Citrus Sinensis ID: 025651

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
MELRGSHNVRGTHAATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLIGNDAVSSKKPANITLRVKSKPRTSFVGRSVSTENDNLSSDGEADDDGDDDEIVVKKVHRMEDVDLSDGAACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKRKQRPASSATA
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
melrgshnvrgthaattgggredcwsegatgtlIEAWGDRYVRlnrghlrqkDWKEVAESVNsrengvkpkktdiqcKNRIDTLKKKYKiekakpppskwpfyyrldsligndavsskkpanitlrvkskprtsfvgrsvstendnlssdgeadddgdddeIVVKKVHrmedvdlsdgAACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKskrkqrpassata
melrgshnvrgthaattgggredcwsEGATGTLIEAWGDRYVRLNRghlrqkdwKEVAesvnsrengvkpkktdiqcknridtlkkkykiekakpppskwpfYYRLDSLIGndavsskkpanitlrvkskprtsfvgrsvstendnlssdgeadddgddDEIVVKKVHrmedvdlsdgaaCRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLeiqkskrkqrpassata
MELRGSHNVRgthaattgggREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLkkkykiekakpppSKWPFYYRLDSLIGNDAVSSKKPANITLRVKSKPRTSFVGRSVSTENDNLSSdgeadddgdddeIVVKKVHRMEDVDLSDGAACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKRKQRPASSATA
*********************EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDW********************************************KWPFYYRLDSLIGND*************************************************VVKKVHRMEDVDLSDGAACRELARAILKFGEIYERIE*************RLEFIKDVECERMNMFMG********************
****************************ATGTLIEAWGDRYVRLN*GHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK**************PFYYRLDSL*********************************************************************AACRELA************************************CERMNMF**********************
******************GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLIGNDAVSSKKPANITLRVKSKPRTSFVGRSVS****************DDDEIVVKKVHRMEDVDLSDGAACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLE****************
**********************DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLIGND*****************************************************************AACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSK***********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MELRGSHNVRGTHAATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLIGNDAVSSKKPANITLRVKSKPRTSFVGRSVSTENDNLSSDGEADDDGDDDEIVVKKVHRMEDVDLSDGAACRELARAILKFGEIxxxxxxxxxxxxxxxxxxxxxFIKDVECERMNMFMGAQLEIQKSKRKQRPASSATA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
255574826274 transcription factor, putative [Ricinus 0.916 0.835 0.697 3e-82
224098720251 predicted protein [Populus trichocarpa] 0.84 0.836 0.694 1e-79
225439493291 PREDICTED: uncharacterized protein LOC10 0.876 0.752 0.576 5e-64
359486490 613 PREDICTED: uncharacterized protein LOC10 0.88 0.358 0.597 3e-62
297736579 527 unnamed protein product [Vitis vinifera] 0.8 0.379 0.609 1e-61
297735640226 unnamed protein product [Vitis vinifera] 0.728 0.805 0.608 2e-61
10178132248 unnamed protein product [Arabidopsis tha 0.896 0.903 0.569 3e-55
18414919246 sequence-specific DNA binding transcript 0.896 0.910 0.569 3e-55
30680994249 sequence-specific DNA binding transcript 0.9 0.903 0.567 4e-55
224112457286 predicted protein [Populus trichocarpa] 0.888 0.776 0.576 2e-54
>gi|255574826|ref|XP_002528320.1| transcription factor, putative [Ricinus communis] gi|223532275|gb|EEF34078.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 166/238 (69%), Positives = 193/238 (81%), Gaps = 9/238 (3%)

Query: 13  HAATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKK 72
           H +  GGGREDCWSEGAT TLIEAWGDRYV LNRG+LRQKDWKEVA++VNSR+NGVKPKK
Sbjct: 11  HHSRAGGGREDCWSEGATETLIEAWGDRYVNLNRGNLRQKDWKEVADAVNSRQNGVKPKK 70

Query: 73  TDIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLIG-NDAVSSKKPANITLRVKSKP 131
           TDIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSL+G N+  + +KP  +TL VK KP
Sbjct: 71  TDIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLVGVNNHPTKRKPNAVTLTVKRKP 130

Query: 132 RTSFVGRSVSTENDNLSSDGEADDDGDDDEIVVKKVHRMEDVDLSDGAACRELARAILKF 191
                  +V +  +  S   E +D G  DE V+KK HRMEDVD SDGAACRELARAILKF
Sbjct: 131 -------AVYSSTETTSFHEEEEDVG-FDERVIKKEHRMEDVDCSDGAACRELARAILKF 182

