Citrus Sinensis ID: 025673

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFFTSSGGLRSFEHPMNELKPVPRVDSSGQVCGSTFKVDAETKKETGMPRVGSAANWSTNL
cEEEccccccccccccccccccccccccHHHHHHHHHccccccccEEEcccEEEEEEEccccccccccccccccEEEEEcEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHcccccEEEEEEEEEccccEEEEEEEcccccEEEEEEccccEEEEEEcHHHHHHHccccccccccccEEEccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccc
ccEEEccccccccHHHccccccccccccHHHHHHHHHHcccccEEEEEcccEEEEEcccccccccccEEEccccEEEEEcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHccccEEEEEEEccccEEEEEEcccccEEEEEEEcccccEEEccHHHHHHHHccccccccccccEEEcccccEEcccccccccEcccccccccEccccEEHHHHHHcccccccccccccccccc
MLAVFDKSvakapealqspqtesACALKNGllanhfssvhpgsvtvNLGSSGVIayslnrqnpllprlFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTlrdrgpypadqvVRDIQGKFAFILYDsssknaflasdadgsvpffwgtdseghlvlsdDVEIvkkgcgksfapfpkacfftssgglrsfehpmnelkpvprvdssgqvcgstfkvdaetkketgmprvgsaanwstnl
mlavfdksvakapealqspqTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFFTSSGGLRSFEHPMNELkpvprvdssgqvCGSTFKvdaetkketgmprvgsaanwstnl
MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFFTSSGGLRSFEHPMNELKPVPRVDSSGQVCGSTFKVDAETKKETGMPRVGSAANWSTNL
************************CALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFFTSSGG*****************************************************
MLAVFDKSVAKA*************************SVHPGSVTVNLGSSGVIAYSLN***********VVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFFTSSGGLRSFEHPMNELKPVPRVDSSGQVCGSTFKVDAETKKETGMPRVGSA*******
MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFFTSSGGLRSFEHPMNELKPVPRVDSSGQVCGSTFKVDAETKKETGMPRVGSAANWSTNL
MLA*FDKSVAKAPEALQSP*****CALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFFTSSGGLRSFEHPMNELKPVPRVDSSGQVCGSTFKVDAETKK*****************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFFTSSGGLRSFEHPMNELKPVPRVDSSGQVCGSTFKVDAETKKETGMPRVGSAANWSTNL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query249 2.2.26 [Sep-21-2011]
P24805149 Stem-specific protein TSJ N/A no 0.586 0.979 0.418 3e-30
P22106 554 Asparagine synthetase B [ N/A no 0.457 0.205 0.277 8e-08
Q10MX3 604 Asparagine synthetase [gl no no 0.506 0.208 0.291 2e-06
Q54MB4 557 Probable asparagine synth yes no 0.289 0.129 0.328 3e-05
Q43011 591 Asparagine synthetase [gl no no 0.461 0.194 0.277 9e-05
P49094 586 Asparagine synthetase [gl N/A no 0.329 0.139 0.297 0.0003
Q9LFU1 578 Asparagine synthetase [gl no no 0.469 0.202 0.268 0.0004
Q9LV77 578 Asparagine synthetase [gl no no 0.485 0.209 0.246 0.0005
>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 94/148 (63%), Gaps = 2/148 (1%)

Query: 1   MLAVFDKSVAKAPEALQSPQT--ESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSL 58
           MLAVF++S+ + P  L  PQ   +   A     +A  F +    S   +L +   +A+S 
Sbjct: 1   MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSH 60

Query: 59  NRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPY 118
             +NPL PR   V+DD+FC+F G ++N   L++ YGL++ A E +I++EAY+ LRDR PY
Sbjct: 61  GNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPY 120

Query: 119 PADQVVRDIQGKFAFILYDSSSKNAFLA 146
           P DQV+++++GKFAFIL+DS +   FLA
Sbjct: 121 PPDQVIKELEGKFAFILFDSKASTLFLA 148

Nicotiana tabacum (taxid: 4097)
>sp|P22106|ASNB_ECOLI Asparagine synthetase B [glutamine-hydrolyzing] OS=Escherichia coli (strain K12) GN=asnB PE=1 SV=3 Back     alignment and function description
>sp|Q10MX3|ASNS1_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Oryza sativa subsp. japonica GN=Os03g0291500 PE=2 SV=1 Back     alignment and function description
>sp|Q54MB4|ASNS_DICDI Probable asparagine synthetase [glutamine-hydrolyzing] OS=Dictyostelium discoideum GN=asns PE=1 SV=1 Back     alignment and function description
>sp|Q43011|ASNS2_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Oryza sativa subsp. japonica GN=Os06g0265000 PE=2 SV=3 Back     alignment and function description
>sp|P49094|ASNS_MAIZE Asparagine synthetase [glutamine-hydrolyzing] OS=Zea mays GN=ASN1 PE=2 SV=2 Back     alignment and function description
>sp|Q9LFU1|ASNS3_ARATH Asparagine synthetase [glutamine-hydrolyzing] 3 OS=Arabidopsis thaliana GN=ASN3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LV77|ASNS2_ARATH Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Arabidopsis thaliana GN=ASN2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
449432660250 PREDICTED: stem-specific protein TSJT1-l 0.995 0.992 0.839 1e-122
255552037249 Stem-specific protein TSJT1, putative [R 0.995 0.995 0.814 1e-121
224111100251 predicted protein [Populus trichocarpa] 0.995 0.988 0.84 1e-120
388508114250 unknown [Medicago truncatula] 1.0 0.996 0.832 1e-120
224099853251 predicted protein [Populus trichocarpa] 0.995 0.988 0.82 1e-119
356535946250 PREDICTED: stem-specific protein TSJT1 [ 1.0 0.996 0.816 1e-118
388501770250 unknown [Lotus japonicus] 0.995 0.992 0.815 1e-118
147805616249 hypothetical protein VITISV_028800 [Viti 0.995 0.995 0.810 1e-118
225432802249 PREDICTED: uncharacterized protein LOC10 0.995 0.995 0.806 1e-117
351727409250 uncharacterized protein LOC100526912 [Gl 1.0 0.996 0.808 1e-116
>gi|449432660|ref|XP_004134117.1| PREDICTED: stem-specific protein TSJT1-like [Cucumis sativus] gi|449504146|ref|XP_004162265.1| PREDICTED: LOW QUALITY PROTEIN: stem-specific protein TSJT1-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/249 (83%), Positives = 231/249 (92%), Gaps = 1/249 (0%)

Query: 1   MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNR 60
           M AVFDKSVAK+P+ALQSP+++S  ALK+G+LA HFSSV+PGSV VNLGSSG++AYS+ +
Sbjct: 1   MFAVFDKSVAKSPDALQSPESDSTWALKDGILAQHFSSVYPGSVIVNLGSSGLLAYSVEK 60

Query: 61  QNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA 120
           QNP+LPRLFAVVDDIFCLFQGHIENVA LKQQYGLNK ANEVIIVIEAYRTLRDRGPYPA
Sbjct: 61  QNPILPRLFAVVDDIFCLFQGHIENVAQLKQQYGLNKAANEVIIVIEAYRTLRDRGPYPA 120

Query: 121 DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK 180
           DQVVRDIQGKF FILYDSSSK +F ASDADGSVPF WGTDSEG LVLSDDVEI+KKGCGK
Sbjct: 121 DQVVRDIQGKFVFILYDSSSKTSFFASDADGSVPFHWGTDSEGQLVLSDDVEIMKKGCGK 180

Query: 181 SFAPFPKACFFTSSGGLRSFEHPMNELKPVPRVDSSGQVCGSTFKVDAETKKE-TGMPRV 239
           SFAPFPK CFFT+SGGLRS+EHP+NELKPVPRVDSSG VCG+ FKVDAE +KE +GMPRV
Sbjct: 181 SFAPFPKGCFFTTSGGLRSYEHPLNELKPVPRVDSSGNVCGANFKVDAEARKESSGMPRV 240

Query: 240 GSAANWSTN 248
           GSAANWS+N
Sbjct: 241 GSAANWSSN 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255552037|ref|XP_002517063.1| Stem-specific protein TSJT1, putative [Ricinus communis] gi|223543698|gb|EEF45226.1| Stem-specific protein TSJT1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224111100|ref|XP_002315748.1| predicted protein [Populus trichocarpa] gi|222864788|gb|EEF01919.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388508114|gb|AFK42123.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224099853|ref|XP_002311645.1| predicted protein [Populus trichocarpa] gi|222851465|gb|EEE89012.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356535946|ref|XP_003536502.1| PREDICTED: stem-specific protein TSJT1 [Glycine max] Back     alignment and taxonomy information
>gi|388501770|gb|AFK38951.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|147805616|emb|CAN71784.1| hypothetical protein VITISV_028800 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225432802|ref|XP_002283483.1| PREDICTED: uncharacterized protein LOC100242660 [Vitis vinifera] gi|297737115|emb|CBI26316.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|351727409|ref|NP_001235880.1| uncharacterized protein LOC100526912 [Glycine max] gi|255631135|gb|ACU15933.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
TAIR|locus:2084598248 AT3G22850 "AT3G22850" [Arabido 0.995 1.0 0.771 1.4e-103
TAIR|locus:2170822251 AT5G43830 "AT5G43830" [Arabido 1.0 0.992 0.749 3.4e-100
TAIR|locus:2123994250 AT4G27450 "AT4G27450" [Arabido 0.979 0.976 0.490 4.8e-62
TAIR|locus:2090116253 AT3G15450 "AT3G15450" [Arabido 0.979 0.964 0.48 1.2e-60
TAIR|locus:2182137234 AILP1 "AT5G19140" [Arabidopsis 0.915 0.974 0.456 7.8e-55
UNIPROTKB|P22106 554 asnB [Escherichia coli K-12 (t 0.453 0.203 0.299 6.9e-07
DICTYBASE|DDB_G0286059 557 asns "asparagine synthetase" [ 0.353 0.157 0.326 6.5e-05
FB|FBgn0041607 558 asparagine-synthetase "asparag 0.493 0.220 0.251 0.00041
TAIR|locus:2177694 578 ASN2 "asparagine synthetase 2" 0.598 0.257 0.231 0.00057
TAIR|locus:2145377 578 ASN3 "asparagine synthetase 3" 0.465 0.200 0.271 0.00059
TAIR|locus:2084598 AT3G22850 "AT3G22850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
 Identities = 192/249 (77%), Positives = 214/249 (85%)

Query:     1 MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNR 60
             MLA+FDK+VAK PEALQ  +  S CALK+  L NHFSSV+PG+VT+NLGSSG IA SL +
Sbjct:     1 MLAIFDKNVAKTPEALQGQEGGSVCALKDRFLPNHFSSVYPGAVTINLGSSGFIACSLEK 60

Query:    61 QNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA 120
             QNPLLPRLFAVVDD+FC+FQGHIENV +LKQQYGL KTA EV IVIEAYRTLRDRGPY A
Sbjct:    61 QNPLLPRLFAVVDDMFCIFQGHIENVPILKQQYGLTKTATEVTIVIEAYRTLRDRGPYSA 120

Query:   121 DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK 180
             +QVVRD QGKF F+LYD S++N FLA D DGSVP +WGTD+EGHLV+SDDVE VKKGCGK
Sbjct:   121 EQVVRDFQGKFGFMLYDCSTQNVFLAGDVDGSVPLYWGTDAEGHLVVSDDVETVKKGCGK 180

Query:   181 SFAPFPKACFFTSSGGLRSFEHPMNELKPVPRVDSSGQVCGSTFKVDAETKKETGMPRVG 240
             SFAPFPK CFFTSSGGLRS+EHP NELKPVPRVDSSG+VCG TFKVD+E KKE  MPRVG
Sbjct:   181 SFAPFPKGCFFTSSGGLRSYEHPSNELKPVPRVDSSGEVCGVTFKVDSEAKKEA-MPRVG 239

Query:   241 SAANWSTNL 249
             S  NWS  +
Sbjct:   240 SVQNWSKQI 248
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
GO:0006598 "polyamine catabolic process" evidence=RCA
GO:0009698 "phenylpropanoid metabolic process" evidence=RCA
GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA
TAIR|locus:2170822 AT5G43830 "AT5G43830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123994 AT4G27450 "AT4G27450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090116 AT3G15450 "AT3G15450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182137 AILP1 "AT5G19140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P22106 asnB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286059 asns "asparagine synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0041607 asparagine-synthetase "asparagine synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2177694 ASN2 "asparagine synthetase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145377 ASN3 "asparagine synthetase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
pfam12481228 pfam12481, DUF3700, Aluminium induced protein 1e-154
cd01910224 cd01910, Wali7, This domain is present in Wali7, a 1e-141
cd00352220 cd00352, Gn_AT_II, Glutamine amidotransferases cla 9e-17
PRK09431 554 PRK09431, asnB, asparagine synthetase B; Provision 9e-08
PLN02549 578 PLN02549, PLN02549, asparagine synthase (glutamine 3e-06
PTZ00077 586 PTZ00077, PTZ00077, asparagine synthetase-like pro 5e-04
COG0367 542 COG0367, AsnB, Asparagine synthase (glutamine-hydr 0.003
>gnl|CDD|221596 pfam12481, DUF3700, Aluminium induced protein Back     alignment and domain information 
 Score =  426 bits (1098), Expect = e-154
 Identities = 154/228 (67%), Positives = 185/228 (81%), Gaps = 3/228 (1%)

Query: 2   LAVFDKSVAKAPEALQSPQTES-ACALKNG--LLANHFSSVHPGSVTVNLGSSGVIAYSL 58
           LAVF KSVAK PE L SP +   + A K G   L   F S +P +V+VN G S  +AYS 
Sbjct: 1   LAVFHKSVAKPPEELNSPASRLPSSAKKKGPEELLKDFVSANPNAVSVNFGDSAFLAYSH 60

Query: 59  NRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPY 118
           ++Q+PLLPRLFAVVDDIFCLFQGH+EN+A L+QQYGL+KTANE ++VIEAYRTLRDRGPY
Sbjct: 61  SKQSPLLPRLFAVVDDIFCLFQGHLENLASLRQQYGLSKTANEAMLVIEAYRTLRDRGPY 120

Query: 119 PADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGC 178
           PADQVV+D++G FAF+LYDS +   F+A DADGSVP FWG  ++G LV SDD+E++K GC
Sbjct: 121 PADQVVKDLEGSFAFVLYDSKTGTVFVALDADGSVPLFWGIAADGSLVFSDDLELLKAGC 180

Query: 179 GKSFAPFPKACFFTSSGGLRSFEHPMNELKPVPRVDSSGQVCGSTFKV 226
           GKSFAPFP+ CFF+S GGLRSFEHPMN+LK VPRVDS GQ+CG+TFKV
Sbjct: 181 GKSFAPFPQGCFFSSEGGLRSFEHPMNKLKAVPRVDSEGQMCGATFKV 228

