Citrus Sinensis ID: 025657

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
MTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE
cccccccccHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccEEccccccccEEEcHHHHHHccccHHHHHHHHHHHHccccEEEcccccccHHHHHcccccccEEEEcccccHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHcccccEEEEccccHHHHHHHHccc
cccccccccHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHccccHEEEccccccccEEEccccccccEEEccHHHcccccccHHHHHHHHHHHccccEEEEEEccccHHHHHHHccccEEEEEEEEccHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHccccccccccHHHHHHccccccccccccHHHHHHHHHccccccHHHHHHHHHHccccEEEEEEccHHHHHHHHHcc
MTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFsrilfrprilrdvskidmtttvlgfnismpimiaptafqkmahpegecATARAASAAGTIMTLSswatssveevsstgpgirFFQLYVTKHRNVDAQLVKRAERAGFKAIALtvdtprlgrreadiknrfvlpphltlknyeglyigkmdktddsgLASYVANQIdrslnwkdvkwlqtitslpilvkgvltaedgskllske
MTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSrilfrprilrdvskiDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRaeragfkaialtvdtprlgrreadiknrfvlpphltlknYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTitslpilvkgvltaedgskllske
MTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECataraasaaGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE
***ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA**********
*TYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY******************YVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSK*
MTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSW**********TGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE
****SEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLS**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query249 2.2.26 [Sep-21-2011]
O49506 368 Peroxisomal (S)-2-hydroxy no no 0.947 0.641 0.864 1e-118
P05414 369 Peroxisomal (S)-2-hydroxy N/A no 0.947 0.639 0.881 1e-115
Q9LRR9 367 Peroxisomal (S)-2-hydroxy no no 0.947 0.643 0.864 1e-114
Q10CE4 369 Peroxisomal (S)-2-hydroxy yes no 0.955 0.644 0.848 1e-113
B8AKX6 369 Peroxisomal (S)-2-hydroxy N/A no 0.955 0.644 0.848 1e-113
Q6YT73 369 Peroxisomal (S)-2-hydroxy no no 0.955 0.644 0.848 1e-113
B8B7C5 369 Peroxisomal (S)-2-hydroxy N/A no 0.955 0.644 0.848 1e-113
Q9LRS0 367 Peroxisomal (S)-2-hydroxy no no 0.947 0.643 0.843 1e-112
Q7FAS1 367 Peroxisomal (S)-2-hydroxy no no 0.943 0.640 0.842 1e-110
B8AUI3 367 Peroxisomal (S)-2-hydroxy N/A no 0.943 0.640 0.842 1e-110
>sp|O49506|GLO5_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1 Back     alignment and function desciption
 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/236 (86%), Positives = 220/236 (93%)

Query: 6   EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMT 65
           EITNVMEYE +AKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRIL DVSKID++
Sbjct: 2   EITNVMEYEKIAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDVS 61

Query: 66  TTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP 125
           TTVLGFNISMPIMIAPTA QKMAHP+GE ATARA SAAGTIMTLSSWAT SVEEV+STGP
Sbjct: 62  TTVLGFNISMPIMIAPTAMQKMAHPDGELATARATSAAGTIMTLSSWATCSVEEVASTGP 121

Query: 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
           GIRFFQLYV K RNV  QLVKRAE AGFKAIALTVDTPRLGRRE+DIKNRF LP  LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVIQLVKRAEEAGFKAIALTVDTPRLGRRESDIKNRFALPRGLTLK 181

Query: 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAED 241
           N+EGL +GK+DKT+DSGLASYVA Q+D+SL+WKD+KWLQ+ITSLPILVKGV+TAED
Sbjct: 182 NFEGLDLGKIDKTNDSGLASYVAGQVDQSLSWKDIKWLQSITSLPILVKGVITAED 237

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5
>sp|P05414|GOX_SPIOL Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1 Back     alignment and function description
>sp|Q9LRR9|GLO1_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Arabidopsis thaliana GN=GLO1 PE=1 SV=1 Back     alignment and function description
>sp|Q10CE4|GLO1_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. japonica GN=GLO1 PE=1 SV=1 Back     alignment and function description
>sp|B8AKX6|GLO1_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. indica GN=GLO1 PE=3 SV=1 Back     alignment and function description
>sp|Q6YT73|GLO5_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. japonica GN=GLO5 PE=2 SV=1 Back     alignment and function description
>sp|B8B7C5|GLO5_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. indica GN=GLO5 PE=3 SV=1 Back     alignment and function description
>sp|Q9LRS0|GLO2_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO2 OS=Arabidopsis thaliana GN=GLO2 PE=1 SV=1 Back     alignment and function description
>sp|Q7FAS1|GLO3_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. japonica GN=GLO3 PE=2 SV=1 Back     alignment and function description
>sp|B8AUI3|GLO3_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. indica GN=GLO3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
147789493 371 hypothetical protein VITISV_005886 [Viti 0.947 0.636 0.877 1e-117
145333373314 (S)-2-hydroxy-acid oxidase [Arabidopsis 0.947 0.751 0.864 1e-117
15236857 368 (S)-2-hydroxy-acid oxidase [Arabidopsis 0.947 0.641 0.864 1e-117
366984550 367 glycolate oxidase [Gossypium hirsutum] 0.947 0.643 0.906 1e-116
168033163 368 predicted protein [Physcomitrella patens 0.955 0.646 0.836 1e-116
297800234 368 hypothetical protein ARALYDRAFT_914854 [ 0.947 0.641 0.860 1e-116
189418957 369 glycolate oxidase [Mikania micrantha] 0.943 0.636 0.855 1e-116
168002982 368 predicted protein [Physcomitrella patens 0.951 0.644 0.831 1e-115
228403 371 glycolate oxidase 0.947 0.636 0.898 1e-115
302754346 371 hypothetical protein SELMODRAFT_266585 [ 0.967 0.649 0.821 1e-115
>gi|147789493|emb|CAN67413.1| hypothetical protein VITISV_005886 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/236 (87%), Positives = 221/236 (93%)

Query: 6   EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMT 65
           EITNV EYEA+AK+KLPKMV+DYYASGAEDQWTL +NR+AFS+ILFRPRIL DVSKIDMT
Sbjct: 2   EITNVTEYEAIAKQKLPKMVFDYYASGAEDQWTLYQNRHAFSQILFRPRILIDVSKIDMT 61

Query: 66  TTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP 125
           TTVLGF ISMPIMIAPTA QKMAHPEGE ATARAASA GTIMTLSSWATSSVEEV+STGP
Sbjct: 62  TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASATGTIMTLSSWATSSVEEVASTGP 121

Query: 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
           GIRFFQLYV K R+V AQLV+RAERAGFKAIALTVDTPRLGRREADIKNRF LPP LTLK
Sbjct: 122 GIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181

Query: 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAED 241
           N+EGL +GKMDK DDSGLASYVA QIDR+L+WKDVKWLQTIT+LPILVKGVLTAED
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITNLPILVKGVLTAED 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|145333373|ref|NP_001078406.1| (S)-2-hydroxy-acid oxidase [Arabidopsis thaliana] gi|332658632|gb|AEE84032.1| (S)-2-hydroxy-acid oxidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15236857|ref|NP_193570.1| (S)-2-hydroxy-acid oxidase [Arabidopsis thaliana] gi|75318383|sp|O49506.1|GLO5_ARATH RecName: Full=Peroxisomal (S)-2-hydroxy-acid oxidase GLO5; AltName: Full=Glycolate oxidase 3; Short=AtGLO5; Short=GOX 3; AltName: Full=Short chain alpha-hydroxy acid oxidase GLO5 gi|2832641|emb|CAA16716.1| glycolate oxidase - like protein [Arabidopsis thaliana] gi|7268629|emb|CAB78838.1| glycolate oxidase-like protein [Arabidopsis thaliana] gi|25054935|gb|AAN71944.1| putative glycolate oxidase [Arabidopsis thaliana] gi|332658631|gb|AEE84031.1| (S)-2-hydroxy-acid oxidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|366984550|gb|AEX09184.1| glycolate oxidase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|168033163|ref|XP_001769086.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679720|gb|EDQ66164.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information
>gi|297800234|ref|XP_002868001.1| hypothetical protein ARALYDRAFT_914854 [Arabidopsis lyrata subsp. lyrata] gi|297313837|gb|EFH44260.1| hypothetical protein ARALYDRAFT_914854 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|189418957|gb|ACD93720.1| glycolate oxidase [Mikania micrantha] Back     alignment and taxonomy information
>gi|168002982|ref|XP_001754192.1| predicted protein [Physcomitrella patens subsp. patens] gi|162694746|gb|EDQ81093.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information
>gi|228403|prf||1803516A glycolate oxidase Back     alignment and taxonomy information
>gi|302754346|ref|XP_002960597.1| hypothetical protein SELMODRAFT_266585 [Selaginella moellendorffii] gi|302771644|ref|XP_002969240.1| hypothetical protein SELMODRAFT_270767 [Selaginella moellendorffii] gi|300162716|gb|EFJ29328.1| hypothetical protein SELMODRAFT_270767 [Selaginella moellendorffii] gi|300171536|gb|EFJ38136.1| hypothetical protein SELMODRAFT_266585 [Selaginella moellendorffii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
TAIR|locus:2091642 367 GOX1 "glycolate oxidase 1" [Ar 0.947 0.643 0.826 6.9e-102
TAIR|locus:2124499 368 GOX3 "glycolate oxidase 3" [Ar 0.947 0.641 0.830 1.4e-101
UNIPROTKB|B8AKX6 369 GLO1 "Peroxisomal (S)-2-hydrox 0.955 0.644 0.810 6.2e-101
UNIPROTKB|Q10CE4 369 GLO1 "Peroxisomal (S)-2-hydrox 0.955 0.644 0.810 6.2e-101
UNIPROTKB|B8B7C5 369 GLO5 "Peroxisomal (S)-2-hydrox 0.955 0.644 0.810 1.7e-100
UNIPROTKB|Q6YT73 369 GLO5 "Peroxisomal (S)-2-hydrox 0.955 0.644 0.810 1.7e-100
UNIPROTKB|B8AUI3 367 GLO3 "Peroxisomal (S)-2-hydrox 0.943 0.640 0.804 4.5e-98
UNIPROTKB|Q7FAS1 367 GLO3 "Peroxisomal (S)-2-hydrox 0.943 0.640 0.804 4.5e-98
UNIPROTKB|Q01KC2 368 GLO2 "Peroxisomal (S)-2-hydrox 0.943 0.638 0.663 1e-82
UNIPROTKB|Q7XPR4 368 GLO2 "Peroxisomal (S)-2-hydrox 0.943 0.638 0.663 1e-82
TAIR|locus:2091642 GOX1 "glycolate oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
 Identities = 195/236 (82%), Positives = 213/236 (90%)

Query:     6 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMT 65
             EITNV EY+A+AK+KLPKMVYDYYASGAEDQWTLQENRNAF+RILFRPRIL DVSKIDMT
Sbjct:     2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61

Query:    66 TTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP 125
             TTVLGF ISMPIM+APTA QKMAHP+GE          GTIMTLSSWATSSVEEV+STGP
Sbjct:    62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121

Query:   126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
             GIRFFQLYV K+RNV  QLV+RAERAGFKAIALTVDTPRLGRRE+DIKNRF LPP+LTLK
Sbjct:   122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181

Query:   186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAED 241
             N+EGL +GKMD+ +DSGLASYVA QIDR+L+WKDV+WLQTIT LPILVKGVLT ED
Sbjct:   182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGED 237
GO:0003824 "catalytic activity" evidence=IEA
GO:0008891 "glycolate oxidase activity" evidence=ISS;IMP
GO:0010181 "FMN binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0005634 "nucleus" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005777 "peroxisome" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=IMP
TAIR|locus:2124499 GOX3 "glycolate oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B8AKX6 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q10CE4 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|B8B7C5 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q6YT73 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|B8AUI3 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q7FAS1 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q01KC2 GLO2 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO2" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XPR4 GLO2 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B8AUI3GLO3_ORYSI1, ., 1, ., 3, ., 1, 50.84250.94370.6403N/Ano
B8B7C5GLO5_ORYSI1, ., 1, ., 3, ., 1, 50.84870.95580.6449N/Ano
Q10CE4GLO1_ORYSJ1, ., 1, ., 3, ., 1, 50.84870.95580.6449yesno
B8AKX6GLO1_ORYSI1, ., 1, ., 3, ., 1, 50.84870.95580.6449N/Ano
Q9UJM8HAOX1_HUMAN1, ., 1, ., 3, ., 1, 50.51230.95580.6432yesno
P05414GOX_SPIOL1, ., 1, ., 3, ., 1, 50.88130.94770.6395N/Ano
Q9WU19HAOX1_MOUSE1, ., 1, ., 3, ., 1, 50.51420.96780.6513yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.30.963
3rd Layer1.1.3.150.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
PLN02493 367 PLN02493, PLN02493, probable peroxisomal (S)-2-hyd 1e-144
PLN02979 366 PLN02979, PLN02979, glycolate oxidase 1e-117
PLN02535 364 PLN02535, PLN02535, glycolate oxidase 1e-117
cd02809 299 cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom 2e-95
pfam01070 302 pfam01070, FMN_dh, FMN-dependent dehydrogenase 4e-94
cd02922 344 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-b 2e-86
COG1304 360 COG1304, idi, Isopentenyl diphosphate isomerase (B 2e-71
cd04737 351 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN 6e-67
cd04736 361 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li 1e-61
cd03332 383 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) 2e-60
TIGR02708 367 TIGR02708, L_lactate_ox, L-lactate oxidase 3e-46
TIGR03966 385 TIGR03966, actino_HemFlav, heme/flavin dehydrogena 4e-40
PRK11197 381 PRK11197, lldD, L-lactate dehydrogenase; Provision 1e-38
>gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid oxidase Back     alignment and domain information 
 Score =  408 bits (1050), Expect = e-144
 Identities = 204/237 (86%), Positives = 222/237 (93%)

Query: 6   EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMT 65
           EITNV EY+A+AK+KLPKMVYDYYASGAEDQWTLQENRNAF+RILFRPRIL DVSKIDMT
Sbjct: 2   EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61

Query: 66  TTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP 125
           TTVLGF ISMPIM+APTA QKMAHP+GE ATARAASAAGTIMTLSSWATSSVEEV+STGP
Sbjct: 62  TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121

Query: 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
           GIRFFQLYV K+RNV  QLV+RAERAGFKAIALTVDTPRLGRRE+DIKNRF LPP+LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181

Query: 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDG 242
           N+EGL +GKMD+ +DSGLASYVA QIDR+L+WKDV+WLQTIT LPILVKGVLT ED 
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDA 238

Length = 367
>gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase Back     alignment and domain information
>gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase Back     alignment and domain information
>gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes Back     alignment and domain information
>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase Back     alignment and domain information
>gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain Back     alignment and domain information
>gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] Back     alignment and domain information
>gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain Back     alignment and domain information
>gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain Back     alignment and domain information
>gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain Back     alignment and domain information
>gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase Back     alignment and domain information
>gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system Back     alignment and domain information
>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 249
KOG0538 363 consensus Glycolate oxidase [Energy production and 100.0
PLN02493 367 probable peroxisomal (S)-2-hydroxy-acid oxidase 100.0
PLN02535 364 glycolate oxidase 100.0
PRK11197 381 lldD L-lactate dehydrogenase; Provisional 100.0
cd04736 361 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin 100.0
cd03332 383 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin 100.0
TIGR02708 367 L_lactate_ox L-lactate oxidase. Members of this pr 100.0
cd04737 351 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d 100.0
cd02922 344 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom 100.0
PF01070 356 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR 100.0
PLN02979 366 glycolate oxidase 100.0
COG1304 360 idi Isopentenyl diphosphate isomerase (BS_ypgA, MT 100.0
cd02809 299 alpha_hydroxyacid_oxid_FMN Family of homologous FM 100.0
cd02811 326 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di 99.71
PRK05437 352 isopentenyl pyrophosphate isomerase; Provisional 99.67
TIGR02151 333 IPP_isom_2 isopentenyl-diphosphate delta-isomerase 99.6
TIGR01306 321 GMP_reduct_2 guanosine monophosphate reductase, ba 99.39
PRK05458 326 guanosine 5'-monophosphate oxidoreductase; Provisi 99.21
PRK08649 368 inosine 5-monophosphate dehydrogenase; Validated 98.82
TIGR01305 343 GMP_reduct_1 guanosine monophosphate reductase, eu 98.74
cd00381 325 IMPDH IMPDH: The catalytic domain of the inosine m 98.47
TIGR01304 369 IMP_DH_rel_2 IMP dehydrogenase family protein. Thi 98.41
PRK06843 404 inosine 5-monophosphate dehydrogenase; Validated 98.1
cd04728248 ThiG Thiazole synthase (ThiG) is the tetrameric en 97.46
cd02808 392 GltS_FMN Glutamate synthase (GltS) FMN-binding dom 97.28
PRK07259 301 dihydroorotate dehydrogenase 1B; Reviewed 97.28
cd02940 299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 97.19
TIGR01037 300 pyrD_sub1_fam dihydroorotate dehydrogenase (subfam 97.17
TIGR01302 450 IMP_dehydrog inosine-5'-monophosphate dehydrogenas 97.13
PRK00208250 thiG thiazole synthase; Reviewed 97.08
PTZ00314 495 inosine-5'-monophosphate dehydrogenase; Provisiona 97.07
cd04740 296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 97.0
cd04739 325 DHOD_like Dihydroorotate dehydrogenase (DHOD) like 96.81
PRK05567 486 inosine 5'-monophosphate dehydrogenase; Reviewed 96.78
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 96.64
PRK07565 334 dihydroorotate dehydrogenase 2; Reviewed 96.55
KOG2335 358 consensus tRNA-dihydrouridine synthase [Translatio 96.41
PRK11840326 bifunctional sulfur carrier protein/thiazole synth 96.37
TIGR00737 319 nifR3_yhdG putative TIM-barrel protein, nifR3 fami 96.36
PLN02274 505 inosine-5'-monophosphate dehydrogenase 96.31
PF00478 352 IMPDH: IMP dehydrogenase / GMP reductase domain; I 96.05
PRK06801286 hypothetical protein; Provisional 95.95
PLN02495 385 oxidoreductase, acting on the CH-CH group of donor 95.9
PLN02826 409 dihydroorotate dehydrogenase 95.75
PRK05096 346 guanosine 5'-monophosphate oxidoreductase; Provisi 95.66
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 95.65
PRK10415 321 tRNA-dihydrouridine synthase B; Provisional 95.62
PRK05286344 dihydroorotate dehydrogenase 2; Reviewed 95.59
cd04739325 DHOD_like Dihydroorotate dehydrogenase (DHOD) like 95.36
cd04722200 TIM_phosphate_binding TIM barrel proteins share a 95.35
COG0042 323 tRNA-dihydrouridine synthase [Translation, ribosom 95.24
PRK07998283 gatY putative fructose-1,6-bisphosphate aldolase; 95.0
cd04738 327 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl 95.0
PRK08318 420 dihydropyrimidine dehydrogenase subunit B; Validat 94.92
PRK05286 344 dihydroorotate dehydrogenase 2; Reviewed 94.73
PF05690247 ThiG: Thiazole biosynthesis protein ThiG; InterPro 94.71
TIGR00736231 nifR3_rel_arch TIM-barrel protein, putative. Membe 94.63
PRK07565334 dihydroorotate dehydrogenase 2; Reviewed 94.61
PF01207 309 Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 94.61
cd04738327 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl 94.51
CHL00162267 thiG thiamin biosynthesis protein G; Validated 94.41
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 94.36
cd02940299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 94.33
PRK07259301 dihydroorotate dehydrogenase 1B; Reviewed 94.31
TIGR01858282 tag_bisphos_ald class II aldolase, tagatose bispho 94.28
PRK06806281 fructose-bisphosphate aldolase; Provisional 94.27
PRK01033258 imidazole glycerol phosphate synthase subunit HisF 94.16
PRK08318 420 dihydropyrimidine dehydrogenase subunit B; Validat 94.11
PRK07107 502 inosine 5-monophosphate dehydrogenase; Validated 93.96
PRK12738286 kbaY tagatose-bisphosphate aldolase; Reviewed 93.92
PRK02506 310 dihydroorotate dehydrogenase 1A; Reviewed 93.78
PRK10550312 tRNA-dihydrouridine synthase C; Provisional 93.65
TIGR01037300 pyrD_sub1_fam dihydroorotate dehydrogenase (subfam 93.58
PRK09195284 gatY tagatose-bisphosphate aldolase; Reviewed 93.42
COG2022262 ThiG Uncharacterized enzyme of thiazole biosynthes 93.35
cd04730236 NPD_like 2-Nitropropane dioxygenase (NPD), one of 93.24
PRK12857284 fructose-1,6-bisphosphate aldolase; Reviewed 93.22
cd02801231 DUS_like_FMN Dihydrouridine synthase-like (DUS-lik 93.07
TIGR03151 307 enACPred_II putative enoyl-(acyl-carrier-protein) 92.93
PRK07315293 fructose-bisphosphate aldolase; Provisional 92.63
PRK10550 312 tRNA-dihydrouridine synthase C; Provisional 92.55
TIGR00167288 cbbA ketose-bisphosphate aldolases. fructose-bisph 92.55
PRK13585241 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met 92.36
TIGR00735254 hisF imidazoleglycerol phosphate synthase, cyclase 92.27
TIGR00007230 phosphoribosylformimino-5-aminoimidazole carboxami 92.19
TIGR01036335 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 92.11
cd00947276 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a 92.04
cd04741294 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c 91.84
cd04734343 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN 91.79
PRK07084321 fructose-bisphosphate aldolase; Provisional 91.74
TIGR03151 307 enACPred_II putative enoyl-(acyl-carrier-protein) 91.7
PRK05835 307 fructose-bisphosphate aldolase; Provisional 91.64
PRK12737284 gatY tagatose-bisphosphate aldolase; Reviewed 91.56
PRK07709285 fructose-bisphosphate aldolase; Provisional 91.15
PRK09196347 fructose-1,6-bisphosphate aldolase; Reviewed 91.04
cd04731243 HisF The cyclase subunit of imidazoleglycerol phos 90.9
PRK08610286 fructose-bisphosphate aldolase; Reviewed 90.59
cd02809299 alpha_hydroxyacid_oxid_FMN Family of homologous FM 90.59
TIGR00742 318 yjbN tRNA dihydrouridine synthase A. Members of th 90.53
TIGR03572232 WbuZ glycosyl amidation-associated protein WbuZ. T 90.38
PRK13399347 fructose-1,6-bisphosphate aldolase; Provisional 90.31
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 90.31
cd02911233 arch_FMN Archeal FMN-binding domain. This family o 90.29
PRK00748233 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met 90.18
PF04131192 NanE: Putative N-acetylmannosamine-6-phosphate epi 90.03
TIGR00737 319 nifR3_yhdG putative TIM-barrel protein, nifR3 fami 89.97
PRK08185283 hypothetical protein; Provisional 89.81
PRK13587234 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met 89.41
TIGR01521347 FruBisAldo_II_B fructose-bisphosphate aldolase, cl 89.04
cd00331 217 IGPS Indole-3-glycerol phosphate synthase (IGPS); 88.94
cd04741 294 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c 88.38
TIGR00742 318 yjbN tRNA dihydrouridine synthase A. Members of th 88.1
PRK11815 333 tRNA-dihydrouridine synthase A; Provisional 88.08
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 87.73
cd04732234 HisA HisA. Phosphoribosylformimino-5-aminoimidazol 87.68
TIGR01859282 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, 87.6
cd00452190 KDPG_aldolase KDPG and KHG aldolase. This family b 87.49
PRK00507221 deoxyribose-phosphate aldolase; Provisional 87.42
PRK11815 333 tRNA-dihydrouridine synthase A; Provisional 87.35
PRK13523337 NADPH dehydrogenase NamA; Provisional 87.29
TIGR01182204 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho 86.51
PRK00278 260 trpC indole-3-glycerol-phosphate synthase; Reviewe 85.63
PRK02083253 imidazole glycerol phosphate synthase subunit HisF 85.1
cd04723233 HisA_HisF Phosphoribosylformimino-5-aminoimidazole 84.57
TIGR01036 335 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 84.17
PLN02826409 dihydroorotate dehydrogenase 84.12
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 83.81
COG0167 310 PyrD Dihydroorotate dehydrogenase [Nucleotide tran 83.77
cd02933338 OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind 82.74
PRK14024241 phosphoribosyl isomerase A; Provisional 81.81
PLN02591250 tryptophan synthase 81.47
PRK06552213 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 81.21
cd03316357 MR_like Mandelate racemase (MR)-like subfamily of 81.1
PRK13125244 trpA tryptophan synthase subunit alpha; Provisiona 80.85
>KOG0538 consensus Glycolate oxidase [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=9.1e-83  Score=565.27  Aligned_cols=243  Identities=70%  Similarity=1.080  Sum_probs=234.0

Q ss_pred             CCChHHHHHHHHHhCChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeeccccccc
Q 025657            7 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQK   86 (249)
Q Consensus         7 ~~~i~d~e~~A~~~Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~~   86 (249)
                      ++|++|||+.|+++||+++||||.|||+|++|+++|++||.||.|+||+|+||+.+|+||++||+++++||+|||||+++
T Consensus         1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk   80 (363)
T KOG0538|consen    1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK   80 (363)
T ss_pred             CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCC-CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 025657           87 MAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL  165 (249)
Q Consensus        87 l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~  165 (249)
                      |+|||||.++||||+++|++|++||.|++|+|||++++| +.+|||||+++||+++++|++|||++||+||+||||+|++
T Consensus        81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l  160 (363)
T KOG0538|consen   81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL  160 (363)
T ss_pred             ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence            999999999999999999999999999999999998885 8999999999999999999999999999999999999999


Q ss_pred             CCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHH
Q 025657          166 GRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKL  245 (249)
Q Consensus       166 g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A  245 (249)
                      |+|+.|+||+|.+|+.++++|+.+....+..+.+.++...+...++|++++|+||+|||+.|+|||||||||+.|||++|
T Consensus       161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A  240 (363)
T KOG0538|consen  161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA  240 (363)
T ss_pred             cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence            99999999999999999999998875555555567788889999999999999999999999999999999999999999


Q ss_pred             hhCC
Q 025657          246 LSKE  249 (249)
Q Consensus       246 ~~~~  249 (249)
                      ++||
T Consensus       241 ve~G  244 (363)
T KOG0538|consen  241 VEAG  244 (363)
T ss_pred             HHhC
Confidence            9997

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase Back     alignment and domain information
>PLN02535 glycolate oxidase Back     alignment and domain information
>PRK11197 lldD L-lactate dehydrogenase; Provisional Back     alignment and domain information
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain Back     alignment and domain information
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain Back     alignment and domain information
>TIGR02708 L_lactate_ox L-lactate oxidase Back     alignment and domain information
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain Back     alignment and domain information
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain Back     alignment and domain information
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related Back     alignment and domain information
>PLN02979 glycolate oxidase Back     alignment and domain information
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] Back     alignment and domain information
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes Back     alignment and domain information
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain Back     alignment and domain information
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional Back     alignment and domain information
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 Back     alignment and domain information
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic Back     alignment and domain information
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase Back     alignment and domain information
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein Back     alignment and domain information
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism Back     alignment and domain information
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein Back     alignment and domain information
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>PRK00208 thiG thiazole synthase; Reviewed Back     alignment and domain information
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins Back     alignment and domain information
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional Back     alignment and domain information
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family Back     alignment and domain information
>PLN02274 inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase Back     alignment and domain information
>PRK06801 hypothetical protein; Provisional Back     alignment and domain information
>PLN02495 oxidoreductase, acting on the CH-CH group of donors Back     alignment and domain information
>PLN02826 dihydroorotate dehydrogenase Back     alignment and domain information
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>PRK10415 tRNA-dihydrouridine synthase B; Provisional Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins Back     alignment and domain information
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure Back     alignment and domain information
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed Back     alignment and domain information
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 Back     alignment and domain information
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences Back     alignment and domain information
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative Back     alignment and domain information
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA Back     alignment and domain information
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 Back     alignment and domain information
>CHL00162 thiG thiamin biosynthesis protein G; Validated Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family Back     alignment and domain information
>PRK06806 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional Back     alignment and domain information
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated Back     alignment and domain information
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed Back     alignment and domain information
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed Back     alignment and domain information
>PRK10550 tRNA-dihydrouridine synthase C; Provisional Back     alignment and domain information
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein Back     alignment and domain information
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed Back     alignment and domain information
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] Back     alignment and domain information
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites Back     alignment and domain information
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed Back     alignment and domain information
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain Back     alignment and domain information
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II Back     alignment and domain information
>PRK07315 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>PRK10550 tRNA-dihydrouridine synthase C; Provisional Back     alignment and domain information
>TIGR00167 cbbA ketose-bisphosphate aldolases Back     alignment and domain information
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional Back     alignment and domain information
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit Back     alignment and domain information
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Back     alignment and domain information
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 Back     alignment and domain information
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases Back     alignment and domain information
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain Back     alignment and domain information
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 Back     alignment and domain information
>PRK07084 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II Back     alignment and domain information
>PRK05835 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed Back     alignment and domain information
>PRK07709 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed Back     alignment and domain information
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) Back     alignment and domain information
>PRK08610 fructose-bisphosphate aldolase; Reviewed Back     alignment and domain information
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes Back     alignment and domain information
>TIGR00742 yjbN tRNA dihydrouridine synthase A Back     alignment and domain information
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ Back     alignment and domain information
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>cd02911 arch_FMN Archeal FMN-binding domain Back     alignment and domain information
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated Back     alignment and domain information
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [] Back     alignment and domain information
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family Back     alignment and domain information
>PRK08185 hypothetical protein; Provisional Back     alignment and domain information
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional Back     alignment and domain information
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype Back     alignment and domain information
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water Back     alignment and domain information
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain Back     alignment and domain information
>TIGR00742 yjbN tRNA dihydrouridine synthase A Back     alignment and domain information
>PRK11815 tRNA-dihydrouridine synthase A; Provisional Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>cd04732 HisA HisA Back     alignment and domain information
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist Back     alignment and domain information
>cd00452 KDPG_aldolase KDPG and KHG aldolase Back     alignment and domain information
>PRK00507 deoxyribose-phosphate aldolase; Provisional Back     alignment and domain information
>PRK11815 tRNA-dihydrouridine synthase A; Provisional Back     alignment and domain information
>PRK13523 NADPH dehydrogenase NamA; Provisional Back     alignment and domain information
>TIGR01182 eda Entner-Doudoroff aldolase Back     alignment and domain information
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed Back     alignment and domain information
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional Back     alignment and domain information
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) Back     alignment and domain information
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 Back     alignment and domain information
>PLN02826 dihydroorotate dehydrogenase Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain Back     alignment and domain information
>PRK14024 phosphoribosyl isomerase A; Provisional Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily Back     alignment and domain information
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
1gox_A 370 Refined Structure Of Spinach Glycolate Oxidase At 2 1e-116
1al7_A 359 Three-Dimensional Structures Of Glycolate Oxidase W 1e-116
1gyl_A 369 Involvement Of Tyr24 And Trp108 In Substrate Bindin 1e-115
2rdt_A 387 Crystal Structure Of Human Glycolate Oxidase (Go) I 9e-65
2nzl_A 392 Crystal Structure Of Human Hydroxyacid Oxidase 1 Le 1e-64
2w0u_A 370 Crystal Structure Of Human Glycolate Oxidase In Com 2e-64
2a7n_A 380 Crystal Structure Of The G81a Mutant Of The Active 2e-48
1huv_A 380 Crystal Structure Of A Soluble Mutant Of The Membra 5e-48
1tb3_A 352 Crystal Structure Analysis Of Recombinant Rat Kidne 3e-42
3sgz_A 352 High Resolution Crystal Structure Of Rat Long Chain 1e-39
2cdh_0226 Architecture Of The Thermomyces Lanuginosus Fungal 6e-39
2cdh_0226 Architecture Of The Thermomyces Lanuginosus Fungal 1e-07
1kbj_A 412 Crystallographic Study Of The Recombinant Flavin-Bi 3e-38
2oz0_A 511 Mechanistic And Structural Studies Of H373q Flavocy 5e-38
1qcw_A 410 Flavocytochrome B2, Arg289lys Mutant Length = 410 5e-38
1ltd_A 506 The 2.6 Angstroms Refined Structure Of The Escheric 5e-38
1fcb_A 511 Molecular Structure Of Flavocytochrome B2 At 2.4 An 5e-38
1sze_A 511 L230a Mutant Flavocytochrome B2 With Benzoylformate 6e-38
1ldc_A 511 X-Ray Structure Of Two Complexes Of The Y143f Flavo 1e-37
1szf_A 511 A198g:l230a Mutant Flavocytochrome B2 With Pyruvate 2e-37
2j6x_A 374 The Crystal Structure Of Lactate Oxidase Length = 3 7e-27
2du2_A 374 Crystal Structure Analysis Of The L-Lactate Oxidase 8e-27
2nli_A 368 Crystal Structure Of The Complex Between L-Lactate 9e-27
>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2 Angstroms Resolution Length = 370 Back     alignment and structure 
Iteration: 1

 Score =  413 bits (1061), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/236 (84%), Positives = 212/236 (89%)
Query: 6   EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMT 65
           EITNV EYEA+AK+KLPKMVYDYYASGAEDQWTL ENRNAFSRILFRPRIL DV+ IDMT
Sbjct: 3   EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62
Query: 66  TTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP 125
           TT+LGF ISMPIMIAPTA QKMAHPEGE          GTIMTLSSWATSSVEEV+STGP
Sbjct: 63  TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122
Query: 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
           GIRFFQLYV K RNV AQLV+RAERAGFKAIALTVDTPRLGRREADIKNRFVLPP LTLK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182
Query: 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAED 241
           N+EG+ +GKMDK +DSGL+SYVA QIDRSL+WKDV WLQTITSLPILVKGV+TAED
Sbjct: 183 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAED 238
>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With Bound Active- Site Inhibitors Length = 359 Back     alignment and structure
>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And Substrate Specificity Of Glycolate Oxidase Length = 369 Back     alignment and structure
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In Complex With Cdst Length = 387 Back     alignment and structure
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1 Length = 392 Back     alignment and structure
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]- 1,2,3-Thiadiazole-4-Carboxylate. Length = 370 Back     alignment and structure
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380 Back     alignment and structure
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380 Back     alignment and structure
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long- Chain Hydroxy Acid Oxidase Length = 352 Back     alignment and structure
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2, 3-Thiadiazole. Length = 352 Back     alignment and structure
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226 Back     alignment and structure
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226 Back     alignment and structure
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding Domain Of Baker's Yeast Flavocytochrome B2: Comparison With The Intact Wild- Type Enzyme Length = 412 Back     alignment and structure
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511 Back     alignment and structure
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant Length = 410 Back     alignment and structure
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506 Back     alignment and structure
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511 Back     alignment and structure
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511 Back     alignment and structure
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511 Back     alignment and structure
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511 Back     alignment and structure
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase Length = 374 Back     alignment and structure
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase Length = 374 Back     alignment and structure
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase And A Substrate Analogue At 1.59 Angstrom Resolution Length = 368 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
1gox_A 370 (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu 1e-144
2nzl_A 392 Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G 1e-135
1p4c_A 380 L(+)-mandelate dehydrogenase; TIM barrel, hydroxy 1e-133
3sgz_A 352 Hydroxyacid oxidase 2; flavoprotein, homology, INH 1e-131
2nli_A 368 Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid 1e-129
1kbi_A 511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 1e-118
3sr7_A 365 Isopentenyl-diphosphate delta-isomerase; isopenten 5e-47
1p0k_A 349 Isopentenyl-diphosphate delta-isomerase; terpene b 6e-36
3vkj_A 368 Isopentenyl-diphosphate delta-isomerase; type 2 is 5e-28
1vcf_A332 Isopentenyl-diphosphate delta-isomerase; TIM barre 3e-20
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370 Back     alignment and structure
 Score =  406 bits (1047), Expect = e-144
 Identities = 208/236 (88%), Positives = 221/236 (93%)

Query: 6   EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMT 65
           EITNV EYEA+AK+KLPKMVYDYYASGAEDQWTL ENRNAFSRILFRPRIL DV+ IDMT
Sbjct: 3   EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62

Query: 66  TTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP 125
           TT+LGF ISMPIMIAPTA QKMAHPEGE ATARAASAAGTIMTLSSWATSSVEEV+STGP
Sbjct: 63  TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122