Query: 192 GEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKRKQRPASSAT 249
           GEIYERIES+KQ+QM ELEK+R+EF K+VE ER+N+FM AQLE++K   K+   +S+T
Sbjct: 183 GEIYERIESSKQQQMFELEKQRMEFTKEVEFERLNLFMDAQLELEKQALKRAKYASST 240

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224098720|ref|XP_002311242.1| predicted protein [Populus trichocarpa] gi|222851062|gb|EEE88609.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225439493|ref|XP_002270392.1| PREDICTED: uncharacterized protein LOC100253914 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359486490|ref|XP_002272959.2| PREDICTED: uncharacterized protein LOC100251820 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736579|emb|CBI25450.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297735640|emb|CBI18134.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|10178132|dbj|BAB11544.1| unnamed protein product [Arabidopsis thaliana] gi|227202542|dbj|BAH56744.1| AT5G05550 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18414919|ref|NP_568158.1| sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gi|15010668|gb|AAK73993.1| AT5g05550/MOP10_9 [Arabidopsis thaliana] gi|16974319|gb|AAL31144.1| AT5g05550/MOP10_9 [Arabidopsis thaliana] gi|332003504|gb|AED90887.1| sequence-specific DNA binding transcription factor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30680994|ref|NP_850774.1| sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gi|332003505|gb|AED90888.1| sequence-specific DNA binding transcription factor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224112457|ref|XP_002316198.1| predicted protein [Populus trichocarpa] gi|222865238|gb|EEF02369.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
TAIR|locus:2169722249 AT5G05550 [Arabidopsis thalian 0.888 0.891 0.5 7.2e-52
TAIR|locus:2074658249 AT3G11100 [Arabidopsis thalian 0.892 0.895 0.482 2.3e-48
TAIR|locus:2087472 443 ASIL2 "Arabidopsis 6B-interact 0.376 0.212 0.551 5.2e-39
TAIR|locus:2076401321 AT3G58630 [Arabidopsis thalian 0.4 0.311 0.456 2.7e-36
TAIR|locus:2014445383 ASIL1 "6B-interacting protein 0.392 0.255 0.485 3.6e-33
TAIR|locus:2091757333 AT3G24490 [Arabidopsis thalian 0.844 0.633 0.300 3e-21
TAIR|locus:2096134296 AT3G54390 [Arabidopsis thalian 0.36 0.304 0.411 6.6e-21
TAIR|locus:2100108 542 AT3G10030 [Arabidopsis thalian 0.356 0.164 0.371 3.2e-12
TAIR|locus:2042401372 AT2G44730 [Arabidopsis thalian 0.244 0.163 0.426 1.6e-09
TAIR|locus:2087288310 AT3G24860 [Arabidopsis thalian 0.372 0.3 0.295 1.2e-08
TAIR|locus:2169722 AT5G05550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 114/228 (50%), Positives = 145/228 (63%)

Query:    21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNR 80
             RED WSE AT TL+EAWG+RYV+LN G+LRQ DWK+VA++VNSR      KKTD+QCKNR
Sbjct:    20 REDWWSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADAVNSRHGDNSRKKTDLQCKNR 79

Query:    81 IDTLXXXXXXXXXXXXXSKWPFYYRLDSLIGNDAVSSKKPANITLRVKSKPRTSFVGRSV 140
             +DTL             S W FY RLD LIG   V  K    +   VKS P  + +  + 
Sbjct:    80 VDTLKKKYKTEKAKLSPSTWRFYNRLDVLIG--PVVKKSAGGV---VKSAPFKNHLNPTG 134

Query:   141 STEN-DNLSSXXXXXXXXXXXXIVVKKVHRMEDVDLSDGAACRELARAILKFGEIYERIE 199
             S     +L               V +K  R+E+VDLS+G+ CRELA AILKFGE+YERIE
Sbjct:   135 SNSTGSSLEDDDEDDDEVGDWEFVARKHPRVEEVDLSEGSTCRELATAILKFGEVYERIE 194

Query:   200 SAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKRKQRPASS 247
               KQ+ M+ELEK+R+E  K+VE +RMNM M  QLEI+KSK ++R ++S
Sbjct:   195 GKKQQMMIELEKQRMEVTKEVELKRMNMLMEMQLEIEKSKHRKRASAS 242
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2074658 AT3G11100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087472 ASIL2 "Arabidopsis 6B-interacting protein 1-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076401 AT3G58630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014445 ASIL1 "6B-interacting protein 1-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091757 AT3G24490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096134 AT3G54390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100108 AT3G10030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042401 AT2G44730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087288 AT3G24860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00080656
hypothetical protein (251 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
pfam1383784 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-bindi 1e-16
pfam1277696 pfam12776, Myb_DNA-bind_3, Myb/SANT-like DNA-bindi 2e-05
pfam1054584 pfam10545, MADF_DNA_bdg, Alcohol dehydrogenase tra 7e-04
>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain Back     alignment and domain information 
 Score = 72.3 bits (178), Expect = 1e-16
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 22  EDCWSEGATGTLIEAWGDRYV-RLNRGHLRQKD-WKEVAESVNSRENGVKPKKTDIQCKN 79
            + W++  T  LIE WG+R      RG  R K  W+E+AE +  R       ++  QCK 
Sbjct: 1   RNKWTDEETRALIEIWGERLDSLFQRGTKRNKHVWEEIAEKMAER----GYNRSAEQCKE 56