This domain family is found in eukaryotes, and is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR. This family is related to GATase enzyme domains. Length = 228
>gnl|CDD|238891 cd01910, Wali7, This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum Back     alignment and domain information
>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase) Back     alignment and domain information
>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional Back     alignment and domain information
>gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 249
cd01910224 Wali7 This domain is present in Wali7, a protein o 100.0
PF12481228 DUF3700: Aluminium induced protein ; InterPro: IPR 100.0
PLN02549 578 asparagine synthase (glutamine-hydrolyzing) 100.0
PRK09431 554 asnB asparagine synthetase B; Provisional 100.0
PTZ00077 586 asparagine synthetase-like protein; Provisional 100.0
COG0367 542 AsnB Asparagine synthase (glutamine-hydrolyzing) [ 100.0
TIGR03104 589 trio_amidotrans asparagine synthase family amidotr 100.0
TIGR01536 467 asn_synth_AEB asparagine synthase (glutamine-hydro 100.0
TIGR03108 628 eps_aminotran_1 exosortase 1 system-associated ami 100.0
cd00712220 AsnB Glutamine amidotransferases class-II (GATase) 100.0
KOG0571 543 consensus Asparagine synthase (glutamine-hydrolyzi 100.0
cd01909199 betaLS_CarA_N Glutamine amidotransferases class-II 100.0
cd03766181 Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn 99.97
PRK07631 475 amidophosphoribosyltransferase; Provisional 99.97
PRK08525 445 amidophosphoribosyltransferase; Provisional 99.97
PRK06388 474 amidophosphoribosyltransferase; Provisional 99.96
PRK08341 442 amidophosphoribosyltransferase; Provisional 99.96
cd00714215 GFAT Glutamine amidotransferases class-II (Gn-AT)_ 99.96
PRK07272 484 amidophosphoribosyltransferase; Provisional 99.96
PRK06781 471 amidophosphoribosyltransferase; Provisional 99.96
PRK07847 510 amidophosphoribosyltransferase; Provisional 99.96
PF13537125 GATase_7: Glutamine amidotransferase domain; PDB: 99.96
PRK07349 500 amidophosphoribosyltransferase; Provisional 99.96
PRK09123 479 amidophosphoribosyltransferase; Provisional 99.96
cd00715252 GPATase_N Glutamine amidotransferases class-II (GN 99.96
PRK05793 469 amidophosphoribosyltransferase; Provisional 99.95
PLN02440 479 amidophosphoribosyltransferase 99.95
PRK00331 604 glucosamine--fructose-6-phosphate aminotransferase 99.95
PRK09246 501 amidophosphoribosyltransferase; Provisional 99.95
TIGR01135 607 glmS glucosamine--fructose-6-phosphate aminotransf 99.95
cd01907249 GlxB Glutamine amidotransferases class-II (Gn-AT)_ 99.95
TIGR01134 442 purF amidophosphoribosyltransferase. Alternate nam 99.94
cd00352220 Gn_AT_II Glutamine amidotransferases class-II (GAT 99.93
PTZ00295 640 glucosamine-fructose-6-phosphate aminotransferase; 99.93
PF13522133 GATase_6: Glutamine amidotransferase domain 99.9
COG0034 470 PurF Glutamine phosphoribosylpyrophosphate amidotr 99.9
KOG0572 474 consensus Glutamine phosphoribosylpyrophosphate am 99.89
PTZ00394 670 glucosamine-fructose-6-phosphate aminotransferase; 99.84
PLN02981 680 glucosamine:fructose-6-phosphate aminotransferase 99.84
COG0449 597 GlmS Glucosamine 6-phosphate synthetase, contains 99.74
cd00713413 GltS Glutamine amidotransferases class-II (Gn-AT), 99.65
cd01908257 YafJ Glutamine amidotransferases class-II (Gn-AT)_ 99.59
TIGR03442251 conserved hypothetical protein TIGR03442. Members 99.57
KOG0573 520 consensus Asparagine synthase [Amino acid transpor 99.43
PF00310361 GATase_2: Glutamine amidotransferases class-II; In 99.32
PRK11750 1485 gltB glutamate synthase subunit alpha; Provisional 99.03
KOG1268 670 consensus Glucosamine 6-phosphate synthetases, con 98.8
PF13230271 GATase_4: Glutamine amidotransferases class-II; PD 98.17
PF09147201 DUF1933: Domain of unknown function (DUF1933); Int 97.98
COG0067371 GltB Glutamate synthase domain 1 [Amino acid trans 97.58
COG0121252 Predicted glutamine amidotransferase [General func 88.11
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum Back     alignment and domain information 
Probab=100.00  E-value=2.9e-54  Score=374.45  Aligned_cols=224  Identities=65%  Similarity=1.129  Sum_probs=205.1

Q ss_pred             eeeccccccCCCcccCCCCCcccccccHHHHHHHHHhcCCCccceeccceeEEeccCCCCCCCcCcccccCCcEEEEEEE
Q 025673            2 LAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQG   81 (249)
Q Consensus         2 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~m~~~l~hRGpd~~~~~~~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NG   81 (249)
                      |+||+++||++|+||++|++.+. ++...++++.+....|+..++.+|..+.++++++++.|++|+.++.++++++++||
T Consensus         1 laif~~~~~~~p~el~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfnG   79 (224)
T cd01910           1 LAVFSKAVAKPPEELVSAGSRTP-AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQG   79 (224)
T ss_pred             CcccccccCCCChHHcCCCcccc-CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEEe
Confidence            79999999999999999986333 44467899999999999999999988899998666558988889888999999999


Q ss_pred             EEcchHHHHHHhcCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEec
Q 025673           82 HIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDS  161 (249)
Q Consensus        82 eI~N~~eL~~~L~~~~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~  161 (249)
                      ||||+.+|+++|+..++.+|+|+|+++|++++++|+++..+++++|+|+|||+|||++++++++|||++|++||||+...
T Consensus        80 eIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~~  159 (224)
T cd01910          80 HLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIAA  159 (224)
T ss_pred             EEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEeC
Confidence            99999999999977788999999999999977778777768999999999999999999999999999999999999876


Q ss_pred             CCeEEEEecchhhhhccCCceEEecCCeEEEeCCeeEEeecCCCCCCCCCCCCChhhhhcceece
Q 025673          162 EGHLVLSDDVEIVKKGCGKSFAPFPKACFFTSSGGLRSFEHPMNELKPVPRVDSSGQVCGSTFKV  226 (249)
Q Consensus       162 dg~~~fASe~~aL~~~~~~~i~~lpPG~~~~~~~gi~~y~~p~~~~~~~~~~d~~~~~~~~~f~~  226 (249)
                      +|.++||||+++|...|.+.+..||||||+.+.+|+++|++|..+++++||+|++|++||++|||
T Consensus       160 dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s~ggl~~~~~p~~~~~~vp~~~s~g~~cg~~f~v  224 (224)
T cd01910         160 DGSVVFSDDVELVKASCGKSFAPFPKGCFFHSEGGLRSFEHPMNKLKAVPRVDSEGEMCGATFKV  224 (224)
T ss_pred             CCEEEEEeCHHHhhhhhccEEEEECCCCEEeCCCCEEEeeCCCchhhcCCcccCcccEecceeeC
Confidence            78999999999999999778999999999987777999999999999999999999999999975

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length Back     alignment and domain information
>PLN02549 asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>PRK09431 asnB asparagine synthetase B; Provisional Back     alignment and domain information
>PTZ00077 asparagine synthetase-like protein; Provisional Back     alignment and domain information
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase Back     alignment and domain information
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1 Back     alignment and domain information
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type Back     alignment and domain information
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type Back     alignment and domain information
>cd03766 Gn_AT_II_novel Gn_AT_II_novel Back     alignment and domain information
>PRK07631 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK08525 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK06388 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK08341 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type Back     alignment and domain information
>PRK07272 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK06781 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK07847 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A Back     alignment and domain information
>PRK07349 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK09123 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type Back     alignment and domain information
>PRK05793 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PLN02440 amidophosphoribosyltransferase Back     alignment and domain information
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed Back     alignment and domain information
>PRK09246 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing) Back     alignment and domain information
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type Back     alignment and domain information
>TIGR01134 purF amidophosphoribosyltransferase Back     alignment and domain information
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase) Back     alignment and domain information
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional Back     alignment and domain information
>PF13522 GATase_6: Glutamine amidotransferase domain Back     alignment and domain information
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] Back     alignment and domain information
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional Back     alignment and domain information
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase Back     alignment and domain information
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type Back     alignment and domain information
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type Back     alignment and domain information
>TIGR03442 conserved hypothetical protein TIGR03442 Back     alignment and domain information
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group Back     alignment and domain information
>PRK11750 gltB glutamate synthase subunit alpha; Provisional Back     alignment and domain information
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D Back     alignment and domain information
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices Back     alignment and domain information
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism] Back     alignment and domain information
>COG0121 Predicted glutamine amidotransferase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
1ct9_A 553 Crystal Structure Of Asparagine Synthetase B From E 6e-09
>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From Escherichia Coli Length = 553 Back     alignment and structure 
Iteration: 1

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 81  GHIENVALLKQQYGLN---KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYD 137
           G I N   L+ +YG     +T ++  +++  Y+   ++GP    + + D+QG FAF LYD
Sbjct: 75  GEIYNHQALRAEYGDRYQFQTGSDCEVILALYQ---EKGP----EFLDDLQGMFAFALYD 127
Query: 138 SSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFFTSSGG- 196
           S      +  D  G +P + G D  G L ++ +++ +   C ++   FP   +  S  G 
Sbjct: 128 SEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSYLWSQDGE 186
Query: 197 LRSFEH 202
           +RS+ H
Sbjct: 187 IRSYYH 192

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
1ct9_A 553 Asparagine synthetase B; amidotransferase, substra 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Length = 553 Back     alignment and structure
 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 30/144 (20%)

Query: 73  DDIFCLFQGHIENVALLKQQYGLN---KTAN--EVIIVIEAYRTLRDRGPYPADQVVRDI 127
                   G I N   L+ +YG     +T +  EVI+    Y+   ++GP    + + D+
Sbjct: 67  KTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVIL--ALYQ---EKGP----EFLDDL 117

Query: 128 QGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLV-------LSDDVEIVKKGCGK 180
           QG FAF LYDS      +  D  G +P + G D  G L        L      +K+    
Sbjct: 118 QGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKE---- 173

Query: 181 SFAPFPKACFFTSS-GGLRSFEHP 203
               FP   +  S  G +RS+ H 
Sbjct: 174 ----FPAGSYLWSQDGEIRSYYHR 193
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query249
1ct9_A 553 Asparagine synthetase B; amidotransferase, substra 100.0
1jgt_A 513 Beta-lactam synthetase; asparagine synthetase, cla 99.97
1ao0_A 459 Glutamine phosphoribosylpyrophosphate amidotransfe 99.97
1xff_A240 D-fructose-6-, glucosamine--fructose-6-phosphate a 99.97
1q15_A 503 CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, 99.95
1ecf_A 504 Glutamine phosphoribosylpyrophosphate amidotransf; 99.95
2bpl_A 608 Glucosamine--fructose-6-phosphate aminotransferase 99.94
3mdn_A274 Glutamine aminotransferase class-II domain protei; 99.89
1te5_A257 Conserved hypothetical protein; glutamine amidotra 99.61
1ea0_A 1479 Glutamate synthase [NADPH] large chain; oxidoreduc 99.54
1ofd_A 1520 Ferredoxin-dependent glutamate synthase 2; oxidore 99.47
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Back     alignment and structure
Probab=100.00  E-value=8.1e-38  Score=303.86  Aligned_cols=199  Identities=22%  Similarity=0.386  Sum_probs=164.3

Q ss_pred             cHHHHHHHHHhcCCCccc--------eeccceeEEeccCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC---C
Q 025673           28 KNGLLANHFSSVHPGSVT--------VNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL---N   96 (249)
Q Consensus        28 ~~~~m~~~l~hRGpd~~~--------~~~~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~---~   96 (249)
                      .+.+|+++|.|||||+..        +++.||+|++.+ .+.||+    .+.+++++++|||+|||+.+||++|..   |
T Consensus        19 ~~~~m~~~l~hRGpD~~G~~~~~~~~lgh~Rlsi~~~~-~~~QP~----~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~f   93 (553)
T 1ct9_A           19 KALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVN-AGAQPL----YNQQKTHVLAVNGEIYNHQALRAEYGDRYQF   93 (553)
T ss_dssp             HHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTT-TCCSSE----ECTTSCEEEEEEEEETTHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHhccCCCcccEEEECCEEEEEEeeeeeCCC-CCCCCe----EeCCCCEEEEEEEEEECHHHHHHHHhccCcc
Confidence            367899999999999843        344489999987 789999    356788999999999999999999963   8


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhh
Q 025673           97 KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKK  176 (249)
Q Consensus        97 ~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~  176 (249)
                      .+.||+|+|+++|++   +|.    +++++|+|+|||++||.++++|+++||++|+|||||+...++.++||||+++|..
T Consensus        94 ~s~sDtEvil~l~~~---~g~----~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~~  166 (553)
T 1ct9_A           94 QTGSDCEVILALYQE---KGP----EFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVP  166 (553)
T ss_dssp             CSCCTTHHHHHHHHH---HTT----TTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTT
T ss_pred             CCCCcHHHHHHHHHH---HHH----HHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHHh
Confidence            899999999999998   664    7999999999999999988999999999999999999854567999999999987


Q ss_pred             ccCCceEEecCCeEEEeCC-eeEEeecCCCCC-CCCCCCCChhhhhcceeceeeccccc-CCCCCCCc
Q 025673          177 GCGKSFAPFPKACFFTSSG-GLRSFEHPMNEL-KPVPRVDSSGQVCGSTFKVDAETKKE-TGMPRVGS  241 (249)
Q Consensus       177 ~~~~~i~~lpPG~~~~~~~-gi~~y~~p~~~~-~~~~~~d~~~~~~~~~f~~~~~~~~~-~~~p~~~~  241 (249)
                      .+ ++|++|||||++..++ .+++||+|.... ...+..+..-+.++..+ .+|+.+|. +++| ||.
T Consensus       167 ~~-~~i~~l~pG~~~~~~~g~~~~yw~~~~~~~~~~~~~~~~~~~lr~~L-~~aV~~rl~sdvp-vgv  231 (553)
T 1ct9_A          167 VC-RTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQAL-EDSVKSHLMSDVP-YGV  231 (553)
T ss_dssp             TC-SEEEECCTTEEEETTTCSEEECCCCGGGSHHHHTTCCCCHHHHHHHH-HHHHHHHTCCSSC-EEE
T ss_pred             hc-CCEEEECCCeEEEEcCCcEEEeecCCccccccCCCHHHHHHHHHHHH-HHHHHHHhcCCCc-eEE
Confidence            55 5799999999996543 489999976321 11222234446688888 89999987 8888 663
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Back     alignment and structure
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1* Back     alignment and structure
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A* Back     alignment and structure
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* Back     alignment and structure
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A* Back     alignment and structure
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A* Back     alignment and structure
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi} Back     alignment and structure
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1 Back     alignment and structure
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Back     alignment and structure
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query249
d1ct9a2192 Asparagine synthetase B, N-terminal domain {Escher 100.0
d1jgta2206 beta-Lactam synthetase {Streptomyces clavuligerus 100.0
d1q15a2204 beta-Lactam synthetase {Pectobacterium carotovorum 99.98
d1gph12234 Glutamine PRPP amidotransferase, N-terminal domain 99.96
d1ecfa2249 Glutamine PRPP amidotransferase, N-terminal domain 99.93
d1xffa_238 Glucosamine 6-phosphate synthase, N-terminal domai 99.92
d1te5a_253 Hypothetical protein YafJ (PA1307) {Pseudomonas ae 98.84
d1ea0a3422 Alpha subunit of glutamate synthase, N-terminal do 98.64
d1ofda3430 Alpha subunit of glutamate synthase, N-terminal do 98.64
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-40  Score=280.73  Aligned_cols=164  Identities=24%  Similarity=0.470  Sum_probs=141.2

Q ss_pred             cccHHHHHHHHHhcCCCccc--------eeccceeEEeccCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC--
Q 025673           26 ALKNGLLANHFSSVHPGSVT--------VNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL--   95 (249)
Q Consensus        26 ~~~~~~m~~~l~hRGpd~~~--------~~~~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~--   95 (249)
                      ...+.+|++.|+|||||+..        +++.||+|.+.+. +.||.    ...+++++++|||||||+.+|+++|..  
T Consensus        17 ~~~~~~m~~~l~hRGpD~~~~~~~~~~~lgh~Rlsi~~~~~-~~~~~----~~~~~~~~lv~NGeI~N~~~l~~~l~~~~   91 (192)
T d1ct9a2          17 RKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNA-GAQPL----YNQQKTHVLAVNGEIYNHQALRAEYGDRY   91 (192)
T ss_dssp             HHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTT-CCSSE----ECTTSCEEEEEEEEETTHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHhcccCCCCCCeEEeCCEEEEEEEEEEccccC-Ccccc----cccCCceEEEecCccchhHHHHHHHhcCc
Confidence            34588999999999999953        4445888888764 45554    246778999999999999999999864  


Q ss_pred             -CCCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhh
Q 025673           96 -NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIV  174 (249)
Q Consensus        96 -~~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL  174 (249)
                       +.+.+|+|+++++|++   +|.    +++++|+|+|||++||..+++|+++|||+|+|||||+..++|.++||||+++|
T Consensus        92 ~~~s~sDtevll~~~~~---~g~----~~~~~l~G~fa~~i~d~~~~~l~~aRD~~G~kPLyy~~~~~g~~~fsSE~k~L  164 (192)
T d1ct9a2          92 QFQTGSDCEVILALYQE---KGP----EFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKAL  164 (192)
T ss_dssp             CCCSCCTTHHHHHHHHH---HTT----TTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGT
T ss_pred             ccCCCCcHHHHHHHhhh---cch----hhhhhhhhheEEEEEecCcceeEEEEccccceeEEEEEecCcEEEEEeCHHHH
Confidence             6788999999999998   664    79999999999999999999999999999999999999766679999999999


Q ss_pred             hhccCCceEEecCCeEEEe-CCeeEEeec
Q 025673          175 KKGCGKSFAPFPKACFFTS-SGGLRSFEH  202 (249)
Q Consensus       175 ~~~~~~~i~~lpPG~~~~~-~~gi~~y~~  202 (249)
                      ...+. .|++||||||++. ++++++||+
T Consensus       165 ~~~~~-~i~~~~pG~~l~~~~~~i~~y~~  192 (192)
T d1ct9a2         165 VPVCR-TIKEFPAGSYLWSQDGEIRSYYH  192 (192)
T ss_dssp             TTTCS-EEEECCTTEEEETTTCSEEECCC
T ss_pred             HHhhC-CeEEcCCccEEEEcCCcEEeecC
Confidence            98874 6999999999965 556999995
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]} Back     information, alignment and structure
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]} Back     information, alignment and structure