Query: 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
           GIRFFQLYV K RNV AQLV+RAERAGFKAIALTVDTPRLGRREADIKNRFVLPP LTLK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182

Query: 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAED 241
           N+EG+ +GKMDK +DSGL+SYVA QIDRSL+WKDV WLQTITSLPILVKGV+TAED
Sbjct: 183 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAED 238
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392 Back     alignment and structure
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380 Back     alignment and structure
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352 Back     alignment and structure
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368 Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 Back     alignment and structure
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365 Back     alignment and structure
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349 Back     alignment and structure
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368 Back     alignment and structure
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query249
3sgz_A 352 Hydroxyacid oxidase 2; flavoprotein, homology, INH 100.0
2nzl_A 392 Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G 100.0
1p4c_A 380 L(+)-mandelate dehydrogenase; TIM barrel, hydroxy 100.0
2nli_A 368 Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid 100.0
1gox_A 370 (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu 100.0
1kbi_A 511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 100.0
2qr6_A 393 IMP dehydrogenase/GMP reductase; NP_599840.1, G re 99.95
1vcf_A 332 Isopentenyl-diphosphate delta-isomerase; TIM barre 99.91
3sr7_A 365 Isopentenyl-diphosphate delta-isomerase; isopenten 99.86
3r2g_A 361 Inosine 5'-monophosphate dehydrogenase; structural 99.85
1p0k_A 349 Isopentenyl-diphosphate delta-isomerase; terpene b 99.85
1ypf_A 336 GMP reductase; GUAC, purines, pyrimidines, nucleos 99.76
3vkj_A 368 Isopentenyl-diphosphate delta-isomerase; type 2 is 99.75
2c6q_A 351 GMP reductase 2; TIM barrel, metal-binding, NADP, 99.67
1eep_A 404 Inosine 5'-monophosphate dehydrogenase; alpha-beta 99.63
1gte_A 1025 Dihydropyrimidine dehydrogenase; electron transfer 99.0
3khj_A 361 Inosine-5-monophosphate dehydrogenase; enzyme-inhi 98.85
1f76_A336 Dihydroorotate dehydrogenase; monomer, alpha-beta- 98.72
1wv2_A265 Thiazole moeity, thiazole biosynthesis protein THI 98.7
4fo4_A 366 Inosine 5'-monophosphate dehydrogenase; structural 98.42
2e6f_A 314 Dihydroorotate dehydrogenase; chagas disease, pyri 98.38
1vhn_A 318 Putative flavin oxidoreducatase; structural genomi 98.38
3ffs_A 400 Inosine-5-monophosphate dehydrogenase; beta-alpha 98.17
1ep3_A 311 Dihydroorotate dehydrogenase B (PYRD subunit); het 98.14
1jub_A 311 Dihydroorotate dehydrogenase A; homodimer, alpha-b 97.9
1xm3_A264 Thiazole biosynthesis protein THIG; structural gen 97.66
1ea0_A 1479 Glutamate synthase [NADPH] large chain; oxidoreduc 97.59
2z6i_A 332 Trans-2-enoyl-ACP reductase II; fatty acid synthes 97.56
2gjl_A 328 Hypothetical protein PA1024; 2-nitropropane dioxyg 97.38
3b0p_A 350 TRNA-dihydrouridine synthase; TIM barrel, oxidored 96.96
4ef8_A 354 Dihydroorotate dehydrogenase; phenyl isothiocyanat 96.69
3bw2_A 369 2-nitropropane dioxygenase; TIM barrel, oxidoreduc 96.64
3bo9_A 326 Putative nitroalkan dioxygenase; TM0800, structura 96.57
3usb_A 511 Inosine-5'-monophosphate dehydrogenase; structural 96.56
3oix_A345 Putative dihydroorotate dehydrogenase; dihydrooro 96.51
4fxs_A 496 Inosine-5'-monophosphate dehydrogenase; structural 96.43
1ofd_A 1520 Ferredoxin-dependent glutamate synthase 2; oxidore 96.31
1jcn_A 514 Inosine monophosphate dehydrogenase I; IMPD, IMPDH 95.44
1vrd_A 494 Inosine-5'-monophosphate dehydrogenase; TM1347, st 95.42
1jub_A311 Dihydroorotate dehydrogenase A; homodimer, alpha-b 95.22
2htm_A268 Thiazole biosynthesis protein THIG; thiamin biosyn 94.64
3tjx_A 354 Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh 94.61
3zwt_A367 Dihydroorotate dehydrogenase (quinone), mitochond; 94.37
1mzh_A225 Deoxyribose-phosphate aldolase; alpha-beta barrel, 94.37
3tdn_A 247 FLR symmetric alpha-beta TIM barrel; symmetric sup 94.1
1zfj_A 491 Inosine monophosphate dehydrogenase; IMPDH, CBS do 93.82
1ka9_F252 Imidazole glycerol phosphtate synthase; riken stru 93.29
2e6f_A314 Dihydroorotate dehydrogenase; chagas disease, pyri 92.99
1f76_A336 Dihydroorotate dehydrogenase; monomer, alpha-beta- 92.97
1ypf_A 336 GMP reductase; GUAC, purines, pyrimidines, nucleos 92.91
3gr7_A340 NADPH dehydrogenase; flavin, FMN, beta-alpha-barre 92.89
1jvn_A555 Glutamine, bifunctional histidine biosynthesis pro 92.7
1thf_D 253 HISF protein; thermophIle, TIM-barrel, histidine b 92.15
3zwt_A 367 Dihydroorotate dehydrogenase (quinone), mitochond; 92.1
4avf_A 490 Inosine-5'-monophosphate dehydrogenase; oxidoreduc 92.09
4ef8_A354 Dihydroorotate dehydrogenase; phenyl isothiocyanat 92.07
4af0_A 556 Inosine-5'-monophosphate dehydrogenase; oxidoreduc 91.92
1tv5_A443 Dhodehase, dihydroorotate dehydrogenase homolog, m 91.45
1me8_A 503 Inosine-5'-monophosphate dehydrogenase; alpha beta 91.37
1z41_A338 YQJM, probable NADH-dependent flavin oxidoreductas 91.05
2w6r_A266 Imidazole glycerol phosphate synthase subunit HISF 90.7
2y88_A 244 Phosphoribosyl isomerase A; aromatic amino acid bi 89.87
1qo2_A241 Molecule: N-((5-phosphoribosyl)-formimino)-5-amino 89.78
1thf_D253 HISF protein; thermophIle, TIM-barrel, histidine b 89.69
3i65_A415 Dihydroorotate dehydrogenase homolog, mitochondria 89.47
3bw2_A 369 2-nitropropane dioxygenase; TIM barrel, oxidoreduc 89.24
1vyr_A364 Pentaerythritol tetranitrate reductase; oxidoreduc 89.12
4e38_A232 Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho 89.06
3hgj_A349 Chromate reductase; TIM barrel, oxidoreductase; HE 89.03
1y0e_A223 Putative N-acetylmannosamine-6-phosphate 2-epimer; 88.96
1vc4_A 254 Indole-3-glycerol phosphate synthase; lyase, trypt 88.81
1ep3_A311 Dihydroorotate dehydrogenase B (PYRD subunit); het 88.65
2gjl_A 328 Hypothetical protein PA1024; 2-nitropropane dioxyg 88.61
2gou_A365 Oxidoreductase, FMN-binding; OLD yeallow enzyme, f 88.58
2uva_G 2060 Fatty acid synthase beta subunits; fungal, dehydra 88.49
1jcn_A 514 Inosine monophosphate dehydrogenase I; IMPD, IMPDH 88.06
2w6r_A 266 Imidazole glycerol phosphate synthase subunit HISF 88.0
3tsm_A 272 IGPS, indole-3-glycerol phosphate synthase; struct 87.74
3bo9_A 326 Putative nitroalkan dioxygenase; TM0800, structura 87.51
2z6i_A 332 Trans-2-enoyl-ACP reductase II; fatty acid synthes 87.34
1vhn_A 318 Putative flavin oxidoreducatase; structural genomi 87.27
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 86.7
3l5l_A363 Xenobiotic reductase A; TIM barrel, oxidoreductase 86.67
3khj_A 361 Inosine-5-monophosphate dehydrogenase; enzyme-inhi 86.24
1p0k_A349 Isopentenyl-diphosphate delta-isomerase; terpene b 86.02
1h5y_A253 HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py 86.0
3o07_A291 Pyridoxine biosynthesis protein SNZ1; (beta/alpha) 85.39
3sgz_A352 Hydroxyacid oxidase 2; flavoprotein, homology, INH 85.29
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 84.32
1ka9_F 252 Imidazole glycerol phosphtate synthase; riken stru 84.15
2nli_A368 Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid 83.95
2y88_A244 Phosphoribosyl isomerase A; aromatic amino acid bi 83.86
3tdn_A247 FLR symmetric alpha-beta TIM barrel; symmetric sup 83.64
2tps_A227 Protein (thiamin phosphate synthase); thiamin bios 83.26
2cu0_A 486 Inosine-5'-monophosphate dehydrogenase; structural 83.17
1yad_A221 Regulatory protein TENI; TIM barrel, transcription 83.06
2nzl_A392 Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G 83.06
1p4c_A380 L(+)-mandelate dehydrogenase; TIM barrel, hydroxy 83.03
1z41_A 338 YQJM, probable NADH-dependent flavin oxidoreductas 82.98
3ffs_A 400 Inosine-5-monophosphate dehydrogenase; beta-alpha 82.55
3qja_A272 IGPS, indole-3-glycerol phosphate synthase; struct 82.54
1qo2_A 241 Molecule: N-((5-phosphoribosyl)-formimino)-5-amino 82.29
1vzw_A244 Phosphoribosyl isomerase A; histidine biosynthesis 82.14
1yxy_A234 Putative N-acetylmannosamine-6-phosphate 2-epimer; 82.09
3lab_A 217 Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) 81.96
3qja_A 272 IGPS, indole-3-glycerol phosphate synthase; struct 81.58
2r91_A286 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM 80.63
3usb_A 511 Inosine-5'-monophosphate dehydrogenase; structural 80.17
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Back     alignment and structure
Probab=100.00  E-value=2e-72  Score=518.36  Aligned_cols=236  Identities=39%  Similarity=0.646  Sum_probs=215.7

Q ss_pred             CCChHHHHHHHHHhCChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeeccccccc
Q 025657            7 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQK   86 (249)
Q Consensus         7 ~~~i~d~e~~A~~~Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~~   86 (249)
                      ++|++|||++||++||+.+|+||+|||+||.|+++|++||++|+|+||+|+||+++||+|+|||+++++||+|||+|+++
T Consensus         2 ~~~~~d~~~~A~~~lp~~~~~Y~~~ga~~e~t~~~N~~af~~~~l~prvl~dv~~~d~~t~llG~~~~~P~~iaP~g~~~   81 (352)
T 3sgz_A            2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS   81 (352)
T ss_dssp             CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHTCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred             CCCHHHHHHHHHHHCCHHHHHHHhcCCcchHHHHHHHHHHHhceeeccccCCCCCCCCceEECCcccCCcceechHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCC-CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 025657           87 MAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL  165 (249)
Q Consensus        87 l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~  165 (249)
                      |+||+||+++||||+++||||++||.|++|+|||+++.+ ++.|||||+++|++.++++|+||+++||+|||||||+|+.
T Consensus        82 l~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~  161 (352)
T 3sgz_A           82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL  161 (352)
T ss_dssp             GTCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSC
T ss_pred             hcCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence            999999999999999999999999999999999998877 6899999999999999999999999999999999999999


Q ss_pred             CCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHH
Q 025657          166 GRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKL  245 (249)
Q Consensus       166 g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A  245 (249)
                      |+||+|+||+|.+|++++++++....    ......+   .....+++.++|++|+|||+.|++||++|||+++|||++|
T Consensus       162 g~R~~d~r~~~~~p~~~~~~~~~~~~----~~~~~~~---~~~~~~d~~~~w~~i~~lr~~~~~PvivK~v~~~e~A~~a  234 (352)
T 3sgz_A          162 GNRRRDKRNQLNLEANILKAALRALK----EEKPTQS---VPVLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA  234 (352)
T ss_dssp             CCCHHHHHHHHHSCHHHHTTCC----------------------CCCTTCCHHHHHHHHHHCCSCEEEEEECSHHHHHHH
T ss_pred             CcchhhhhcCCCCCcccchhhhcccc----cccccch---hhhhccCCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHH
Confidence            99999999999999888877765421    0001111   1225678999999999999999999999999999999999


Q ss_pred             hhCC
Q 025657          246 LSKE  249 (249)
Q Consensus       246 ~~~~  249 (249)
                      +++|
T Consensus       235 ~~~G  238 (352)
T 3sgz_A          235 MKHN  238 (352)
T ss_dssp             HHTT
T ss_pred             HHcC
Confidence            9987
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Back     alignment and structure
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Back     alignment and structure
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Back     alignment and structure
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Back     alignment and structure
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Back     alignment and structure
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Back     alignment and structure
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Back     alignment and structure
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Back     alignment and structure
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Back     alignment and structure
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Back     alignment and structure
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Back     alignment and structure
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Back     alignment and structure
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Back     alignment and structure
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Back     alignment and structure
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 Back     alignment and structure
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 Back     alignment and structure
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A Back     alignment and structure
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* Back     alignment and structure
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Back     alignment and structure
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Back     alignment and structure
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* Back     alignment and structure
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Back     alignment and structure
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A Back     alignment and structure
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Back     alignment and structure
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Back     alignment and structure
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Back     alignment and structure
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Back     alignment and structure
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* Back     alignment and structure
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Back     alignment and structure
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Back     alignment and structure
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Back     alignment and structure
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} Back     alignment and structure
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Back     alignment and structure
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Back     alignment and structure
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Back     alignment and structure
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Back     alignment and structure
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} Back     alignment and structure
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* Back     alignment and structure
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... Back     alignment and structure
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 Back     alignment and structure
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A Back     alignment and structure
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Back     alignment and structure
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 Back     alignment and structure
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* Back     alignment and structure
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 Back     alignment and structure
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Back     alignment and structure
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* Back     alignment and structure
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A Back     alignment and structure
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A Back     alignment and structure
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... Back     alignment and structure
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* Back     alignment and structure
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* Back     alignment and structure
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 Back     alignment and structure
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Back     alignment and structure
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* Back     alignment and structure
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} Back     alignment and structure
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* Back     alignment and structure
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A Back     alignment and structure
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A Back     alignment and structure
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* Back     alignment and structure
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Back     alignment and structure
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... Back     alignment and structure
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} Back     alignment and structure
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* Back     alignment and structure
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Back     alignment and structure
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 Back     alignment and structure
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* Back     alignment and structure
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Back     alignment and structure
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Back     alignment and structure
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Back     alignment and structure
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} Back     alignment and structure
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 Back     alignment and structure
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Back     alignment and structure
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Back     alignment and structure
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* Back     alignment and structure
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Back     alignment and structure
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Back     alignment and structure
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 Back     alignment and structure
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A Back     alignment and structure
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 Back     alignment and structure
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Back     alignment and structure
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* Back     alignment and structure
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* Back     alignment and structure
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Back     alignment and structure
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* Back     alignment and structure
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Back     alignment and structure
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Back     alignment and structure
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* Back     alignment and structure
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Back     alignment and structure
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* Back     alignment and structure
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A Back     alignment and structure
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Back     alignment and structure
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Back     alignment and structure
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* Back     alignment and structure
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A Back     alignment and structure
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 249
d1goxa_ 359 c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia 1e-69
d1p4ca_ 353 c.1.4.1 (A:) Membrane-associated (S)-mandelate deh 6e-60
d1kbia1 414 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal 2e-56
d1tb3a1 349 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus 1e-55
d1vcfa1310 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i 7e-28
d1p0ka_ 329 c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera 4e-26
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 359 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  215 bits (549), Expect = 1e-69
 Identities = 208/239 (87%), Positives = 221/239 (92%)