Query: 80  RIDTLKKKYKIEK--AKPPPSKWPFYYR 105
           +   LKKKYK EK   K   S WPF+  
Sbjct: 57  KWKNLKKKYKKEKESNKGSGSSWPFFEE 84

This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins. Length = 84
>gnl|CDD|221767 pfam12776, Myb_DNA-bind_3, Myb/SANT-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|220803 pfam10545, MADF_DNA_bdg, Alcohol dehydrogenase transcription factor Myb/SANT-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 250
KOG4282345 consensus Transcription factor GT-2 and related pr 100.0
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 99.82
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 98.6
smart0059589 MADF subfamily of SANT domain. 98.52
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 98.22
PF1054585 MADF_DNA_bdg: Alcohol dehydrogenase transcription 98.06
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 97.85
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 97.33
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 97.32
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 97.15
PLN03212249 Transcription repressor MYB5; Provisional 95.48
PLN03091 459 hypothetical protein; Provisional 95.46
PF0450498 DUF573: Protein of unknown function, DUF573; Inter 95.1
PLN03212249 Transcription repressor MYB5; Provisional 94.0
PLN03091 459 hypothetical protein; Provisional 90.67
KOG1279506 consensus Chromatin remodeling factor subunit and 90.09
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 89.62
PRK13923170 putative spore coat protein regulator protein YlbO 83.59
KOG0051607 consensus RNA polymerase I termination factor, Myb 81.43
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 80.98
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-31  Score=249.21  Aligned_cols=216  Identities=33%  Similarity=0.442  Sum_probs=150.2

Q ss_pred             CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC----CC
Q 025651           22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP----PP   97 (250)
Q Consensus        22 ~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK~~~----~~   97 (250)
                      .++|+.+||++||++|+++|..|++++++.++|++||.++...    +++||+.||++||++|+++||++|.+.    ..
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~----g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~~~~  129 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAEL----GYPRSPKQCKAKIENLKKKYKKEKAKKEGSGEG  129 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence            7999999999999999999999999999999999999988764    488999999999999999999999986    47


Q ss_pred             CCCcchHHHHHhhC-CCCCC---------CCCCCcccccc----cCCCCCC-----------CC-CCC--------CCCC
Q 025651           98 SKWPFYYRLDSLIG-NDAVS---------SKKPANITLRV----KSKPRTS-----------FV-GRS--------VSTE  143 (250)
Q Consensus        98 s~W~fFd~LD~Llg-~~~~~---------~~~p~~~~~~~----~~~p~~~-----------~~-~~~--------~~~~  143 (250)
                      +.|+||+.||.++. ..++.         ...|.++....    ..+|...           .+ .++        ....
T Consensus       130 s~~~ff~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  209 (345)
T KOG4282|consen  130 SSWKFFSELEALLITFKARPRSDEVGPGNASAPLTLSVSSEPQFSSNPTELQFDGSSLEDSSQPSGLNEDNSNSSSPEPV  209 (345)
T ss_pred             ccchHHHHHHHHHhccCCCCCCCCCCcccccCccccCCCCCCCCCCCccccccCCCcCCCCCcccccCccccccCCCCCC
Confidence            89999999999997 22211         01111110000    0000000           00 000        0000


Q ss_pred             CCC------CCCCCCCCCCCCCh-hhhhhhhcccccccCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 025651          144 NDN------LSSDGEADDDGDDD-EIVVKKVHRMEDVDLSDGAACRELARAILKFGEIYERIE-SAKQKQMMELEKERLE  215 (250)
Q Consensus       144 ~~~------~~sd~~~~~~~~~~-~~~~~k~~r~~~~~~~~g~~~~~la~ai~~f~e~yer~E-~~K~~~~~elEk~Rme  215 (250)
                      .+.      .+++.++..+...+ .....++.+........+..++++++++.+|+++|+++| ..++++|.++|++||+
T Consensus       210 ~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~e~~r~~  289 (345)
T KOG4282|consen  210 AGSLSNDTSSSSSPDDSADSEGGKSSSRKRRVRKDGSKEGIEELMREVARSQERLDEVLERVEEKKEQERMSEEEKWRME  289 (345)
T ss_pred             CcchhhccccccchhcccccccCCCCCCCccccccccchhHHHHhhhhhhhHHHHHHHHHHHhccchHhhhhHHHHHHHH
Confidence            000      01111111111110 011111111111122345689999999999999999999 9999999999999999


Q ss_pred             hh---HHHHHHHHHHHHHHHHHHHHhhhc
Q 025651          216 FI---KDVECERMNMFMGAQLEIQKSKRK  241 (250)
Q Consensus       216 f~---kdlE~~R~~~~~~~Q~ei~~~~~~  241 (250)
                      |+   +++|++++++++++|++|+.|+..
T Consensus       290 ~~~r~ke~e~~~~~~~~~~~~~i~~i~~~  318 (345)
T KOG4282|consen  290 EIERNKELELARQERIQETQLEIRSIKAI  318 (345)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99   999999999999999999988754

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>smart00595 MADF subfamily of SANT domain Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Length = 86 Back     alignment and structure
 Score = 55.6 bits (134), Expect = 1e-10
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 21  REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNR 80
           R + W +  T +LI          N     +  W++++  +  RE G    ++   C ++
Sbjct: 3   RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKM--REKGF--DRSPDMCTDK 58

Query: 81  IDTLKKKYKIEK---AKPPPSKWPFY 103
              L K++K  K        +K  +Y
Sbjct: 59  WRNLLKEFKKAKHHDRGNGSAKMSYY 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 99.84
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 97.99
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 97.9
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 97.81
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 97.77
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 97.69
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 97.67
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 97.65
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 97.64
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 97.59
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 97.57
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 97.43
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 97.41
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 97.4
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 97.37
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 97.35
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 97.35
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 97.34
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 96.36
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 97.14
2cjj_A93 Radialis; plant development, DNA-binding protein, 97.09
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 97.08
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 96.98
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 96.91
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 96.84
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 96.73
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 96.68
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 96.63
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 96.37
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.35
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 96.31
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 96.25
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 96.11
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 96.1
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 95.84
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 95.81
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 95.58
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 95.54
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 95.35
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 94.52
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 93.51
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 91.6
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 90.16
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 87.54
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 84.83
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 81.48
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
Probab=99.84  E-value=3.5e-21  Score=146.08  Aligned_cols=82  Identities=17%  Similarity=0.336  Sum_probs=73.5

Q ss_pred             CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC---C
Q 025651           20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP---P   96 (250)
Q Consensus        20 ~r~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKKrYKkeK~~~---~   96 (250)
                      .|...||++||.+||++|++...++..+..+...|++||+.|.+++    |.+|+.||++||++|++.||++|+++   +
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G----~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG   77 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKG----FDRSPDMCTDKWRNLLKEFKKAKHHDRGNG   77 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHCSCSSCCCCCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            3678999999999999999999999888877788999999999864    67999999999999999999999975   3


Q ss_pred             CCCCcchHH
Q 025651           97 PSKWPFYYR  105 (250)
Q Consensus        97 ~s~W~fFd~  105 (250)
                      +.+|+||+.
T Consensus        78 ~~~~~yf~e   86 (86)
T 2ebi_A           78 SAKMSYYKE   86 (86)
T ss_dssp             CCCCCCCCC
T ss_pred             CCCCCCCCc
Confidence            569999973
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 97.87
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 97.86
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 97.68
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.63
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 97.52
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 97.51
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.5
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.4
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 97.29
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.24
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.22
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 97.02
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 96.88
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 96.19
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 94.35
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 86.92
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.1e-05  Score=54.26  Aligned_cols=50  Identities=20%  Similarity=0.341  Sum_probs=39.0

Q ss_pred             CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCCHHHHHHHHHHHHH
Q 025651           22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK   86 (250)
Q Consensus        22 ~~~WSe~ET~~LLeawger~~ql~rg~lR~k~W~eVA~~v~~r~~g~k~~rT~~QCrnKid~LKK   86 (250)
                      ...||.+|...|++.....      |.   ..|..||..+--      ..||+.||++|+.+|+|
T Consensus         2 r~~WT~eED~~L~~~v~~~------G~---~~W~~I~~~~~~------~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKY------GE---GNWSKILLHYKF------NNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHH------CT---TCHHHHHHHSCC------SSCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHH------CC---CCHHHHHhhcCC------CCCCHHHHHHHHHHHHC
Confidence            3579999999999987754      21   269999876421      24999999999999986
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure