332210000  


Q ss_pred             -CC-CCCccc-CCCceeEEec----------------------CCCcccCCCCCEEEEEeCCCeEEEEeCCCce--eEee
Q 025649           68 -NG-NAGQCY-NPAFVHAIAI----------------------PDADMLDKTNKICVVAKGDGVVDVINIESEL--NISR  120 (250)
Q Consensus        68 -~~-~~~~~~-~~~~v~~~~~----------------------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~  120 (250)
                       .. ...... ....+..+..                      .|..  .+++..++..+. +.+.+.|+.++.  ....
T Consensus       172 p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~--~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~  248 (368)
T 1mda_H          172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ--ANYPGMLVWAVA-SSILQGDIPAAGATMKAA  248 (368)
T ss_dssp             EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE--ETTTTEEEECBS-SCCEEEECCSSCCEEECC
T ss_pred             cCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccc--cccCCEEEEEcC-CEEEEEECCCCcceEEEE
Confidence             00 000000 0000000000                      0100  113444444455 888899986532  2221


Q ss_pred             ccCCC---------CCCccceeecccceeEEEeee------------eeeccCeeeeeeccccCccccEEEEEeecCCCC
Q 025649          121 SKSTT---------KPLKGSQSTSKVNIRDAEMEI------------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER  179 (250)
Q Consensus       121 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  179 (250)
                      +....         ......+.++|+++.++....            ....+....+.+..+.... ....++|+   |+
T Consensus       249 ~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s---~D  324 (368)
T 1mda_H          249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAA---QD  324 (368)
T ss_dssp             CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEEC---CS
T ss_pred             EEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEEC---CC
Confidence            21110         012223789999887773211            0122234444555555433 57899999   88


Q ss_pred             Cc-EEEEee-CCCeEEEEecCCCc
Q 025649          180 GK-YLISGG-NDKLVKVWDCSRFQ  201 (250)
Q Consensus       180 ~~-~l~s~~-~d~~i~iwd~~~~~  201 (250)
                      |+ ++++.. .++.|.++|+.+++
T Consensus       325 g~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          325 GASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             SSCEEEEEETTTTEEEEEESSSCE
T ss_pred             CCEEEEEccCCCCeEEEEECCCCc
Confidence            87 566666 59999999999983

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.68  E-value=2e-05  Score=60.22  Aligned_cols=204  Identities=12%  Similarity=0.022  Sum_probs=110.4

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |..+|.++|+.+.... ............ ++  .++.++.++.|..+|..+|+.+.......              .+.
T Consensus       115 l~a~d~~tG~~~W~~~-~~~~~~~~p~~~-~~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~--------------~~~  176 (376)
T 3q7m_A          115 VYALNTSDGTVAWQTK-VAGEALSRPVVS-DG--LVLIHTSNGQLQALNEADGAVKWTVNLDM--------------PSL  176 (376)
T ss_dssp             EEEEETTTCCEEEEEE-CSSCCCSCCEEE-TT--EEEEECTTSEEEEEETTTCCEEEEEECCC-----------------
T ss_pred             EEEEECCCCCEEEEEe-CCCceEcCCEEE-CC--EEEEEcCCCeEEEEECCCCcEEEEEeCCC--------------Cce
Confidence            5678888898887776 333222222222 33  67888889999999999999888776431              111


Q ss_pred             EE--ecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCC---------ccceeecccceeEEEe-----e
Q 025649           82 AI--AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL---------KGSQSTSKVNIRDAEM-----E  145 (250)
Q Consensus        82 ~~--~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-----~  145 (250)
                      ..  ...|.    ..+..++++..++.+..+|..+++............         +.......++..++..     .
T Consensus       177 ~~~~~~~~~----~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~  252 (376)
T 3q7m_A          177 SLRGESAPT----TAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLT  252 (376)
T ss_dssp             --CCCCCCE----EETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEE
T ss_pred             eecCCCCcE----EECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEE
Confidence            00  01111    034567788889999999999988776554321100         1011111123322211     1


Q ss_pred             eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee-ccCCceeE
Q 025649          146 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI-NLNKKVNW  224 (250)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~  224 (250)
                      ..+..   ..+.+....  ......+..     ++..+..++.++.|..+|..+++.         +-... ........
T Consensus       253 ~~d~~---tG~~~w~~~--~~~~~~~~~-----~~~~l~~~~~~g~l~~~d~~tG~~---------~w~~~~~~~~~~~~  313 (376)
T 3q7m_A          253 ALDLR---SGQIMWKRE--LGSVNDFIV-----DGNRIYLVDQNDRVMALTIDGGVT---------LWTQSDLLHRLLTS  313 (376)
T ss_dssp             EEETT---TCCEEEEEC--CCCEEEEEE-----ETTEEEEEETTCCEEEEETTTCCE---------EEEECTTTTSCCCC
T ss_pred             EEECC---CCcEEeecc--CCCCCCceE-----ECCEEEEEcCCCeEEEEECCCCcE---------EEeecccCCCcccC
Confidence            11211   112222221  122334443     345677777899999999999843         22222 11112222


Q ss_pred             EEecCCCCCeEEEeeCCceEEEEeC
Q 025649          225 LCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       225 ~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ....   +..|+.++.+|.+.++|.
T Consensus       314 ~~~~---~~~l~v~~~~g~l~~~d~  335 (376)
T 3q7m_A          314 PVLY---NGNLVVGDSEGYLHWINV  335 (376)
T ss_dssp             CEEE---TTEEEEECTTSEEEEEET
T ss_pred             CEEE---CCEEEEEeCCCeEEEEEC
Confidence            2232   346788888888888875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.65  E-value=3.2e-06  Score=69.93  Aligned_cols=114  Identities=11%  Similarity=0.083  Sum_probs=67.3

Q ss_pred             cEEEEcccceeeeeeccC-CCCCeeeEEEcC---CCCeEEEEec------CCCeEEEEEccCCCCccceecCCCCCCCC-
Q 025649            2 WQIIDIRQHCLYKSLRAG-HSSICSSVQFIP---WKPWEVISGG------LDSKLVMWDFSKGRPNKIVNFGLPENNGN-   70 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~-h~~~v~~l~~~~---~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-   70 (250)
                      |..+|.++|+.+..+... +......+..+|   ++.  ++.++      .+|.|..||.++|+.+..+.......... 
T Consensus       133 l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~  210 (689)
T 1yiq_A          133 LEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP  210 (689)
T ss_dssp             EEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred             EEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence            567899999998887722 221112222223   443  44443      37899999999999988776321000000 


Q ss_pred             CC--c-----c----------cCCCceeEEecCCCcccCCCCCEEEEEeCCCe-------------------EEEEeCCC
Q 025649           71 AG--Q-----C----------YNPAFVHAIAIPDADMLDKTNKICVVAKGDGV-------------------VDVINIES  114 (250)
Q Consensus        71 ~~--~-----~----------~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~-------------------i~~~d~~~  114 (250)
                      ..  .     .          ........+++.|      +..+++.+..++.                   |..+|.++
T Consensus       211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~------~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T  284 (689)
T 1yiq_A          211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP------ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT  284 (689)
T ss_dssp             CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET------TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT
T ss_pred             ccccccccccccCCceeeecCCCCccccceeEcC------CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC
Confidence            00  0     0          0001112355555      7788888887764                   99999999


Q ss_pred             ceeEeeccC
Q 025649          115 ELNISRSKS  123 (250)
Q Consensus       115 ~~~~~~~~~  123 (250)
                      ++.......
T Consensus       285 G~~~W~~~~  293 (689)
T 1yiq_A          285 GEYVWHYQT  293 (689)
T ss_dssp             CCEEEEEES
T ss_pred             CceeEeeec
Confidence            998876654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.60  E-value=5.9e-06  Score=58.61  Aligned_cols=98  Identities=8%  Similarity=0.137  Sum_probs=69.6

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |+.+|+++++.+..+. -. .........+.+..+.+..-.++.+.++|..+.+.+.++..+              ..-.
T Consensus        45 v~~vD~~tgkv~~~~~-l~-~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~--------------~~Gw  108 (243)
T 3mbr_X           45 VRKVDLETGRILQRAE-VP-PPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP--------------GEGW  108 (243)
T ss_dssp             EEEEETTTCCEEEEEE-CC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECS--------------SCCC
T ss_pred             EEEEECCCCCEEEEEe-CC-CCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC--------------CCce
Confidence            7889999999998887 32 233333333334436666778899999999999999999854              1223


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  123 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  123 (250)
                      .++  +      +++.|+.+..++.|.++|..+.+....+..
T Consensus       109 glt--~------dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X          109 ALT--S------DDSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             EEE--E------CSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             EEe--e------CCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence            443  3      566677777789999999999877666544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.58  E-value=5.9e-06  Score=59.14  Aligned_cols=117  Identities=13%  Similarity=0.077  Sum_probs=78.4

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|+.+|+++++.+..+. -. .........+++..+.+..-.++.+.++|..+.+.+.++..+              ..-
T Consensus        66 ~v~~vD~~Tgkv~~~~~-l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~--------------~eG  129 (262)
T 3nol_A           66 SIRKVDIESGKTLQQIE-LG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD--------------GEG  129 (262)
T ss_dssp             EEEEECTTTCCEEEEEE-CC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS--------------SCC
T ss_pred             eEEEEECCCCcEEEEEe-cC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC--------------CCc
Confidence            37889999999998887 32 334343333345435666667899999999999999999854              111


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC----CCccceeecccceeEE
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK----PLKGSQSTSKVNIRDA  142 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  142 (250)
                      ..++  +      +++.|+.+..++.|.++|..+.+....+.....    ..+..+.+. +|+..+
T Consensus       130 ~glt--~------dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya  186 (262)
T 3nol_A          130 WGLT--H------NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA  186 (262)
T ss_dssp             CCEE--E------CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             eEEe--c------CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence            2333  3      677777777788999999999887766554311    223346665 665444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.56  E-value=2.5e-05  Score=65.38  Aligned_cols=187  Identities=7%  Similarity=-0.064  Sum_probs=100.9

Q ss_pred             CeeeEEEc-CCCCeEEE-EecCC----CeEEEEEccCC-CCccc-eecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649           23 ICSSVQFI-PWKPWEVI-SGGLD----SKLVMWDFSKG-RPNKI-VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT   94 (250)
Q Consensus        23 ~v~~l~~~-~~~~~~l~-s~s~d----g~v~iwd~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (250)
                      .+...+|| |||+ +|+ +.+.+    .+|+++|+.++ +.+.. +.                ....++.|+|      +
T Consensus       175 ~~~~~~~S~PDG~-~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~----------------~~~~~~~Wsp------D  231 (751)
T 2xe4_A          175 DVMEVKPAPPEHD-LVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS----------------GTNGEIVWGP------D  231 (751)
T ss_dssp             EEEEEEECTTTTC-EEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE----------------EECSCCEECS------S
T ss_pred             EEeeeEecCCCCC-EEEEEEeCCCCceEEEEEEECCCCCEeCCcccc----------------CceeeEEEec------C
Confidence            67889999 9999 555 33323    35999999988 53211 11                1234678888      8


Q ss_pred             CCEEEEEeCC-----CeEEEEeCCCceeE--eeccCCCCCCccceeecccceeEEEeeeeeecc-------Ceee--ee-
Q 025649           95 NKICVVAKGD-----GVVDVINIESELNI--SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG-------GKRL--HL-  157 (250)
Q Consensus        95 ~~~l~~~~~d-----~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~-  157 (250)
                      ++.|+....|     ..|.++++.++...  .............+.++|||++++... .....       ....  +. 
T Consensus       232 g~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~-~~~~~~~l~~~d~~~~~~~~~  310 (751)
T 2xe4_A          232 HTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS-QSPETAEVHLLDLRKGNAHNT  310 (751)
T ss_dssp             TTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE-ECSSCEEEEEEESSSCTTCCC
T ss_pred             CCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe-cCCCCceEEEEECCCCCCCce
Confidence            8887777654     36888888875421  222222223456788999999988432 11110       0000  11 


Q ss_pred             -eccccCccccEEEEEeecCCCCCcEEEEeeCC----CeEEEEecCCCcceecccccceeee-eeccCC--ceeEEEecC
Q 025649          158 -DYSVGGHTAAASCVAFSMFGERGKYLISGGND----KLVKVWDCSRFQGVQTSINNDLLIK-NINLNK--KVNWLCTTP  229 (250)
Q Consensus       158 -~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~--~v~~~~~~~  229 (250)
                       ............++.|+   .++.+++....+    ..|..+|+.+..        .. .. +..+..  .+..+.+. 
T Consensus       311 ~~~l~~~~~~~~~s~~~~---~g~~l~~~t~~~~a~~~~L~~~d~~~~~--------~~-~~~li~~~~~~~l~~~~~~-  377 (751)
T 2xe4_A          311 LEIVRPREKGVRYDVQMH---GTSHLVILTNEGGAVNHKLLIAPRGQPS--------DW-SHVLVDHSEDVFMESIAVR-  377 (751)
T ss_dssp             EEESSCCCTTCCEEEEEE---TTTEEEEEECTTTCTTCEEEEEETTSTT--------CC-CCEEECCCSSEEEEEEEEC-
T ss_pred             eEEeecCCCCceEEEeee---eCCEEEEEeCCCCCCCcEEEEEcCCCcc--------cc-eeeEECCCCCcEEEEEEEE-
Confidence             11112233444555555   444455554443    367777776421        11 11 222332  34445543 


Q ss_pred             CCCCeEEEeeCCceEEEE
Q 025649          230 TESENLVVCDTSKVVKVY  247 (250)
Q Consensus       230 ~~~~~l~s~~~d~~i~vw  247 (250)
                       .+.++++...++..+||
T Consensus       378 -~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          378 -SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             -SSEEEEEEEETTEEEEE
T ss_pred             -CCEEEEEEEeCCEEEEE
Confidence             34456667777765554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.54  E-value=0.00014  Score=55.95  Aligned_cols=213  Identities=6%  Similarity=-0.088  Sum_probs=114.1

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |+..++...+....+.  .......++|++.+..++++-...+.|..+++........+..+             .....
T Consensus        98 I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-------------~~~p~  162 (386)
T 3v65_B           98 IRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-------------LESPG  162 (386)
T ss_dssp             EEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS-------------CSCCC
T ss_pred             ceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC-------------CCCcc
Confidence            4455555444433333  33457799999866646667677889999998755432222211             12335


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee-eccC---eeeee
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-QSGG---KRLHL  157 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~  157 (250)
                      .+++.+     ..+++.++-...+.|.+.++.......... ........++++|.+..+....... ....   .....
T Consensus       163 glavd~-----~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~  236 (386)
T 3v65_B          163 GLAVDW-----VHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG  236 (386)
T ss_dssp             CEEEET-----TTTEEEEEETTTTEEEECBTTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             EEEEEe-----CCCeEEEEcCCCCeEEEEeCCCCceEEeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence            566665     245555666667889999887644332222 2224567888998665554221111 0000   00000


Q ss_pred             eccc-cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          158 DYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       158 ~~~~-~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      ...+ .........++++|  .++++.++-+..+.|..+|+....         ..............+++.  ++.++.
T Consensus       237 ~~~~~~~~~~~PnGlavd~--~~~~lY~aD~~~~~I~~~d~dG~~---------~~~~~~~~~~~P~giav~--~~~ly~  303 (386)
T 3v65_B          237 RRIIADTHLFWPNGLTIDY--AGRRMYWVDAKHHVIERANLDGSH---------RKAVISQGLPHPFAITVF--EDSLYW  303 (386)
T ss_dssp             CEEEECSSCSCEEEEEEEG--GGTEEEEEETTTTEEEEECTTSCS---------CEEEECSSCSSEEEEEEE--TTEEEE
T ss_pred             cEEEEECCCCCeeeEEEeC--CCCEEEEEECCCCEEEEEeCCCCe---------eEEEEECCCCCceEEEEE--CCEEEE
Confidence            0111 12233468899993  244555555667899999987532         111112223345667663  344555


Q ss_pred             EeeCCceEEEEe
Q 025649          237 VCDTSKVVKVYS  248 (250)
Q Consensus       237 s~~~d~~i~vw~  248 (250)
                      +-...+.|..++
T Consensus       304 td~~~~~V~~~~  315 (386)
T 3v65_B          304 TDWHTKSINSAN  315 (386)
T ss_dssp             EETTTTEEEEEE
T ss_pred             eeCCCCeEEEEE
Confidence            555566776665

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.41  E-value=4e-05  Score=54.95  Aligned_cols=115  Identities=7%  Similarity=-0.042  Sum_probs=77.3

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |+++|+++++.+..+- ....--..+++.  +..+.+..-.++.+.+||..+.+.+.++..+              ..-.
T Consensus        77 v~~iD~~Tgkv~~~~l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~--------------~eGw  139 (268)
T 3nok_A           77 LRQLSLESAQPVWMER-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTRYS--------------GEGW  139 (268)
T ss_dssp             EEECCSSCSSCSEEEE-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEECS--------------SCCC
T ss_pred             EEEEECCCCcEEeEEC-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEeCC--------------Ccee
Confidence            6788999999887763 332222345554  3336666778999999999999999998854              1123


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC----CCccceeecccceeEE
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK----PLKGSQSTSKVNIRDA  142 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  142 (250)
                      .++  +      +++.|+.+..++.|.++|..+.+....+.....    ..+..+.+. +|+.++
T Consensus       140 GLt--~------Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya  195 (268)
T 3nok_A          140 GLC--Y------WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA  195 (268)
T ss_dssp             CEE--E------ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEe--c------CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence            333  3      677888877899999999999887766544321    233445555 665444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.41  E-value=8.5e-05  Score=61.25  Aligned_cols=99  Identities=13%  Similarity=0.034  Sum_probs=62.2

Q ss_pred             cEEEEcccceee--eeeccCCCCCeeeEEEcCCCCeEEEEecC-CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~--~~l~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +.+||+.+++..  ..+...+.....++++..++. +++.|+. +..+.+||..+.+....-...            .+.
T Consensus       221 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~~yd~~t~~W~~~~~~~------------~~R  287 (656)
T 1k3i_A          221 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSDSWIPGPDMQ------------VAR  287 (656)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGTEEEECCCCS------------SCC
T ss_pred             EEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceEEecCcCCceeECCCCC------------ccc
Confidence            567888876643  233212334445678889998 7888874 568999999876432211111            122


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEe-CC-----CeEEEEeCCCceeEe
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAK-GD-----GVVDVINIESELNIS  119 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~-~d-----~~i~~~d~~~~~~~~  119 (250)
                      .-++++..+      ++++++.|+ .+     ..+.+||..+++...
T Consensus       288 ~~~s~~~~~------dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~  328 (656)
T 1k3i_A          288 GYQSSATMS------DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS  328 (656)
T ss_dssp             SSCEEEECT------TSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred             cccceEEec------CCeEEEEeCcccCCcccccceEeCCCCCccee
Confidence            224455555      789999988 44     579999998876543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.39  E-value=0.00013  Score=60.33  Aligned_cols=107  Identities=11%  Similarity=0.029  Sum_probs=68.0

Q ss_pred             cEEEEcccceeeeeeccC--CC----------------------------CCeeeEEEcCCCCeEEEEecCCC-------
Q 025649            2 WQIIDIRQHCLYKSLRAG--HS----------------------------SICSSVQFIPWKPWEVISGGLDS-------   44 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~--h~----------------------------~~v~~l~~~~~~~~~l~s~s~dg-------   44 (250)
                      |..+|.++|+.+.++...  ..                            .....+++.|++. +++.++.++       
T Consensus       180 v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~  258 (668)
T 1kv9_A          180 VSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREV  258 (668)
T ss_dssp             EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHH
T ss_pred             EEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCC
Confidence            677899999988877511  00                            0112478888877 787777766       


Q ss_pred             ------------eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC---EEEEEeCCCeEEE
Q 025649           45 ------------KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK---ICVVAKGDGVVDV  109 (250)
Q Consensus        45 ------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~l~~~~~d~~i~~  109 (250)
                                  .|..+|.++|+.+..++....+.-..   . .........+..      +++   .++.++.+|.+.+
T Consensus       259 ~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~---~-~~~~~~~~d~~~------~G~~~~~v~~~~~~G~l~~  328 (668)
T 1kv9_A          259 RSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF---T-ATQQITLAELNI------DGKPRKVLMQAPKNGFFYV  328 (668)
T ss_dssp             HSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC---C-CCSCEEEEEEEE------TTEEEEEEEECCTTSEEEE
T ss_pred             CCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc---c-CCCCcEEEEecc------CCcEEEEEEEECCCCEEEE
Confidence                        49999999999988887431000000   0 001111111111      444   6889999999999


Q ss_pred             EeCCCceeEe
Q 025649          110 INIESELNIS  119 (250)
Q Consensus       110 ~d~~~~~~~~  119 (250)
                      +|..+++.+.
T Consensus       329 lD~~tG~~l~  338 (668)
T 1kv9_A          329 LDRTNGKLIS  338 (668)
T ss_dssp             EETTTCCEEE
T ss_pred             EECCCCCEec
Confidence            9999998773

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.35  E-value=0.00048  Score=53.73  Aligned_cols=119  Identities=5%  Similarity=-0.056  Sum_probs=69.8

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCC----eEEEEEccCCCCc--cceecCCCCCCCCCCccc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS----KLVMWDFSKGRPN--KIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg----~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~   75 (250)
                      |+.+|+++++......  .......|+|+++++.++++...++    .+...+ ..+...  ..+.              
T Consensus       161 I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~--------------  223 (430)
T 3tc9_A          161 TRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITELT--------------  223 (430)
T ss_dssp             EEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEE--------------
T ss_pred             EEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeec--------------
Confidence            5677777665543333  4456789999999984444443222    233333 333322  1221              


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (250)
                      .....+.+++.|     .++.++++-..++.|..++...+................++++|+|+++.
T Consensus       224 ~~~~p~giavdp-----~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ly  285 (430)
T 3tc9_A          224 KGQNCNGAETHP-----INGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAY  285 (430)
T ss_dssp             ECSSCCCEEECT-----TTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred             cCCCceEEEEeC-----CCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEE
Confidence            112346677776     24566666667889999999876653322222224567899999998554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.28  E-value=0.00059  Score=51.66  Aligned_cols=212  Identities=6%  Similarity=-0.090  Sum_probs=112.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |+..++...+....+.  .......++|++.+..++++-...+.|..+++........+..+             .....
T Consensus        55 I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-------------~~~p~  119 (349)
T 3v64_C           55 IRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-------------LESPG  119 (349)
T ss_dssp             EEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-------------CSCCC
T ss_pred             eEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC-------------CCCcc
Confidence            3444554433333333  23346799999766646667677889999998765433322211             12345


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee-eccCe---eeee
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-QSGGK---RLHL  157 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~  157 (250)
                      .+++.+     ..+++.++-...+.|.+.++.......... ........++++|.+..+..+.... .....   ....
T Consensus       120 glavd~-----~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~  193 (349)
T 3v64_C          120 GLAVDW-----VHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG  193 (349)
T ss_dssp             EEEEET-----TTTEEEEEETTTTEEEEEETTSCSCEEEEC-TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             EEEEec-----CCCeEEEEcCCCCeEEEEcCCCCceEEEEe-CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence            677765     145555666677899999987644332222 2224567889998655544221111 00000   0000


Q ss_pred             eccc-cCccccEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          158 DYSV-GGHTAAASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       158 ~~~~-~~h~~~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                      ...+ ...-.....++++   ++ +++.++-+..+.|..+|+....         ........-.....+++.  ++.++
T Consensus       194 ~~~~~~~~~~~PnGla~d---~~~~~lY~aD~~~~~I~~~~~dG~~---------~~~~~~~~~~~P~giav~--~~~ly  259 (349)
T 3v64_C          194 RRIIADTHLFWPNGLTID---YAGRRMYWVDAKHHVIERANLDGSH---------RKAVISQGLPHPFAITVF--EDSLY  259 (349)
T ss_dssp             CEESCCSSCSCEEEEEEE---TTTTEEEEEETTTTEEEEEETTSCS---------CEEEECSSCSSEEEEEEE--TTEEE
T ss_pred             cEEEEECCCCCcceEEEe---CCCCEEEEEECCCCEEEEEeCCCCc---------eEEEEeCCCCCceEEEEE--CCEEE
Confidence            1111 1223456899999   54 4555555667899999987532         111111223345666663  34444


Q ss_pred             EEeeCCceEEEEe
Q 025649          236 VVCDTSKVVKVYS  248 (250)
Q Consensus       236 ~s~~~d~~i~vw~  248 (250)
                      .+-...+.|..++
T Consensus       260 ~td~~~~~V~~~~  272 (349)
T 3v64_C          260 WTDWHTKSINSAN  272 (349)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EecCCCCeEEEEE
Confidence            4544556666554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.27  E-value=0.00057  Score=51.00  Aligned_cols=197  Identities=8%  Similarity=-0.056  Sum_probs=102.9

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCC-----CC--CCcccCCCceeEEecCCCcccCCC
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENN-----GN--AGQCYNPAFVHAIAIPDADMLDKT   94 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~v~~~~~~~~~~~~~~   94 (250)
                      ....++++.+++. ++.++..++.|..||..+++. ..+........     ..  ...........++++.+      +
T Consensus        19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~------~   90 (322)
T 2fp8_A           19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL------Q   90 (322)
T ss_dssp             SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET------T
T ss_pred             CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcC------C
Confidence            4567899999987 788888899999999875442 22221100000     00  00000012457788774      3


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeEeeccC---CCCCCccceeecc-cceeEEEeeeee----------------ec----
Q 025649           95 NKICVVAKGDGVVDVINIESELNISRSKS---TTKPLKGSQSTSK-VNIRDAEMEILD----------------QS----  150 (250)
Q Consensus        95 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~----  150 (250)
                      +..|.++...+.|..+|..++........   ........+++.+ +|...++.....                ..    
T Consensus        91 ~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           91 NNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             TTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             CCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence            44555555555688899876543221111   1113456789999 887776432100                00    


Q ss_pred             cCeeeeeeccccCccccEEEEEeecCCCCCcEEE-EeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649          151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                      +....+ +..+.........++++   ++|++|. +-+..+.|..|++......    ..+.+.   ...+ ...+++.+
T Consensus       171 d~~~~~-~~~~~~~~~~p~gia~~---~dg~~lyv~d~~~~~I~~~~~~~~~~~----~~~~~~---~~~g-P~gi~~d~  238 (322)
T 2fp8_A          171 DPSTKE-TTLLLKELHVPGGAEVS---ADSSFVLVAEFLSHQIVKYWLEGPKKG----TAEVLV---KIPN-PGNIKRNA  238 (322)
T ss_dssp             ETTTTE-EEEEEEEESCCCEEEEC---TTSSEEEEEEGGGTEEEEEESSSTTTT----CEEEEE---ECSS-EEEEEECT
T ss_pred             eCCCCE-EEEeccCCccCcceEEC---CCCCEEEEEeCCCCeEEEEECCCCcCC----ccceEE---eCCC-CCCeEECC
Confidence            000000 00000111234568888   8887554 4456789999998753110    001111   1223 67788876


Q ss_pred             CCCCeEEEee
Q 025649          230 TESENLVVCD  239 (250)
Q Consensus       230 ~~~~~l~s~~  239 (250)
                       +|.+.++..
T Consensus       239 -~G~l~va~~  247 (322)
T 2fp8_A          239 -DGHFWVSSS  247 (322)
T ss_dssp             -TSCEEEEEE
T ss_pred             -CCCEEEEec
Confidence             777655543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.26  E-value=0.00035  Score=57.72  Aligned_cols=101  Identities=17%  Similarity=0.146  Sum_probs=62.5

Q ss_pred             cEEEEcccceeeeeeccCCCCC----------e-eeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSI----------C-SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN   70 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~----------v-~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~   70 (250)
                      |.-+|.++|+.+.++. .....          + ..+++  .+. .++.++.|+.|..+|..+|+.+..+....      
T Consensus        78 v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~-~v~v~~~dg~l~alD~~tG~~~W~~~~~~------  147 (668)
T 1kv9_A           78 VIAVDAASGKELWRYD-PEVAKVKARTSCCDAVNRGVAL--WGD-KVYVGTLDGRLIALDAKTGKAIWSQQTTD------  147 (668)
T ss_dssp             EEEEETTTCCEEEEEC-CCCCGGGGGGCTTCSCCCCCEE--EBT-EEEEECTTSEEEEEETTTCCEEEEEECSC------
T ss_pred             EEEEECCCChhceEEC-CCCCccccccccccCCccceEE--ECC-EEEEEcCCCEEEEEECCCCCEeeeeccCC------
Confidence            4567888898888776 32211          0 12233  234 68888899999999999999988877431      


Q ss_pred             CCcccCCCceeEEecCCCcccCCCCCEEEEEeC------CCeEEEEeCCCceeEeecc
Q 025649           71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG------DGVVDVINIESELNISRSK  122 (250)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~  122 (250)
                            ......+..+|..    .+..++++..      +|.|..+|.++++.+....
T Consensus       148 ------~~~~~~~~~~P~v----~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          148 ------PAKPYSITGAPRV----VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             ------TTSSCBCCSCCEE----ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             ------CCCcceecCCCEE----ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence                  0001111112211    1334445433      5899999999999887654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.26  E-value=9.3e-05  Score=61.36  Aligned_cols=214  Identities=6%  Similarity=-0.091  Sum_probs=109.6

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC----CCCccceecCCCCCCCCCCcccCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK----GRPNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      |+..++.+.+....+. . ...+..|+|++.+..++++-...+.|+.+++..    ......+..+             .
T Consensus       388 I~~id~~~~~~~~~~~-~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~-------------~  452 (699)
T 1n7d_A          388 VRKMTLDRSEYTSLIP-N-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-------------I  452 (699)
T ss_dssp             -CEECTTSCCEECCSC-C-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC-------------C
T ss_pred             eEEEeCCCCcceeeec-c-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC-------------C
Confidence            4556665555444443 2 345678999987763555555678899998864    1111111101             1


Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee-ecc---Ce
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-QSG---GK  153 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~  153 (250)
                      .....+++.+     ..++++++-...+.|.++++........+.. .......++++|.+..|+.+.... ..+   ..
T Consensus       453 ~~P~glavD~-----~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~-~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~  526 (699)
T 1n7d_A          453 QAPDGLAVDW-----IHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  526 (699)
T ss_dssp             --CCCEECCC-----SSSBCEECCTTTSCEEEEBSSSCCEEEECCC-SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred             CCcceEEEEe-----eCCcEEEEeccCCeEEEEecCCCceEEEEeC-CCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence            2345677765     2455555556678999999886544333222 124567888998765554221100 000   00


Q ss_pred             eeeeeccc-cCccccEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649          154 RLHLDYSV-GGHTAAASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE  231 (250)
Q Consensus       154 ~~~~~~~~-~~h~~~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  231 (250)
                      .......+ ...-.....|+++   ++ ++++++-+..+.|..+|+.....       ..+......-.....|++.. +
T Consensus       527 dG~~~~~l~~~~l~~PnGlavd---~~~~~LY~aD~~~~~I~~~d~dG~~~-------~~~~~~~~~~~~P~glavd~-~  595 (699)
T 1n7d_A          527 NGVDIYSLVTENIQWPNGITLD---LLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFE-D  595 (699)
T ss_dssp             SSCCCCEESCSSCSSCCCEEEC---TTTCCEEEEETTTTEEEEECSSSSCC-------EEECCCSSSCSSCCCCEEET-T
T ss_pred             CCCCeeEEEeCCCCCccEEEEe---ccCCEEEEEecCCCeEEEEccCCCce-------EEEEecCCcCCCceEeEEEC-C
Confidence            00001111 1112345678998   55 55566666678999999875321       11111111112344555543 2


Q ss_pred             CCeEEEeeCCceEEEEe
Q 025649          232 SENLVVCDTSKVVKVYS  248 (250)
Q Consensus       232 ~~~l~s~~~d~~i~vw~  248 (250)
                       .++++....+.|..++
T Consensus       596 -~lywtd~~~~~V~~~d  611 (699)
T 1n7d_A          596 -KVFWTDIINEAIFSAN  611 (699)
T ss_dssp             -EEEEECSTTTCEEEEE
T ss_pred             -EEEEEeCCCCeEEEEE
Confidence             3444555566777665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.25  E-value=0.00061  Score=50.78  Aligned_cols=213  Identities=6%  Similarity=-0.103  Sum_probs=116.3

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC---CCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG---RPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |+..|+.+.+....+.  .......++|++.+..++++-..++.|..+++...   .....+...            ...
T Consensus        12 I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~------------~~~   77 (316)
T 1ijq_A           12 VRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------------DIQ   77 (316)
T ss_dssp             EEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS------------SCS
T ss_pred             EEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC------------CCC
Confidence            6778887766555554  34567899999876646677777899999998751   222222101            112


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee-ec------c
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-QS------G  151 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~  151 (250)
                      ...++++.+     ..+++.++-...+.|.++|+.......... ........++++|.+..+....... ..      +
T Consensus        78 ~p~glavd~-----~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d  151 (316)
T 1ijq_A           78 APDGLAVDW-----IHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  151 (316)
T ss_dssp             CCCEEEEET-----TTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CcCEEEEee-----cCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence            346677764     134555555678899999988644332222 1224567889998655544221110 00      1


Q ss_pred             CeeeeeeccccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCC
Q 025649          152 GKRLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT  230 (250)
Q Consensus       152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  230 (250)
                      ....+.+  ....-.....++++   +++. +.++-+..+.|..+|+.....       ..+......-.....+++.  
T Consensus       152 G~~~~~~--~~~~~~~P~gla~d---~~~~~lY~~D~~~~~I~~~d~dg~~~-------~~~~~~~~~~~~P~giav~--  217 (316)
T 1ijq_A          152 GVDIYSL--VTENIQWPNGITLD---LLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVF--  217 (316)
T ss_dssp             SCCEEEE--ECSSCSCEEEEEEE---TTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECTTTTSSEEEEEEE--
T ss_pred             CCCeEEE--EECCCCCceEEEEe---ccCCEEEEEECCCCeEEEEecCCCce-------EEEeecCCccCCcEEEEEE--
Confidence            1111111  11123456889999   6544 445555678999999875311       1111111122345667764  


Q ss_pred             CCCeEEEeeCCceEEEEe
Q 025649          231 ESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       231 ~~~~l~s~~~d~~i~vw~  248 (250)
                      .+.++++-...+.|..++
T Consensus       218 ~~~ly~~d~~~~~V~~~~  235 (316)
T 1ijq_A          218 EDKVFWTDIINEAIFSAN  235 (316)
T ss_dssp             TTEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEECCCCeEEEEe
Confidence            344455555566777665

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.23  E-value=0.00057  Score=49.50  Aligned_cols=190  Identities=4%  Similarity=-0.098  Sum_probs=103.6

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |..+|+..+.....+. ........+++++++..++++-...+.|.++++.... ...+...            ......
T Consensus        60 I~~~~~~g~~~~~~~~-~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~------------~~~~P~  125 (267)
T 1npe_A           60 IGRASLHGGEPTTIIR-QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDT------------GLVNPR  125 (267)
T ss_dssp             EEEEESSSCCCEEEEC-TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECS------------SCSSEE
T ss_pred             EEEEecCCCCcEEEEE-CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEEC------------CCCCcc
Confidence            4556655443322232 2234678999999766466677778899999986432 2222211            113457


Q ss_pred             EEecCCCcccCCCCCEEEEEeC---CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-------eeeecc
Q 025649           82 AIAIPDADMLDKTNKICVVAKG---DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-------ILDQSG  151 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  151 (250)
                      .+++.|      ++..|..+..   .+.|..+++......... .........+++++++..+....       ..+...
T Consensus       126 ~i~vd~------~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~-~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g  198 (267)
T 1npe_A          126 GIVTDP------VRGNLYWTDWNRDNPKIETSHMDGTNRRILA-QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ  198 (267)
T ss_dssp             EEEEET------TTTEEEEEECCSSSCEEEEEETTSCCCEEEE-CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred             EEEEee------CCCEEEEEECCCCCcEEEEEecCCCCcEEEE-ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence            888887      6666655543   468888888653322111 11124567889999876554211       111111


Q ss_pred             CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC-CceeEEEecC
Q 025649          152 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTP  229 (250)
Q Consensus       152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~  229 (250)
                       ....  ..+.+ ......++..    ++.++++....+.|..+|..++         +.+....... .....+++.|
T Consensus       199 -~~~~--~~~~~-~~~P~gi~~d----~~~lyva~~~~~~v~~~d~~~g---------~~~~~i~~g~~~~p~gi~~~~  260 (267)
T 1npe_A          199 -PGRR--KVLEG-LQYPFAVTSY----GKNLYYTDWKTNSVIAMDLAIS---------KEMDTFHPHKQTRLYGITIAL  260 (267)
T ss_dssp             -EEEE--EEEEC-CCSEEEEEEE----TTEEEEEETTTTEEEEEETTTT---------EEEEEECCSSCCCCCCEEEEC
T ss_pred             -CceE--EEecC-CCCceEEEEe----CCEEEEEECCCCeEEEEeCCCC---------CceEEEccccccccceeeecC
Confidence             1111  11111 1233566654    3455555556789999999987         3333332222 2466777776

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.22  E-value=0.00071  Score=50.15  Aligned_cols=202  Identities=7%  Similarity=-0.025  Sum_probs=109.1

Q ss_pred             cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCC
Q 025649            9 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA   88 (250)
Q Consensus         9 ~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   88 (250)
                      +.+.+..+. .. .....++|++++. ++++-..++.|..||... +....+..              .....++++.+ 
T Consensus        21 ~~~~~~~~p-~~-~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g-~~~~~~~~--------------~~~p~gia~~~-   81 (306)
T 2p4o_A           21 PAKIITSFP-VN-TFLENLASAPDGT-IFVTNHEVGEIVSITPDG-NQQIHATV--------------EGKVSGLAFTS-   81 (306)
T ss_dssp             CEEEEEEEC-TT-CCEEEEEECTTSC-EEEEETTTTEEEEECTTC-CEEEEEEC--------------SSEEEEEEECT-
T ss_pred             CceEeEeCC-CC-CCcceEEECCCCC-EEEEeCCCCeEEEECCCC-ceEEEEeC--------------CCCceeEEEcC-
Confidence            455666665 32 5678999999998 788877889999999864 33333332              24678899998 


Q ss_pred             cccCCCCCEEEEEeCC-C-eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee------eeeeccCeeeeee--
Q 025649           89 DMLDKTNKICVVAKGD-G-VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSGGKRLHLD--  158 (250)
Q Consensus        89 ~~~~~~~~~l~~~~~d-~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--  158 (250)
                           +++++++.... + .|..+|..+++...............++..+++..+++..      ..+.... ..+..  
T Consensus        82 -----dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~-~~~v~~~  155 (306)
T 2p4o_A           82 -----NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP-SGSIWLE  155 (306)
T ss_dssp             -----TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred             -----CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCC-cEeEEEE
Confidence                 88866655432 2 4777787776654332222112222333334443333210      0111000 00100  


Q ss_pred             c------cccCccccEEEEEeecCCCCCcEE-EEeeCCCeEEEEecCC-CcceecccccceeeeeeccCCceeEEEecCC
Q 025649          159 Y------SVGGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSR-FQGVQTSINNDLLIKNINLNKKVNWLCTTPT  230 (250)
Q Consensus       159 ~------~~~~h~~~v~~~~~~p~~~~~~~l-~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  230 (250)
                      .      .....-.....+  +   +++++| ++-...+.|..+|+.. +...    ..+.+..    ......+++.+ 
T Consensus       156 ~~~~~~~~~~~~~~~pngi--s---~dg~~lyv~d~~~~~I~~~~~~~~g~~~----~~~~~~~----~~~P~gi~vd~-  221 (306)
T 2p4o_A          156 HPMLARSNSESVFPAANGL--K---RFGNFLYVSNTEKMLLLRIPVDSTDKPG----EPEIFVE----QTNIDDFAFDV-  221 (306)
T ss_dssp             CGGGSCSSTTCCSCSEEEE--E---EETTEEEEEETTTTEEEEEEBCTTSCBC----CCEEEEE----SCCCSSEEEBT-
T ss_pred             CCccccccccCCCCcCCCc--C---cCCCEEEEEeCCCCEEEEEEeCCCCCCC----ccEEEec----cCCCCCeEECC-
Confidence            0      001111234555  6   666544 5555678999999875 2110    0011111    13456678886 


Q ss_pred             CCCeEEEeeCCceEEEEeC
Q 025649          231 ESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       231 ~~~~l~s~~~d~~i~vw~~  249 (250)
                      +|.++++....+.|.+++.
T Consensus       222 dG~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          222 EGNLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             TCCEEEECBTTCCEEEECT
T ss_pred             CCCEEEEeCCCCeEEEECC
Confidence            7776666556677887763

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.21  E-value=0.0011  Score=51.86  Aligned_cols=223  Identities=9%  Similarity=0.002  Sum_probs=115.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC---Ce-EEEEEccCCCCc-cceecCCCCCCCCCCcccC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD---SK-LVMWDFSKGRPN-KIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d---g~-v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~   76 (250)
                      |+.+|+.+++.....  ........+++++++. ++++....   .. +...+...+... ..+.              .
T Consensus       164 I~~id~~~g~v~~~~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~--------------~  226 (433)
T 4hw6_A          164 FRHVDFVNQYVDIKT--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC--------------N  226 (433)
T ss_dssp             EEEEETTTTEEEEEC--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE--------------E
T ss_pred             EEEEECCCCEEEEee--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc--------------c
Confidence            677787777665433  3445678999999998 67665432   12 222332211110 0110              1


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE-eeccCCCCCCccceeecccceeEEEee-------eee
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSKVNIRDAEME-------ILD  148 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  148 (250)
                      ......+++.|     .++.+.++-..++.|+.+|..++... .............++++|+|+.+....       ..+
T Consensus       227 ~~~P~giavd~-----~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~  301 (433)
T 4hw6_A          227 ARGAKTCAVHP-----QNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVD  301 (433)
T ss_dssp             CSSBCCCEECT-----TTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cCCCCEEEEeC-----CCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEe
Confidence            12335566665     24555555567789999999876552 222222222334699999998544211       111


Q ss_pred             ecc-Ceee---eee-ccc--cC---------ccccEEEEEe---------ecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649          149 QSG-GKRL---HLD-YSV--GG---------HTAAASCVAF---------SMFGERGKYLISGGNDKLVKVWDCSRFQGV  203 (250)
Q Consensus       149 ~~~-~~~~---~~~-~~~--~~---------h~~~v~~~~~---------~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~  203 (250)
                      ... ....   ..+ ..+  .+         .-.....+++         .   ++|+++++-...+.|+.++. .+...
T Consensus       302 ~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd---~~g~lyvaD~~n~~I~~~~~-~G~v~  377 (433)
T 4hw6_A          302 YNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE---DEYDFYFCDRDSHTVRVLTP-EGRVT  377 (433)
T ss_dssp             BCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS---CCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred             CCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC---CCCcEEEEECCCCEEEEECC-CCCEE
Confidence            100 0000   000 000  00         1123567888         5   67888887777889999985 33211


Q ss_pred             ecccccc-----eeee---eeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          204 QTSINND-----LLIK---NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       204 ~~~~~~~-----~~~~---~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .......     ....   ....-.....|++.|.++.++++=..++.|+.++++
T Consensus       378 t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          378 TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            1000000     0000   000112477899996577766665667889888753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.20  E-value=0.0008  Score=49.84  Aligned_cols=185  Identities=10%  Similarity=-0.001  Sum_probs=93.6

Q ss_pred             CCeeeEEEcCCCCeEEEEecC-C-CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649           22 SICSSVQFIPWKPWEVISGGL-D-SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV   99 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~-d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~   99 (250)
                      .....+++.++++ ++++... + ..|..+|..+++........            .......++..+      ++..++
T Consensus        72 ~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~~------------~~~~~~g~~~~~------~~~~~v  132 (306)
T 2p4o_A           72 GKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTLP------------DAIFLNGITPLS------DTQYLT  132 (306)
T ss_dssp             SEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEECT------------TCSCEEEEEESS------SSEEEE
T ss_pred             CCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeCC------------CccccCcccccC------CCcEEE
Confidence            4678999999998 6665533 2 24666777776643322211            011223444333      455555


Q ss_pred             EEeCCCeEEEEeCCCceeEee--c------c-CCCCCCccceeecccceeEEEee-------eeeeccCeeeeeeccccC
Q 025649          100 VAKGDGVVDVINIESELNISR--S------K-STTKPLKGSQSTSKVNIRDAEME-------ILDQSGGKRLHLDYSVGG  163 (250)
Q Consensus       100 ~~~~d~~i~~~d~~~~~~~~~--~------~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  163 (250)
                      +-..++.|.++|..++.....  .      . ...-.....+  +++++.+....       .++............+. 
T Consensus       133 ~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-  209 (306)
T 2p4o_A          133 ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-  209 (306)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-
T ss_pred             EECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-
Confidence            555688999999876432110  0      0 0001122333  77776554221       11211100000000110 


Q ss_pred             ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC--CCCCeEEEee
Q 025649          164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP--TESENLVVCD  239 (250)
Q Consensus       164 h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~  239 (250)
                      .......+++.   ++|+++++....+.|.++|.. +..       ..+.........+.+++|..  ++++.|+.++
T Consensus       210 ~~~~P~gi~vd---~dG~l~va~~~~~~V~~~~~~-G~~-------~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          210 EQTNIDDFAFD---VEGNLYGATHIYNSVVRIAPD-RST-------TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             ESCCCSSEEEB---TTCCEEEECBTTCCEEEECTT-CCE-------EEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             ccCCCCCeEEC---CCCCEEEEeCCCCeEEEECCC-CCE-------EEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence            01234567788   889888877778899999975 311       01111222235578899872  2655555543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.17  E-value=0.0012  Score=50.91  Aligned_cols=215  Identities=7%  Similarity=-0.109  Sum_probs=111.4

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC---CccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR---PNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |+..|+........+.  ....+..|+|++.+..++++-...+.|+.+++....   ....+...            ...
T Consensus        94 I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~------------~~~  159 (400)
T 3p5b_L           94 VRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------------DIQ  159 (400)
T ss_dssp             EEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS------------SCS
T ss_pred             eEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC------------CCC
Confidence            4455555444333333  445678999998766466666677889999886422   11122111            123


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee-eccCe---e
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-QSGGK---R  154 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~  154 (250)
                      ....+++.+     ..+++.++-...+.|.+.++........... .......++++|.+..+....... .....   .
T Consensus       160 ~p~glavD~-----~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d  233 (400)
T 3p5b_L          160 APDGLAVDW-----IHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  233 (400)
T ss_dssp             CEEEEEEET-----TTTEEEEEETTTTEEEEECTTTCSEEEEEEC-SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred             CcccEEEEe-----cCCceEEEECCCCeEEEEeCCCCceEEEEeC-CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence            456777765     2455555656778999999986544333322 224567889998655544111000 00000   0


Q ss_pred             eeeeccc-cCccccEEEEEeecCCCCCcEE-EEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649          155 LHLDYSV-GGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES  232 (250)
Q Consensus       155 ~~~~~~~-~~h~~~v~~~~~~p~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (250)
                      ......+ ...-.....++++   +++..| ++-+..+.|..+|+.....       ..+......-.....++..  .+
T Consensus       234 G~~~~~~~~~~l~~P~glavd---~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~~~~~~~~l~~P~gl~v~--~~  301 (400)
T 3p5b_L          234 GVDIYSLVTENIQWPNGITLD---LLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVF--ED  301 (400)
T ss_dssp             SCSCEEEECSSCSCEEEEEEE---TTTTEEEEEETTTTEEEEEETTSCCC-------EEEEECSSTTSSEEEEEEE--TT
T ss_pred             CCccEEEEECCCCceEEEEEE---eCCCEEEEEECCCCEEEEEeCCCCcc-------EEEEeCCCCCCCCEEEEEe--CC
Confidence            0000111 1222457889999   555544 4445578999999876421       1111111112334556653  33


Q ss_pred             CeEEEeeCCceEEEEe
Q 025649          233 ENLVVCDTSKVVKVYS  248 (250)
Q Consensus       233 ~~l~s~~~d~~i~vw~  248 (250)
                      .++.+-...+.|..+|
T Consensus       302 ~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          302 KVFWTDIINEAIFSAN  317 (400)
T ss_dssp             EEEEEESSSCSEEEEE
T ss_pred             EEEEecCCCCeEEEEE
Confidence            3444444555666555

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.16  E-value=0.00079  Score=50.24  Aligned_cols=71  Identities=10%  Similarity=-0.006  Sum_probs=46.5

Q ss_pred             CeeeEEEcC-CCCeEEEEecC-----------------CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEe
Q 025649           23 ICSSVQFIP-WKPWEVISGGL-----------------DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA   84 (250)
Q Consensus        23 ~v~~l~~~~-~~~~~l~s~s~-----------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   84 (250)
                      ....+++.+ +|. +.++-..                 ++.|..+|..+++...... .             ......++
T Consensus       127 ~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~-------------~~~p~gia  191 (322)
T 2fp8_A          127 WLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-E-------------LHVPGGAE  191 (322)
T ss_dssp             CEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-E-------------ESCCCEEE
T ss_pred             ccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-C-------------CccCcceE
Confidence            467899999 887 5555432                 3678888876654322211 1             12345688


Q ss_pred             cCCCcccCCCCCEEEEE-eCCCeEEEEeCCC
Q 025649           85 IPDADMLDKTNKICVVA-KGDGVVDVINIES  114 (250)
Q Consensus        85 ~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~  114 (250)
                      ++|      +++.|.++ ..++.|..|++..
T Consensus       192 ~~~------dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          192 VSA------DSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             ECT------TSSEEEEEEGGGTEEEEEESSS
T ss_pred             ECC------CCCEEEEEeCCCCeEEEEECCC
Confidence            888      88866555 5668899999874

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.07  E-value=0.0015  Score=48.48  Aligned_cols=182  Identities=8%  Similarity=0.047  Sum_probs=100.4

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEec---CCCcccCCCC
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI---PDADMLDKTN   95 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~   95 (250)
                      +...--.+++|++....++++.-..++|..||...+..... ..+.......     ....+.++.+   .|      ++
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~-----~~~~~sGl~~~~~D~------~g   77 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGD-----GEQQMSGLSLLTHDN------SK   77 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSC-----CSEEEEEEEESSSSS------CC
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCC-----CcceeeEEEEeccCC------CC
Confidence            34445578999886663555555899999999975543322 2220000000     0123478888   46      67


Q ss_pred             CEEEEEe-------------CCCeEEEEeCC---CceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeec
Q 025649           96 KICVVAK-------------GDGVVDVINIE---SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY  159 (250)
Q Consensus        96 ~~l~~~~-------------~d~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (250)
                      +++++..             .+..|..||+.   +++........                          ....  -..
T Consensus        78 rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~--------------------------~~~~--~~~  129 (334)
T 2p9w_A           78 RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFE--------------------------KVQD--EFE  129 (334)
T ss_dssp             EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESH--------------------------HHHH--HHH
T ss_pred             cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCc--------------------------cccc--ccc
Confidence            7776543             25778888888   55433221110                          0000  000


Q ss_pred             cccCc-cccEEEEEeecCCCCCcEEEEeeCC-CeEEEEecCCCcceecccccceeeee--eccCCceeEEEecCCCCCeE
Q 025649          160 SVGGH-TAAASCVAFSMFGERGKYLISGGND-KLVKVWDCSRFQGVQTSINNDLLIKN--INLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       160 ~~~~h-~~~v~~~~~~p~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l  235 (250)
                      ...+. ......++..   ++|+..++++.- +.|...+.......      ......  .......+.|++.| ++..|
T Consensus       130 ~~~g~~~~~~nDvavD---~~GnaYVt~s~~~~~I~rV~pdG~~~~------~~~~~~~~~~~~~G~nGIv~~p-dg~~L  199 (334)
T 2p9w_A          130 KKAGKRPFGVVQSAQD---RDGNSYVAFALGMPAIARVSADGKTVS------TFAWESGNGGQRPGYSGITFDP-HSNKL  199 (334)
T ss_dssp             HHHSSCCEEEEEEEEC---TTSCEEEEEEESSCEEEEECTTSCCEE------EEEECCCCSSSCCSCSEEEEET-TTTEE
T ss_pred             ccccccccCCceeEEC---CCCCEEEeCCCCCCeEEEEeCCCCEEe------eeeecCCCcccccCcceEEEeC-CCCEE
Confidence            00111 1246778888   788888877776 77666666543110      000000  11122467899998 88877


Q ss_pred             EEeeCCceEEEEeCC
Q 025649          236 VVCDTSKVVKVYSIS  250 (250)
Q Consensus       236 ~s~~~d~~i~vw~~~  250 (250)
                      ++...+|.+..+|+.
T Consensus       200 iv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          200 IAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEESSSSSEEEEECS
T ss_pred             EEEcCCCeEEEEcCC
Confidence            777669999888863

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.06  E-value=0.0011  Score=53.60  Aligned_cols=86  Identities=13%  Similarity=-0.000  Sum_probs=50.5

Q ss_pred             eEEEcCCCCeEEEEecCC----------------CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649           26 SVQFIPWKPWEVISGGLD----------------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD   89 (250)
Q Consensus        26 ~l~~~~~~~~~l~s~s~d----------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (250)
                      .+++.++.. ++..+..+                +.|..+|.++|+.+..++....+.-..   ......+. +...+  
T Consensus       239 ~~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~---~~~~~p~l-~~~~~--  311 (571)
T 2ad6_A          239 WYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF---AGVNQMVL-TDQPV--  311 (571)
T ss_dssp             CCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC---CCCCCCEE-EEEEE--
T ss_pred             eEEEcCCCC-eEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccccc---ccCCCCEE-Eeccc--
Confidence            356677665 55554432                369999999999888876431000000   00011111 11111  


Q ss_pred             ccCCCC---CEEEEEeCCCeEEEEeCCCceeEeecc
Q 025649           90 MLDKTN---KICVVAKGDGVVDVINIESELNISRSK  122 (250)
Q Consensus        90 ~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~  122 (250)
                          ++   +.++.++.+|.+.++|..+++.+....
T Consensus       312 ----~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          312 ----NGKMTPLLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             ----TTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ----CCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence                46   357788899999999999998775543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.03  E-value=0.0019  Score=48.13  Aligned_cols=213  Identities=8%  Similarity=-0.095  Sum_probs=112.7

Q ss_pred             cEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc-ceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK-IVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |+.+|+....  ....+.  .......++|++.+..++.+-...+.|..+++..+.... .+..+             ..
T Consensus        15 I~~i~l~~~~~~~~~~~~--~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-------------l~   79 (318)
T 3sov_A           15 LRLVDATNGKENATIVVG--GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-------------LL   79 (318)
T ss_dssp             EEEEETTCTTSCCEEEEE--EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-------------CS
T ss_pred             EEEEECCCCceEEEEEec--CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC-------------CC
Confidence            5666766542  111222  223466899998665466777778899999987653222 12211             12


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeee-eeccC---ee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL-DQSGG---KR  154 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~  154 (250)
                      ...++++.+     ..+++..+-...+.|.++++.......... ........++++|.+..+...... .....   ..
T Consensus        80 ~p~glavd~-----~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  153 (318)
T 3sov_A           80 SPDGLACDW-----LGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD  153 (318)
T ss_dssp             CCCEEEEET-----TTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred             CccEEEEEc-----CCCeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence            345666665     245555666677899999987643322221 222456788999865554411100 00000   00


Q ss_pred             eeeeccc-cCccccEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCC
Q 025649          155 LHLDYSV-GGHTAAASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES  232 (250)
Q Consensus       155 ~~~~~~~-~~h~~~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (250)
                      ......+ ...-.....++++   ++ +++..+-+..+.|..+|+.....       ..  ...+.......+++.  .+
T Consensus       154 G~~~~~~~~~~l~~Pnglavd---~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~--~~~~~~~~P~glav~--~~  219 (318)
T 3sov_A          154 GSSRFIIINSEIYWPNGLTLD---YEEQKLYWADAKLNFIHKSNLDGTNR-------QA--VVKGSLPHPFALTLF--ED  219 (318)
T ss_dssp             SCSCEEEECSSCSCEEEEEEE---TTTTEEEEEETTTTEEEEEETTSCSC-------EE--EECSCCSCEEEEEEE--TT
T ss_pred             CCCeEEEEECCCCCccEEEEe---ccCCEEEEEECCCCEEEEEcCCCCce-------EE--EecCCCCCceEEEEe--CC
Confidence            0000111 1122356889999   64 44555556678999999875321       11  111223345666664  23


Q ss_pred             CeEEEeeCCceEEEEeC
Q 025649          233 ENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       233 ~~l~s~~~d~~i~vw~~  249 (250)
                      .++.+-...+.|..++.
T Consensus       220 ~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          220 ILYWTDWSTHSILACNK  236 (318)
T ss_dssp             EEEEEETTTTEEEEEET
T ss_pred             EEEEEecCCCeEEEEEC
Confidence            34445445566666653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=98.03  E-value=0.0006  Score=52.28  Aligned_cols=151  Identities=9%  Similarity=-0.079  Sum_probs=90.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeEeeccCC---CCCCccceeecccceeEEEeeeeeeccC---------ee------e
Q 025649           94 TNKICVVAKGDGVVDVINIESELNISRSKST---TKPLKGSQSTSKVNIRDAEMEILDQSGG---------KR------L  155 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~------~  155 (250)
                      ++..++.+ .++.||.-++..+..-+....+   .-..+..+..+|+|.+++..+.......         ..      .
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~  109 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF  109 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence            56666665 4588898888744322223332   1236788999999999996443322210         00      0


Q ss_pred             e----eecccc-CccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec-ccccceeeeeeccCCceeEEEecC
Q 025649          156 H----LDYSVG-GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT-SINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       156 ~----~~~~~~-~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                      +    .+..+. ....+|..+.|+|...++..|++-..|+.|++||+........ ................|.+++|.+
T Consensus       110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~  189 (452)
T 3pbp_A          110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK  189 (452)
T ss_dssp             EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred             ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence            1    011111 1256799999998887888999999999999999997332110 000000011122335688899987


Q ss_pred             CCCCeEEEee--CCceEEE
Q 025649          230 TESENLVVCD--TSKVVKV  246 (250)
Q Consensus       230 ~~~~~l~s~~--~d~~i~v  246 (250)
                       ++-.|...+  .+|.|+-
T Consensus       190 -~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          190 -DGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             -TSSCEEEEECTTSCEEEE
T ss_pred             -CCcEEEEEecCCCCCEEE
Confidence             776676644  7787754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.97  E-value=0.0032  Score=48.37  Aligned_cols=175  Identities=8%  Similarity=-0.095  Sum_probs=93.2

Q ss_pred             CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC
Q 025649           44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  123 (250)
Q Consensus        44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  123 (250)
                      ..|+..++........+.              ......+++|.+     .++.++.+-...+.|..+++...........
T Consensus        96 ~~I~~i~~~~~~~~~~~~--------------~~~~~~gl~~d~-----~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  156 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLN--------------NLENAIALDFHH-----RRELVFWSDVTLDRILRANLNGSNVEEVVST  156 (386)
T ss_dssp             SCEEEECTTSCCCEEEEC--------------SCSCEEEEEEET-----TTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred             ccceeeccCCCcEEEEec--------------CCCccEEEEEec-----CCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence            567777776544333222              234578899886     2444555555778999999987653332222


Q ss_pred             CCCCCccceeecccceeE-EEeee---eeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC-CeEEEEecC
Q 025649          124 TTKPLKGSQSTSKVNIRD-AEMEI---LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-KLVKVWDCS  198 (250)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d-~~i~iwd~~  198 (250)
                      . ......+++++.+..+ .+...   ..............+.........+++.|  .++.++.+-... +.|..+++.
T Consensus       157 ~-~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp--~~g~ly~td~~~~~~I~r~~~d  233 (386)
T 3v65_B          157 G-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHP--MEGTIYWTDWGNTPRIEASSMD  233 (386)
T ss_dssp             S-CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEET--TTTEEEEEECSSSCEEEEEETT
T ss_pred             C-CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEc--CCCeEEEeccCCCCEEEEEeCC
Confidence            1 2345678888754443 32110   00000000000011122234568899993  244455554445 788888887


Q ss_pred             CCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          199 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ...         ........-...+.|++.|.++.+.++=...+.|..+++
T Consensus       234 G~~---------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~  275 (386)
T 3v65_B          234 GSG---------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  275 (386)
T ss_dssp             SCS---------CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred             CCC---------cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            642         111111223357889998745544445455677887765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.96  E-value=0.0034  Score=51.08  Aligned_cols=87  Identities=13%  Similarity=0.041  Sum_probs=52.6

Q ss_pred             eEEEcCCCCeEEEEecCC----------------CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649           26 SVQFIPWKPWEVISGGLD----------------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD   89 (250)
Q Consensus        26 ~l~~~~~~~~~l~s~s~d----------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (250)
                      .+++.+... +++.+..+                +.|..+|.++|+.+..++....+.-   ........+. +...   
T Consensus       245 ~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~w---d~d~~~~p~l-~d~~---  316 (599)
T 1w6s_A          245 WYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEW---DYAGVNVMML-SEQK---  316 (599)
T ss_dssp             CCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSS---CCCCCCCCEE-EEEE---
T ss_pred             ceeEeCCCC-EEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccc---cccCCCccEE-Eecc---
Confidence            345666666 66666554                4899999999999888874411000   0000001111 1111   


Q ss_pred             ccCCCC---CEEEEEeCCCeEEEEeCCCceeEeecc
Q 025649           90 MLDKTN---KICVVAKGDGVVDVINIESELNISRSK  122 (250)
Q Consensus        90 ~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~  122 (250)
                        +.++   ..++.++.+|.+.++|.++++.+....
T Consensus       317 --~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          317 --DKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             --CTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             --ccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence              0156   567778999999999999998775543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.96  E-value=0.006  Score=51.30  Aligned_cols=174  Identities=6%  Similarity=-0.046  Sum_probs=93.4

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC----CccceecCCCCCCCCCCcccCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR----PNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      |+..++...+....+.  ....+..|+|.+....++++-...+.|+.+++....    ....+..+             .
T Consensus       406 Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~-------------l  470 (791)
T 3m0c_C          406 VRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-------------I  470 (791)
T ss_dssp             EEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-------------C
T ss_pred             eeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC-------------C
Confidence            3444444333332333  345667999998665466777777889988886421    11111111             2


Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE-Ee-ee---eeec--
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA-EM-EI---LDQS--  150 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~---~~~~--  150 (250)
                      .....|++.+     ..+++.++-...+.|.+.++........+. ........|+++|.+..|+ +. +.   ....  
T Consensus       471 ~~P~GLAvD~-----~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~  544 (791)
T 3m0c_C          471 QAPDGLAVDW-----IHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  544 (791)
T ss_dssp             SCCCEEEEET-----TTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             CCcceeeeee-----cCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence            3345677765     134555566678899999998654333322 2224577899998754444 21 10   0000  


Q ss_pred             cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649          151 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  200 (250)
Q Consensus       151 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~  200 (250)
                      ++.....  .+...-.....|++.|  ..+++.++-...+.|...++...
T Consensus       545 dG~~~~~--lv~~~l~~P~GLavD~--~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          545 NGVDIYS--LVTENIQWPNGITLDL--LSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             TSCCEEE--EECSSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCceEE--EEeCCCCCceEEEEec--CCCeEEEEeCCCCcEEEEecCCC
Confidence            1111111  1122234678899983  33444445455678999998764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.95  E-value=0.00045  Score=56.99  Aligned_cols=101  Identities=13%  Similarity=0.036  Sum_probs=60.5

Q ss_pred             eEEEcC-CCCeEEEEecCCC-----------eEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649           26 SVQFIP-WKPWEVISGGLDS-----------KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK   93 (250)
Q Consensus        26 ~l~~~~-~~~~~l~s~s~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (250)
                      ..++.+ +++ +++.|+.+.           .+.+||..+++.........          .+.....++++.+      
T Consensus       190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~----------~~~~~~~~~~~~~------  252 (656)
T 1k3i_A          190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT----------KHDMFCPGISMDG------  252 (656)
T ss_dssp             EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC----------SCCCSSCEEEECT------
T ss_pred             eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC----------CCCCccccccCCC------
Confidence            566777 777 777776542           58899998776432221110          0112233455555      


Q ss_pred             CCCEEEEEe-CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE
Q 025649           94 TNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE  143 (250)
Q Consensus        94 ~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (250)
                      ++++++.|+ .++.+.+||..+++.......+....-..+...++|+.++.
T Consensus       253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~  303 (656)
T 1k3i_A          253 NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTI  303 (656)
T ss_dssp             TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEE
T ss_pred             CCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEE
Confidence            889999988 45689999998876554332222222234555668887773

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.94  E-value=0.0036  Score=50.83  Aligned_cols=71  Identities=17%  Similarity=0.012  Sum_probs=43.4

Q ss_pred             CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCC---CEEEEEeCCCeEEEEeCCCceeEee
Q 025649           44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN---KICVVAKGDGVVDVINIESELNISR  120 (250)
Q Consensus        44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~  120 (250)
                      +.|..+|.++|+.+..++....+.-.   .......+. +....     .++   ..++.++.+|.++++|.++++.+..
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd---~~~~~~p~l-~~~~~-----~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~  361 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWD---FSGNNELVL-FDYKA-----KDGKIVKATAHADRNGFFYVVDRSNGKLQNA  361 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSC---CCCCCCCEE-EEEEC-----SSSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCccc---ccCCCCcEE-Eeeec-----CCCCEEEEEEEECCCceEEEEECCCCCEecc
Confidence            68999999999998888743110000   000001111 11110     145   4788899999999999999988765


Q ss_pred             ccC
Q 025649          121 SKS  123 (250)
Q Consensus       121 ~~~  123 (250)
                      ...
T Consensus       362 ~~~  364 (582)
T 1flg_A          362 FPF  364 (582)
T ss_dssp             EES
T ss_pred             ccc
Confidence            443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.90  E-value=0.0017  Score=50.63  Aligned_cols=149  Identities=7%  Similarity=-0.046  Sum_probs=86.2

Q ss_pred             eeEEecCCCcccCCC-CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCe-----
Q 025649           80 VHAIAIPDADMLDKT-NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK-----  153 (250)
Q Consensus        80 v~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  153 (250)
                      ...++++|      + +..|.++...+.|+.+|+..+.......  .......++++++|+.+............     
T Consensus       139 P~~lavdp------~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~  210 (430)
T 3tc9_A          139 AVWLSFDP------KNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNNYIL  210 (430)
T ss_dssp             CCEEEEET------TEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred             CCEEEECC------CCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence            34566664      3 4455555555889999998766544333  23567889999999855533221111000     


Q ss_pred             ----eeeeeccccCccccEEEEEeecCCC-CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649          154 ----RLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT  228 (250)
Q Consensus       154 ----~~~~~~~~~~h~~~v~~~~~~p~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  228 (250)
                          .......+.. ......++++   | +|.++++-..++.|..+|...+...       .+ ...+.......++++
T Consensus       211 ~~~g~~~~~~~l~~-~~~p~giavd---p~~g~lyv~d~~~~~V~~~~~~~~~~~-------~~-~~~~~~~~P~gia~~  278 (430)
T 3tc9_A          211 TRESGFKVITELTK-GQNCNGAETH---PINGELYFNSWNAGQVFRYDFTTQETT-------PL-FTIQDSGWEFHIQFH  278 (430)
T ss_dssp             EGGGTSCSEEEEEE-CSSCCCEEEC---TTTCCEEEEETTTTEEEEEETTTTEEE-------EE-EECSSSSCCEEEEEC
T ss_pred             eCCCceeeeeeecc-CCCceEEEEe---CCCCEEEEEECCCCEEEEEECCCCcEE-------EE-EEcCCCCcceeEEEc
Confidence                0000011111 1234567888   7 7777777777889999999875210       11 111222457789999


Q ss_pred             CCCCCeE-EEeeCCceEEEEeC
Q 025649          229 PTESENL-VVCDTSKVVKVYSI  249 (250)
Q Consensus       229 ~~~~~~l-~s~~~d~~i~vw~~  249 (250)
                      | ++++| ++-...+.|..++.
T Consensus       279 p-dG~~lyv~d~~~~~I~~~~~  299 (430)
T 3tc9_A          279 P-SGNYAYIVVVNQHYILRSDY  299 (430)
T ss_dssp             T-TSSEEEEEETTTTEEEEEEE
T ss_pred             C-CCCEEEEEECCCCEEEEEeC
Confidence            8 78744 44456778888763

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.90  E-value=0.0065  Score=49.81  Aligned_cols=210  Identities=6%  Similarity=-0.063  Sum_probs=114.8

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |+..|+++.+....+....-.....|+|++.+..++++-..++.|..+++........+..+             .....
T Consensus        17 I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g-------------~~~P~   83 (628)
T 4a0p_A           17 IRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-------------LDYPE   83 (628)
T ss_dssp             EEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-------------CSCCC
T ss_pred             EEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-------------CCCcc
Confidence            56667765443333321223457799999977646677777899999998654333223211             12345


Q ss_pred             EEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeeccc-ceeEEEeeeeeec------cCee
Q 025649           82 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV-NIRDAEMEILDQS------GGKR  154 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~  154 (250)
                      .+++.+     ..+++..+-...+.|.+.++.......... ..-.....++++|. |.++.+.-.....      +...
T Consensus        84 GlAvD~-----~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~  157 (628)
T 4a0p_A           84 GMAVDW-----LGKNLYWADTGTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE  157 (628)
T ss_dssp             EEEEET-----TTTEEEEEETTTTEEEEEETTSTTCEEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             eEEEEe-----CCCEEEEEECCCCEEEEEecCCCcEEEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence            666665     145555665677899999997654322221 22245678999985 4444432100000      1111


Q ss_pred             eeeeccccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC
Q 025649          155 LHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE  233 (250)
Q Consensus       155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  233 (250)
                      .+.   +...-.....++++   +++. +..+-...+.|...|+.....       +   .+.........+++..  +.
T Consensus       158 ~~~---l~~~~~~P~GlalD---~~~~~LY~aD~~~~~I~~~d~dG~~~-------~---v~~~~l~~P~glav~~--~~  219 (628)
T 4a0p_A          158 RTT---LVPNVGRANGLTID---YAKRRLYWTDLDTNLIESSNMLGLNR-------E---VIADDLPHPFGLTQYQ--DY  219 (628)
T ss_dssp             CEE---EECSCSSEEEEEEE---TTTTEEEEEETTTTEEEEEETTSCSC-------E---EEEECCSCEEEEEEET--TE
T ss_pred             eEE---EECCCCCcceEEEc---cccCEEEEEECCCCEEEEEcCCCCce-------E---EeeccCCCceEEEEEC--CE
Confidence            111   11233467899999   6544 444555678999999876421       1   1222233455677653  33


Q ss_pred             eEEEeeCCceEEEEe
Q 025649          234 NLVVCDTSKVVKVYS  248 (250)
Q Consensus       234 ~l~s~~~d~~i~vw~  248 (250)
                      ++.+-...+.|...|
T Consensus       220 ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          220 IYWTDWSRRSIERAN  234 (628)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEecCCCCEEEEEE
Confidence            334433466666655

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.80  E-value=0.0058  Score=46.21  Aligned_cols=190  Identities=9%  Similarity=-0.065  Sum_probs=99.9

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  102 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  102 (250)
                      ..+|.+..++ . .|+.+. ...|+..++........+.              ......+++|.+     .++.++.+-.
T Consensus        35 ~~~C~~~~~~-~-~ll~~~-~~~I~~i~~~g~~~~~~~~--------------~~~~~~~l~~d~-----~~~~ly~~D~   92 (349)
T 3v64_C           35 RRSCKALGPE-P-VLLFAN-RIDIRQVLPHRSEYTLLLN--------------NLENAIALDFHH-----RRELVFWSDV   92 (349)
T ss_dssp             SSCEEESSSC-C-EEEEEC-BSCEEEECTTSCCEEEEEC--------------SCSCEEEEEEET-----TTTEEEEEET
T ss_pred             CCcccccccC-c-eeEeec-ccceEEEeCCCCeeEEeec--------------CCCceEEEEEec-----cccEEEEEec
Confidence            3456555553 3 333332 3457777775443322222              234578889886     2444445555


Q ss_pred             CCCeEEEEeCCCceeEeeccCCCCCCccceeecccce-eEEEee------eeeeccCeeeeeeccccCccccEEEEEeec
Q 025649          103 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI-RDAEME------ILDQSGGKRLHLDYSVGGHTAAASCVAFSM  175 (250)
Q Consensus       103 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  175 (250)
                      ..+.|..+++............ ......+++++.+. .+.+..      ..+. +......  .+.........+++.|
T Consensus        93 ~~~~I~r~~~~g~~~~~~~~~~-~~~p~glavd~~~g~ly~~d~~~~~I~~~~~-dG~~~~~--l~~~~l~~P~~iavdp  168 (349)
T 3v64_C           93 TLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANL-DGAHRKV--LLWQSLEKPRAIALHP  168 (349)
T ss_dssp             TTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEET-TSCSCEE--EECTTCSCEEEEEEET
T ss_pred             cCCceEEEecCCCCceEEEeCC-CCCccEEEEecCCCeEEEEcCCCCeEEEEcC-CCCceEE--EEeCCCCCcceEEEec
Confidence            7789999999875433322221 13456788887544 333211      1111 1111111  1112234568899993


Q ss_pred             CCCCCcEEEEeeCC-CeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          176 FGERGKYLISGGND-KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       176 ~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                        .++.++.+-... +.|..+++....         ........-...+.+++.|.++.+.++-...+.|..+++
T Consensus       169 --~~g~ly~td~~~~~~I~r~~~dG~~---------~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~  232 (349)
T 3v64_C          169 --MEGTIYWTDWGNTPRIEASSMDGSG---------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  232 (349)
T ss_dssp             --TTTEEEEEECSSSCEEEEEETTSCS---------CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             --CcCeEEEeccCCCCEEEEEeCCCCC---------cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence              245555555555 789998887632         111111223457889998745544444445677887775

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.80  E-value=0.0054  Score=51.50  Aligned_cols=91  Identities=10%  Similarity=0.082  Sum_probs=57.8

Q ss_pred             cEEEEcccc-eeee-eeccCCCCCeeeEEEcCCCCeEEEEecCC-----CeEEEEEccCCCCc--cceecCCCCCCCCCC
Q 025649            2 WQIIDIRQH-CLYK-SLRAGHSSICSSVQFIPWKPWEVISGGLD-----SKLVMWDFSKGRPN--KIVNFGLPENNGNAG   72 (250)
Q Consensus         2 i~iwd~~~~-~~~~-~l~~~h~~~v~~l~~~~~~~~~l~s~s~d-----g~v~iwd~~~~~~~--~~~~~~~~~~~~~~~   72 (250)
                      |+++|+.++ +.+. .+.    .....++|+||++ .|+....|     ..|.++++.+++..  ..+...         
T Consensus       203 l~v~dl~~g~~~l~~~~~----~~~~~~~WspDg~-~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~---------  268 (751)
T 2xe4_A          203 IEFKRISDPSQTIADKVS----GTNGEIVWGPDHT-SLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEH---------  268 (751)
T ss_dssp             EEEEETTCTTCCCCCCEE----EECSCCEECSSTT-EEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECC---------
T ss_pred             EEEEECCCCCEeCCcccc----CceeeEEEecCCC-EEEEEEECCCCCCCEEEEEECCCCchhcEEEEecC---------
Confidence            788898888 6332 122    1245789999998 45444443     35788888766432  222211         


Q ss_pred             cccCCCceeEEecCCCcccCCCCCEEEEEe---CCCeEEEEeCCCc
Q 025649           73 QCYNPAFVHAIAIPDADMLDKTNKICVVAK---GDGVVDVINIESE  115 (250)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~  115 (250)
                         .......+.|+|      ++++|+..+   ....|.++|+.++
T Consensus       269 ---~~~~~~~~~~Sp------Dg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          269 ---NPLFSAFMYKAA------DTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             ---CTTCEEEEEECT------TSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             ---CCceEEEEEECC------CCCEEEEEecCCCCceEEEEECCCC
Confidence               123456788998      999887765   3457888999875

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.76  E-value=0.00048  Score=55.80  Aligned_cols=81  Identities=9%  Similarity=-0.004  Sum_probs=55.5

Q ss_pred             CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec
Q 025649           42 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS  121 (250)
Q Consensus        42 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  121 (250)
                      .+|.|..||+.+++.+..+..+              ..+.+..+..      .+..+++++.|+.|+.+|.++++.+..+
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~--------------~~~~~~~~~t------~gg~v~~g~~dg~l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEK--------------FAAWGGTLYT------KGGLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES--------------SCCCSBCEEE------TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEecCC--------------CCccceeEEE------CCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence            3578999999999988777643              1122211111      4667778999999999999999998877


Q ss_pred             cCCCCCCccceeecccceeEE
Q 025649          122 KSTTKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~  142 (250)
                      ..........+.+..+|+.++
T Consensus       502 ~~~~~~~~~p~~~~~~G~~yv  522 (571)
T 2ad6_A          502 KMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             ECSSCCCSCCEEEEETTEEEE
T ss_pred             eCCCCcEeeeEEEEECCEEEE
Confidence            665433333445557777665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.75  E-value=0.0065  Score=45.23  Aligned_cols=171  Identities=6%  Similarity=-0.033  Sum_probs=89.9

Q ss_pred             CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCCc---eeEe
Q 025649           44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESE---LNIS  119 (250)
Q Consensus        44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~---~~~~  119 (250)
                      ..|+..|+.+.+....+.              ......+++|.+      .++ ++.+-..++.|..+++...   ....
T Consensus        10 ~~I~~i~~~~~~~~~~~~--------------~~~~p~g~~~d~------~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~   69 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIP--------------NLRNVVALDTEV------ASNRIYWSDLSQRMICSTQLDRAHGVSSYD   69 (316)
T ss_dssp             SSEEEEETTSCCCEEEEC--------------SCSSEEEEEEET------TTTEEEEEETTTTEEEEEEC--------CE
T ss_pred             CeEEEEECCCcceEehhc--------------CCCceEEEEEEe------CCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence            468888988766544433              134578899987      544 4455556789999998761   2111


Q ss_pred             eccCCCCCCccceeecccc-eeEEEe------eeeeeccCeeeeeeccccCccccEEEEEeecCCCC-CcEEEEeeCC-C
Q 025649          120 RSKSTTKPLKGSQSTSKVN-IRDAEM------EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER-GKYLISGGND-K  190 (250)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~~~l~s~~~d-~  190 (250)
                      ............+++++.+ ..+.+.      ...+.. ....+.+  +.........+++.   |. +.++.+.... +
T Consensus        70 ~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~--~~~~~~~P~~iavd---p~~g~ly~~d~~~~~  143 (316)
T 1ijq_A           70 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL--FRENGSKPRAIVVD---PVHGFMYWTDWGTPA  143 (316)
T ss_dssp             EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEE--EECTTCCEEEEEEE---TTTTEEEEEECSSSC
T ss_pred             EEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC-CCceEEE--EECCCCCcceEEeC---CCCCEEEEEccCCCC
Confidence            1111111345678888644 433321      111111 1111111  11122456889999   64 4444444333 7


Q ss_pred             eEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          191 LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       191 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .|...++....         ........-...+.+++.+.++.+.++-...+.|..+|+
T Consensus       144 ~I~~~~~dG~~---------~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~  193 (316)
T 1ijq_A          144 KIKKGGLNGVD---------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  193 (316)
T ss_dssp             EEEEEETTSCC---------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             eEEEEcCCCCC---------eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEec
Confidence            88888876531         111111223457889998744444444445678888875

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.73  E-value=0.00036  Score=56.63  Aligned_cols=81  Identities=10%  Similarity=0.016  Sum_probs=57.5

Q ss_pred             CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeecc
Q 025649           43 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK  122 (250)
Q Consensus        43 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  122 (250)
                      +|.|..||+.+++.+.....+              ..+..-....      .+.+++.++.|+.++.||.++++.+.+..
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~--------------~~~~~g~~~t------agglvf~g~~dg~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH--------------LPLWAGVLAT------AGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES--------------SCCCSCCEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceEEEEECCCCCEEEEecCC--------------CCCcccceEe------CCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence            688999999999988777643              1111111111      46778889999999999999999998877


Q ss_pred             CCCCCCccceeecccceeEEE
Q 025649          123 STTKPLKGSQSTSKVNIRDAE  143 (250)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~  143 (250)
                      ........-+.+..+|+.++.
T Consensus       525 ~~~g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          525 TGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             CSSCCCSCCEEEEETTEEEEE
T ss_pred             CCCCcccCceEEEECCEEEEE
Confidence            764334444677788876653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.70  E-value=0.014  Score=47.77  Aligned_cols=174  Identities=9%  Similarity=-0.037  Sum_probs=92.7

Q ss_pred             cEEEEcccce-eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCcc-ceecCCCCCCCCCCcccCCCc
Q 025649            2 WQIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK-IVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         2 i~iwd~~~~~-~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      |+..|+.... ....+. ..-.....|+|++.+..++++-...+.|..+++....... .+..+             -..
T Consensus        20 I~~i~~~~~~~~~~~~~-~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~-------------~~~   85 (619)
T 3s94_A           20 LRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-------------LLS   85 (619)
T ss_dssp             EEEECCC---------C-BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSS-------------CSC
T ss_pred             EEEEeCCCCcceEEEEE-cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCC-------------CCC
Confidence            5666665432 111122 2344577999998776456666667889888886543212 22211             235


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeE-EEeeeeeec------cC
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD-AEMEILDQS------GG  152 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~  152 (250)
                      ...+++.+     ..+++..+-...+.|.+.++.......... ..-.....++++|.+..+ .+.-.....      ++
T Consensus        86 P~GlAvD~-----~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG  159 (619)
T 3s94_A           86 PDGLACDW-----LGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG  159 (619)
T ss_dssp             EEEEEEET-----TTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             cCeEEEEe-----cCCEEEEEeCCCCEEEEEECCCCCEEEEEe-CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC
Confidence            67788876     134455555677899999998654332222 222457789999875444 432000000      11


Q ss_pred             eeeeeeccccCccccEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCC
Q 025649          153 KRLHLDYSVGGHTAAASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRF  200 (250)
Q Consensus       153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~  200 (250)
                      ...+.+  ....-.....++++   ++ +++..+-...+.|...|+...
T Consensus       160 ~~~~~l--~~~~~~~P~Glald---~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          160 SSRFII--INSEIYWPNGLTLD---YEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             CSCEEE--ECSSCSSEEEEEEE---TTTTEEEEEETTTCCEEEESSSCC
T ss_pred             CceEEE--EeCCCCCCcEEEEE---ccCCEEEEEeCCCCeEEEecCCCC
Confidence            111111  11123456889999   54 455555556778999998764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.67  E-value=0.019  Score=50.49  Aligned_cols=216  Identities=10%  Similarity=0.018  Sum_probs=112.0

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEE---EcCCCCeEEEEec----------CCCeEEEEEccCCCCccceecCCCCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQ---FIPWKPWEVISGG----------LDSKLVMWDFSKGRPNKIVNFGLPENN   68 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~---~~~~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~~~~   68 (250)
                      |++.|..+.+.+..+.-.....+.+++   |..+.+.+|+.|.          ..|.|.++++..++.....+..     
T Consensus       809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~-----  883 (1158)
T 3ei3_A          809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE-----  883 (1158)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE-----
T ss_pred             EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE-----
Confidence            678888888877666533444555555   3333333788775          3588999998744322222211     


Q ss_pred             CCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEe-eccCCCCCCccceeecccceeEEEeeee
Q 025649           69 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQSTSKVNIRDAEMEIL  147 (250)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (250)
                             .++.+++++--       +|+ |++|- .+.|++|++...+.+. .....  ..+..+.....+.+++ ++-.
T Consensus       884 -------v~g~v~al~~~-------~g~-Lla~i-g~~l~vy~l~~~~~L~~~~~~~--~~i~~~~l~~~~~~I~-vgD~  944 (1158)
T 3ei3_A          884 -------VKGAVYSMVEF-------NGK-LLASI-NSTVRLYEWTTEKELRTECNHY--NNIMALYLKTKGDFIL-VGDL  944 (1158)
T ss_dssp             -------ESSCEEEEEEE-------TTE-EEEEE-TTEEEEEEECTTSCEEEEEEEC--CCSCEEEEEEETTEEE-EEES
T ss_pred             -------cCCcCEEEeee-------CCE-EEEEc-CCEEEEEECCCCceEEEEeecc--ccEEEEEEeccCCEEE-EEEh
Confidence                   24567777644       464 44443 4789999998654333 11111  1122223323344444 1110


Q ss_pred             ee-------c-cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-
Q 025649          148 DQ-------S-GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-  218 (250)
Q Consensus       148 ~~-------~-~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-  218 (250)
                      -.       . ....+..+.. ..+..+++++.+-   .+ ..++.+..+|.+.+.......... .....+.....-| 
T Consensus       945 ~~Sv~~~~y~~~~~~L~~~a~-D~~~~~vta~~~l---d~-~t~l~aD~~gNl~vl~~~~~~~~~-~~~~~L~~~~~fhl 1018 (1158)
T 3ei3_A          945 MRSVLLLAYKPMEGNFEEIAR-DFNPNWMSAVEIL---DD-DNFLGAENAFNLFVCQKDSAATTD-EERQHLQEVGLFHL 1018 (1158)
T ss_dssp             SBCEEEEEEETTTTEEEEEEE-CCSCBCEEEEEEE---ET-TEEEEEETTSEEEEEEECTTCCST-TGGGBEEEEEEEEC
T ss_pred             hheEEEEEEEcCCCeEEEEEe-ecccccEEEEEEE---cc-CcEEEEcCCCcEEEEecCCCCCCc-cccceeeeEEEEeC
Confidence            00       0 1111211111 2345678899887   33 577778899999999876532111 1111222222223 


Q ss_pred             CCceeEEEe---cCCC--------CCeEEEeeCCceEEEE
Q 025649          219 NKKVNWLCT---TPTE--------SENLVVCDTSKVVKVY  247 (250)
Q Consensus       219 ~~~v~~~~~---~~~~--------~~~l~s~~~d~~i~vw  247 (250)
                      ...|+++.-   .+..        ...++-++.+|.|-+.
T Consensus      1019 G~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A         1019 GEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp             SSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEE
T ss_pred             CCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEE
Confidence            445666642   2211        2246777888888654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.66  E-value=0.02  Score=48.35  Aligned_cols=202  Identities=9%  Similarity=-0.037  Sum_probs=110.2

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  100 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  100 (250)
                      ...|.++...++|.  |..|+.+ -|.+||..+++.. .+....     ..........|.++...+      +|.+. .
T Consensus       262 ~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~~~-~~~~~~-----~~~~~l~~~~i~~i~~D~------~g~lW-i  325 (795)
T 4a2l_A          262 SNYIRSLAMDSQNR--LWIGTFN-DLNIYHEGTDSFA-SYSSNP-----VENGSLSQRSVRSIFMDS------QGGMW-L  325 (795)
T ss_dssp             CSBEEEEEECTTSC--EEEEESS-CEEEEETTTTEEE-EECCCT-----TSTTSCSSSCEEEEEECT------TSCEE-E
T ss_pred             CCeEEEEEEcCCCC--EEEEeCC-hhheEcCCCCeEE-EEecCC-----CCCCCCCCCcEEEEEEeC------CcCEE-E
Confidence            35699999998887  4445555 4888998765432 221110     000111235688888876      66644 5


Q ss_pred             EeCCCeEEEEeCCCceeEeeccC-----CCCCCccceeecccceeEEEe--eeeeeccCe--eeeeeccc------cCcc
Q 025649          101 AKGDGVVDVINIESELNISRSKS-----TTKPLKGSQSTSKVNIRDAEM--EILDQSGGK--RLHLDYSV------GGHT  165 (250)
Q Consensus       101 ~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~------~~h~  165 (250)
                      |+.++-|..|+..++........     -....+.++...++|...+..  +........  ..+....-      .-..
T Consensus       326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~  405 (795)
T 4a2l_A          326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGS  405 (795)
T ss_dssp             EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSC
T ss_pred             EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCC
Confidence            66667789998766543221111     112457788888887765521  112222211  11111100      0123


Q ss_pred             ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649          166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK  245 (250)
Q Consensus       166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  245 (250)
                      ..|.++...   ++|+.|..|+.++-|..||.+++........     ........|.++...+ ++.+ ..|+.+| +.
T Consensus       406 ~~v~~i~~d---~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~-----~~~l~~~~v~~i~~d~-~g~l-wigt~~G-l~  474 (795)
T 4a2l_A          406 NNIKAVYVD---EKKSLVYIGTHAGGLSILHRNSGQVENFNQR-----NSQLVNENVYAILPDG-EGNL-WLGTLSA-LV  474 (795)
T ss_dssp             SCEEEEEEE---TTTTEEEEEETTTEEEEEETTTCCEEEECTT-----TSCCSCSCEEEEEECS-SSCE-EEEESSC-EE
T ss_pred             ccEEEEEEc---CCCCEEEEEeCcCceeEEeCCCCcEEEeecC-----CCCcCCCeeEEEEECC-CCCE-EEEecCc-ee
Confidence            568999888   7887456677777899999887632210000     0001235688887765 5654 4444444 66


Q ss_pred             EEeC
Q 025649          246 VYSI  249 (250)
Q Consensus       246 vw~~  249 (250)
                      +||.
T Consensus       475 ~~~~  478 (795)
T 4a2l_A          475 RFNP  478 (795)
T ss_dssp             EEET
T ss_pred             EEeC
Confidence            6663

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.62  E-value=0.0019  Score=53.61  Aligned_cols=156  Identities=9%  Similarity=-0.082  Sum_probs=82.1

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  102 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  102 (250)
                      ....|++.+.+..++++-...+.|.+.++.... ...+...            .......+++.|      .+..|+.+.
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~~~------------~~~~P~giavDp------~~g~ly~td  514 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRE------------QGSKPRAIVVDP------VHGFMYWTD  514 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEECCC------------SSCCCCCEECCS------SSSCCEECC
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEEeC------------CCCCcceEEEcc------CCCcEEEcc
Confidence            356788886554366666667889999986433 2222111            012346778877      555454443


Q ss_pred             -CC-CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-------eeeeccCeeeeeeccccCccccEEEEEe
Q 025649          103 -GD-GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-------ILDQSGGKRLHLDYSVGGHTAAASCVAF  173 (250)
Q Consensus       103 -~d-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~h~~~v~~~~~  173 (250)
                       .. +.|..+++.......... ..-.....|+++|++..|..+.       ..+.. ....+.+............+++
T Consensus       515 ~~~~~~I~~~~~dG~~~~~l~~-~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d-G~~~~~~~~~~~~~~~P~glav  592 (699)
T 1n7d_A          515 WGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAV  592 (699)
T ss_dssp             CSSSCCEEBCCSSSCCCCEESC-SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS-SSCCEEECCCSSSCSSCCCCEE
T ss_pred             cCCCCeEEEEeCCCCCeeEEEe-CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC-CCceEEEEecCCcCCCceEeEE
Confidence             22 678888776433222111 1124567899998866554211       11111 1111111111111222345565


Q ss_pred             ecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649          174 SMFGERGKYLISGGNDKLVKVWDCSRFQGV  203 (250)
Q Consensus       174 ~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~  203 (250)
                      .   .+ .++++....+.|..+|..+++..
T Consensus       593 d---~~-~lywtd~~~~~V~~~d~~~G~~~  618 (699)
T 1n7d_A          593 F---ED-KVFWTDIINEAIFSANRLTGSDV  618 (699)
T ss_dssp             E---TT-EEEEECSTTTCEEEEETTTEEEE
T ss_pred             E---CC-EEEEEeCCCCeEEEEEccCCCce
Confidence            5   43 56666667789999998776443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.57  E-value=0.027  Score=47.56  Aligned_cols=194  Identities=12%  Similarity=-0.011  Sum_probs=108.9

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  100 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  100 (250)
                      ...|.++...+++. +|..|+.++-|..+|..+++.. .+....      ..  .....|.++...+      ++++.+.
T Consensus       405 ~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~~~~~-~~~~~~------~~--l~~~~v~~i~~d~------~g~lwig  468 (795)
T 4a2l_A          405 SNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNSGQVE-NFNQRN------SQ--LVNENVYAILPDG------EGNLWLG  468 (795)
T ss_dssp             CSCEEEEEEETTTT-EEEEEETTTEEEEEETTTCCEE-EECTTT------SC--CSCSCEEEEEECS------SSCEEEE
T ss_pred             CccEEEEEEcCCCC-EEEEEeCcCceeEEeCCCCcEE-EeecCC------CC--cCCCeeEEEEECC------CCCEEEE
Confidence            35788999888886 5788888778999998876532 222110      00  1245688888776      6765555


Q ss_pred             EeCCCeEEEEeCCCceeEeeccC-----CCCCCccceeecccceeEEEee----eeeeccCeeeeeec--c-ccCccccE
Q 025649          101 AKGDGVVDVINIESELNISRSKS-----TTKPLKGSQSTSKVNIRDAEME----ILDQSGGKRLHLDY--S-VGGHTAAA  168 (250)
Q Consensus       101 ~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~-~~~h~~~v  168 (250)
                      . . +-+.+||..+++.......     .....+.++...++|...+...    .++..... .....  . -......|
T Consensus       469 t-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~-~~~~~~~~~~~l~~~~i  545 (795)
T 4a2l_A          469 T-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLD-IQKASILPVSNVTKLFT  545 (795)
T ss_dssp             E-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEESSCEEEEEEETTE-EEECCCSCSCGGGGSCE
T ss_pred             e-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeCCceEEEeCCCCe-EEEecCCCCCCCCCCee
Confidence            4 4 4588999887655433211     1124577888888887665321    11111111 11000  0 01234578


Q ss_pred             EEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-CCceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649          169 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTSKVVKVY  247 (250)
Q Consensus       169 ~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~vw  247 (250)
                      .++...   ++|++.++.. . -|..||..+....       ......+. ...|.++...+ +|.+.+++ ..| |..|
T Consensus       546 ~~i~~d---~~g~lWigT~-~-Gl~~~d~~~~~~~-------~~~~~~gl~~~~i~~i~~d~-~g~lWi~t-~~G-l~~~  610 (795)
T 4a2l_A          546 NCIYEA---SNGIIWVGTR-E-GFYCFNEKDKQIK-------RYNTTNGLPNNVVYGILEDS-FGRLWLST-NRG-ISCF  610 (795)
T ss_dssp             EEEEEC---TTSCEEEEES-S-CEEEEETTTTEEE-------EECGGGTCSCSCEEEEEECT-TSCEEEEE-TTE-EEEE
T ss_pred             EEEEEC---CCCCEEEEeC-C-CceeECCCCCcEE-------EeCCCCCCchhheEEEEECC-CCCEEEEc-CCc-eEEE
Confidence            999988   7888666554 3 6888998775211       00001111 23577777664 66644443 344 4445


Q ss_pred             e
Q 025649          248 S  248 (250)
Q Consensus       248 ~  248 (250)
                      +
T Consensus       611 ~  611 (795)
T 4a2l_A          611 N  611 (795)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.57  E-value=0.015  Score=47.37  Aligned_cols=104  Identities=8%  Similarity=0.110  Sum_probs=64.6

Q ss_pred             cEEEEc-ccceeeeeeccCCCC-----------CeeeEEEcCCCCeE----EEEecCCCeEEEEEccCCCCccceecCCC
Q 025649            2 WQIIDI-RQHCLYKSLRAGHSS-----------ICSSVQFIPWKPWE----VISGGLDSKLVMWDFSKGRPNKIVNFGLP   65 (250)
Q Consensus         2 i~iwd~-~~~~~~~~l~~~h~~-----------~v~~l~~~~~~~~~----l~s~s~dg~v~iwd~~~~~~~~~~~~~~~   65 (250)
                      |.-+|. ++|+.+.++. ....           ....++++|.+. .    ++.++.|+.|..+|.++|+.+........
T Consensus        75 v~AlD~~~tG~~lW~~~-~~~~~~~~~~~~~~~~~~g~av~p~~g-~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~  152 (599)
T 1w6s_A           75 TFALGLDDPGTILWQDK-PKQNPAARAVACCDLVNRGLAYWPGDG-KTPALILKTQLDGNVAALNAETGETVWKVENSDI  152 (599)
T ss_dssp             EEEEETTCTTSEEEEEC-CCCCGGGGGGCSSCSCCCCCEEECCCS-SSCCEEEEECTTSEEEEEETTTCCEEEEEECCCG
T ss_pred             EEEEeCCCCCcEEEEEC-CCCCccccccccccccccceEEEecCC-cceeEEEEEcCCCEEEEEECCCCCEEEeecCCCC
Confidence            456788 7888887776 2211           012355644443 4    88888999999999999998887764310


Q ss_pred             CCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe------CCCeEEEEeCCCceeEeeccC
Q 025649           66 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK------GDGVVDVINIESELNISRSKS  123 (250)
Q Consensus        66 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~  123 (250)
                                  ..-..+.-+|...   ++ .+++++      .++.|+.+|.++++.+.....
T Consensus       153 ------------~~~~~~~ssP~v~---~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          153 ------------KVGSTLTIAPYVV---KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             ------------GGTCBCCSCCEEE---TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             ------------CccceeecCCEEE---CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence                        0001111122111   34 455554      379999999999998766554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.53  E-value=0.011  Score=46.16  Aligned_cols=149  Identities=5%  Similarity=-0.046  Sum_probs=83.7

Q ss_pred             eeEEecCCCcccCCC--CCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeee
Q 025649           80 VHAIAIPDADMLDKT--NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL  157 (250)
Q Consensus        80 v~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (250)
                      ...+++.|      +  ...|..+...+.|+.+|+.++.......  .......++++++|+++++. ............
T Consensus       141 P~gvavd~------~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--~~~~P~giavd~dG~lyVad-~~~~~~~~gv~~  211 (433)
T 4hw6_A          141 IWRMMFDP------NSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--NIGQCADVNFTLNGDMVVVD-DQSSDTNTGIYL  211 (433)
T ss_dssp             CCEEEECT------TTTTCEEEEECBTSCEEEEETTTTEEEEECC--CCSCEEEEEECTTCCEEEEE-CCSCTTSEEEEE
T ss_pred             CceEEEcc------ccCCCEEEEEeCCCCEEEEECCCCEEEEeec--CCCCccEEEECCCCCEEEEc-CCCCcccceEEE
Confidence            45677775      4  3445555444899999998776654433  23567889999999955432 111000000000


Q ss_pred             e---------ccccCccccEEEEEeecCCC-CCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEe
Q 025649          158 D---------YSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT  227 (250)
Q Consensus       158 ~---------~~~~~h~~~v~~~~~~p~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  227 (250)
                      +         ..+. .......++++   | +|.++++-..++.|+.+|..++....      .+. ..+.......+++
T Consensus       212 ~~~~~~~~~~~~~~-~~~~P~giavd---~~~G~lyv~d~~~~~V~~~d~~~g~~~~------~~~-~~~~~~~~~~ia~  280 (433)
T 4hw6_A          212 FTRASGFTERLSLC-NARGAKTCAVH---PQNGKIYYTRYHHAMISSYDPATGTLTE------EEV-MMDTKGSNFHIVW  280 (433)
T ss_dssp             ECGGGTTCCEEEEE-ECSSBCCCEEC---TTTCCEEECBTTCSEEEEECTTTCCEEE------EEE-ECSCCSSCEEEEE
T ss_pred             EECCCCeecccccc-ccCCCCEEEEe---CCCCeEEEEECCCCEEEEEECCCCeEEE------EEe-ccCCCCCcccEEE
Confidence            0         0010 11234567778   6 77777777678899999998653210      011 1111222346899


Q ss_pred             cCCCCCeEE-EeeCCceEEEEeC
Q 025649          228 TPTESENLV-VCDTSKVVKVYSI  249 (250)
Q Consensus       228 ~~~~~~~l~-s~~~d~~i~vw~~  249 (250)
                      +| +++.|+ +-...+.|+.+++
T Consensus       281 dp-dG~~LYvad~~~~~I~~~~~  302 (433)
T 4hw6_A          281 HP-TGDWAYIIYNGKHCIYRVDY  302 (433)
T ss_dssp             CT-TSSEEEEEETTTTEEEEEEB
T ss_pred             eC-CCCEEEEEeCCCCEEEEEeC
Confidence            97 777444 4445678888764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.44  E-value=0.021  Score=42.90  Aligned_cols=188  Identities=10%  Similarity=0.074  Sum_probs=105.3

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCC----CC---eEEEEecC--CCeEEEEEcc-CCCCccceecC-CCCCCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPW----KP---WEVISGGL--DSKLVMWDFS-KGRPNKIVNFG-LPENNGN   70 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~----~~---~~l~s~s~--dg~v~iwd~~-~~~~~~~~~~~-~~~~~~~   70 (250)
                      +.+||+ +|+.++.+. .  +.++.+..-|.    |+   ..+++.-.  +++|++|++. ....+..+... .+     
T Consensus        52 L~Vydl-~G~~l~~~~-~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~p-----  122 (355)
T 3amr_A           52 LVVYSL-DGKMLHSYN-T--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHP-----  122 (355)
T ss_dssp             EEEEET-TSCEEEEEC-C--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSC-----
T ss_pred             EEEEcC-CCcEEEEcc-C--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccC-----
Confidence            578999 899988887 4  55677776663    21   12344444  6899999774 12223333100 00     


Q ss_pred             CCcccCCCceeEEec--CCCcccCCCCC-EEEEEeCCCeEEEEeCCC---ceeEeeccCCCCCCccceeecccceeEEEe
Q 025649           71 AGQCYNPAFVHAIAI--PDADMLDKTNK-ICVVAKGDGVVDVINIES---ELNISRSKSTTKPLKGSQSTSKVNIRDAEM  144 (250)
Q Consensus        71 ~~~~~~~~~v~~~~~--~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (250)
                        .......++.+++  +|     ..++ ++++...+|.+..|++..   ++.                           
T Consensus       123 --v~t~~~~pyGlcly~~~-----~~g~~yafV~~k~G~~~q~~l~~~~~g~~---------------------------  168 (355)
T 3amr_A          123 --IATAINEVYGFTLYHSQ-----KTGKYYAMVTGKEGEFEQYELKADKNGYI---------------------------  168 (355)
T ss_dssp             --EECCCSSCCCEEEEECT-----TTCCEEEEEECSSSEEEEEEEEECTTSCE---------------------------
T ss_pred             --cCCCCCCeeEEEEEecC-----CCCcEEEEEECCCCeEEEEEEEeCCCCcc---------------------------
Confidence              0000144566666  55     2343 688888889999888842   211                           


Q ss_pred             eeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee-ec-cCCce
Q 025649          145 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-IN-LNKKV  222 (250)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~-~~~~v  222 (250)
                               ..+.++++.-. ..+..+...   +....|+.+-++..|..+|.+......    ..++... .+ ....+
T Consensus       169 ---------~~~lVR~f~lg-sq~EgcvvD---d~~g~Lyv~eEd~GIw~~da~p~~~~~----~~~v~~~~~g~l~aDv  231 (355)
T 3amr_A          169 ---------SGKKVRAFKMN-SQTEGMAAD---DEYGRLYIAEEDEAIWKFSAEPDGGSN----GTVIDRADGRHLTRDI  231 (355)
T ss_dssp             ---------EEEEEEEEECS-SCEEEEEEE---TTTTEEEEEETTTEEEEEECSTTSCSC----CEEEEEBSSSSBCSCE
T ss_pred             ---------cceEEEEecCC-CCcceEEEc---CCCCeEEEecccceEEEEeCCcCCCCC----ceEEEEecCCccccCc
Confidence                     12233344332 357788888   677788888888777777755321000    0222222 12 22357


Q ss_pred             eEEEecC-CCCC-eEEEee-CCceEEEEeC
Q 025649          223 NWLCTTP-TESE-NLVVCD-TSKVVKVYSI  249 (250)
Q Consensus       223 ~~~~~~~-~~~~-~l~s~~-~d~~i~vw~~  249 (250)
                      ..|+..+ .+++ +|++++ .++...+||.
T Consensus       232 EGLai~~~~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          232 EGLTIYYAADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             EEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             ceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence            7777642 2444 555555 6778999986

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.43  E-value=0.042  Score=46.35  Aligned_cols=155  Identities=12%  Similarity=0.001  Sum_probs=89.9

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEE
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  100 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  100 (250)
                      ...|.++...+++.  |..|+.++-|..+|..+++... +...          ......|.++...+      ++++.+ 
T Consensus       406 ~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~-~~~~----------~~~~~~v~~i~~d~------~g~lwi-  465 (781)
T 3v9f_A          406 SNSVLCSLKDSEGN--LWFGTYLGNISYYNTRLKKFQI-IELE----------KNELLDVRVFYEDK------NKKIWI-  465 (781)
T ss_dssp             CSBEEEEEECTTSC--EEEEETTEEEEEECSSSCEEEE-CCST----------TTCCCCEEEEEECT------TSEEEE-
T ss_pred             CcceEEEEECCCCC--EEEEeccCCEEEEcCCCCcEEE-eccC----------CCCCCeEEEEEECC------CCCEEE-
Confidence            46788999888886  5557766778889887664322 2100          01235688887775      665544 


Q ss_pred             EeCCCeEEEEeCCCceeEeeccCC----CCCCccceeecccceeEEEee--eeeeccC--eeeeeeccccC-ccccEEEE
Q 025649          101 AKGDGVVDVINIESELNISRSKST----TKPLKGSQSTSKVNIRDAEME--ILDQSGG--KRLHLDYSVGG-HTAAASCV  171 (250)
Q Consensus       101 ~~~d~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~-h~~~v~~~  171 (250)
                      |+. +-|..||..+++........    ....+.++...++|...+...  .....+.  ...+......+ ....|.++
T Consensus       466 gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i  544 (781)
T 3v9f_A          466 GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQI  544 (781)
T ss_dssp             EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEE
T ss_pred             EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEE
Confidence            444 56889998876543222111    124677788888887665321  1111111  11111111111 23568899


Q ss_pred             EeecCCCCCcEEEEeeCCCeEEEEecCCC
Q 025649          172 AFSMFGERGKYLISGGNDKLVKVWDCSRF  200 (250)
Q Consensus       172 ~~~p~~~~~~~l~s~~~d~~i~iwd~~~~  200 (250)
                      ...   ++|++.++.. +|.|..||..+.
T Consensus       545 ~~d---~~g~lWi~T~-~Glv~~~d~~~~  569 (781)
T 3v9f_A          545 YRS---SKGQMWLATG-EGLVCFPSARNF  569 (781)
T ss_dssp             EEC---TTSCEEEEET-TEEEEESCTTTC
T ss_pred             EEC---CCCCEEEEEC-CCceEEECCCCC
Confidence            888   7888666554 666588998775

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.43  E-value=0.02  Score=42.60  Aligned_cols=175  Identities=8%  Similarity=-0.050  Sum_probs=90.4

Q ss_pred             CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeecc
Q 025649           43 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK  122 (250)
Q Consensus        43 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  122 (250)
                      ...|+..++........+...            ......+++|.+     .++.+..+-...+.|..+++..+.......
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~------------~~~~~~~ld~d~-----~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~   74 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG------------GLEDAAAVDFVF-----SHGLIYWSDVSEEAIKRTEFNKTESVQNVV   74 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE------------EEEEEEEEEEEG-----GGTEEEEEETTTTEEEEEETTSSSCCCEEE
T ss_pred             cCeEEEEECCCCceEEEEEec------------CCCccEEEEEEe-----CCCEEEEEECCCCcEEEEEccCCCceEEEE
Confidence            467888998765322222111            123456788876     234455555677889999988753211111


Q ss_pred             CCCCCCccceeeccc-ceeEEEee------eeeeccCeeeeeeccccCccccEEEEEeecCCCC-CcEEEEee-CCCeEE
Q 025649          123 STTKPLKGSQSTSKV-NIRDAEME------ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER-GKYLISGG-NDKLVK  193 (250)
Q Consensus       123 ~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~~~l~s~~-~d~~i~  193 (250)
                      ...-.....+++.+. +..+.+..      ..+. .....+.+  +.........+++.   |. |.++.+-. ..+.|.
T Consensus        75 ~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~-dG~~~~~l--~~~~~~~P~giavd---p~~g~ly~td~~~~~~I~  148 (318)
T 3sov_A           75 VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL-DGSLRKVL--FWQELDQPRAIALD---PSSGFMYWTDWGEVPKIE  148 (318)
T ss_dssp             EECCSCCCEEEEETTTTEEEEEETTTTEEEEEET-TSCSCEEE--ECSSCSSEEEEEEE---GGGTEEEEEECSSSCEEE
T ss_pred             cCCCCCccEEEEEcCCCeEEEEECCCCEEEEEEC-CCCcEEEE--EeCCCCCccEEEEe---CCCCEEEEEecCCCCEEE
Confidence            111134567888864 44433211      1111 11111111  11233456889999   54 44444432 357888


Q ss_pred             EEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          194 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       194 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ..++....         ........-...+.+++.+.++.+.++=+..+.|..+|+
T Consensus       149 r~~~dG~~---------~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          149 RAGMDGSS---------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             EEETTSCS---------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEcCCCC---------eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence            88876531         111111222456889998744444444445677888775

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.37  E-value=0.019  Score=41.15  Aligned_cols=159  Identities=6%  Similarity=-0.031  Sum_probs=92.9

Q ss_pred             CceeEEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeeec
Q 025649           78 AFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQS  150 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  150 (250)
                      ..+..+++.|      +++ ++++...++.|...|+. ++....+..........+++.+++.++++.      -.....
T Consensus        27 ~~lSGla~~~------~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           27 NNISSLTWSA------QSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             SCEEEEEEET------TTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             cCcceeEEeC------CCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4688999998      554 55667789999999998 777666654434567778888888876531      111111


Q ss_pred             cCee---eeeec-cc--cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee----eeccCC
Q 025649          151 GGKR---LHLDY-SV--GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK----NINLNK  220 (250)
Q Consensus       151 ~~~~---~~~~~-~~--~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~  220 (250)
                      ....   ..... .+  .........++|+   |.++.|.++.+.....+|.+........   -..+..    ...+-.
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d---~~~~~L~va~E~~p~~i~~~~g~~~~~~---l~i~~~~~~~~~~~~~  173 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYS---RQDHTFWFFKEKNPIEVYKVNGLLSSNE---LHISKDKALQRQFTLD  173 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEE---TTTTEEEEEEESSSEEEEEEESTTCSSC---CEEEECHHHHHTCCSS
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEe---CCCCEEEEEECcCCceEEEEcccccCCc---eeeecchhhccccccC
Confidence            1111   11110 11  1234557899999   7776666666554455555541100000   011000    011233


Q ss_pred             ceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          221 KVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       221 ~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .+.++++.|..+.+++....++.+..+|.
T Consensus       174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~  202 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHESRALQEVTL  202 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             CceeEEEcCCCCeEEEEECCCCeEEEEcC
Confidence            57889999988887788888888887774

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.29  E-value=0.063  Score=45.30  Aligned_cols=153  Identities=7%  Similarity=-0.039  Sum_probs=78.5

Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee---EeeccCCCCCCccceeecccceeEEEee-------e
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN---ISRSKSTTKPLKGSQSTSKVNIRDAEME-------I  146 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  146 (250)
                      ...+.++++.+     .++.++++-...+.|+.+++.....   ...+..........|++.+.+..|..+.       .
T Consensus       423 ~~~~~gl~~d~-----~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v  497 (791)
T 3m0c_C          423 LRNVVALDTEV-----ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV  497 (791)
T ss_dssp             CSSEEEEEEET-----TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEeecc-----cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEE
Confidence            35567888876     2344555555678899898875311   1111121224566788887765444211       1


Q ss_pred             eeeccCeeeeeeccccCccccEEEEEeecCCCC-CcEEEEeeCC-CeEEEEecCCCcceecccccceeeeeeccCCceeE
Q 025649          147 LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER-GKYLISGGND-KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW  224 (250)
Q Consensus       147 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (250)
                      .+.. ....+.+  +.........|++.   |. |.++.+-... +.|...++....         ........-...+.
T Consensus       498 ~~ld-G~~~~~l--~~~~l~~P~gIaVD---p~~g~LYwtD~g~~~~I~~~~~dG~~---------~~~lv~~~l~~P~G  562 (791)
T 3m0c_C          498 ADTK-GVKRKTL--FRENGSKPRAIVVD---PVHGFMYWTDWGTPAKIKKGGLNGVD---------IYSLVTENIQWPNG  562 (791)
T ss_dssp             EETT-SSSEEEE--EECTTCCEEEEEEE---TTTTEEEEEECSSSCEEEEEETTSCC---------EEEEECSSCSCEEE
T ss_pred             EeCC-CCeEEEE--EeCCCCCcceEEEe---cCCCCEEEecCCCCCeEEEEecCCCc---------eEEEEeCCCCCceE
Confidence            1111 1111111  11223457899999   54 5555554333 788888887642         21122222346778


Q ss_pred             EEecCCCCCeEEEeeCCceEEEEeC
Q 025649          225 LCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       225 ~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      |++.+..+.++++=...+.|...++
T Consensus       563 LavD~~~~~LYwaD~~~~~I~~~d~  587 (791)
T 3m0c_C          563 ITLDLLSGRLYWVDSKLHSISSIDV  587 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEecCCCeEEEEeCCCCcEEEEec
Confidence            8888745544444344566777665

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.27  E-value=0.03  Score=41.18  Aligned_cols=181  Identities=18%  Similarity=0.140  Sum_probs=84.2

Q ss_pred             CCCeEEEEecCC-----CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC-
Q 025649           32 WKPWEVISGGLD-----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-  105 (250)
Q Consensus        32 ~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~-  105 (250)
                      ++. +++.|+.+     ..+.+||..+.+-...-...            .+..-++++..       ++++++.|+.++ 
T Consensus        61 ~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p------------~~r~~~~~~~~-------~~~iyv~GG~~~~  120 (302)
T 2xn4_A           61 AGL-VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR------------DRRSTLGAAVL-------NGLLYAVGGFDGS  120 (302)
T ss_dssp             TTE-EEEESCBCSSSBCCCEEEEETTTTEEEEECCCS------------SCCBSCEEEEE-------TTEEEEEEEECSS
T ss_pred             CCE-EEEEeCcCCCccccceEEECCCCCceeeCCCCC------------ccccceEEEEE-------CCEEEEEcCCCCC
Confidence            455 77777754     35788888765422111101            11111223322       567777777553 


Q ss_pred             ----eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccC-------------eeeeeeccccCccccE
Q 025649          106 ----VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG-------------KRLHLDYSVGGHTAAA  168 (250)
Q Consensus       106 ----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~h~~~v  168 (250)
                          .+.+||+.+.+.......+. .........-+++.++ .|..+....             ..-..+..+.......
T Consensus       121 ~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv-~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~  198 (302)
T 2xn4_A          121 TGLSSVEAYNIKSNEWFHVAPMNT-RRSSVGVGVVGGLLYA-VGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA  198 (302)
T ss_dssp             CEEEEEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEE-ECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred             ccCceEEEEeCCCCeEeecCCCCC-cccCceEEEECCEEEE-EeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc
Confidence                57889998876544322221 1222222223455444 444332210             0111111122111111


Q ss_pred             EEEEeecCCCCCcEEEEeeCC-----CeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCc-
Q 025649          169 SCVAFSMFGERGKYLISGGND-----KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK-  242 (250)
Q Consensus       169 ~~~~~~p~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-  242 (250)
                       ++...    ++.+++.|+.+     ..+.+||..+.......       .. .....-..++..  ++++++.|+.++ 
T Consensus       199 -~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-------~~-~~~r~~~~~~~~--~~~i~v~GG~~~~  263 (302)
T 2xn4_A          199 -GVGVL----NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA-------DM-NMCRRNAGVCAV--NGLLYVVGGDDGS  263 (302)
T ss_dssp             -EEEEE----TTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC-------CC-SSCCBSCEEEEE--TTEEEEECCBCSS
T ss_pred             -cEEEE----CCEEEEECCCCCCcccceEEEEeCCCCCEeeCC-------CC-CCccccCeEEEE--CCEEEEECCcCCC
Confidence             22222    56777787754     36889999876432211       00 011111122222  566777777653 


Q ss_pred             ----eEEEEeC
Q 025649          243 ----VVKVYSI  249 (250)
Q Consensus       243 ----~i~vw~~  249 (250)
                          .+.+||+
T Consensus       264 ~~~~~v~~yd~  274 (302)
T 2xn4_A          264 CNLASVEYYNP  274 (302)
T ss_dssp             SBCCCEEEEET
T ss_pred             cccccEEEEcC
Confidence                4778875

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.22  E-value=0.076  Score=44.78  Aligned_cols=204  Identities=10%  Similarity=-0.017  Sum_probs=105.7

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCC-CCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN-NGNAGQCYNPAFVHAIAIPDADMLDKTNKICV   99 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~   99 (250)
                      ...|.++...++|.  |..|+..+-|.++|..+++............ ............|.++...+      ++. |-
T Consensus       257 ~~~i~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~------~g~-lW  327 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK--LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS------FNN-IW  327 (781)
T ss_dssp             CCCEEEEEECTTSE--EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS------SCC-EE
T ss_pred             CceEEEEEECCCCC--EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC------CCC-EE
Confidence            35689999888885  5566664567888987654322111000000 00000112345688887775      665 44


Q ss_pred             EEeCCCeEEEEeCCCceeEeecc--------CCCCCCccceeecccceeEEEe--eeeeeccCeee--eeec-cccCccc
Q 025649          100 VAKGDGVVDVINIESELNISRSK--------STTKPLKGSQSTSKVNIRDAEM--EILDQSGGKRL--HLDY-SVGGHTA  166 (250)
Q Consensus       100 ~~~~d~~i~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~-~~~~h~~  166 (250)
                      .|+.++-|..++...+.......        .-....+.++...++|.+.+..  +..........  .... .-.....
T Consensus       328 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~  407 (781)
T 3v9f_A          328 IGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSN  407 (781)
T ss_dssp             EEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCS
T ss_pred             EEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCc
Confidence            56666778999887654332211        1122457788888877655522  11111111111  1110 0012345


Q ss_pred             cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee--eccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649          167 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN--INLNKKVNWLCTTPTESENLVVCDTSKVV  244 (250)
Q Consensus       167 ~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  244 (250)
                      .|.++...   ++|++.+ |+.++-|..+|.+++...         ...  ......|.++...+ ++. |..|... -|
T Consensus       408 ~v~~i~~d---~~g~lWi-gt~~~Gl~~~~~~~~~~~---------~~~~~~~~~~~v~~i~~d~-~g~-lwigt~~-Gl  471 (781)
T 3v9f_A          408 SVLCSLKD---SEGNLWF-GTYLGNISYYNTRLKKFQ---------IIELEKNELLDVRVFYEDK-NKK-IWIGTHA-GV  471 (781)
T ss_dssp             BEEEEEEC---TTSCEEE-EETTEEEEEECSSSCEEE---------ECCSTTTCCCCEEEEEECT-TSE-EEEEETT-EE
T ss_pred             ceEEEEEC---CCCCEEE-EeccCCEEEEcCCCCcEE---------EeccCCCCCCeEEEEEECC-CCC-EEEEECC-ce
Confidence            78899887   6777655 666677899998775221         111  11235677777664 554 4445544 46


Q ss_pred             EEEeC
Q 025649          245 KVYSI  249 (250)
Q Consensus       245 ~vw~~  249 (250)
                      ..||.
T Consensus       472 ~~~~~  476 (781)
T 3v9f_A          472 FVIDL  476 (781)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            66653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.13  E-value=0.043  Score=40.27  Aligned_cols=208  Identities=9%  Similarity=0.023  Sum_probs=95.7

Q ss_pred             cEEEEcccceee--eeeccCCCCCeeeEEEcCCCCeEEEEecCC-----CeEEEEEccCCC---CccceecCCCCCCCCC
Q 025649            2 WQIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGLD-----SKLVMWDFSKGR---PNKIVNFGLPENNGNA   71 (250)
Q Consensus         2 i~iwd~~~~~~~--~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d-----g~v~iwd~~~~~---~~~~~~~~~~~~~~~~   71 (250)
                      +.++|+.+++-.  ..+. ...... +++ .-++. +++.|+.+     ..+.+||+.+.+   -...-...        
T Consensus        33 ~~~~d~~~~~W~~~~~~p-~~r~~~-~~~-~~~~~-l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p--------  100 (301)
T 2vpj_A           33 VEKYDPKTQEWSFLPSIT-RKRRYV-ASV-SLHDR-IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN--------  100 (301)
T ss_dssp             EEEEETTTTEEEECCCCS-SCCBSC-EEE-EETTE-EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS--------
T ss_pred             EEEEcCCCCeEEeCCCCC-hhhccc-cEE-EECCE-EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC--------
Confidence            567787766532  2222 111111 222 22455 77777754     468889987765   22211101        


Q ss_pred             CcccCCCceeEEecCCCcccCCCCCEEEEEeCC-----CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee
Q 025649           72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI  146 (250)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (250)
                          .+..-++++..       ++++++.|+.+     ..+.+||+.+.+.......+. ..........+++.++ .|.
T Consensus       101 ----~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv-~GG  167 (301)
T 2vpj_A          101 ----VRRGLAGATTL-------GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT-AREGAGLVVASGVIYC-LGG  167 (301)
T ss_dssp             ----SCCBSCEEEEE-------TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-CCBSCEEEEETTEEEE-ECC
T ss_pred             ----CCccceeEEEE-------CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-CcccceEEEECCEEEE-ECC
Confidence                11111222222       56777777643     468899998866544322221 2222222233555554 443


Q ss_pred             eeecc-----------CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC-----CeEEEEecCCCcceecccccc
Q 025649          147 LDQSG-----------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-----KLVKVWDCSRFQGVQTSINND  210 (250)
Q Consensus       147 ~~~~~-----------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~  210 (250)
                      .+...           ...-+.+..+........++ .    -++++++.|+.+     ..+.+||+.+.......    
T Consensus       168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~----~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~----  238 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA-L----LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT----  238 (301)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-E----ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC----
T ss_pred             CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE-E----ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC----
Confidence            32211           00111111222111111222 2    246777777764     46899999886432211    


Q ss_pred             eeeeeeccCCceeEEEecCCCCCeEEEeeCC-----ceEEEEeC
Q 025649          211 LLIKNINLNKKVNWLCTTPTESENLVVCDTS-----KVVKVYSI  249 (250)
Q Consensus       211 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~vw~~  249 (250)
                         .. .....-.+++..  ++++++.|+.+     ..+.+||+
T Consensus       239 ---~~-p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          239 ---SM-TTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             ---CC-SSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred             ---CC-CCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence               00 111111122222  56677777765     45777775

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.99  E-value=0.065  Score=39.91  Aligned_cols=151  Identities=14%  Similarity=0.145  Sum_probs=85.8

Q ss_pred             cEEEEcccceeee-eeccC----CC--CCeeeEEE---cCCCCeEEEEec-------------CCCeEEEEEcc---CCC
Q 025649            2 WQIIDIRQHCLYK-SLRAG----HS--SICSSVQF---IPWKPWEVISGG-------------LDSKLVMWDFS---KGR   55 (250)
Q Consensus         2 i~iwd~~~~~~~~-~l~~~----h~--~~v~~l~~---~~~~~~~l~s~s-------------~dg~v~iwd~~---~~~   55 (250)
                      |..||...+.... .+. +    ..  ..+..|.|   .|+++ ++++..             .+..|..+|+.   +++
T Consensus        37 V~~~~~~~~~~~~~~~~-~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~  114 (334)
T 2p9w_A           37 IEVYNPKTQSHFNVVID-GASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSK  114 (334)
T ss_dssp             EEEECTTTCCEEEECCT-TTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCC
T ss_pred             EEEEcCCCCeEEEEecC-CccccCCCcceeeEEEEeccCCCCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCC
Confidence            5567776443322 233 2    11  14579999   68876 666433             26789999998   788


Q ss_pred             CccceecCCCCCCCCCCccc-CCCceeEEecCCCcccCCCCCEEEEEeCC-CeEEEEeCCCceeEeeccCCCCCCcccee
Q 025649           56 PNKIVNFGLPENNGNAGQCY-NPAFVHAIAIPDADMLDKTNKICVVAKGD-GVVDVINIESELNISRSKSTTKPLKGSQS  133 (250)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  133 (250)
                      .+....+.... .+...... .......+++.+      +|+..++++.. +.|...+.....                 
T Consensus       115 ~~~~~dL~~~~-~~~~~~~g~~~~~~nDvavD~------~GnaYVt~s~~~~~I~rV~pdG~~-----------------  170 (334)
T 2p9w_A          115 PVWSVNFEKVQ-DEFEKKAGKRPFGVVQSAQDR------DGNSYVAFALGMPAIARVSADGKT-----------------  170 (334)
T ss_dssp             CSEEEESHHHH-HHHHHHHSSCCEEEEEEEECT------TSCEEEEEEESSCEEEEECTTSCC-----------------
T ss_pred             EEEEecCcccc-ccccccccccccCCceeEECC------CCCEEEeCCCCCCeEEEEeCCCCE-----------------
Confidence            77665432000 00000000 012467788887      88888888877 776666555321                 


Q ss_pred             ecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC
Q 025649          134 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  199 (250)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~  199 (250)
                             +.   .+...        ..........+.+++.   |+|+.|+.....|.+.-+|++.
T Consensus       171 -------~~---~~~~~--------~~~~~~~~G~nGIv~~---pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          171 -------VS---TFAWE--------SGNGGQRPGYSGITFD---PHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             -------EE---EEEEC--------CCCSSSCCSCSEEEEE---TTTTEEEEESSSSSEEEEECSS
T ss_pred             -------Ee---eeeec--------CCCcccccCcceEEEe---CCCCEEEEEcCCCeEEEEcCCC
Confidence                   11   00000        0011122345678999   8888777776699999999885

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.90  E-value=0.073  Score=39.15  Aligned_cols=96  Identities=10%  Similarity=0.025  Sum_probs=50.7

Q ss_pred             cEEEEcccceee--eeeccCCCCCeeeEEEcCCCCeEEEEecCC----CeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649            2 WQIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGLD----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         2 i~iwd~~~~~~~--~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      +.+||..+++-.  ..+. .....-..+.  -++. +++.|+.+    ..+.+||+.+.+-...-...            
T Consensus        26 ~~~~d~~~~~W~~~~~~p-~~r~~~~~~~--~~~~-lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p------------   89 (306)
T 3ii7_A           26 CRYFNPKDYSWTDIRCPF-EKRRDAACVF--WDNV-VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP------------   89 (306)
T ss_dssp             EEEEETTTTEEEECCCCS-CCCBSCEEEE--ETTE-EEEECCBSSSBCCEEEEEETTTTEEEEEECCS------------
T ss_pred             EEEecCCCCCEecCCCCC-cccceeEEEE--ECCE-EEEEeCCCCCCcceEEEEeCCCCeEEECCCCC------------
Confidence            567888776532  2222 1122222222  2455 77777754    67888898776432221111            


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCC------CeEEEEeCCCceeEee
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGD------GVVDVINIESELNISR  120 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~  120 (250)
                      .+..-++++..       ++++++.|+.+      ..+.+||..+.+....
T Consensus        90 ~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~  133 (306)
T 3ii7_A           90 TPRDSLAACAA-------EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK  133 (306)
T ss_dssp             SCCBSCEEEEE-------TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred             ccccceeEEEE-------CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence            11111222222       56777777765      4688999998765443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.87  E-value=0.12  Score=41.01  Aligned_cols=159  Identities=9%  Similarity=-0.020  Sum_probs=85.0

Q ss_pred             ceeEEecCCCcccCC-CCCEEEEEeCCCeEEEEeCCCceeEeeccCCC--CCCccceee-------cccceeEEEeeeee
Q 025649           79 FVHAIAIPDADMLDK-TNKICVVAKGDGVVDVINIESELNISRSKSTT--KPLKGSQST-------SKVNIRDAEMEILD  148 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~  148 (250)
                      ....|++.|     . +++++++-...+.|++.|+..+..........  ......++|       +++|..++.....+
T Consensus       140 ~p~~la~dp-----~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~  214 (496)
T 3kya_A          140 DNGRLAFDP-----LNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD  214 (496)
T ss_dssp             SEEEEEEET-----TEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred             CCCEEEEcc-----CCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence            345677776     1 24444444445789999999877665443321  234778899       99998555222221


Q ss_pred             ec--cCeee---------eee-----ccccCccccEEEEEeecCCC-CCcEEEEeeCCCeEEEEecC-------CCccee
Q 025649          149 QS--GGKRL---------HLD-----YSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCS-------RFQGVQ  204 (250)
Q Consensus       149 ~~--~~~~~---------~~~-----~~~~~h~~~v~~~~~~p~~~-~~~~l~s~~~d~~i~iwd~~-------~~~~~~  204 (250)
                      ..  .....         ...     ..+.. ......++++   | ++.++++-..++.|..+|+.       ++..-.
T Consensus       215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavd---p~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t  290 (496)
T 3kya_A          215 GKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIH---PINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD  290 (496)
T ss_dssp             TTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEEC---TTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred             CCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEc---CCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence            00  00000         000     01111 1123566778   6 56667777778899999997       442100


Q ss_pred             ----cccc-cceeeeeeccCCceeEEEecCCCCCeEEEe-eCCceEEEEe
Q 025649          205 ----TSIN-NDLLIKNINLNKKVNWLCTTPTESENLVVC-DTSKVVKVYS  248 (250)
Q Consensus       205 ----~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~vw~  248 (250)
                          .... .+.+ ...+.......++++| +++.|+.+ .....|+.++
T Consensus       291 p~~~~~~g~~~~l-~~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid  338 (496)
T 3kya_A          291 PIVKNNPNTFKQL-FTIADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSD  338 (496)
T ss_dssp             CBGGGCTTTEEEE-EECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred             cccccccccccee-EecCCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEe
Confidence                0000 0011 1122334567899998 78755444 4567787755

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.82  E-value=0.11  Score=40.02  Aligned_cols=157  Identities=8%  Similarity=-0.091  Sum_probs=89.2

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      .....|++.+.+..+.++-...+.|.+.+++.......+...             ......+++.|      .+..|+..
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~-------------~~~P~~iavdp------~~g~ly~t  219 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN-------------GSKPRAIVVDP------VHGFMYWT  219 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECS-------------SCCEEEEEEET------TTTEEEEE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCC-------------CCCcceEEEec------ccCeEEEE
Confidence            456788898855536677777889999888644322222211             23457888887      55555555


Q ss_pred             e-C-CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe-------eeeeeccCeeeeeeccccCccccEEEEE
Q 025649          102 K-G-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM-------EILDQSGGKRLHLDYSVGGHTAAASCVA  172 (250)
Q Consensus       102 ~-~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~h~~~v~~~~  172 (250)
                      . . .+.|...++........... .-.....+++++++..|..+       ...+.. ....+.+............++
T Consensus       220 d~~~~~~I~~~~~dG~~~~~~~~~-~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~~~~~~l~~P~gl~  297 (400)
T 3p5b_L          220 DWGTPAKIKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLA  297 (400)
T ss_dssp             ECSSSCCEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCCEEEEECSSTTSSEEEEE
T ss_pred             eCCCCCEEEEEeCCCCccEEEEEC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC-CCccEEEEeCCCCCCCCEEEE
Confidence            4 2 47888888876433322221 12456789999876655522       111211 111111111112223445677


Q ss_pred             eecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649          173 FSMFGERGKYLISGGNDKLVKVWDCSRFQGV  203 (250)
Q Consensus       173 ~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~  203 (250)
                      +.    .+.++.+-...+.|..+|..++...
T Consensus       298 v~----~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          298 VF----EDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             EE----TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             Ee----CCEEEEecCCCCeEEEEEcCCCCce
Confidence            65    4466667677788999997776443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.60  E-value=0.17  Score=39.14  Aligned_cols=80  Identities=11%  Similarity=0.039  Sum_probs=56.8

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc------------cceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN------------KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM   90 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   90 (250)
                      .|..+..+|+|. +||..+ +..|.|-.+..+...            +.+..+.      . ....+..|..+.|+|...
T Consensus        67 ~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~------~-~~~~~s~I~qVlWHPl~~  137 (452)
T 3pbp_A           67 DTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE------E-EVGPKSSIKKVLFHPKSY  137 (452)
T ss_dssp             TTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG------C-C--CCCCEEEEEECTTBG
T ss_pred             ceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC------c-ccCCCCceeEEEeccccC
Confidence            688899999999 677665 458999888743211            1222220      0 011256799999999665


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCC
Q 025649           91 LDKTNKICVVAKGDGVVDVINIES  114 (250)
Q Consensus        91 ~~~~~~~l~~~~~d~~i~~~d~~~  114 (250)
                         .+..|++-..|+.|++||+..
T Consensus       138 ---~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          138 ---RDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             ---GGCEEEEEETTSCEEEEETTC
T ss_pred             ---CCCeEEEEecCCEEEEEEccc
Confidence               577899999999999999986

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.52  E-value=0.22  Score=39.51  Aligned_cols=122  Identities=10%  Similarity=0.074  Sum_probs=69.3

Q ss_pred             cEEEEcccceeeeeeccC--CCCCeeeEEE-------cCCCCeEEEEecCCC------eEEEEEccC-CCCc-----cce
Q 025649            2 WQIIDIRQHCLYKSLRAG--HSSICSSVQF-------IPWKPWEVISGGLDS------KLVMWDFSK-GRPN-----KIV   60 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~--h~~~v~~l~~-------~~~~~~~l~s~s~dg------~v~iwd~~~-~~~~-----~~~   60 (250)
                      |++.|++++.+...+..+  .......|+|       ++++..++++-..++      .|.+.+... +...     ..+
T Consensus       164 i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v  243 (496)
T 3kya_A          164 IQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI  243 (496)
T ss_dssp             EEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE
T ss_pred             EEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceee
Confidence            567787776665444411  2235789999       999984444443332      255555333 2221     111


Q ss_pred             ecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCC-------Ccee-----------E-eec
Q 025649           61 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE-------SELN-----------I-SRS  121 (250)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~-------~~~~-----------~-~~~  121 (250)
                      ..              -.....++++|     .++.++++-..++.|..+|+.       ++..           . ...
T Consensus       244 ~~--------------~~~p~giavdp-----~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~  304 (496)
T 3kya_A          244 AA--------------YKQCNGATIHP-----INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF  304 (496)
T ss_dssp             EE--------------ESCCCCEEECT-----TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE
T ss_pred             cc--------------CCCceEEEEcC-----CCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeE
Confidence            10              12335677777     245556666788899999997       4443           1 112


Q ss_pred             cCCCCCCccceeecccceeEE
Q 025649          122 KSTTKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~  142 (250)
                      ..........++++|+|+.+.
T Consensus       305 ~~~~~~~p~~ia~~p~G~~lY  325 (496)
T 3kya_A          305 TIADPSWEFQIFIHPTGKYAY  325 (496)
T ss_dssp             ECSSSSCCEEEEECTTSSEEE
T ss_pred             ecCCCCCceEEEEcCCCCEEE
Confidence            222234567899999998543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.48  E-value=0.16  Score=37.44  Aligned_cols=61  Identities=13%  Similarity=0.115  Sum_probs=33.0

Q ss_pred             CCcEEEEeeCC-----CeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC-----ceEEEEe
Q 025649          179 RGKYLISGGND-----KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS-----KVVKVYS  248 (250)
Q Consensus       179 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~vw~  248 (250)
                      ++++++.|+.+     ..+.+||+.+.......       .. .....-.+++..  ++++++.|+.+     ..+.+||
T Consensus       215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-------~~-p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd  284 (308)
T 1zgk_A          215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA-------PM-KHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYD  284 (308)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC-------CC-SSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEE
T ss_pred             CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC-------CC-CCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEc
Confidence            46777777654     46899999886433211       00 011111122232  56677777754     4567777


Q ss_pred             C
Q 025649          249 I  249 (250)
Q Consensus       249 ~  249 (250)
                      +
T Consensus       285 ~  285 (308)
T 1zgk_A          285 P  285 (308)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.47  E-value=0.17  Score=37.72  Aligned_cols=190  Identities=6%  Similarity=-0.063  Sum_probs=95.2

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      ..+..+.+.+++. .++.+. +|.|.. ....|+.-.....+            ....+..+.+.|      ++.+++++
T Consensus       122 ~~~~~i~~~~~~~-~~~~~~-~g~v~~-S~DgG~tW~~~~~~------------~~~~~~~~~~~~------~~~~~~~g  180 (327)
T 2xbg_A          122 GSPRLIKALGNGS-AEMITN-VGAIYR-TKDSGKNWQALVQE------------AIGVMRNLNRSP------SGEYVAVS  180 (327)
T ss_dssp             SCEEEEEEEETTE-EEEEET-TCCEEE-ESSTTSSEEEEECS------------CCCCEEEEEECT------TSCEEEEE
T ss_pred             CCeEEEEEECCCC-EEEEeC-CccEEE-EcCCCCCCEEeecC------------CCcceEEEEEcC------CCcEEEEE
Confidence            4567788777665 555554 554321 12224432233222            234678888887      77777776


Q ss_pred             eCCCeEEEEeC--CCceeEeeccCCCCCCccceeecccceeEEEee--eeeec--c-Ceeeeeeccc-cCccccEEEEEe
Q 025649          102 KGDGVVDVINI--ESELNISRSKSTTKPLKGSQSTSKVNIRDAEME--ILDQS--G-GKRLHLDYSV-GGHTAAASCVAF  173 (250)
Q Consensus       102 ~~d~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~-~~~~~~~~~~-~~h~~~v~~~~~  173 (250)
                      ...+..+-.|-  .+-+..   .......+..+.+.+++..++...  ..-..  + ...-+.+..- ..+...+.++.+
T Consensus       181 ~~G~~~~S~d~gG~tW~~~---~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~  257 (327)
T 2xbg_A          181 SRGSFYSTWEPGQTAWEPH---NRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY  257 (327)
T ss_dssp             TTSSEEEEECTTCSSCEEE---ECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred             CCCcEEEEeCCCCCceeEC---CCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence            55444444443  222222   122235677788888887665311  11111  1 1111111110 012235888999


Q ss_pred             ecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          174 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       174 ~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      .   +++.+++.+. ++.| ++....+..-      ..+.....+...++.+.+.+ ++ .++.++.+|.|.-++
T Consensus       258 ~---~~~~~~~~g~-~g~i-~~S~DgG~tW------~~~~~~~~~~~~~~~v~~~~-~~-~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          258 R---TPNEVWLAGG-AGAL-LCSQDGGQTW------QQDVDVKKVPSNFYKILFFS-PD-QGFILGQKGILLRYV  319 (327)
T ss_dssp             S---SSSCEEEEES-TTCE-EEESSTTSSC------EECGGGTTSSSCCCEEEEEE-TT-EEEEECSTTEEEEEC
T ss_pred             c---CCCEEEEEeC-CCeE-EEeCCCCccc------EEcCccCCCCCCeEEEEEEC-CC-ceEEEcCCceEEEEc
Confidence            8   6777777665 6666 3333333211      01000012335677888764 44 466667788876654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.22  E-value=0.4  Score=39.40  Aligned_cols=175  Identities=6%  Similarity=-0.050  Sum_probs=93.6

Q ss_pred             CCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec
Q 025649           42 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS  121 (250)
Q Consensus        42 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  121 (250)
                      ..+.|+..++.+......+...            .-....+++|.+     .++.+..+-..++.|..+++.........
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~------------~~~~~~~l~~d~-----~~~~lywtD~~~~~I~r~~~~g~~~~~v~   75 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLT------------GVKEASALDFDV-----TDNRIYWTDISLKTISRAFMNGSALEHVV   75 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCC------------SCSCEEEEEEET-----TTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             eCCcEEEEECCCCCcceEEEcC------------CCCceEEEEEEC-----CCCEEEEEECCCCeEEEEECCCCCcEEEE
Confidence            4568899998765433333222            124577889987     23444455557789999998764333222


Q ss_pred             cCCCCCCccceeecccceeEEEeee-------eeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEe-eCCCeEE
Q 025649          122 KSTTKPLKGSQSTSKVNIRDAEMEI-------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG-GNDKLVK  193 (250)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~-~~d~~i~  193 (250)
                      ... ......+++++.+..+.....       .+. .....+.+  +...-.....+++.|  ..|.++.+- +..+.|.
T Consensus        76 ~~g-~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~-dG~~~~~l--~~~~l~~P~~iavdp--~~G~lY~tD~g~~~~I~  149 (628)
T 4a0p_A           76 EFG-LDYPEGMAVDWLGKNLYWADTGTNRIEVSKL-DGQHRQVL--VWKDLDSPRALALDP--AEGFMYWTEWGGKPKID  149 (628)
T ss_dssp             CSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEET-TSTTCEEE--ECSSCCCEEEEEEET--TTTEEEEEECSSSCEEE
T ss_pred             eCC-CCCcceEEEEeCCCEEEEEECCCCEEEEEec-CCCcEEEE--EeCCCCCcccEEEcc--CCCeEEEeCCCCCCEEE
Confidence            221 134667888765444431111       111 01111111  112234568999993  355555554 2356888


Q ss_pred             EEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          194 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       194 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ..++....         . ..+...-...+.+++.+..+.+..+=...+.|...|+
T Consensus       150 r~~~dG~~---------~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          150 RAAMDGSE---------R-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             EEETTSCS---------C-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCc---------e-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            88876642         1 1122234567888888744443344345667777765

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.06  E-value=0.31  Score=36.65  Aligned_cols=152  Identities=13%  Similarity=0.183  Sum_probs=84.7

Q ss_pred             EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC---EEEEEeC---CCeEEE
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK---ICVVAKG---DGVVDV  109 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~l~~~~~---d~~i~~  109 (250)
                      +++.....+-|.+||+ +|+.+..+..               ..++.+..-|.--  ..++   ++++...   +++|++
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~---------------g~~nnVD~r~~~~--l~g~~~dla~as~R~~~~n~l~v  103 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT---------------GKLNNVDIRYDFP--LNGKKVDIAAASNRSEGKNTIEI  103 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC---------------SCEEEEEEEEEEE--ETTEEEEEEEEEECSTTCCEEEE
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC---------------CCcccEEEecccc--cCCceEeEEEEeCCCCCCCeEEE
Confidence            5666677789999999 7888888752               3566666665100  0222   3333333   588999


Q ss_pred             EeCC--CceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEe--ecCCCCCc-EEE
Q 025649          110 INIE--SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF--SMFGERGK-YLI  184 (250)
Q Consensus       110 ~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~p~~~~~~-~l~  184 (250)
                      |++.  ++. +..+....                                 ..+..-...+..+++  +|  ..+. +++
T Consensus       104 f~iDp~~~~-l~~i~~~~---------------------------------~pv~t~~~~pyGlcly~~~--~~g~~yaf  147 (355)
T 3amr_A          104 YAIDGKNGT-LQSMTDPD---------------------------------HPIATAINEVYGFTLYHSQ--KTGKYYAM  147 (355)
T ss_dssp             EEECTTTCC-EEECSCTT---------------------------------SCEECCCSSCCCEEEEECT--TTCCEEEE
T ss_pred             EEECCCCCc-eeeccccc---------------------------------cCcCCCCCCeeEEEEEecC--CCCcEEEE
Confidence            9774  322 11110000                                 000000133444555  52  2344 677


Q ss_pred             EeeCCCeEEEEecCC---CcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          185 SGGNDKLVKVWDCSR---FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       185 s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      ....+|.+..|++..   +...     .++++.+ ...+.+-.+...+ ....|+.+-.+.-|..++
T Consensus       148 V~~k~G~~~q~~l~~~~~g~~~-----~~lVR~f-~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~d  207 (355)
T 3amr_A          148 VTGKEGEFEQYELKADKNGYIS-----GKKVRAF-KMNSQTEGMAADD-EYGRLYIAEEDEAIWKFS  207 (355)
T ss_dssp             EECSSSEEEEEEEEECTTSCEE-----EEEEEEE-ECSSCEEEEEEET-TTTEEEEEETTTEEEEEE
T ss_pred             EECCCCeEEEEEEEeCCCCccc-----ceEEEEe-cCCCCcceEEEcC-CCCeEEEecccceEEEEe
Confidence            777889999998843   2111     1333333 3345677777776 455788888886655554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.95  E-value=0.54  Score=38.55  Aligned_cols=155  Identities=8%  Similarity=-0.045  Sum_probs=87.3

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      ..+.+|+|.+.+..++++-...+.|+.+++........+..+             -....++++.+     ..+++..+-
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~-------------~~~p~GlAvD~-----~~~~lY~tD  410 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQ-------------IAHPDGIAVDW-----VARNLYWTD  410 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-------------CSCCCEEEEET-----TTTEEEEEE
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECC-------------CCCcCceEEec-----ccCcEEEEe
Confidence            346789999865536666666788988888653332222211             12345667654     145555665


Q ss_pred             eCCCeEEEEeCCCceeEeeccCCCCCCccceeeccc-ceeEEEeeeeeec------cCeeeeeeccccCccccEEEEEee
Q 025649          102 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV-NIRDAEMEILDQS------GGKRLHLDYSVGGHTAAASCVAFS  174 (250)
Q Consensus       102 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~h~~~v~~~~~~  174 (250)
                      +..+.|.+.++......... ...-.....+++.|. |.++.+.-.....      ++.....+  ....-.....++++
T Consensus       411 ~~~~~I~v~~~~G~~~~~l~-~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l--~~~~l~~P~GlalD  487 (619)
T 3s94_A          411 TGTDRIEVTRLNGTMRKILI-SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVL--VNTSLGWPNGLALD  487 (619)
T ss_dssp             TTTTEEEEEETTSCSCEEEE-CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--ECSSCSCEEEEEEE
T ss_pred             CCCCcEEEEeCCCCeEEEEE-ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEE--EeCCCCCCeeeEEc
Confidence            67789999998865432222 222356788999986 5555432100000      11111111  12223467889998


Q ss_pred             cCCCCCc-EEEEeeCCCeEEEEecCCC
Q 025649          175 MFGERGK-YLISGGNDKLVKVWDCSRF  200 (250)
Q Consensus       175 p~~~~~~-~l~s~~~d~~i~iwd~~~~  200 (250)
                         +.+. +..+-+..+.|..+++...
T Consensus       488 ---~~~~~LY~aD~~~~~I~~~~~dG~  511 (619)
T 3s94_A          488 ---YDEGKIYWGDAKTDKIEVMNTDGT  511 (619)
T ss_dssp             ---TTTTEEEEEETTTTEEEEEESSSC
T ss_pred             ---ccCCEEEEEECCCCEEEEEecCCC
Confidence               5444 4444455678999988654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.67  E-value=0.42  Score=35.21  Aligned_cols=97  Identities=15%  Similarity=0.076  Sum_probs=48.9

Q ss_pred             cEEEEcccceeee-eeccCCCCCeeeEEEcCCCCeEEEEecC-----C------CeEEEEEccCCCCccceecCCCCCCC
Q 025649            2 WQIIDIRQHCLYK-SLRAGHSSICSSVQFIPWKPWEVISGGL-----D------SKLVMWDFSKGRPNKIVNFGLPENNG   69 (250)
Q Consensus         2 i~iwd~~~~~~~~-~l~~~h~~~v~~l~~~~~~~~~l~s~s~-----d------g~v~iwd~~~~~~~~~~~~~~~~~~~   69 (250)
                      +.+||+.+++-.. .+. ........-....++. +++.|+.     .      ..+..||..+.+-...-...      
T Consensus        15 ~~~yd~~~~~W~~~~~~-~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p------   86 (315)
T 4asc_A           15 AVAYDPAANECYCASLS-SQVPKNHVSLVTKENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLP------   86 (315)
T ss_dssp             EEEEETTTTEEEEEECC-CCSCSSEEEEECTTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBS------
T ss_pred             eEEECCCCCeEecCCCC-CCCCccceEEEEECCE-EEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCC------
Confidence            4678888776432 222 2222223333345666 6777763     1      12677888765432111100      


Q ss_pred             CCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC--------CeEEEEeCCCceeEe
Q 025649           70 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD--------GVVDVINIESELNIS  119 (250)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~  119 (250)
                            .+..-++++..       ++++++.|+.+        ..+.+||..+.+...
T Consensus        87 ------~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~  131 (315)
T 4asc_A           87 ------SPRCLFGLGEA-------LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE  131 (315)
T ss_dssp             ------SCEESCEEEEE-------TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE
T ss_pred             ------cchhceeEEEE-------CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE
Confidence                  11111222222       56777777642        468899998876543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.27  E-value=1.7  Score=39.43  Aligned_cols=198  Identities=9%  Similarity=-0.011  Sum_probs=105.8

Q ss_pred             EEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeE
Q 025649           28 QFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV  107 (250)
Q Consensus        28 ~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i  107 (250)
                      -.+|..+ .++--. ..++.|+|+++.+.++.+...              ..|.-=.|-       +.+.|+-.+ +..|
T Consensus        72 IMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~~--------------e~VvfWkWi-------s~~~l~lVT-~~aV  127 (1630)
T 1xi4_A           72 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTMT--------------DDVTFWKWI-------SLNTVALVT-DNAV  127 (1630)
T ss_pred             ccCCCcc-eEEEec-CCeEEEeehHHhhhhcccccC--------------CCceEEEec-------CCCeeEEEc-CCeE
Confidence            3678777 666554 679999999988877777633              344444444       334444443 4679


Q ss_pred             EEEeCCCceeEeeccCCC----CCCccceeecccceeEEEeeeeee--ccCeeee-------eeccccCccccEEEEEee
Q 025649          108 DVINIESELNISRSKSTT----KPLKGSQSTSKVNIRDAEMEILDQ--SGGKRLH-------LDYSVGGHTAAASCVAFS  174 (250)
Q Consensus       108 ~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~h~~~v~~~~~~  174 (250)
                      .-|++.....+......+    ...|..-..+++.+.++.+|....  ......+       .-+.+.||.+.-..+...
T Consensus       128 yHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~  207 (1630)
T 1xi4_A          128 YHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKME  207 (1630)
T ss_pred             EEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccC
Confidence            999997644333222211    245555667888888886665322  1211111       223455665544444332


Q ss_pred             cCCCCCcEEEEeeC---CCeEEEEecCCC---cceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          175 MFGERGKYLISGGN---DKLVKVWDCSRF---QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       175 p~~~~~~~l~s~~~---d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      ...+..+.++.+..   .+.+.|-++...   ..............-..-.....++..++..| .+..-..-|.|.+||
T Consensus       208 ~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d  286 (1630)
T 1xi4_A          208 GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYD  286 (1630)
T ss_pred             CCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEe
Confidence            11012233333322   268888887543   11100000011000011234456777777444 677788889999999


Q ss_pred             CC
Q 025649          249 IS  250 (250)
Q Consensus       249 ~~  250 (250)
                      ++
T Consensus       287 ~~  288 (1630)
T 1xi4_A          287 LE  288 (1630)
T ss_pred             cc
Confidence            74

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=95.25  E-value=1.1  Score=38.86  Aligned_cols=36  Identities=25%  Similarity=0.132  Sum_probs=30.1

Q ss_pred             ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee
Q 025649          166 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ  204 (250)
Q Consensus       166 ~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  204 (250)
                      ..+.+++..   ++..++++-+.|+++|+|++.+++++.
T Consensus       236 ~~~~~~~~~---~~~~~lftl~~D~~LRiWsl~t~~~v~  271 (950)
T 4gq2_M          236 NTIISMIFL---STYNVLVMLSLDYKLKVLDLSTNQCVE  271 (950)
T ss_dssp             TCEEEEEEE---TTTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred             ceEEEEeec---CCCcEEEEEECCCEEEEEECCCCCeEe
Confidence            356677777   778899999999999999999987654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.25  E-value=0.68  Score=34.88  Aligned_cols=112  Identities=9%  Similarity=-0.012  Sum_probs=65.0

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC---CC
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT---NK   96 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~   96 (250)
                      .-..-..|+|.|+|. ++++--..|.|++++..+++........       ............++++|      +   +.
T Consensus        30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~-------~v~~~g~~GllGia~~P------df~~~g   95 (347)
T 3das_A           30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVP-------GVSPSGEGGLLGIALSP------DYASDH   95 (347)
T ss_dssp             CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECT-------TCCCBTTBSEEEEEECT------THHHHC
T ss_pred             CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccC-------ceeecCCCCceeeEecc------ccccCC
Confidence            344567999999998 7777666899999987655432111100       00011235678899998      4   34


Q ss_pred             EEEEE---eCCCeEEEEeCCCc----------eeEe-eccCCCCCCccceeecccceeEEEee
Q 025649           97 ICVVA---KGDGVVDVINIESE----------LNIS-RSKSTTKPLKGSQSTSKVNIRDAEME  145 (250)
Q Consensus        97 ~l~~~---~~d~~i~~~d~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (250)
                      .|.+.   ..++.|.-|.+..+          +.+. .+.......-..+.|.|||.++++.+
T Consensus        96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A           96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            44433   24556666665541          1111 12222223456799999998887654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.23  E-value=0.49  Score=33.12  Aligned_cols=75  Identities=9%  Similarity=-0.056  Sum_probs=41.5

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      ..+++++|+|+|. +.+.  .+|.+.-.+..+.+...-+... . .....    --....++.|.|      ++.+.++ 
T Consensus        41 ~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s~-t-~IG~~----Gw~~F~a~~fD~------~G~LYav-  104 (236)
T 1tl2_A           41 SNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGRA-K-KIGNG----GWNQFQFLFFDP------NGYLYAV-  104 (236)
T ss_dssp             TTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHC-E-EEECS----CGGGCSEEEECT------TSCEEEE-
T ss_pred             ccceeEEECCCcc-EEEE--eCCeEEEECCCCCCcccccccc-c-Eeccc----ccccceEEEECC------CCCEEEe-
Confidence            4788999999987 4444  6777665555443322111100 0 00000    001125666776      8888777 


Q ss_pred             eCCCeEEEEeCC
Q 025649          102 KGDGVVDVINIE  113 (250)
Q Consensus       102 ~~d~~i~~~d~~  113 (250)
                       .||.|.-++..
T Consensus       105 -~dG~iyr~~pP  115 (236)
T 1tl2_A          105 -SKDKLYKASPP  115 (236)
T ss_dssp             -ETTEEEEESCC
T ss_pred             -CCCEEEEeCCC
Confidence             56988877754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.22  E-value=0.61  Score=35.23  Aligned_cols=106  Identities=9%  Similarity=-0.005  Sum_probs=61.0

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC---CCEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT---NKIC   98 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~l   98 (250)
                      .....|+|.|+|+ ++++ ..+|.|+++|. +++  ..+. ..+      ...........++++|      +   +..|
T Consensus        29 ~~P~~ia~~pdG~-l~V~-e~~g~I~~~d~-~G~--~~~~-~~~------v~~~g~~g~~gia~~p------df~~~g~l   90 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-YLVT-ERPGRLVLISP-SGK--KLVA-SFD------VANVGEAGLLGLALHP------EFPKKSWV   90 (354)
T ss_dssp             SCEEEEEEEETTE-EEEE-ETTTEEEEECS-SCE--EEEE-ECC------CCCSTTCSEEEEEECT------TTTTSCEE
T ss_pred             CCCeEEEEcCCCe-EEEE-eCCCEEEEEeC-CCc--eEee-ccc------eeecCCCceeeEEeCC------CCCcCCEE
Confidence            4567999999997 5555 55599998873 454  2221 000      0000124578899998      5   4455


Q ss_pred             EEEeC----C----CeEEEEeCCCc-------eeEee-ccCCCCCCccceeecccceeEEEee
Q 025649           99 VVAKG----D----GVVDVINIESE-------LNISR-SKSTTKPLKGSQSTSKVNIRDAEME  145 (250)
Q Consensus        99 ~~~~~----d----~~i~~~d~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  145 (250)
                      .++..    +    +.|..|+....       +.+.. +..........++|.|||.++++.+
T Consensus        91 yv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A           91 YLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            44433    3    67778877653       11111 2211123456799999998777543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.13  E-value=0.75  Score=34.76  Aligned_cols=198  Identities=15%  Similarity=0.101  Sum_probs=100.5

Q ss_pred             CCCeeeEEEcCCCCeEEEEec------------CCCeEEEEEccCCC-CccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649           21 SSICSSVQFIPWKPWEVISGG------------LDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD   87 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s------------~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   87 (250)
                      .....++...|+|. .+++++            .+|.|.++|+++.. ....+.....   .....   .-..+.+.+.+
T Consensus        49 ~~G~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~---~~~~~---~f~PhGi~~~~  121 (355)
T 3sre_A           49 DNGSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN---TLDIS---SFNPHGISTFI  121 (355)
T ss_dssp             CSCCCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECS---SCCGG---GCCEEEEEEEE
T ss_pred             CCCcceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCC---CCCcC---ceeeeeeEEEE
Confidence            34567888899875 455542            68999999987431 2223332100   00000   11345555533


Q ss_pred             CcccCCCCC-EEEEE-eC--CCeEEEEeCCCc--ee--EeeccCCCCCCccceeecccceeEEEeeeeeec---------
Q 025649           88 ADMLDKTNK-ICVVA-KG--DGVVDVINIESE--LN--ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS---------  150 (250)
Q Consensus        88 ~~~~~~~~~-~l~~~-~~--d~~i~~~d~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  150 (250)
                          +.++. +|+++ ..  +.+|.+|++..+  ..  ........-.....+.+.++|.++++...+-..         
T Consensus       122 ----d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~  197 (355)
T 3sre_A          122 ----DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH  197 (355)
T ss_dssp             ----CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHH
T ss_pred             ----CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhh
Confidence                11343 34444 33  567888776542  22  223333333567789999999877643222100         


Q ss_pred             -cCeeeeee-------ccccCccccEEEEEeecCCCCCcEEEEe-eCCCeEEEEecCCCcceecccccceeeeeeccCCc
Q 025649          151 -GGKRLHLD-------YSVGGHTAAASCVAFSMFGERGKYLISG-GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK  221 (250)
Q Consensus       151 -~~~~~~~~-------~~~~~h~~~v~~~~~~p~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  221 (250)
                       ........       ..+...-...+.++|+   |+++.|..+ +..+.|..||+.......      ....+ .....
T Consensus       198 ~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~s---pDg~~lYvadt~~~~I~~~~~~~~g~l~------~~~~~-~~~g~  267 (355)
T 3sre_A          198 LGLAWSFVTYYSPNDVRVVAEGFDFANGINIS---PDGKYVYIAELLAHKIHVYEKHANWTLT------PLRVL-SFDTL  267 (355)
T ss_dssp             TTCCCEEEEEECTTCCEEEEEEESSEEEEEEC---TTSSEEEEEEGGGTEEEEEEECTTSCEE------EEEEE-ECSSE
T ss_pred             ccCCccEEEEEECCeEEEeecCCcccCcceEC---CCCCEEEEEeCCCCeEEEEEECCCCcEe------cCEEE-eCCCC
Confidence             00001110       1111112345789999   898766655 457899999987421111      11111 22455


Q ss_pred             eeEEEecCCCCCeEEEee
Q 025649          222 VNWLCTTPTESENLVVCD  239 (250)
Q Consensus       222 v~~~~~~~~~~~~l~s~~  239 (250)
                      .-.+++.+.+|.+.+++.
T Consensus       268 PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          268 VDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEEEEECTTTCCEEEEEE
T ss_pred             CceEEEeCCCCcEEEEec
Confidence            667777652376666554

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.93  E-value=0.84  Score=34.25  Aligned_cols=12  Identities=25%  Similarity=0.238  Sum_probs=8.9

Q ss_pred             CeEEEEEccCCC
Q 025649           44 SKLVMWDFSKGR   55 (250)
Q Consensus        44 g~v~iwd~~~~~   55 (250)
                      ..+.+||+.+.+
T Consensus       168 ~~v~~yd~~~~~  179 (357)
T 2uvk_A          168 KFLLSFDPSTQQ  179 (357)
T ss_dssp             CEEEEEETTTTE
T ss_pred             ccEEEEeCCCCc
Confidence            478888887654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.87  E-value=1  Score=35.07  Aligned_cols=199  Identities=10%  Similarity=0.004  Sum_probs=110.5

Q ss_pred             eEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC
Q 025649           26 SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG  105 (250)
Q Consensus        26 ~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~  105 (250)
                      +.-.+|..+ .|+--. ..++.++|+++.+.++.+...              ..|.-=.|-       +.+.|+-.+ +.
T Consensus        70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~~--------------e~VvfWkWi-------s~~~l~lVT-~t  125 (494)
T 1bpo_A           70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTMT--------------DDVTFWKWI-------SLNTVALVT-DN  125 (494)
T ss_dssp             EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEECS--------------SCCCEEEEE-------ETTEEEEEC-SS
T ss_pred             eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceecC--------------CCceEEEec-------CCCeEEEEc-CC
Confidence            344688887 666654 679999999998888777643              334333343       345555543 46


Q ss_pred             eEEEEeCCCceeEeeccCC----CCCCccceeecccceeEEEeeeeeecc--Ceeee-------eeccccCccccEEEEE
Q 025649          106 VVDVINIESELNISRSKST----TKPLKGSQSTSKVNIRDAEMEILDQSG--GKRLH-------LDYSVGGHTAAASCVA  172 (250)
Q Consensus       106 ~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~h~~~v~~~~  172 (250)
                      .|+-|++.....+......    ....|..-..+++.+.++.+|......  ....+       .-+.++||...-..+.
T Consensus       126 aVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~  205 (494)
T 1bpo_A          126 AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFK  205 (494)
T ss_dssp             EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEE
T ss_pred             eeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEe
Confidence            7999999764333222211    124555566788899888766643321  11111       1235667766554444


Q ss_pred             eecCCCCCcEEEEeeC---CCeEEEEecCCCc-ceecccccceeeeee---ccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649          173 FSMFGERGKYLISGGN---DKLVKVWDCSRFQ-GVQTSINNDLLIKNI---NLNKKVNWLCTTPTESENLVVCDTSKVVK  245 (250)
Q Consensus       173 ~~p~~~~~~~l~s~~~---d~~i~iwd~~~~~-~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  245 (250)
                      ..-.....++++.+..   .+.+.|-++.... ...... .+....+.   .-.+-..++..++.. ..++.-..-|.|.
T Consensus       206 ~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~-kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~  283 (494)
T 1bpo_A          206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-KKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIH  283 (494)
T ss_dssp             CTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC-CEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEE
T ss_pred             cCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc-ceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEE
Confidence            3200011234444443   2788888885430 000000 01111111   223456678888744 4778888899999


Q ss_pred             EEeCC
Q 025649          246 VYSIS  250 (250)
Q Consensus       246 vw~~~  250 (250)
                      +||++
T Consensus       284 lyDle  288 (494)
T 1bpo_A          284 LYDLE  288 (494)
T ss_dssp             EEETT
T ss_pred             EEecc
Confidence            99974

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.82  E-value=0.87  Score=33.87  Aligned_cols=154  Identities=10%  Similarity=0.010  Sum_probs=82.5

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      ++...+..+.+.+++. +++.+...+..+-+|- .++.-..+...            ....+..+.+.+      ++..+
T Consensus       160 ~~~~~~~~~~~~~~~~-~~~~g~~G~~~~S~d~-gG~tW~~~~~~------------~~~~~~~~~~~~------~g~~~  219 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGE-YVAVSSRGSFYSTWEP-GQTAWEPHNRT------------TSRRLHNMGFTP------DGRLW  219 (327)
T ss_dssp             SCCCCEEEEEECTTSC-EEEEETTSSEEEEECT-TCSSCEEEECC------------SSSCEEEEEECT------TSCEE
T ss_pred             CCCcceEEEEEcCCCc-EEEEECCCcEEEEeCC-CCCceeECCCC------------CCCccceeEECC------CCCEE
Confidence            4456788999999887 6666654444444442 12322222212            245678888887      67655


Q ss_pred             EEEeCCCeEEEEeCCCceeEeeccCC---CCCCccceeecccceeEEEee---eeeecc-CeeeeeeccccCccccEEEE
Q 025649           99 VVAKGDGVVDVINIESELNISRSKST---TKPLKGSQSTSKVNIRDAEME---ILDQSG-GKRLHLDYSVGGHTAAASCV  171 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~h~~~v~~~  171 (250)
                      + ++.+|.+++.+...++.-.....+   ....+..+.+.+++..++...   .+...+ ...-+.+.........+.++
T Consensus       220 ~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v  298 (327)
T 2xbg_A          220 M-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKI  298 (327)
T ss_dssp             E-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEEEESSTTSSCEECGGGTTSSSCCCEE
T ss_pred             E-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEEEeCCCCcccEEcCccCCCCCCeEEE
Confidence            4 456788777654434433222222   123467788888777666311   111111 12222222111223457888


Q ss_pred             EeecCCCCCcEEEEeeCCCeEEEEec
Q 025649          172 AFSMFGERGKYLISGGNDKLVKVWDC  197 (250)
Q Consensus       172 ~~~p~~~~~~~l~s~~~d~~i~iwd~  197 (250)
                      .|.   ++++ ++.++.+|.|.-++-
T Consensus       299 ~~~---~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          299 LFF---SPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             EEE---ETTE-EEEECSTTEEEEECC
T ss_pred             EEE---CCCc-eEEEcCCceEEEEcC
Confidence            887   5555 555566888777664

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.55  E-value=0.98  Score=33.27  Aligned_cols=27  Identities=26%  Similarity=0.100  Sum_probs=18.5

Q ss_pred             CCCEEEEEeCC-------CeEEEEeCCCceeEee
Q 025649           94 TNKICVVAKGD-------GVVDVINIESELNISR  120 (250)
Q Consensus        94 ~~~~l~~~~~d-------~~i~~~d~~~~~~~~~  120 (250)
                      ++++++.|+.+       ..+.+||..+.+....
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~  142 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV  142 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC
Confidence            56777777754       3588899988765443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.46  E-value=1.1  Score=33.57  Aligned_cols=111  Identities=12%  Similarity=-0.024  Sum_probs=62.0

Q ss_pred             cEEEEcccceeeeeeccCC-CCCeeeEEE--cCCCCeEEEEe-cCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649            2 WQIIDIRQHCLYKSLRAGH-SSICSSVQF--IPWKPWEVISG-GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h-~~~v~~l~~--~~~~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      |.-.|.++|+.+.+++ .. ..++....-  .+.+...++.. +.||.|..++..+|.....+....        . ...
T Consensus        22 l~Ald~~tG~~~W~~~-~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~--------l-v~~   91 (339)
T 2be1_A           22 LHAVDRRNGHIIWSIE-PENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ--------L-VST   91 (339)
T ss_dssp             EEEEETTTTEEEEEEC-GGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH--------H-HTT
T ss_pred             EEEEECCCCcEEEEec-CCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc--------c-eec
Confidence            4556777899888887 32 122222110  01122244444 689999999998885444333210        0 000


Q ss_pred             CceeEEecCCCcccCC----CCCEEEEEeCCCeEEEEeCCCceeEeeccCC
Q 025649           78 AFVHAIAIPDADMLDK----TNKICVVAKGDGVVDVINIESELNISRSKST  124 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  124 (250)
                      .++.. .-.|+. .+.    .+..+++|+.+|.+...|+++|+.+......
T Consensus        92 SP~~~-~~~pvv-~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           92 SPLHL-KTNIVV-NDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             CSEEE-ECC-----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             ccccc-CCCcee-ecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            11111 111100 000    4668899999999999999999998876654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.41  E-value=1.2  Score=33.61  Aligned_cols=106  Identities=9%  Similarity=0.024  Sum_probs=61.1

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC---CCEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT---NKIC   98 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~l   98 (250)
                      ..-..++|.|+|+ ++++ ..+|.|++++  +++. ..+. ..+      ...........++++|      +   +..|
T Consensus        31 ~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~-~~~~-~~~------v~~~g~~~p~gia~~p------df~~~g~l   92 (352)
T 2ism_A           31 EVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRL-STYA-ELS------VYHRGESGLLGLALHP------RFPQEPYV   92 (352)
T ss_dssp             SCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEE-EEEE-ECC------CCCSTTCSEEEEEECT------TTTTSCEE
T ss_pred             CCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCc-cEee-cce------EeecCCCCceeEEECC------CCCCCCEE
Confidence            3457999999998 5555 4569999998  3432 1111 000      0000134578899998      6   4555


Q ss_pred             EEEeC-C-----CeEEEEeCCCce-----eEee-cc--CCCCCCccceeecccceeEEEee
Q 025649           99 VVAKG-D-----GVVDVINIESEL-----NISR-SK--STTKPLKGSQSTSKVNIRDAEME  145 (250)
Q Consensus        99 ~~~~~-d-----~~i~~~d~~~~~-----~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~  145 (250)
                      .++.. .     +.|..++...+.     .+.. +.  .........++|.|+|.++++.+
T Consensus        93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            54433 2     678888877531     1111 22  11123446899999997777543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.40  E-value=1.9  Score=35.95  Aligned_cols=66  Identities=14%  Similarity=0.207  Sum_probs=36.9

Q ss_pred             CCCeEEEEecCC------CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC
Q 025649           32 WKPWEVISGGLD------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG  105 (250)
Q Consensus        32 ~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~  105 (250)
                      ++. +++.|+.+      ..+.+||..+.+-...-...            .+..-++++...      ++++++.|+.++
T Consensus       451 ~~~-lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p------------~~R~~h~~~~~~------~~~iyv~GG~~~  511 (695)
T 2zwa_A          451 NNQ-LLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS------------HTRFRHSACSLP------DGNVLILGGVTE  511 (695)
T ss_dssp             TTE-EEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS------------BCCBSCEEEECT------TSCEEEECCBCS
T ss_pred             CCE-EEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC------------CCcccceEEEEc------CCEEEEECCCCC
Confidence            666 77777654      34778888764322111100            122223344322      678888887654


Q ss_pred             --eEEEEeCCCce
Q 025649          106 --VVDVINIESEL  116 (250)
Q Consensus       106 --~i~~~d~~~~~  116 (250)
                        .+.+||..+..
T Consensus       512 ~~~v~~yd~~t~~  524 (695)
T 2zwa_A          512 GPAMLLYNVTEEI  524 (695)
T ss_dssp             SCSEEEEETTTTE
T ss_pred             CCCEEEEECCCCc
Confidence              68888888654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.08  E-value=0.35  Score=38.84  Aligned_cols=74  Identities=12%  Similarity=-0.033  Sum_probs=51.7

Q ss_pred             CCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC------CC-------ccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649           21 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG------RP-------NKIVNFGLPENNGNAGQCYNPAFVHAIAIPD   87 (250)
Q Consensus        21 ~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~------~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   87 (250)
                      ......+.++|||+..+++|-.+.++.++|++..      +.       ....+.+              ..-...+|.+
T Consensus       322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G--------------lGPlHt~Fd~  387 (638)
T 3sbq_A          322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG--------------LGPLHTTFDG  387 (638)
T ss_dssp             SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC--------------SCEEEEEECS
T ss_pred             CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC--------------CcccEEEECC
Confidence            3455789999999977777788999999999742      11       1111111              2334567776


Q ss_pred             CcccCCCCCEEEEEeCCCeEEEEeCCC
Q 025649           88 ADMLDKTNKICVVAKGDGVVDVINIES  114 (250)
Q Consensus        88 ~~~~~~~~~~l~~~~~d~~i~~~d~~~  114 (250)
                            +|+...+..-|..|..|++..
T Consensus       388 ------~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          388 ------RGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             ------SSEEEEEETTTTEEEEEEHHH
T ss_pred             ------CCceEeeeeecceEEEEeccH
Confidence                  886666667899999999975

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.88  E-value=1.9  Score=33.90  Aligned_cols=112  Identities=6%  Similarity=-0.001  Sum_probs=62.5

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC---CCEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT---NKIC   98 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~l   98 (250)
                      .....|+|.|+|+ ++++-...+.|++++..+++......+..     .............++++|      +   +..|
T Consensus        27 ~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~-----~~~~~~g~~Gllgia~~P------df~~~g~l   94 (454)
T 1cru_A           27 NKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPE-----IVNDADGQNGLLGFAFHP------DFKNNPYI   94 (454)
T ss_dssp             SSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTT-----CCCCTTSSCSEEEEEECT------TTTTSCEE
T ss_pred             CCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCc-----cccccCCCCceeEEEECC------CcCcCCEE
Confidence            3557999999998 67765554578888765554322111110     000000134567899998      4   5555


Q ss_pred             EEEeC-------------CCeEEEEeCCCc-------eeEee-ccCCCCCCccceeecccceeEEEee
Q 025649           99 VVAKG-------------DGVVDVINIESE-------LNISR-SKSTTKPLKGSQSTSKVNIRDAEME  145 (250)
Q Consensus        99 ~~~~~-------------d~~i~~~d~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  145 (250)
                      .++..             ...|.-++...+       +.+.. +..........+.|.|||.++++.+
T Consensus        95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            55442             235666655321       11111 2222224567899999998887655

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.90  E-value=2  Score=31.34  Aligned_cols=171  Identities=9%  Similarity=-0.011  Sum_probs=79.3

Q ss_pred             cEEEEcccceee--eeeccCCCCCeeeEEEcCCCCeEEEEecCC------CeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649            2 WQIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGLD------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         2 i~iwd~~~~~~~--~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~   73 (250)
                      +.++|+.+++-.  ..+. .....-..+.+  ++. +++.|+.+      ..+.+||..+.+-...-...          
T Consensus        72 ~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p----------  137 (306)
T 3ii7_A           72 MDCYNVVKDSWYSKLGPP-TPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRTESWHTKPSML----------  137 (306)
T ss_dssp             EEEEETTTTEEEEEECCS-SCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS----------
T ss_pred             EEEEeCCCCeEEECCCCC-ccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc----------
Confidence            456787766532  2232 11112222222  455 67777755      45888898766432211101          


Q ss_pred             ccCCCceeEEecCCCcccCCCCCEEEEEeC---------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe
Q 025649           74 CYNPAFVHAIAIPDADMLDKTNKICVVAKG---------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM  144 (250)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (250)
                        .+..-++++..       ++++++.|+.         -..+.+||+.+.+.......+. .........-+++.++ .
T Consensus       138 --~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v-~  206 (306)
T 3ii7_A          138 --TQRCSHGMVEA-------NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFVKDKIFA-V  206 (306)
T ss_dssp             --SCCBSCEEEEE-------TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEE-E
T ss_pred             --CCcceeEEEEE-------CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEEECCEEEE-E
Confidence              11112222222       5677777753         3558899999876544332221 2222222223555554 4


Q ss_pred             eeeeecc-----------CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC-----CeEEEEecCCCcc
Q 025649          145 EILDQSG-----------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-----KLVKVWDCSRFQG  202 (250)
Q Consensus       145 ~~~~~~~-----------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d-----~~i~iwd~~~~~~  202 (250)
                      |..+...           ...-+.+..+........++.+     ++.+++.|+.+     ..+.+||..+.+.
T Consensus       207 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-----~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  275 (306)
T 3ii7_A          207 GGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-----GSIVYVLAGFQGVGRLGHILEYNTETDKW  275 (306)
T ss_dssp             CCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-----TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred             eCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-----CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence            4332210           0111111122211222222222     46777777744     4688899888643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.74  E-value=1  Score=33.75  Aligned_cols=68  Identities=18%  Similarity=0.129  Sum_probs=43.0

Q ss_pred             EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE-eCCCeEEEEeCCC
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIES  114 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~  114 (250)
                      +++.++.||.|.-.|..+|+.+..++..            ...++.... .+..  ..++..++.. +.||.|..++..+
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~------------~~~p~~~~~-~~~~--~~~~~~~vv~p~~dG~l~a~~~~~   76 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPE------------NFQPLIEIQ-EPSR--LETYETLIIEPFGDGNIYYFNAHQ   76 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGG------------GSCCSEECC-CSCT--TTSSEEEEECCSTTTEEEEEETTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCC------------ccCCcEEec-CCcc--ccCCcEEEEEECCCCEEEEEECCC
Confidence            7889999999999999999988888633            000111110 0100  0133444444 6899999999987


Q ss_pred             ceeE
Q 025649          115 ELNI  118 (250)
Q Consensus       115 ~~~~  118 (250)
                      |...
T Consensus        77 G~~~   80 (339)
T 2be1_A           77 GLQK   80 (339)
T ss_dssp             EEEE
T ss_pred             CcEE
Confidence            7543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=92.53  E-value=3.1  Score=32.59  Aligned_cols=180  Identities=10%  Similarity=0.110  Sum_probs=97.4

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +++|+|+++.+.++.+.  ....|..-.|-....  |+-.+ +..|.-|++.. ..+++.+..+.       .  .....
T Consensus        87 ~lQiFnle~K~klks~~--~~e~VvfWkWis~~~--l~lVT-~taVyHWsi~~~s~P~kvFdR~~-------~--L~~~Q  152 (494)
T 1bpo_A           87 TLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNT--VALVT-DNAVYHWSMEGESQPVKMFDRHS-------S--LAGCQ  152 (494)
T ss_dssp             EEEEEETTTTEEEEEEE--CSSCCCEEEEEETTE--EEEEC-SSEEEEEESSSSCCCEEEEECCG-------G--GTTCE
T ss_pred             eEEEEchHHhhhhccee--cCCCceEEEecCCCe--EEEEc-CCeeEEecccCCCCchhheecch-------h--cccce
Confidence            47899999988888887  455677777766553  44444 34899999974 34555665321       0  12356


Q ss_pred             eeEEecCCCcccCCCCCEEEEEe-------CCCeEEEEeCCCceeEeeccC---------C---CCCCccceeec-ccce
Q 025649           80 VHAIAIPDADMLDKTNKICVVAK-------GDGVVDVINIESELNISRSKS---------T---TKPLKGSQSTS-KVNI  139 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~---------~---~~~~~~~~~~~-~~~~  139 (250)
                      |.....++      +.++++..+       -.|.+.+|..+.+......-.         .   ....+.+.+.. +.|.
T Consensus       153 IInY~~d~------~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~  226 (494)
T 1bpo_A          153 IINYRTDA------KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  226 (494)
T ss_dssp             EEEEEECT------TSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCC
T ss_pred             EEEEEECC------CCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence            77777777      788776543       247788999886543221100         0   00111111111 1111


Q ss_pred             eEEEeeeeee-ccC-----eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcce
Q 025649          140 RDAEMEILDQ-SGG-----KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV  203 (250)
Q Consensus       140 ~~~~~~~~~~-~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~  203 (250)
                      .+-....... ...     +.......-..-.+-..++..+   +....+..-..-|.|.+||+.++.+.
T Consensus       227 kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs---~kygviyviTK~G~i~lyDleTgt~i  293 (494)
T 1bpo_A          227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS---EKHDVVFLITKYGYIHLYDLETGTCI  293 (494)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE---TTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEec---ccCCEEEEEecCceEEEEecccceee
Confidence            1110110000 000     0000001111223345677778   56667777778899999999999544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=92.16  E-value=6.1  Score=35.20  Aligned_cols=102  Identities=10%  Similarity=0.078  Sum_probs=60.5

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |++.+...++.+...+......|...+.+.  . .++.++ ++.+.++++..++.....+..            .+..|.
T Consensus       494 Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~-~vvva~-g~~l~~fel~~~~L~~~~~~~------------l~~evs  557 (1158)
T 3ei3_A          494 VRLVSQEPKALVSEWKEPQAKNISVASCNS--S-QVVVAV-GRALYYLQIHPQELRQISHTE------------MEHEVA  557 (1158)
T ss_dssp             EEEEESSSCCEEEEECCTTCCCCCEEEECS--S-EEEEEE-TTEEEEEEEETTEEEEEEEEE------------CSSCEE
T ss_pred             EEEEECCCCeEEEEEECCCCCEEEEEEeCC--C-EEEEEE-CCEEEEEEeeCCceeeecccC------------CCCceE
Confidence            566665544455555512233566666554  3 454444 578888888765322111111            245789


Q ss_pred             EEecCCCcccCCCCCEEEEEeC-CCeEEEEeCCCceeEe
Q 025649           82 AIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNIS  119 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~  119 (250)
                      |+++.|..--...+.++++|.. |++++++++...+...
T Consensus       558 cl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~  596 (1158)
T 3ei3_A          558 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH  596 (1158)
T ss_dssp             EEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             EEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE
Confidence            9999873111113579999996 9999999998755443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.96  E-value=3.1  Score=31.34  Aligned_cols=53  Identities=11%  Similarity=-0.044  Sum_probs=32.2

Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee--Eeec---cCCCCCCccceeeccc
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN--ISRS---KSTTKPLKGSQSTSKV  137 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~---~~~~~~~~~~~~~~~~  137 (250)
                      ....+++.|      +++.|+++...|.|++++......  ....   ..........++++|+
T Consensus        19 ~P~~i~~~p------dG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pd   76 (353)
T 2g8s_A           19 HPWALAFLP------DNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPD   76 (353)
T ss_dssp             SEEEEEECS------TTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred             CcEEEEEcC------CCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCC
Confidence            457889998      888344555779999998643211  1111   1111235578999995

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=91.77  E-value=7.6  Score=35.47  Aligned_cols=96  Identities=13%  Similarity=0.175  Sum_probs=59.8

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccC-CCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +++|+|+++.+.++.+.  ...+|..-.|-....  |+-.+ +..|.-|++.. ..+++.+..+..       .  ....
T Consensus        87 ~lQiFnl~~k~klks~~--~~e~VvfWkWis~~~--l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~-------L--~~~Q  152 (1630)
T 1xi4_A           87 TLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNT--VALVT-DNAVYHWSMEGESQPVKMFDRHSS-------L--AGCQ  152 (1630)
T ss_pred             eEEEeehHHhhhhcccc--cCCCceEEEecCCCe--eEEEc-CCeEEEeccCCCCccHHHHhcchh-------c--ccCe
Confidence            57889988887777776  455677777766554  43333 24799999964 345555542210       0  1345


Q ss_pred             eeEEecCCCcccCCCCCEEEEEe-------CCCeEEEEeCCCce
Q 025649           80 VHAIAIPDADMLDKTNKICVVAK-------GDGVVDVINIESEL  116 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~-------~d~~i~~~d~~~~~  116 (250)
                      |.+...++      +.++++..+       -.|.+.+|..+.+.
T Consensus       153 IinY~~d~------~~kW~~l~gi~~~~~~v~G~mQLyS~er~~  190 (1630)
T 1xi4_A          153 IINYRTDA------KQKWLLLTGISAQQNRVVGAMQLYSVDRKV  190 (1630)
T ss_pred             eEEeeeCC------CCCeEEEEeeccCCCcccceeeeeeccccc
Confidence            66666666      777665443       34788899887643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.73  E-value=2.8  Score=30.42  Aligned_cols=69  Identities=12%  Similarity=0.097  Sum_probs=38.3

Q ss_pred             CCCeEEEEecCC-----CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC--
Q 025649           32 WKPWEVISGGLD-----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD--  104 (250)
Q Consensus        32 ~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d--  104 (250)
                      ++. +++.|+.+     ..+.+||+.+.+-...-...            .+..-+++...       ++++++.|+.+  
T Consensus       112 ~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p------------~~r~~~~~~~~-------~~~iyv~GG~~~~  171 (301)
T 2vpj_A          112 GDM-IYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ------------TAREGAGLVVA-------SGVIYCLGGYDGL  171 (301)
T ss_dssp             TTE-EEEECCBCSSCBCCEEEEEETTTTEEEEEEECS------------SCCBSCEEEEE-------TTEEEEECCBCSS
T ss_pred             CCE-EEEEcccCCCcccceEEEEcCCCCeEEECCCCC------------CCcccceEEEE-------CCEEEEECCCCCC
Confidence            455 67777654     35888888765432221111            11111222222       56777777654  


Q ss_pred             ---CeEEEEeCCCceeEee
Q 025649          105 ---GVVDVINIESELNISR  120 (250)
Q Consensus       105 ---~~i~~~d~~~~~~~~~  120 (250)
                         ..+.+||+.+.+....
T Consensus       172 ~~~~~~~~~d~~~~~W~~~  190 (301)
T 2vpj_A          172 NILNSVEKYDPHTGHWTNV  190 (301)
T ss_dssp             CBCCCEEEEETTTTEEEEE
T ss_pred             cccceEEEEeCCCCcEEeC
Confidence               4688999988765543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=91.40  E-value=3.6  Score=31.01  Aligned_cols=68  Identities=18%  Similarity=0.146  Sum_probs=39.5

Q ss_pred             ccEEEEEeec---C-CCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649          166 AAASCVAFSM---F-GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD  239 (250)
Q Consensus       166 ~~v~~~~~~p---~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  239 (250)
                      .....++|..   | ..+|.++++.-..+.|...++.......     .....+.+-...+..+++.| ||.+.++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~-----~~~~~~~~~~~rp~~v~~~p-DG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVR-----KISTFFKNVFGRLRDVVIDD-DGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEE-----EEEEECTTTSCCEEEEEECT-TSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccc-----ceeeeccCCCCCeeEEEECC-CCcEEEEEe
Confidence            3467788731   0 0357777777777888888887532110     01111112245688999987 887665553

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.23  E-value=3.3  Score=30.26  Aligned_cols=27  Identities=15%  Similarity=0.067  Sum_probs=18.3

Q ss_pred             CCCEEEEEeC----C-----CeEEEEeCCCceeEee
Q 025649           94 TNKICVVAKG----D-----GVVDVINIESELNISR  120 (250)
Q Consensus        94 ~~~~l~~~~~----d-----~~i~~~d~~~~~~~~~  120 (250)
                      ++++++.|+.    +     ..+.+||+.+.+....
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~  105 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPC  105 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEEC
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeEC
Confidence            5677777765    2     4688999988765443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=90.55  E-value=3.8  Score=29.76  Aligned_cols=27  Identities=15%  Similarity=0.020  Sum_probs=18.8

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCceeEee
Q 025649           94 TNKICVVAKGD-----GVVDVINIESELNISR  120 (250)
Q Consensus        94 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~  120 (250)
                      ++++++.|+.+     ..+.+||..+.+....
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence            56777777754     3588999988765443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=88.68  E-value=6.3  Score=29.65  Aligned_cols=71  Identities=21%  Similarity=0.078  Sum_probs=41.3

Q ss_pred             cEEEEEeecC----CCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee-CC
Q 025649          167 AASCVAFSMF----GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TS  241 (250)
Q Consensus       167 ~v~~~~~~p~----~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d  241 (250)
                      .+..++|..-    ..+|.++++.-..+.|...++..+....      ....+......+..+++.| ||.+.++.. .+
T Consensus       272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~------~~~~~~~~~~rp~~v~~~p-dG~lyv~td~~~  344 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTE------DGRILTDRGQRIRDVRTGP-DGYLYVLTDESS  344 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE------EEEESGGGCCCEEEEEECT-TSCEEEEECSTT
T ss_pred             CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEee------eEEcccCCCCceeEEEECC-CCcEEEEEeCCC
Confidence            4677777510    0146777777777888888887542111      1111123345788999987 887655433 45


Q ss_pred             ceE
Q 025649          242 KVV  244 (250)
Q Consensus       242 ~~i  244 (250)
                      |.|
T Consensus       345 g~I  347 (353)
T 2g8s_A          345 GEL  347 (353)
T ss_dssp             EEE
T ss_pred             CEE
Confidence            644

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=88.26  E-value=12  Score=32.53  Aligned_cols=38  Identities=11%  Similarity=0.146  Sum_probs=30.7

Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS  121 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  121 (250)
                      ..+.+++..+      +..++++-+.|+++|+|++.++++....
T Consensus       236 ~~~~~~~~~~------~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          236 NTIISMIFLS------TYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TCEEEEEEET------TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeecC------CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            3456666665      7889999999999999999999877654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=86.99  E-value=8.1  Score=29.02  Aligned_cols=64  Identities=13%  Similarity=0.119  Sum_probs=37.1

Q ss_pred             cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe
Q 025649          167 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC  238 (250)
Q Consensus       167 ~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  238 (250)
                      ....++|.    +|.++++.-..+.|...++..........  .. ..+..-...+..+++.| ||.+.++.
T Consensus       269 ap~G~~~~----~G~l~v~~~~~~~v~~v~~~~~~~~~~~~--~~-~~~~~~~~rp~~v~~~p-dG~lyv~~  332 (352)
T 2ism_A          269 PPGNLAFF----RGDLYVAGLRGQALLRLVLEGERGRWRVL--RV-ETALSGFGRLREVQVGP-DGALYVTT  332 (352)
T ss_dssp             CEEEEEEE----TTEEEEEETTTTEEEEEEEEEETTEEEEE--EE-EEEEESSCCEEEEEECT-TSCEEEEE
T ss_pred             CCcceEEE----CCEEEEEECCCCEEEEEEECCCCcceeec--ch-heecccCCCeeEEEECC-CCcEEEEE
Confidence            45677775    56777776667788888776532100000  01 11112235788999997 88766554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=85.19  E-value=12  Score=29.43  Aligned_cols=30  Identities=0%  Similarity=-0.283  Sum_probs=21.9

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEcc
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFS   52 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~   52 (250)
                      .-..|+|.|++...|+.+...|.|++++..
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            446999999984224555678999999754

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=84.84  E-value=11  Score=31.63  Aligned_cols=37  Identities=16%  Similarity=0.193  Sum_probs=29.8

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF   62 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~   62 (250)
                      .|.++.+.  .. ++++-+.|+++|+|++++++++.....
T Consensus       223 ~Is~~~~~--~~-fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          223 VISCKLFH--ER-YLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             EEEEEEET--TT-EEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             eEEEeccC--Cc-EEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            45555543  45 899999999999999999998887765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=84.61  E-value=9.7  Score=27.80  Aligned_cols=96  Identities=14%  Similarity=0.027  Sum_probs=48.8

Q ss_pred             cEEEEccccee--eeeeccCCCCCeeeEEEcCCCCeEEEEecC-C-----CeEEEEEccCCCCccceecCCCCCCCCCCc
Q 025649            2 WQIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGL-D-----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         2 i~iwd~~~~~~--~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~-d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~   73 (250)
                      +.+||+.+++-  +..+. .....- +++. -+++ +++.|+. +     ..+.+||+.+.+-...-...          
T Consensus       119 ~~~~d~~~~~W~~~~~~p-~~r~~~-~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p----------  184 (315)
T 4asc_A          119 VMCYDRLSFKWGESDPLP-YVVYGH-TVLS-HMDL-VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ----------  184 (315)
T ss_dssp             EEEEETTTTEEEECCCCS-SCCBSC-EEEE-ETTE-EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS----------
T ss_pred             EEEECCCCCcEeECCCCC-Ccccce-eEEE-ECCE-EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC----------
Confidence            56778776543  22222 111111 2222 3455 6777765 2     46888888765422111101          


Q ss_pred             ccCCCceeEEecCCCcccCCCCCEEEEEeCCC-----eEEEEeCCCceeEee
Q 025649           74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-----VVDVINIESELNISR  120 (250)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~  120 (250)
                        .+..-++++..       ++++++.|+.++     .+.+||+.+.+....
T Consensus       185 --~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  227 (315)
T 4asc_A          185 --TARSLFGATVH-------DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF  227 (315)
T ss_dssp             --SCCBSCEEEEE-------TTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred             --CchhceEEEEE-------CCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence              11112223322       567778877654     588899988655443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=84.27  E-value=17  Score=30.45  Aligned_cols=190  Identities=9%  Similarity=-0.012  Sum_probs=93.0

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-----CCc---cceecCCCCCCCCCCcccCCCceeEEecCCCcccCC
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-----RPN---KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK   93 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (250)
                      ..|.++...+++.  |..|+..+-|.++|..+.     ...   ..+...         .......|.++...+      
T Consensus       419 ~~v~~i~~d~~g~--lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~i~~i~~d~------  481 (758)
T 3ott_A          419 NWTYYIFEDTAGQ--LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVH---------NGLSGMFINQIIPDN------  481 (758)
T ss_dssp             SSEEEEEECTTSE--EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGG---------GTCSCSCEEEEEECT------
T ss_pred             ceEEEEEEcCCCC--EEEEECCCceEEEccccccccCCcceecccccccc---------cccccceeeeEEEcC------
Confidence            4577888777775  666666666778886531     111   011100         001224578887776      


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeEeeccCCC--CCCccceeecccceeEEEe-eeeeeccCeeeeeeccc--cC-cccc
Q 025649           94 TNKICVVAKGDGVVDVINIESELNISRSKSTT--KPLKGSQSTSKVNIRDAEM-EILDQSGGKRLHLDYSV--GG-HTAA  167 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~-h~~~  167 (250)
                      ++++.+.++..+-|..+|..+++.........  ...+.++....+|...+.. +..........+ ...+  .+ ....
T Consensus       482 ~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~Gl~~~~~~~~~-~~~~~~~gl~~~~  560 (758)
T 3ott_A          482 EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFHGGVMRINPKDES-QQSISFGSFSNNE  560 (758)
T ss_dssp             TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEETTEEEEECC--CC-CCBCCCCC---CC
T ss_pred             CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEecCceEEEecCCCc-eEEecccCCCccc
Confidence            78777644444568889998766443321111  1345566667777665521 111111111111 1111  11 1245


Q ss_pred             EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEE
Q 025649          168 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV  246 (250)
Q Consensus       168 v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~v  246 (250)
                      |.++...    +|++.++. ..| |..+|..+....          .+.-....+....+...+|. |..|+.+|.+.+
T Consensus       561 i~~i~~~----~g~lWi~t-~~G-l~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~G~-l~fG~~~Gl~~f  622 (758)
T 3ott_A          561 ILSMTCV----KNSIWVST-TNG-LWIIDRKTMDAR----------QQNMTNKRFTSLLFDPKEDC-VYLGGADGFGIS  622 (758)
T ss_dssp             EEEEEEE----TTEEEEEE-SSC-EEEEETTTCCEE----------EC--CCCCCSEEEEETTTTE-EEEECBSEEEEE
T ss_pred             eEEEEEC----CCCEEEEC-CCC-eEEEcCCCceeE----------EecCCCCceeeeEEECCCCc-EEEecCCceEEE
Confidence            7777643    56655554 444 778888775221          11111122233444433564 677777775543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=84.25  E-value=8.7  Score=26.96  Aligned_cols=67  Identities=7%  Similarity=-0.096  Sum_probs=36.9

Q ss_pred             EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeecc-CCceeEEEecCCCCCeEEEeeCCceEE
Q 025649          168 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTSKVVK  245 (250)
Q Consensus       168 v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~  245 (250)
                      -.++.|.   ++|.+.++  .||.|+-++-.+.....-......   .... =..+..|.+.| +|.+.+..  |+.++
T Consensus        90 F~a~~fD---~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~---vg~~gw~~~~~lff~p-~G~Lyav~--dg~ly  157 (236)
T 1tl2_A           90 FQFLFFD---PNGYLYAV--SKDKLYKASPPQSDTDNWIARATE---VGSGGWSGFKFLFFHP-NGYLYAVH--GQQFY  157 (236)
T ss_dssp             CSEEEEC---TTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEE---EECSSGGGEEEEEECT-TSCEEEEE--TTEEE
T ss_pred             ceEEEEC---CCCCEEEe--CCCEEEEeCCCcCCCCceeccccE---eccCCCCceEEEEECC-CceEEEEe--CCcEE
Confidence            3577888   89988877  569998887644221110000011   1111 13467777776 78644444  77653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=82.64  E-value=16  Score=28.69  Aligned_cols=33  Identities=24%  Similarity=0.234  Sum_probs=22.7

Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCce
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  116 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  116 (250)
                      ....+|+|.|      +++++++-...+.|++++..++.
T Consensus        27 ~~P~~~a~~p------dG~l~V~e~~gg~I~~~~~~~g~   59 (454)
T 1cru_A           27 NKPHALLWGP------DNQIWLTERATGKILRVNPESGS   59 (454)
T ss_dssp             SSEEEEEECT------TSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCceEEEEcC------CCcEEEEEcCCCEEEEEECCCCc
Confidence            3457899998      88877765444578888765443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=81.42  E-value=13  Score=27.08  Aligned_cols=27  Identities=11%  Similarity=-0.082  Sum_probs=18.7

Q ss_pred             CCCEEEEEeC------CCeEEEEeCCCceeEee
Q 025649           94 TNKICVVAKG------DGVVDVINIESELNISR  120 (250)
Q Consensus        94 ~~~~l~~~~~------d~~i~~~d~~~~~~~~~  120 (250)
                      ++++++.|+.      -..+.+||+.+.+....
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~  190 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL  190 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC
Confidence            5777777764      24589999998765443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=81.41  E-value=7.6  Score=34.54  Aligned_cols=34  Identities=26%  Similarity=0.136  Sum_probs=27.5

Q ss_pred             EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCccee
Q 025649          168 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ  204 (250)
Q Consensus       168 v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  204 (250)
                      +.+++..   ++..++++-+.|+++|+|++.+++++.
T Consensus       240 ~vs~~~~---~~~~~lftL~~D~~LRiWsl~t~~~v~  273 (1139)
T 4fhn_B          240 IISMIFL---STYNVLVMLSLDYKLKVLDLSTNQCVE  273 (1139)
T ss_dssp             BSCCEEE---TTTTEEEEEBTTCEEEEEETTTTEEEE
T ss_pred             eEEeecc---CCccEEEEEeCCCEEEEEECCCCCeEE
Confidence            4445555   677899999999999999999987654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=81.15  E-value=21  Score=29.12  Aligned_cols=77  Identities=12%  Similarity=0.118  Sum_probs=49.8

Q ss_pred             EEEEeecCCCCCcEEEEee-CCCeEEEEecCCCcceec---ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceE
Q 025649          169 SCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQT---SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV  244 (250)
Q Consensus       169 ~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  244 (250)
                      ..+..+   |+|++++.++ .+.++.++|++.......   ......+.......-.....+|.+ +|....|---|..|
T Consensus       326 HGv~vs---PDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqv  401 (638)
T 3sbq_A          326 HGCNTS---SDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQV  401 (638)
T ss_dssp             CCEEEC---TTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred             cceeeC---CCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceE
Confidence            456667   8999888765 488999999986432110   011122222333455677888987 77555556689999


Q ss_pred             EEEeC
Q 025649          245 KVYSI  249 (250)
Q Consensus       245 ~vw~~  249 (250)
                      --|++
T Consensus       402 vkWni  406 (638)
T 3sbq_A          402 VKWNM  406 (638)
T ss_dssp             EEEEH
T ss_pred             EEEec
Confidence            99986

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=81.02  E-value=1.3  Score=39.34  Aligned_cols=39  Identities=21%  Similarity=0.216  Sum_probs=32.1

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF   62 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~   62 (250)
                      .+.+++..++.. ++++-+.|+++|+|++.+++++.+...
T Consensus       239 ~~vs~~~~~~~~-~lftL~~D~~LRiWsl~t~~~v~t~DL  277 (1139)
T 4fhn_B          239 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVETIEL  277 (1139)
T ss_dssp             CBSCCEEETTTT-EEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred             eeEEeeccCCcc-EEEEEeCCCEEEEEECCCCCeEEeech
Confidence            455666677777 899999999999999999998877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	250
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (109), Expect = 8e-07
 Identities = 22/202 (10%), Positives = 59/202 (29%), Gaps = 13/202 (6%)

Query: 1   MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKI 59
               +   Q         GH      V+        + S   D  + +W  +      ++
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRVWVVATKECKAEL 181

Query: 60  VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 119
                     +     + + +      +     K     +    D  + + ++ + + + 
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241

Query: 120 RSKSTTKPLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS 174
                   ++G    S          D  + + D    + +    ++  H    + + F 
Sbjct: 242 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---TLNAHEHFVTSLDFH 298

Query: 175 MFGERGKYLISGGNDKLVKVWD 196
              +   Y+++G  D+ VKVW+
Sbjct: 299 ---KTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 1e-04
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 159 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
           Y++ GH +  + V F         ++S   D  +KVWD       +T
Sbjct: 11  YALSGHRSPVTRVIFH---PVFSVMVSASEDATIKVWDYETGDFERT 54

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (87), Expect = 5e-04
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 140 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 199
           RD  +++ D S G  L    ++ GH      V F      GK+++S  +DK ++VWD   
Sbjct: 225 RDKTIKMWDVSTGMCLM---TLVGHDNWVRGVLFHS---GGKFILSCADDKTLRVWDYKN 278

Query: 200 FQGVQTSINNDLLIKNINLNKKVNWLCT 227
            + ++T   ++  + +++ +K   ++ T
Sbjct: 279 KRCMKTLNAHEHFVTSLDFHKTAPYVVT 306

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 141 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 196
           D    + D     R      + GH    SC+  +   + G  + +G  D  +K+W+
Sbjct: 291 DFNCNVWDALKADRAG---VLAGHDNRVSCLGVT---DDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 3/80 (3%)

Query: 147 LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS 206
           +D  G  ++    ++ GH A    + +       + L+S   D  + +WD      V   
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWG---TDSRLLVSASQDGKLIIWDSYTTNKVHAI 93

Query: 207 INNDLLIKNINLNKKVNWLC 226
                 +         N++ 
Sbjct: 94  PLRSSWVMTCAYAPSGNYVA 113

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 163 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
           GH  A + ++ S     GK L S   +  +  WD S     + 
Sbjct: 10  GHNKAITALSSS---ADGKTLFSADAEGHINSWDISTGISNRV 49

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (83), Expect = 0.001
 Identities = 7/59 (11%), Positives = 20/59 (33%), Gaps = 4/59 (6%)

Query: 140 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 198
            D  + + + +      +        ++ + V +         ++S G D  +K W+  
Sbjct: 244 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL----NETTIVSAGQDSNIKFWNVP 298

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 8/91 (8%)

Query: 163 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 222
            H A    V+         + +S   D  +KVWD            +     + +    V
Sbjct: 12  AHDADIFSVSAC-----NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 223 NWLCTTPTESEN---LVVCDTSKVVKVYSIS 250
           + L     ++     +     S  +  Y I+
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRIT 97

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 7e-04
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 140 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 199
            + E+ I ++SG K + + + +  H    + V ++        +++ G D+   VW    
Sbjct: 27  NNHEVHIYEKSGNKWVQV-HELKEHNGQVTGVDWA---PDSNRIVTCGTDRNAYVWTLKG 82

Query: 200 FQ 201
             
Sbjct: 83  RT 84

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 7/77 (9%), Positives = 17/77 (22%), Gaps = 9/77 (11%)

Query: 163 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 222
                 S +           L+    D  + V+             N  L++++     +
Sbjct: 9   APKDYISDIKII---PSKSLLLITSWDGSLTVYK------FDIQAKNVDLLQSLRYKHPL 59

Query: 223 NWLCTTPTESENLVVCD 239
                       + V  
Sbjct: 60  LCCNFIDNTDLQIYVGT 76

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 14/86 (16%)

Query: 164 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN 223
           H +    + F+     GK+ +S G D L+  W                 I     +  V 
Sbjct: 264 HESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYGA----------SIFQSKESSSVL 310

Query: 224 WLCTTPTESENLVVCDTSKVVKVYSI 249
               +    + +V     K   VY +
Sbjct: 311 SCDISVD-DKYIVTGSGDKKATVYEV 335

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 163 GHTAAA-SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
           GH     +C+ F      G  ++SG +D  +KVW     + ++T
Sbjct: 14  GHDDHVITCLQFC-----GNRIVSGSDDNTLKVWSAVTGKCLRT 52

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 163 GHTAAA-SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
           GH  +  +C+ F        Y+I+G +DK+++V+D    + +  
Sbjct: 10  GHMTSVITCLQFE-----DNYVITGADDKMIRVYDSINKKFLLQ 48

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 163 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 205
             +    C+ +       + ++SG  D  +K+WD +  +  + 
Sbjct: 13  ETSKGVYCLQYD-----DQKIVSGLRDNTIKIWDKNTLECKRI 50

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 5/34 (14%)

Query: 163 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 196
            H+     + F         ++S  +D  + +WD
Sbjct: 265 EHSGRVFRLQFD-----EFQIVSSSHDDTILIWD 293

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 32/249 (12%), Positives = 69/249 (27%), Gaps = 47/249 (18%)

Query: 1   MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIV 60
              +          SL        ++V   P     + +G LD  + +WD   G   + +
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243

Query: 61  NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR 120
           +       G+    Y+  F             +  +  V    D  V + N+++  N S 
Sbjct: 244 DSENESGTGHKDSVYSVVF------------TRDGQSVVSGSLDRSVKLWNLQNANNKSD 291

Query: 121 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG 180
           SK+                                  + +  GH      VA +   +  
Sbjct: 292 SKTPNSG----------------------------TCEVTYIGHKDFVLSVATT---QND 320

Query: 181 KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT 240
           +Y++SG  D+ V  WD      +     +   + ++ +    +                 
Sbjct: 321 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV----FATGSG 376

Query: 241 SKVVKVYSI 249
               +++  
Sbjct: 377 DCKARIWKY 385

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	250
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.8
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.76
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.73
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.71
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.66
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.66
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.66
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.6
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.56
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.52
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.5
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.48
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.35
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.33
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.33
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.17
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.1
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.07
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.04
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.95
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.92
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.81
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.79
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.75
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.74
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.71
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.71
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.54
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.43
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.42
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.39
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.22
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.05
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.03
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.02
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.75
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.32
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.15
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.77
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.73
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.5
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.34
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.18
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.17
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.11
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.96
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.7
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.68
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.45
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.07
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.03
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.94
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.65
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.53
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.28
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.2
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.69
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.44
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	89.55
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	87.96
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	86.66
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	86.54
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	85.82
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	84.59
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	84.22
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	84.08

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.8e-37  Score=228.76  Aligned_cols=223  Identities=13%  Similarity=0.124  Sum_probs=181.4

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |.+||+++++....+. +|.+.|++++|+|+|+ +|++|+.||+|++||+.+++........           .|...|.
T Consensus        40 v~i~~~~~~~~~~~~~-~H~~~v~~~~~sp~g~-~latg~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~  106 (311)
T d1nr0a1          40 VYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKTTIP-----------VFSGPVK  106 (311)
T ss_dssp             EEEEETTCSSCCEEEC-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEEEEE-----------CSSSCEE
T ss_pred             EEEEECCCCceeEEEc-CCCCCEEEEEEeCCCC-eEeccccCceEeeeeeeccccccccccc-----------cccCccc
Confidence            6899999999999999 9999999999999999 8999999999999999987755332211           1567899


Q ss_pred             EEecCCCcccCCCCCEEEEEeC--CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCeee
Q 025649           82 AIAIPDADMLDKTNKICVVAKG--DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRL  155 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  155 (250)
                      +++|+|      ++++|++++.  +..+++|++++++....+..+ ...+.+++|+|++++++..+..|.    ++.+..
T Consensus       107 ~v~~s~------d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h-~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~  179 (311)
T d1nr0a1         107 DISWDS------ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ-ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF  179 (311)
T ss_dssp             EEEECT------TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCC-SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred             cccccc------ccccccccccccccccccccccccccccccccc-ccccccccccccceeeeccccccccccccccccc
Confidence            999999      9999998875  466999999988877665544 467899999999987554444333    334555


Q ss_pred             eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE
Q 025649          156 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  235 (250)
Q Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (250)
                      +....+.+|...|.++.|+   |+++++++++.|+.|++||++++.........  .....+|...|++++|+| ++++|
T Consensus       180 ~~~~~~~~~~~~i~~v~~~---p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~--~~~~~~h~~~V~~~~~s~-~~~~l  253 (311)
T d1nr0a1         180 KFKSTFGEHTKFVHSVRYN---PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD--SLKNVAHSGSVFGLTWSP-DGTKI  253 (311)
T ss_dssp             EEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCCEEEECBCT--TSSSCSSSSCEEEEEECT-TSSEE
T ss_pred             ccccccccccccccccccC---cccccccccccccccccccccccccccccccc--ccccccccccccccccCC-CCCEE
Confidence            6677888999999999999   89999999999999999999987544321111  113457899999999998 88999


Q ss_pred             EEeeCCceEEEEeCC
Q 025649          236 VVCDTSKVVKVYSIS  250 (250)
Q Consensus       236 ~s~~~d~~i~vw~~~  250 (250)
                      ++|+.||.|+|||++
T Consensus       254 ~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         254 ASASADKTIKIWNVA  268 (311)
T ss_dssp             EEEETTSEEEEEETT
T ss_pred             EEEeCCCeEEEEECC
Confidence            999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.4e-36  Score=221.76  Aligned_cols=227  Identities=16%  Similarity=0.137  Sum_probs=161.9

Q ss_pred             ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCC--------C-------------
Q 025649           10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN--------N-------------   68 (250)
Q Consensus        10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~--------~-------------   68 (250)
                      |++.+.++ ||.+.|++|+|+|+++ +|+||+.||+|++||+++++.+..+.......        .             
T Consensus         2 g~~~~~~~-GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~   79 (299)
T d1nr0a2           2 GSIDQVRY-GHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLK   79 (299)
T ss_dssp             TEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEE
T ss_pred             CccceEcC-CCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEE
Confidence            57778888 9999999999999999 89999999999999999877665543221000        0             


Q ss_pred             -----------CCCCcccCCCceeEEecCCC-------------------------------cccCCCCCEEEEEeCCCe
Q 025649           69 -----------GNAGQCYNPAFVHAIAIPDA-------------------------------DMLDKTNKICVVAKGDGV  106 (250)
Q Consensus        69 -----------~~~~~~~~~~~v~~~~~~~~-------------------------------~~~~~~~~~l~~~~~d~~  106 (250)
                                 .......+...+.+++++|.                               ..+.++++++++++.|+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  159 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSK  159 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             EeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                       00000011122233333321                               011348889999999999


Q ss_pred             EEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCeeeeeeccccCccccEEEEEeecCCCCC
Q 025649          107 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG  180 (250)
Q Consensus       107 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  180 (250)
                      |++||+++++........+...+.+++|+|+++++++      +..++............+.+|...|++++|+   |++
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s---~~~  236 (299)
T d1nr0a2         160 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS---PDN  236 (299)
T ss_dssp             EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC---TTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccc
Confidence            9999998877655444444578999999999999884      2234444444445556778899999999999   899


Q ss_pred             cEEEEeeCCCeEEEEecCCCcceecccccceeeeeec-cCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          181 KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       181 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      ++|++|+.||.|++||++++...      .. ..... +...+..+.+.  ++++|++|+.|+.|++||++
T Consensus       237 ~~l~sgs~dg~i~iwd~~~~~~~------~~-~~~~~~~~~~v~~~~~~--~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         237 VRLATGSLDNSVIVWNMNKPSDH------PI-IIKGAHAMSSVNSVIWL--NETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             SEEEEEETTSCEEEEETTCTTSC------CE-EETTSSTTSCEEEEEEE--ETTEEEEEETTSCEEEEECC
T ss_pred             cceEEEcCCCEEEEEECCCCCcc------eE-EEecCCCCCcEEEEEEC--CCCEEEEEeCCCEEEEEecc
Confidence            99999999999999999986432      12 22233 34456666554  56789999999999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-35  Score=222.05  Aligned_cols=208  Identities=17%  Similarity=0.210  Sum_probs=165.3

Q ss_pred             ceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCC-
Q 025649           10 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA-   88 (250)
Q Consensus        10 ~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-   88 (250)
                      .+..++|+ ||.+.|++|+|+|+++ +|+||+.||+|++||+.+++.+..+..+             ...|.+++|+|. 
T Consensus        45 ~~~~~tL~-GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~~~~~-------------~~~v~~v~~~~~~  109 (340)
T d1tbga_          45 MRTRRTLR-GHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAIPLR-------------SSWVMTCAYAPSG  109 (340)
T ss_dssp             CCEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEEECS-------------CSCEEEEEECTTS
T ss_pred             eeeeEEEC-CCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEEEecc-------------cccEEeeEeeccc
Confidence            35667899 9999999999999999 9999999999999999998887777633             344555555441 


Q ss_pred             --------------------------------------------------------------------------------
Q 025649           89 --------------------------------------------------------------------------------   88 (250)
Q Consensus        89 --------------------------------------------------------------------------------   88 (250)
                                                                                                      
T Consensus       110 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (340)
T d1tbga_         110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS  189 (340)
T ss_dssp             SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             eeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEee
Confidence                                                                                            


Q ss_pred             cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee-------eccCeeeeeeccc
Q 025649           89 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-------QSGGKRLHLDYSV  161 (250)
Q Consensus        89 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  161 (250)
                      ....+.+.++++++.|+.|++||+++++....+..+ ...+.+++|+|+++++++ +..+       ....... .....
T Consensus       190 ~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h-~~~i~~v~~~p~~~~l~s-~s~d~~i~~~~~~~~~~~-~~~~~  266 (340)
T d1tbga_         190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH-ESDINAICFFPNGNAFAT-GSDDATCRLFDLRADQEL-MTYSH  266 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEE-EETTSCEEEEETTTTEEE-EEECC
T ss_pred             eccccccceeEEeecCceEEEEECCCCcEEEEEeCC-CCCeEEEEECCCCCEEEE-EeCCCeEEEEeecccccc-ccccc
Confidence            111335677888888888888888888777666543 478899999999999984 3322       2222222 12234


Q ss_pred             cCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCC
Q 025649          162 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS  241 (250)
Q Consensus       162 ~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  241 (250)
                      ..+...|.+++|+   |++++|++|+.||.|++||+.++         +++..+.+|..+|++++|+| ++++|++|+.|
T Consensus       267 ~~~~~~i~~~~~s---~~~~~l~~g~~dg~i~iwd~~~~---------~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~D  333 (340)
T d1tbga_         267 DNIICGITSVSFS---KSGRLLLAGYDDFNCNVWDALKA---------DRAGVLAGHDNRVSCLGVTD-DGMAVATGSWD  333 (340)
T ss_dssp             TTCCSCEEEEEEC---SSSCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECT-TSSCEEEEETT
T ss_pred             ccccCceEEEEEC---CCCCEEEEEECCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEeC-CCCEEEEEccC
Confidence            5667789999999   89999999999999999999987         67778889999999999998 89999999999


Q ss_pred             ceEEEEe
Q 025649          242 KVVKVYS  248 (250)
Q Consensus       242 ~~i~vw~  248 (250)
                      |.|+|||
T Consensus       334 g~v~iWd  340 (340)
T d1tbga_         334 SFLKIWN  340 (340)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4e-35  Score=217.58  Aligned_cols=222  Identities=17%  Similarity=0.152  Sum_probs=169.5

Q ss_pred             EEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCC----------------
Q 025649            4 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN----------------   67 (250)
Q Consensus         4 iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~----------------   67 (250)
                      .|-.. .....+|+ ||+++|++|+|+|+++ +|+||+.||+|++||+.+++.+..+..+....                
T Consensus         2 ~w~p~-~~~~~~L~-GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~   78 (317)
T d1vyhc1           2 EWIPR-PPEKYALS-GHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS   78 (317)
T ss_dssp             CCCCC-SSCSCEEE-CCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccCCC-CCccEEEc-CCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccc
Confidence            35443 34456899 9999999999999999 89999999999999999998888776321000                


Q ss_pred             -------------CCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceee
Q 025649           68 -------------NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST  134 (250)
Q Consensus        68 -------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  134 (250)
                                   ........+...+.++.++|      +++.+++++.|+.+++||+++++....+..+ ...+.++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  151 (317)
T d1vyhc1          79 ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP------NGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRMVRP  151 (317)
T ss_dssp             TTSCCCEEETTSSCEEECCCCCSSCEEEEEECS------SSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEE
T ss_pred             cccccccccccccccccccccccccceeeeccC------CCceEEeeccCcceeEeecccceeeeEEccC-CCcceeeec
Confidence                         00001111333445555555      8899999999999999999998877666544 367788889


Q ss_pred             cccceeEEEee------eeeecc---------------------------------------------------------
Q 025649          135 SKVNIRDAEME------ILDQSG---------------------------------------------------------  151 (250)
Q Consensus       135 ~~~~~~~~~~~------~~~~~~---------------------------------------------------------  151 (250)
                      +|++.++++.+      .++...                                                         
T Consensus       152 ~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  231 (317)
T d1vyhc1         152 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  231 (317)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             ccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEE
Confidence            99888887311      111110                                                         


Q ss_pred             --CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649          152 --GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       152 --~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                        ....+++..+.+|...|.+++|+   |++++|++|+.||.|++||++++         +++..+.+|.+.|++++|+|
T Consensus       232 ~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~h~~~V~~~~~s~  299 (317)
T d1vyhc1         232 WDVSTGMCLMTLVGHDNWVRGVLFH---SGGKFILSCADDKTLRVWDYKNK---------RCMKTLNAHEHFVTSLDFHK  299 (317)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEEC---SSSSCEEEEETTTEEEEECCTTS---------CCCEEEECCSSCEEEEEECS
T ss_pred             EECCCCcEEEEEeCCCCCEEEEEEC---CCCCEEEEEECCCeEEEEECCCC---------cEEEEEcCCCCCEEEEEEcC
Confidence              01123345667889999999999   89999999999999999999997         66678889999999999998


Q ss_pred             CCCCeEEEeeCCceEEEEe
Q 025649          230 TESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       230 ~~~~~l~s~~~d~~i~vw~  248 (250)
                       ++++|++|+.||+|+|||
T Consensus       300 -~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         300 -TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             -SSSCEEEEETTSEEEEEC
T ss_pred             -CCCEEEEEeCCCeEEEeC
Confidence             889999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.6e-33  Score=207.69  Aligned_cols=213  Identities=11%  Similarity=0.074  Sum_probs=166.3

Q ss_pred             CcEEEEcccceee--eeeccCCCCCeeeEEEcCCCCeEEEEecC--CCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            1 MWQIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGL--DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         1 ti~iwd~~~~~~~--~~l~~~h~~~v~~l~~~~~~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      +|+|||+.+++..  ..+. +|.++|.+++|+|+++ +|++++.  +..+++|++++++....+..             |
T Consensus        81 ~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~d~~-~l~~~~~~~~~~~~v~~~~~~~~~~~l~~-------------h  145 (311)
T d1nr0a1          81 NVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGTSNGNLTG-------------Q  145 (311)
T ss_dssp             EEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTCCBCBCCCC-------------C
T ss_pred             eEeeeeeeccccccccccc-cccCcccccccccccc-ccccccccccccccccccccccccccccc-------------c
Confidence            4899999877644  5577 9999999999999999 7888775  46699999999888777652             4


Q ss_pred             CCceeEEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe------eeeee
Q 025649           77 PAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQ  149 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  149 (250)
                      ...|.+++|+|      +++ .|++|+.|+.|++||+++++.......+ ...+.++.++|+++++++.      ..|+.
T Consensus       146 ~~~v~~v~~~~------~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~-~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~  218 (311)
T d1nr0a1         146 ARAMNSVDFKP------SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH-TKFVHSVRYNPDGSLFASTGGDGTIVLYNG  218 (311)
T ss_dssp             SSCEEEEEECS------SSSCEEEEEETTSCEEEEETTTBEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ccccccccccc------cceeeecccccccccccccccccccccccccc-cccccccccCcccccccccccccccccccc
Confidence            67899999998      776 5888999999999999998877766554 4789999999999999852      22333


Q ss_pred             ccCeeeeee----ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC---ce
Q 025649          150 SGGKRLHLD----YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK---KV  222 (250)
Q Consensus       150 ~~~~~~~~~----~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~v  222 (250)
                      ........+    ....+|...|++++|+   |++++|++|+.||.|+|||++++         +++..+..|..   .+
T Consensus       219 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s---~~~~~l~tgs~Dg~v~iwd~~t~---------~~~~~l~~~~~~~~~~  286 (311)
T d1nr0a1         219 VDGTKTGVFEDDSLKNVAHSGSVFGLTWS---PDGTKIASASADKTIKIWNVATL---------KVEKTIPVGTRIEDQQ  286 (311)
T ss_dssp             TTCCEEEECBCTTSSSCSSSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTT---------EEEEEEECCSSGGGCE
T ss_pred             ccccccccccccccccccccccccccccC---CCCCEEEEEeCCCeEEEEECCCC---------cEEEEEECCCCccceE
Confidence            332222111    2345789999999999   89999999999999999999998         45455554433   34


Q ss_pred             eEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          223 NWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       223 ~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .++.|   +++.|++++.||.|++||++
T Consensus       287 ~~~~~---~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         287 LGIIW---TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEE---CSSCEEEEETTCCEEEEETT
T ss_pred             EEEEe---cCCEEEEEECCCEEEEEeCC
Confidence            44555   44579999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-33  Score=215.45  Aligned_cols=215  Identities=13%  Similarity=0.076  Sum_probs=170.5

Q ss_pred             CcEEEEcccce--eeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~--~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|+|||+++++  .+..++ +|.++|.+|+|+|+++ +|++|+.|++|++||++++.....+...           .+..
T Consensus        30 ~i~iw~~~~~~~~~~~~l~-gH~~~V~~l~fsp~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~-----------~~~~   96 (371)
T d1k8kc_          30 EVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVIL-----------RINR   96 (371)
T ss_dssp             EEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTT-EEEEEETTSCEEEEEEETTEEEEEEECC-----------CCSS
T ss_pred             EEEEEECCCCCEEEEEEec-CCCCCEEEEEECCCCC-EEEEEECCCeEEEEeecccccccccccc-----------cccc
Confidence            48999998775  667788 9999999999999999 8999999999999999877654444322           1567


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeE---eeccCCCCCCccceeecccceeEEEe------eeeee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI---SRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQ  149 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  149 (250)
                      .|.+++|+|      +++.|++++.|+.+++|++......   ......+...+.+++|+|+++++++.      ..|+.
T Consensus        97 ~v~~i~~~p------~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~  170 (371)
T d1k8kc_          97 AARCVRWAP------NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA  170 (371)
T ss_dssp             CEEEEEECT------TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             ccccccccc------ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEee
Confidence            899999999      9999999999999999998764432   23334455789999999999999842      12333


Q ss_pred             ccC---------------eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 025649          150 SGG---------------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK  214 (250)
Q Consensus       150 ~~~---------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  214 (250)
                      ...               ...+.+....+|...|.+++|+   |++++|++++.|+.|++||++++         ..+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~s~~~d~~i~iwd~~~~---------~~~~~  238 (371)
T d1k8kc_         171 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS---ANGSRVAWVSHDSTVCLADADKK---------MAVAT  238 (371)
T ss_dssp             CCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC---SSSSEEEEEETTTEEEEEEGGGT---------TEEEE
T ss_pred             ccCccccccccccccccccceeeeeeccCccCcEEEEEee---cccccccccccCCcceEEeeecc---------cceee
Confidence            211               0122345667889999999999   89999999999999999999987         56677


Q ss_pred             eeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          215 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      +..|..+|.+++|+| ++++|++|+ |+.+++|.
T Consensus       239 ~~~~~~~v~s~~fs~-d~~~la~g~-d~~~~~~~  270 (371)
T d1k8kc_         239 LASETLPLLAVTFIT-ESSLVAAGH-DCFPVLFT  270 (371)
T ss_dssp             EECSSCCEEEEEEEE-TTEEEEEET-TSSCEEEE
T ss_pred             eecccccceeeeecC-CCCEEEEEc-CCceEEEE
Confidence            788999999999998 787766655 77777765

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=206.98  Aligned_cols=210  Identities=15%  Similarity=0.173  Sum_probs=173.1

Q ss_pred             CcEEEEcc--cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIR--QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~--~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|++||+.  +.+....+. +|...|.+++|+|++. ++++++.|+.|++|++.+++...... .            +..
T Consensus       120 ~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~~~~-~------------~~~  184 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQ-G------------HTD  184 (337)
T ss_dssp             EEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEEC-C------------CSS
T ss_pred             ccccccccccccccccccc-cccccccccccccccc-cccccccccccccccccccccccccc-c------------ccc
Confidence            48999987  446677788 9999999999999999 89999999999999999887766554 2            467


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----ccCee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKR  154 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  154 (250)
                      .+.+++|++      ++..+++++.|+.+++||+++++.+.....  ...+.+++|+|+++++++ +..+.    ++...
T Consensus       185 ~v~~l~~s~------~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~--~~~i~~l~~~~~~~~l~~-~~~d~~i~i~d~~~  255 (337)
T d1gxra_         185 GASCIDISN------DGTKLWTGGLDNTVRSWDLREGRQLQQHDF--TSQIFSLGYCPTGEWLAV-GMESSNVEVLHVNK  255 (337)
T ss_dssp             CEEEEEECT------TSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECTTSSEEEE-EETTSCEEEEETTS
T ss_pred             ccccccccc------cccccccccccccccccccccceeeccccc--ccceEEEEEcccccccce-eccccccccccccc
Confidence            899999998      999999999999999999999887766554  368899999999999984 32222    11121


Q ss_pred             eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe
Q 025649          155 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN  234 (250)
Q Consensus       155 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  234 (250)
                      .+ ......|...|.+++|+   |++++|++|+.||.|++||+.++         +.+ ....|...|.+++|+| ++++
T Consensus       256 ~~-~~~~~~~~~~i~~v~~s---~~g~~l~s~s~Dg~i~iwd~~~~---------~~~-~~~~~~~~v~~~~~s~-d~~~  320 (337)
T d1gxra_         256 PD-KYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYG---------ASI-FQSKESSSVLSCDISV-DDKY  320 (337)
T ss_dssp             SC-EEEECCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTC---------CEE-EEEECSSCEEEEEECT-TSCE
T ss_pred             cc-cccccccccccceEEEC---CCCCEEEEEeCCCeEEEEECCCC---------CEE-EEccCCCCEEEEEEeC-CCCE
Confidence            21 12456789999999999   89999999999999999999997         333 3356889999999998 8899


Q ss_pred             EEEeeCCceEEEEeC
Q 025649          235 LVVCDTSKVVKVYSI  249 (250)
Q Consensus       235 l~s~~~d~~i~vw~~  249 (250)
                      |++|+.||.|+|||+
T Consensus       321 l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         321 IVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEETTSCEEEEEE
T ss_pred             EEEEeCCCeEEEEEE
Confidence            999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-32  Score=202.90  Aligned_cols=212  Identities=16%  Similarity=0.156  Sum_probs=168.2

Q ss_pred             CcEEEEcccceeee-----eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCC--ccceecCCCCCCCCCCc
Q 025649            1 MWQIIDIRQHCLYK-----SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQ   73 (250)
Q Consensus         1 ti~iwd~~~~~~~~-----~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~   73 (250)
                      +|+|||+.+++...     ... +|.+.|.+++|+|+++ +|++|+.||+|++||+.....  ...+. .          
T Consensus        73 ~V~iWd~~~~~~~~~~~~~~~~-~h~~~I~~v~~s~dg~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~----------  139 (337)
T d1gxra_          73 CVKVWDISHPGNKSPVSQLDCL-NRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELT-S----------  139 (337)
T ss_dssp             EEEEEETTSTTCCSCSEEEECS-CTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEE-C----------
T ss_pred             EEEEEEccCCcccceeEEeeec-CCCCcEEEEEEcCCCC-EEEEeecccccccccccccccccccccc-c----------
Confidence            48999998654322     234 7999999999999999 899999999999999875543  33333 2          


Q ss_pred             ccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeee----
Q 025649           74 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----  149 (250)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  149 (250)
                        +...+..+.++|      ++.++++++.|+.|++||+++++.......+ ...+.+++|++++..++. +..+.    
T Consensus       140 --~~~~v~~~~~~~------~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~-~~~v~~l~~s~~~~~~~~-~~~d~~v~i  209 (337)
T d1gxra_         140 --SAPACYALAISP------DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH-TDGASCIDISNDGTKLWT-GGLDNTVRS  209 (337)
T ss_dssp             --SSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEE-EETTSEEEE
T ss_pred             --cccccccccccc------ccccccccccccccccccccccccccccccc-cccccccccccccccccc-ccccccccc
Confidence              467889999998      9999999999999999999998876655443 478899999999998884 32222    


Q ss_pred             ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649          150 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       150 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                      ++.+..+.+..+ .|...|.+++|+   |+++++++|+.|+.|++||+++.         .. .....|...|.+++|+|
T Consensus       210 ~d~~~~~~~~~~-~~~~~i~~l~~~---~~~~~l~~~~~d~~i~i~d~~~~---------~~-~~~~~~~~~i~~v~~s~  275 (337)
T d1gxra_         210 WDLREGRQLQQH-DFTSQIFSLGYC---PTGEWLAVGMESSNVEVLHVNKP---------DK-YQLHLHESCVLSLKFAY  275 (337)
T ss_dssp             EETTTTEEEEEE-ECSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTSS---------CE-EEECCCSSCEEEEEECT
T ss_pred             cccccceeeccc-ccccceEEEEEc---ccccccceecccccccccccccc---------cc-ccccccccccceEEECC
Confidence            222223333333 477899999999   89999999999999999999986         32 35678999999999998


Q ss_pred             CCCCeEEEeeCCceEEEEeCC
Q 025649          230 TESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       230 ~~~~~l~s~~~d~~i~vw~~~  250 (250)
                       ++++|++++.||.|++||++
T Consensus       276 -~g~~l~s~s~Dg~i~iwd~~  295 (337)
T d1gxra_         276 -CGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             -TSSEEEEEETTSEEEEEETT
T ss_pred             -CCCEEEEEeCCCeEEEEECC
Confidence             88999999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.2e-32  Score=205.59  Aligned_cols=217  Identities=18%  Similarity=0.221  Sum_probs=174.9

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||..+++.+..+. +|...|.++++++++. .+++++.++.+++||.++........              +....
T Consensus       144 ~v~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~--------------~~~~~  207 (388)
T d1erja_         144 LIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLS--------------IEDGV  207 (388)
T ss_dssp             CEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE--------------CSSCE
T ss_pred             ccccccccccccccccc-cccccccccccccccc-cccccccceeeeeeeccccccccccc--------------ccccc
Confidence            58999999999999999 9999999999999998 89999999999999998877666555              23445


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC------CCCCCccceeecccceeEEEe------eeee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS------TTKPLKGSQSTSKVNIRDAEM------EILD  148 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~------~~~~  148 (250)
                      .++.+.+     .++++|++++.|+.|++||.+++........      .+...+.+++|+|+++++++.      ..|+
T Consensus       208 ~~~~~~~-----~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd  282 (388)
T d1erja_         208 TTVAVSP-----GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN  282 (388)
T ss_dssp             EEEEECS-----TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccccccC-----CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEe
Confidence            5566665     4889999999999999999998876655432      234678999999999999842      2233


Q ss_pred             eccCe---------eeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccC
Q 025649          149 QSGGK---------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN  219 (250)
Q Consensus       149 ~~~~~---------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  219 (250)
                      .....         ..........|...|.+++|+   |++++|++|+.||.|++||++++         +++..+.+|.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~sg~~dg~i~vwd~~~~---------~~~~~l~~H~  350 (388)
T d1erja_         283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT---QNDEYILSGSKDRGVLFWDKKSG---------NPLLMLQGHR  350 (388)
T ss_dssp             C---------------CEEEEEECCSSCEEEEEEC---GGGCEEEEEETTSEEEEEETTTC---------CEEEEEECCS
T ss_pred             ccCCccccccccccccceeeecccccceEEEEEEC---CCCCEEEEEeCCCEEEEEECCCC---------cEEEEEeCCC
Confidence            32211         122334556788999999999   89999999999999999999998         6777889999


Q ss_pred             CceeEEEecC-----CCCCeEEEeeCCceEEEEeCC
Q 025649          220 KKVNWLCTTP-----TESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       220 ~~v~~~~~~~-----~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +.|.++++.+     +++.+|++|+.||+|+||+++
T Consensus       351 ~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         351 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999997642     378899999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.9e-32  Score=206.37  Aligned_cols=205  Identities=7%  Similarity=-0.025  Sum_probs=161.4

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC--CccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCE
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR--PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI   97 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (250)
                      ..++|+|++|+|+++ +|++|+.||.|++||+.+++  .+..++ +            |...|.+++|+|      ++++
T Consensus         6 ~~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~~l~-g------------H~~~V~~l~fsp------~~~~   65 (371)
T d1k8kc_           6 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELK-E------------HNGQVTGVDWAP------DSNR   65 (371)
T ss_dssp             CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEEEE-C------------CSSCEEEEEEET------TTTE
T ss_pred             CCCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEEEEec-C------------CCCCEEEEEECC------CCCE
Confidence            357899999999999 89999999999999998775  334444 3            678999999999      9999


Q ss_pred             EEEEeCCCeEEEEeCCCceeEeecc-CCCCCCccceeecccceeEEEeeeeee-------ccCe-eeeeeccccCccccE
Q 025649           98 CVVAKGDGVVDVINIESELNISRSK-STTKPLKGSQSTSKVNIRDAEMEILDQ-------SGGK-RLHLDYSVGGHTAAA  168 (250)
Q Consensus        98 l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~h~~~v  168 (250)
                      |++++.|+.|++||+.++....... ..+...+.++.|+|+++.+++ +..+.       .... ..........|...|
T Consensus        66 l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~-~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v  144 (371)
T d1k8kc_          66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAV-GSGSRVISICYFEQENDWWVCKHIKKPIRSTV  144 (371)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEE-EETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred             EEEEECCCeEEEEeeccccccccccccccccccccccccccccccee-ecccCcceeeeeeccccccccccccccccccc
Confidence            9999999999999998876543332 334578999999999999984 33222       2211 122334566789999


Q ss_pred             EEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec---------ccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649          169 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT---------SINNDLLIKNINLNKKVNWLCTTPTESENLVVCD  239 (250)
Q Consensus       169 ~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  239 (250)
                      .+++|+   |++++|++|+.|+.|++||.........         ......+.....|...|.+++|+| ++++|++++
T Consensus       145 ~~v~~~---p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~  220 (371)
T d1k8kc_         145 LSLDWH---PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVS  220 (371)
T ss_dssp             EEEEEC---TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEE
T ss_pred             cccccc---ccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec-ccccccccc
Confidence            999999   8999999999999999999876532211         111234556678999999999998 889999999


Q ss_pred             CCceEEEEeC
Q 025649          240 TSKVVKVYSI  249 (250)
Q Consensus       240 ~d~~i~vw~~  249 (250)
                      .|+.|++||+
T Consensus       221 ~d~~i~iwd~  230 (371)
T d1k8kc_         221 HDSTVCLADA  230 (371)
T ss_dssp             TTTEEEEEEG
T ss_pred             cCCcceEEee
Confidence            9999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-30  Score=197.15  Aligned_cols=223  Identities=17%  Similarity=0.190  Sum_probs=166.4

Q ss_pred             CcEEEEcccceeeeeecc-----------------CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecC
Q 025649            1 MWQIIDIRQHCLYKSLRA-----------------GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG   63 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~-----------------~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~   63 (250)
                      +|+|||+.+++.+..+..                 +|...|.+++|+|+++ +|++|+.||.|++||...++.+..+. +
T Consensus        84 ~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-~l~s~~~dg~v~i~~~~~~~~~~~~~-~  161 (388)
T d1erja_          84 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQ-G  161 (388)
T ss_dssp             CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEEC-C
T ss_pred             eEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC-cceecccccccccccccccccccccc-c
Confidence            589999999888776641                 4566799999999999 89999999999999999888777665 2


Q ss_pred             CCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceee-cccceeEE
Q 025649           64 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST-SKVNIRDA  142 (250)
Q Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  142 (250)
                                  |...|.++.+++      ++..+++++.++.+++||.++..........  .....+.+ .+++.+++
T Consensus       162 ------------h~~~v~~~~~~~------~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~  221 (388)
T d1erja_         162 ------------HEQDIYSLDYFP------SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE--DGVTTVAVSPGDGKYIA  221 (388)
T ss_dssp             ------------CSSCEEEEEECT------TSSEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEECSTTCCEEE
T ss_pred             ------------cccccccccccc------ccccccccccceeeeeeeccccccccccccc--cccccccccCCCCCeEE
Confidence                        477899999998      8999999999999999999987766655443  33344444 45777777


Q ss_pred             Eeeee-------eeccCeeee----eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec---ccc
Q 025649          143 EMEIL-------DQSGGKRLH----LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT---SIN  208 (250)
Q Consensus       143 ~~~~~-------~~~~~~~~~----~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~  208 (250)
                      + +..       +........    ......+|...|.+++|+   |++++|++|+.||.|++||+++......   ...
T Consensus       222 ~-~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  297 (388)
T d1erja_         222 A-GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT---RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS  297 (388)
T ss_dssp             E-EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEEC--------------
T ss_pred             E-EcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEEC---CCCCEEEEEECCCcEEEEeccCCccccccccccc
Confidence            3 332       222222111    122345789999999999   8999999999999999999987654321   111


Q ss_pred             cceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          209 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .........|...|.+++|+| ++++|++|+.||.|++||++
T Consensus       298 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~  338 (388)
T d1erja_         298 GTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKK  338 (388)
T ss_dssp             -CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETT
T ss_pred             cceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECC
Confidence            234456678999999999998 88999999999999999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.3e-30  Score=193.71  Aligned_cols=223  Identities=14%  Similarity=0.143  Sum_probs=165.9

Q ss_pred             cEEEEcccc--eeeeeeccCCC-CCeeeEEEcC--CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccC
Q 025649            2 WQIIDIRQH--CLYKSLRAGHS-SICSSVQFIP--WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN   76 (250)
Q Consensus         2 i~iwd~~~~--~~~~~l~~~h~-~~v~~l~~~~--~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (250)
                      |+.||....  ..+..+. +|. ..|++++|+|  ++. +|++|+.||+|++||+..++....+....     ......+
T Consensus        42 i~~~~~~~~~~~~~~~~~-gh~~~~v~~v~fsP~~~g~-~lasgs~Dg~i~iWd~~~~~~~~~~~~~~-----~~~~~~~  114 (325)
T d1pgua1          42 VRCLDDGDSKVPPVVQFT-GHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEVNV-----KSEFQVL  114 (325)
T ss_dssp             EEECCSSCCSSCSEEEEC-TTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEEEE-----EEEEECC
T ss_pred             EEEEeCCCCCccceEEEe-CCCCCCEEEEEEeeCCCCC-EEEEEeCCCCEEEeeecCCcceeeeeccc-----ccccccc
Confidence            345554432  3455677 774 6899999998  456 89999999999999998776655443210     0112235


Q ss_pred             CCceeEEecCCCcccCCCCCEEEEEe--CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-------e
Q 025649           77 PAFVHAIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-------L  147 (250)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  147 (250)
                      ...|.+++|++      +++++++++  .++.+++|+.++++....+..+ ...+.+++|+|++.+++..+.       +
T Consensus       115 ~~~v~~v~~s~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~d~~v~~~  187 (325)
T d1pgua1         115 AGPISDISWDF------EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH-SQRINACHLKQSRPMRSMTVGDDGSVVFY  187 (325)
T ss_dssp             SSCEEEEEECT------TSSEEEEEECCSSCSEEEEETTTCCEEEECCSC-SSCEEEEEECSSSSCEEEEEETTTEEEEE
T ss_pred             cCcEEEEEECC------CCCccceeeccccceEEEEeecccccceeeeec-ccccccccccccccceEEEeecccccccc
Confidence            67899999998      999888775  4678999999998877776554 478899999999887553333       3


Q ss_pred             eeccCeeeeeeccccCccccEEEEEeecCCCC-CcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649          148 DQSGGKRLHLDYSVGGHTAAASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC  226 (250)
Q Consensus       148 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (250)
                      +....+.........+|...|.+++|+   |+ +.++++++.|+.|++||++++         +.+..+.+|...+..+.
T Consensus       188 d~~~~~~~~~~~~~~~~~~~v~~v~~~---pd~~~~l~s~~~d~~i~iwd~~~~---------~~~~~l~~~~~~v~~~~  255 (325)
T d1pgua1         188 QGPPFKFSASDRTHHKQGSFVRDVEFS---PDSGEFVITVGSDRKISCFDGKSG---------EFLKYIEDDQEPVQGGI  255 (325)
T ss_dssp             ETTTBEEEEEECSSSCTTCCEEEEEEC---STTCCEEEEEETTCCEEEEETTTC---------CEEEECCBTTBCCCSCE
T ss_pred             cccccccceecccccCCCCccEEeeec---cccceeccccccccceeeeeeccc---------cccccccccccccccce
Confidence            322333334455667888999999999   64 789999999999999999987         56667777877776555


Q ss_pred             ecC--CCCCeEEEeeCCceEEEEeCC
Q 025649          227 TTP--TESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       227 ~~~--~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      |++  +++++|++++.|+.|+|||++
T Consensus       256 ~s~~~~dg~~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         256 FALSWLDSQKFATVGADATIRVWDVT  281 (325)
T ss_dssp             EEEEESSSSEEEEEETTSEEEEEETT
T ss_pred             eeeeccCCCEEEEEeCCCeEEEEECC
Confidence            541  378899999999999999974

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-29  Score=190.22  Aligned_cols=217  Identities=17%  Similarity=0.171  Sum_probs=153.5

Q ss_pred             EEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEe
Q 025649            5 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA   84 (250)
Q Consensus         5 wd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   84 (250)
                      |+..+.+..+.|+ ||++.|.+ +++++|+ +|+||+.||+|+|||+.+++++..+..+             ...|.+++
T Consensus         1 W~~~~~~~~~~l~-GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~~~~h-------------~~~V~~v~   64 (342)
T d2ovrb2           1 WRRGELKSPKVLK-GHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLVGH-------------TGGVWSSQ   64 (342)
T ss_dssp             HHHSCCCCCEEEE-CSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEECCCC-------------SSCEEEEE
T ss_pred             CCCCCCCcCEEEC-CcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEEEEeCC-------------CCCEEEEE
Confidence            6666778888999 99999865 3666788 8999999999999999999887776532             22222222


Q ss_pred             cCCC----------------------------------------------------------------------------
Q 025649           85 IPDA----------------------------------------------------------------------------   88 (250)
Q Consensus        85 ~~~~----------------------------------------------------------------------------   88 (250)
                      ++|.                                                                            
T Consensus        65 ~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  144 (342)
T d2ovrb2          65 MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ  144 (342)
T ss_dssp             EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE
T ss_pred             eCCCccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeec
Confidence            2220                                                                            


Q ss_pred             ------------------------------------cccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccce
Q 025649           89 ------------------------------------DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ  132 (250)
Q Consensus        89 ------------------------------------~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  132 (250)
                                                          .....++.++++++.||.|++||++.++.......+. ..+.++
T Consensus       145 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~-~~v~~~  223 (342)
T d2ovrb2         145 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGM  223 (342)
T ss_dssp             ECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC-SCEEEE
T ss_pred             cccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccc-cceeEE
Confidence                                                1112367789999999999999999888776665543 455555


Q ss_pred             eecccceeEEE------eeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecc
Q 025649          133 STSKVNIRDAE------MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS  206 (250)
Q Consensus       133 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  206 (250)
                      .++  ++++++      +..|+.........+.....|...+.++.++     ++++++|+.||.|++||+++++.....
T Consensus       224 ~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~s~Dg~i~iwd~~tg~~i~~~  296 (342)
T d2ovrb2         224 ELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-----KNFVITSSDDGTVKLWDLKTGEFIRNL  296 (342)
T ss_dssp             EEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-----SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC-----CCeeEEEcCCCEEEEEECCCCCEEEEE
Confidence            554  456663      2234433444444445555677888888776     469999999999999999998443210


Q ss_pred             cccceeeeeeccCCceeEEEecCCCCCeEEEeeCCce----EEEEeCC
Q 025649          207 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV----VKVYSIS  250 (250)
Q Consensus       207 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~----i~vw~~~  250 (250)
                          ......+|...|++++|+| ++.++++|+.||+    |++||+.
T Consensus       297 ----~~~~~~~~~~~v~~v~~s~-~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         297 ----VTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             ----EECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECC
T ss_pred             ----ecccCCCCCCCEEEEEECC-CCCEEEEEeCCCCCeeEEEEEeCC
Confidence                0011236788899999998 8889999998884    9999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.9e-30  Score=191.06  Aligned_cols=218  Identities=11%  Similarity=0.028  Sum_probs=160.8

Q ss_pred             CcEEEEcccceeee--------eeccCCCCCeeeEEEcCCCCeEEEEec--CCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649            1 MWQIIDIRQHCLYK--------SLRAGHSSICSSVQFIPWKPWEVISGG--LDSKLVMWDFSKGRPNKIVNFGLPENNGN   70 (250)
Q Consensus         1 ti~iwd~~~~~~~~--------~l~~~h~~~v~~l~~~~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~   70 (250)
                      +|+|||+..++...        .+. .|.++|.+++|+++++ +|++++  .++.+++|+.++++.+..+. +       
T Consensus        88 ~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------  157 (325)
T d1pgua1          88 KVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWDSGNSLGEVS-G-------  157 (325)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEETTTCCEEEECC-S-------
T ss_pred             CEEEeeecCCcceeeeecccccccc-cccCcEEEEEECCCCC-ccceeeccccceEEEEeecccccceeee-e-------
Confidence            58999997654332        344 6889999999999999 666554  47789999999998877776 2       


Q ss_pred             CCcccCCCceeEEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCCceeEeeccC--CCCCCccceeecccc-eeEEEeee
Q 025649           71 AGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKS--TTKPLKGSQSTSKVN-IRDAEMEI  146 (250)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~  146 (250)
                           |...|.+++|+|      ++. ++++++.|+.+++||.+..+.......  .+...+.+++|+|++ .+++ .+.
T Consensus       158 -----h~~~v~~~~~~~------~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~-s~~  225 (325)
T d1pgua1         158 -----HSQRINACHLKQ------SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI-TVG  225 (325)
T ss_dssp             -----CSSCEEEEEECS------SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE-EEE
T ss_pred             -----cccccccccccc------cccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecc-ccc
Confidence                 578899999998      655 578899999999999998776655433  334678999999974 5555 333


Q ss_pred             ee----eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC--
Q 025649          147 LD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK--  220 (250)
Q Consensus       147 ~~----~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--  220 (250)
                      .|    .++.+..+.+..+.+|...+.++.|++..++|++|++++.|+.|+|||++++         +++..+..|..  
T Consensus       226 ~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~---------~~~~~~~~~~~~~  296 (325)
T d1pgua1         226 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS---------KCVQKWTLDKQQL  296 (325)
T ss_dssp             TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT---------EEEEEEECCTTCG
T ss_pred             cccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC---------CEEEEEEecCCcc
Confidence            22    2234455566778888877765555533367899999999999999999997         45555544443  


Q ss_pred             ceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          221 KVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       221 ~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .+..+++.+..+.+|++++.||.|++||+
T Consensus       297 ~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         297 GNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            34455554434457999999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-29  Score=185.90  Aligned_cols=224  Identities=12%  Similarity=0.110  Sum_probs=150.1

Q ss_pred             cceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCc-----cceecCCCCCC-----CCCCcc----
Q 025649            9 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN-----KIVNFGLPENN-----GNAGQC----   74 (250)
Q Consensus         9 ~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-----~~~~~~~~~~~-----~~~~~~----   74 (250)
                      +.+++++|+ ||..+|++++|+|     |+||+.||+|++||+.++...     ..+........     +.....    
T Consensus         2 ~~~~i~~l~-gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~   75 (287)
T d1pgua2           2 HDEVLKTIS-GHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGIT   75 (287)
T ss_dssp             EEEEEEEEC-CCSSCEEEEETTT-----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEE
T ss_pred             CcceeEEEC-CCCCceEEEEECc-----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeecccccccccc
Confidence            357889999 9999999999976     899999999999998754321     11111100000     000000    


Q ss_pred             --cCCCceeEEecCCC--------------------------------cccCCCCCEEEEEeCC-CeEEEEeCCCceeEe
Q 025649           75 --YNPAFVHAIAIPDA--------------------------------DMLDKTNKICVVAKGD-GVVDVINIESELNIS  119 (250)
Q Consensus        75 --~~~~~v~~~~~~~~--------------------------------~~~~~~~~~l~~~~~d-~~i~~~d~~~~~~~~  119 (250)
                        .....+..+.+++.                                ..+.+++..+++++.+ +.+++|++.......
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~  155 (287)
T d1pgua2          76 KHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF  155 (287)
T ss_dssp             EEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE
T ss_pred             ccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceee
Confidence              00000111111110                                0112256677777665 479999998777766


Q ss_pred             eccCCCCCCccceeecccceeEEEeeeeeec----cCeeee-eeccccCccccEEEEEeecC-------CCCCcEEEEee
Q 025649          120 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLH-LDYSVGGHTAAASCVAFSMF-------GERGKYLISGG  187 (250)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~h~~~v~~~~~~p~-------~~~~~~l~s~~  187 (250)
                      .........+.+++|+|++.++++ +..+..    +....+ ....+.+|...|.+++|+|.       .+++.++++|+
T Consensus       156 ~~~~~~~~~v~~~~~s~~~~~l~~-g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs  234 (287)
T d1pgua2         156 DLKTPLRAKPSYISISPSETYIAA-GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS  234 (287)
T ss_dssp             ECSSCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE
T ss_pred             eeeeccCCceeEEEeccCcccccc-ccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeec
Confidence            666666678999999999999984 332222    222222 23456789999999999852       23567999999


Q ss_pred             CCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          188 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       188 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .|++|++||++...        +.+....+|...|++++|+| ++ .|++++.|+.|++|++
T Consensus       235 ~D~~i~iw~~~~~~--------~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         235 LDTNIFIYSVKRPM--------KIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTSCEEEEESSCTT--------CCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCCCC--------eEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence            99999999997742        45566778999999999997 55 5899999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-28  Score=184.82  Aligned_cols=214  Identities=16%  Similarity=0.203  Sum_probs=157.3

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|+|||+.+++++.+++ +|.++|.+++|+|++  +|++|+.|++|++|+....+.........           .....
T Consensus        34 ~i~vWd~~~~~~~~~l~-~H~~~V~~l~~s~~~--~l~s~s~D~~i~iw~~~~~~~~~~~~~~~-----------~~~~~   99 (355)
T d1nexb2          34 MIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHN-----------STVRC   99 (355)
T ss_dssp             EEEEEETTTTEEEEEEE-CCSSCEEEEEEETTT--EEEEEETTCCEEEEETTTTEEEEEECCCS-----------SCEEE
T ss_pred             eEEEEECCCCcEEEEEE-CCCCCEEEEEEcCCC--EEEEEeccccccccccccccccccccccc-----------ccccc
Confidence            58999999999999999 999999999999864  79999999999999998877655544220           22334


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC--------------------CCccceeeccccee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK--------------------PLKGSQSTSKVNIR  140 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~  140 (250)
                      ....+.+      ++..+++++.|+.|++||++.............                    .......+.++++.
T Consensus       100 ~~~~~~~------~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  173 (355)
T d1nexb2         100 LDIVEYK------NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI  173 (355)
T ss_dssp             EEEEEET------TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTE
T ss_pred             ccccccc------ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccce
Confidence            4555666      889999999999999999987554322111100                    01111234455555


Q ss_pred             EEEeeeeee----ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee
Q 025649          141 DAEMEILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI  216 (250)
Q Consensus       141 ~~~~~~~~~----~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  216 (250)
                      ++. +..+.    ++....+.+....++...+.++.|+   ++++++++++.|+.|++||.+++         ..+..+.
T Consensus       174 ~~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~i~d~~~~---------~~~~~~~  240 (355)
T d1nexb2         174 VVS-GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD---HERKRCISASMDTTIRIWDLENG---------ELMYTLQ  240 (355)
T ss_dssp             EEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTTTEEEEEETTSCEEEEETTTC---------CEEEEEC
T ss_pred             eee-ecccceeeeeecccccceeeeecccccccccccc---ccceeeecccccceEEeeecccc---------ccccccc
Confidence            552 22221    1223344556677788889999999   89999999999999999999997         6667788


Q ss_pred             ccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          217 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +|...|.+++++   +++|++|+.||.|++||++
T Consensus       241 ~h~~~v~~~~~~---~~~l~~~~~dg~i~iwd~~  271 (355)
T d1nexb2         241 GHTALVGLLRLS---DKFLVSAAADGSIRGWDAN  271 (355)
T ss_dssp             CCSSCCCEEEEC---SSEEEEECTTSEEEEEETT
T ss_pred             cccccccccccc---cceeeeeeccccccccccc
Confidence            999999999885   3589999999999999974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.8e-28  Score=187.86  Aligned_cols=176  Identities=14%  Similarity=0.134  Sum_probs=133.2

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      .+...+.+++|+|++  +|++|+.||+|++||+++++++..+...       .....|...|.+++|+|      ++++|
T Consensus       182 ~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~-------~~l~~h~~~V~~l~~sp------dg~~l  246 (393)
T d1sq9a_         182 TPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQ-------HSMINNSNSIRSVKFSP------QGSLL  246 (393)
T ss_dssp             SSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECC-------C---CCCCCEEEEEECS------STTEE
T ss_pred             CCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccc-------cccccccceEEEccccc------cccee
Confidence            456679999999987  7999999999999999999887766532       22334788999999999      99999


Q ss_pred             EEEeCCC---eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeec
Q 025649           99 VVAKGDG---VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM  175 (250)
Q Consensus        99 ~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  175 (250)
                      ++|+.|+   .|++||+++++....+....                           ........+.+|.+.|++++|+ 
T Consensus       247 ~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~---------------------------~~~~~~~~~~gH~~~V~~l~fs-  298 (393)
T d1sq9a_         247 AIAHDSNSFGCITLYETEFGERIGSLSVPT---------------------------HSSQASLGEFAHSSWVMSLSFN-  298 (393)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECBC-----------------------------------CCBSBSSCEEEEEEC-
T ss_pred             eeecCCCCcceeeecccccceeeeeecccc---------------------------ccccceeeeecccCceeeeccC-
Confidence            9999887   49999999887665543321                           1122334677999999999999 


Q ss_pred             CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCC---------------------ceeEEEecCC----
Q 025649          176 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK---------------------KVNWLCTTPT----  230 (250)
Q Consensus       176 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---------------------~v~~~~~~~~----  230 (250)
                        |++++|+||+.|++|++||+++++         ++..+.+|.+                     .+..+.|.+.    
T Consensus       299 --pd~~~l~S~s~D~~v~vWd~~~g~---------~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (393)
T d1sq9a_         299 --DSGETLCSAGWDGKLRFWDVKTKE---------RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS  367 (393)
T ss_dssp             --SSSSEEEEEETTSEEEEEETTTTE---------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred             --CCCCeeEEECCCCEEEEEECCCCC---------EEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCcee
Confidence              899999999999999999999984         4444444433                     3455665542    


Q ss_pred             -----CCCeEEEeeCCceEEEEe
Q 025649          231 -----ESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       231 -----~~~~l~s~~~d~~i~vw~  248 (250)
                           ..+.|++++.|+.|++|.
T Consensus       368 ~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         368 GMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             STTCTTSCEEEEEETTTEEEEEE
T ss_pred             ccccCCCCEEEEEEcCCeEEEEe
Confidence                 123588999999999986

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.1e-28  Score=178.30  Aligned_cols=224  Identities=17%  Similarity=0.151  Sum_probs=156.2

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCC-----C------
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENN-----G------   69 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~-----~------   69 (250)
                      +|+|||+++++++++++ +|.+.|.+++|+  ++ +|++|+.|+.|++|++..+..............     .      
T Consensus        36 ~i~vWd~~~~~~~~~l~-~H~~~V~~v~~~--~~-~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (293)
T d1p22a2          36 TIKIWDKNTLECKRILT-GHTGSVLCLQYD--ER-VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTC  111 (293)
T ss_dssp             CEEEEESSSCCEEEEEC-CCSSCEEEEECC--SS-EEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEE
T ss_pred             eEEEEECCCCcEEEEEe-cCCCCEeeeecc--cc-eeecccccccccccccccccccccccccccccccccccccceeec
Confidence            68999999999999999 999999999874  55 899999999999999987654433321110000     0      


Q ss_pred             -------------------CCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCcc
Q 025649           70 -------------------NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKG  130 (250)
Q Consensus        70 -------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  130 (250)
                                         ......+...+....+        ....+++++.|+.|++||+++++....+.... ..+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~-~~v~  182 (293)
T d1p22a2         112 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--------DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-RGIA  182 (293)
T ss_dssp             ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--------ETTEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEE
T ss_pred             ccccceeEeecccccccccccccccccccccccee--------cccccccccCCCceeeecCCCCcEEEEEcccc-cccc
Confidence                               0000112222222222        45678889999999999999988777665442 3444


Q ss_pred             ceeecccceeEEEeeeee----eccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecc
Q 025649          131 SQSTSKVNIRDAEMEILD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS  206 (250)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  206 (250)
                      .+.+  ++..+++ +..|    .++....+.+..+.+|...+.++  +   +++.+|++|+.||.|++||+.........
T Consensus       183 ~~~~--~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~--~---~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  254 (293)
T d1p22a2         183 CLQY--RDRLVVS-GSSDNTIRLWDIECGACLRVLEGHEELVRCI--R---FDNKRIVSGAYDGKIKVWDLVAALDPRAP  254 (293)
T ss_dssp             EEEE--ETTEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEE--E---CCSSEEEEEETTSCEEEEEHHHHTSTTSC
T ss_pred             cccC--CCCeEEE-ecCCCEEEEEecccceeeeeecccceeeeec--c---ccceEEEEEcCCCEEEEEECCCCcccccc
Confidence            4444  4455653 2222    22334445566777888887764  4   56789999999999999998765444333


Q ss_pred             cccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          207 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       207 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      .....+..+.+|.+.|++++|+   +.+|++|+.||+|+|||
T Consensus       255 ~~~~~~~~~~~H~~~V~~v~~d---~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         255 AGTLCLRTLVEHSGRVFRLQFD---EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TTTTEEEEECCCSSCCCCEEEC---SSCEEECCSSSEEEEEC
T ss_pred             CCceeeEEecCCCCCEEEEEEc---CCEEEEEecCCEEEEeC
Confidence            3335667788999999999984   55899999999999998

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1e-27  Score=178.94  Aligned_cols=219  Identities=13%  Similarity=0.127  Sum_probs=142.8

Q ss_pred             eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcc
Q 025649           11 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM   90 (250)
Q Consensus        11 ~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   90 (250)
                      |.+...+ +|++.|++|+|+|+++ +|++|+.||+|+|||++++.....+...          ..|...|.+++|+|   
T Consensus         2 ~~v~~~~-~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~~~----------~~h~~~V~~v~f~~---   66 (342)
T d1yfqa_           2 QIVQIEQ-APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQS----------LRYKHPLLCCNFID---   66 (342)
T ss_dssp             EEEECSS-CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEE----------EECSSCEEEEEEEE---
T ss_pred             CeEEcCC-CCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceEEEEe----------cCCCCCEEEEEEeC---
Confidence            5667777 9999999999999999 8999999999999999876554333210          11678999999997   


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCe-eeeeeccccC
Q 025649           91 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGK-RLHLDYSVGG  163 (250)
Q Consensus        91 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~  163 (250)
                        .++.+|++|+.|+.|++|++.....................+.++...+++      ...|+..... ..........
T Consensus        67 --~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~  144 (342)
T d1yfqa_          67 --NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS  144 (342)
T ss_dssp             --SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred             --CCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccccc
Confidence              346789999999999999999877766665554445555555566555553      2223322111 1111111111


Q ss_pred             c--cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec------------------------------------
Q 025649          164 H--TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT------------------------------------  205 (250)
Q Consensus       164 h--~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------------------------------------  205 (250)
                      +  ........+.   +.+..+++++.|+.|++||++.......                                    
T Consensus       145 ~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~  221 (342)
T d1yfqa_         145 NNTKVKNKIFTMD---TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE  221 (342)
T ss_dssp             SSSSSCCCEEEEE---ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred             ccccceeeeeeee---ccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEE
Confidence            1  1222333444   4566777777777777777654432110                                    


Q ss_pred             ----------ccc------cceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          206 ----------SIN------NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       206 ----------~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                                ...      .........|...+++++|+| ++.+|++|+.||.|++||++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~  281 (342)
T d1yfqa_         222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETT
T ss_pred             EecCCcceeeccccceeeeeeeccCCCcccccceeEEecC-CccEEEEECCCCEEEEEECC
Confidence                      000      000011234556788999998 88899999999999999974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.3e-27  Score=179.25  Aligned_cols=205  Identities=9%  Similarity=0.129  Sum_probs=139.3

Q ss_pred             CcEEEEcccceeeeeec---------cCCCCCeeeEEEcCCCC----eEEEEecCCCeEEEEEccCCCCccc-eecCCCC
Q 025649            1 MWQIIDIRQHCLYKSLR---------AGHSSICSSVQFIPWKP----WEVISGGLDSKLVMWDFSKGRPNKI-VNFGLPE   66 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~---------~~h~~~v~~l~~~~~~~----~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~   66 (250)
                      +|++|++........+.         ..+...+..++|.++..    .++++++.||++++|++........ +......
T Consensus        90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  169 (393)
T d1sq9a_          90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  169 (393)
T ss_dssp             CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc
Confidence            47888876433221111         03445677888877642    3789999999999999864321110 0000000


Q ss_pred             ----CCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE
Q 025649           67 ----NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus        67 ----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (250)
                          .........+...+.+++|+|      ++ +|++|+.|++|++||+++++.......                   
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~v~~s~------dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~-------------------  223 (393)
T d1sq9a_         170 TLELQGTVESPMTPSQFATSVDISE------RG-LIATGFNNGTVQISELSTLRPLYNFES-------------------  223 (393)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECT------TS-EEEEECTTSEEEEEETTTTEEEEEEEC-------------------
T ss_pred             ceecccceecccCCCCcEEEEEECC------CC-EEEEEeCCCcEEEEeeccccccccccc-------------------
Confidence                000011122445688999998      65 889999999999999998775544332                   


Q ss_pred             EeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC---eEEEEecCCCcceeccc----ccceeeee
Q 025649          143 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSI----NNDLLIKN  215 (250)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~----~~~~~~~~  215 (250)
                                     ...+.+|..+|.+++|+   |+|++|++|+.|+   .|++||++++.......    ........
T Consensus       224 ---------------~~~l~~h~~~V~~l~~s---pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~  285 (393)
T d1sq9a_         224 ---------------QHSMINNSNSIRSVKFS---PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE  285 (393)
T ss_dssp             ---------------CC---CCCCCEEEEEEC---SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred             ---------------ccccccccceEEEcccc---cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeee
Confidence                           24667899999999999   8999999999887   49999999986553221    12233345


Q ss_pred             eccCCceeEEEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          216 INLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       216 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      .+|...|++++|+| ++++|++|+.|++|+|||++
T Consensus       286 ~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         286 FAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             BSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETT
T ss_pred             ecccCceeeeccCC-CCCeeEEECCCCEEEEEECC
Confidence            68999999999998 89999999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=6.9e-26  Score=167.33  Aligned_cols=177  Identities=12%  Similarity=0.138  Sum_probs=145.2

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      ++++||+++++.+..+. +|...+.+++|+|++. +|++++.|+.|++|++.+++.+..+..             +...+
T Consensus       124 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~-------------~~~~i  188 (317)
T d1vyhc1         124 TIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELRE-------------HRHVV  188 (317)
T ss_dssp             EEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECC-------------CSSCE
T ss_pred             ceeEeecccceeeeEEc-cCCCcceeeecccCCC-EEEEEeCCCeEEEEeeccceeeEEEec-------------CCCCc
Confidence            37899999999999999 9999999999999999 899999999999999999887777652             34566


Q ss_pred             eEEecCCCc--------------ccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-
Q 025649           81 HAIAIPDAD--------------MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-  145 (250)
Q Consensus        81 ~~~~~~~~~--------------~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  145 (250)
                      .++.++|..              .....+..+++++.|+.|++||+++++.+..+..+ ...+.++.++|+++++++.+ 
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~  267 (317)
T d1vyhc1         189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCAD  267 (317)
T ss_dssp             EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSCEEEEET
T ss_pred             eEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC-CCCEEEEEECCCCCEEEEEEC
Confidence            777776631              11235678999999999999999999888776654 47899999999999998422 


Q ss_pred             --eeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEe
Q 025649          146 --ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  196 (250)
Q Consensus       146 --~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd  196 (250)
                        ....++....+++..+.+|.+.|++++|+   |++++|++|+.||+|+|||
T Consensus       268 dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s---~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         268 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH---KTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             TTEEEEECCTTSCCCEEEECCSSCEEEEEEC---SSSSCEEEEETTSEEEEEC
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCCEEEEEEc---CCCCEEEEEeCCCeEEEeC
Confidence              22333445556778889999999999999   8999999999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=1e-24  Score=164.33  Aligned_cols=169  Identities=16%  Similarity=0.061  Sum_probs=128.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCC--CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      |++||+++++.++ +  +|...|.+++|+|||+ .|++++.+  ..|++||+++++......              +...
T Consensus        26 v~v~d~~~~~~~~-~--~~~~~v~~~~~spDg~-~l~~~~~~~g~~v~v~d~~~~~~~~~~~--------------~~~~   87 (360)
T d1k32a3          26 AFIQDVSGTYVLK-V--PEPLRIRYVRRGGDTK-VAFIHGTREGDFLGIYDYRTGKAEKFEE--------------NLGN   87 (360)
T ss_dssp             EEEECTTSSBEEE-C--SCCSCEEEEEECSSSE-EEEEEEETTEEEEEEEETTTCCEEECCC--------------CCCS
T ss_pred             EEEEECCCCcEEE-c--cCCCCEEEEEECCCCC-EEEEEEcCCCCEEEEEECCCCcEEEeeC--------------CCce
Confidence            7899998877654 3  5899999999999999 66665544  379999998877554433              5788


Q ss_pred             eeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec---------
Q 025649           80 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS---------  150 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  150 (250)
                      +.+++|+|      ++++|++++.++.+++|++.+++.......+ ...+.+++|+|+|++++........         
T Consensus        88 v~~~~~sp------dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~  160 (360)
T d1k32a3          88 VFAMGVDR------NGKFAVVANDRFEIMTVDLETGKPTVIERSR-EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  160 (360)
T ss_dssp             EEEEEECT------TSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             EEeeeecc------cccccceeccccccccccccccceeeeeecc-cccccchhhccceeeeeeeccccccceeeccccc
Confidence            99999999      9999999999999999999988876655443 3678899999999999843222111         


Q ss_pred             ----cCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCC
Q 025649          151 ----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  199 (250)
Q Consensus       151 ----~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~  199 (250)
                          .....+ ...+..|...+..++|+   |+|++|++++.|+.+++||...
T Consensus       161 ~~v~d~~~~~-~~~~~~~~~~~~~~~~s---pdg~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         161 IHVYDMEGRK-IFAATTENSHDYAPAFD---ADSKNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             EEEEETTTTE-EEECSCSSSBEEEEEEC---TTSCEEEEEESCCCCCEECSSS
T ss_pred             eeeeccccCc-eeeeccccccccccccc---CCCCEEEEEeCCCceEcccccc
Confidence                111111 12333466678899999   8999999999999999998643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=8.2e-26  Score=174.78  Aligned_cols=229  Identities=9%  Similarity=0.012  Sum_probs=153.8

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|+|||+.+++.+.++. .|. .+..++|+|||+ +|++++.|++|++||+.+++.........        ...+...+
T Consensus        43 ~v~vwD~~t~~~~~~l~-~g~-~~~~vafSPDGk-~l~~~~~d~~v~vwd~~t~~~~~~~~i~~--------~~~~~~~~  111 (426)
T d1hzua2          43 QIALVDGDSKKIVKVID-TGY-AVHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTKVAEIKI--------GIEARSVE  111 (426)
T ss_dssp             EEEEEETTTCSEEEEEE-CCS-SEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEEEEEEEC--------CSEEEEEE
T ss_pred             EEEEEECCCCcEEEEEe-CCC-CeeEEEECCCCC-EEEEEeCCCCEEEEEccCCceeEEEEEeC--------CCCCcceE
Confidence            48999999999999999 664 589999999999 89999999999999999988654433220        00133445


Q ss_pred             eEEecCCCcccCCCCCEEEEE-eCCCeEEEEeCCCceeEeeccC------------------------------------
Q 025649           81 HAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKS------------------------------------  123 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~------------------------------------  123 (250)
                      .+++|+|      +|++++++ ..++.+++||..++........                                    
T Consensus       112 ~s~~~sp------DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~  185 (426)
T d1hzua2         112 SSKFKGY------EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  185 (426)
T ss_dssp             ECCSTTC------TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             EeeeecC------CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCC
Confidence            6777887      99987555 5889999999987654322110                                    


Q ss_pred             ------------------CCCCCccceeecccceeEEEee-------eeeeccC--------------------------
Q 025649          124 ------------------TTKPLKGSQSTSKVNIRDAEME-------ILDQSGG--------------------------  152 (250)
Q Consensus       124 ------------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--------------------------  152 (250)
                                        .....+..+.++|+++++....       .++....                          
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (426)
T d1hzua2         186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG  265 (426)
T ss_dssp             EEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTE
T ss_pred             eEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCC
Confidence                              0111233466777777665311       0100000                          


Q ss_pred             -------------------------eeeeeeccccCccccEEEEEeecCCCCCcEEEE-------eeCCCeEEEEecCCC
Q 025649          153 -------------------------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS-------GGNDKLVKVWDCSRF  200 (250)
Q Consensus       153 -------------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s-------~~~d~~i~iwd~~~~  200 (250)
                                               ...+....+.+|...+..++|+   |++++|++       ++.|++|+|||++++
T Consensus       266 ~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~s---Pdg~~l~v~~~~~~s~~~~~tv~vwd~~t~  342 (426)
T d1hzua2         266 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH---PKSSHLYVDTTFNPDARISQSVAVFDLKNL  342 (426)
T ss_dssp             EEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECC---TTCSEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred             ceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcC---CCCceEEEeecCCCCcccCCEEEEEECCCC
Confidence                                     0012334567888889999999   89999994       566899999999998


Q ss_pred             cceecccccceeeeeeccCCceeEEEecCCCCCeEE-Ee----eCCceEEEEeCC
Q 025649          201 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV-VC----DTSKVVKVYSIS  250 (250)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~----~~d~~i~vw~~~  250 (250)
                      +...+............|...|..++|+| ||++++ ++    +.++.|+|||..
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         343 DAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             TSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEEEEEETT
T ss_pred             CcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeEEEEECC
Confidence            54421100000112335666799999998 888664 32    468899999963

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=5e-26  Score=170.11  Aligned_cols=134  Identities=16%  Similarity=0.296  Sum_probs=118.8

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||+++++.+..+. +|.+.|++++|+|+++ +|++|+.||.|++||++..+.+..+...           .+...+
T Consensus       207 ~v~i~d~~~~~~~~~~~-~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~~~~~~~~~~-----------~~~~~i  273 (340)
T d1tbga_         207 SAKLWDVREGMCRQTFT-GHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHD-----------NIICGI  273 (340)
T ss_dssp             EEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCT-----------TCCSCE
T ss_pred             eEEEEECCCCcEEEEEe-CCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeecccccccccccc-----------cccCce
Confidence            37899999999999999 9999999999999999 8999999999999999987766655422           145679


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeecc
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS  160 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (250)
                      .+++|+|      ++++|++|+.||.|++||+.+++.                                        +..
T Consensus       274 ~~~~~s~------~~~~l~~g~~dg~i~iwd~~~~~~----------------------------------------~~~  307 (340)
T d1tbga_         274 TSVSFSK------SGRLLLAGYDDFNCNVWDALKADR----------------------------------------AGV  307 (340)
T ss_dssp             EEEEECS------SSCEEEEEETTSCEEEEETTTCCE----------------------------------------EEE
T ss_pred             EEEEECC------CCCEEEEEECCCEEEEEECCCCcE----------------------------------------EEE
Confidence            9999998      999999999999999999986542                                        346


Q ss_pred             ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEe
Q 025649          161 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  196 (250)
Q Consensus       161 ~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd  196 (250)
                      +.+|.+.|++++|+   |++++|++|+.||.|+|||
T Consensus       308 ~~~H~~~V~~l~~s---~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         308 LAGHDNRVSCLGVT---DDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECCCSSCEEEEEEC---TTSSCEEEEETTSCEEEEC
T ss_pred             EcCCCCCEEEEEEe---CCCCEEEEEccCCEEEEeC
Confidence            77899999999999   8999999999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.1e-24  Score=154.51  Aligned_cols=192  Identities=15%  Similarity=0.253  Sum_probs=124.2

Q ss_pred             eeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccC
Q 025649           13 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD   92 (250)
Q Consensus        13 ~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   92 (250)
                      +.... .|...|+|++|  +++ +|+||+.||+|+|||+++++++.++. +            |...|.+++|.      
T Consensus         8 i~~~~-~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~l~-~------------H~~~V~~v~~~------   64 (293)
T d1p22a2           8 IHCRS-ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRILT-G------------HTGSVLCLQYD------   64 (293)
T ss_dssp             EECCC-SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEEEC-C------------CSSCEEEEECC------
T ss_pred             EeccC-CCCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEEEEe-c------------CCCCEeeeecc------
Confidence            34455 78888998765  677 89999999999999999999988887 3            57889988764      


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeecc---------------
Q 025649           93 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSG---------------  151 (250)
Q Consensus        93 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---------------  151 (250)
                        +++|++|+.|+.|++|++..+............   .....+....++.      ...++...               
T Consensus        65 --~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (293)
T d1p22a2          65 --ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA---VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA  139 (293)
T ss_dssp             --SSEEEEEETTSCEEEEESSSCCEEEEECCCCSC---EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS
T ss_pred             --cceeecccccccccccccccccccccccccccc---cccccccccceeecccccceeEeecccccccccccccccccc
Confidence              679999999999999999987765544433211   1111111111110      11111111               


Q ss_pred             -------------------------CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecc
Q 025649          152 -------------------------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS  206 (250)
Q Consensus       152 -------------------------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  206 (250)
                                               ....+.+..+.++...+..+.++     +.++++++.||.|++||+++.      
T Consensus       140 ~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~dg~i~i~d~~~~------  208 (293)
T d1p22a2         140 AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----DRLVVSGSSDNTIRLWDIECG------  208 (293)
T ss_dssp             CEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----TTEEEEEETTSCEEEEETTTC------
T ss_pred             ccccceecccccccccCCCceeeecCCCCcEEEEEcccccccccccCC-----CCeEEEecCCCEEEEEecccc------
Confidence                                     11223344445555555554433     467777777777777777665      


Q ss_pred             cccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          207 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       207 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                         ..+....+|...+..+  . .++.+|++|+.||.|++||+
T Consensus       209 ---~~~~~~~~~~~~v~~~--~-~~~~~l~sg~~dg~i~iwd~  245 (293)
T d1p22a2         209 ---ACLRVLEGHEELVRCI--R-FDNKRIVSGAYDGKIKVWDL  245 (293)
T ss_dssp             ---CEEEEECCCSSCEEEE--E-CCSSEEEEEETTSCEEEEEH
T ss_pred             ---eeeeeecccceeeeec--c-ccceEEEEEcCCCEEEEEEC
Confidence               6666666666666543  2 37777777777777777775

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=9.4e-24  Score=158.25  Aligned_cols=199  Identities=18%  Similarity=0.201  Sum_probs=146.9

Q ss_pred             eeeeccCCCCCe-eeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCccc
Q 025649           13 YKSLRAGHSSIC-SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML   91 (250)
Q Consensus        13 ~~~l~~~h~~~v-~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   91 (250)
                      ..+|+ ||.+.| +|++|  +++ +|+||+.||+|++||+.+++.+..+. +            |...|.+++|+|    
T Consensus         5 ~~tL~-GH~~~vitc~~~--~~~-~l~tgs~Dg~i~vWd~~~~~~~~~l~-~------------H~~~V~~l~~s~----   63 (355)
T d1nexb2           5 RTTLR-GHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQLS-G------------HDGGVWALKYAH----   63 (355)
T ss_dssp             EEEEE-CCSSSCEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEEEE-C------------CSSCEEEEEEET----
T ss_pred             cEEEC-CcCCCcEEEEEE--CCC-EEEEEeCCCeEEEEECCCCcEEEEEE-C------------CCCCEEEEEEcC----
Confidence            35688 998875 66665  566 89999999999999999999988887 3            578999999987    


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC-CCccceeecccceeEEE------eeeeeeccCeee---------
Q 025649           92 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTK-PLKGSQSTSKVNIRDAE------MEILDQSGGKRL---------  155 (250)
Q Consensus        92 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---------  155 (250)
                         +++|++|+.|+.|++|+............... .......+.+++..+++      +..|+.......         
T Consensus        64 ---~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~  140 (355)
T d1nexb2          64 ---GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY  140 (355)
T ss_dssp             ---TTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CC
T ss_pred             ---CCEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecccccccee
Confidence               46899999999999999998876655444322 33455667788887773      222332211100         


Q ss_pred             -----------eeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeE
Q 025649          156 -----------HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW  224 (250)
Q Consensus       156 -----------~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (250)
                                 ........|...+...  .   +++++++++..|+.|++||++++         +.+....++...+..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~v~~~--~---~~~~~~~~~~~d~~i~~~d~~~~---------~~~~~~~~~~~~~~~  206 (355)
T d1nexb2         141 PLVFHTPEENPYFVGVLRGHMASVRTV--S---GHGNIVVSGSYDNTLIVWDVAQM---------KCLYILSGHTDRIYS  206 (355)
T ss_dssp             CEEESCTTTCTTEEEEEECCSSCEEEE--E---EETTEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEE
T ss_pred             ccceeccccccceeeeeeecccccccc--c---cccceeeeecccceeeeeecccc---------cceeeeecccccccc
Confidence                       0011122334444433  3   56789999999999999999987         555667788888999


Q ss_pred             EEecCCCCCeEEEeeCCceEEEEeCC
Q 025649          225 LCTTPTESENLVVCDTSKVVKVYSIS  250 (250)
Q Consensus       225 ~~~~~~~~~~l~s~~~d~~i~vw~~~  250 (250)
                      +.++| ++..+++++.|+.|++||++
T Consensus       207 ~~~~~-~~~~~~~~~~d~~i~i~d~~  231 (355)
T d1nexb2         207 TIYDH-ERKRCISASMDTTIRIWDLE  231 (355)
T ss_dssp             EEEET-TTTEEEEEETTSCEEEEETT
T ss_pred             ccccc-cceeeecccccceEEeeecc
Confidence            99997 78899999999999999964

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.7e-24  Score=161.27  Aligned_cols=214  Identities=12%  Similarity=0.097  Sum_probs=133.4

Q ss_pred             CcEEEEcccceeee---eeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649            1 MWQIIDIRQHCLYK---SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         1 ti~iwd~~~~~~~~---~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      +|+|||+++++...   ... +|..+|.+++|+|++..+|++|+.||+|++|++..+.........            +.
T Consensus        34 ~v~iwd~~~~~~~~~~~~~~-~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~------------~~  100 (342)
T d1yfqa_          34 SLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN------------EA  100 (342)
T ss_dssp             EEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSC------------CC
T ss_pred             eEEEEEccCCCcceEEEEec-CCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccc------------cc
Confidence            58999997654322   233 699999999999987658999999999999999887765555433            22


Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEee----ccCC-CCCCccceeecc----------------
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR----SKST-TKPLKGSQSTSK----------------  136 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~-~~~~~~~~~~~~----------------  136 (250)
                      .......+.+      +...+++++.++.+++||++.+.....    .... .........+.+                
T Consensus       101 ~~~~~~~~~~------~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  174 (342)
T d1yfqa_         101 NLGICRICKY------GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQW  174 (342)
T ss_dssp             CSCEEEEEEE------TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEE
T ss_pred             cccccccccc------ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEE
Confidence            2333344444      788999999999999999864321110    0000 000111111111                


Q ss_pred             ------------------------------cceeEEEeeeeeec-------cC---------ee---eeeeccccCcccc
Q 025649          137 ------------------------------VNIRDAEMEILDQS-------GG---------KR---LHLDYSVGGHTAA  167 (250)
Q Consensus       137 ------------------------------~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~~h~~~  167 (250)
                                                    ++..++ .+..++.       ..         ..   ........+|...
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (342)
T d1yfqa_         175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA-CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP  253 (342)
T ss_dssp             EESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE-EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCC
T ss_pred             EecccCcccceeeeecccccceeeeEeecCCCCEEE-eecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccccc
Confidence                                          122222 1111110       00         00   0011223456778


Q ss_pred             EEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEE
Q 025649          168 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY  247 (250)
Q Consensus       168 v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw  247 (250)
                      +++++|+   |++++|++|+.||.|++||++++         +.+..+..+ ..+..++++| +++++++++.|+.+++|
T Consensus       254 v~~l~~s---p~~~~lasg~~Dg~v~vWD~~~~---------~~l~~~~~~-~~~~~~~~s~-~~~~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         254 VNSIEFS---PRHKFLYTAGSDGIISCWNLQTR---------KKIKNFAKF-NEDSVVKIAC-SDNILCLATSDDTFKTN  319 (342)
T ss_dssp             EEEEEEC---TTTCCEEEEETTSCEEEEETTTT---------EEEEECCCC-SSSEEEEEEE-CSSEEEEEEECTHHHHC
T ss_pred             ceeEEec---CCccEEEEECCCCEEEEEECCCC---------cEEEEecCC-CCCEEEEEEe-CCCEEEEEEcCCcEEEe
Confidence            9999999   89999999999999999999997         444444322 2333456666 77889998888776665


Q ss_pred             e
Q 025649          248 S  248 (250)
Q Consensus       248 ~  248 (250)
                      .
T Consensus       320 ~  320 (342)
T d1yfqa_         320 A  320 (342)
T ss_dssp             S
T ss_pred             e
Confidence            4

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=3.4e-22  Score=146.84  Aligned_cols=211  Identities=13%  Similarity=0.081  Sum_probs=150.7

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|.+||+++++.+++++  ....+..++|+|+|+.++++++.++.|++||+.+++.+..+..+              ...
T Consensus        13 ~v~v~D~~t~~~~~~i~--~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~--------------~~~   76 (301)
T d1l0qa2          13 NISVIDVTSNKVTATIP--VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--------------SSP   76 (301)
T ss_dssp             EEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--------------SSE
T ss_pred             EEEEEECCCCeEEEEEE--CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc--------------ccc
Confidence            58999999999999998  34557899999999944578888999999999999988888744              457


Q ss_pred             eEEecCCCcccCCCCCEE-EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-------eeeccC
Q 025649           81 HAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-------LDQSGG  152 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  152 (250)
                      ..+++++      ++..+ +++..++.+.+|+..+++....+...  .....+.++|++..++....       ++....
T Consensus        77 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~  148 (301)
T d1l0qa2          77 QGVAVSP------DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK  148 (301)
T ss_dssp             EEEEECT------TSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ccccccc------ccccccccccccceeeecccccceeeeecccc--ccceEEEeecCCCeeeeeeccccceeeeecccc
Confidence            8899998      77655 55667889999999998877766554  45677888888877753211       111110


Q ss_pred             eee---------------------------------------eeeccccCccccEEEEEeecCCCCCcEEEEee---CCC
Q 025649          153 KRL---------------------------------------HLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDK  190 (250)
Q Consensus       153 ~~~---------------------------------------~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~---~d~  190 (250)
                      ...                                       +....+. ....+..++|+   ++++.++.++   .++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~g~~~~v~~~~~~~~  224 (301)
T d1l0qa2         149 AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVN---PEGTKAYVTNVDKYFN  224 (301)
T ss_dssp             EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEEC---TTSSEEEEEEECSSCC
T ss_pred             ceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeeccc-ccCCcceeecc---ccccccccccccceee
Confidence            000                                       0001111 12345678888   7888776543   356


Q ss_pred             eEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeE-EEeeCCceEEEEeCC
Q 025649          191 LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL-VVCDTSKVVKVYSIS  250 (250)
Q Consensus       191 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~vw~~~  250 (250)
                      .|++||+.++         +.+..+ .+...+..++|+| ||++| ++++.|+.|++||++
T Consensus       225 ~v~v~D~~t~---------~~~~~~-~~~~~~~~va~sp-dg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         225 TVSMIDTGTN---------KITARI-PVGPDPAGIAVTP-DGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             EEEEEETTTT---------EEEEEE-ECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred             eeeeeecCCC---------eEEEEE-cCCCCEEEEEEeC-CCCEEEEEECCCCeEEEEECC
Confidence            8999999997         443333 3445688999998 88876 577789999999974

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=1.4e-22  Score=151.11  Aligned_cols=218  Identities=9%  Similarity=0.035  Sum_probs=155.1

Q ss_pred             CcEEEEcccceeeeeecc-CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +|+|||+++++.+..+.. .+...+.+++|+|||+.++++++.++.|.+||+.+++.+..+.....        ..+...
T Consensus        12 ~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~--------~~~~~~   83 (337)
T d1pbyb_          12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP--------EERVKS   83 (337)
T ss_dssp             EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT--------TEEEEC
T ss_pred             EEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC--------cccccc
Confidence            489999999999999871 23456889999999994457888999999999999998887764310        001223


Q ss_pred             eeEEecCCCcccCCCCCEEEEEe------------CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee--
Q 025649           80 VHAIAIPDADMLDKTNKICVVAK------------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME--  145 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  145 (250)
                      +..++++|      ++++++++.            .++.+.+||..+++....+...  ..+..++++|+|++++..+  
T Consensus        84 ~~~v~~s~------dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~  155 (337)
T d1pbyb_          84 LFGAALSP------DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGLGRD  155 (337)
T ss_dssp             TTCEEECT------TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEESSS
T ss_pred             eeeEEEcC------CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc--CCceEEEEcCCCCEEEEEcCC
Confidence            45788998      999888876            3578899999998887776654  5678899999999887421  


Q ss_pred             --eeeeccCeeee---------------------------------------------------ee------------cc
Q 025649          146 --ILDQSGGKRLH---------------------------------------------------LD------------YS  160 (250)
Q Consensus       146 --~~~~~~~~~~~---------------------------------------------------~~------------~~  160 (250)
                        .++........                                                   .+            ..
T Consensus       156 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (337)
T d1pbyb_         156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence              11111100000                                                   00            01


Q ss_pred             ccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC
Q 025649          161 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT  240 (250)
Q Consensus       161 ~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  240 (250)
                      +..+...+..+.++   +++.+++.+  ++.|++||++++         +.+.. ..+...+.+++|+| ||++|++++.
T Consensus       236 ~~~~~~~~~~~~~~---~~~~~~~~~--~~~i~v~d~~~~---------~~~~~-~~~~~~~~~~~~s~-dG~~l~v~~~  299 (337)
T d1pbyb_         236 VRIMDVFYFSTAVN---PAKTRAFGA--YNVLESFDLEKN---------ASIKR-VPLPHSYYSVNVST-DGSTVWLGGA  299 (337)
T ss_dssp             EEECSSCEEEEEEC---TTSSEEEEE--ESEEEEEETTTT---------EEEEE-EECSSCCCEEEECT-TSCEEEEESB
T ss_pred             ecCCCcceEEEEec---ccceEEEEc--cccEEEEECCCC---------cEEEE-EcCCCCEEEEEECC-CCCEEEEEeC
Confidence            11233344556666   677777665  589999999997         33333 35667889999998 9999999999


Q ss_pred             CceEEEEeCC
Q 025649          241 SKVVKVYSIS  250 (250)
Q Consensus       241 d~~i~vw~~~  250 (250)
                      |+.|++||.+
T Consensus       300 ~~~i~v~D~~  309 (337)
T d1pbyb_         300 LGDLAAYDAE  309 (337)
T ss_dssp             SSEEEEEETT
T ss_pred             CCcEEEEECC
Confidence            9999999973

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=6.7e-23  Score=150.83  Aligned_cols=156  Identities=17%  Similarity=0.179  Sum_probs=120.0

Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE-----eeeeeec
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE-----MEILDQS  150 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  150 (250)
                      |...|++++|+|      ++++|++|+.||.|++||+++++....+...+...+.+++|+|++.+++.     +..++..
T Consensus        11 H~~~V~~l~~s~------dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2          11 HNKAITALSSSA------DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             CSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred             CCCCcEEEEECC------CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccC
Confidence            889999999999      99999999999999999999998888777666788999999999987653     1122211


Q ss_pred             cCe-------------eeee-----------------eccc-------cCccccEEEEEeecCCCCCcEEEEeeCCCeEE
Q 025649          151 GGK-------------RLHL-----------------DYSV-------GGHTAAASCVAFSMFGERGKYLISGGNDKLVK  193 (250)
Q Consensus       151 ~~~-------------~~~~-----------------~~~~-------~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~  193 (250)
                      ...             ....                 +..+       ......+.+++|+   |+++++++|+.||.|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s---~~~~~l~~g~~dg~i~  161 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS---NDKQFVAVGGQDSKVH  161 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC---TTSCEEEEEETTSEEE
T ss_pred             Ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccc
Confidence            100             0000                 0000       0122356788898   8999999999999999


Q ss_pred             EEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          194 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       194 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      +||+++...        .......|...|.+++|+| ++++|++++.|+.|++||+
T Consensus       162 ~~d~~~~~~--------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~  208 (299)
T d1nr0a2         162 VYKLSGASV--------SEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSV  208 (299)
T ss_dssp             EEEEETTEE--------EEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEG
T ss_pred             ccccccccc--------ccccccccccccccccccc-ccccccccccccccccccc
Confidence            999987632        1224567899999999998 8899999999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.2e-22  Score=146.34  Aligned_cols=141  Identities=13%  Similarity=0.206  Sum_probs=112.3

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++|++...+....+...|...+++++|+|++. +|++|+.||.|++||+.+++........            |...|
T Consensus       142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~------------h~~~v  208 (287)
T d1pgua2         142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQSREVKTSRWAF------------RTSKI  208 (287)
T ss_dssp             CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEECCSCC------------CSSCE
T ss_pred             eeeeeeccccceeeeeeeccCCceeEEEeccCcc-ccccccccccccceeecccccccccccc------------ccccc
Confidence            4789999877766666646888999999999999 8999999999999999887654432222            67889


Q ss_pred             eEEecCCCc----ccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeee
Q 025649           81 HAIAIPDAD----MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH  156 (250)
Q Consensus        81 ~~~~~~~~~----~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (250)
                      .+++|+|..    ....++.++++|+.|+.|++||++.+.                                       +
T Consensus       209 ~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~---------------------------------------~  249 (287)
T d1pgua2         209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM---------------------------------------K  249 (287)
T ss_dssp             EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT---------------------------------------C
T ss_pred             ceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC---------------------------------------e
Confidence            999998842    123467899999999999999987522                                       1


Q ss_pred             eeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEec
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  197 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~  197 (250)
                      .+..+.+|...|++++|+   |++ .|++++.|+.|++||+
T Consensus       250 ~~~~~~~h~~~V~~v~~~---~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         250 IIKALNAHKDGVNNLLWE---TPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CEEETTSSTTCEEEEEEE---ETT-EEEEEETTSCEEEEEE
T ss_pred             EEEEeCCCCCCeEEEEEC---CCC-EEEEEECCCeEEEEEE
Confidence            234567899999999999   665 5889999999999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=8.4e-22  Score=148.21  Aligned_cols=186  Identities=9%  Similarity=-0.012  Sum_probs=141.2

Q ss_pred             eeEEEcC-CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC
Q 025649           25 SSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG  103 (250)
Q Consensus        25 ~~l~~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~  103 (250)
                      ..-.||| ||+ ++++++ +|.|.+||+..++.+..   .            |...|.+++|+|      ++++|++++.
T Consensus         6 ~~~~fSP~dG~-~~a~~~-~g~v~v~d~~~~~~~~~---~------------~~~~v~~~~~sp------Dg~~l~~~~~   62 (360)
T d1k32a3           6 FAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTYVLKV---P------------EPLRIRYVRRGG------DTKVAFIHGT   62 (360)
T ss_dssp             GEEEEEECGGG-CEEEEE-TTEEEEECTTSSBEEEC---S------------CCSCEEEEEECS------SSEEEEEEEE
T ss_pred             hcccccCCCCC-EEEEEE-CCeEEEEECCCCcEEEc---c------------CCCCEEEEEECC------CCCEEEEEEc
Confidence            3567999 898 788776 57999999987765432   3            578899999999      9999987765


Q ss_pred             CC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee---eeeccCeeeeeeccccCccccEEEEEeecCCC
Q 025649          104 DG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI---LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE  178 (250)
Q Consensus       104 d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  178 (250)
                      +.  .|++||+++++......  +...+.+++|+|+|+++++.+.   ...+.....+....+..|...+.+++|+   |
T Consensus        63 ~~g~~v~v~d~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---p  137 (360)
T d1k32a3          63 REGDFLGIYDYRTGKAEKFEE--NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS---D  137 (360)
T ss_dssp             TTEEEEEEEETTTCCEEECCC--CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC---T
T ss_pred             CCCCEEEEEECCCCcEEEeeC--CCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhc---c
Confidence            53  79999999887664433  3478899999999999985221   1112223333445667788889999999   8


Q ss_pred             CCcEEEEe----------eCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          179 RGKYLISG----------GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       179 ~~~~l~s~----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      +|++|+.+          ..++.+++||+.++.          ......+...+..++|+| ||+.|++++.++.+++|+
T Consensus       138 dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~----------~~~~~~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d  206 (360)
T d1k32a3         138 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----------IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPD  206 (360)
T ss_dssp             TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----------EEECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEEC
T ss_pred             ceeeeeeeccccccceeeccccceeeeccccCc----------eeeecccccccccccccC-CCCEEEEEeCCCceEccc
Confidence            99999854          345579999999862          234456677788899998 999999999999999998


Q ss_pred             C
Q 025649          249 I  249 (250)
Q Consensus       249 ~  249 (250)
                      .
T Consensus       207 ~  207 (360)
T d1k32a3         207 R  207 (360)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=6e-21  Score=142.64  Aligned_cols=222  Identities=11%  Similarity=0.005  Sum_probs=141.9

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|.+||+++++++.+++..|...+.+++|+|||+.++++++.++.|.+||+.+++.+..+......       ......+
T Consensus        19 ~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~-------~~~~~~~   91 (346)
T d1jmxb_          19 NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP-------GEVGRSM   91 (346)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST-------TEEEECS
T ss_pred             EEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccc-------cccCCce
Confidence            478999999999998873456678999999999955678889999999999999888777633100       0011234


Q ss_pred             eEEecCCCcccCCCCCEEEEEe------------CCCeEEEEeCCCceeEeeccCC-CCCCccce---------------
Q 025649           81 HAIAIPDADMLDKTNKICVVAK------------GDGVVDVINIESELNISRSKST-TKPLKGSQ---------------  132 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~---------------  132 (250)
                      ..++++|      +|+++++++            .++.+.+||..+++........ ....+..+               
T Consensus        92 ~~v~~s~------DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (346)
T d1jmxb_          92 YSFAISP------DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI  165 (346)
T ss_dssp             SCEEECT------TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSE
T ss_pred             EEEEEec------CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcc
Confidence            6788888      888887765            3667888887765433221111 01122222               


Q ss_pred             -----------------------eecccceeEEEee-------eeee-----------c-----------cCe-eeeeec
Q 025649          133 -----------------------STSKVNIRDAEME-------ILDQ-----------S-----------GGK-RLHLDY  159 (250)
Q Consensus       133 -----------------------~~~~~~~~~~~~~-------~~~~-----------~-----------~~~-~~~~~~  159 (250)
                                             .++|++..+....       ....           .           +.. ......
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (346)
T d1jmxb_         166 YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ  245 (346)
T ss_dssp             EEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE
T ss_pred             eEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEE
Confidence                                   2333332221000       0000           0           000 000011


Q ss_pred             cccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee
Q 025649          160 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD  239 (250)
Q Consensus       160 ~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  239 (250)
                      .+..|...+..+.++   +++.+++.+. ++.|.+||..++         +.+.. ..+...+.+++|+| ||+++++++
T Consensus       246 ~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~v~v~d~~~~---------~~~~~-~~~~~~~~~va~s~-DG~~l~v~~  310 (346)
T d1jmxb_         246 EFADLTELYFTGLRS---PKDPNQIYGV-LNRLAKYDLKQR---------KLIKA-ANLDHTYYCVAFDK-KGDKLYLGG  310 (346)
T ss_dssp             EEEECSSCEEEEEEC---SSCTTEEEEE-ESEEEEEETTTT---------EEEEE-EECSSCCCEEEECS-SSSCEEEES
T ss_pred             EeecccceeEEEEEe---CCCCEEEEec-CCeEEEEECCCC---------cEEEE-EcCCCCEEEEEEcC-CCCEEEEEe
Confidence            223455567777887   6666666665 468999999997         44333 34556799999998 999999999


Q ss_pred             CCceEEEEeCC
Q 025649          240 TSKVVKVYSIS  250 (250)
Q Consensus       240 ~d~~i~vw~~~  250 (250)
                      .|+.|++||++
T Consensus       311 ~d~~v~v~D~~  321 (346)
T d1jmxb_         311 TFNDLAVFNPD  321 (346)
T ss_dssp             BSSEEEEEETT
T ss_pred             CCCcEEEEECc
Confidence            99999999974

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.3e-21  Score=141.01  Aligned_cols=171  Identities=18%  Similarity=0.230  Sum_probs=127.5

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCce
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV   80 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (250)
                      +|++||....+.+..+. +|...+..+.+  ++. +|++|+.||.|++||++.++.+..+..             |...+
T Consensus       158 ~i~~~d~~~~~~~~~~~-~~~~~~~~~~~--~~~-~l~s~~~dg~i~~~d~~~~~~~~~~~~-------------~~~~v  220 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTLTG-------------HQSLT  220 (342)
T ss_dssp             CEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEECC-------------CCSCE
T ss_pred             eEEEeecccceeeEEEc-CcccccccccC--CCC-EEEEEeCCCeEEEeecccceeeeEecc-------------cccce
Confidence            47899999999999999 99887776665  566 899999999999999999888777663             35667


Q ss_pred             eEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE------eeeeeeccCee
Q 025649           81 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE------MEILDQSGGKR  154 (250)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  154 (250)
                      .++.++        +++|++++.|+.|++||+...+....+............+.+++.++++      +..|+....+.
T Consensus       221 ~~~~~~--------~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~  292 (342)
T d2ovrb2         221 SGMELK--------DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF  292 (342)
T ss_dssp             EEEEEE--------TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred             eEEecC--------CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCE
Confidence            777664        5699999999999999999887776665544334444444555566663      22344333332


Q ss_pred             eeeec--cccCccccEEEEEeecCCCCCcEEEEeeCCCe----EEEEecCC
Q 025649          155 LHLDY--SVGGHTAAASCVAFSMFGERGKYLISGGNDKL----VKVWDCSR  199 (250)
Q Consensus       155 ~~~~~--~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~----i~iwd~~~  199 (250)
                      .+.+.  ...+|...|++++|+   |++.++++|+.||+    |++||+..
T Consensus       293 i~~~~~~~~~~~~~~v~~v~~s---~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         293 IRNLVTLESGGSGGVVWRIRAS---NTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEECTTGGGTCEEEEEEEC---SSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEecccCCCCCCCEEEEEEC---CCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            22221  224688899999999   89999999999885    99999875

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=4.3e-20  Score=142.54  Aligned_cols=189  Identities=10%  Similarity=-0.003  Sum_probs=135.2

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccc--eecCCCCCCCCCCcccCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI--VNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   78 (250)
                      +|.|||.++++++..+. .|. .+..++|||||+ +|++++.|++|++||+.+++....  ++.+          ..+..
T Consensus        43 ~v~v~D~~t~~v~~~~~-~g~-~~~~v~fSpDG~-~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~----------~~~~~  109 (432)
T d1qksa2          43 QIALIDGSTYEIKTVLD-TGY-AVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIKIG----------SEARS  109 (432)
T ss_dssp             EEEEEETTTCCEEEEEE-CSS-CEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCEEEEEECC----------SEEEE
T ss_pred             EEEEEECCCCcEEEEEe-CCC-CeeEEEECCCCC-EEEEEcCCCCEEEEEeeCCCceEEEEEecC----------CCCCC
Confidence            47899999999999999 664 689999999999 899999999999999988765433  3321          01233


Q ss_pred             ceeEEecCCCcccCCCCCEE-EEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeee
Q 025649           79 FVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL  157 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (250)
                      .+.+..|+|      ||++| ++++.++.|++||..+++......... ..+....+                       
T Consensus       110 ~~~s~~~Sp------DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~-~~~~~~~~-----------------------  159 (432)
T d1qksa2         110 IETSKMEGW------EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG-MTYDEQEY-----------------------  159 (432)
T ss_dssp             EEECCSTTC------TTTEEEEEEEETTEEEEEETTTCCEEEEEECCE-ECTTTCCE-----------------------
T ss_pred             eEEecccCC------CCCEEEEEcCCCCeEEEEeCccccceeeeccCC-ccccceec-----------------------
Confidence            455667777      99976 677889999999999988766544331 11111111                       


Q ss_pred             eccccCccccEEEEEeecCCCCCcEE-EEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          158 DYSVGGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                           .+......+.++   ++|..+ ++...++.|.+||..+.+.        .......+...+..++++| +|++++
T Consensus       160 -----~~~~~~~~v~~s---~dg~~~~vs~~~~~~i~~~d~~~~~~--------~~~~~i~~g~~~~~~~~sp-dg~~~~  222 (432)
T d1qksa2         160 -----HPEPRVAAILAS---HYRPEFIVNVKETGKILLVDYTDLNN--------LKTTEISAERFLHDGGLDG-SHRYFI  222 (432)
T ss_dssp             -----ESCCCEEEEEEC---SSSSEEEEEETTTTEEEEEETTCSSE--------EEEEEEECCSSEEEEEECT-TSCEEE
T ss_pred             -----cCCCceeEEEEC---CCCCEEEEEEccCCeEEEEEccCCCc--------ceEEEEcccCccccceECC-CCCEEE
Confidence                 234456678889   777655 5667789999999988632        1123345667788999998 888777


Q ss_pred             Eee-CCceEEEEeC
Q 025649          237 VCD-TSKVVKVYSI  249 (250)
Q Consensus       237 s~~-~d~~i~vw~~  249 (250)
                      +++ .++.+.++|.
T Consensus       223 va~~~~~~v~v~d~  236 (432)
T d1qksa2         223 TAANARNKLVVIDT  236 (432)
T ss_dssp             EEEGGGTEEEEEET
T ss_pred             EeccccceEEEeec
Confidence            665 4557877775

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=9.4e-18  Score=124.58  Aligned_cols=221  Identities=13%  Similarity=0.063  Sum_probs=139.0

Q ss_pred             CcEEEEcccc---eeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCC
Q 025649            1 MWQIIDIRQH---CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP   77 (250)
Q Consensus         1 ti~iwd~~~~---~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      +|++||+.+.   +.++.+.  |.+.+..|+|+|||+.+++++..|+.|++|++........+...          ....
T Consensus        15 ~I~v~~~~~~~~l~~~~~~~--~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~----------~~~~   82 (333)
T d1ri6a_          15 QIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE----------SALP   82 (333)
T ss_dssp             EEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE----------EECS
T ss_pred             cEEEEEEcCCCCeEEEEEEc--CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee----------cccC
Confidence            4899998754   3344444  88999999999999944467777999999999866543332211          0023


Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeC-CCeEEEEeCCCceeEeecc-CCCCCCccceeecccceeEEEee-------eee
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSK-STTKPLKGSQSTSKVNIRDAEME-------ILD  148 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~  148 (250)
                      ..+..++++|      +|++|++++. ++.+.+|+........... ......+.++.++|++++++...       .++
T Consensus        83 ~~p~~l~~sp------Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~  156 (333)
T d1ri6a_          83 GSLTHISTDH------QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFT  156 (333)
T ss_dssp             SCCSEEEECT------TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             CCceEEEEcC------CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEE
Confidence            4567899999      9999988874 7789999887655433322 22335677888888888766311       111


Q ss_pred             eccCe----------------eee-------------------------------------eeccc---cCccccEEEEE
Q 025649          149 QSGGK----------------RLH-------------------------------------LDYSV---GGHTAAASCVA  172 (250)
Q Consensus       149 ~~~~~----------------~~~-------------------------------------~~~~~---~~h~~~v~~~~  172 (250)
                      .....                ...                                     .+...   .........++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (333)
T d1ri6a_         157 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  236 (333)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             eccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEE
Confidence            11000                000                                     00000   01123345667


Q ss_pred             eecCCCCCcEEEE-eeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEee-CCceEEEEeC
Q 025649          173 FSMFGERGKYLIS-GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI  249 (250)
Q Consensus       173 ~~p~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw~~  249 (250)
                      ++   +++++++. +..++.+.+|++......      ............+..++|+| ||++|++++ .++.|++|++
T Consensus       237 ~s---~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~p~~~a~sp-DGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         237 IT---PDGRHLYACDRTASLITVFSVSEDGSV------LSKEGFQPTETQPRGFNVDH-SGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             EC---TTSSEEEEEETTTTEEEEEEECTTSCC------EEEEEEEECSSSCCCEEECT-TSSEEEEECTTTCEEEEEEE
T ss_pred             Ee---cccCceeeecccCCeEEEEEEcCCCCE------EEEEEEeCCCCCeeEEEEeC-CCCEEEEEECCCCeEEEEEE
Confidence            77   77776554 456789999988765322      12223344556688899998 899876654 5689999964

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=6.2e-19  Score=135.88  Aligned_cols=200  Identities=14%  Similarity=0.086  Sum_probs=137.1

Q ss_pred             EEEcCCCCe-EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC
Q 025649           27 VQFIPWKPW-EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG  105 (250)
Q Consensus        27 l~~~~~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~  105 (250)
                      ..++.+.+. ++++.+.||+|++||+.+++.+.++..+              ..+++++|+|      ||++|++++.|+
T Consensus        24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g--------------~~~~~vafSP------DGk~l~~~~~d~   83 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG--------------YAVHISRMSA------SGRYLLVIGRDA   83 (426)
T ss_dssp             CCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECC--------------SSEEEEEECT------TSCEEEEEETTS
T ss_pred             ccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCC--------------CCeeEEEECC------CCCEEEEEeCCC
Confidence            345555432 4688999999999999999999999844              4689999999      999999999999


Q ss_pred             eEEEEeCCCceeEee--ccC--CCCCCccceeecccceeEEEeee-------eeeccCeeee------------------
Q 025649          106 VVDVINIESELNISR--SKS--TTKPLKGSQSTSKVNIRDAEMEI-------LDQSGGKRLH------------------  156 (250)
Q Consensus       106 ~i~~~d~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~------------------  156 (250)
                      .|++||+.+++....  +..  .+...+.+++|+|||++++..+.       ++........                  
T Consensus        84 ~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (426)
T d1hzua2          84 RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP  163 (426)
T ss_dssp             EEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred             CEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCC
Confidence            999999998764432  221  22245667888999998864322       2211100000                  


Q ss_pred             ---ee-------------------------------ccccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCCCc
Q 025649          157 ---LD-------------------------------YSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQ  201 (250)
Q Consensus       157 ---~~-------------------------------~~~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~~~  201 (250)
                         .+                               .....+...+..++|+   |++++++++. .+..+.+++..++.
T Consensus       164 ~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~a~~~~~~~~~~~~~~~~  240 (426)
T d1hzua2         164 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD---SSHRYFMTAANNSNKVAVIDSKDRR  240 (426)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEEC---TTSCEEEEEETTCSEEEEEETTTTE
T ss_pred             ceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeEC---CCCcEEEeeeecccceeeeeccccc
Confidence               00                               0011234456778888   7888777765 46678888887665


Q ss_pred             ceec---------------------------------------------ccccceeeeeeccCCceeEEEecCCCCCeEE
Q 025649          202 GVQT---------------------------------------------SINNDLLIKNINLNKKVNWLCTTPTESENLV  236 (250)
Q Consensus       202 ~~~~---------------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (250)
                      ....                                             ....+....+.+|...+..++++| |+++|+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l~  319 (426)
T d1hzua2         241 LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLY  319 (426)
T ss_dssp             EEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCT-TCSEEE
T ss_pred             EEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCC-CCceEE
Confidence            4320                                             000134445678889999999998 899888


Q ss_pred             E-------eeCCceEEEEeCC
Q 025649          237 V-------CDTSKVVKVYSIS  250 (250)
Q Consensus       237 s-------~~~d~~i~vw~~~  250 (250)
                      +       ++.|++|+|||+.
T Consensus       320 v~~~~~~s~~~~~tv~vwd~~  340 (426)
T d1hzua2         320 VDTTFNPDARISQSVAVFDLK  340 (426)
T ss_dssp             ECCTTCSSHHHHTCEEEEETT
T ss_pred             EeecCCCCcccCCEEEEEECC
Confidence            4       5568899999963

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=1.4e-17  Score=124.82  Aligned_cols=126  Identities=7%  Similarity=-0.061  Sum_probs=89.3

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEe----------cCCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG----------GLDSKLVMWDFSKGRPNKIVNFGLPENNGN   70 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~----------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~   70 (250)
                      +|.+||..+++++.++. .+..+  .++|+|||+ +|++.          +.|+.|++||+.+++.+..+..+....   
T Consensus        29 ~v~v~D~~tg~~~~~~~-~g~~~--~~a~SpDg~-~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~---  101 (355)
T d2bbkh_          29 QQFVIDGEAGRVIGMID-GGFLP--NPVVADDGS-FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR---  101 (355)
T ss_dssp             EEEEEETTTTEEEEEEE-ECSSC--EEEECTTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC---
T ss_pred             eEEEEECCCCcEEEEEE-CCCCC--ceEEcCCCC-EEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce---
Confidence            37899999999999998 66544  799999999 56543          347899999999999887776441100   


Q ss_pred             CCcccCCCceeEEecCCCcccCCCCCEEEEEe--CCCeEEEEeCCCceeEeeccCCCC------CCccceeecccceeEE
Q 025649           71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKSTTK------PLKGSQSTSKVNIRDA  142 (250)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  142 (250)
                         .........++|+|      ++++++++.  .+..+.+||..+++....+.....      .....+.+++++..+.
T Consensus       102 ---~~~~~~~~~~~~s~------dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~  172 (355)
T d2bbkh_         102 ---FLVGTYPWMTSLTP------DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAK  172 (355)
T ss_dssp             ---CCBSCCGGGEEECT------TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEE
T ss_pred             ---eecCCCCceEEEec------CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEE
Confidence               00112345678898      899887764  567899999999887765544321      2334567888887776

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=1.7e-17  Score=127.83  Aligned_cols=155  Identities=10%  Similarity=0.017  Sum_probs=112.9

Q ss_pred             EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCc
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  115 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  115 (250)
                      ++++.+.||+|.|||..+++.+..+..+              ..++.++|+|      ||+++++++.|+.+++||+.++
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g--------------~~~~~v~fSp------DG~~l~~~s~dg~v~~~d~~t~   93 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG--------------YAVHISRLSA------SGRYLFVIGRDGKVNMIDLWMK   93 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS--------------SCEEEEEECT------TSCEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC--------------CCeeEEEECC------CCCEEEEEcCCCCEEEEEeeCC
Confidence            4699999999999999999999999855              4689999999      9999999999999999999875


Q ss_pred             eeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEE-EEeeCCCeEEE
Q 025649          116 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKV  194 (250)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l-~s~~~d~~i~i  194 (250)
                      +....                                   ..+....+|.+.+.+..|+   |+|++| ++++.++.|++
T Consensus        94 ~~~~~-----------------------------------~~i~~~~~~~~~~~s~~~S---pDG~~l~vs~~~~~~v~i  135 (432)
T d1qksa2          94 EPTTV-----------------------------------AEIKIGSEARSIETSKMEG---WEDKYAIAGAYWPPQYVI  135 (432)
T ss_dssp             SCCEE-----------------------------------EEEECCSEEEEEEECCSTT---CTTTEEEEEEEETTEEEE
T ss_pred             CceEE-----------------------------------EEEecCCCCCCeEEecccC---CCCCEEEEEcCCCCeEEE
Confidence            42211                                   1122334455666667777   899976 67888999999


Q ss_pred             EecCCCcceeccccc--ceeeeeeccCCceeEEEecCCCCCe-EEEeeCCceEEEEeC
Q 025649          195 WDCSRFQGVQTSINN--DLLIKNINLNKKVNWLCTTPTESEN-LVVCDTSKVVKVYSI  249 (250)
Q Consensus       195 wd~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~d~~i~vw~~  249 (250)
                      ||..+++........  ........+......+.++| ++.. +++...++.|.+|++
T Consensus       136 ~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~~~~i~~~d~  192 (432)
T d1qksa2         136 MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVKETGKILLVDY  192 (432)
T ss_dssp             EETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEET
T ss_pred             EeCccccceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEEccCCeEEEEEc
Confidence            999998544221100  00011223455567788887 5655 466777899999985

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.73  E-value=8e-15  Score=110.39  Aligned_cols=227  Identities=9%  Similarity=-0.037  Sum_probs=131.4

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEec----------CCCeEEEEEccCCCCccceecCCCCCC---
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG----------LDSKLVMWDFSKGRPNKIVNFGLPENN---   68 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~~~~---   68 (250)
                      |.+||.++++.+.++. .+..+  .++|+|||+ +|++++          .++.|.+||+.+++.+..+..+.....   
T Consensus        49 v~v~D~~tg~~~~~~~-~~~~~--~~a~SpDG~-~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~  124 (373)
T d2madh_          49 QWVLDAGSGSILGHVN-GGFLP--NPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG  124 (373)
T ss_pred             EEEEECCCCCEEEEEe-CCCCc--cEEEcCCCC-EEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEec
Confidence            6789999999999998 76654  799999999 676653          468899999999887665543211000   


Q ss_pred             ----------C-C--------------------CCcccCCCceeEEecCCCcccCCCCC-EEEEEeCCCeEEEEeCCCce
Q 025649           69 ----------G-N--------------------AGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESEL  116 (250)
Q Consensus        69 ----------~-~--------------------~~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~  116 (250)
                                . .                    .....+.....++.++|      +++ .+++.+.|+.+.+||...+.
T Consensus       125 ~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~g~~~~v~~~~dg~~~~~~~~~~~  198 (373)
T d2madh_         125 PYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHP------GAPSTFYLLCAQGGLAKTDHAGGA  198 (373)
T ss_pred             cCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEec------CCCcEEEEEcCCCeEEEEEcCCce
Confidence                      0 0                    00000111223445555      555 45678899999999998876


Q ss_pred             eEeeccCC-----CCCCccceeecccceeEEEe-----eeeeeccCeeeeeeccccCc----------cccEEEEEeec-
Q 025649          117 NISRSKST-----TKPLKGSQSTSKVNIRDAEM-----EILDQSGGKRLHLDYSVGGH----------TAAASCVAFSM-  175 (250)
Q Consensus       117 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~h----------~~~v~~~~~~p-  175 (250)
                      ........     .........+++++.++...     ..++.... ..........+          ......++++| 
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  277 (373)
T d2madh_         199 AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA-GATNKAPIDALSGGRKADTWRPGGWQQVAYLKS  277 (373)
T ss_pred             eeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCC-eEEEEEeeccccCcEEeeeeccCcceeeEEecC
Confidence            55433221     11222334445555444321     01111110 00001111111          11122334441 


Q ss_pred             ------CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCe--EEEeeCCceEEEE
Q 025649          176 ------FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN--LVVCDTSKVVKVY  247 (250)
Q Consensus       176 ------~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l~s~~~d~~i~vw  247 (250)
                            ....+..+++...++.+.+||..++         +.+. ...+...+..++|+| ||+.  +++++.|+.|++|
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~---------~~~~-~~~~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~  346 (373)
T d2madh_         278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------QTSS-QISLGHDVDAISVAQ-DGGPDLYALSAGTEVLHIY  346 (373)
T ss_pred             CCeEEEecCCCceEEeecCCCeEEEEECCCC---------cEEE-EecCCCCeeEEEECC-CCCEEEEEEeCCCCeEEEE
Confidence                  0023344556667788999999997         3333 345667889999998 8873  4678999999999


Q ss_pred             eCC
Q 025649          248 SIS  250 (250)
Q Consensus       248 ~~~  250 (250)
                      |+.
T Consensus       347 D~~  349 (373)
T d2madh_         347 DAG  349 (373)
T ss_pred             ECC
Confidence            974

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.71  E-value=3.2e-15  Score=109.04  Aligned_cols=177  Identities=14%  Similarity=0.139  Sum_probs=126.9

Q ss_pred             EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE-EEEeCCCeEEEEeCCC
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIES  114 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~  114 (250)
                      .+++++.|++|.+||+.+++.++++..+              .....++++|      +|++| ++++.++.|++||+.+
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~g--------------~~p~~va~sp------dG~~l~v~~~~~~~i~v~d~~t   63 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATIPVG--------------SNPMGAVISP------DGTKVYVANAHSNDVSIIDTAT   63 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECS--------------SSEEEEEECT------TSSEEEEEEGGGTEEEEEETTT
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEECC--------------CCceEEEEeC------CCCEEEEEECCCCEEEEEECCC
Confidence            4567889999999999999999888854              4578999999      99977 5667889999999999


Q ss_pred             ceeEeeccCCCCCCccceeecccceeEEEeeeee----eccCeeeeeeccccCccccEEEEEeecCCCCCcEEE-EeeCC
Q 025649          115 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI-SGGND  189 (250)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~-s~~~d  189 (250)
                      ++....+...  .....+.+++++..++..+..+    .......+....+..+ ....++.|+   |+++.++ ++..+
T Consensus        64 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~dg~~~~~~~~~~  137 (301)
T d1l0qa2          64 NNVIATVPAG--SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS---PDGKKLYVTNNGD  137 (301)
T ss_dssp             TEEEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEEC---TTSSEEEEEETTT
T ss_pred             Cceeeeeecc--ccccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEee---cCCCeeeeeeccc
Confidence            9888777655  4568899999998877433211    1122223333444433 456889999   8888765 55668


Q ss_pred             CeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC-CceEEEEeC
Q 025649          190 KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT-SKVVKVYSI  249 (250)
Q Consensus       190 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~vw~~  249 (250)
                      +.+.+|+..+.         .... ...+...+..++++| ++..+++++. ++.+.+|+.
T Consensus       138 ~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  187 (301)
T d1l0qa2         138 KTVSVINTVTK---------AVIN-TVSVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDT  187 (301)
T ss_dssp             TEEEEEETTTT---------EEEE-EEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEET
T ss_pred             cceeeeecccc---------ceee-ecccCCCceEEEeec-cccceeeecccccccccccc
Confidence            89999999996         3332 334445677888987 6666666554 466666653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=6.1e-15  Score=111.11  Aligned_cols=218  Identities=9%  Similarity=-0.041  Sum_probs=134.1

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEe----------cCCCeEEEEEccCCCCccceecCCCCCCCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG----------GLDSKLVMWDFSKGRPNKIVNFGLPENNGNA   71 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~----------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~   71 (250)
                      |.+||..+++.+..+. ++..+  .++|+|||+ .|+..          +.|++|++||..+++.+..+..+.....   
T Consensus        48 ~~~~d~~~~~~~~~~~-~~~~~--~~a~spDg~-~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~---  120 (368)
T d1mdah_          48 NWVSCAGCGVTLGHSL-GAFLS--LAVAGHSGS-DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF---  120 (368)
T ss_dssp             EEEEETTTTEEEEEEE-ECTTC--EEEECTTSS-CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC---
T ss_pred             EEEEeCCCCcEEEEEe-CCCCC--cceECCCCC-EEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcccee---
Confidence            5677999999999888 66654  589999998 56653          4578899999999998887764311000   


Q ss_pred             CcccCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCCCceeEeeccCCCC------CCccceeecccceeEEEe
Q 025649           72 GQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTK------PLKGSQSTSKVNIRDAEM  144 (250)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  144 (250)
                         ........++|+|      ||++|+++. .++.+.+||+.+++.......+..      .....+.+++||..+.. 
T Consensus       121 ---~~g~~p~~~a~Sp------DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~-  190 (368)
T d1mdah_         121 ---SVGPRVHIIGNCA------SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAAS-  190 (368)
T ss_dssp             ---CBSCCTTSEEECT------TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEE-
T ss_pred             ---cccCCccceEECC------CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEE-
Confidence               0111234688998      999998775 579999999999887665544321      12233455666665542 


Q ss_pred             eeeeecc------------------------------------------CeeeeeeccccCc----------cccEEEEE
Q 025649          145 EILDQSG------------------------------------------GKRLHLDYSVGGH----------TAAASCVA  172 (250)
Q Consensus       145 ~~~~~~~------------------------------------------~~~~~~~~~~~~h----------~~~v~~~~  172 (250)
                      ...+...                                          ......+.....+          ......++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a  270 (368)
T d1mdah_         191 DLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA  270 (368)
T ss_dssp             ECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred             EecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEE
Confidence            1000000                                          0000000011110          01123466


Q ss_pred             eecCCCCCcEEEEeeCC---------CeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC-e-EEEeeCC
Q 025649          173 FSMFGERGKYLISGGND---------KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-N-LVVCDTS  241 (250)
Q Consensus       173 ~~p~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~-l~s~~~d  241 (250)
                      ++   +++..++....+         ..|.+||..+++         .+.. ..+...+..++|+| ||+ + ++++..|
T Consensus       271 ~~---~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~---------~~~~-~~~~~~~~~~a~sp-DG~~~ly~s~~~~  336 (368)
T d1mdah_         271 KL---KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---------TSGP-ISNGHDSDAIIAAQ-DGASDNYANSAGT  336 (368)
T ss_dssp             EE---TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---------EEEC-CEEEEEECEEEECC-SSSCEEEEEETTT
T ss_pred             Ec---CCCCEEEEEecCCCceeecCCceEEEEECCCCc---------EeEE-ecCCCceeEEEECC-CCCEEEEEEeCCC
Confidence            77   666655543221         358899999973         3222 23445788999998 776 3 4667789


Q ss_pred             ceEEEEeCC
Q 025649          242 KVVKVYSIS  250 (250)
Q Consensus       242 ~~i~vw~~~  250 (250)
                      +.|++||..
T Consensus       337 ~~v~v~D~~  345 (368)
T d1mdah_         337 EVLDIYDAA  345 (368)
T ss_dssp             TEEEEEESS
T ss_pred             CeEEEEECC
Confidence            999999963

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.66  E-value=2.3e-14  Score=106.40  Aligned_cols=99  Identities=11%  Similarity=-0.019  Sum_probs=80.5

Q ss_pred             EEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE-EEEeCCC
Q 025649           27 VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDG  105 (250)
Q Consensus        27 l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l-~~~~~d~  105 (250)
                      ++|+++++ +|++++.|++|.+||+.+++.+.+++.+            +.....+++|+|      ||+++ ++++.++
T Consensus         2 ~a~~~~~~-~l~~~~~~~~v~v~D~~t~~~~~t~~~~------------~~~~p~~l~~sp------DG~~l~v~~~~~~   62 (346)
T d1jmxb_           2 PALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMP------------DKFGPGTAMMAP------DNRTAYVLNNHYG   62 (346)
T ss_dssp             CCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEECS------------SCCSSCEEEECT------TSSEEEEEETTTT
T ss_pred             ccCCCCCc-EEEEEcCCCEEEEEECCCCCEEEEEEcC------------CCCCcceEEECC------CCCEEEEEECCCC
Confidence            57899999 9999999999999999999999888754            345578999999      99987 5556889


Q ss_pred             eEEEEeCCCceeEeeccCCCC-----CCccceeecccceeEEEe
Q 025649          106 VVDVINIESELNISRSKSTTK-----PLKGSQSTSKVNIRDAEM  144 (250)
Q Consensus       106 ~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  144 (250)
                      .|.+||+.+++..........     ..+..++++|||++++..
T Consensus        63 ~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~  106 (346)
T d1jmxb_          63 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYAT  106 (346)
T ss_dssp             EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEE
T ss_pred             cEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEE
Confidence            999999999988766544322     246689999999988743

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=3e-15  Score=110.86  Aligned_cols=146  Identities=14%  Similarity=0.126  Sum_probs=102.9

Q ss_pred             EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE-EEEeCCCeEEEEeCCC
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIES  114 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~  114 (250)
                      +|++++.|++|++||+.+++.+..+..+.           +...+.+++++|      +|+++ ++++.++.|.+||+.+
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~-----------~~~~~~~i~~sp------Dg~~l~v~~~~~~~v~v~D~~t   65 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIAD-----------AGPTPMVPMVAP------GGRIAYATVNKSESLVKIDLVT   65 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTT-----------CTTCCCCEEECT------TSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCC-----------CCCCccEEEECC------CCCEEEEEECCCCeEEEEECCC
Confidence            89999999999999999999988887541           224567899999      99987 5667899999999999


Q ss_pred             ceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEee-------
Q 025649          115 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-------  187 (250)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~-------  187 (250)
                      ++..........                                   ..+...+..++|+   |+++++++++       
T Consensus        66 ~~~~~~~~~~~~-----------------------------------~~~~~~~~~v~~s---~dg~~l~~~~~~~~~~~  107 (337)
T d1pbyb_          66 GETLGRIDLSTP-----------------------------------EERVKSLFGAALS---PDGKTLAIYESPVRLEL  107 (337)
T ss_dssp             CCEEEEEECCBT-----------------------------------TEEEECTTCEEEC---TTSSEEEEEEEEEEECS
T ss_pred             CcEEEEEecCCC-----------------------------------cccccceeeEEEc---CCCcEEEEeecCCccee
Confidence            887665443310                                   0111122345555   5555554443       


Q ss_pred             -----CCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          188 -----NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       188 -----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                           .+..+.+||..++         ..... ..+...+..++++| +++++++++.+  +.+||.
T Consensus       108 ~~~~~~~~~~~~~d~~~~---------~~~~~-~~~~~~~~~~~~s~-dg~~l~~~~~~--~~~~d~  161 (337)
T d1pbyb_         108 THFEVQPTRVALYDAETL---------SRRKA-FEAPRQITMLAWAR-DGSKLYGLGRD--LHVMDP  161 (337)
T ss_dssp             SCEEECCCEEEEEETTTT---------EEEEE-EECCSSCCCEEECT-TSSCEEEESSS--EEEEET
T ss_pred             eeccccccceeeccccCC---------eEEEe-ccccCCceEEEEcC-CCCEEEEEcCC--cceeee
Confidence                 4678889999986         33333 33456678899997 89999888765  566775

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.3e-13  Score=101.91  Aligned_cols=189  Identities=10%  Similarity=0.005  Sum_probs=120.5

Q ss_pred             EEEEecCCCeEEEEEccCCCCcccee-cCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe-CCCeEEEEeCC
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVN-FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIE  113 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~  113 (250)
                      .+++++.|++|++|++.+...+..++ .+            ++..+..++|+|      ||++|++++ .|+.|++|++.
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~------------~~~~v~~la~sp------DG~~L~v~~~~d~~i~~~~i~   67 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVD------------VPGQVQPMVVSP------DKRYLYVGVRPEFRVLAYRIA   67 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEE------------CSSCCCCEEECT------TSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEc------------CCCCEeEEEEeC------CCCEEEEEECCCCeEEEEEEe
Confidence            56888999999999997654433332 11            567889999999      999886555 58999999997


Q ss_pred             CceeE--eeccCCCCCCccceeecccceeEEEeeeeeec------cCeeeeeeccccCccccEEEEEeecCCCCCcEEEE
Q 025649          114 SELNI--SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS------GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS  185 (250)
Q Consensus       114 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s  185 (250)
                      .....  ..........+..++++|||++++.....+..      .............+...+.++.++   |++++++.
T Consensus        68 ~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s---~d~~~~~~  144 (333)
T d1ri6a_          68 PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS---PDNRTLWV  144 (333)
T ss_dssp             TTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC---TTSSEEEE
T ss_pred             CCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEee---ecceeeec
Confidence            64322  22222233556789999999999853321211      111112222334456667889999   89998887


Q ss_pred             eeC-CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEE-eeCCceEEEEeC
Q 025649          186 GGN-DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV-CDTSKVVKVYSI  249 (250)
Q Consensus       186 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d~~i~vw~~  249 (250)
                      ++. +..|.+|+..........   ............+..++|++ ++..++. ....+...+|++
T Consensus       145 ~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~g~~p~~i~~~~-~~~~~~~~~~~~~~~~v~~~  206 (333)
T d1ri6a_         145 PALKQDRICLFTVSDDGHLVAQ---DPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWEL  206 (333)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEE---EEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEES
T ss_pred             cccccceeeEEEeccCCcceee---eceeeeeecCCCccEEEEec-cceeEEeeccccCceEEEee
Confidence            764 568999998775332110   11112233445677888987 5655544 446667777764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.56  E-value=8.2e-13  Score=99.22  Aligned_cols=199  Identities=12%  Similarity=-0.057  Sum_probs=125.7

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEe----cCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCC
Q 025649           19 GHSSICSSVQFIPWKPWEVISG----GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT   94 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~----s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (250)
                      .+..++..++++|+++..+++.    +.++.|.+||..+++.+..+..+               ....++|+|      |
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~---------------~~~~~a~Sp------D   76 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG---------------FLPNPVAAH------S   76 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC---------------CCccEEEcC------C
Confidence            6788999999999999433331    34567999999999998887644               223689999      9


Q ss_pred             CCEEEEEe----------CCCeEEEEeCCCceeEeeccCCCC------CCccceeecccceeEEEeeeeeeccCeee--e
Q 025649           95 NKICVVAK----------GDGVVDVINIESELNISRSKSTTK------PLKGSQSTSKVNIRDAEMEILDQSGGKRL--H  156 (250)
Q Consensus        95 ~~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  156 (250)
                      |++|+++.          .++.|.+||+.+++....+..+..      .....+.++++++.+. +..++.......  .
T Consensus        77 G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~-v~~~~~~~~~~~~~~  155 (373)
T d2madh_          77 GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLL-FFQFAAGPAVGLVVQ  155 (373)
T ss_pred             CCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEE-EEEEcCCCceEEeec
Confidence            99998875          457899999999988766554432      2235678999998876 322222111000  0


Q ss_pred             eeccccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCCcceecccccceeeeee--ccCCceeEEEecCCCCC
Q 025649          157 LDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPTESE  233 (250)
Q Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~  233 (250)
                      .......+.....++.++   |+|+ .+++.+.|+.+.+||...+.....     ......  ........+.+.+ ++ 
T Consensus       156 ~~~~~~~~~~~~~~~~~s---~~g~~~~v~~~~dg~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~-  225 (373)
T d2madh_         156 GGSSDDQLLSSPTCYHIH---PGAPSTFYLLCAQGGLAKTDHAGGAAGAG-----LVGAMLTAAQNLLTQPAQANK-SG-  225 (373)
T ss_pred             cCCeEEEEeccceeEEEe---cCCCcEEEEEcCCCeEEEEEcCCceeeEE-----EeeeccccCccceeeeEEECC-Cc-
Confidence            001122334456788899   6766 456788899999999988743311     000011  1111122333433 44 


Q ss_pred             eEEEeeCCceEEEEeC
Q 025649          234 NLVVCDTSKVVKVYSI  249 (250)
Q Consensus       234 ~l~s~~~d~~i~vw~~  249 (250)
                      .++..+.++.+.+|+.
T Consensus       226 ~~~~~~~~~~v~~~~~  241 (373)
T d2madh_         226 RIVWPVYSGKILQADI  241 (373)
T ss_pred             eEEEecCCceEEEEEc
Confidence            4556667888888874

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.52  E-value=2.2e-12  Score=97.60  Aligned_cols=223  Identities=10%  Similarity=0.023  Sum_probs=143.5

Q ss_pred             CcEEEEcccceeeeeecc-----------------------------CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEc
Q 025649            1 MWQIIDIRQHCLYKSLRA-----------------------------GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDF   51 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~-----------------------------~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~   51 (250)
                      +|++||+.+++.++++..                             .|........++|||++++++...+++|.++|+
T Consensus        22 ~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl  101 (441)
T d1qnia2          22 EVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRL  101 (441)
T ss_dssp             CEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEET
T ss_pred             cEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCCEEEEEEC
Confidence            478999999988877641                             133344555568999966677788999999999


Q ss_pred             cCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCC--EEEEEeCCC-----------------eEEEEeC
Q 025649           52 SKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK--ICVVAKGDG-----------------VVDVINI  112 (250)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~l~~~~~d~-----------------~i~~~d~  112 (250)
                      .+++....+..+            .....+.++|+|      +++  +++..+.+.                 .+..+|.
T Consensus       102 ~t~k~~~ii~iP------------~g~gphgi~~sp------dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~  163 (441)
T d1qnia2         102 DIMKTDKITHIP------------NVQAIHGLRLQK------VPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA  163 (441)
T ss_dssp             TTTEEEEEEECT------------TCCCEEEEEECC------SSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred             CCCcEeeEEecC------------CCCCccceEEec------cCCEEEEEeccCCcccccCcccccccccccceEEeecC
Confidence            999888777654            346789999998      777  444444332                 2355788


Q ss_pred             CCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc-----------------------------------------
Q 025649          113 ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG-----------------------------------------  151 (250)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------  151 (250)
                      .+.+...++...  .....+.++|+|++++... .+...                                         
T Consensus       164 ~t~~v~~qI~v~--~~p~~v~~spdGk~a~vt~-~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~  240 (441)
T d1qnia2         164 ETMDVAWQVIVD--GNLDNTDADYTGKYATSTC-YNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVP  240 (441)
T ss_dssp             TTCSEEEEEEES--SCCCCEEECSSSSEEEEEE-SCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCC
T ss_pred             ccceeeEEEecC--CCccceEECCCCCEEEEEe-cCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcE
Confidence            877666555443  4678899999999887322 11100                                         


Q ss_pred             ----CeeeeeeccccCccccEEEEEeecCCCCCcEEE-EeeCCCeEEEEecCCCcceec--ccccceeeeeeccCCceeE
Q 025649          152 ----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQGVQT--SINNDLLIKNINLNKKVNW  224 (250)
Q Consensus       152 ----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~v~~  224 (250)
                          ......+..+...+. ...+.++   |+|++++ ++..+++|.+||+.+......  ......+.......-....
T Consensus       241 vvd~~~~~~v~~~IPvgks-PhGv~vS---PDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh  316 (441)
T d1qnia2         241 VVDGRGESEFTRYIPVPKN-PHGLNTS---PDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLH  316 (441)
T ss_dssp             EEECSSSCSSEEEECCBSS-CCCEEEC---TTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEE
T ss_pred             EEEcccCCceEEEEeCCCC-ccCceEC---CCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccc
Confidence                001111222333322 4678889   8999875 567799999999987543210  0000111111122223455


Q ss_pred             EEecCCCCCeEEEeeCCceEEEEeC
Q 025649          225 LCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       225 ~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .+|.+ +|..+.+...|..|..|++
T Consensus       317 ~~fd~-~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         317 TTFDG-RGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             EEECS-SSEEEEEETTTTEEEEEEH
T ss_pred             ceecC-CceEEEcccccceEEEecc
Confidence            57886 7877888889999999985

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=2e-12  Score=96.28  Aligned_cols=206  Identities=9%  Similarity=-0.084  Sum_probs=124.7

Q ss_pred             cEEEEcccceeeeeeccCCC-------CCeeeEEEcCCCCeEEEEe--cCCCeEEEEEccCCCCccceecCCCCC-----
Q 025649            2 WQIIDIRQHCLYKSLRAGHS-------SICSSVQFIPWKPWEVISG--GLDSKLVMWDFSKGRPNKIVNFGLPEN-----   67 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~-------~~v~~l~~~~~~~~~l~s~--s~dg~v~iwd~~~~~~~~~~~~~~~~~-----   67 (250)
                      |++||+.+++.+..+. .+.       .....++|+|+++ .++.+  +.+..+.+|+..+++.+..+..+....     
T Consensus        80 v~v~D~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA  157 (355)
T ss_dssp             EEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred             EEEEECCCCCEEEEEe-cCCcceeecCCCCceEEEecCCC-eeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecC
Confidence            7899999999888775 332       2346789999998 45444  556789999999887666554321000     


Q ss_pred             -------------------CC--------CCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEee
Q 025649           68 -------------------NG--------NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  120 (250)
Q Consensus        68 -------------------~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  120 (250)
                                         ..        ......+...+....+.+      ++..++.++.++.+.+|++..+.....
T Consensus       158 ~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~  231 (355)
T d2bbkh_         158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ------KAGRLVWPTYTGKIHQIDLSSGDAKFL  231 (355)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET------TTTEEEEEBTTSEEEEEECTTSSCEEC
T ss_pred             CcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccC------CCCeEEEecCCCeEEEEecCCCcEEEE
Confidence                               00        000000111122223333      677888889999999999988654322


Q ss_pred             ccC--C---------CCCCccceeecccceeEEEeeee-------------eeccCeeeeeeccccCccccEEEEEeecC
Q 025649          121 SKS--T---------TKPLKGSQSTSKVNIRDAEMEIL-------------DQSGGKRLHLDYSVGGHTAAASCVAFSMF  176 (250)
Q Consensus       121 ~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~h~~~v~~~~~~p~  176 (250)
                      ...  .         .......+++++++..++.....             ..++....+.+..+. +...+.+++|+  
T Consensus       232 ~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~s--  308 (355)
T d2bbkh_         232 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVS--  308 (355)
T ss_dssp             CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEEC--
T ss_pred             eccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEc--
Confidence            110  0         01234557888888877632111             111122223333443 33557899999  


Q ss_pred             CCCCc--EEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec
Q 025649          177 GERGK--YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT  228 (250)
Q Consensus       177 ~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  228 (250)
                       |+|+  ++++++.|+.|++||++++         +.+..+.++......+...
T Consensus       309 -pDG~~~l~v~~~~d~~i~v~D~~tg---------~~~~~i~~~G~~p~~i~~~  352 (355)
T d2bbkh_         309 -QDEKPLLYALSTGDKTLYIHDAESG---------EELRSVNQLGHGPQVITTA  352 (355)
T ss_dssp             -CSSSCEEEEEETTTTEEEEEETTTC---------CEEEEECCCCSSCCEEECC
T ss_pred             -CCCCeEEEEEECCCCEEEEEECCCC---------CEEEEEeCcCCCccEEEeC
Confidence             8887  4567778999999999998         5666666665555555443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.48  E-value=1.4e-11  Score=95.47  Aligned_cols=121  Identities=7%  Similarity=-0.137  Sum_probs=89.7

Q ss_pred             CcEEEEcccceeeeeec----cCCCCCeeeEEEcCCCCeEEEEec---------CCCeEEEEEccCCCCccceecCCCCC
Q 025649            1 MWQIIDIRQHCLYKSLR----AGHSSICSSVQFIPWKPWEVISGG---------LDSKLVMWDFSKGRPNKIVNFGLPEN   67 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~----~~h~~~v~~l~~~~~~~~~l~s~s---------~dg~v~iwd~~~~~~~~~~~~~~~~~   67 (250)
                      +|.+||+.+++....+.    ..|...|.++.|||||+ +|+.++         .++.+.+||+.+++... +..     
T Consensus        37 ~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~-~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~-l~~-----  109 (470)
T d2bgra1          37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EER-----  109 (470)
T ss_dssp             CEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSC-----
T ss_pred             cEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCC-EEEEEECCcceeeeccCceEEEEECCCCcccc-ccc-----
Confidence            47899999998765443    05567899999999999 677764         35788999999876443 321     


Q ss_pred             CCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCC-----------------CCCCcc
Q 025649           68 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-----------------TKPLKG  130 (250)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----------------~~~~~~  130 (250)
                              ++..+..+.|+|      +|+.+|.. .++.+.+|+..++.........                 ......
T Consensus       110 --------~~~~~~~~~~SP------DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~  174 (470)
T d2bgra1         110 --------IPNNTQWVTWSP------VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (470)
T ss_dssp             --------CCTTEEEEEECS------STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             --------CCcccccccccc------CcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence                    467889999999      99999986 5678999999987765433221                 112345


Q ss_pred             ceeecccceeEEE
Q 025649          131 SQSTSKVNIRDAE  143 (250)
Q Consensus       131 ~~~~~~~~~~~~~  143 (250)
                      .+.|+|||+.++.
T Consensus       175 ~~~wSPDGk~ia~  187 (470)
T d2bgra1         175 ALWWSPNGTFLAY  187 (470)
T ss_dssp             CEEECTTSSEEEE
T ss_pred             ccEECCCCCccce
Confidence            5779999999984

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.35  E-value=6.1e-12  Score=95.17  Aligned_cols=213  Identities=12%  Similarity=-0.078  Sum_probs=129.8

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeE------------------EEEEccCCCCccceec
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL------------------VMWDFSKGRPNKIVNF   62 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v------------------~iwd~~~~~~~~~~~~   62 (250)
                      +|.++|+.+++..+.+...+...+..++|+|+++...+++..+..+                  ..+|..+.+....+..
T Consensus        95 rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v  174 (441)
T d1qnia2          95 RVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV  174 (441)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE
T ss_pred             EEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEec
Confidence            3678999999988876634677899999999997444444333333                  4467777666665553


Q ss_pred             CCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC--------------------------------------
Q 025649           63 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD--------------------------------------  104 (250)
Q Consensus        63 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d--------------------------------------  104 (250)
                      +              .....++++|      +|+++++.+.+                                      
T Consensus       175 ~--------------~~p~~v~~sp------dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v  234 (441)
T d1qnia2         175 D--------------GNLDNTDADY------TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTI  234 (441)
T ss_dssp             S--------------SCCCCEEECS------SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCC
T ss_pred             C--------------CCccceEECC------CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEe
Confidence            3              3456777887      78877766543                                      


Q ss_pred             ---CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc----Ceee--------eeeccccCc---cc
Q 025649          105 ---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRL--------HLDYSVGGH---TA  166 (250)
Q Consensus       105 ---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------~~~~~~~~h---~~  166 (250)
                         +.+.+++.........+...  .....+.++|||++++..+..+...    ...+        .....+.++   .-
T Consensus       235 ~~~~v~vvd~~~~~~v~~~IPvg--ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl  312 (441)
T d1qnia2         235 GDSKVPVVDGRGESEFTRYIPVP--KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL  312 (441)
T ss_dssp             TTCCCCEEECSSSCSSEEEECCB--SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS
T ss_pred             CCCCcEEEEcccCCceEEEEeCC--CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccccc
Confidence               33444444433333333332  4567899999999998544332221    1110        000111111   11


Q ss_pred             cEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceec-ccccceeee-----eeccCCceeEEEecCCCCCeEEEee
Q 025649          167 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT-SINNDLLIK-----NINLNKKVNWLCTTPTESENLVVCD  239 (250)
Q Consensus       167 ~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~s~~  239 (250)
                      .....+|.   ++|+.+.+.+.|..|..|++........ ......+..     ..+|...+.+..++| ||++|++++
T Consensus       313 gplh~~fd---~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p-dGk~l~s~~  387 (441)
T d1qnia2         313 GPLHTTFD---GRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA-DGKWLVVLS  387 (441)
T ss_dssp             CEEEEEEC---SSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC-CCCEEEEEE
T ss_pred             Ccccceec---CCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCC-CCcEEEecC
Confidence            23445788   8898888999999999999853211000 000122222     257888888888887 999999993

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.33  E-value=1e-10  Score=87.61  Aligned_cols=189  Identities=4%  Similarity=-0.104  Sum_probs=105.0

Q ss_pred             CcEEEEcccceeeeeeccCCCC-------CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCC-----
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSS-------ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENN-----   68 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~-------~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~-----   68 (250)
                      +|++||..+++.+..+. .+..       ....++|+|||+.++++...++.+.+||+.+++....+..+.....     
T Consensus        97 ~v~v~D~~t~~~~~~i~-~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~  175 (368)
T d1mdah_          97 YVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAA  175 (368)
T ss_dssp             EEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEET
T ss_pred             eEEEEECCCCcEeeeec-CCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCC
Confidence            38899999999988876 4432       2347999999994444445689999999998887666553310000     


Q ss_pred             --------CCC-------------------CcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec
Q 025649           69 --------GNA-------------------GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS  121 (250)
Q Consensus        69 --------~~~-------------------~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  121 (250)
                              ...                   ....+...+....+.+      ++..+.+  ..+.+.+++...+......
T Consensus       176 ~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~--~~~~v~~~~~~~~~~~~~~  247 (368)
T d1mdah_         176 ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY------PGMLVWA--VASSILQGDIPAAGATMKA  247 (368)
T ss_dssp             TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT------TTEEEEC--BSSCCEEEECCSSCCEEEC
T ss_pred             ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc------CcEEEEe--cCCCEEEEeecCCceEEEe
Confidence                    000                   0000000111112221      3333332  3345566666554433221


Q ss_pred             cCC-----------CCCCccceeecccceeEEEeeee------------eeccCeeeeeeccccCccccEEEEEeecCCC
Q 025649          122 KST-----------TKPLKGSQSTSKVNIRDAEMEIL------------DQSGGKRLHLDYSVGGHTAAASCVAFSMFGE  178 (250)
Q Consensus       122 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  178 (250)
                      ...           .......+++++++..++.....            ...+....+.+..+. +...+.+++|+   |
T Consensus       248 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~s---p  323 (368)
T d1mdah_         248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAA---Q  323 (368)
T ss_dssp             CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEEC---C
T ss_pred             ecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEEC---C
Confidence            111           01223457788887766532111            111222333444444 34568889999   8


Q ss_pred             CCc--EEEEeeCCCeEEEEecCCCcc
Q 025649          179 RGK--YLISGGNDKLVKVWDCSRFQG  202 (250)
Q Consensus       179 ~~~--~l~s~~~d~~i~iwd~~~~~~  202 (250)
                      +|+  +++++..|+.|++||..+++.
T Consensus       324 DG~~~ly~s~~~~~~v~v~D~~tgk~  349 (368)
T d1mdah_         324 DGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             SSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             CCCEEEEEEeCCCCeEEEEECCCCCE
Confidence            986  356777899999999999843

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.33  E-value=1.4e-11  Score=95.50  Aligned_cols=161  Identities=9%  Similarity=0.049  Sum_probs=108.7

Q ss_pred             eeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC-
Q 025649           25 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-  103 (250)
Q Consensus        25 ~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-  103 (250)
                      ..+.|.++++ ++..  .|+.+.+||+.+++....+...        .+..+...|.++.|+|      |+++|+.++. 
T Consensus        20 ~~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~~~~~--------~~~~~~~~i~~~~~Sp------Dg~~i~~~~~~   82 (470)
T d2bgra1          20 YSLRWISDHE-YLYK--QENNILVFNAEYGNSSVFLENS--------TFDEFGHSINDYSISP------DGQFILLEYNY   82 (470)
T ss_dssp             CCCEECSSSE-EEEE--SSSCEEEEETTTCCEEEEECTT--------TTTTSSSCCCEEEECT------TSSEEEEEEEE
T ss_pred             cCCEeCCCCE-EEEE--cCCcEEEEECCCCCEEEEEchh--------hhhhccCccceeEECC------CCCEEEEEECC
Confidence            4688999997 6654  4678999999999875544311        2223456789999999      9999998853 


Q ss_pred             --------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeec
Q 025649          104 --------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM  175 (250)
Q Consensus       104 --------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  175 (250)
                              ++.+.+||+.+++.                                         ..+..|...+..+.|| 
T Consensus        83 ~~~~r~s~~~~~~l~d~~~~~~-----------------------------------------~~l~~~~~~~~~~~~S-  120 (470)
T d2bgra1          83 VKQWRHSYTASYDIYDLNKRQL-----------------------------------------ITEERIPNNTQWVTWS-  120 (470)
T ss_dssp             EECSSSCEEEEEEEEETTTTEE-----------------------------------------CCSSCCCTTEEEEEEC-
T ss_pred             cceeeeccCceEEEEECCCCcc-----------------------------------------cccccCCccccccccc-
Confidence                    46778888886542                                         2455677788999999 


Q ss_pred             CCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee---------ccCCceeEEEecCCCCCeEEEeeCCce-EE
Q 025649          176 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI---------NLNKKVNWLCTTPTESENLVVCDTSKV-VK  245 (250)
Q Consensus       176 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~s~~~d~~-i~  245 (250)
                        |+|+.+|... ++.+++|+..++...+.......-..+.         ...+....+.|+| ||+.|+....|.. +.
T Consensus       121 --PDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d~~~v~  196 (470)
T d2bgra1         121 --PVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVP  196 (470)
T ss_dssp             --SSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCC
T ss_pred             --cCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC-CCCccceeEecCCcCc
Confidence              8999999864 7799999999875442111100000011         1223345677987 9999998765433 44


Q ss_pred             EEe
Q 025649          246 VYS  248 (250)
Q Consensus       246 vw~  248 (250)
                      .|.
T Consensus       197 ~~~  199 (470)
T d2bgra1         197 LIE  199 (470)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.17  E-value=1.5e-08  Score=73.59  Aligned_cols=206  Identities=7%  Similarity=-0.049  Sum_probs=129.7

Q ss_pred             cccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecC
Q 025649            7 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIP   86 (250)
Q Consensus         7 ~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   86 (250)
                      +...+.+..+. . ...+..++++|+|+ ++++...+++|..|+.. ++......              ....+.++++.
T Consensus        15 ~~~~~v~~~~p-~-~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~-g~~~~~~~--------------~~~~~~gla~~   76 (302)
T d2p4oa1          15 LAPAKIITSFP-V-NTFLENLASAPDGT-IFVTNHEVGEIVSITPD-GNQQIHAT--------------VEGKVSGLAFT   76 (302)
T ss_dssp             CCCEEEEEEEC-T-TCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEEEE--------------CSSEEEEEEEC
T ss_pred             CCcccEEEECC-C-CCCcCCEEECCCCC-EEEEeCCCCEEEEEeCC-CCEEEEEc--------------CCCCcceEEEc
Confidence            34556666676 2 23688999999999 89999999999888865 43322222              34678999999


Q ss_pred             CCcccCCCCCEEEEEeCCCeEEEEeCCC--ceeEeeccCCCCCCccceeecccceeEEEee------eeeeccCeeee-e
Q 025649           87 DADMLDKTNKICVVAKGDGVVDVINIES--ELNISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSGGKRLH-L  157 (250)
Q Consensus        87 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~  157 (250)
                      |      +++++++...++.+..++...  +................+.+.++|+++++..      ..+........ .
T Consensus        77 ~------dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~  150 (302)
T d2p4oa1          77 S------NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWL  150 (302)
T ss_dssp             T------TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             C------CCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEe
Confidence            8      999999988888888887654  2222223333345677889999998877411      11111111000 0


Q ss_pred             ------eccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCC
Q 025649          158 ------DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE  231 (250)
Q Consensus       158 ------~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  231 (250)
                            .............+.+.   . +.++++.+..+.|..++........      . ............+++.+ +
T Consensus       151 ~~~~~~~~~~~~~~~~~ngi~~~---~-~~l~~~~~~~~~i~~~~~~~~~~~~------~-~~~~~~~~~pdgia~d~-d  218 (302)
T d2p4oa1         151 EHPMLARSNSESVFPAANGLKRF---G-NFLYVSNTEKMLLLRIPVDSTDKPG------E-PEIFVEQTNIDDFAFDV-E  218 (302)
T ss_dssp             ECGGGSCSSTTCCSCSEEEEEEE---T-TEEEEEETTTTEEEEEEBCTTSCBC------C-CEEEEESCCCSSEEEBT-T
T ss_pred             cCCccceeeccCccccccccccc---C-CceeeecCCCCeEEecccccccccc------c-cccccCCCCCcceEECC-C
Confidence                  00111222345667776   3 4566677778999999887653221      1 11112334466788887 8


Q ss_pred             CCeEEEeeCCceEEEEe
Q 025649          232 SENLVVCDTSKVVKVYS  248 (250)
Q Consensus       232 ~~~l~s~~~d~~i~vw~  248 (250)
                      |.++++...++.|..++
T Consensus       219 G~l~va~~~~~~V~~i~  235 (302)
T d2p4oa1         219 GNLYGATHIYNSVVRIA  235 (302)
T ss_dssp             CCEEEECBTTCCEEEEC
T ss_pred             CCEEEEEcCCCcEEEEC
Confidence            88777777788888775

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.10  E-value=3.3e-08  Score=70.08  Aligned_cols=190  Identities=9%  Similarity=0.039  Sum_probs=113.5

Q ss_pred             CeeeEEEcCCCCeEEEE-ecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           23 ICSSVQFIPWKPWEVIS-GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s-~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      .-.+|++.++|. +.++ .+..+.+..++....... .+...            .......+++.+      +++++++.
T Consensus        15 ~P~~vavd~dG~-i~v~~~~~~~~i~~~~~~~~~~~-~~~~~------------~~~~p~gvav~~------~g~i~v~d   74 (260)
T d1rwia_          15 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTT-VLPFN------------GLYQPQGLAVDG------AGTVYVTD   74 (260)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEEC----CEE-ECCCC------------SCCSCCCEEECT------TCCEEEEE
T ss_pred             CCCEEEEcCCCC-EEEEEcCCCCEEEEEcCCCceEE-EeccC------------CccCceEEEEcC------CCCEEEee
Confidence            347999999998 5554 556677777766433211 11111            112346778887      88888887


Q ss_pred             eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee----eeeccCeeeeeeccccCccccEEEEEeecCC
Q 025649          102 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI----LDQSGGKRLHLDYSVGGHTAAASCVAFSMFG  177 (250)
Q Consensus       102 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  177 (250)
                      ...+.+++++..+.........  ......+++.+++++++....    ................+ ......++++   
T Consensus        75 ~~~~~i~~~~~~~~~~~~~~~~--~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~i~~~---  148 (260)
T d1rwia_          75 FNNRVVTLAAGSNNQTVLPFDG--LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVD---  148 (260)
T ss_dssp             TTTEEEEECTTCSCCEECCCCS--CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS-CCSCCEEEEC---
T ss_pred             eeeceeeeeeeccceeeeeeee--eeecccccccccceeEeeccccccccccccccceeeeeeecc-cCCcceeeec---
Confidence            7777777776665544433222  245678999999887763110    00001111111111122 2345688998   


Q ss_pred             CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          178 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       178 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      ++|+++++...++.|..+|.....         ..............+++.+ ++.++++....+.|..++
T Consensus       149 ~~g~~~v~~~~~~~i~~~d~~~~~---------~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         149 NSGNVYVTDTDNNRVVKLEAESNN---------QVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCC---------EEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEEC
T ss_pred             CCCCEeeeccccccccccccccce---------eeeeeccccCCCccceeee-eeeeeeeecCCCEEEEEe
Confidence            888988888888999999988742         2222223345577888887 777777777777777665

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.07  E-value=1.3e-07  Score=70.44  Aligned_cols=187  Identities=11%  Similarity=0.051  Sum_probs=105.0

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      ..+.++.|+|+|+.++++......|.+|+......+......        ...........++|+|      +++++.+.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~--------~~~~~g~gPr~i~f~p------dg~~~yv~  210 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV--------DAPDPGDHPRWVAMHP------TGNYLYAL  210 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE--------ECSSTTCCEEEEEECT------TSSEEEEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccce--------eecCCCCceEEEEECC------CCceEEEe
Confidence            357899999999944444455668888886543222111100        0000124567899998      89887555


Q ss_pred             -eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCC
Q 025649          102 -KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG  180 (250)
Q Consensus       102 -~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  180 (250)
                       ..+++|.+|+...+.......                     .+..................+......+.++   |+|
T Consensus       211 ~e~~~~V~v~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s---pdG  266 (365)
T d1jofa_         211 MEAGNRICEYVIDPATHMPVYT---------------------HHSFPLIPPGIPDRDPETGKGLYRADVCALT---FSG  266 (365)
T ss_dssp             ETTTTEEEEEEECTTTCCEEEE---------------------EEEEESSCTTCCCBCTTTSSBSEEEEEEEEC---TTS
T ss_pred             ccCCCEEEEEEecCCCceEEEE---------------------eeeeccccccccccccccccccCCccceEEC---CCC
Confidence             468899999987643211100                     0000000000000011222344556788899   899


Q ss_pred             cEEEEeeC------CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEe-eCCceEEEEeC
Q 025649          181 KYLISGGN------DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC-DTSKVVKVYSI  249 (250)
Q Consensus       181 ~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~vw~~  249 (250)
                      ++|+++..      .+.|..|++.........   ..+............++++|.+|++|+++ ..++.|.+|++
T Consensus       267 ~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~---~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         267 KYMFASSRANKFELQGYIAGFKLRDCGSIEKQ---LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             SEEEEEEEESSTTSCCEEEEEEECTTSCEEEE---EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             CEEEEEcccCCCccceEEEEEEecCCCceeeE---eEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            99887642      224777777654222100   11122223345577889988788877665 57799999975

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.04  E-value=1.9e-07  Score=66.11  Aligned_cols=188  Identities=9%  Similarity=-0.047  Sum_probs=117.9

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  102 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  102 (250)
                      ....+++++++. ++++....+.+++++..+...+....              ......++++.+      +++++++-.
T Consensus        58 ~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~~~~~--------------~~~~p~~iavd~------~g~i~v~d~  116 (260)
T d1rwia_          58 QPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVLPFD--------------GLNYPEGLAVDT------QGAVYVADR  116 (260)
T ss_dssp             SCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEECCCC--------------SCCSEEEEEECT------TCCEEEEEG
T ss_pred             CceEEEEcCCCC-EEEeeeeeceeeeeeeccceeeeeee--------------eeeecccccccc------cceeEeecc
Confidence            457899999998 78887777777777655444332222              124567899987      888888777


Q ss_pred             CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee------eeeeccCeeeeeeccccCccccEEEEEeecC
Q 025649          103 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSGGKRLHLDYSVGGHTAAASCVAFSMF  176 (250)
Q Consensus       103 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~  176 (250)
                      .+..+..++........... ........++++++|+.+++..      ..+...  ..... ...........+++.  
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~--~~~~~-~~~~~~~~p~gi~~d--  190 (260)
T d1rwia_         117 GNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES--NNQVV-LPFTDITAPWGIAVD--  190 (260)
T ss_dssp             GGTEEEEECTTCSSCEECCC-CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT--CCEEE-CCCSSCCSEEEEEEC--
T ss_pred             ccccccccccccceeeeeee-cccCCcceeeecCCCCEeeecccccccccccccc--ceeee-eeccccCCCccceee--
Confidence            77778888876644332221 1124556889999988766311      111111  11111 111334556889999  


Q ss_pred             CCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          177 GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       177 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                       ++|+++++....+.|..++.....         ........-..+..|++.+ +|.++++-..++.|+..+
T Consensus       191 -~~g~l~vsd~~~~~i~~~~~~~~~---------~~~~~~~~~~~P~~i~~d~-~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         191 -EAGTVYVTEHNTNQVVKLLAGSTT---------STVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             -TTCCEEEEETTTTEEEEECTTCSC---------CEECCCCSCCCEEEEEECT-TCCEEEEEGGGTEEEEEC
T ss_pred             -eeeeeeeeecCCCEEEEEeCCCCe---------EEEEccCCCCCeEEEEEeC-CCCEEEEECCCCEEEEEe
Confidence             889998888888899888876542         1111112224567899987 787777766677777654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=4.3e-07  Score=64.28  Aligned_cols=207  Identities=10%  Similarity=0.010  Sum_probs=108.9

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEe-cCCC--eEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG-GLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~-s~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |.|-|.. |.....+. .+...+..-+|||||+ .||-. ...+  .+.+.+...+.......              +..
T Consensus        21 l~i~d~d-G~~~~~l~-~~~~~~~sP~wSPDGk-~IAf~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~   83 (269)
T d2hqsa1          21 LRVSDYD-GYNQFVVH-RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQVAS--------------FPR   83 (269)
T ss_dssp             EEEEETT-SCSCEEEE-EESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCEEEEEC--------------CSS
T ss_pred             EEEEcCC-CCCcEEEe-cCCCceeeeEECCCCC-EEEEEEeeccCcceeeeecccCceeEEee--------------eec
Confidence            4455654 44444554 4677888999999999 56644 3333  35555655544332222              356


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeC-CCeEEEE--eCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----c
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKG-DGVVDVI--NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----G  151 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  151 (250)
                      ......|+|      +++.++.... ++...++  ............  .........+++++..+......+..    .
T Consensus        84 ~~~~~~~sp------dg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~  155 (269)
T d2hqsa1          84 HNGAPAFSP------DGSKLAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK  155 (269)
T ss_dssp             CEEEEEECT------TSSEEEEEECTTSSCEEEEEETTTCCEEECCC--CSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             ccccceecC------CCCeeeEeeecCCccceeecccccccceeeee--ccccccccccccccccceecccccCCceEee
Confidence            678889998      8888876653 3332222  222222211111  11233334455555544422111110    0


Q ss_pred             --CeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCC-Ce--EEEEecCCCcceecccccceeeeeeccCCceeEEE
Q 025649          152 --GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-KL--VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC  226 (250)
Q Consensus       152 --~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d-~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (250)
                        ... .....+..+........|+   |+++.++..+.+ +.  +.+.|...+.           .....+........
T Consensus       156 ~~~~~-~~~~~~~~~~~~~~~~~~s---pdg~~~~~~~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~~p~  220 (269)
T d2hqsa1         156 VNING-GAPQRITWEGSQNQDADVS---SDGKFMVMVSSNGGQQHIAKQDLATGG-----------VQVLSSTFLDETPS  220 (269)
T ss_dssp             EETTS-SCCEECCCSSSEEEEEEEC---TTSSEEEEEEECSSCEEEEEEETTTCC-----------EEECCCSSSCEEEE
T ss_pred             eeccc-ccceeeecccccccccccc---cccceeEEEeecCCceeeeEeeccccc-----------ceEeecCccccceE
Confidence              000 0111223344566777889   889888776554 34  4444544431           12233445566778


Q ss_pred             ecCCCCCeEEEeeC---CceEEEEeC
Q 025649          227 TTPTESENLVVCDT---SKVVKVYSI  249 (250)
Q Consensus       227 ~~~~~~~~l~s~~~---d~~i~vw~~  249 (250)
                      |+| ||+.|+-.+.   ...|.++++
T Consensus       221 ~SP-DG~~i~f~s~~~~~~~l~~~~~  245 (269)
T d2hqsa1         221 LAP-NGTMVIYSSSQGMGSVLNLVST  245 (269)
T ss_dssp             ECT-TSSEEEEEEEETTEEEEEEEET
T ss_pred             ECC-CCCEEEEEEcCCCCcEEEEEEC
Confidence            998 8988764432   345777765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.92  E-value=1.9e-06  Score=62.66  Aligned_cols=205  Identities=9%  Similarity=-0.047  Sum_probs=120.9

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV   99 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~   99 (250)
                      ....+..++|.++|+ +.++-...+.|..|+..+++....+. .            .......+++.+      +|++++
T Consensus        38 ~~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~-~------------~~~~p~gla~~~------dG~l~v   97 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFV-S------------HKANPAAIKIHK------DGRLFV   97 (319)
T ss_dssp             SCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEE-C------------SSSSEEEEEECT------TSCEEE
T ss_pred             CCcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEEEe-C------------CCCCeeEEEECC------CCCEEE
Confidence            344567999999998 78888888999999987665443332 2            234568899998      898877


Q ss_pred             EEeC----CCeEEEEeCCCceeEeeccC-CCCCCccceeecccceeEEEeeeeeecc-Ce-------eeeeeccccCccc
Q 025649          100 VAKG----DGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNIRDAEMEILDQSG-GK-------RLHLDYSVGGHTA  166 (250)
Q Consensus       100 ~~~~----d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~h~~  166 (250)
                      +...    .+.+...+...+........ ........+++.++|++.++........ ..       ....+..+...-.
T Consensus        98 a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~  177 (319)
T d2dg1a1          98 CYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS  177 (319)
T ss_dssp             EECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES
T ss_pred             EecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccc
Confidence            7643    34456666665544333222 2234567789999998776421100000 00       0001111111223


Q ss_pred             cEEEEEeecCCCCCcEE-EEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649          167 AASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK  245 (250)
Q Consensus       167 ~v~~~~~~p~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  245 (250)
                      ..+.++|+   |+++.| ++-+..+.|..||+........... ...............|++.+ +|++.++....+.|.
T Consensus       178 ~pnGia~s---~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~-~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~  252 (319)
T d2dg1a1         178 VANGIALS---TDEKVLWVTETTANRLHRIALEDDGVTIQPFG-ATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVL  252 (319)
T ss_dssp             SEEEEEEC---TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE-EEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEE
T ss_pred             eeeeeeec---cccceEEEecccCCceEEEEEcCCCceecccc-ceeeeccCCccceeeeeEcC-CCCEEEEEcCCCEEE
Confidence            35679999   888755 5556788999999875321110000 01011112223466788886 888777777889999


Q ss_pred             EEeC
Q 025649          246 VYSI  249 (250)
Q Consensus       246 vw~~  249 (250)
                      +||-
T Consensus       253 ~~~p  256 (319)
T d2dg1a1         253 VFNK  256 (319)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            8873

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.81  E-value=6.5e-06  Score=59.64  Aligned_cols=194  Identities=12%  Similarity=0.080  Sum_probs=110.6

Q ss_pred             eeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC
Q 025649           24 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG  103 (250)
Q Consensus        24 v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~  103 (250)
                      -..++|.+++. .|+++...+.+...+....... .+....      ...  .....+.+++.+      +|++.++-..
T Consensus        73 P~Gl~~~~dg~-~l~vad~~~~i~~~~~~g~~~~-~~~~~~------~g~--~~~~pndl~~d~------~G~lyvtd~~  136 (314)
T d1pjxa_          73 PAGCQCDRDAN-QLFVADMRLGLLVVQTDGTFEE-IAKKDS------EGR--RMQGCNDCAFDY------EGNLWITAPA  136 (314)
T ss_dssp             EEEEEECSSSS-EEEEEETTTEEEEEETTSCEEE-CCSBCT------TSC--BCBCCCEEEECT------TSCEEEEECB
T ss_pred             ceeEEEeCCCC-EEEEEECCCeEEEEeCCCcEEE-EEeccc------ccc--ccCCCcEEEECC------CCCEEEecCc
Confidence            56799999998 6777776677888887644321 111010      000  011246677887      8887776432


Q ss_pred             ---------------CCeEEEEeCCCceeEeeccCCCCCCccceeecccce----eEEEee-------eeeeccC---ee
Q 025649          104 ---------------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI----RDAEME-------ILDQSGG---KR  154 (250)
Q Consensus       104 ---------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------~~~~~~~---~~  154 (250)
                                     +|.|..++.... .......  -.....++|+|++.    .+....       .++....   ..
T Consensus       137 ~~~~~~~~~~~~~~~~G~v~~~~~dg~-~~~~~~~--~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~  213 (314)
T d1pjxa_         137 GEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVDTA--FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN  213 (314)
T ss_dssp             CBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEEEE--ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred             cCcccccccceeccCCceEEEEeecCc-eeEeeCC--cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce
Confidence                           244555554432 2211111  12335677877653    232111       1111111   11


Q ss_pred             eeeeccccC-ccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCC
Q 025649          155 LHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE  233 (250)
Q Consensus       155 ~~~~~~~~~-h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  233 (250)
                      .+....+.+ +......+++.   ++|++.++....+.|.+||...+         ............+.+++|.| |++
T Consensus       214 ~~~~~~~~~~~~~~pdGiavD---~~GnlyVa~~~~g~I~~~dp~~g---------~~~~~i~~p~~~~t~~afg~-d~~  280 (314)
T d1pjxa_         214 KKVWGHIPGTHEGGADGMDFD---EDNNLLVANWGSSHIEVFGPDGG---------QPKMRIRCPFEKPSNLHFKP-QTK  280 (314)
T ss_dssp             EEEEEECCCCSSCEEEEEEEB---TTCCEEEEEETTTEEEEECTTCB---------SCSEEEECSSSCEEEEEECT-TSS
T ss_pred             eeEEEEccccccccceeeEEe---cCCcEEEEEcCCCEEEEEeCCCC---------EEEEEEECCCCCEEEEEEeC-CCC
Confidence            111222322 22345678998   89998888888899999998876         33334444456788999987 775


Q ss_pred             -eEEEeeCCceEEEEeC
Q 025649          234 -NLVVCDTSKVVKVYSI  249 (250)
Q Consensus       234 -~l~s~~~d~~i~vw~~  249 (250)
                       ++++.+.+|.|...++
T Consensus       281 ~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         281 TIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEEEEETTTTEEEEEEC
T ss_pred             EEEEEECCCCcEEEEEC
Confidence             5567777888887765

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.79  E-value=3.1e-06  Score=61.01  Aligned_cols=192  Identities=9%  Similarity=-0.024  Sum_probs=109.9

Q ss_pred             CCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEE
Q 025649           19 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC   98 (250)
Q Consensus        19 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l   98 (250)
                      .....+.+++|+++|. ++++...++.+..++..............          ........+++.+      +++++
T Consensus        65 ~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~n~i~~~~------~g~~~  127 (302)
T d2p4oa1          65 TVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTL----------PDAIFLNGITPLS------DTQYL  127 (302)
T ss_dssp             ECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEEC----------TTCSCEEEEEESS------SSEEE
T ss_pred             cCCCCcceEEEcCCCC-eEEEecCCceEEEEEecccccceeecccc----------CCccccceeEEcc------CCCEE
Confidence            4667899999999999 88888888888888876443211111010          0224567888887      89999


Q ss_pred             EEEeCCCeEEEEeCCCceeEeeccCC---------CCCCccceeecccceeEEE-----eeeeeeccCeeeeeeccccCc
Q 025649           99 VVAKGDGVVDVINIESELNISRSKST---------TKPLKGSQSTSKVNIRDAE-----MEILDQSGGKRLHLDYSVGGH  164 (250)
Q Consensus        99 ~~~~~d~~i~~~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~h  164 (250)
                      ++.+.++.+..+|...+.........         .......+.++.+..++..     +...+............+ ..
T Consensus       128 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~  206 (302)
T d2p4oa1         128 TADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VE  206 (302)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EE
T ss_pred             eeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccc-cC
Confidence            88889999999998876543322111         0112223333332222221     111111111111000111 11


Q ss_pred             cccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEec--CCCCCeEEEee
Q 025649          165 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT--PTESENLVVCD  239 (250)
Q Consensus       165 ~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~  239 (250)
                      ......+++.   ++|+++++...++.|..++.....        ..+......-..++.++|.  ..|++.|+.++
T Consensus       207 ~~~pdgia~d---~dG~l~va~~~~~~V~~i~p~G~~--------~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         207 QTNIDDFAFD---VEGNLYGATHIYNSVVRIAPDRST--------TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             SCCCSSEEEB---TTCCEEEECBTTCCEEEECTTCCE--------EEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             CCCCcceEEC---CCCCEEEEEcCCCcEEEECCCCCE--------EEEEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence            2334578999   899988888889999999876531        1222222333457889994  23777776544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.75  E-value=7.8e-06  Score=58.16  Aligned_cols=198  Identities=11%  Similarity=0.040  Sum_probs=117.3

Q ss_pred             CeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE-
Q 025649           23 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-  101 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-  101 (250)
                      .-..|+++++++ ++++-..++.|++||.+ |+.+..+....    .....   ...-..+++.+     ..+..+++. 
T Consensus        24 ~P~gvavd~dg~-i~VaD~~n~rI~v~d~~-G~~~~~~~~~~----~~~~~---~~~p~~~~~~~-----~~~~~~~~~~   89 (279)
T d1q7fa_          24 EPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGECG----KRDSQ---LLYPNRVAVVR-----NSGDIIVTER   89 (279)
T ss_dssp             CEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBS----SSTTC---BSSEEEEEEET-----TTTEEEEEEC
T ss_pred             CccEEEEcCCCC-EEEEECCCCEEEEEeCC-CCEEEEecccC----CCccc---ccccccccccc-----cccccceecc
Confidence            467999999998 88887788999999975 66655553110    00000   11123333333     134444443 


Q ss_pred             eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeee-ec-cCeeeeeeccc--cCccccEEEEEeecCC
Q 025649          102 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-QS-GGKRLHLDYSV--GGHTAAASCVAFSMFG  177 (250)
Q Consensus       102 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~--~~h~~~v~~~~~~p~~  177 (250)
                      +.++.|..++.. +.....+..........+++.++|..++...... .. .....+.+..+  ..+......+++.   
T Consensus        90 ~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d---  165 (279)
T d1q7fa_          90 SPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVN---  165 (279)
T ss_dssp             GGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEEC---
T ss_pred             CCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeec---
Confidence            455677777765 4444444444345567888889888776421100 00 00111122222  3455667888888   


Q ss_pred             CCCcEEEEeeCCCeEEEEecCCCcceecccccceeeee--eccCCceeEEEecCCCCCeEEEee-CCceEEEEeC
Q 025649          178 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN--INLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI  249 (250)
Q Consensus       178 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~vw~~  249 (250)
                      ++++++++....+.|++||...          +.+..+  .+....+..+++.+ +|+++++-. .++.|.+|+.
T Consensus       166 ~~g~i~v~d~~~~~V~~~d~~G----------~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         166 DKQEIFISDNRAHCVKVFNYEG----------QYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             SSSEEEEEEGGGTEEEEEETTC----------CEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT
T ss_pred             cceeEEeeeccccceeeeecCC----------ceeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECC
Confidence            8899888888899999999765          233232  23344578888887 777666643 3456888763

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3e-06  Score=64.91  Aligned_cols=173  Identities=9%  Similarity=-0.013  Sum_probs=98.8

Q ss_pred             cEEEEcccceeeeeecc--CCCCCeeeEEEcCCCCeEEEEe---------cCCCeEEEEEccCCCCccceecCCCCCCCC
Q 025649            2 WQIIDIRQHCLYKSLRA--GHSSICSSVQFIPWKPWEVISG---------GLDSKLVMWDFSKGRPNKIVNFGLPENNGN   70 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~--~h~~~v~~l~~~~~~~~~l~s~---------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~   70 (250)
                      |.+||+.+++....+..  -..-.+....||||++ +++..         +..+.+.++|+.++.........       
T Consensus        39 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~-~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~-------  110 (465)
T d1xfda1          39 VRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-------  110 (465)
T ss_dssp             EEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-------
T ss_pred             EEEEECCCCCEEEEEcCccccccccceeEECCCCC-eEEEEEcccceeEeeccccEEEEEccCCceeeccCcc-------
Confidence            67889888775433430  1234677889999999 45443         34578899999887653332211       


Q ss_pred             CCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCC-----------------Ccccee
Q 025649           71 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP-----------------LKGSQS  133 (250)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------------~~~~~~  133 (250)
                          .....+....|+|      +|+.||-.. ++.|.+.+..++............                 .-..+.
T Consensus       111 ----~~~~~l~~~~wSP------DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         111 ----VSNAKLQYAGWGP------KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             ----CCSCCCSBCCBCS------STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             ----CCccccceeeecc------CCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence                0123456688998      999998875 577888888776544333221111                 123566


Q ss_pred             ecccceeEEEeeeeeeccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649          134 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  201 (250)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~  201 (250)
                      |||||++|+.. ..|...................+..+.+.   .-|.-    .....+.++|+.++.
T Consensus       180 WSPDgk~iaf~-~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp---~~G~~----np~~~l~v~d~~~~~  239 (465)
T d1xfda1         180 WSPDGTRLAYA-AINDSRVPIMELPTYTGSIYPTVKPYHYP---KAGSE----NPSISLHVIGLNGPT  239 (465)
T ss_dssp             ECTTSSEEEEE-EEECTTSCEEEECCCSSSSSCCCEEEECC---BTTSC----CCEEEEEEEESSSSC
T ss_pred             ECCCCCeEEEE-Eecccccceeecccccccccceeeeeecc---ccCCC----CCceeEEEEecCCCc
Confidence            99999999943 33433332222111111222334555553   22211    112357788887653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=2e-06  Score=60.73  Aligned_cols=190  Identities=7%  Similarity=-0.026  Sum_probs=100.3

Q ss_pred             EEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEe
Q 025649            5 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA   84 (250)
Q Consensus         5 wd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   84 (250)
                      .+...+.. ..+. .+........|+|+|+.++.....++...++..............            .........
T Consensus        68 ~~~~~~~~-~~~~-~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~  133 (269)
T d2hqsa1          68 QTLANGAV-RQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD------------GRSNNTEPT  133 (269)
T ss_dssp             EETTTCCE-EEEE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC------------CSSCEEEEE
T ss_pred             eecccCce-eEEe-eeecccccceecCCCCeeeEeeecCCccceeecccccccceeeee------------ccccccccc
Confidence            34444333 3344 577788899999999954444444444444443322211111101            122233344


Q ss_pred             cCCCcccCCCCC-EEEEEeCCC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeec----cCeeeee
Q 025649           85 IPDADMLDKTNK-ICVVAKGDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLHL  157 (250)
Q Consensus        85 ~~~~~~~~~~~~-~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  157 (250)
                      +++      +++ .+++...++  .|.+.++..+........  ........++|+++.++........    .......
T Consensus       134 ~~~------~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~  205 (269)
T d2hqsa1         134 WFP------DSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  205 (269)
T ss_dssp             ECT------TSSEEEEEECTTSSCEEEEEETTSSCCEECCCS--SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred             ccc------ccccceecccccCCceEeeeecccccceeeecc--cccccccccccccceeEEEeecCCceeeeEeecccc
Confidence            554      444 444444555  455556665543332222  2556677899999998853221111    0000000


Q ss_pred             eccccCccccEEEEEeecCCCCCcEEEEeeC---CCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecC
Q 025649          158 DYSVGGHTAAASCVAFSMFGERGKYLISGGN---DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  229 (250)
Q Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (250)
                      ......+........|+   |+|+.|+..+.   ...|.++++..+.          ...+......+...+|+|
T Consensus       206 ~~~~~~~~~~~~~p~~S---PDG~~i~f~s~~~~~~~l~~~~~dg~~----------~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         206 GVQVLSSTFLDETPSLA---PNGTMVIYSSSQGMGSVLNLVSTDGRF----------KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CEEECCCSSSCEEEEEC---TTSSEEEEEEEETTEEEEEEEETTSCC----------EEECCCSSSEEEEEEECC
T ss_pred             cceEeecCccccceEEC---CCCCEEEEEEcCCCCcEEEEEECCCCC----------EEEEeCCCCcEEeEEeCC
Confidence            01122234455677899   89998875543   3478899998752          234445566777888987

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.71  E-value=1.3e-05  Score=57.04  Aligned_cols=208  Identities=9%  Similarity=0.043  Sum_probs=123.2

Q ss_pred             cEEEEcccceeeeeecc-----CCCCCeeeEEEcCCCCeEEE-EecCCCeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649            2 WQIIDIRQHCLYKSLRA-----GHSSICSSVQFIPWKPWEVI-SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~-----~h~~~v~~l~~~~~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      |++||.+ |+.+..+..     +....-..+++.++....++ ..+.++.|..++. .++....+...            
T Consensus        46 I~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~------------  111 (279)
T d1q7fa_          46 IQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGAT------------  111 (279)
T ss_dssp             EEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTT------------
T ss_pred             EEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-cccceeecCCC------------
Confidence            4566643 555544430     11112345565555432343 3445567777775 45555555322            


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeec-cCCCCCCccceeecccceeEEEee------eee
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS-KSTTKPLKGSQSTSKVNIRDAEME------ILD  148 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~  148 (250)
                      .......+++.+      +++++++....+.+.+++.... .+..+ ..........+++.+++..+++..      .++
T Consensus       112 ~~~~p~~~avd~------~G~i~v~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d  184 (279)
T d1q7fa_         112 ILQHPRGVTVDN------KGRIIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFN  184 (279)
T ss_dssp             TCSCEEEEEECT------TSCEEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEE
T ss_pred             cccccceecccc------CCcEEEEeeccceeeEeccCCc-eeecccccccccccceeeeccceeEEeeeccccceeeee
Confidence            234567788887      8888888888888999987643 33332 222335567788888888776311      111


Q ss_pred             eccCeeeeeeccc--cCccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecCCCcceecccccceeeeeec--cCCcee
Q 025649          149 QSGGKRLHLDYSV--GGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNIN--LNKKVN  223 (250)
Q Consensus       149 ~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~  223 (250)
                      .    ..+.+.++  .+.......+++.   ++|+++++-+. ++.|.+|+.. +         +++..+..  ......
T Consensus       185 ~----~G~~~~~~g~~g~~~~P~giavD---~~G~i~Vad~~~~~~v~~f~~~-G---------~~~~~~~~~~~~~~p~  247 (279)
T d1q7fa_         185 Y----EGQYLRQIGGEGITNYPIGVGIN---SNGEILIADNHNNFNLTIFTQD-G---------QLISALESKVKHAQCF  247 (279)
T ss_dssp             T----TCCEEEEESCTTTSCSEEEEEEC---TTCCEEEEECSSSCEEEEECTT-S---------CEEEEEEESSCCSCEE
T ss_pred             c----CCceeeeecccccccCCcccccc---cCCeEEEEECCCCcEEEEECCC-C---------CEEEEEeCCCCCCCEe
Confidence            1    11222233  2345567889999   89998877544 5579999854 3         33333322  223578


Q ss_pred             EEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          224 WLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       224 ~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      .+++.| +|. |++++.++.|++|.+
T Consensus       248 ~vav~~-dG~-l~V~~~n~~v~~fr~  271 (279)
T d1q7fa_         248 DVALMD-DGS-VVLASKDYRLYIYRY  271 (279)
T ss_dssp             EEEEET-TTE-EEEEETTTEEEEEEC
T ss_pred             EEEEeC-CCc-EEEEeCCCeEEEEEe
Confidence            888987 786 455667999999985

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.54  E-value=4.8e-05  Score=56.21  Aligned_cols=155  Identities=9%  Similarity=-0.018  Sum_probs=90.4

Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCC-ceeEeeccCCCCCCccceeecccceeEEEee---------ee
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRSKSTTKPLKGSQSTSKVNIRDAEME---------IL  147 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  147 (250)
                      ..+..|+++|      +++.|.++.. +.+..|.+.. +................+.++++++.+....         ..
T Consensus        40 ~~~s~la~s~------d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~  112 (365)
T d1jofa_          40 EPISWMTFDH------ERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYAN  112 (365)
T ss_dssp             CCCSEEEECT------TSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred             CCCCEEEEcC------CCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEe
Confidence            3456799998      9999988765 5677776654 2222222222335677889999998543111         00


Q ss_pred             eecc-Ceee------------eeec-cccCccccEEEEEeecCCCCCcEEEEeeC-CCeEEEEecCCCcceeccccccee
Q 025649          148 DQSG-GKRL------------HLDY-SVGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLL  212 (250)
Q Consensus       148 ~~~~-~~~~------------~~~~-~~~~h~~~v~~~~~~p~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~  212 (250)
                      .... ....            .... .-......+.++.|+   |+|+++++++. ...|.+|+.......      ...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~s---PdG~~l~v~d~g~d~v~~~~~~~~g~~------~~~  183 (365)
T d1jofa_         113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD---PTETYLYSADLTANKLWTHRKLASGEV------ELV  183 (365)
T ss_dssp             EESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTSCE------EEE
T ss_pred             EccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEEC---CCCCEEEEeeCCCCEEEEEEccCCCce------eec
Confidence            0000 0000            0000 001112347899999   89998887764 458888876653221      111


Q ss_pred             ee--eeccCCceeEEEecCCCCCeEEE-eeCCceEEEEeC
Q 025649          213 IK--NINLNKKVNWLCTTPTESENLVV-CDTSKVVKVYSI  249 (250)
Q Consensus       213 ~~--~~~~~~~v~~~~~~~~~~~~l~s-~~~d~~i~vw~~  249 (250)
                      ..  ..........++|+| +++++++ ...++.|.+|++
T Consensus       184 ~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         184 GSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             EEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             cceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEe
Confidence            11  123345788899998 7777654 557889999986

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.43  E-value=0.0001  Score=53.26  Aligned_cols=199  Identities=7%  Similarity=-0.028  Sum_probs=107.0

Q ss_pred             EEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecC----CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            3 QIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL----DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         3 ~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      .-||.++++....+. ........|+++++|. ++++...    .+.+...+...+.........           ....
T Consensus        64 ~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----------~~~~  130 (319)
T d2dg1a1          64 FKINPETKEIKRPFV-SHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-----------STAY  130 (319)
T ss_dssp             EEECTTTCCEEEEEE-CSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSS-----------SSCC
T ss_pred             EEEECCCCeEEEEEe-CCCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcCCCceeeeeccCC-----------Cccc
Confidence            334444444444443 4455678999999998 6665433    233444455444333222211           0123


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeC------CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-------
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKG------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-------  145 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  145 (250)
                      ....+++.+      +|++.++...      .+.+..++...+........  -.....++|+|+++.+....       
T Consensus       131 ~~nd~~~d~------~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~--~~~pnGia~s~dg~~lyvad~~~~~I~  202 (319)
T d2dg1a1         131 CIDDMVFDS------KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKVLWVTETTANRLH  202 (319)
T ss_dssp             CEEEEEECT------TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             CCcceeEEe------ccceeecccccccccCcceeEEEecccceeEEEeec--cceeeeeeeccccceEEEecccCCceE
Confidence            456788887      8887666432      23466666554332221111  13456799999998665322       


Q ss_pred             eeeecc-Cee-----eeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeee---
Q 025649          146 ILDQSG-GKR-----LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI---  216 (250)
Q Consensus       146 ~~~~~~-~~~-----~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---  216 (250)
                      .++... ...     ........+ ......+++.   ++|++.++....+.|.+||.. ++         .+....   
T Consensus       203 ~~d~~~~g~~~~~~~~~~~~~~~~-~~~PdGl~vD---~~G~l~Va~~~~g~V~~~~p~-G~---------~l~~i~~P~  268 (319)
T d2dg1a1         203 RIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCID---SDDNLYVAMYGQGRVLVFNKR-GY---------PIGQILIPG  268 (319)
T ss_dssp             EEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEB---TTCCEEEEEETTTEEEEECTT-SC---------EEEEEECTT
T ss_pred             EEEEcCCCceeccccceeeeccCC-ccceeeeeEc---CCCCEEEEEcCCCEEEEECCC-Cc---------EEEEEeCCC
Confidence            122110 100     011111222 2235678998   899998888889999999964 53         322222   


Q ss_pred             ---ccCCceeEEEecCCCCCeEEE
Q 025649          217 ---NLNKKVNWLCTTPTESENLVV  237 (250)
Q Consensus       217 ---~~~~~v~~~~~~~~~~~~l~s  237 (250)
                         ++...+.++++.+ +...+++
T Consensus       269 ~~~~~~~~~~~~~~~~-~~~~~~~  291 (319)
T d2dg1a1         269 RDEGHMLRSTHPQFIP-GTNQLII  291 (319)
T ss_dssp             GGGTCSCBCCEEEECT-TSCEEEE
T ss_pred             cCCCcCceeeeEEEeC-CCCEEEE
Confidence               3344577888887 4444444

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.42  E-value=0.0001  Score=52.67  Aligned_cols=202  Identities=9%  Similarity=0.038  Sum_probs=117.8

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCcee
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH   81 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (250)
                      |.-||.++++. ..+.  ....+.++++.+++. ++++ +.+ -+.++|..+++.........    .     .....++
T Consensus        42 I~r~d~~~g~~-~~~~--~~~~~~~i~~~~dg~-l~va-~~~-gl~~~d~~tg~~~~l~~~~~----~-----~~~~~~n  106 (295)
T d2ghsa1          42 LHELHLASGRK-TVHA--LPFMGSALAKISDSK-QLIA-SDD-GLFLRDTATGVLTLHAELES----D-----LPGNRSN  106 (295)
T ss_dssp             EEEEETTTTEE-EEEE--CSSCEEEEEEEETTE-EEEE-ETT-EEEEEETTTCCEEEEECSST----T-----CTTEEEE
T ss_pred             EEEEECCCCeE-EEEE--CCCCcEEEEEecCCC-EEEE-EeC-ccEEeecccceeeEEeeeec----C-----CCcccce
Confidence            34455555543 2333  345688999999887 5554 444 58889998886533222110    0     0123467


Q ss_pred             EEecCCCcccCCCCCEEEEEeC----CCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-------eee-
Q 025649           82 AIAIPDADMLDKTNKICVVAKG----DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-------LDQ-  149 (250)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-  149 (250)
                      .+.+.|      +|++.++...    .+.-.+|.+..++........  .....+.++++++.+..+..       .+. 
T Consensus       107 d~~vd~------~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~--~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d  178 (295)
T d2ghsa1         107 DGRMHP------SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI--SIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  178 (295)
T ss_dssp             EEEECT------TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE--SSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             eeEECC------CCCEEEEeccccccccceeEeeecCCcEEEEeecc--CCcceeeecCCCceEEEeecccceeeEeeec
Confidence            788887      8887766542    234456666666544333222  34567889999886653211       111 


Q ss_pred             -ccC---eeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEE
Q 025649          150 -SGG---KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL  225 (250)
Q Consensus       150 -~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (250)
                       ...   ........+.+..+....+++.   .+|++.++.-..+.|..||...          +++....-....++++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~g~pdG~~vD---~~GnlWva~~~~g~V~~~dp~G----------~~~~~i~lP~~~~T~~  245 (295)
T d2ghsa1         179 ARTGLPTGKAEVFIDSTGIKGGMDGSVCD---AEGHIWNARWGEGAVDRYDTDG----------NHIARYEVPGKQTTCP  245 (295)
T ss_dssp             TTTCCBSSCCEEEEECTTSSSEEEEEEEC---TTSCEEEEEETTTEEEEECTTC----------CEEEEEECSCSBEEEE
T ss_pred             ccccccccceEEEeccCcccccccceEEc---CCCCEEeeeeCCCceEEecCCC----------cEeeEecCCCCceEEE
Confidence             100   1111122333445567888888   8999888877788999999654          4444444444578999


Q ss_pred             EecCCCCCeE-EEee
Q 025649          226 CTTPTESENL-VVCD  239 (250)
Q Consensus       226 ~~~~~~~~~l-~s~~  239 (250)
                      +|--+|.+.| +|..
T Consensus       246 ~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         246 AFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEESTTSCEEEEEEB
T ss_pred             EEeCCCCCEEEEEEC
Confidence            9975465544 4433

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.39  E-value=0.00013  Score=52.54  Aligned_cols=204  Identities=9%  Similarity=-0.027  Sum_probs=115.3

Q ss_pred             CeeeEEEcCCCCeEEEEecC-------CCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCC
Q 025649           23 ICSSVQFIPWKPWEVISGGL-------DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN   95 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   95 (250)
                      ....++|.|+|. ++++...       +|+|..||..+++........      ...   ....-..+++.+      ++
T Consensus        19 g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~------~~~---~~g~P~Gl~~~~------dg   82 (314)
T d1pjxa_          19 GAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE------VNG---YGGIPAGCQCDR------DA   82 (314)
T ss_dssp             TCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCE------ETT---EECCEEEEEECS------SS
T ss_pred             CCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECCc------ccc---CCCcceeEEEeC------CC
Confidence            456789999998 5554322       467888998776543222100      000   011246788888      88


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeEeeccCCCC---CCccceeecccceeEEEeeeeeeccC-------eeeeeeccc----
Q 025649           96 KICVVAKGDGVVDVINIESELNISRSKSTTK---PLKGSQSTSKVNIRDAEMEILDQSGG-------KRLHLDYSV----  161 (250)
Q Consensus        96 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~----  161 (250)
                      +.++++...+.|..+|...+...........   .....+++.++|.+.++.........       ...-.+..+    
T Consensus        83 ~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg  162 (314)
T d1pjxa_          83 NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG  162 (314)
T ss_dssp             SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS
T ss_pred             CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC
Confidence            8888887777899999877554432222211   23567899999988875322111100       000001111    


Q ss_pred             -----cCccccEEEEEeecCCCCCc-----EEEEeeCCCeEEEEecCCCcceecccccceeeeeec-cCCceeEEEecCC
Q 025649          162 -----GGHTAAASCVAFSMFGERGK-----YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-LNKKVNWLCTTPT  230 (250)
Q Consensus       162 -----~~h~~~v~~~~~~p~~~~~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~  230 (250)
                           .......+.++|+   +++.     ++++-+..+.|..||+........   .+....... .......+++.+ 
T Consensus       163 ~~~~~~~~~~~pNGi~~~---~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~---~~~~~~~~~~~~~~pdGiavD~-  235 (314)
T d1pjxa_         163 QMIQVDTAFQFPNGIAVR---HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN---KKVWGHIPGTHEGGADGMDFDE-  235 (314)
T ss_dssp             CEEEEEEEESSEEEEEEE---ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE---EEEEEECCCCSSCEEEEEEEBT-
T ss_pred             ceeEeeCCcceeeeeEEC---CCCCcceeEEEEEeecccceEEeeccCccccce---eeEEEEccccccccceeeEEec-
Confidence                 1111234578888   5543     555567788999998765322210   011111111 223456788886 


Q ss_pred             CCCeEEEeeCCceEEEEeC
Q 025649          231 ESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       231 ~~~~l~s~~~d~~i~vw~~  249 (250)
                      +|++.++....+.|.+||.
T Consensus       236 ~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         236 DNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             TCCEEEEEETTTEEEEECT
T ss_pred             CCcEEEEEcCCCEEEEEeC
Confidence            8887777777888999874

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.22  E-value=0.00023  Score=52.68  Aligned_cols=201  Identities=10%  Similarity=0.039  Sum_probs=122.6

Q ss_pred             eEEEcC---CCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe
Q 025649           26 SVQFIP---WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  102 (250)
Q Consensus        26 ~l~~~~---~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  102 (250)
                      .+++..   ||+++++.-..+++|.+-|+++.++.+.+..+            ....++.+...+    .++..+++..+
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iP------------n~~~~HG~r~~~----~p~T~YV~~~~  152 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP------------NAKGIHGLRPQK----WPRSNYVFCNG  152 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS------------SCCSEEEEEECC----SSBCSEEEEEE
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecC------------CCCCCceeeccc----CCCeEEEEccC
Confidence            455543   78877777788999999999999887766544            345677766654    23566777665


Q ss_pred             CC------------------CeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeecc--------C----
Q 025649          103 GD------------------GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG--------G----  152 (250)
Q Consensus       103 ~d------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~----  152 (250)
                      .+                  +.+.++|..+.+...++...  .....+.++++|++++.........        .    
T Consensus       153 e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~--g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~  230 (459)
T d1fwxa2         153 EDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH  230 (459)
T ss_dssp             CSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred             ccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeC--CChhccccCCCCCEEEEEeccccCCcchhhcccccceE
Confidence            53                  34678899887776665544  4677899999999988432111000        0    


Q ss_pred             ------------------eee---e-----------eeccccCccccEEEEEeecCCCCCcEEEEee-CCCeEEEEecCC
Q 025649          153 ------------------KRL---H-----------LDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSR  199 (250)
Q Consensus       153 ------------------~~~---~-----------~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~-~d~~i~iwd~~~  199 (250)
                                        ...   .           .++.+.. ......+.++   |+|++++.++ .+.++.++|++.
T Consensus       231 i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vS---PDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         231 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMA---PDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             EEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEEC---TTSSEEEEECTTSSBEEEEEGGG
T ss_pred             EEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEEC---CCCCEEEEeCCcCCcEEEEEehh
Confidence                              000   0           0000111 1223567778   8999887765 589999999986


Q ss_pred             Ccceec--ccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEeC
Q 025649          200 FQGVQT--SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  249 (250)
Q Consensus       200 ~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~~  249 (250)
                      ......  ......+.......-....-+|.. +|....|---|..|--|++
T Consensus       307 i~~~~~~~~~~~~~~~~e~elglgPLht~fd~-~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         307 FDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             HHHHHHSCC-GGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEH
T ss_pred             hhhhhcccCCccccEEeecccCcCccccccCC-CceEEEEeeccceEEEEec
Confidence            433210  001122222233344566667765 5654455567899999986

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.05  E-value=0.00068  Score=47.37  Aligned_cols=100  Identities=8%  Similarity=0.101  Sum_probs=57.2

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEe-c---CC--CeEEEEEccCCCCccceecCCCCCCCCCCccc
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG-G---LD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY   75 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~-s---~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   75 (250)
                      |.+.|+.+++. ..|. .+.+.+...+|||||+ .|+-. .   .+  ..|.+.+..+++........       .....
T Consensus        23 l~~~d~~~g~~-~~Lt-~~~~~~~~p~~SPDG~-~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~-------~~~~~   92 (281)
T d1k32a2          23 LWEHDLKSGST-RKIV-SNLGVINNARFFPDGR-KIAIRVMRGSSLNTADLYFYNGENGEIKRITYFS-------GKSTG   92 (281)
T ss_dssp             EEEEETTTCCE-EEEE-CSSSEEEEEEECTTSS-EEEEEEEESTTCCEEEEEEEETTTTEEEECCCCC-------EEEET
T ss_pred             EEEEECCCCCE-EEEe-cCCCcccCEEECCCCC-EEEEEEeeCCCCCceEEEEEEecCCceEEeeecC-------CCccC
Confidence            34558877776 4566 6778889999999999 56533 2   22  23666777666543322111       00000


Q ss_pred             CCCceeEEecCCCcccCCCCCEEEEEeCC------CeEEEEeCCCcee
Q 025649           76 NPAFVHAIAIPDADMLDKTNKICVVAKGD------GVVDVINIESELN  117 (250)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~  117 (250)
                      .........|+|      +++.|+.....      ..+...+...+..
T Consensus        93 ~~~~~~~~~~sp------dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  134 (281)
T d1k32a2          93 RRMFTDVAGFDP------DGNLIISTDAMQPFSSMTCLYRVENDGINF  134 (281)
T ss_dssp             TEECSEEEEECT------TCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred             ccccccccccCC------CCCEEEEEEccCCCccceeeeeecCCCcee
Confidence            112345678888      99988876332      2345555554443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.4e-05  Score=59.78  Aligned_cols=99  Identities=6%  Similarity=-0.013  Sum_probs=59.0

Q ss_pred             eEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEe---
Q 025649           26 SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK---  102 (250)
Q Consensus        26 ~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~---  102 (250)
                      ...|.+++. ++. -..+|.|.+||+.+++....+...          .+....+....++|      |+++++...   
T Consensus        21 ~~~W~~~~~-~~~-~~~~g~i~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~Sp------D~~~vl~~~~~~   82 (465)
T d1xfda1          21 EAKWISDTE-FIY-REQKGTVRLWNVETNTSTVLIEGK----------KIESLRAIRYEISP------DREYALFSYNVE   82 (465)
T ss_dssp             CCCBSSSSC-BCC-CCSSSCEEEBCGGGCCCEEEECTT----------TTTTTTCSEEEECT------TSSEEEEEESCC
T ss_pred             CCEEeCCCc-EEE-EeCCCcEEEEECCCCCEEEEEcCc----------cccccccceeEECC------CCCeEEEEEccc
Confidence            346888887 444 456789999999988764333311          01123456677898      999887763   


Q ss_pred             ------CCCeEEEEeCCCceeEeeccC-CCCCCccceeecccceeEE
Q 025649          103 ------GDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus       103 ------~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  142 (250)
                            ..+.+.++|+.++........ .....+....|||||+.++
T Consensus        83 ~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~ia  129 (465)
T d1xfda1          83 PIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLI  129 (465)
T ss_dssp             CCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEE
T ss_pred             ceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEE
Confidence                  346788888887664332111 1112333455555555554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.02  E-value=0.00088  Score=47.66  Aligned_cols=195  Identities=11%  Similarity=0.039  Sum_probs=113.3

Q ss_pred             eeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCC
Q 025649           25 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD  104 (250)
Q Consensus        25 ~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d  104 (250)
                      .+..|++....+..+=-..+.|.-||..+++. ..+..              +..+.++++.+      ++.++++ +.+
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~--------------~~~~~~i~~~~------dg~l~va-~~~   78 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRK-TVHAL--------------PFMGSALAKIS------DSKQLIA-SDD   78 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEEC--------------SSCEEEEEEEE------TTEEEEE-ETT
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeE-EEEEC--------------CCCcEEEEEec------CCCEEEE-EeC
Confidence            46678875553556655678999999987753 34442              35677888876      7766665 454


Q ss_pred             CeEEEEeCCCceeEeeccCC---CCCCccceeecccceeEEEeeeeeeccC-------eeeeeeccccCccccEEEEEee
Q 025649          105 GVVDVINIESELNISRSKST---TKPLKGSQSTSKVNIRDAEMEILDQSGG-------KRLHLDYSVGGHTAAASCVAFS  174 (250)
Q Consensus       105 ~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~  174 (250)
                       .+.++|..+++........   .......+.+.|+|++.++.........       ...+.. .+...-...+.++|+
T Consensus        79 -gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~-~~~~~~~~~Ng~~~s  156 (295)
T d2ghsa1          79 -GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT-KLFADISIPNSICFS  156 (295)
T ss_dssp             -EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE-EEEEEESSEEEEEEC
T ss_pred             -ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEE-EEeeccCCcceeeec
Confidence             5899999988755433222   1235677889999988774321111100       001111 111112235678898


Q ss_pred             cCCCCCcE-EEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          175 MFGERGKY-LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       175 p~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                         ++++. +++-+..+.|..|++........ ..........+.......+++.. +|.+.++.-..+.|..||
T Consensus       157 ---~d~~~l~~~dt~~~~I~~~~~d~~~~~~~-~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~d  226 (295)
T d2ghsa1         157 ---PDGTTGYFVDTKVNRLMRVPLDARTGLPT-GKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYD  226 (295)
T ss_dssp             ---TTSCEEEEEETTTCEEEEEEBCTTTCCBS-SCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEEC
T ss_pred             ---CCCceEEEeecccceeeEeeecccccccc-cceEEEeccCcccccccceEEcC-CCCEEeeeeCCCceEEec
Confidence               77764 45666788999998754321110 00011122223345577788775 777666655677788776

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.75  E-value=0.0038  Score=46.15  Aligned_cols=207  Identities=11%  Similarity=0.067  Sum_probs=108.0

Q ss_pred             EEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcc--------------------------cCCCcee--EEecCC
Q 025649           36 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQC--------------------------YNPAFVH--AIAIPD   87 (250)
Q Consensus        36 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~v~--~~~~~~   87 (250)
                      .|.||+..|.|+++-+.+++.+..+..=.+......+..                          +.....+  .+.+..
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td   94 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   94 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC
Confidence            467899999999999999988777653222111111100                          0001111  122221


Q ss_pred             CcccCCCCCEEEEEe-CCCeEEEEeCCCceeEeeccCCCCCCccceeecc--cceeEEEeeeeee---------------
Q 025649           88 ADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSK--VNIRDAEMEILDQ---------------  149 (250)
Q Consensus        88 ~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------------  149 (250)
                      ..   .||++|++.. .++.|.+.|+++.+.......+....+..+...+  +..+++..+....               
T Consensus        95 Gt---yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y  171 (459)
T d1fwxa2          95 GK---YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  171 (459)
T ss_dssp             TE---EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-E
T ss_pred             Cc---cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhc
Confidence            11   2678887775 6889999999998876665555555666555544  4444442111110               


Q ss_pred             ------ccCeeeeeeccccCccccEEEEEeecCCCCCcEEEEeeCCC---------------eEEEEecCCCcce-----
Q 025649          150 ------SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK---------------LVKVWDCSRFQGV-----  203 (250)
Q Consensus       150 ------~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~---------------~i~iwd~~~~~~~-----  203 (250)
                            .+....+...+... .+....+.++   ++|+++++.+.+.               .+.+++.......     
T Consensus       172 ~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s---~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         172 VNVFTAVDADKWEVAWQVLV-SGNLDNCDAD---YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             EEEEEEEETTTTEEEEEEEE-SSCCCCEEEC---SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             ceEEEEEecCCceEEEEeee-CCChhccccC---CCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                  01111111111111 1233456777   8899888876431               2333433211000     


Q ss_pred             -------ec---c-cccceeeeeeccCCceeEEEecCCCCCeEEE-eeCCceEEEEeCC
Q 025649          204 -------QT---S-INNDLLIKNINLNKKVNWLCTTPTESENLVV-CDTSKVVKVYSIS  250 (250)
Q Consensus       204 -------~~---~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d~~i~vw~~~  250 (250)
                             ..   . .....+..+..-......+..+| ||+++++ +..+.++.|+|++
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSP-DGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECT-TSSEEEEECTTSSBEEEEEGG
T ss_pred             cEEeCCceeecccccCCcceeEEEecCCCCCceEECC-CCCEEEEeCCcCCcEEEEEeh
Confidence                   00   0 00112222334445567788887 8888766 5578999999873

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.32  E-value=0.011  Score=43.25  Aligned_cols=97  Identities=13%  Similarity=0.043  Sum_probs=61.7

Q ss_pred             cEEEEcccceeee--eeccCCCCCeeeEEEcCCCCeEEEEecCC-CeEEEEEccCCCCccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLYK--SLRAGHSSICSSVQFIPWKPWEVISGGLD-SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~~--~l~~~h~~~v~~l~~~~~~~~~l~s~s~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      +.+||+.+++...  .+...|.......++.+++. +++.|+.+ ..+.+||..+......-...            .+.
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~------------~~r  120 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSDSWIPGPDMQ------------VAR  120 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGTEEEECCCCS------------SCC
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEecCccCccccccccc------------ccc
Confidence            4689998776432  22213444455678899998 78887655 68999999876532211111            122


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCC------CeEEEEeCCCcee
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGD------GVVDVINIESELN  117 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~  117 (250)
                      .-++.+..+      ++++++.|+.+      ..+.+||..+.+.
T Consensus       121 ~~~~~~~~~------dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         121 GYQSSATMS------DGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             SSCEEEECT------TSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             cccceeeec------CCceeeeccccccccccceeeeecCCCCce
Confidence            334556665      88999888753      3688999887654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.15  E-value=0.012  Score=40.68  Aligned_cols=94  Identities=10%  Similarity=-0.062  Sum_probs=61.8

Q ss_pred             EEcCC--CCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeC-C
Q 025649           28 QFIPW--KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-D  104 (250)
Q Consensus        28 ~~~~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-d  104 (250)
                      ..+|+  |+ .++-.+ +|.|.+.|+.+++... +..             ++.......|+|      ||+.|+.... +
T Consensus         5 ~~sPdi~G~-~v~f~~-~~dl~~~d~~~g~~~~-Lt~-------------~~~~~~~p~~SP------DG~~iaf~~~~~   62 (281)
T d1k32a2           5 LLNPDIHGD-RIIFVC-CDDLWEHDLKSGSTRK-IVS-------------NLGVINNARFFP------DGRKIAIRVMRG   62 (281)
T ss_dssp             CEEEEEETT-EEEEEE-TTEEEEEETTTCCEEE-EEC-------------SSSEEEEEEECT------TSSEEEEEEEES
T ss_pred             ccCCCCCCC-EEEEEe-CCcEEEEECCCCCEEE-Eec-------------CCCcccCEEECC------CCCEEEEEEeeC
Confidence            45788  98 455443 4568888998776543 332             356778899999      9998886542 2


Q ss_pred             -----CeEEEEeCCCceeEeeccCC-----CCCCccceeecccceeEEE
Q 025649          105 -----GVVDVINIESELNISRSKST-----TKPLKGSQSTSKVNIRDAE  143 (250)
Q Consensus       105 -----~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  143 (250)
                           ..|.+++..++.........     .........|+|+|+.++.
T Consensus        63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEE
Confidence                 24778888877655432221     1123456789999998874

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.77  E-value=0.015  Score=45.18  Aligned_cols=79  Identities=8%  Similarity=0.107  Sum_probs=53.9

Q ss_pred             CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC
Q 025649           44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  123 (250)
Q Consensus        44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  123 (250)
                      |.|.-||+.+++.+.....+.              ...+-.+.-      .+.++++|+.||.++.+|.++|+.+.+...
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~--------------~~~gg~l~T------agglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT--------------HWNGGTLST------AGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS--------------SCCCCEEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEeCCCCeEeeeccCCC--------------CCCCceeEE------CCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            467777777777776665441              111111111      467888899999999999999999988777


Q ss_pred             CCCCCccceeecccceeEE
Q 025649          124 TTKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~  142 (250)
                      .....-.-+.+..+|++.+
T Consensus       498 ~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         498 QSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             SSCCCSCCEEEEETTEEEE
T ss_pred             CCCccccCEEEEECCEEEE
Confidence            6544444567777887554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.73  E-value=0.044  Score=37.85  Aligned_cols=193  Identities=8%  Similarity=-0.062  Sum_probs=106.1

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEE
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV   99 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~   99 (250)
                      +...+..|+|.+.++.++.+-..++.|+..++..+.....+..+             ...+.++++..     ..+++..
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~-------------~~~p~~iAvD~-----~~~~lY~   95 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-------------LGSPEGIALDH-----LGRTIFW   95 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT-------------CCCEEEEEEET-----TTTEEEE
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEec-------------cccccEEEEec-----cCCeEEE
Confidence            34457789999887746666677788988888655443333211             23467777764     1344445


Q ss_pred             EEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeee--e--e----ccCeeeeeeccccCccccEEEE
Q 025649          100 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL--D--Q----SGGKRLHLDYSVGGHTAAASCV  171 (250)
Q Consensus       100 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~----~~~~~~~~~~~~~~h~~~v~~~  171 (250)
                      +-...+.|.+.++........... .......++++|...++.-....  .  .    .+....+.+  ....-.....+
T Consensus        96 ~d~~~~~I~~~~~dg~~~~~l~~~-~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i--~~~~~~~P~gl  172 (263)
T d1npea_          96 TDSQLDRIEVAKMDGTQRRVLFDT-GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL--AQDNLGLPNGL  172 (263)
T ss_dssp             EETTTTEEEEEETTSCSCEEEECS-SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE--ECTTCSCEEEE
T ss_pred             eccCCCEEEEEecCCceEEEEecc-cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceee--eeecccccceE
Confidence            556678999999986543322222 22456788898877666522110  0  0    011111111  11122356789


Q ss_pred             EeecCCCCCcEE-EEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCceEEEEe
Q 025649          172 AFSMFGERGKYL-ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       172 ~~~p~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      ++.   +.++.| .+-...+.|...|+.....         .....+. ....+|++.  ++.+..+-...+.|...|
T Consensus       173 aiD---~~~~~lYw~d~~~~~I~~~~~~g~~~---------~~v~~~~-~~P~~lav~--~~~lYwtd~~~~~I~~~~  235 (263)
T d1npea_         173 TFD---AFSSQLCWVDAGTHRAECLNPAQPGR---------RKVLEGL-QYPFAVTSY--GKNLYYTDWKTNSVIAMD  235 (263)
T ss_dssp             EEE---TTTTEEEEEETTTTEEEEEETTEEEE---------EEEEECC-CSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             EEe---ecCcEEEEEeCCCCEEEEEECCCCCe---------EEEECCC-CCcEEEEEE--CCEEEEEECCCCEEEEEE
Confidence            998   555545 4545678899999876522         1112222 234567765  333334433455665544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.50  E-value=0.083  Score=38.29  Aligned_cols=75  Identities=13%  Similarity=0.108  Sum_probs=45.9

Q ss_pred             CeeeEEEcCCCCeEEEEecCC-----C------eEEEEEccCCCCccc--eecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649           23 ICSSVQFIPWKPWEVISGGLD-----S------KLVMWDFSKGRPNKI--VNFGLPENNGNAGQCYNPAFVHAIAIPDAD   89 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~d-----g------~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (250)
                      ++.......+|+ +++.|+.+     +      .+.+||..+++....  ....            +.....+.++.+  
T Consensus        21 ~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~------------~~~~~~~~~~~~--   85 (387)
T d1k3ia3          21 PAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK------------HDMFCPGISMDG--   85 (387)
T ss_dssp             CSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS------------CCCSSCEEEECT--
T ss_pred             ccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCC------------cccceeEEEEec--
Confidence            444444556777 67766642     1      367899988764332  2211            122233455666  


Q ss_pred             ccCCCCCEEEEEeCC-CeEEEEeCCCce
Q 025649           90 MLDKTNKICVVAKGD-GVVDVINIESEL  116 (250)
Q Consensus        90 ~~~~~~~~l~~~~~d-~~i~~~d~~~~~  116 (250)
                          ++++++.|+.+ ..+.+||..+..
T Consensus        86 ----~g~i~v~Gg~~~~~~~~yd~~~~~  109 (387)
T d1k3ia3          86 ----NGQIVVTGGNDAKKTSLYDSSSDS  109 (387)
T ss_dssp             ----TSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             ----CCcEEEeecCCCcceeEecCccCc
Confidence                89998888655 588999988654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.34  E-value=0.089  Score=36.80  Aligned_cols=199  Identities=10%  Similarity=-0.005  Sum_probs=112.2

Q ss_pred             eEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCC
Q 025649           26 SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG  105 (250)
Q Consensus        26 ~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~  105 (250)
                      +.-.+|..+ .|+--+ ..+++++|+++.+.++.+...              ..|.-=.|-       +.+.|+-.. +.
T Consensus        67 sAIMhP~~~-IiALra-g~~LQiFnletK~klks~~~~--------------e~VvfWkWi-------s~~~L~lVT-~t  122 (327)
T d1utca2          67 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTMT--------------DDVTFWKWI-------SLNTVALVT-DN  122 (327)
T ss_dssp             EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEECS--------------SCCCEEEES-------SSSEEEEEC-SS
T ss_pred             hhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEEcC--------------CCcEEEEec-------CCCEEEEEc-CC
Confidence            344688887 676655 468999999999888888744              445444555       355565554 46


Q ss_pred             eEEEEeCCCceeEeec-cCC---CCCCccceeecccceeEEEeeeeeeccC--eeee-------eeccccCccccEEEEE
Q 025649          106 VVDVINIESELNISRS-KST---TKPLKGSQSTSKVNIRDAEMEILDQSGG--KRLH-------LDYSVGGHTAAASCVA  172 (250)
Q Consensus       106 ~i~~~d~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~h~~~v~~~~  172 (250)
                      .|+-|+++....+... ..+   ....+..-..+++.+.++..|.......  ...+       .-+.++||.+.-..+.
T Consensus       123 aVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~  202 (327)
T d1utca2         123 AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFK  202 (327)
T ss_dssp             EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEEC
T ss_pred             ceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEE
Confidence            7999999654333222 211   1244555667888888886665433211  1111       1235667765544444


Q ss_pred             eecCCCCCcEEEEee---CCCeEEEEecCCCcc-eecccccceeeeee---ccCCceeEEEecCCCCCeEEEeeCCceEE
Q 025649          173 FSMFGERGKYLISGG---NDKLVKVWDCSRFQG-VQTSINNDLLIKNI---NLNKKVNWLCTTPTESENLVVCDTSKVVK  245 (250)
Q Consensus       173 ~~p~~~~~~~l~s~~---~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  245 (250)
                      ..-.....++++.+.   ..+.+.|-++..... ..... .+....+.   ...+-..+|..++..| .++.-..-|.|.
T Consensus       203 ~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~-kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~  280 (327)
T d1utca2         203 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-KKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIH  280 (327)
T ss_dssp             CTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCC-CEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEE
T ss_pred             cCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCc-ceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEE
Confidence            320001112333332   235788888766321 11000 01111111   2234567788887544 788888899999


Q ss_pred             EEeCC
Q 025649          246 VYSIS  250 (250)
Q Consensus       246 vw~~~  250 (250)
                      +||++
T Consensus       281 lyDle  285 (327)
T d1utca2         281 LYDLE  285 (327)
T ss_dssp             EEETT
T ss_pred             EEEcc
Confidence            99974

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.18  E-value=0.013  Score=45.65  Aligned_cols=79  Identities=11%  Similarity=0.054  Sum_probs=56.9

Q ss_pred             CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC
Q 025649           44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  123 (250)
Q Consensus        44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  123 (250)
                      |.|.-+|+.+|+.+.....+.              .+.+-.++.      .+.++++|+.||.++.+|.++|+.+.+...
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~--------------p~~~g~lst------agglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL--------------PLWAGVLAT------AGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS--------------CCCSCCEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEcCCCCcEEeecCCCC--------------CCccceeEE------cCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            568888888888877776441              111111111      577888899999999999999999988877


Q ss_pred             CCCCCccceeecccceeEE
Q 025649          124 TTKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~  142 (250)
                      .....-.-+.+..+|++.+
T Consensus       526 ~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         526 GSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             SSCCCSCCEEEEETTEEEE
T ss_pred             CCCccccCEEEEECCEEEE
Confidence            6555555578888886554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.17  E-value=0.18  Score=38.84  Aligned_cols=59  Identities=8%  Similarity=-0.043  Sum_probs=38.2

Q ss_pred             EEEEcccceeeeeeccCCCCCe-----------eeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceec
Q 025649            3 QIIDIRQHCLYKSLRAGHSSIC-----------SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF   62 (250)
Q Consensus         3 ~iwd~~~~~~~~~l~~~h~~~v-----------~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~   62 (250)
                      .-.|+++++....++ .....+           ..+.........++.++.+|.+.++|..+|+.+...+.
T Consensus       273 vAld~~tG~~~W~~Q-~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~  342 (560)
T d1kv9a2         273 LAIRPDTGKLAWHYQ-VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKF  342 (560)
T ss_dssp             EEECTTTCCEEEEEE-SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred             EEecCCccceeEEEe-ccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccc
Confidence            445778898887776 322211           22222222223677899999999999999998766553

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.11  E-value=0.016  Score=45.09  Aligned_cols=49  Identities=10%  Similarity=0.025  Sum_probs=40.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEE
Q 025649           94 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (250)
                      .+.++++|+.||.++.+|.++|+.+.+..........-+.|..+|++.+
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            4678888999999999999999999888777555555677888887665

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.13  Score=35.37  Aligned_cols=174  Identities=6%  Similarity=-0.106  Sum_probs=93.8

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCC---CccceecCCCCCCCCCCcccCCC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR---PNKIVNFGLPENNGNAGQCYNPA   78 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
                      |+-.++.+.+....+.  ....+.+|+|++..+.+..+-..++.|.--++....   ....+...            ...
T Consensus        12 I~~~~l~~~~~~~~~~--~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~------------~~~   77 (266)
T d1ijqa1          12 VRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------------DIQ   77 (266)
T ss_dssp             EEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS------------SCS
T ss_pred             EEEEECCCCcceeeeC--CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeC------------CCC
Confidence            5667776655443344  445677999998877455555566777766664321   11111111            123


Q ss_pred             ceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeee-ee-----e-cc
Q 025649           79 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-LD-----Q-SG  151 (250)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~-~~  151 (250)
                      .+.++++.+     ..+++..+-...+.|.+.++............ ......++++|...++.-... ..     . .+
T Consensus        78 ~p~glAvD~-----~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~-~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d  151 (266)
T d1ijqa1          78 APDGLAVDW-----IHSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  151 (266)
T ss_dssp             CCCEEEEET-----TTTEEEEEETTTTEEEEEETTSSSEEEEEECT-TCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CcceEEEee-----ccceEEEEecCCCEEEeEecCCceEEEEEcCC-CCCcceEEEEcccCeEEEeccCCCcceeEeccC
Confidence            345666654     13455555567789999999876544333322 245678888886555542210 00     0 01


Q ss_pred             CeeeeeeccccCccccEEEEEeecCCCCCc-EEEEeeCCCeEEEEecCCC
Q 025649          152 GKRLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRF  200 (250)
Q Consensus       152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~l~s~~~d~~i~iwd~~~~  200 (250)
                      +...+.+  ....-.....+++.   +.++ +..+-...+.|...|+...
T Consensus       152 Gs~~~~l--~~~~~~~p~gl~iD---~~~~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         152 GVDIYSL--VTENIQWPNGITLD---LLSGRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             SCCEEEE--ECSSCSCEEEEEEE---TTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCceecc--cccccceeeEEEee---ccccEEEEecCCcCEEEEEECCCC
Confidence            1111111  11223456789998   5554 4445466789999898764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.70  E-value=0.017  Score=44.98  Aligned_cols=79  Identities=9%  Similarity=0.070  Sum_probs=56.1

Q ss_pred             CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC
Q 025649           44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  123 (250)
Q Consensus        44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  123 (250)
                      |.|.-||+.+++.+...+.+.              ...+-..+-      .+.++++|+.||.++.+|.++|+.+.+...
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~--------------p~~gg~lst------agglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS--------------PWNGGTLTT------AGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS--------------SCCCCEEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccEEEeCCCCCceEeeecCCC--------------CCCCceEEE------cCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            468889999999888877441              111111111      577888899999999999999999988777


Q ss_pred             CCCCCccceeecccceeEE
Q 025649          124 TTKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~  142 (250)
                      .....-.-+.|..+|++.+
T Consensus       517 ~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         517 GTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             SSCCCSCCEEEEETTEEEE
T ss_pred             CCCccccCEEEEECCEEEE
Confidence            6444444466777887654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.68  E-value=0.016  Score=45.36  Aligned_cols=79  Identities=6%  Similarity=-0.019  Sum_probs=55.8

Q ss_pred             CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccC
Q 025649           44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  123 (250)
Q Consensus        44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  123 (250)
                      |.|.-||+.+++.+.....+              ....+-.++.      .+.+++.|+.||.++.+|.++|+.+.+...
T Consensus       453 G~l~A~D~~TG~~~W~~~~~--------------~~~~gg~lsT------agglVF~G~~Dg~l~A~Da~TGe~LW~~~~  512 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER--------------FAVWGGTMAT------AGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES--------------SCCCSBCEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ceEEEEeCCCCceecccCCC--------------CCCccceeEe------cCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence            56777787777776655433              1122111221      577888899999999999999999988877


Q ss_pred             CCCCCccceeecccceeEE
Q 025649          124 TTKPLKGSQSTSKVNIRDA  142 (250)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~  142 (250)
                      .....-.-+.|..+|++.+
T Consensus       513 ~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         513 PSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             SSCCCSCCEEEEETTEEEE
T ss_pred             CCCcccCCeEEEECCEEEE
Confidence            7655666677888887655

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.45  E-value=0.022  Score=44.36  Aligned_cols=59  Identities=14%  Similarity=0.019  Sum_probs=44.5

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG   63 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~   63 (250)
                      |.-+|+.+|+.+.... .+ .++..=..+..+. ++++|+.||.++.+|.++|+.+.+++.+
T Consensus       468 l~AiD~~TG~i~W~~~-~~-~p~~~g~lstagg-lVF~Gt~dg~l~A~Da~TGe~LW~~~~~  526 (582)
T d1flga_         468 LRAMDPVSGKVVWEHK-EH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             EEEECTTTCCEEEEEE-ES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEEcCCCCcEEeecC-CC-CCCccceeEEcCC-eEEEeCCCCeEEEEECCCCcEeEEEECC
Confidence            4568889999988887 33 2333222334555 7888999999999999999999999866

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.07  E-value=0.52  Score=36.35  Aligned_cols=70  Identities=11%  Similarity=0.013  Sum_probs=39.2

Q ss_pred             CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEee
Q 025649           44 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  120 (250)
Q Consensus        44 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  120 (250)
                      ..+...|.++|+.+..++....+.-.  ..+..+.....+....     .....++.++.+|.+.++|..+++.+..
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd--~D~~~~~~l~~~~~~g-----~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWD--FAGVNQMVLTDQPVNG-----KMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSC--CCCCCCCEEEEEEETT-----EEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cceeeeeccchhheecccccCccccc--cccccccceeeeeccC-----ccccceeeccccceEEEEecCCCcEeee
Confidence            46777888999988777743111000  0011111112222211     0112567888999999999999987643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.03  E-value=0.33  Score=33.89  Aligned_cols=213  Identities=9%  Similarity=0.066  Sum_probs=114.8

Q ss_pred             CcEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCC-CCccceecCCCCCCCCCCcccCCCc
Q 025649            1 MWQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAF   79 (250)
Q Consensus         1 ti~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   79 (250)
                      +++++|+++.+.++.+.  ...+|.--.|-.+..  |+-... ..|.-|+++.. .+.+.+....         ......
T Consensus        84 ~LQiFnletK~klks~~--~~e~VvfWkWis~~~--L~lVT~-taVYHW~~~g~s~P~k~fdR~~---------~L~~~Q  149 (327)
T d1utca2          84 TLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNT--VALVTD-NAVYHWSMEGESQPVKMFDRHS---------SLAGCQ  149 (327)
T ss_dssp             EEEEEETTTTEEEEEEE--CSSCCCEEEESSSSE--EEEECS-SEEEEEESSSSCCCEEEEECCG---------GGTTCE
T ss_pred             eEEEEehhHhhhhceEE--cCCCcEEEEecCCCE--EEEEcC-CceEEEcccCCCCchhhhhhcc---------cccCce
Confidence            47899999999988887  566788888877664  544443 47999999542 4555554221         112456


Q ss_pred             eeEEecCCCcccCCCCCEEEEEe---C----CCeEEEEeCCCceeEeec---------cCC---CCCCccceeec-ccce
Q 025649           80 VHAIAIPDADMLDKTNKICVVAK---G----DGVVDVINIESELNISRS---------KST---TKPLKGSQSTS-KVNI  139 (250)
Q Consensus        80 v~~~~~~~~~~~~~~~~~l~~~~---~----d~~i~~~d~~~~~~~~~~---------~~~---~~~~~~~~~~~-~~~~  139 (250)
                      |-....++      +.++++..+   .    .|.+.+|..+.+......         ...   ....+.+.+.- +.+.
T Consensus       150 IInY~~d~------~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~  223 (327)
T d1utca2         150 IINYRTDA------KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  223 (327)
T ss_dssp             EEEEEECT------TSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEE
T ss_pred             EEEEEECC------CCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCc
Confidence            77777777      777765543   2    367889998865432211         000   00111111111 1111


Q ss_pred             eEEEeeeeeeccC-e--eeeee---ccccCccccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceee
Q 025649          140 RDAEMEILDQSGG-K--RLHLD---YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI  213 (250)
Q Consensus       140 ~~~~~~~~~~~~~-~--~~~~~---~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  213 (250)
                      .|-.......... .  ..+..   ..-..-.+-..++..+   +.-..+..-+.-|.|.+||+.++.         ++.
T Consensus       224 kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs---~kygiiyviTK~G~i~lyDleTgt---------~i~  291 (327)
T d1utca2         224 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS---EKHDVVFLITKYGYIHLYDLETGT---------CIY  291 (327)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE---TTTTEEEEEETTSEEEEEETTTCC---------EEE
T ss_pred             EEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee---ccCCEEEEEecCcEEEEEEccccc---------EEE
Confidence            1100000000000 0  00101   1111223445677777   666677777888999999999994         444


Q ss_pred             eeeccCCceeEEEecCCCCCeEEEeeCCceEEE
Q 025649          214 KNINLNKKVNWLCTTPTESENLVVCDTSKVVKV  246 (250)
Q Consensus       214 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~v  246 (250)
                      ...--.+.|...+-.. +..-++....+|.|..
T Consensus       292 ~nRIs~~~iF~~a~~~-~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         292 MNRISGETIFVTAPHE-ATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEECCSSCEEEEEEET-TTTEEEEEETTSEEEE
T ss_pred             EeecCCCceEEeccCC-CCceEEEECCCCeEEE
Confidence            4444455565444443 3334555567776643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.94  E-value=0.033  Score=43.31  Aligned_cols=59  Identities=17%  Similarity=0.035  Sum_probs=44.2

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG   63 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~   63 (250)
                      |.-||+.++|.+.+.+ .. .+...=..+-.+. ++++|+.||.++.+|.++|+.+..++.+
T Consensus       459 l~AiD~~tGk~~W~~~-~~-~p~~gg~lstagg-lVF~G~~dg~l~A~Da~TGe~LW~~~~~  517 (573)
T d1kb0a2         459 LLAWDPVAQKAAWSVE-HV-SPWNGGTLTTAGN-VVFQGTADGRLVAYHAATGEKLWEAPTG  517 (573)
T ss_dssp             EEEEETTTTEEEEEEE-ES-SSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEeCCCCCceEeeec-CC-CCCCCceEEEcCC-EEEEECCCCeEEEEECCCCcEeEEEECC
Confidence            5568999999998887 22 2222212233455 7888999999999999999999999865

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.65  E-value=0.47  Score=33.86  Aligned_cols=164  Identities=18%  Similarity=0.149  Sum_probs=85.2

Q ss_pred             CeeeEEEcCCCCeEEEEecC------------CCeEEEEEccCCCCc-cceecCCCCCCCCCCcccCCCceeEEecCCCc
Q 025649           23 ICSSVQFIPWKPWEVISGGL------------DSKLVMWDFSKGRPN-KIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD   89 (250)
Q Consensus        23 ~v~~l~~~~~~~~~l~s~s~------------dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (250)
                      .-.+|...|+|. .+++++.            .|.+.++|+.+.+.. ..+....   .......+++   +.+.+..  
T Consensus        36 G~EDi~~~~dg~-~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~---~~~~~~~f~P---hGi~l~~--  106 (340)
T d1v04a_          36 GSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIG---NTLDISSFNP---HGISTFI--  106 (340)
T ss_dssp             CCCEEEECTTSE-EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEEC---SSSCGGGCCE---EEEEEEE--
T ss_pred             CcceEEECCCCc-EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecC---CCCCCcceec---cceeEEE--
Confidence            456789999997 4444432            488999998765432 2222110   0000111222   3333211  


Q ss_pred             ccCCCCC-EEEEE---eCCCeEEEEeCCCce--e--EeeccCCCCCCccceeecccceeEEEeee--eeec-------c-
Q 025649           90 MLDKTNK-ICVVA---KGDGVVDVINIESEL--N--ISRSKSTTKPLKGSQSTSKVNIRDAEMEI--LDQS-------G-  151 (250)
Q Consensus        90 ~~~~~~~-~l~~~---~~d~~i~~~d~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~-  151 (250)
                        +.+++ +|++.   ....+|.+|++....  .  ......+.......++...++..+++...  ....       . 
T Consensus       107 --~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~  184 (340)
T d1v04a_         107 --DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG  184 (340)
T ss_dssp             --CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTT
T ss_pred             --cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhc
Confidence              11454 44444   245678888875422  2  12334444456778888888888885211  0000       0 


Q ss_pred             Ceee-------eeeccccCccccEEEEEeecCCCCCcEEEE-eeCCCeEEEEecCCC
Q 025649          152 GKRL-------HLDYSVGGHTAAASCVAFSMFGERGKYLIS-GGNDKLVKVWDCSRF  200 (250)
Q Consensus       152 ~~~~-------~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s-~~~d~~i~iwd~~~~  200 (250)
                      ....       .........-...+.|+++   |++++|+. -+..++|+.|++...
T Consensus       185 ~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s---~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         185 LAWSFVTYYSPNDVRVVAEGFDFANGINIS---PDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             CCCEEEEEECSSCEEEEEEEESSEEEEEEC---TTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCceeEEEEcCCceEEEcCCCCccceeEEC---CCCCEEEEEeCCCCeEEEEEeCCC
Confidence            0000       0001111122346889999   88876655 456889999998764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.53  E-value=0.026  Score=44.12  Aligned_cols=59  Identities=12%  Similarity=-0.112  Sum_probs=44.0

Q ss_pred             cEEEEcccceeeeeeccCCCCCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecC
Q 025649            2 WQIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG   63 (250)
Q Consensus         2 i~iwd~~~~~~~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~   63 (250)
                      |.-||+.+++.+....  +..++..=..+..+. +++.|+.||.++.+|.++|+.+..++.+
T Consensus       455 l~A~D~~TG~~~W~~~--~~~~~~gg~lsTagg-lVF~G~~Dg~l~A~Da~TGe~LW~~~~~  513 (596)
T d1w6sa_         455 IKAYNAITGDYKWEKM--ERFAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (596)
T ss_dssp             EEEECTTTCCEEEEEE--ESSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEEeCCCCceecccC--CCCCCccceeEecCC-EEEEECCCCeEEEEECCCCcEeeEEECC
Confidence            5678999999887765  333333222334455 7888999999999999999999999865

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.28  E-value=0.48  Score=32.39  Aligned_cols=152  Identities=5%  Similarity=-0.078  Sum_probs=81.8

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      ..+.+|++..-+..+.++-...+.|.+.++..... ..+...            .......+++.|      ...++...
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~~------------~l~~p~~l~vdp------~~g~ly~t  139 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDT------------GLVNPRGIVTDP------VRGNLYWT  139 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECS------------SCSSEEEEEEET------TTTEEEEE
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceE-EEEecc------------cccCCcEEEEec------ccCcEEEe
Confidence            46788898876653555666778999999864433 223211            124567888887      55555444


Q ss_pred             e-CCC--eEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEee-------eeeeccCeeeeeeccccCccccEEEE
Q 025649          102 K-GDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME-------ILDQSGGKRLHLDYSVGGHTAAASCV  171 (250)
Q Consensus       102 ~-~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~h~~~v~~~  171 (250)
                      . ..+  .|.--++......... ...-.....+++++.++.+.-+.       ..+. +....+.+  +.+-. ...++
T Consensus       140 ~~~~~~~~I~r~~~dG~~~~~i~-~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~-~g~~~~~v--~~~~~-~P~~l  214 (263)
T d1npea_         140 DWNRDNPKIETSHMDGTNRRILA-QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP-AQPGRRKV--LEGLQ-YPFAV  214 (263)
T ss_dssp             ECCSSSCEEEEEETTSCCCEEEE-CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET-TEEEEEEE--EECCC-SEEEE
T ss_pred             ecCCCCcEEEEecCCCCCceeee-eecccccceEEEeecCcEEEEEeCCCCEEEEEEC-CCCCeEEE--ECCCC-CcEEE
Confidence            3 222  3444456543322222 22224456788887766654211       1111 11111111  22222 23577


Q ss_pred             EeecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649          172 AFSMFGERGKYLISGGNDKLVKVWDCSRFQ  201 (250)
Q Consensus       172 ~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~  201 (250)
                      ++.    ++.+..+-...+.|...|..+++
T Consensus       215 av~----~~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         215 TSY----GKNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             EEE----TTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEE----CCEEEEEECCCCEEEEEECCCCc
Confidence            775    45555665667889999988873

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.20  E-value=0.79  Score=31.29  Aligned_cols=155  Identities=6%  Similarity=-0.117  Sum_probs=86.2

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      ..+..|++.+.+..+..+-...+.|.+.++........+...             .....++++.|      ...+|...
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~-------------~~~P~~l~vd~------~~g~ly~~  137 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN-------------GSKPRAIVVDP------VHGFMYWT  137 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT-------------TCCEEEEEEET------TTTEEEEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCC-------------CCCcceEEEEc------ccCeEEEe
Confidence            456788998777656667677789999998754433333311             24567888887      44444443


Q ss_pred             e--CCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEe-------eeeeeccCeeeeeeccccCccccEEEEE
Q 025649          102 K--GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM-------EILDQSGGKRLHLDYSVGGHTAAASCVA  172 (250)
Q Consensus       102 ~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~h~~~v~~~~  172 (250)
                      .  ..+.|...++........... .-.....+++++.++.+.-+       ...+. ++.....+...........+++
T Consensus       138 ~~~~~~~I~r~~~dGs~~~~l~~~-~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~-dG~~~~~~~~~~~~~~~p~~la  215 (266)
T d1ijqa1         138 DWGTPAKIKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDV-NGGNRKTILEDEKRLAHPFSLA  215 (266)
T ss_dssp             ECSSSCEEEEEETTSCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEET-TSCSCEEEEECTTTTSSEEEEE
T ss_pred             ccCCCcceeEeccCCCceeccccc-ccceeeEEEeeccccEEEEecCCcCEEEEEEC-CCCCEEEEEeCCCcccccEEEE
Confidence            2  345677777765433322222 22455778888877665521       11111 1111111222222233456777


Q ss_pred             eecCCCCCcEEEEeeCCCeEEEEecCCCc
Q 025649          173 FSMFGERGKYLISGGNDKLVKVWDCSRFQ  201 (250)
Q Consensus       173 ~~p~~~~~~~l~s~~~d~~i~iwd~~~~~  201 (250)
                      +.    ++.+..+-..++.|...+..++.
T Consensus       216 v~----~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         216 VF----EDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             EE----TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EE----CCEEEEEECCCCeEEEEECCCCc
Confidence            75    34555555567888888877764

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.69  E-value=1.6  Score=31.22  Aligned_cols=73  Identities=12%  Similarity=0.260  Sum_probs=41.0

Q ss_pred             EEEEEe--ecCCCCCc-EEEEeeCCCeEEEEecCCCcc--eecccccceeeeeeccCCceeEEEecCCCCCeEEEeeCCc
Q 025649          168 ASCVAF--SMFGERGK-YLISGGNDKLVKVWDCSRFQG--VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK  242 (250)
Q Consensus       168 v~~~~~--~p~~~~~~-~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  242 (250)
                      ++.+++  +|  .+|. +++....+|.+..|.+.....  ..    ..+++ ...-...+-.+.+.+ +.+.|+.+-.+.
T Consensus       130 vYGlc~y~~~--~~g~~~afv~~k~G~v~q~~l~~~~~g~v~----~~lvr-~f~~~~q~EGCVvDd-e~~~LyisEE~~  201 (353)
T d1h6la_         130 VYGFSLYHSQ--KTGKYYAMVTGKEGEFEQYELNADKNGYIS----GKKVR-AFKMNSQTEGMAADD-EYGSLYIAEEDE  201 (353)
T ss_dssp             CCCEEEEECT--TTCCEEEEEECSSSEEEEEEEEECTTSSEE----EEEEE-EEECSSCEEEEEEET-TTTEEEEEETTT
T ss_pred             ceEEEEEecC--CCCeEEEEEEcCCceEEEEEEEcCCCCcee----eEeee-ccCCCCccceEEEeC-CCCcEEEecCcc
Confidence            444444  52  2354 556667789998887743211  11    02222 234445677888876 555677777776


Q ss_pred             eEEEEe
Q 025649          243 VVKVYS  248 (250)
Q Consensus       243 ~i~vw~  248 (250)
                      -|..++
T Consensus       202 Giw~~~  207 (353)
T d1h6la_         202 AIWKFS  207 (353)
T ss_dssp             EEEEEE
T ss_pred             ceEEEE
Confidence            555444

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.44  E-value=1.5  Score=28.87  Aligned_cols=148  Identities=9%  Similarity=-0.002  Sum_probs=75.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeEeeccCCCC------CCccceeeccc---ceeEEEeeeeeeccCeeeeeeccccCc
Q 025649           94 TNKICVVAKGDGVVDVINIESELNISRSKSTTK------PLKGSQSTSKV---NIRDAEMEILDQSGGKRLHLDYSVGGH  164 (250)
Q Consensus        94 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h  164 (250)
                      +.++++++...|.+.++-+..++.....+.+..      ..+..+-|-.|   |+..-+.-..+...  ..+ -+++..-
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~--~GE-E~~i~sp  101 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR--PGE-EQRLEAV  101 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCSSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTS--TTC-EEECTTS
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEecccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCC--CCe-eeEecCC
Confidence            456888888899999999888776654433310      11111111111   11111111111110  000 1122232


Q ss_pred             c-ccEEEEEeecCCCCCcEEEEeeCCCeEEEEecCCCcceecccccceeeeeeccCCceeEEEecCCCCCeEEEeeC-Cc
Q 025649          165 T-AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT-SK  242 (250)
Q Consensus       165 ~-~~v~~~~~~p~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~  242 (250)
                      + -.|.++++.    +.+..++|+......+|-+..++......-+..-....-...-|..+-+...+.+-|+++.. .|
T Consensus       102 k~vRI~S~~yd----dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG  177 (313)
T d2hu7a1         102 KPMRILSGVDT----GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG  177 (313)
T ss_dssp             CSBEEEEEEEC----SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTE
T ss_pred             ceEEEEEeeec----CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccC
Confidence            3 568888875    66788899988888999888875432111111111111122335555554434555666665 77


Q ss_pred             eEEEEe
Q 025649          243 VVKVYS  248 (250)
Q Consensus       243 ~i~vw~  248 (250)
                      .+++++
T Consensus       178 ~lri~t  183 (313)
T d2hu7a1         178 GLRVFD  183 (313)
T ss_dssp             EEEEEC
T ss_pred             CEEEec
Confidence            888775

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.55  E-value=2.1  Score=29.00  Aligned_cols=51  Identities=12%  Similarity=0.018  Sum_probs=26.0

Q ss_pred             CcEEEEccccee--eeeeccCCCCCeeeEEEcCCCCeEEEEecCC---------CeEEEEEccCCC
Q 025649            1 MWQIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLD---------SKLVMWDFSKGR   55 (250)
Q Consensus         1 ti~iwd~~~~~~--~~~l~~~h~~~v~~l~~~~~~~~~l~s~s~d---------g~v~iwd~~~~~   55 (250)
                      +|.+||+++++-  +..+. .....-..+. . ++. +++.|+..         ..+.+||..+.+
T Consensus        20 ~~~~yd~~t~~W~~~~~~p-~~R~~~~~~~-~-~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~~~   81 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQ-VPRSGLAGCV-V-GGL-LYAVGGRNNSPDGNTDSSALDCYNPMTNQ   81 (288)
T ss_dssp             CEEEEETTTTEEEECCCCS-SCCBSCEEEE-E-TTE-EEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             eEEEEECCCCeEEECCCCC-CccceeEEEE-E-CCE-EEEEeCcccCCCCccccchhhhccccccc
Confidence            367899988753  33343 2222222222 2 444 66666531         346677776543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.96  E-value=3.5  Score=29.71  Aligned_cols=146  Identities=10%  Similarity=-0.032  Sum_probs=69.9

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      ....-+++++... +++.|+.++ ++|-.+..-+.  .+.... . .........-..|..++++.        ..+++.
T Consensus        37 ~~~~LLAVsn~~G-Ll~aa~~~~-l~V~~t~~l~~--~~~~~~-~-~~~~~~~~~ip~v~~vafs~--------d~l~v~  102 (381)
T d1xipa_          37 ASLQNLDISNSKS-LFVAASGSK-AVVGELQLLRD--HITSDS-T-PLTFKWEKEIPDVIFVCFHG--------DQVLVS  102 (381)
T ss_dssp             SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHH--HHHSSS-C-CCCCSEEEECTTEEEEEEET--------TEEEEE
T ss_pred             cccceEEEeCCCC-EEEEECCCE-EEEEEHHHHHH--HhhccC-C-CCcceeccCCCCeEEEEeeC--------CEEEEE
Confidence            4577888888777 788888774 66666432110  000000 0 00000001123577788763        345544


Q ss_pred             eCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEE----eeeeeeccCeeeeeec---cccCccccEEEEEee
Q 025649          102 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE----MEILDQSGGKRLHLDY---SVGGHTAAASCVAFS  174 (250)
Q Consensus       102 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~  174 (250)
                       .++.+..++...-......... ...+..+..+|....++.    .+..........+...   .+. -.+.+.++.|+
T Consensus       103 -~~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~v~ws  179 (381)
T d1xipa_         103 -TRNALYSLDLEELSEFRTVTSF-EKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFD-VTNSQLAVLLK  179 (381)
T ss_dssp             -ESSEEEEEESSSTTCEEEEEEC-SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEE-ECSSEEEEEET
T ss_pred             -eCCCEEEEEeeccccccccccc-cccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEE-ecCCceEEEEe
Confidence             4466788887763322221111 234566666665544432    1122222222221110   111 12457778887


Q ss_pred             cCCCCCcEEEEee
Q 025649          175 MFGERGKYLISGG  187 (250)
Q Consensus       175 p~~~~~~~l~s~~  187 (250)
                         +.|..++++.
T Consensus       180 ---~kgkq~v~~~  189 (381)
T d1xipa_         180 ---DRSFQSFAWR  189 (381)
T ss_dssp             ---TSCEEEEEEE
T ss_pred             ---CCcEEEEEeC
Confidence               6777777764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=86.66  E-value=3.9  Score=28.88  Aligned_cols=29  Identities=14%  Similarity=0.209  Sum_probs=21.6

Q ss_pred             CceeEEEecCCCCCeEEE-eeCCceEEEEeC
Q 025649          220 KKVNWLCTTPTESENLVV-CDTSKVVKVYSI  249 (250)
Q Consensus       220 ~~v~~~~~~~~~~~~l~s-~~~d~~i~vw~~  249 (250)
                      ...+.++++| |+++|+. -...+.|+.|++
T Consensus       206 ~~pNGI~~s~-d~~~lyVa~t~~~~i~~y~~  235 (340)
T d1v04a_         206 DFANGINISP-DGKYVYIAELLAHKIHVYEK  235 (340)
T ss_dssp             SSEEEEEECT-TSSEEEEEEGGGTEEEEEEE
T ss_pred             CccceeEECC-CCCEEEEEeCCCCeEEEEEe
Confidence            4688899997 7766554 556788988875

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.54  E-value=4.5  Score=29.48  Aligned_cols=103  Identities=6%  Similarity=-0.128  Sum_probs=60.8

Q ss_pred             CCCCeeeEEEcCCCCeEEEEecCC----CeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCCCcccCCCC
Q 025649           20 HSSICSSVQFIPWKPWEVISGGLD----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN   95 (250)
Q Consensus        20 h~~~v~~l~~~~~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   95 (250)
                      +.-.+..++++|+++.++++-+.+    .+|++.|+.+++.+...- .             ......++|.+      ++
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~-------------~~~~~~~~W~~------D~  182 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-E-------------RVKFSCMAWTH------DG  182 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-E-------------EECSCCEEECT------TS
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-c-------------cccccceEEcC------CC
Confidence            333456778999999444443333    479999999997653221 1             11124677887      77


Q ss_pred             CEEEEEeCC----------------CeEEEEeCCCceeE--eeccCCC-CCCccceeecccceeEE
Q 025649           96 KICVVAKGD----------------GVVDVINIESELNI--SRSKSTT-KPLKGSQSTSKVNIRDA  142 (250)
Q Consensus        96 ~~l~~~~~d----------------~~i~~~d~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~  142 (250)
                      +.|+-...+                ..|.++.+.+....  ....... ......+..++++++++
T Consensus       183 ~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~  248 (430)
T d1qfma1         183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVL  248 (430)
T ss_dssp             SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred             CEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceee
Confidence            766544322                35778887764322  1222221 23455677889999887

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.82  E-value=5.2  Score=29.49  Aligned_cols=60  Identities=7%  Similarity=-0.016  Sum_probs=37.7

Q ss_pred             CCeeeEEEcCCCCeEEEEecCCCeEEEEEccCCCCccceecCCCCCCCCCCcccCCCceeEEecCC
Q 025649           22 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD   87 (250)
Q Consensus        22 ~~v~~l~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   87 (250)
                      ..-.+|+|.|+++ +|++--..|.|++++..+++.........     .............++++|
T Consensus        27 ~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~~-----~~~~~~ge~GLLgia~~P   86 (450)
T d1crua_          27 NKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPE-----IVNDADGQNGLLGFAFHP   86 (450)
T ss_dssp             SSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTT-----CCCCTTSSCSEEEEEECT
T ss_pred             CCceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeecccCCc-----cccccCCCCceeeEEeCC
Confidence            4567999999998 77776567999999887765433222110     000011234567888887

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.59  E-value=5.7  Score=28.91  Aligned_cols=83  Identities=10%  Similarity=0.134  Sum_probs=47.7

Q ss_pred             CcEEEEcccceeee-eeccCCCCCeeeEEEcCCCCeEEEEecC---------------CCeEEEEEccCCCCccceecCC
Q 025649            1 MWQIIDIRQHCLYK-SLRAGHSSICSSVQFIPWKPWEVISGGL---------------DSKLVMWDFSKGRPNKIVNFGL   64 (250)
Q Consensus         1 ti~iwd~~~~~~~~-~l~~~h~~~v~~l~~~~~~~~~l~s~s~---------------dg~v~iwd~~~~~~~~~~~~~~   64 (250)
                      +|++.|+++++.+. .+.   ......++|+++++.++.+.-.               ...|..|.+.+......+-.+.
T Consensus       152 ~l~v~Dl~tg~~~~~~i~---~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e  228 (430)
T d1qfma1         152 TIKFMKVDGAKELPDVLE---RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF  228 (430)
T ss_dssp             EEEEEETTTTEEEEEEEE---EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC
T ss_pred             eeEEeccCcceecccccc---cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccccccccc
Confidence            47899999998764 333   1223578999999844444311               1357777776654332222221


Q ss_pred             CCCCCCCCcccCCCceeEEecCCCcccCCCCCEEEEE
Q 025649           65 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  101 (250)
Q Consensus        65 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  101 (250)
                      .+         .+..+..+..++      ++++++..
T Consensus       229 ~d---------~~~~~~~~~~s~------d~~~l~i~  250 (430)
T d1qfma1         229 PD---------EPKWMGGAELSD------DGRYVLLS  250 (430)
T ss_dssp             TT---------CTTCEEEEEECT------TSCEEEEE
T ss_pred             cc---------CCceEEeeeccC------CcceeeEE
Confidence            00         123455666676      88877644

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=84.22  E-value=4  Score=26.86  Aligned_cols=151  Identities=9%  Similarity=-0.036  Sum_probs=82.6

Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCceeEeeccCCCCCCccceeecccceeEEEeeeeeeccCe----
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK----  153 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  153 (250)
                      -.|.+++..       +.+.+.+|+......+|-++.|+.......+.-..++.+    .+++++-.+...+....    
T Consensus       104 vRI~S~~yd-------dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI----~~d~I~G~g~~~g~~~sfF~a  172 (313)
T d2hu7a1         104 MRILSGVDT-------GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI----RGDLIAGLGFFGGGRVSLFTS  172 (313)
T ss_dssp             BEEEEEEEC-------SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEE----ETTEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEeeec-------CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEec----cCCeEEEEeeecCCcceEEEE
Confidence            345566655       678889998888899999998877655444322222222    24444433222221110    


Q ss_pred             --eeeeeccccCccccEEEEEeecCCCCCcEEEEeeC---CCeEEEEecCCCcceeccccccee-eeeec-cCCceeEEE
Q 025649          154 --RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN---DKLVKVWDCSRFQGVQTSINNDLL-IKNIN-LNKKVNWLC  226 (250)
Q Consensus       154 --~~~~~~~~~~h~~~v~~~~~~p~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~  226 (250)
                        ..--++.+....+.++...+.   +..+. +++-+   +....-+|+++++-...    ++. ..+.. ..-.|.++-
T Consensus       173 dl~SG~lri~tpkeGS~~~ay~~---~gnKV-~sdyEt~gEsywit~D~~s~~yerv----e~P~kd~~sy~p~~I~~~~  244 (313)
T d2hu7a1         173 NLSSGGLRVFDSGEGSFSSASIS---PGMKV-TAGLETAREARLVTVDPRDGSVEDL----ELPSKDFSSYRPTAITWLG  244 (313)
T ss_dssp             ETTTEEEEEECCSSEEEEEEEEC---TTSCE-EEEEEESSCEEEEEECTTTCCEEEC----CCSSCHHHHHCCSEEEEEE
T ss_pred             ecccCCEEEecCCCCcccceeEc---cCcee-eeccCCCCceEEEEEecccCceeee----ecCcccceeecceEEEeee
Confidence              001134455667778887777   54444 55432   22333558886532110    000 01111 123577777


Q ss_pred             ecCCCCCeEEEeeCCceEEEEe
Q 025649          227 TTPTESENLVVCDTSKVVKVYS  248 (250)
Q Consensus       227 ~~~~~~~~l~s~~~d~~i~vw~  248 (250)
                      +.| ++++++.+-.||.-+++.
T Consensus       245 Y~P-dd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         245 YLP-DGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             ECT-TSCEEEEEEETTEEEEEE
T ss_pred             eCC-CCcEEEEEecCCchheee
Confidence            887 777778888899888774

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=84.08  E-value=6.3  Score=29.01  Aligned_cols=34  Identities=24%  Similarity=0.206  Sum_probs=26.9

Q ss_pred             CceeEEecCCCcccCCCCCEEEEEeCCCeEEEEeCCCcee
Q 025649           78 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  117 (250)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~  117 (250)
                      ..-++|+|.|      +++++++--..|.|++++..++..
T Consensus        27 ~~P~~la~~p------dg~llVter~~G~i~~v~~~~g~~   60 (450)
T d1crua_          27 NKPHALLWGP------DNQIWLTERATGKILRVNPESGSV   60 (450)
T ss_dssp             SSEEEEEECT------TSCEEEEETTTCEEEEECTTTCCE
T ss_pred             CCceEEEEeC------CCeEEEEEecCCEEEEEECCCCcE
Confidence            4567999998      898887765579999998877653