Query: 6   EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMT 65
           EITNV EYEA+AK+KLPKMVYDYYASGAEDQWTL ENRNAFSRILFRPRIL DV+ IDMT
Sbjct: 2   EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61

Query: 66  TTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP 125
           TT+LGF ISMPIMIAPTA QKMAHPEGE ATARAASAAGTIMTLSSWATSSVEEV+STGP
Sbjct: 62  TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121

Query: 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
           GIRFFQLYV K RNV AQLV+RAERAGFKAIALTVDTPRLGRREADIKNRFVLPP LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181

Query: 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSK 244
           N+EG+ +GKMDK +DSGL+SYVA QIDRSL+WKDV WLQTITSLPILVKGV+TAED   
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARL 240
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353 Back     information, alignment and structure
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414 Back     information, alignment and structure
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349 Back     information, alignment and structure
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310 Back     information, alignment and structure
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query249
d1tb3a1 349 Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI 100.0
d1goxa_ 359 Glycolate oxidase {Spinach (Spinacia oleracea) [Ta 100.0
d1kbia1 414 Flavocytochrome b2, C-terminal domain {Baker's yea 100.0
d1p4ca_ 353 Membrane-associated (S)-mandelate dehydrogenase {P 100.0
d1p0ka_ 329 Isopentenyl-diphosphate delta-isomerase {Bacillus 99.94
d1vcfa1 310 Isopentenyl-diphosphate delta-isomerase {Thermus t 99.91
d1gtea2 312 Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su 97.73
d1eepa_ 388 Inosine monophosphate dehydrogenase (IMPDH) {Lyme 97.11
d1jr1a1 378 Inosine monophosphate dehydrogenase (IMPDH) {Chine 97.05
d1vrda1 330 Inosine monophosphate dehydrogenase (IMPDH) {Therm 96.87
d1pvna1 362 Inosine monophosphate dehydrogenase (IMPDH) {Tritr 96.77
d1ep3a_311 Dihydroorotate dehydrogenase {Lactococcus lactis, 96.39
d1zfja1 365 Inosine monophosphate dehydrogenase (IMPDH) {Strep 96.36
d2cu0a1 368 Inosine monophosphate dehydrogenase (IMPDH) {Pyroc 95.94
d2b4ga1 312 Dihydroorotate dehydrogenase {Trypanosoma brucei [ 95.16
d1xm3a_251 Thiazole biosynthesis protein ThiG {Bacillus subti 94.75
d1juba_ 311 Dihydroorotate dehydrogenase {Lactococcus lactis, 94.19
d1gtea2312 Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su 93.0
d1wv2a_243 Thiazole biosynthesis protein ThiG {Pseudomonas ae 92.97
d1gvfa_284 Tagatose-1,6-bisphosphate aldolase {Escherichia co 92.93
d1vhna_ 305 Putative flavin oxidoreducatase TM0096 {Thermotoga 87.79
d1y0ea_222 Putative N-acetylmannosamine-6-phosphate 2-epimera 87.16
d1z41a1337 NADPH dehydrogenase NamA {Bacillus subtilis [TaxId 87.12
d1d3ga_ 367 Dihydroorotate dehydrogenase {Human (Homo sapiens) 83.79
d1wbha1 213 KDPG aldolase {Escherichia coli [TaxId: 562]} 83.76
d1yxya1230 Putative N-acetylmannosamine-6-phosphate 2-epimera 83.47
d1ps9a1330 2,4-dienoyl-CoA reductase, N-terminal domain {Esch 82.27
d2b4ga1312 Dihydroorotate dehydrogenase {Trypanosoma brucei [ 81.86
d1vhca_ 212 Hypothetical protein HI0047 {Haemophilus influenza 81.18
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-60  Score=437.57  Aligned_cols=236  Identities=41%  Similarity=0.658  Sum_probs=208.8

Q ss_pred             CCChHHHHHHHHHhCChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeeccccccc
Q 025657            7 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQK   86 (249)
Q Consensus         7 ~~~i~d~e~~A~~~Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~~   86 (249)
                      ++||+|||++||++||+.+|+||+|||+||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|+||++++
T Consensus         2 ~~~i~d~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lG~~l~~P~~Iapmtgg~   81 (349)
T d1tb3a1           2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS   81 (349)
T ss_dssp             CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHHCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred             cccHHHHHHHHHHHCCHHHHHHHhccccccHHHHHHHHHHHhccEEcccccCCCCCCCceeECCcCccceEEEcchhccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCC-CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 025657           87 MAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL  165 (249)
Q Consensus        87 l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~  165 (249)
                      +.|+++|.++|++|+++|++|++||+++.++|+|.++.+ ++.|||+|+++|++.+.++++|++++|++++++|||.|+.
T Consensus        82 ~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~e~v~~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~  161 (349)
T d1tb3a1          82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL  161 (349)
T ss_dssp             GTCTTTHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHSTTCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSC
T ss_pred             ccccchhhHHHHhhhhcccceeecccccccchhhhhhccCCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhh
Confidence            999999999999999999999999999999999987665 7899999999999999999999999999999999999999


Q ss_pred             CCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHH
Q 025657          166 GRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKL  245 (249)
Q Consensus       166 g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A  245 (249)
                      |+|++|+|++|.+|+.+...++......       ...........++.++|++++|||+.|++|+++|||++++||.+|
T Consensus       162 ~~~~~d~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~Kgi~~~~da~~a  234 (349)
T d1tb3a1         162 GNRRRDKRNQLNLEANILLKDLRALKEE-------KPTQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA  234 (349)
T ss_dssp             CCCHHHHHTTCCCCC----CCSCCCCC--------------------CCCCHHHHHHHHTTCCSCEEEEEECSHHHHHHH
T ss_pred             cchhhhhhccccCCcccchhhhhhhhhc-------cccccccccccCCCCCHHHHHHHHHhcCCCcccchhhhhHHHHHH
Confidence            9999999999999876655444322100       000111223346789999999999999999999999999999999


Q ss_pred             hhCC
Q 025657          246 LSKE  249 (249)
Q Consensus       246 ~~~~  249 (249)
                      +++|
T Consensus       235 ~~~G  238 (349)
T d1tb3a1         235 MKHN  238 (349)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            9987
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} Back     information, alignment and structure
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Back     information, alignment and structure
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} Back     information, alignment and structure
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure