Citrus Sinensis ID: 025675

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCS
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHHHHHHHHHcccEEEEcccEEEEEEEEEEccEEEEEEEccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHEEccccccEEcccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEEEHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccEEEEEEEc
Coil and Loop (DISEMBL)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTfiyyrnrtrppltvSIICKIFGLGLISCCVQTCLYvgigyssptlssaivdlTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKgpalvsmssssnlhnelrspqknwiIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAernpnswrlkpdteliaigcs
Flexible Loop (DISEMBL)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAernpnswrlkpdteliaigcs
Low Complexity Region (SEG)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCS
Disordered region (IsUnstruct)
**SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALV****************KNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAI***
Disordered Region (DISOPRED)
***VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM***************NWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCS
Disordered Region (DISEMBL)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCS
Disordered Region (DISPRO)
*WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSS************KNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
Q9FL08	368	WAT1-related protein At5g	yes	no	0.955	0.646	0.469	3e-50
Q94JU2	367	WAT1-related protein At3g	no	no	0.963	0.653	0.479	8e-48
Q945L4	339	WAT1-related protein At5g	no	no	0.895	0.657	0.453	7e-45
F4KHA8	370	WAT1-related protein At5g	no	no	0.947	0.637	0.436	3e-43
F4JK59	347	WAT1-related protein At4g	no	no	0.919	0.659	0.438	9e-38
Q9LRS5	353	WAT1-related protein At3g	no	no	0.947	0.668	0.407	7e-36
Q9SUF1	384	WAT1-related protein At4g	no	no	0.943	0.611	0.353	5e-35
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.935	0.613	0.357	1e-33
Q56X95	355	WAT1-related protein At3g	no	no	0.939	0.659	0.387	2e-33
F4IYZ0	358	WAT1-related protein At3g	no	no	0.947	0.659	0.386	8e-32

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  198 bits (503), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 115/245 (46%), Positives = 155/245 (63%), Gaps = 7/245 (2%)

Query: 8   AVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLT 67
           A M AVEC  VGS+TL KAA  +G S +V + YS   + + +LLP + I+ R+R  P   
Sbjct: 22  AAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTL-LLLPLSVIFGRSRRLPAAK 80

Query: 68  VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRV 127
             +  KIF LGL+    Q     GI YSSPTL+SAI +LTPAFTF LA+I RME++ LR 
Sbjct: 81  SPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVIFRMEQVRLRS 140

Query: 128 QSSLAKSIGTMVSIAGALTVTLYKGPALVSMSS------SSNLHNELRSPQKNWIIGGLV 181
            ++ AK IG ++SI+GAL V LYKGP +++ +S      +  LH +L S + +WIIGGL+
Sbjct: 141 SATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSIESSWIIGGLL 200

Query: 182 LAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDT 241
           LA+  F +S+ YI+QT ++  YPEE+   F   +F T+ S  V L AE N  SW LKPD 
Sbjct: 201 LASQYFLISVWYILQTRVMEVYPEEITVVFFYNLFATLISVPVCLFAESNLTSWVLKPDI 260

Query: 242 ELIAI 246
            L AI
Sbjct: 261 SLAAI 265

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  190 bits (483), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 118/246 (47%), Positives = 158/246 (64%), Gaps = 6/246 (2%)

Query: 6   VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP 65
           VTA +V +EC  VG +TL KAA  KG S  V IVYS   AA+ +LLPS F  +R+RT PP
Sbjct: 13  VTA-LVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAAL-LLLPSLFCSFRSRTLPP 70

Query: 66  LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDL 125
           +  SI+ KI  LG+I CC     Y GI YSSPTL+SAI +LTPAFTF+LA++ RME +  
Sbjct: 71  MNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESVSF 130

Query: 126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS-NLHNELRSPQKNWIIGGLVLAA 184
           +  SS+AK +GT+VSI GA  VTLY GP +++ S  S +L ++  +P  NWI+G   LA 
Sbjct: 131 KRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNP--NWILGAGFLAV 188

Query: 185 GSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNP-NSWRLKPDTEL 243
             F + L YIVQT I+REYP E        + V+  + +V L  E N   +W++KP+  L
Sbjct: 189 EYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKIKPNIAL 248

Query: 244 IAIGCS 249
           ++I CS
Sbjct: 249 VSIVCS 254

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  180 bits (457), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 108/238 (45%), Positives = 150/238 (63%), Gaps = 15/238 (6%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           MV  E   VG +TL KAA +KG S FV++VYS  F ++ +LLP TF  +R+R+ PPLT S
Sbjct: 17  MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSL-LLLPLTFFSFRSRSLPPLTFS 75

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+C +  LGLI+   Q   Y GI YSSPTLSSA+ ++ PAFTFILA++ RME + L  +S
Sbjct: 76  ILCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKS 135

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFL 189
           S+AK +GT++SI GAL VTLY GP L  MSS S           +WIIGG +LA     +
Sbjct: 136 SVAKVLGTILSIIGALVVTLYHGPML--MSSHS-----------DWIIGGGLLALQYILV 182

Query: 190 SLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDTELIAI 246
           S+ Y+V    +  YP  ++ T +  V + +    V+L+AE+ NP +W ++ D  LI +
Sbjct: 183 SVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLITV 240

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  175 bits (444), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/243 (43%), Positives = 152/243 (62%), Gaps = 7/243 (2%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           MVAVEC+ VGS+TL KAA  +G S +V + Y+   A + +LLP + I+ R++  P     
Sbjct: 25  MVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATL-VLLPLSLIFGRSKRLPSAKTP 83

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           +   IF L L+          GI YSSPTL+SAI +LTPAFTF LA+I RME++ LR  +
Sbjct: 84  VFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQIVLRSSA 143

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS------NLHNELRSPQKNWIIGGLVLA 183
           + AK IGT+VSI+GAL V LYKGP +++ +S +      +L+  L S   +WIIGGL+LA
Sbjct: 144 TQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWIIGGLLLA 203

Query: 184 AGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTEL 243
                +S+ YI+QT ++  YPEE+   F+  +  T+ S  V L AE++ NS+ LKP   L
Sbjct: 204 TQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNSFILKPGVSL 263

Query: 244 IAI 246
            ++
Sbjct: 264 ASV 266

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  157 bits (396), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 104/237 (43%), Positives = 147/237 (62%), Gaps = 8/237 (3%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A+EC  VGSS L KAA  +G S +V + Y+    A  +LL  + I+ R+R+ P    S
Sbjct: 21  MIAIECTTVGSSILYKAATLRGFSFYVFVFYAYV-GATLVLLLLSLIFGRSRSLPTAKSS 79

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           +  KIF L L+    +     GI YSSPTLSSAI +LTPAFTFILA+  RME++ LR  +
Sbjct: 80  LFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQVMLRSSA 139

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFL 189
           + AK IGT+VSI+GAL + LYKGP L+  +S ++        + +WIIGGL+L      L
Sbjct: 140 TQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSF-------ESSWIIGGLLLGLQFLLL 192

Query: 190 SLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAI 246
           S+ +I+QT I+  YPEE+   F   +  T+ S  V L+ E++ NSW+LKP   L ++
Sbjct: 193 SVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLKPGFSLASV 249

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score =  150 bits (379), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 99/243 (40%), Positives = 149/243 (61%), Gaps = 7/243 (2%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A E   VG STL K A +KG + +  + YS   A++ +L  S F   R+R+ PPL++S
Sbjct: 18  MLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLP-SLFFTDRSRSLPPLSLS 76

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+ KI  LGL+        Y+GI YSSPTL+SAI ++TPA TFILA+I RMEK+  + +S
Sbjct: 77  ILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKVSFKERS 136

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNE-----LRSPQKNWIIGGLVLAA 184
           S+AK +GT++S+ GAL V LY GP +   SS   ++       L S   +W+IGG +L  
Sbjct: 137 SVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLIGGALLTI 196

Query: 185 GSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDTEL 243
              F+S+ +I+Q  I+  YP     +F+  V V+I ++++ L+ E+ NP+ W ++ D  L
Sbjct: 197 RDIFVSVSFILQAKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNPSVWIIRFDITL 256

Query: 244 IAI 246
           I I
Sbjct: 257 ITI 259

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score =  147 bits (372), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/243 (35%), Positives = 142/243 (58%), Gaps = 8/243 (3%)

Query: 9   VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTV 68
           +M+ ++    G+  +  A +N+G + +V+IVY N  AA+ +L P   I+ R + RP +T+
Sbjct: 16  LMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAAL-VLAPFALIFER-KVRPKMTL 73

Query: 69  SIICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRV 127
           S++ KI  LG +   + Q   Y+G+  +S T +SAI+++ P+ TFI+A I RMEK+++  
Sbjct: 74  SVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKVNIAE 133

Query: 128 QSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL-----HNELRSPQKNWIIGGLVL 182
             S AK IGT+V + GAL +TLYKGP +    S+ N+     H        NW++G L++
Sbjct: 134 VRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGTLLI 193

Query: 183 AAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTE 242
             G    S  Y++Q+  I+ YP +L  + + C+   +QS  VAL+ ER+P+ W +  D  
Sbjct: 194 LLGCVAWSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVERHPSGWAVGWDAR 253

Query: 243 LIA 245
           L A
Sbjct: 254 LFA 256

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/238 (35%), Positives = 140/238 (58%), Gaps = 5/238 (2%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           MV ++    G   L+KA +NKG S++VL+VY +A A I ++ P  F Y+  + RP +T+ 
Sbjct: 19  MVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATI-VMAPFAF-YFDKKVRPKMTLM 76

Query: 70  IICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQ 128
           I  KI  LGL+   + Q   Y+G+ Y++ T ++A+ ++ PA TF+LA I  +E++ LR  
Sbjct: 77  IFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVKLRCI 136

Query: 129 SSLAKSIGTMVSIAGALTVTLYKGPAL-VSMSSSSNLHNELRSPQKNWIIGGLVLAAGSF 187
            S  K +GT+ ++ GA+ +TL KGP L +  +   + HN   +   + I G +++  G F
Sbjct: 137 RSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHSAIKGAVLVTIGCF 196

Query: 188 FLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDTELI 244
             +   I+Q   +R YP EL  T   C+  TI+ T VAL+ E+ NP++W +  DT+L+
Sbjct: 197 SYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWAIGWDTKLL 254

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 147/245 (60%), Gaps = 11/245 (4%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A E   V  +TL KAA +KG + +  ++YS    +I +LLPS    YR+R+ P L++S
Sbjct: 17  MLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSI-VLLPSHIFSYRSRSLPSLSLS 75

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+CKI  LGL+        ++GI YS+PTL+SAI ++ PA TFILA+I RMEK   + +S
Sbjct: 76  ILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEKASFKEKS 135

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRS-------PQKNWIIGGLVL 182
           S+AK +GT+VS+ GAL V LY GP + + SS      +LR           +WIIGG +L
Sbjct: 136 SVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPP--FPQLRQLLLPLSSSNSDWIIGGCLL 193

Query: 183 AAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDT 241
           A     + + +I+Q  I++ YP     +F   +  +I ++++ ++AE+ NP+ W +  D 
Sbjct: 194 AIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPSIWIIHFDI 253

Query: 242 ELIAI 246
            L+ I
Sbjct: 254 TLVCI 258

Arabidopsis thaliana (taxid: 3702)

>sp|F4IYZ0|WTR21_ARATH WAT1-related protein At3g28080 OS=Arabidopsis thaliana GN=At3g28080 PE=2 SV=1

 Score =  137 bits (345), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/243 (38%), Positives = 145/243 (59%), Gaps = 7/243 (2%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A E   VG STL K A +KG + +  + YS   A++ +L  S F   R+R+ PPL+ S
Sbjct: 18  MLAGETSIVGLSTLFKVATSKGLNIYPFLSYSYLLASLLLLP-SLFFTNRSRSLPPLSAS 76

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+ KI  LG +         +GI YS+PTL+SAI ++ PA TFILA+I RMEK+  + +S
Sbjct: 77  ILSKIGLLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEKVSFKERS 136

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNE-----LRSPQKNWIIGGLVLAA 184
           S+AK +GT++S+ GA  V  Y GP +   SS   L+       L S + +W+IGG +L  
Sbjct: 137 SVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLIGGAILTI 196

Query: 185 GSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDTEL 243
              F+S+ +I+QT I+REYPE    + +  + ++I ++++ L+ E+ NP+ W +  D  L
Sbjct: 197 QGIFVSVSFILQTHIMREYPEAFTVSILYILCISIVTSMIGLVVEKNNPSIWIIHFDITL 256

Query: 244 IAI 246
             I
Sbjct: 257 FTI 259

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
359473431	348	PREDICTED: auxin-induced protein 5NG4-li	0.995	0.712	0.608	9e-80
296086520	350	unnamed protein product [Vitis vinifera]	0.983	0.7	0.587	1e-79
225424734	341	PREDICTED: auxin-induced protein 5NG4-li	0.947	0.692	0.592	1e-77
255581150	348	Auxin-induced protein 5NG4, putative [Ri	0.995	0.712	0.592	4e-74
225424732	351	PREDICTED: auxin-induced protein 5NG4 [V	0.995	0.706	0.541	5e-73
255581154	354	Auxin-induced protein 5NG4, putative [Ri	0.983	0.692	0.572	7e-71
296086528	317	unnamed protein product [Vitis vinifera]	0.867	0.681	0.610	6e-68
356502006	349	PREDICTED: auxin-induced protein 5NG4-li	0.967	0.690	0.574	4e-64
388507570	344	unknown [Medicago truncatula]	0.951	0.688	0.574	6e-64
357485995	344	Auxin-induced protein 5NG4 [Medicago tru	0.951	0.688	0.570	3e-63

>gi|359473431|ref|XP_002265468.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  302 bits (773), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 152/250 (60%), Positives = 194/250 (77%), Gaps = 2/250 (0%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           MWS  + A+M+ +ECLEVG STL+KAAM +G SDFV +VYSNA + + ILL    +++R 
Sbjct: 1   MWSSDLMALMLIIECLEVGLSTLSKAAMRRGMSDFVFVVYSNALS-VPILLFCCLLFHRR 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R  PPLT+SI+C+IF LG ISC  Q  L+VGI YSSPTL+SA+ DL PAFTFILA+ISRM
Sbjct: 60  RFPPPLTLSILCRIFILGFISCSTQMFLFVGIRYSSPTLASAMTDLVPAFTFILAIISRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNE-LRSPQKNWIIGG 179
           EKLDL+  S  AK IGT+VSI GAL VT+YKGP +   SS+  + +E LRS   NW+IGG
Sbjct: 120 EKLDLKAGSCRAKCIGTIVSIIGALIVTIYKGPQIAFASSTFKILDENLRSQISNWVIGG 179

Query: 180 LVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP 239
            +LA  +  ++L Y+VQTSIIR+YP ELM TFIC +FVT+QS++V+LIAER+P++WRLKP
Sbjct: 180 FLLAISAVSIALFYVVQTSIIRDYPAELMLTFICHIFVTMQSSIVSLIAERDPSAWRLKP 239

Query: 240 DTELIAIGCS 249
           D ELIA+G S
Sbjct: 240 DVELIAVGYS 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086520|emb|CBI32109.3| unnamed protein product [Vitis vinifera]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 145/247 (58%), Positives = 196/247 (79%), Gaps = 2/247 (0%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           MWS  +  VM+ +E LE+G +T++KAAM++G S+FV +VYSN FA  F+LL S  +++R 
Sbjct: 1   MWSFKLMLVMLVIESLEMGLNTISKAAMSRGMSNFVFVVYSNTFAIPFLLL-SCLLFHRR 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           +T PPLT SI+C+IF LGLISC +Q  +YVGI YSSPTL+SA+ DL PAFTFILA+I+RM
Sbjct: 60  KTPPPLTTSILCRIFVLGLISCSIQMFMYVGIRYSSPTLASAMTDLVPAFTFILAIITRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMS-SSSNLHNELRSPQKNWIIGG 179
           E LDLRV+SS AKSIGT++SI GALT+T+Y+GP +   S +S+ L+  +  PQ NW+IGG
Sbjct: 120 ENLDLRVRSSRAKSIGTIMSITGALTMTMYEGPPVAFTSLTSTKLNGNVTLPQSNWVIGG 179

Query: 180 LVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP 239
           ++ A  +F L++L++ QTSIIR YP ELM T ICC FV +QS++V+L+AERNP++WRL+P
Sbjct: 180 ILSAIAAFMLAVLFVFQTSIIRAYPAELMVTLICCTFVAMQSSIVSLMAERNPSAWRLRP 239

Query: 240 DTELIAI 246
           D ELIAI
Sbjct: 240 DIELIAI 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424734|ref|XP_002266639.1| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 141/238 (59%), Positives = 191/238 (80%), Gaps = 2/238 (0%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+ +E LE+G +T++KAAM++G S+FV +VYSN FA  F+LL S  +++R +T PPLT S
Sbjct: 1   MLVIESLEMGLNTISKAAMSRGMSNFVFVVYSNTFAIPFLLL-SCLLFHRRKTPPPLTTS 59

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+C+IF LGLISC +Q  +YVGI YSSPTL+SA+ DL PAFTFILA+I+RME LDLRV+S
Sbjct: 60  ILCRIFVLGLISCSIQMFMYVGIRYSSPTLASAMTDLVPAFTFILAIITRMENLDLRVRS 119

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMS-SSSNLHNELRSPQKNWIIGGLVLAAGSFF 188
           S AKSIGT++SI GALT+T+Y+GP +   S +S+ L+  +  PQ NW+IGG++ A  +F 
Sbjct: 120 SRAKSIGTIMSITGALTMTMYEGPPVAFTSLTSTKLNGNVTLPQSNWVIGGILSAIAAFM 179

Query: 189 LSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAI 246
           L++L++ QTSIIR YP ELM T ICC FV +QS++V+L+AERNP++WRL+PD ELIAI
Sbjct: 180 LAVLFVFQTSIIRAYPAELMVTLICCTFVAMQSSIVSLMAERNPSAWRLRPDIELIAI 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581150|ref|XP_002531388.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528981|gb|EEF30972.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 148/250 (59%), Positives = 188/250 (75%), Gaps = 2/250 (0%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           MW  GVTA MVA E  EVG +T+ KAAM++G S FV  VYSNAFA + IL+PS+FI+YR 
Sbjct: 1   MWGTGVTAAMVATEFTEVGINTMMKAAMSRGMSQFVYTVYSNAFA-LLILIPSSFIFYRR 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R RP LTVSII + F LGL+SCCVQ  +  G+ YSSPTLS+A++DLTPAFTF+LA+ISRM
Sbjct: 60  RPRPQLTVSIIFRTFLLGLLSCCVQMFMNTGVKYSSPTLSAAMIDLTPAFTFLLAIISRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSN-LHNELRSPQKNWIIGG 179
           EKLD + QS+ AKSIGT+VS+AGAL VTLYKG  + ++ S SN L+  L      W+ GG
Sbjct: 120 EKLDYKSQSTQAKSIGTIVSVAGALIVTLYKGQPITTLPSESNSLNQPLLLLSSTWVTGG 179

Query: 180 LVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP 239
           +   AG+  L+LLYIVQT I+++ P EL+ T I C FVT+ S++VAL+AE++ +SW LKP
Sbjct: 180 IFCTAGALCLALLYIVQTWILKDCPAELIITCIACFFVTVLSSIVALVAEKDISSWILKP 239

Query: 240 DTELIAIGCS 249
           D ELIA  CS
Sbjct: 240 DIELIATFCS 249

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424732|ref|XP_002266096.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086521|emb|CBI32110.3| unnamed protein product [Vitis vinifera]

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 136/251 (54%), Positives = 197/251 (78%), Gaps = 3/251 (1%)

Query: 1   MWSVGVTAV-MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYR 59
           MWS  +TAV ++ +ECL+VG  TL+KAAM +G SD+V +VYSNA A + +L   + +++R
Sbjct: 1   MWSSELTAVILLTIECLDVGLITLSKAAMRRGMSDYVFVVYSNALA-VPVLFLCSLLFHR 59

Query: 60  NRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISR 119
            R+ PPLT SI+C+IF LGL+SC +Q   ++GIGYSSPTL+SA+ +L PAFT++LA+++R
Sbjct: 60  RRSPPPLTPSILCRIFLLGLVSCSLQMLKFIGIGYSSPTLASAMTNLIPAFTYVLAIVTR 119

Query: 120 MEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS-SNLHNELRSPQKNWIIG 178
           MEKLDL+V+SS AK +GT+VS+AGAL +T+YKGP +   S++ S L++ L  P+ NWIIG
Sbjct: 120 MEKLDLKVKSSRAKCLGTLVSVAGALLITIYKGPGIEFASTTPSMLNHNLLLPRSNWIIG 179

Query: 179 GLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLK 238
           G + AA +F +++L + QTSIIR+YP EL+ T I  +F T+QS++V+LIAER+P++WRL+
Sbjct: 180 GFLTAAAAFMVAVLLVFQTSIIRDYPAELIVTLISHIFATMQSSLVSLIAERDPSAWRLR 239

Query: 239 PDTELIAIGCS 249
            D ELIA+G S
Sbjct: 240 LDMELIAVGYS 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581154|ref|XP_002531390.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528983|gb|EEF30974.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  273 bits (697), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 143/250 (57%), Positives = 185/250 (74%), Gaps = 5/250 (2%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           MW  GVTAVM+ +E LEVG +T+ KAAM+KG S ++L+VYSN  A I +LL S+ I+YR 
Sbjct: 4   MWGSGVTAVMLTLEFLEVGMNTVTKAAMSKGMSHYILVVYSNMIA-ISLLLSSSLIFYRK 62

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R  P +T+SIIC+IF L L+SC  Q   Y+GIGYSSPTL+SA++DLTPAFTFIL + SRM
Sbjct: 63  RIAPAITLSIICRIFVLSLLSCAGQVFTYIGIGYSSPTLASAMIDLTPAFTFILGVFSRM 122

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSN-LHNEL--RSPQKNWII 177
           E+LDLR++S  AKSIGTMV I G L  TLYKG  +  +SSS + LH E+   SP  NW I
Sbjct: 123 ERLDLRIKSGQAKSIGTMVLIIGGLVFTLYKGLPITGISSSGDELHKEMLFLSPS-NWAI 181

Query: 178 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRL 237
           GG  LAA S  L+L++++QT IIR+YP  L+     C FVTI S  V+L+AE++PN+WR+
Sbjct: 182 GGFFLAAHSIILALIFVIQTWIIRDYPSVLITNLFTCTFVTILSASVSLVAEKDPNAWRI 241

Query: 238 KPDTELIAIG 247
           KPD +LI+IG
Sbjct: 242 KPDIQLISIG 251

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086528|emb|CBI32117.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 133/218 (61%), Positives = 169/218 (77%), Gaps = 2/218 (0%)

Query: 33  SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGI 92
           SDFV +VYSNA + + ILL    +++R R  PPLT+SI+C+IF LG ISC  Q  L+VGI
Sbjct: 2   SDFVFVVYSNALS-VPILLFCCLLFHRRRFPPPLTLSILCRIFILGFISCSTQMFLFVGI 60

Query: 93  GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKG 152
            YSSPTL+SA+ DL PAFTFILA+ISRMEKLDL+  S  AK IGT+VSI GAL VT+YKG
Sbjct: 61  RYSSPTLASAMTDLVPAFTFILAIISRMEKLDLKAGSCRAKCIGTIVSIIGALIVTIYKG 120

Query: 153 PALVSMSSSSNLHNE-LRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATF 211
           P +   SS+  + +E LRS   NW+IGG +LA  +  ++L Y+VQTSIIR+YP ELM TF
Sbjct: 121 PQIAFASSTFKILDENLRSQISNWVIGGFLLAISAVSIALFYVVQTSIIRDYPAELMLTF 180

Query: 212 ICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCS 249
           IC +FVT+QS++V+LIAER+P++WRLKPD ELIA+G S
Sbjct: 181 ICHIFVTMQSSIVSLIAERDPSAWRLKPDVELIAVGYS 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502006|ref|XP_003519813.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 142/247 (57%), Positives = 174/247 (70%), Gaps = 6/247 (2%)

Query: 4   VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR 63
           V V+A MVA   LEVG +TL KAA   G S+FV IVYSN F A+F L+PSTF+Y+R R  
Sbjct: 6   VSVSAAMVATLFLEVGLNTLIKAANTNGMSNFVFIVYSN-FLALFFLIPSTFLYHRKRAP 64

Query: 64  PPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKL 123
           PP+  SI+ +IF L  +S  VQT  Y GI YSSPTL+SA+ DL PAFTFI A+ISRME L
Sbjct: 65  PPIPSSILWRIFLLCCLSTAVQTLTYTGIAYSSPTLNSAMSDLVPAFTFIFAIISRMENL 124

Query: 124 DLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL----HNELRSPQKNWIIGG 179
           +L+++SS AK IGT++SIAGAL +TLYKG  L   SS  NL         S Q +WIIGG
Sbjct: 125 NLKLRSSHAKIIGTVISIAGALIITLYKGMPLTG-SSMRNLVLGGSEAYLSVQLDWIIGG 183

Query: 180 LVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP 239
            +LA  S  LS+L+IVQT II++YPEEL+ T ICC  V I ST+VAL AE NP +W LK 
Sbjct: 184 FLLATSSLCLSVLFIVQTWIIKDYPEELVVTTICCSPVVILSTIVALFAEANPRAWILKS 243

Query: 240 DTELIAI 246
           + ELIA+
Sbjct: 244 NKELIAV 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507570|gb|AFK41851.1| unknown [Medicago truncatula]

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 142/247 (57%), Positives = 173/247 (70%), Gaps = 10/247 (4%)

Query: 6   VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP 65
           VTA MVAV+ LEVG +TL KAA N GTS FV   YSN FA  F LLP TF Y+R R  P 
Sbjct: 8   VTATMVAVQFLEVGGNTLIKAATNDGTSIFVFTFYSNLFALCF-LLPLTFFYHRKRAPPS 66

Query: 66  LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDL 125
           ++ SI+C++F L  +S  VQ     GI  SSPTL+SA++DL PAFTFILALISRME L+L
Sbjct: 67  ISSSILCRMFLLSCLSTAVQILTNTGIECSSPTLASAMLDLLPAFTFILALISRMENLNL 126

Query: 126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMS------SSSNLHNELRSPQKNWIIGG 179
           +  SS AK IGT+VSIAGALTVTLYKG  L+S +       +S +H  ++S   +WI+G 
Sbjct: 127 KHHSSQAKIIGTVVSIAGALTVTLYKGIPLISDAFQNIEIGASGIHLSVKS---DWILGA 183

Query: 180 LVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP 239
            +LA  SF LS+LYIVQT IIR+YPEEL+ T ICC  V I S +VALIAE N   W L+P
Sbjct: 184 FLLATASFCLSVLYIVQTWIIRDYPEELVVTSICCSMVVILSAIVALIAEGNSKVWILRP 243

Query: 240 DTELIAI 246
           D EL+A+
Sbjct: 244 DRELVAV 250

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485995|ref|XP_003613285.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355514620|gb|AES96243.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 141/247 (57%), Positives = 172/247 (69%), Gaps = 10/247 (4%)

Query: 6   VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP 65
           VTA MVAV+ LEVG +TL KAA N G S FV   YSN FA  F LLP TF Y+R R  P 
Sbjct: 8   VTATMVAVQFLEVGGNTLIKAATNDGMSIFVFTFYSNLFALCF-LLPLTFFYHRKRAPPS 66

Query: 66  LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDL 125
           ++ SI+C++F L  +S  VQ     GI  SSPTL+SA++DL PAFTFILALISRME L+L
Sbjct: 67  ISSSILCRMFLLSCLSTAVQILTNTGIECSSPTLASAMLDLLPAFTFILALISRMENLNL 126

Query: 126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMS------SSSNLHNELRSPQKNWIIGG 179
           +  SS AK IGT+VSIAGALTVTLYKG  L+S +       +S +H  ++S   +WI+G 
Sbjct: 127 KHHSSQAKIIGTVVSIAGALTVTLYKGIPLISDAFQNIEIGASGIHLSVKS---DWILGA 183

Query: 180 LVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP 239
            +LA  SF LS+LYIVQT IIR+YPEEL+ T ICC  V I S +VALIAE N   W L+P
Sbjct: 184 FLLATASFCLSVLYIVQTWIIRDYPEELVVTSICCSMVVILSAIVALIAEGNSKVWILRP 243

Query: 240 DTELIAI 246
           D EL+A+
Sbjct: 244 DRELVAV 250

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.963	0.653	0.475	5.1e-51
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.911	0.669	0.446	6.4e-44
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.967	0.651	0.441	4.5e-43
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.939	0.674	0.444	5.7e-43
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.971	0.685	0.42	5.2e-42
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.971	0.681	0.396	9.6e-41
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.971	0.672	0.416	3.3e-40
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.971	0.675	0.396	2.9e-39
TAIR|locus:2132447	384	UMAMIT20 "Usually multiple aci	0.943	0.611	0.353	1.2e-35
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.935	0.613	0.357	4e-35

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 117/246 (47%), Positives = 159/246 (64%)

Query:     6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP 65
             VTA+++ +EC  VG +TL KAA  KG S  V IVYS   AA+ +LLPS F  +R+RT PP
Sbjct:    13 VTALVI-MECANVGLNTLFKAATLKGMSFHVFIVYSYGLAAL-LLLPSLFCSFRSRTLPP 70

Query:    66 LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDL 125
             +  SI+ KI  LG+I CC     Y GI YSSPTL+SAI +LTPAFTF+LA++ RME +  
Sbjct:    71 MNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESVSF 130

Query:   126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS-NLHNELRSPQKNWIIGGLVLAA 184
             +  SS+AK +GT+VSI GA  VTLY GP +++ S  S +L ++  +P  NWI+G   LA 
Sbjct:   131 KRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNP--NWILGAGFLAV 188

Query:   185 GSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNP-NSWRLKPDTEL 243
               F + L YIVQT I+REYP E        + V+  + +V L  E N   +W++KP+  L
Sbjct:   189 EYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKIKPNIAL 248

Query:   244 IAIGCS 249
             ++I CS
Sbjct:   249 VSIVCS 254

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 108/242 (44%), Positives = 151/242 (62%)

Query:     6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP 65
             +   MV  E   VG +TL KAA +KG S FV++VYS  F ++ +LLP TF  +R+R+ PP
Sbjct:    13 ILTAMVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSL-LLLPLTFFSFRSRSLPP 71

Query:    66 LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDL 125
             LT SI+C +  LGLI+   Q   Y GI YSSPTLSSA+ ++ PAFTFILA++ RME + L
Sbjct:    72 LTFSILCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISL 131

Query:   126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAG 185
               +SS+AK +GT++SI GAL VTLY GP L  MSS S+           WIIGG +LA  
Sbjct:   132 GKKSSVAKVLGTILSIIGALVVTLYHGPML--MSSHSD-----------WIIGGGLLALQ 178

Query:   186 SFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDTELI 244
                +S+ Y+V    +  YP  ++ T +  V + +    V+L+AE+ NP +W ++ D  LI
Sbjct:   179 YILVSVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLI 238

Query:   245 AI 246
              +
Sbjct:   239 TV 240

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 110/249 (44%), Positives = 153/249 (61%)

Query:     4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR 63
             V  TA MVAVEC+ VGS+TL KAA  +G S +V + Y+   A + +LLP + I+ R++  
Sbjct:    20 VPFTA-MVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATL-VLLPLSLIFGRSKRL 77

Query:    64 PPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKL 123
             P     +   IF L L+          GI YSSPTL+SAI +LTPAFTF LA+I RME++
Sbjct:    78 PSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQI 137

Query:   124 DLRVQSSLAKSIGTMVSIAGALTVTLYKGP------ALVSMSSSSNLHNELRSPQKNWII 177
              LR  ++ AK IGT+VSI+GAL V LYKGP      +L   S + +L+  L S   +WII
Sbjct:   138 VLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWII 197

Query:   178 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRL 237
             GGL+LA     +S+ YI+QT ++  YPEE+   F+  +  T+ S  V L AE++ NS+ L
Sbjct:   198 GGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNSFIL 257

Query:   238 KPDTELIAI 246
             KP   L ++
Sbjct:   258 KPGVSLASV 266

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 108/243 (44%), Positives = 151/243 (62%)

Query:     4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR 63
             V  TA M+A+EC  VGSS L KAA  +G S +V + Y+   A + +LL S  I+ R+R+ 
Sbjct:    16 VPFTA-MIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLS-LIFGRSRSL 73

Query:    64 PPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKL 123
             P    S+  KIF L L+    +     GI YSSPTLSSAI +LTPAFTFILA+  RME++
Sbjct:    74 PTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQV 133

Query:   124 DLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLA 183
              LR  ++ AK IGT+VSI+GAL + LYKGP L+  +S ++        + +WIIGGL+L 
Sbjct:   134 MLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSF-------ESSWIIGGLLLG 186

Query:   184 AGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTEL 243
                  LS+ +I+QT I+  YPEE+   F   +  T+ S  V L+ E++ NSW+LKP   L
Sbjct:   187 LQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLKPGFSL 246

Query:   244 IAI 246
              ++
Sbjct:   247 ASV 249

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 105/250 (42%), Positives = 155/250 (62%)

Query:     3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62
             +V +TA M+A E   VG STL K A +KG + +  + YS   A++ +LLPS F   R+R+
Sbjct:    12 AVFLTA-MLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASL-LLLPSLFFTDRSRS 69

Query:    63 RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122
              PPL++SI+ KI  LGL+        Y+GI YSSPTL+SAI ++TPA TFILA+I RMEK
Sbjct:    70 LPPLSLSILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEK 129

Query:   123 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS-----NLHNELRSPQKNWII 177
             +  + +SS+AK +GT++S+ GAL V LY GP +   SS        L   L S   +W+I
Sbjct:   130 VSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLI 189

Query:   178 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSWR 236
             GG +L     F+S+ +I+Q  I+  YP     +F+  V V+I ++++ L+ E+N P+ W 
Sbjct:   190 GGALLTIRDIFVSVSFILQAKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNPSVWI 249

Query:   237 LKPDTELIAI 246
             ++ D  LI I
Sbjct:   250 IRFDITLITI 259

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 99/250 (39%), Positives = 152/250 (60%)

Query:     3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62
             +V +TA M+A E   V  +TL KAA +KG + +  ++YS    +I +LLPS    YR+R+
Sbjct:    11 AVLLTA-MLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSI-VLLPSHIFSYRSRS 68

Query:    63 RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122
              P L++SI+CKI  LGL+        ++GI YS+PTL+SAI ++ PA TFILA+I RMEK
Sbjct:    69 LPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEK 128

Query:   123 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS-----NLHNELRSPQKNWII 177
                + +SS+AK +GT+VS+ GAL V LY GP + + SS        L   L S   +WII
Sbjct:   129 ASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWII 188

Query:   178 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSWR 236
             GG +LA     + + +I+Q  I++ YP     +F   +  +I ++++ ++AE+N P+ W 
Sbjct:   189 GGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPSIWI 248

Query:   237 LKPDTELIAI 246
             +  D  L+ I
Sbjct:   249 IHFDITLVCI 258

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 104/250 (41%), Positives = 151/250 (60%)

Query:     3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62
             +V +TA++V VE   VG STL K A +KG + +  + YS   A++ +LLPS F   R+ +
Sbjct:    15 AVFLTAMLV-VETSVVGISTLFKFATSKGLNIYPFLGYSYLLASL-LLLPSLFFTNRSSS 72

Query:    63 RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122
              PPL+VSI+ KI  LG +        Y+GI YSSPTL+SAI ++TPA TFILA+I RMEK
Sbjct:    73 LPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEK 132

Query:   123 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS--NLHN---ELRSPQKNWII 177
             +  + +SSLAK +GT++S+ GAL V  Y GP +   SS    N       L S   +W+I
Sbjct:   133 VSFKERSSLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSDWLI 192

Query:   178 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSWR 236
             GG +L     F+S+ +I+Q  I+  YP     +F+  V V+I ++ + L+ E+N P+ W 
Sbjct:   193 GGALLTMQGIFVSVSFILQAHIMSVYPAAFRVSFLYTVCVSIVTSTIGLVVEKNNPSVWI 252

Query:   237 LKPDTELIAI 246
             +  D  LI I
Sbjct:   253 IHFDITLITI 262

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 99/250 (39%), Positives = 152/250 (60%)

Query:     3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62
             +V +TA M+A E   VG STL K A +KG + +  + YS   A++ +LLPS F   R+R+
Sbjct:    12 AVFLTA-MLAGETSIVGLSTLFKVATSKGLNIYPFLSYSYLLASL-LLLPSLFFTNRSRS 69

Query:    63 RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122
              PPL+ SI+ KI  LG +         +GI YS+PTL+SAI ++ PA TFILA+I RMEK
Sbjct:    70 LPPLSASILSKIGLLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEK 129

Query:   123 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSP-----QKNWII 177
             +  + +SS+AK +GT++S+ GA  V  Y GP +   SS   L+    SP     + +W+I
Sbjct:   130 VSFKERSSVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLI 189

Query:   178 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSWR 236
             GG +L     F+S+ +I+QT I+REYPE    + +  + ++I ++++ L+ E+N P+ W 
Sbjct:   190 GGAILTIQGIFVSVSFILQTHIMREYPEAFTVSILYILCISIVTSMIGLVVEKNNPSIWI 249

Query:   237 LKPDTELIAI 246
             +  D  L  I
Sbjct:   250 IHFDITLFTI 259

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 86/243 (35%), Positives = 142/243 (58%)

Query:     9 VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTV 68
             +M+ ++    G+  +  A +N+G + +V+IVY N  AA+ +L P   I+ R + RP +T+
Sbjct:    16 LMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAAL-VLAPFALIFER-KVRPKMTL 73

Query:    69 SIICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRV 127
             S++ KI  LG +   + Q   Y+G+  +S T +SAI+++ P+ TFI+A I RMEK+++  
Sbjct:    74 SVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKVNIAE 133

Query:   128 QSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL-----HNELRSPQKNWIIGGLVL 182
               S AK IGT+V + GAL +TLYKGP +    S+ N+     H        NW++G L++
Sbjct:   134 VRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGTLLI 193

Query:   183 AAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTE 242
               G    S  Y++Q+  I+ YP +L  + + C+   +QS  VAL+ ER+P+ W +  D  
Sbjct:   194 LLGCVAWSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVERHPSGWAVGWDAR 253

Query:   243 LIA 245
             L A
Sbjct:   254 LFA 256

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 85/238 (35%), Positives = 140/238 (58%)

Query:    10 MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
             MV ++    G   L+KA +NKG S++VL+VY +A A I ++ P  F Y+  + RP +T+ 
Sbjct:    19 MVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATI-VMAPFAF-YFDKKVRPKMTLM 76

Query:    70 IICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQ 128
             I  KI  LGL+   + Q   Y+G+ Y++ T ++A+ ++ PA TF+LA I  +E++ LR  
Sbjct:    77 IFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVKLRCI 136

Query:   129 SSLAKSIGTMVSIAGALTVTLYKGPAL-VSMSSSSNLHNELRSPQKNWIIGGLVLAAGSF 187
              S  K +GT+ ++ GA+ +TL KGP L +  +   + HN   +   + I G +++  G F
Sbjct:   137 RSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHSAIKGAVLVTIGCF 196

Query:   188 FLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDTELI 244
               +   I+Q   +R YP EL  T   C+  TI+ T VAL+ E+ NP++W +  DT+L+
Sbjct:   197 SYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWAIGWDTKLL 254

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	2e-50

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  168 bits (426), Expect = 2e-50
 Identities = 101/243 (41%), Positives = 149/243 (61%), Gaps = 7/243 (2%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A E   VG STL K A +KG + +  + YS   A++ +LLPS F   R+R+ PPL+VS
Sbjct: 18  MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASL-LLLPSLFFTNRSRSLPPLSVS 76

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+ KI  LG +        Y+GI YS+PTL+SAI ++TPA TFILA+I RMEK+  + +S
Sbjct: 77  ILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERS 136

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSP-----QKNWIIGGLVLAA 184
           S+AK +GT++S+ GAL V  Y GP +   SS   L+    SP       +W+IGG +L  
Sbjct: 137 SVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTI 196

Query: 185 GSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDTEL 243
              F+S+ +I+Q  I+ EYP     +F+  V V+I ++++ L+ E+ NP+ W +  D  L
Sbjct: 197 QGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITL 256

Query: 244 IAI 246
           I I
Sbjct: 257 ITI 259

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
PLN00411	358	nodulin MtN21 family protein; Provisional	99.96
PRK11272	292	putative DMT superfamily transporter inner membran	99.89
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.88
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.86
PRK11689	295	aromatic amino acid exporter; Provisional	99.86
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.86
PRK15430	296	putative chloramphenical resistance permease RarD;	99.85
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.84
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.81
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.78
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.76
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.72
COG2510	140	Predicted membrane protein [Function unknown]	99.64
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.62
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.58
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.52
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.47
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.43
COG2962	293	RarD Predicted permeases [General function predict	99.39
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.34
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.26
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.26
PRK11272	292	putative DMT superfamily transporter inner membran	99.24
KOG2765	416	consensus Predicted membrane protein [Function unk	99.2
PLN00411	358	nodulin MtN21 family protein; Provisional	99.19
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.18
PRK11689	295	aromatic amino acid exporter; Provisional	99.16
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.04
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.02
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.97
KOG2766	336	consensus Predicted membrane protein [Function unk	98.95
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.82
PRK15430	296	putative chloramphenical resistance permease RarD;	98.8
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.8
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.79
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.75
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.75
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.68
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.62
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.55
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.43
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.34
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.32
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.31
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.31
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.2
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.01
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	97.86
PRK13499	345	rhamnose-proton symporter; Provisional	97.74
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.73
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.72
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.7
COG2962	293	RarD Predicted permeases [General function predict	97.41
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.22
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.2
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.12
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.11
KOG1580	337	consensus UDP-galactose transporter related protei	97.08
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	97.08
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.03
KOG2765	416	consensus Predicted membrane protein [Function unk	97.02
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.01
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	96.96
KOG1581	327	consensus UDP-galactose transporter related protei	96.93
COG2076	106	EmrE Membrane transporters of cations and cationic	96.84
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.76
PRK11431	105	multidrug efflux system protein; Provisional	96.73
PRK13499	345	rhamnose-proton symporter; Provisional	96.61
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.58
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.95
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	95.91
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	95.49
KOG1580	337	consensus UDP-galactose transporter related protei	95.02
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.71
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	94.65
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	94.29
KOG1581	327	consensus UDP-galactose transporter related protei	94.23
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	93.98
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	93.84
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	93.46
KOG1582	367	consensus UDP-galactose transporter related protei	90.55
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	90.41
KOG1443	349	consensus Predicted integral membrane protein [Fun	90.23
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	89.95
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	87.48
KOG3912	372	consensus Predicted integral membrane protein [Gen	87.43
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	86.08
KOG4831	125	consensus Unnamed protein [Function unknown]	82.25
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	82.14

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.96  E-value=3.5e-28  Score=218.90  Aligned_cols=229  Identities=39%  Similarity=0.649  Sum_probs=182.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH
Q 025675            2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS   81 (249)
Q Consensus         2 ~~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (249)
                      |+.++++.|+.+++.+++..++.|.+++.|++|..+.++|+.+|+++ ++++.+.++|++++++.+++++..+.+.|+++
T Consensus        10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~-Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g   88 (358)
T PLN00411         10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLL-LLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG   88 (358)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHH-HHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999 88887765543333556788888888899988


Q ss_pred             HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHH------hhcccceeeccccceeehHHHhhhhhhhhhhccCCcc
Q 025675           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALIS------RMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPAL  155 (249)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~------~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~  155 (249)
                      +.++.+++.|++|+++++++++.++.|+++.++++++      ++||++++      +++|++++++|+.++...+++..
T Consensus        89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~  162 (358)
T PLN00411         89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRV  162 (358)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCccc
Confidence            6677799999999999999999999999999999999      57777777      99999999999998875444321


Q ss_pred             cccCC-C---CCCC-CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 025675          156 VSMSS-S---SNLH-NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER  230 (249)
Q Consensus       156 ~~~~~-~---~~~~-~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  230 (249)
                      ...++ +   .+++ +++.....+...|+++++.++++||+|++++|+..+++|++...++|++.++++...+.....++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~  242 (358)
T PLN00411        163 FVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEK  242 (358)
T ss_pred             ccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence            00000 0   0000 01112223456799999999999999999999999999766678889999999888888777664


Q ss_pred             C-CCCccc
Q 025675          231 N-PNSWRL  237 (249)
Q Consensus       231 ~-~~~~~~  237 (249)
                      + ...|..
T Consensus       243 ~~~~~~~~  250 (358)
T PLN00411        243 NNPSVWII  250 (358)
T ss_pred             CCccccee
Confidence            3 444543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.89  E-value=2.6e-21  Score=170.12  Aligned_cols=188  Identities=12%  Similarity=0.099  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 025675            8 AVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQT   86 (249)
Q Consensus         8 ~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~   86 (249)
                      +..+...++||.++++.|.+.++ +||.+++++|+.+++++ ++++...+ | .+  +.+++++......|.++ ..++.
T Consensus        11 ~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~-ll~~~~~~-~-~~--~~~~~~~~~~~~~g~~~~~~~~~   84 (292)
T PRK11272         11 GALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGIL-LLAFLLLR-G-HP--LPTLRQWLNAALIGLLLLAVGNG   84 (292)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHH-HHHHHHHh-C-CC--CCcHHHHHHHHHHHHHHHHHHHH
Confidence            56788899999999999998885 99999999999999998 87775432 2 22  23456777778888887 77888


Q ss_pred             HHHHhh-cccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCC
Q 025675           87 CLYVGI-GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH  165 (249)
Q Consensus        87 ~~~~gl-~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~  165 (249)
                      +++.+. +++++++++++.++.|+++.+++.+ +|||++++      +++|++++++|+.++.. ++.            
T Consensus        85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~-~~~------------  144 (292)
T PRK11272         85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNS-GGN------------  144 (292)
T ss_pred             HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhc-Ccc------------
Confidence            999999 9999999999999999999999986 69999999      99999999999987652 111            


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 025675          166 NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAE  229 (249)
Q Consensus       166 ~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~  229 (249)
                            .+....|++++++++++||.|.+..||..++.  +...+.+++..+++.+.+.....+
T Consensus       145 ------~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  200 (292)
T PRK11272        145 ------LSGNPWGAILILIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSG  200 (292)
T ss_pred             ------cccchHHHHHHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcC
Confidence                  11234799999999999999999999976543  356778999999998888776554

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.88  E-value=3.3e-21  Score=169.99  Aligned_cols=190  Identities=17%  Similarity=0.187  Sum_probs=143.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 025675            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC   83 (249)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (249)
                      +..+..++++++||.++++.|.+.++ +||..+.++|+.++++. ++++.  + +    ++.+++   .....|+.. ..
T Consensus         4 ~~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~-l~~~~--~-~----~~~~~~---~~~~~g~~~~~~   71 (299)
T PRK11453          4 KDGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFP-AIFFV--A-R----PKVPLN---LLLGYGLTISFG   71 (299)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHH-HHHHh--c-C----CCCchH---HHHHHHHHHHHH
Confidence            44566889999999999999999886 99999999999998877 65543  1 2    122332   234446655 56


Q ss_pred             HHHHHHHhhcc-cCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCC
Q 025675           84 VQTCLYVGIGY-SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS  162 (249)
Q Consensus        84 ~~~~~~~gl~~-~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~  162 (249)
                      .+.+++.++++ .++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++.. ++.+        
T Consensus        72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~~~~--------  136 (299)
T PRK11453         72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-DSLN--------  136 (299)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-ccCC--------
Confidence            66678899998 58899999999999999999999999999999      99999999999988762 1110        


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCch--hHHHHHHHHHHHHHHHHHHHHhh
Q 025675          163 NLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEE--LMATFICCVFVTIQSTVVALIAE  229 (249)
Q Consensus       163 ~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~--~~~~~~~~~~g~i~~~~~~~~~~  229 (249)
                              .......|+++++.++++|+.|++++||..++.+++  ...+.+++.++.+.........+
T Consensus       137 --------~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (299)
T PRK11453        137 --------GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILD  197 (299)
T ss_pred             --------CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence                    112234799999999999999999999987665432  34456666666655554444443

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.86  E-value=1.8e-20  Score=161.24  Aligned_cols=179  Identities=13%  Similarity=0.108  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhccc
Q 025675           17 EVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYS   95 (249)
Q Consensus        17 wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~gl~~~   95 (249)
                      ||.+++..|...+++.||..+.++|.+.+.+. +.+....  |  +    +++++......|.++ .+++.+++.|++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~-l~~~~~~--~--~----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLL-LLPLLRR--R--P----PLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHHHHHh--c--c----CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999887789999999999999887 7665422  2  1    233445677788888 89999999999999


Q ss_pred             CchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCch
Q 025675           96 SPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNW  175 (249)
Q Consensus        96 ~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                      ++++++++.++.|+++.+++.+++|||++++      +++|++++++|+.++.. +++                  .+..
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~~------------------~~~~  126 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DGN------------------LSIN  126 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CCc------------------cccc
Confidence            9999999999999999999999999999999      99999999999988752 111                  1234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHHHHhh
Q 025675          176 IIGGLVLAAGSFFLSLLYIVQTSIIREYPE-ELMATFICCVFVTIQSTVVALIAE  229 (249)
Q Consensus       176 ~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~g~i~~~~~~~~~~  229 (249)
                      ..|+.+++.++++|+.+.+..||..++.++ +...+.+++..+++...+.....+
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  181 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLG  181 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            679999999999999999999999877652 235555788999999888877654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.86  E-value=1.9e-20  Score=164.83  Aligned_cols=181  Identities=14%  Similarity=0.066  Sum_probs=136.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-
Q 025675            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-   81 (249)
Q Consensus         3 ~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-   81 (249)
                      |.+.++.++.++++||.+++..|.+.++ +||..+.++|+.+++++ ++++.   ++++. ++.++   . ....+.++ 
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~-l~~~~---~~~~~-~~~~~---~-~~~~~~l~~   71 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLL-LLLTV---GFPRL-RQFPK---R-YLLAGGLLF   71 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHH-HHHHc---ccccc-ccccH---H-HHHHHhHHH
Confidence            5678889999999999999999999887 99999999999999988 77642   12111 22222   2 23344445 


Q ss_pred             HHHHHHHHHhhc----ccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccc
Q 025675           82 CCVQTCLYVGIG----YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVS  157 (249)
Q Consensus        82 ~~~~~~~~~gl~----~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~  157 (249)
                      +.+..+++.|++    ++++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++... ++....
T Consensus        72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~  144 (295)
T PRK11689         72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSL  144 (295)
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchh
Confidence            677777777775    468889999999999999999999999999999      999999999999887632 110000


Q ss_pred             cCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHH
Q 025675          158 MSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMA  209 (249)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~  209 (249)
                            ++  ...+..+...|+++++.|+++||.|+++.||..++.+ +.+.
T Consensus       145 ------~~--~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~  187 (295)
T PRK11689        145 ------AE--LINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITL  187 (295)
T ss_pred             ------hh--hhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhH
Confidence                  00  0001112356999999999999999999999987765 5543

>TIGR00688 rarD rarD protein

Probab=99.86  E-value=2.8e-20  Score=160.42  Aligned_cols=166  Identities=11%  Similarity=0.046  Sum_probs=132.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccC----CCCCCCHH-HHHHHHHHH
Q 025675            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNR----TRPPLTVS-IICKIFGLG   78 (249)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~----~~~~~~~~-~~~~~~~~g   78 (249)
                      +|+++.+++++++||.++++.|. .++ +||.++.++|+++++++ ++++...++|++    +.++.+++ .+..+...|
T Consensus         1 ~~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   77 (256)
T TIGR00688         1 FKGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPF-MLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG   77 (256)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence            36889999999999999999998 454 99999999999999988 777654433211    10112222 234456667


Q ss_pred             HHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCccccc
Q 025675           79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM  158 (249)
Q Consensus        79 ~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~  158 (249)
                      +....++.++++|++++++++++++.++.|+++.+++++++|||++++      ++.|++++++|++++...++      
T Consensus        78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~------  145 (256)
T TIGR00688        78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG------  145 (256)
T ss_pred             HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC------
Confidence            766889999999999999999999999999999999999999999999      99999999999988752111      


Q ss_pred             CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025675          159 SSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIRE  202 (249)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~  202 (249)
                                    +..    .++++++++||.|.+..|+..++
T Consensus       146 --------------~~~----~~~l~aa~~~a~~~i~~~~~~~~  171 (256)
T TIGR00688       146 --------------SLP----WEALVLAFSFTAYGLIRKALKNT  171 (256)
T ss_pred             --------------Cch----HHHHHHHHHHHHHHHHHhhcCCC
Confidence                          111    35788999999999999987543

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.85  E-value=3.9e-20  Score=162.94  Aligned_cols=185  Identities=12%  Similarity=0.022  Sum_probs=139.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCC-C-CCCHHHHHHHHHHHH
Q 025675            2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR-P-PLTVSIICKIFGLGL   79 (249)
Q Consensus         2 ~~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~-~-~~~~~~~~~~~~~g~   79 (249)
                      ++.|+.+++++++++||.+++..|.. ++ +||.++.++|++++.++ ++++...+++..+. + ..+++++.. ...+.
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~-~~~~~~~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   80 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YY-VPADEILTHRVIWSFFF-MVVLMSICRQWSYLKTLIQTPQKIFM-LAVSA   80 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHH-HHHHHHHHccHHHHHHHHcCHHHHHH-HHHHH
Confidence            34588999999999999999999975 44 99999999999999988 77665443221110 0 113444333 33565


Q ss_pred             HH-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCccccc
Q 025675           80 IS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM  158 (249)
Q Consensus        80 ~~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~  158 (249)
                      ++ +.++.++++|++++++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++...++      
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~------  148 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG------  148 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC------
Confidence            66 889999999999999999999999999999999999999999999      99999999999988762111      


Q ss_pred             CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHH
Q 025675          159 SSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-EELMATFICCVFVTIQ  220 (249)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~  220 (249)
                                    +.    ..+.++++++||.|++..||..++.. +....+.+++.++.+.
T Consensus       149 --------------~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~  193 (296)
T PRK15430        149 --------------SL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIY  193 (296)
T ss_pred             --------------Cc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence                          11    14688899999999999888753221 1234445555555544

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.84  E-value=4.9e-19  Score=156.19  Aligned_cols=186  Identities=11%  Similarity=0.085  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025675           15 CLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGY   94 (249)
Q Consensus        15 ~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~   94 (249)
                      ++-....+.-|.++++-.+|..+++.|+.++.+. +.+. +..+.+++ ++.++++++.++..|++++....+.+.|++|
T Consensus        12 ~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~-~~~~-~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~   88 (302)
T TIGR00817        12 FLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLY-CLLS-WSSGLPKR-LKISSALLKLLLPVAIVHTIGHVTSNVSLSK   88 (302)
T ss_pred             HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH-HHHH-HHhCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444578988876467999999999999877 5554 21122222 4567888999999999997888999999999


Q ss_pred             cCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCc
Q 025675           95 SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKN  174 (249)
Q Consensus        95 ~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                      +++++++++.++.|+++.+++++++|||++++      ++.|++++++|+.+..  .++                  .+.
T Consensus        89 ~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~~~------------------~~~  142 (302)
T TIGR00817        89 VAVSFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--DTE------------------LSF  142 (302)
T ss_pred             ccHHHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--CCc------------------ccc
Confidence            99999999999999999999999999999999      9999999999997643  111                  122


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 025675          175 WIIGGLVLAAGSFFLSLLYIVQTSIIR--EYPEELMATFICCVFVTIQSTVVALIAER  230 (249)
Q Consensus       175 ~~~G~~~~l~aa~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  230 (249)
                      ...|++++++|+++|++|+++.||..+  +.+ +.+.+.+++.++++.+.|+....|+
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~  199 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEG  199 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcc
Confidence            356999999999999999999999887  665 6899999999999999999877653

specificities overlap.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.81  E-value=3.8e-18  Score=150.10  Aligned_cols=188  Identities=7%  Similarity=0.002  Sum_probs=147.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHH
Q 025675            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCC   83 (249)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   83 (249)
                      .+++.+++++++.|+.++.+.|.+.++ +||.++.++|+++++++ ++++..  +++   ++.++|++...+..|+....
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~-l~~~~~--~~~---~~~~~~~~~~~~~~g~~~~~   83 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLI-LIAIFK--PWR---LRFAKEQRLPLLFYGVSLGG   83 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHH-HHHHHh--HHh---ccCCHHHHHHHHHHHHHHHH
Confidence            478899999999999999999999987 99999999999999988 776542  121   22355666777788887777


Q ss_pred             HHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCC
Q 025675           84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSN  163 (249)
Q Consensus        84 ~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~  163 (249)
                      .+.++++|++|+|+++++++.++.|+++.+++    +||.+        +..++.++++|+.++.. .+.+         
T Consensus        84 ~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~-~~~~---------  141 (293)
T PRK10532         84 MNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLP-LGQD---------  141 (293)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeee-cCCC---------
Confidence            77889999999999999999999999998876    35443        44667888999987652 1110         


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 025675          164 LHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAE  229 (249)
Q Consensus       164 ~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~  229 (249)
                             .++....|+++.++++++||.|++..||..++.+ +... .++..++++...++....+
T Consensus       142 -------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~  198 (293)
T PRK10532        142 -------VSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQA  198 (293)
T ss_pred             -------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHcc
Confidence                   1122357999999999999999999999987765 5665 5677888888887766543

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.78  E-value=5.6e-17  Score=146.15  Aligned_cols=196  Identities=14%  Similarity=0.118  Sum_probs=151.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCC--CHHHHHHHHHHHHHH
Q 025675            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPL--TVSIICKIFGLGLIS   81 (249)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~   81 (249)
                      +.....+.--.+-.......|.+++. .| |..++.+|++++.+. +.+... .+.+++ ++.  .+++++.++.+|+++
T Consensus        49 ~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~-~~~~~~-~~~~~~-~~~~~~~~~~~~llp~gl~~  124 (350)
T PTZ00343         49 KLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLF-ALLYWA-TGFRKI-PRIKSLKLFLKNFLPQGLCH  124 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHH-HHHHHH-hCCCCC-CCCCCHHHHHHHHHHHHHHH
Confidence            33444444444445566788999987 99 999999999999877 555432 222222 333  234677888999998


Q ss_pred             HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCC
Q 025675           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS  161 (249)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~  161 (249)
                      ...+...+.|+++++++.+.++-+++|+++.+++++++|||++++      ++.++++++.|+.+... ++         
T Consensus       125 ~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~-~~---------  188 (350)
T PTZ00343        125 LFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV-KE---------  188 (350)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec-cc---------
Confidence            444555779999999999999999999999999999999999999      99999999999988652 11         


Q ss_pred             CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC------chhHHHHHHHHHHHHHHHHHHHHhhc
Q 025675          162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP------EELMATFICCVFVTIQSTVVALIAER  230 (249)
Q Consensus       162 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~g~i~~~~~~~~~~~  230 (249)
                                .+....|++++++++++|++++++.||..++.+      ++.+...+++.+|++.++|+....|.
T Consensus       189 ----------~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~  253 (350)
T PTZ00343        189 ----------LHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEG  253 (350)
T ss_pred             ----------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                      112357999999999999999999999876532      24567777799999999999876653

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.76  E-value=9.5e-17  Score=142.71  Aligned_cols=199  Identities=18%  Similarity=0.201  Sum_probs=153.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025675           14 ECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGI   92 (249)
Q Consensus        14 ~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl   92 (249)
                      +++-.++...+....++|++ |..-+++-+..-.++ ..+....+++..+..+..++.+...++++++...++.+...|+
T Consensus        22 sl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~v-y~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~  100 (334)
T PF06027_consen   22 SLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALV-YTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAY  100 (334)
T ss_pred             HHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHH-HhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555666666666655665 666666666666555 5565544332211122223444667778998899999999999


Q ss_pred             cccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCC
Q 025675           93 GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQ  172 (249)
Q Consensus        93 ~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~  172 (249)
                      +||+.+.+.++....-+++.++|++++|||.++.      +++|++++++|++++...|..+.+           +...+
T Consensus       101 ~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~~-----------~~~~~  163 (334)
T PF06027_consen  101 QYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSGS-----------DSSSG  163 (334)
T ss_pred             hcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccccc-----------cCCCC
Confidence            9999999999999999999999999999999999      999999999999888754422110           11234


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhcC
Q 025675          173 KNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN  231 (249)
Q Consensus       173 ~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~  231 (249)
                      .+..+||++++.|+..||++++++++..++.+ +.....+..++|.+...+...++|++
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~  221 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERS  221 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehh
Confidence            56789999999999999999999999999987 68999999999999999988888764

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.72  E-value=3.1e-16  Score=137.09  Aligned_cols=169  Identities=14%  Similarity=0.114  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 025675            7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQT   86 (249)
Q Consensus         7 ~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   86 (249)
                      .++.+.++++|+...+..|...++ .++.  .+++...+++. ++|+...+.++...+..+++.+......++.+..++.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVL-LTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFL   78 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHH-HHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence            467789999999999999976655 3453  47777777777 7776654321111122333333334444444489999


Q ss_pred             HHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCC
Q 025675           87 CLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHN  166 (249)
Q Consensus        87 ~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~  166 (249)
                      +++.|++++++++++.+.++.|+++.+++++++|||++++      +++|+.+++.|+.++.. ++.             
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~-~~~-------------  138 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL-SRF-------------  138 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc-ccc-------------
Confidence            9999999999999999999999999999999999999999      99999999999987762 111             


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 025675          167 ELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP  204 (249)
Q Consensus       167 ~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~  204 (249)
                           ......|+.+.++++++|+.|+++.|+..++.+
T Consensus       139 -----~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~  171 (281)
T TIGR03340       139 -----AQHRRKAYAWALAAALGTAIYSLSDKAAALGVP  171 (281)
T ss_pred             -----cccchhHHHHHHHHHHHHHHhhhhccccccchh
Confidence                 011235888999999999999999888755443

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.64  E-value=1.7e-15  Score=114.59  Aligned_cols=136  Identities=12%  Similarity=0.088  Sum_probs=120.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHH
Q 025675            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV   84 (249)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   84 (249)
                      ...++.++++++||...++.|..+++ +||..-++.|.....+. +..+....++.......+.|.|..+.+-|+.+...
T Consensus         3 ~~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~-l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gls   80 (140)
T COG2510           3 AAIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIF-LLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLS   80 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHH-HHHHHHhcCceecccccCcceehhhhHHHHHHHHH
Confidence            45678899999999999999999986 99999999999999988 77776665553332345778888888899888999


Q ss_pred             HHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675           85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (249)
Q Consensus        85 ~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~  148 (249)
                      +.+||.+++...++....+..+.|+++.++|+++++||++.+      +++|+.+..+|++++.
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs  138 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence            999999999999999999999999999999999999999999      9999999999998764

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.62  E-value=7.2e-14  Score=121.00  Aligned_cols=183  Identities=20%  Similarity=0.214  Sum_probs=137.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-H
Q 025675            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-C   82 (249)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~   82 (249)
                      .......+...+.|+.+....|...+...++....+.|...+.+. ..+..... +... .+..++ +.+....+.++ .
T Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~~~~~   81 (292)
T COG0697           6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALL-LLPLLLLE-PRGL-RPALRP-WLLLLLLALLGLA   81 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHH-HHHHHHhh-cccc-cccccc-hHHHHHHHHHHHH
Confidence            456677888889999999999998875356677777799988876 55443221 1111 111111 23455556666 8


Q ss_pred             HHHHHHHHhhcccCchhhhhcccchHHHHHHHHH-HHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCC
Q 025675           83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL-ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS  161 (249)
Q Consensus        83 ~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~-~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~  161 (249)
                      ..+.+++.+++++++++++.+.++.|+++.+++. ++++||++++      ++.|+.+++.|+.++...++..       
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~~-------  148 (292)
T COG0697          82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGGG-------  148 (292)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCcc-------
Confidence            9999999999999999999999999999999997 6779999999      9999999999998876322110       


Q ss_pred             CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHH-HHHH
Q 025675          162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATF-ICCV  215 (249)
Q Consensus       162 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~  215 (249)
                               ... ...|+.+++.++++|+++.+..|+.. +.+ +..... ++..
T Consensus       149 ---------~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~  191 (292)
T COG0697         149 ---------GIL-SLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL  191 (292)
T ss_pred             ---------hhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH
Confidence                     011 56899999999999999999999887 554 455555 4444

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.58  E-value=4.9e-15  Score=112.77  Aligned_cols=124  Identities=22%  Similarity=0.262  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 025675           15 CLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIG   93 (249)
Q Consensus        15 ~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~gl~   93 (249)
                      ++||.+.++.|...++ .||....++|+..+.+. +.... ..+++.. ++.+.+++......|.++ ..++.+++.|++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGIL-LILLL-ILGRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHHH-HHHHH-hhccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            4699999999999987 99999999999999853 33322 2333222 456667778888889887 999999999999


Q ss_pred             ccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675           94 YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (249)
Q Consensus        94 ~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~  148 (249)
                      ++++++++.+.+++|+++.+++++++||+++++      +++|+.+.+.|+.++.
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999      9999999999998753

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.52  E-value=5.1e-13  Score=117.49  Aligned_cols=181  Identities=13%  Similarity=0.055  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 025675            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (249)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (249)
                      +++..++++++||...+..|...  |.++.++.  |..++.++ +..+....++ .  ++..++.+..-+..|+.....+
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~-~~~~~~~~~~-~--~~~~~~~~~~g~l~G~~w~ig~   73 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALI-LSIAIAIFVL-P--EFWALSIFLVGLLSGAFWALGQ   73 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHH-HHHHHHHHhC-C--cccccHHHHHHHHHHHHHHhhh
Confidence            46788999999999999999865  58888776  78788877 6655544332 1  1122333343444444457788


Q ss_pred             HHHHHhhcccCchhhhhccc-chHHHHHHHHHHHhhcccceeeccccce----eehHHHhhhhhhhhhhccCCcccccCC
Q 025675           86 TCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAK----SIGTMVSIAGALTVTLYKGPALVSMSS  160 (249)
Q Consensus        86 ~~~~~gl~~~~a~~a~ii~~-~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~----~~g~~l~~~Gv~li~~~~~~~~~~~~~  160 (249)
                      .+|+.++++++.+.+..+.+ ..|+++.+.+.+++|||.+.+      +    ++|+++.++|+.++...++++.     
T Consensus        74 ~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~~-----  142 (290)
T TIGR00776        74 INQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKSA-----  142 (290)
T ss_pred             hhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEecccccc-----
Confidence            99999999999999999988 889999999999999999999      8    9999999999887753322110     


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHH
Q 025675          161 SSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCV  215 (249)
Q Consensus       161 ~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~  215 (249)
                            ++.+ ..+...|..+++.++++|+.|.+..|+.  +++ |.+.++.+..
T Consensus       143 ------~~~~-~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~  187 (290)
T TIGR00776       143 ------GIKS-EFNFKKGILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAI  187 (290)
T ss_pred             ------cccc-ccchhhHHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHH
Confidence                  0000 0223579999999999999999998865  354 6787544444

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.47  E-value=1.9e-14  Score=121.67  Aligned_cols=202  Identities=14%  Similarity=0.182  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 025675            7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQT   86 (249)
Q Consensus         7 ~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   86 (249)
                      ..+..++ ..+....+..+...+  .||.+...-|+++-.++ ..|...+......-|+..+   +++++.|+.|+....
T Consensus        40 l~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mli-t~pcliy~~~~v~gp~g~R---~~LiLRg~mG~tgvm  112 (346)
T KOG4510|consen   40 LLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLI-TYPCLIYYMQPVIGPEGKR---KWLILRGFMGFTGVM  112 (346)
T ss_pred             ceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhh-hheEEEEEeeeeecCCCcE---EEEEeehhhhhhHHH
Confidence            3444444 444455555554454  59999999997776666 5555444322221133343   457888999977777


Q ss_pred             HHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCC
Q 025675           87 CLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHN  166 (249)
Q Consensus        87 ~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~  166 (249)
                      ..|++++|.+.++|++++++.|+++++++|.++|||.+..      +..|..+.+.|+++++.  +|.+  +++..  +.
T Consensus       113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIvR--PpFl--FG~~t--~g  180 (346)
T KOG4510|consen  113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIVR--PPFL--FGDTT--EG  180 (346)
T ss_pred             HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEec--CCcc--cCCCc--cc
Confidence            8899999999999999999999999999999999999988      99999999999999873  2322  11111  11


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHh
Q 025675          167 ELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIA  228 (249)
Q Consensus       167 ~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~  228 (249)
                      +|.+.-+....|...++.++++-|..+++.|+..|+.+. .....|..+.+.+...+.....
T Consensus       181 ~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~-~msvsyf~~i~lV~s~I~~~~i  241 (346)
T KOG4510|consen  181 EDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHA-IMSVSYFSLITLVVSLIGCASI  241 (346)
T ss_pred             cccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccE-EEEehHHHHHHHHHHHHHHhhc
Confidence            122222445678999999999999999999999998874 6667777888887777664444

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.43  E-value=3e-12  Score=110.06  Aligned_cols=130  Identities=20%  Similarity=0.196  Sum_probs=111.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH
Q 025675            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTS--DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS   81 (249)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~--p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (249)
                      .++....+++++.|+.+....|...++ .|  +.....+|+.++.++ +++.....++.   +..+.+++...+..|+++
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALL-LLPFAWFLGPN---PQALSLQWGALLYLGLIG  201 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHH-HHHHHHhcCCC---CCcchHHHHHHHHHHHHH
Confidence            467889999999999999999998865 66  455666889999988 88876654332   233566777788888888


Q ss_pred             -HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhh
Q 025675           82 -CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGA  144 (249)
Q Consensus        82 -~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv  144 (249)
                       ..++.+|+.++++++++.++.+.+++|+++.++++++++||++.+      +++|+.+.+.|+
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence             899999999999999999999999999999999999999999999      999999999886

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.39  E-value=4e-11  Score=103.05  Aligned_cols=193  Identities=11%  Similarity=0.001  Sum_probs=150.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCC--CCCHHHHHHHHHHHHHH
Q 025675            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP--PLTVSIICKIFGLGLIS   81 (249)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~   81 (249)
                      .++++..+.+.++||......|.. +. +|+.++...|..-+... ++.+....++.+...  ..+.|.+..+...+++.
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~-~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li   82 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPF-MLALLFLLRQWRELKQLLKQPKTLLMLALTALLI   82 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            589999999999999999999975 44 89999999999999998 766665544322111  23444555666666666


Q ss_pred             HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCC
Q 025675           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS  161 (249)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~  161 (249)
                      ..++..|.++.++-..-++|+=.+..|++.++++.+++|||+++.      |++++.++.+||...+...|.        
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g~--------  148 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLGS--------  148 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcCC--------
Confidence            899999999999999999999999999999999999999999999      999999999999887754331        


Q ss_pred             CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 025675          162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNP  232 (249)
Q Consensus       162 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~  232 (249)
                                 .. ..    .+.=+++|++|..+ ||.. +.+ +.+-.+..++.-....+.+....+.+.
T Consensus       149 -----------lp-wv----al~la~sf~~Ygl~-RK~~-~v~-a~~g~~lE~l~l~p~al~yl~~l~~~~  200 (293)
T COG2962         149 -----------LP-WV----ALALALSFGLYGLL-RKKL-KVD-ALTGLTLETLLLLPVALIYLLFLADSG  200 (293)
T ss_pred             -----------Cc-HH----HHHHHHHHHHHHHH-HHhc-CCc-hHHhHHHHHHHHhHHHHHHHHHHhcCc
Confidence                       11 22    45567899999998 4433 334 477777888887777777766665443

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.34  E-value=1e-10  Score=98.54  Aligned_cols=186  Identities=12%  Similarity=0.056  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 025675            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (249)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (249)
                      +++.++.+++.-=....++|..... ++|.-.+.+|..+++++ ++++...    ++ .|.+++++......|..-...+
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLI-ll~l~RP----wr-~r~~~~~~~~~~~yGvsLg~MN   85 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALI-LLALFRP----WR-RRLSKPQRLALLAYGVSLGGMN   85 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHH-HHHHhhH----HH-hccChhhhHHHHHHHHHHHHHH
Confidence            5777777777777778889998887 99999999999999998 7776533    22 4566667788888888777888


Q ss_pred             HHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCC
Q 025675           86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH  165 (249)
Q Consensus        86 ~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~  165 (249)
                      .+||.+++.+|.+.+..+-++.|+.+.+++    .+|.  +      ..+-+.+.+.|+.++.-. +.            
T Consensus        86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~--~------d~vwvaLAvlGi~lL~p~-~~------------  140 (292)
T COG5006          86 LLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRL--R------DFVWVALAVLGIWLLLPL-GQ------------  140 (292)
T ss_pred             HHHHHHHHhccchhhhhhhhccHHHHHHHh----ccch--h------hHHHHHHHHHHHHhheec-cC------------
Confidence            999999999999999999999999886643    2222  2      556677888998877521 21            


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHh
Q 025675          166 NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIA  228 (249)
Q Consensus       166 ~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~  228 (249)
                          +...-+..|..+++.++.+|+.|.+..||..+..+. -+-+..-+..+++..+|+....
T Consensus       141 ----~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g-~~g~a~gm~vAaviv~Pig~~~  198 (292)
T COG5006         141 ----SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEHG-TAGVAVGMLVAALIVLPIGAAQ  198 (292)
T ss_pred             ----CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCC-chHHHHHHHHHHHHHhhhhhhh
Confidence                112335689999999999999999999999876664 6778899999999999998754

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.26  E-value=1.4e-10  Score=102.00  Aligned_cols=134  Identities=13%  Similarity=0.074  Sum_probs=109.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 025675            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC   83 (249)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (249)
                      .+.++.+++++.|+.+.+..|...++ .+|...... ..++++. +.++......  . ...++..+...+.+|+++ .+
T Consensus       148 ~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~~-~~~~~~~-l~~~~~~~~~--~-~~~~~~~~~~~l~lgv~~t~~  221 (293)
T PRK10532        148 TGAALALGAGACWAIYILSGQRAGAE-HGPATVAIG-SLIAALI-FVPIGALQAG--E-ALWHWSILPLGLAVAILSTAL  221 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHH-HHHHHHH-HHHHHHHccC--c-ccCCHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999998665 788777544 4566666 6676554322  1 234555555567889988 89


Q ss_pred             HHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhc
Q 025675           84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY  150 (249)
Q Consensus        84 ~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~  150 (249)
                      ++.+|+++++++++++++++.+++|+++.++++++++|+++..      +++|.++.+.|++.....
T Consensus       222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999      999999999999887643

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.26  E-value=8.3e-12  Score=94.64  Aligned_cols=103  Identities=22%  Similarity=0.350  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHhccCC-CCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHH
Q 025675           39 VYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL  116 (249)
Q Consensus        39 ~~R~~~a~i~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~  116 (249)
                      .+|+..+.+. +..+...++|.+. .+..+++.+.+....|+++ ..++.++++|+++++ +.++.+.++.|+++.++++
T Consensus         2 a~r~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~   79 (113)
T PF13536_consen    2 AFRYLFSVLF-LLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW   79 (113)
T ss_pred             HHHHHHHHHH-HHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence            5899999998 7777766433211 0222334456667778888 699999999999999 5888999999999999999


Q ss_pred             HHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675          117 ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (249)
Q Consensus       117 ~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~  149 (249)
                      +++|||++.+      +++|++++++|++++..
T Consensus        80 ~~~~er~~~~------~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   80 LFFKERLSPR------RWLAILLILIGVILIAW  106 (113)
T ss_pred             HHhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence            9999999999      99999999999998874

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.24  E-value=1.2e-10  Score=102.35  Aligned_cols=135  Identities=13%  Similarity=0.020  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 025675            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC   83 (249)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (249)
                      .+.++.++++++|+.+....|...+  -++.....++..++++. +.+.....+.... ...+.+.+..+...|+++ ..
T Consensus       150 ~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~i~~l~i~~s~~  225 (292)
T PRK11272        150 WGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVV-LLIASLLSGERLT-ALPTLSGFLALGYLAVFGSII  225 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHH-HHHHHHHcCCccc-ccCCHHHHHHHHHHHHHHHHH
Confidence            5778899999999999999998643  34566778898888888 7777654332111 123556778888889988 89


Q ss_pred             HHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675           84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (249)
Q Consensus        84 ~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~  149 (249)
                      ++.+|+.++++.++++++++.+++|+++.++++++++|+++..      +++|.++.+.|+.+...
T Consensus       226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999      99999999999987753

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.20  E-value=2e-10  Score=101.53  Aligned_cols=137  Identities=17%  Similarity=0.183  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCC
Q 025675           74 IFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGP  153 (249)
Q Consensus        74 ~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~  153 (249)
                      .+....+.+.+++.++.++.+|+++..+++.++.-+|+..++.++..||+++.      |.+++.++++|+++++..+..
T Consensus       162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~  235 (416)
T KOG2765|consen  162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSK  235 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccc
Confidence            33344445899999999999999999999999999999999999999999999      999999999999988743221


Q ss_pred             cccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhH---HHHHHHHHHHHHHHHHHHHh
Q 025675          154 ALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELM---ATFICCVFVTIQSTVVALIA  228 (249)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~---~~~~~~~~g~i~~~~~~~~~  228 (249)
                      +.  .          ........+|+++++++|+.||+|+++.||-..+..+...   ...+..++..+...|..++.
T Consensus       236 ~~--~----------~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL  301 (416)
T KOG2765|consen  236 QN--S----------DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIIL  301 (416)
T ss_pred             cc--c----------cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHH
Confidence            11  0          1123345799999999999999999999988766521222   33344444445555544443

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.19  E-value=6.2e-10  Score=100.64  Aligned_cols=136  Identities=13%  Similarity=0.100  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHhHhccCC---CCCCCHHHHHHHHHHHHHH
Q 025675            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSD-FVLIVYSNAFAAIFILLPSTFIYYRNRT---RPPLTVSIICKIFGLGLIS   81 (249)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p-~~~~~~R~~~a~i~~ll~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~   81 (249)
                      +...++.+++.|+.+.+..|...++ .+| ...+++...++.+. +.+......+...   ....+... ...+..|+..
T Consensus       190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~t  266 (358)
T PLN00411        190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIV-TSMIGLVVEKNNPSVWIIHFDITL-ITIVTMAIIT  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHH-HHHHHHHHccCCcccceeccchHH-HHHHHHHHHH
Confidence            5577889999999999999988776 554 46677888777776 5555544332111   01223222 2344455544


Q ss_pred             HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhc
Q 025675           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY  150 (249)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~  150 (249)
                      .+++.++++++++.+++.++++.+++|+++.++++++++|++++.      +++|.++.+.|+.+....
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhh
Confidence            678889999999999999999999999999999999999999999      999999999999887643

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.18  E-value=5.2e-09  Score=92.54  Aligned_cols=174  Identities=14%  Similarity=0.141  Sum_probs=135.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHH
Q 025675           33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTF  112 (249)
Q Consensus        33 ~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~  112 (249)
                      .|..+++.++..+.+. ..+.....+++.. ++.++   ..+...++...++..+-+.+++|+|...-.++-.+.|+.++
T Consensus        31 ~~~~lt~~q~~~~~~~-~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vm  105 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALF-SFILLSLFKFPKS-RKIPL---KKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVM  105 (303)
T ss_pred             ccHHHHHHHHHHHHHH-HHHHHHhccccCC-CcChH---HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHH
Confidence            3889999999998887 6665443331111 33333   55667777778888999999999999999999999999999


Q ss_pred             HHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 025675          113 ILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLL  192 (249)
Q Consensus       113 ~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~  192 (249)
                      +++.+++|+|.+++      ++.++++..+|+.+....+..+.+.          +.....++..|+++.+.+.++.+..
T Consensus       106 i~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~----------~~~~~~~~~~G~~ll~~sl~~~a~~  169 (303)
T PF08449_consen  106 ILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS----------SNSSSFSSALGIILLLLSLLLDAFT  169 (303)
T ss_pred             HHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc----------cccccccchhHHHHHHHHHHHHHHH
Confidence            99999999999999      9999999999998877543321110          0111122234999999999999999


Q ss_pred             HHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHH
Q 025675          193 YIVQTSIIREYP-EELMATFICCVFVTIQSTVVALI  227 (249)
Q Consensus       193 ~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~  227 (249)
                      .++++|..++++ ++.+.+++...++.+...+....
T Consensus       170 ~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~  205 (303)
T PF08449_consen  170 GVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFL  205 (303)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999987654 36889999999999998888777

; GO: 0055085 transmembrane transport

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.16  E-value=4.5e-10  Score=98.95  Aligned_cols=132  Identities=16%  Similarity=0.102  Sum_probs=103.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHH
Q 025675            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV   84 (249)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   84 (249)
                      .+.+++++++++|+.+.+..|...++ .+|.....   ..+.+. +.+..... .... ...+.+.+..+++.|+...++
T Consensus       156 ~G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~~---~~~~~~-l~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~t~~~  228 (295)
T PRK11689        156 LSYGLAFIGAFIWAAYCNVTRKYARG-KNGITLFF---ILTALA-LWIKYFLS-PQPA-MVFSLPAIIKLLLAAAAMGFG  228 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHHH---HHHHHH-HHHHHHHh-cCcc-ccCCHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999997654 78776532   333334 33333322 2211 235666677777777544889


Q ss_pred             HHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675           85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (249)
Q Consensus        85 ~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~  149 (249)
                      +.+|+.+++++++++++.+.+++|++..++++++++|+++..      +++|.++.+.|+.+...
T Consensus       229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence            999999999999999999999999999999999999999999      99999999999987653

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.04  E-value=5.4e-09  Score=92.23  Aligned_cols=137  Identities=15%  Similarity=0.120  Sum_probs=106.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHHhHhccC----CCCCCCHHHHHHHHHHH
Q 025675            5 GVTAVMVAVECLEVGSSTLNKAAMNKG--TSDFVLIVYSNAFAAIFILLPSTFIYYRNR----TRPPLTVSIICKIFGLG   78 (249)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~--~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~----~~~~~~~~~~~~~~~~g   78 (249)
                      .+.++.+++++.|+.+.+..|...+++  .+......+-...+.+. +.......++..    .....+.+.+..++.+|
T Consensus       143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIP-FFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHH-HHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            577889999999999999999875442  22233445555555444 333332222211    00234667788889999


Q ss_pred             HHH-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675           79 LIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (249)
Q Consensus        79 ~~~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~  148 (249)
                      +++ ...+.+|+.++++.++++++.+.+++|++..++++++++|+++..      +++|.++.+.|+.+..
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            998 899999999999999999999999999999999999999999999      9999999999998765

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.02  E-value=1.8e-09  Score=94.44  Aligned_cols=132  Identities=15%  Similarity=0.033  Sum_probs=92.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH
Q 025675            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDF----VLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI   80 (249)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~----~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (249)
                      ++..+.+.++++|+.+.+..|...++ .+|.    ....+.....++. +.+.....+++.. ...+++ +......+.+
T Consensus       144 ~g~~~~l~aal~~a~~~i~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~  219 (281)
T TIGR03340       144 KAYAWALAAALGTAIYSLSDKAAALG-VPAFYSALGYLGIGFLAMGWP-FLLLYLKRHGRSM-FPYARQ-ILPSATLGGL  219 (281)
T ss_pred             hHHHHHHHHHHHHHHhhhhccccccc-hhcccccHHHHHHHHHHHHHH-HHHHHHHHhccch-hhhHHH-HHHHHHHHHH
Confidence            45667889999999999998875433 4443    2333333333222 2222221122111 112222 2344555555


Q ss_pred             H-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhh
Q 025675           81 S-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (249)
Q Consensus        81 ~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~l  146 (249)
                      . ...+.+|++++++.+++.++.+.+++|++..++++++++|+++..      +++|..+.+.|+.+
T Consensus       220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l  280 (281)
T TIGR03340       220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence            5 889999999999999999999999999999999999999999999      99999999999865

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.97  E-value=4.1e-09  Score=92.98  Aligned_cols=140  Identities=16%  Similarity=0.139  Sum_probs=105.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCC-C-------CCHHH-HHH
Q 025675            4 VGVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP-P-------LTVSI-ICK   73 (249)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~-~-------~~~~~-~~~   73 (249)
                      ..+.++.+++++.|+...+..|...++ +.||..+..+....+++. ++|+....+.....+ .       ..... +..
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~-l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFL-LSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV  222 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence            347788999999999999999997762 389999999999999998 888876543211000 0       01001 111


Q ss_pred             HHHHHHHH-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhc
Q 025675           74 IFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY  150 (249)
Q Consensus        74 ~~~~g~~~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~  150 (249)
                      .+..+... ...+.+++.++++++++.+++..+..|++++++|+++++|+++.+      +++|.++.+.|+.+....
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~~  294 (302)
T TIGR00817       223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSRV  294 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHHH
Confidence            22222222 333456778999999999999999999999999999999999999      999999999999877643

specificities overlap.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.95  E-value=1.2e-10  Score=98.26  Aligned_cols=188  Identities=15%  Similarity=0.146  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025675           15 CLEVGSSTLNKAAMNKGT-SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIG   93 (249)
Q Consensus        15 ~~wg~~~~~~k~~~~~~~-~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~   93 (249)
                      ++=+.++.-...+ ++|+ -|..=+|..+..-+++ -.++..++++ .  .+..|   ...++++++..-++.+-..+.|
T Consensus        29 ~~t~~a~tss~la-~k~iN~Pt~QtFl~Y~LLalV-Y~~~~~fR~~-~--~~~~~---~hYilla~~DVEaNy~vV~AyQ  100 (336)
T KOG2766|consen   29 LITSTAFTSSELA-RKGINAPTSQTFLNYVLLALV-YGPIMLFRRK-Y--IKAKW---RHYILLAFVDVEANYFVVKAYQ  100 (336)
T ss_pred             HHHcchhhhHHHH-hccCCCccHHHHHHHHHHHHH-HhhHHHhhhH-H--HHHHH---HHhhheeEEeecccEEEeeehh
Confidence            3333344434433 3334 3667778888877777 7887776432 1  23444   3467778777667777789999


Q ss_pred             ccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCC
Q 025675           94 YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQK  173 (249)
Q Consensus        94 ~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (249)
                      ||+.+.+.++-.-.-..+.+++|+++|.|-++.      |+.|+++|+.|++.+++.+-            |+.+...+.
T Consensus       101 yTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sDV------------~agd~aggs  162 (336)
T KOG2766|consen  101 YTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSDV------------HAGDRAGGS  162 (336)
T ss_pred             hcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEeee------------ccccccCCC
Confidence            999999999987666667889999999999999      99999999999998875432            122244566


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 025675          174 NWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER  230 (249)
Q Consensus       174 ~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  230 (249)
                      +..+||.+.+++|..||..++....+.++.+ ..+.+....++|++...+- +++++
T Consensus       163 np~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~  217 (336)
T KOG2766|consen  163 NPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFER  217 (336)
T ss_pred             CCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhhc
Confidence            7789999999999999999999999999987 5899999999999999887 55554

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.82  E-value=1.7e-07  Score=80.47  Aligned_cols=152  Identities=14%  Similarity=0.186  Sum_probs=112.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhh
Q 025675           67 TVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (249)
Q Consensus        67 ~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~l  146 (249)
                      ++|+...+.+-+++.+..+.+.+.++++.+++.-.++..+-.+++.+++++++|+|++.+      ||+++.+.+.|+.+
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l   86 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL   86 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence            456666777778888899999999999999999999999999999999999999999999      99999999999987


Q ss_pred             hhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHH
Q 025675          147 VTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPE-ELMATFICCVFVTIQSTVVA  225 (249)
Q Consensus       147 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~g~i~~~~~~  225 (249)
                      +...+.+..+..   +.++.+......+...|.++.+.++++-++..++.+|..|+.+. ...-+......|.+..++..
T Consensus        87 v~~~~~~~~~~~---~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~  163 (244)
T PF04142_consen   87 VQLSSSQSSDNS---SSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLAL  163 (244)
T ss_pred             eecCCccccccc---cccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence            653221110000   00001111223456799999999999999999999999887643 34445555666666665554


Q ss_pred             HH
Q 025675          226 LI  227 (249)
Q Consensus       226 ~~  227 (249)
                      ..
T Consensus       164 ~~  165 (244)
T PF04142_consen  164 LL  165 (244)
T ss_pred             hc
Confidence            33

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.80  E-value=7e-08  Score=85.02  Aligned_cols=131  Identities=12%  Similarity=0.094  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHhHhccCC-CCCCCHHHHHHHHHHHHHHHHHH
Q 025675            8 AVMVAVECLEVGSSTLNKAAMNKG-TSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLISCCVQ   85 (249)
Q Consensus         8 ~~~l~~~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~   85 (249)
                      ...+.++++|+.+.+..|...++. .++.....+-..++.+. .++..   ..... ....++..+......|+....++
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~t~i~~  227 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIY-LFAIA---DSSTSHMGQNPMSLNLLLIAAGIVTTVPL  227 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH-HHHHc---cCCcccccCCcHHHHHHHHHHHHHHHHHH
Confidence            356778999999999999864321 22334444444444443 32221   11110 01112222334444565457899


Q ss_pred             HHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675           86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (249)
Q Consensus        86 ~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~  148 (249)
                      .+++.++++.+++.++.+.+++|++..++++++++|+++..      +++|+++.++|+.++.
T Consensus       228 ~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        228 LCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999      9999999999988776

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.80  E-value=1.3e-07  Score=74.86  Aligned_cols=134  Identities=19%  Similarity=0.244  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCC------C----CCHH
Q 025675            6 VTAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP------P----LTVS   69 (249)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~------~----~~~~   69 (249)
                      +.+..+.+.++-+...+..|...++      +.+|.++..+-...+.+. ++|.....++....+      +    .+.+
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~-l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~   79 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFII-LLPLAFLLEGPQLSSFFSEIFGEELSSDPN   79 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHHHhhhhhhcchHH
Confidence            3567888999999999999998866      689999999999999999 999887765432101      0    0223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhh
Q 025675           70 IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (249)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~l  146 (249)
                      .+..++..|+.+...+...+.-++++++...++..+.-.+.++++++++++|+++.+      ++.|+++++.|..+
T Consensus        80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            345556666667888999999999999999999999999999999999999999999      99999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.79  E-value=8.9e-08  Score=84.68  Aligned_cols=181  Identities=14%  Similarity=0.139  Sum_probs=141.7

Q ss_pred             HHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchh
Q 025675           22 TLNKAAMN--KGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTL   99 (249)
Q Consensus        22 ~~~k~~~~--~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~   99 (249)
                      +..|..++  ..--|..++..++..+.+. .+.......++.+ +..+...+..++-+|+..++...+-+.++.+.+.+-
T Consensus        34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~-~~v~~~l~~~~~~-~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF  111 (316)
T KOG1441|consen   34 ILNKYILSKYGFPFPITLTMLHLFCGALA-LLVIKVLKLVPPS-KISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSF  111 (316)
T ss_pred             EeeHhhhccCCCCCccHHHHHHHHHHHHH-HHHHHHhcCCCCC-ccccccchHHHHHHHHHHHHHHHhcchhhhccchhH
Confidence            35677777  4345889999988777776 5554443322222 212334456778888888888888999999999999


Q ss_pred             hhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHH
Q 025675          100 SSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGG  179 (249)
Q Consensus       100 a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  179 (249)
                      .-.+=.++|+++.++++++.+|+.+++      ....++....|+.+...  +                  +.+-...|.
T Consensus       112 ~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~--~------------------e~~fn~~G~  165 (316)
T KOG1441|consen  112 YQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASV--T------------------ELSFNLFGF  165 (316)
T ss_pred             HHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeee--c------------------cccccHHHH
Confidence            999999999999999999999999999      88888888899876542  1                  122346899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh----CCchhHHHHHHHHHHHHHHH-HHHHHhhcC
Q 025675          180 LVLAAGSFFLSLLYIVQTSIIRE----YPEELMATFICCVFVTIQST-VVALIAERN  231 (249)
Q Consensus       180 ~~~l~aa~~~a~~~v~~k~~~~~----~~~~~~~~~~~~~~g~i~~~-~~~~~~~~~  231 (249)
                      +.++++.+..+..++++|+..++    .+ +.+...++.-++.+.++ |+....|++
T Consensus       166 i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~  221 (316)
T KOG1441|consen  166 ISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGN  221 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhccc
Confidence            99999999999999999999852    44 68999999999999999 887776653

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.75  E-value=1.2e-07  Score=83.48  Aligned_cols=130  Identities=12%  Similarity=0.011  Sum_probs=101.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH---HHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH
Q 025675            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNA---FAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI   80 (249)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~---~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (249)
                      +|+....+++.+.++.+....|..  + .||...++....   +++.+ ..+..  + +. + +.. .+.....+..|++
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~-~~~~~--~-~~-~-~~~-~~~~~~~~~~Gi~  220 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGII-FNLGH--I-LA-K-PLK-KYAILLNILPGLM  220 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHH-HHHHH--h-cc-c-chH-HHHHHHHHHHHHH
Confidence            689999999999999999999965  3 789888555444   44444 33322  1 11 2 222 2333334457777


Q ss_pred             HHHHHHHHHHhhc-ccCchhhhhcccchHHHHHHHHHHHhhcccceeecccccee----ehHHHhhhhhhhhhh
Q 025675           81 SCCVQTCLYVGIG-YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKS----IGTMVSIAGALTVTL  149 (249)
Q Consensus        81 ~~~~~~~~~~gl~-~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~----~g~~l~~~Gv~li~~  149 (249)
                      ...++.+|+.|.+ +.+++.++++.+.+|+...+.+++++||+.+.+      ++    +|+++.+.|+.++..
T Consensus       221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHhc
Confidence            7888889999999 999999999999999999999999999999999      99    999999999987653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.75  E-value=2.2e-07  Score=83.91  Aligned_cols=138  Identities=14%  Similarity=0.063  Sum_probs=100.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhHhccC-CC------CCCCHHH
Q 025675            4 VGVTAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNR-TR------PPLTVSI   70 (249)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~-~~------~~~~~~~   70 (249)
                      ..+.+..+++++.|+...+..|...++      ..++..+..+....++++ ++|+....+... ..      ...+...
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lp~~~~~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLI-SLPLVLFFEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence            357888999999999999999998764      256777777778889988 888876432110 00      0001100


Q ss_pred             HHHHHHHHHHHHHHHHHHH----HhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhh
Q 025675           71 ICKIFGLGLISCCVQTCLY----VGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (249)
Q Consensus        71 ~~~~~~~g~~~~~~~~~~~----~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~l  146 (249)
                      +...+...+.....+.+++    .+++++++.++++..++.|++++++|+++++|+++..      +++|.++.+.|+.+
T Consensus       272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l  345 (350)
T PTZ00343        272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL  345 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence            1111222222234444444    6999999999999999999999999999999999999      99999999999976


Q ss_pred             hh
Q 025675          147 VT  148 (249)
Q Consensus       147 i~  148 (249)
                      -.
T Consensus       346 Ys  347 (350)
T PTZ00343        346 YS  347 (350)
T ss_pred             Hh
Confidence            54

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.68  E-value=4.7e-07  Score=78.16  Aligned_cols=131  Identities=18%  Similarity=0.169  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-H
Q 025675            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIV-YSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-C   82 (249)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~   82 (249)
                      .+.++.+.+++.|+.+.+..|... + .++..... +....+... ..+.  ......  ...+.+.+......|+++ .
T Consensus       154 ~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~--~~~~~~~~~~~~~~g~~~~~  226 (292)
T COG0697         154 LGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLL-LLLF--FLSGFG--APILSRAWLLLLYLGVFSTG  226 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHH-HHHH--Hhcccc--ccCCHHHHHHHHHHHHHHHH
Confidence            577889999999999999999876 4 67777777 444422222 2222  122111  234566778888889988 6


Q ss_pred             HHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675           83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (249)
Q Consensus        83 ~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~  148 (249)
                      ..+.+++.++++.+++.++.+.+++|++..++++++++|+++.+      +++|.++.+.|+.+..
T Consensus       227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999      9999999999988765

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.62  E-value=2e-06  Score=73.92  Aligned_cols=192  Identities=13%  Similarity=0.120  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHh---cCC----ChHHHHHHHHHHHHHHHHHHHHHhHhccCCCC----------C--CCHHHHHHHHHHH
Q 025675           18 VGSSTLNKAAMN---KGT----SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP----------P--LTVSIICKIFGLG   78 (249)
Q Consensus        18 g~~~~~~k~~~~---~~~----~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~----------~--~~~~~~~~~~~~g   78 (249)
                      +.+.+.+|.+-+   +|.    +|+.-+..-++.-..+ +..+.+++.|...+-          +  .+.+. ..++.-.
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflC-l~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl~Pa   93 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLC-LAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFLPPA   93 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCcccccccccccccCCCCc-ceecChH
Confidence            456678887653   233    3777666666666666 666666655433210          0  11221 1222334


Q ss_pred             HHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCccccc
Q 025675           79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM  158 (249)
Q Consensus        79 ~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~  158 (249)
                      +.......+++.|+.+|+++.--.+-...-+|+.+++..+++++++.+      +|.|+.....|++++...+ -...+.
T Consensus        94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d-~~~~~~  166 (372)
T KOG3912|consen   94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD-VHLVTD  166 (372)
T ss_pred             HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee-cccccC
Confidence            444777788999999999999999999999999999999999999999      9999999999998776432 111000


Q ss_pred             CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHH
Q 025675          159 SSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVALI  227 (249)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~  227 (249)
                              | -.+..+.+.|+++.++|=+.-|...++-+|..++.. +|.....|+.++|.+.+...+..
T Consensus       167 --------p-~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~  227 (372)
T KOG3912|consen  167 --------P-YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIP  227 (372)
T ss_pred             --------C-ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHH
Confidence                    0 112345678999999999999999999999988643 48999999999996655555443

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.55  E-value=4.8e-07  Score=68.35  Aligned_cols=67  Identities=15%  Similarity=0.159  Sum_probs=61.2

Q ss_pred             HHHHHH-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675           76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (249)
Q Consensus        76 ~~g~~~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~  148 (249)
                      ..++.+ ...+.++..++++.|.+.|-.+.++.|+++.++|++++|||++++      |++|+.+.++|++++.
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            344455 788899999999999999999999999999999999999999999      9999999999998765

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.43  E-value=3.2e-06  Score=75.61  Aligned_cols=138  Identities=14%  Similarity=0.068  Sum_probs=107.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCC-CCCCCHHHHHHHHHHHHHHH
Q 025675            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLISC   82 (249)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~   82 (249)
                      .++-+.++.+++++|.+.+.-|...++ .|+.++...=.+++.++ ..+.....+++.. ...++++....+..-++..+
T Consensus       167 i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii-~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf  244 (334)
T PF06027_consen  167 ILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFII-SGIQLAILERSGIESIHWTSQVIGLLVGYALCLF  244 (334)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHH-HHHHHHheehhhhhccCCChhhHHHHHHHHHHHH
Confidence            467889999999999999999998886 89999998888888888 8777766555332 12334443333222222226


Q ss_pred             HHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675           83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (249)
Q Consensus        83 ~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~  149 (249)
                      ..+.+.-..+++++|+...+-.-+..+++.+.+++++|+++++.      .++|.++.++|.++...
T Consensus       245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~  305 (334)
T PF06027_consen  245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL  305 (334)
T ss_pred             HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence            66667788899999987777777889999999999999999998      99999999999987654

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.34  E-value=0.00024  Score=63.13  Aligned_cols=203  Identities=12%  Similarity=0.078  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHhHhcc--CC-CCC------CCHHHHHHH
Q 025675            7 TAVMVAVECLEVGSSTLNKAAMNKG---TSDFVLIVYSNAFAAIFILLPSTFIYYRN--RT-RPP------LTVSIICKI   74 (249)
Q Consensus         7 ~~~~l~~~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~i~~ll~~~~~~~~~--~~-~~~------~~~~~~~~~   74 (249)
                      ++.++...+.++......|+....+   ..|...++.--.+-.++ ++...+...|+  .+ .+.      ..+++....
T Consensus        17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~-c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~   95 (345)
T KOG2234|consen   17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVF-CLFLLLFEERKYAKKSLKSLSKEILAAPRETLKV   95 (345)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHH
Confidence            4566777888999999999987665   66778888877777777 66665554322  11 011      123333445


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCc
Q 025675           75 FGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPA  154 (249)
Q Consensus        75 ~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~  154 (249)
                      .+-+++.++.+-++++++.+.+++.-.+...+--..+.+++.+++++|++++      ||.+.++.++|+.++.....+ 
T Consensus        96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~-  168 (345)
T KOG2234|consen   96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLS-  168 (345)
T ss_pred             HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCC-
Confidence            5556666777779999999999999999999999999999999999999999      999999999999877521111 


Q ss_pred             ccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHHHHHH
Q 025675          155 LVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEE-LMATFICCVFVTIQSTVVA  225 (249)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~g~i~~~~~~  225 (249)
                      ..       +..+ ....++...|...++.+.+.-++..++.+|..|+-..+ ..-+.-...+|.+..+...
T Consensus       169 ~~-------~a~~-~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~  232 (345)
T KOG2234|consen  169 PT-------GAKS-ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTI  232 (345)
T ss_pred             CC-------CccC-CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            00       0000 12345678899999999888888899999998764322 3333344444544444443

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.32  E-value=5.7e-06  Score=70.17  Aligned_cols=132  Identities=15%  Similarity=0.093  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 025675            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC   83 (249)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (249)
                      .+..+.+.+..+|..+-+..|.+-+. .+--.=+..-++.++++ .+|+-.-....   --.+++....-+.+|+++ .+
T Consensus       148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAavi-v~Pig~~~ag~---~l~~p~ll~laLgvavlSSal  222 (292)
T COG5006         148 VGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALI-VLPIGAAQAGP---ALFSPSLLPLALGVAVLSSAL  222 (292)
T ss_pred             HHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHH-Hhhhhhhhcch---hhcChHHHHHHHHHHHHhccc
Confidence            45678899999999999999988754 56667778888999999 99987643221   123455556667788888 99


Q ss_pred             HHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhh
Q 025675           84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (249)
Q Consensus        84 ~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li  147 (249)
                      .|.+...++.+.|...-+++.+++|.+..+.++++++|+++..      ||.|+...+++..=.
T Consensus       223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsaG~  280 (292)
T COG5006         223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASAGS  280 (292)
T ss_pred             chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999      999999877776533

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.31  E-value=8.2e-06  Score=63.26  Aligned_cols=117  Identities=15%  Similarity=0.134  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 025675            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC   83 (249)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (249)
                      +++++++...++-+...++.|...++ .++.+.... . .   . .+. .  . .  .    +    ...+..|+.. .+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~---~-~~~-~--~-~--~----p----~~~i~lgl~~~~l   60 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-I---A-ALL-A--F-G--L----A----LRAVLLGLAGYAL   60 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-H---H-HHH-H--H-h--c----c----HHHHHHHHHHHHH
Confidence            46778888888888899999988876 544332221 1 1   1 011 0  0 0  0    1    2246678877 89


Q ss_pred             HHHHHHHhhcccCchhhhhcccchHHHHHHHHHH--HhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675           84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALI--SRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (249)
Q Consensus        84 ~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~--~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~  148 (249)
                      ++.++..++++.+++.|..+.+..++++.+.++.  +++|+++++      |++|+++.++|+.++.
T Consensus        61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999888888885  799999999      9999999999998876

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.31  E-value=2.1e-06  Score=70.35  Aligned_cols=99  Identities=20%  Similarity=0.248  Sum_probs=87.9

Q ss_pred             HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCC
Q 025675           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS  161 (249)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~  161 (249)
                      .+.++.|..+++.++++.++.+......|+.+++++.+++|+.-.      |+++..+++.|++++...++.        
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~DN~--------  129 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYADNE--------  129 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEeccch--------
Confidence            677889999999999999999999999999999999999999988      999999999999887754432        


Q ss_pred             CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 025675          162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP  204 (249)
Q Consensus       162 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~  204 (249)
                                -.+.+.|+.++..+++--|+|.++-|+...+.+
T Consensus       130 ----------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn  162 (290)
T KOG4314|consen  130 ----------HADEIIGIACAVGSAFMAALYKVLFKMFIGNAN  162 (290)
T ss_pred             ----------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence                      245689999999999999999999998876543

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.20  E-value=3.2e-05  Score=67.36  Aligned_cols=171  Identities=17%  Similarity=0.185  Sum_probs=114.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhccCC--CCCCCHHHHH-HHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHH
Q 025675           34 DFVLIVYSNAFAAIFILLPSTFIYYRNRT--RPPLTVSIIC-KIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAF  110 (249)
Q Consensus        34 p~~~~~~R~~~a~i~~ll~~~~~~~~~~~--~~~~~~~~~~-~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~  110 (249)
                      |+.++....+.=... ........+++..  ..+.+|++.. +..-.|+.+++--.+-+++++|++.+--+..=++.++|
T Consensus        45 PLf~ts~h~~v~flf-a~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~F  123 (349)
T KOG1443|consen   45 PLFVTSLHLAVKFLF-AALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILF  123 (349)
T ss_pred             chHHHHHHHHHHHHH-HHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHH
Confidence            777776655444333 2222222222111  0245665533 34455666667777889999999999999999999999


Q ss_pred             HHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 025675          111 TFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLS  190 (249)
Q Consensus       111 ~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a  190 (249)
                      +.++|.++.-||.+|.      -..-+.+..+|+++.+ .|+.                   +-...|-.+++.+++.-+
T Consensus       124 IllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~KsT-------------------qf~i~Gf~lv~~aS~~sG  177 (349)
T KOG1443|consen  124 ILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKST-------------------QFNIEGFFLVLAASLLSG  177 (349)
T ss_pred             HHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-eccc-------------------ceeehhHHHHHHHHHhhh
Confidence            9999999999999988      5566666667776665 3332                   223567777877777766


Q ss_pred             HHHHHHHHHHhhCC----chhHHHHHHHHHHHHHHHHHHHHhhcC
Q 025675          191 LLYIVQTSIIREYP----EELMATFICCVFVTIQSTVVALIAERN  231 (249)
Q Consensus       191 ~~~v~~k~~~~~~~----~~~~~~~~~~~~g~i~~~~~~~~~~~~  231 (249)
                      +--.+.++..++.|    .|+...+..+-.-.+..+|..+.+|+.
T Consensus       178 lRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~  222 (349)
T KOG1443|consen  178 LRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGL  222 (349)
T ss_pred             hhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence            65555555555543    467777777777778888888888764

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.01  E-value=0.00048  Score=59.71  Aligned_cols=135  Identities=11%  Similarity=-0.016  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhccc-chHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhh
Q 025675           68 VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (249)
Q Consensus        68 ~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~-~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~l  146 (249)
                      .+.+..-++.|++....|...+.+.++.+.+++.-+.. .+=+.+.+.+.++++|--+.+.+.  .-..++++.++|+.+
T Consensus        42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~--~G~~Al~liiiGv~l  119 (269)
T PF06800_consen   42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKI--IGFLALVLIIIGVIL  119 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHH--HHHHHHHHHHHHHHH
Confidence            36777777888888999999999999999999999976 666668888999999987766210  123467778888876


Q ss_pred             hhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Q 025675          147 VTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQ  220 (249)
Q Consensus       147 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~  220 (249)
                      ....++.+.            +.++..+...|....++++++|..|.++.|-  .+.+ +.+..+=| .+|.+.
T Consensus       120 ts~~~~~~~------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~-~~~~~lPq-aiGm~i  177 (269)
T PF06800_consen  120 TSYQDKKSD------------KSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHVS-GWSAFLPQ-AIGMLI  177 (269)
T ss_pred             hcccccccc------------ccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCCC-hhHhHHHH-HHHHHH
Confidence            553322211            1112345567999999999999999999664  3443 56655544 444433

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=0.0013  Score=57.70  Aligned_cols=192  Identities=10%  Similarity=0.044  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHH--HHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 025675           10 MVAVECLEVGSSTLNKAAMNKGTSDFVLIV--YSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTC   87 (249)
Q Consensus        10 ~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~--~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   87 (249)
                      .+.-++.-..+.+.-|.++...=-|..+..  ++.+.+.+. +...-..  |-.+.+..+++..+..+-..++-.+....
T Consensus        17 a~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~-v~~lk~~--~lv~~~~l~~~~~kk~~P~~~lf~~~i~t   93 (314)
T KOG1444|consen   17 ALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLV-VLVLKRL--GLVNFRPLDLRTAKKWFPVSLLFVGMLFT   93 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHh--ceeecCCcChHHHHHHccHHHHHHHHHHH
Confidence            333333333444566777765323444444  888888776 5543322  22223566777666666666665555555


Q ss_pred             HHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCC
Q 025675           88 LYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNE  167 (249)
Q Consensus        88 ~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~  167 (249)
                      -..+++|.+...-+++-+..|+++.+....+++.|++++      .+..+....+|...-... +               
T Consensus        94 ~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~-d---------------  151 (314)
T KOG1444|consen   94 GSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFT-D---------------  151 (314)
T ss_pred             ccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccc-c---------------
Confidence            678999999999999999999999999999999998888      888888888887654421 1               


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHhhc
Q 025675          168 LRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAER  230 (249)
Q Consensus       168 ~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~  230 (249)
                          ......|..+.+..-+.-+.+.+..||..+..+ ....+++|..+..........+++++
T Consensus       152 ----~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge  211 (314)
T KOG1444|consen  152 ----LSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGE  211 (314)
T ss_pred             ----ceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcc
Confidence                111234899999999999999999998876532 13678889999988888888777654

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.74  E-value=0.0013  Score=59.05  Aligned_cols=176  Identities=11%  Similarity=0.044  Sum_probs=112.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHHHHHHH--hHhccC--CCCCCCHHHHHHHHHHH
Q 025675            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVY-SNAFAAIFILLPSTF--IYYRNR--TRPPLTVSIICKIFGLG   78 (249)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~-R~~~a~i~~ll~~~~--~~~~~~--~~~~~~~~~~~~~~~~g   78 (249)
                      ..+++..++++++||+.+...|. .++  -+.+.... -..++.+  +.|+..  ...+..  ...+.+.+.+..-++-|
T Consensus         6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~--w~wE~~W~v~gi~~wl--~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G   80 (345)
T PRK13499          6 ILGIIWHLIGGASSGSFYAPFKK-VKK--WSWETMWSVGGIFSWL--ILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG   80 (345)
T ss_pred             HHHHHHHHHHHHHhhcccccccc-cCC--CchhHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence            46889999999999999999998 332  33332211 1111111  122110  000100  01234566666666777


Q ss_pred             HHHHHHHHHHHHhhcccCchhhhhcc-cchHHHHHHHHHHHhhccc---ceeeccccceeehHHHhhhhhhhhhhccCCc
Q 025675           79 LISCCVQTCLYVGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKL---DLRVQSSLAKSIGTMVSIAGALTVTLYKGPA  154 (249)
Q Consensus        79 ~~~~~~~~~~~~gl~~~~a~~a~ii~-~~~Pv~~~~ls~~~~~Ek~---~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~  154 (249)
                      ++-...+..++.++++.+.+.+.-+. .++-+...+++.++++|=-   +-+  ....-.+|+++.++|+.+......-+
T Consensus        81 ~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~Ag~~k  158 (345)
T PRK13499         81 ALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRAGQLK  158 (345)
T ss_pred             HHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            77789999999999999999998885 4888899999999988633   222  12236789999999998776421100


Q ss_pred             ccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 025675          155 LVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY  193 (249)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~  193 (249)
                           |  +++.+|....++...|..+++++++.+++|+
T Consensus       159 -----~--~~~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        159 -----E--RKMGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             -----c--cccccccccccchHhHHHHHHHHHHHHHHHH
Confidence                 0  0001111223456789999999999999999

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.73  E-value=0.00042  Score=61.27  Aligned_cols=137  Identities=19%  Similarity=0.217  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHh--HhccCC---CCCCCHHHHHHHHHHHH
Q 025675            6 VTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFI--YYRNRT---RPPLTVSIICKIFGLGL   79 (249)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~ll~~~~~--~~~~~~---~~~~~~~~~~~~~~~g~   79 (249)
                      ++.+++++.++-|...+.-+...++ +.+|.+..++-..++.+. .++....  .+.-..   ....+...+..++...+
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~-~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~  233 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPF-LLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL  233 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence            7888999999999999999988854 689999999999999988 7776665  221110   00112223445566666


Q ss_pred             HHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675           80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (249)
Q Consensus        80 ~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~  149 (249)
                      .+...+.+.+.-.++.++...+++..+--+++++++.+++++++++.      +|+|+++.+.|..+=..
T Consensus       234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYSY  297 (303)
T ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHHH
Confidence            66777777778889999999999999999999999999999999999      99999999999876543

; GO: 0055085 transmembrane transport

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.72  E-value=0.00027  Score=61.22  Aligned_cols=131  Identities=11%  Similarity=-0.043  Sum_probs=90.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHH
Q 025675            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCC   83 (249)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   83 (249)
                      .|++..++++.+.+..+..+.|..   ++||....+=+...=.+. .+.+....+++.+ .|.+++    -++.|++...
T Consensus       137 ~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~-a~i~~~~~~~~~~-~k~~~~----nil~G~~w~i  207 (269)
T PF06800_consen  137 KKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIG-AFIFNLFSKKPFF-EKKSWK----NILTGLIWGI  207 (269)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHH-HHHHhhccccccc-ccchHH----hhHHHHHHHH
Confidence            468899999999999999998863   378877776443322222 2222222222222 333443    3455777788


Q ss_pred             HHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhh
Q 025675           84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL  145 (249)
Q Consensus        84 ~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~  145 (249)
                      ++.+++.+.+..+.+.+-.+..+.++...+.+.+++||+=++|++.  ..++|+++.++|.+
T Consensus       208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~--~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMI--YTLIGLILIVIGAI  267 (269)
T ss_pred             HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHH--HHHHHHHHHHHhhh
Confidence            8899999999999999999999999999999999999998877321  13445555555543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00688 rarD rarD protein

Probab=97.70  E-value=0.00074  Score=58.00  Aligned_cols=106  Identities=8%  Similarity=-0.048  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025675            9 VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCL   88 (249)
Q Consensus         9 ~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   88 (249)
                      ..+.+++.|+.+.+..|...++  ++........ ..... ..+................++|...+..|+.+..++.++
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~  225 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKNT--DLAGFCLETL-SLMPV-AIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAF  225 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHH-HHHHH-HHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999986543  3333322221 11111 111111111111001112246777888887778899999


Q ss_pred             HHhhcccCchhhhhcccchHHHHHHHHHHH
Q 025675           89 YVGIGYSSPTLSSAIVDLTPAFTFILALIS  118 (249)
Q Consensus        89 ~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~  118 (249)
                      +.|+++.+++.++.+.+++|+++.+++.++
T Consensus       226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.41  E-value=0.0035  Score=54.47  Aligned_cols=129  Identities=10%  Similarity=-0.004  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025675           10 MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLISCCVQTCL   88 (249)
Q Consensus        10 ~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~   88 (249)
                      .+..++.||.+...=|..   ++|+.+=...-.+.-.+. .+........+.+ ..+.+.+.+..+...|.+.+.+-.+|
T Consensus       153 al~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~-al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf  228 (293)
T COG2962         153 ALALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPV-ALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLF  228 (293)
T ss_pred             HHHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHH-HHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHH
Confidence            345577888888777753   367776666666555555 4444444332221 01234455677888899989999999


Q ss_pred             HHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675           89 YVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (249)
Q Consensus        89 ~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~  148 (249)
                      ..|-++++-+.-++++|.+|....+++.++++|+++..      +.++-+..-.|+++..
T Consensus       229 ~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~  282 (293)
T COG2962         229 AAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS  282 (293)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999      9999999888987765

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.22  E-value=0.00092  Score=59.40  Aligned_cols=138  Identities=14%  Similarity=0.171  Sum_probs=108.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHHH-HHHHhHhccC----CCCCCCHHHHHHH
Q 025675            3 SVGVTAVMVAVECLEVGSSTLNKAAMN---KGTSDFVLIVYSNAFAAIFILL-PSTFIYYRNR----TRPPLTVSIICKI   74 (249)
Q Consensus         3 ~~~~~~~~l~~~~~wg~~~~~~k~~~~---~~~~p~~~~~~R~~~a~i~~ll-~~~~~~~~~~----~~~~~~~~~~~~~   74 (249)
                      |+.+.+..+.+.+..+.-.++.|..+.   +..|+..+..+..-++.+. ++ |+....+...    .....+... ...
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~-Ll~P~~~~~~~~~~~~~~~~~~~~~~-~~~  238 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIF-LLIPFLDYVEGNKFVGFLTAPWFVTF-LIL  238 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHH-HhcchHhhhcccceeeeeccccchhh-HHH
Confidence            457888999999999999999999983   3589999999999999999 88 8776644322    111333333 333


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675           75 FGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (249)
Q Consensus        75 ~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~  148 (249)
                      ....+.....+..-|.-+++++|-+=++....==+++++.|+++++|++++.      +..|+.+++.|+.+=.
T Consensus       239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence            4444555777788899999999999999988777778888999999999999      9999999999997644

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.20  E-value=0.0033  Score=47.24  Aligned_cols=60  Identities=17%  Similarity=0.153  Sum_probs=53.3

Q ss_pred             HHHHHHHHHhhcccCchhhhhc-ccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhh
Q 025675           82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (249)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~a~ii-~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li  147 (249)
                      ..++.+...++++.|.+.|=.+ ....-+.+.+.++++++|++++.      |++|+.+.+.|++.+
T Consensus        46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            6788889999999999988665 45888889999999999999999      999999999999865

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.12  E-value=0.00098  Score=50.27  Aligned_cols=109  Identities=16%  Similarity=0.177  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH-HHHHHHHHH
Q 025675           11 VAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI-SCCVQTCLY   89 (249)
Q Consensus        11 l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~   89 (249)
                      +++.++||++.++.|.+.+. .++..-.. |. ..-.. .    . .        .+++   +.  .++. +-.....|+
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~-~~~~~-~----L-l--------~n~~---y~--ipf~lNq~GSv~f~   59 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QL-LQEIK-F----L-L--------LNPK---YI--IPFLLNQSGSVLFF   59 (113)
T ss_pred             eeehHHhcCchHHHHHHHhh-cCCccchH-HH-HHHHH-H----H-H--------HhHH---HH--HHHHHHHHHHHHHH
Confidence            45789999999999998865 44443332 32 22211 1    0 0        1222   11  1333 366677889


Q ss_pred             HhhcccCchhhhhccc-chHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhh
Q 025675           90 VGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (249)
Q Consensus        90 ~gl~~~~a~~a~ii~~-~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li  147 (249)
                      +.+...+.+.+..+.| +.=+++.+.++++.+|..+++      +++|+.+.+.|+.++
T Consensus        60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC  112 (113)
T ss_pred             HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence            9999999999999975 666777777877777776777      899999999998764

Many members are annotated as potential transmembrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.11  E-value=0.0047  Score=46.48  Aligned_cols=65  Identities=25%  Similarity=0.302  Sum_probs=56.1

Q ss_pred             HHHH-HHHHHHHHHhhcccCchhhhhc-ccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675           78 GLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (249)
Q Consensus        78 g~~~-~~~~~~~~~gl~~~~a~~a~ii-~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~  148 (249)
                      .+.+ .+.+.++..++++.|.+.|=.+ ....-+.+.+.++++++|++++.      +++|+.+.++|++.+.
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3444 7788888999999999988766 45788888999999999999999      9999999999998875

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.08  E-value=0.0035  Score=53.07  Aligned_cols=170  Identities=12%  Similarity=0.078  Sum_probs=113.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHH
Q 025675           34 DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFI  113 (249)
Q Consensus        34 p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~  113 (249)
                      ...+++.+.....+. .=.+..++.+ .+   .+...-......++-..+++..-+.++++.|=-...+=-+.-|+=+++
T Consensus        53 alaLVf~qC~~N~vf-Akvl~~ir~~-~~---~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMi  127 (337)
T KOG1580|consen   53 ALALVFFQCTANTVF-AKVLFLIRKK-TE---IDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMI  127 (337)
T ss_pred             HHHHHHHHHHHHHHH-HHhheeeccc-cc---ccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceee
Confidence            445667777666665 4333322222 11   221111233344444466677778999999988888888899999999


Q ss_pred             HHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 025675          114 LALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY  193 (249)
Q Consensus       114 ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~  193 (249)
                      +++++.|.+-.|+      |...++..++|+.+....++...             ....++...|+++.+.+---=.+..
T Consensus       128 lGVl~~~KsY~w~------kY~cVL~IV~GValFmYK~~Kv~-------------g~e~~t~g~GElLL~lSL~mDGlTg  188 (337)
T KOG1580|consen  128 LGVLFAHKSYHWR------KYCCVLMIVVGVALFMYKENKVG-------------GAEDKTFGFGELLLILSLAMDGLTG  188 (337)
T ss_pred             eehhhhcccccHH------HHHHHHHHHHHHHHhhccccccC-------------CCcccccchHHHHHHHHHHhcccch
Confidence            9999999999998      99999999999987763322211             1123456689999999887777788


Q ss_pred             HHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHH
Q 025675          194 IVQTSIIREYP-EELMATFICCVFVTIQSTVVALI  227 (249)
Q Consensus       194 v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~  227 (249)
                      ..|+++.+++. ...+++++..+-+++.+..-.++
T Consensus       189 ~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lf  223 (337)
T KOG1580|consen  189 SIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLF  223 (337)
T ss_pred             hHHHHHHHhhccCchhhHHHHHHHHHHHhhhhhee
Confidence            88888877653 23566777777666665544333

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=97.08  E-value=9.7e-05  Score=62.59  Aligned_cols=171  Identities=13%  Similarity=0.050  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 025675            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (249)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (249)
                      .++..++=++.||.........   |=+|.+=+..-.+.|.++ .+.+.++ .+    |..+.+.+..-++-|++....|
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALif-aiiv~~~-~~----p~~T~~~~iv~~isG~~Ws~GQ   73 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIF-AIIVFLF-VS----PELTLTIFIVGFISGAFWSFGQ   73 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHH-HHHHhee-ec----CccchhhHHHHHHhhhHhhhhh
Confidence            4667788899999888765432   346666555555455444 3433333 22    5567776676667777778899


Q ss_pred             HHHHHhhcccCchhhhhccc-chHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCC
Q 025675           86 TCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL  164 (249)
Q Consensus        86 ~~~~~gl~~~~a~~a~ii~~-~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~  164 (249)
                      ...+-+.++.+.++|.-+.+ ++-+-+.+++++.+||=-+..         -..+++...+++..  +-.+++.   .++
T Consensus        74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~---------~~IlG~iAlilivi--G~~lTs~---~~~  139 (288)
T COG4975          74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPT---------QIILGFIALILIVI--GIYLTSK---QDR  139 (288)
T ss_pred             hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcch---------hHHHHHHHHHHHHH--hheEeee---ecc
Confidence            99999999999999999976 888888899999999865433         33344444433321  1111100   001


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 025675          165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSI  199 (249)
Q Consensus       165 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~  199 (249)
                      ++.|.++.++.-.|....+.+.++|..|.++.+-.
T Consensus       140 ~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f  174 (288)
T COG4975         140 NNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLF  174 (288)
T ss_pred             ccccccChHhhhhheeeeeeeccceeeeEeeeccc
Confidence            12223344456678888888999999888886544

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.03  E-value=0.0036  Score=47.84  Aligned_cols=66  Identities=17%  Similarity=0.152  Sum_probs=57.3

Q ss_pred             HHHH-HHHHHHHHHhhcccCchhhhhcc-cchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675           78 GLIS-CCVQTCLYVGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (249)
Q Consensus        78 g~~~-~~~~~~~~~gl~~~~a~~a~ii~-~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~  149 (249)
                      .+.. ...+.++..++++.|.+.|=.+- ...-+.+.++++++++|++++.      |++|+.+.++|++.+-.
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence            3444 78888999999999999887774 5888899999999999999999      99999999999987753

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=97.02  E-value=0.0045  Score=55.57  Aligned_cols=140  Identities=12%  Similarity=0.075  Sum_probs=109.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHhHhcc--CCCCCCCHHHHHHHHHHH
Q 025675            4 VGVTAVMVAVECLEVGSSTLNKAAMNK---GTSDFVLIVYSNAFAAIFILLPSTFIYYRN--RTRPPLTVSIICKIFGLG   78 (249)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~---~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~--~~~~~~~~~~~~~~~~~g   78 (249)
                      +.+.++.+.+++.+|++.++.|.-.++   .+|--++..+-.++..++ ++|..++...-  .+.+-.+..+...++..+
T Consensus       246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnlll-lwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~  324 (416)
T KOG2765|consen  246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLL-LWPPLIILDFFGEERFELPSSTQFSLVVFNN  324 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHH-HhHHHHHHHHhccCcccCCCCceeEeeeHhh
Confidence            567889999999999999999987643   267777777777888888 88766654321  111233444455677889


Q ss_pred             HHH-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhc
Q 025675           79 LIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY  150 (249)
Q Consensus        79 ~~~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~  150 (249)
                      +++ +...++|.+|.-.|++-.+++=+.++--.+++.-.++.+.++++.      .++|....++|-+++...
T Consensus       325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~~  391 (416)
T KOG2765|consen  325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNIS  391 (416)
T ss_pred             HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheecc
Confidence            999 999999999999999999999888766667777888878888887      999999999998877644

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.01  E-value=0.00035  Score=60.01  Aligned_cols=136  Identities=11%  Similarity=0.067  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 025675            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (249)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (249)
                      +....+..++.-+..++..|..-++ .+......+=.+++.+. -+......+ +.+.| -.+|++..+..+|+.|++.|
T Consensus       192 gt~aai~s~lf~asvyIilR~iGk~-~h~~msvsyf~~i~lV~-s~I~~~~ig-~~~lP-~cgkdr~l~~~lGvfgfigQ  267 (346)
T KOG4510|consen  192 GTVAAISSVLFGASVYIILRYIGKN-AHAIMSVSYFSLITLVV-SLIGCASIG-AVQLP-HCGKDRWLFVNLGVFGFIGQ  267 (346)
T ss_pred             chHHHHHhHhhhhhHHHHHHHhhcc-ccEEEEehHHHHHHHHH-HHHHHhhcc-ceecC-ccccceEEEEEehhhhhHHH
Confidence            3455666777777778888876454 77666666666666655 444333222 33323 34556567788999999999


Q ss_pred             HHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhcc
Q 025675           86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK  151 (249)
Q Consensus        86 ~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~  151 (249)
                      ++...|+|.-.++..+++.++.-+++.+.-.++++|-+++.      .|+|+++.+...+.....+
T Consensus       268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a~~k  327 (346)
T KOG4510|consen  268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVALKK  327 (346)
T ss_pred             HHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHHHHH
Confidence            99999999999999999999999999999999999999999      8999988888877776443

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=0.0078  Score=52.06  Aligned_cols=173  Identities=13%  Similarity=0.067  Sum_probs=115.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhHhccCC---CC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccch
Q 025675           33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRT---RP--PLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLT  107 (249)
Q Consensus        33 ~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~---~~--~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~  107 (249)
                      -|..++.++.+....+ ++.+.....+-..   .+  +.+.+..++.+-+.++-...-.+-++.++|.+.+---+=-.+.
T Consensus        60 ~plf~t~~qcLvt~~~-c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLt  138 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSI-CLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLT  138 (347)
T ss_pred             cHHHHHHHHHHHHHHH-HHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchh
Confidence            4888999999998888 7777665433211   12  2344433444333333222222335666777666544445678


Q ss_pred             HHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 025675          108 PAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSF  187 (249)
Q Consensus       108 Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~  187 (249)
                      -+|+.++++.++|+|-+..      ...++.+.+.|-.+     |.+.|            +..+.-...|.++...+.+
T Consensus       139 tvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~l-----GvdqE------------~~~~~ls~~GvifGVlaSl  195 (347)
T KOG1442|consen  139 TVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGL-----GVDQE------------GSTGTLSWIGVIFGVLASL  195 (347)
T ss_pred             hhHHHHhHHhhcccccccc------cceeehhheehhee-----ccccc------------cccCccchhhhHHHHHHHH
Confidence            8999999999999998888      77777777666432     11111            1223345689999999999


Q ss_pred             HHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHHHHhh
Q 025675          188 FLSLLYIVQTSIIREYPE-ELMATFICCVFVTIQSTVVALIAE  229 (249)
Q Consensus       188 ~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~g~i~~~~~~~~~~  229 (249)
                      +-|...+..||......+ ....+++..+.+.+.+.|...+.+
T Consensus       196 ~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lng  238 (347)
T KOG1442|consen  196 AVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNG  238 (347)
T ss_pred             HHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcc
Confidence            999999999977554432 467899999999999999877654

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.93  E-value=0.068  Score=46.93  Aligned_cols=170  Identities=16%  Similarity=0.174  Sum_probs=119.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHH
Q 025675           33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTF  112 (249)
Q Consensus        33 ~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~  112 (249)
                      +|..+.+.+-+.+.+. -  ......++..  ....+.+..+-..++.+.....|.+.+++|.+=-.-.+==..=-+=++
T Consensus        50 ~~~fL~~~q~l~~~~~-s--~~~l~~~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm  124 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLV-S--YAMLKWWKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM  124 (327)
T ss_pred             ccHHHHHHHHHHHHHH-H--HHHHhccccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence            5778888888777766 3  2223333222  222233456677788888888999999999875544444344444456


Q ss_pred             HHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 025675          113 ILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLL  192 (249)
Q Consensus       113 ~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~  192 (249)
                      +++.++.+.|.+++      +-+..++.-.|+.+....+.++  +    +.     .....+...|..++...-.+=++.
T Consensus       125 lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~--s----~~-----~~g~~ns~~G~~Ll~~~L~fDgfT  187 (327)
T KOG1581|consen  125 LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD--S----SS-----KSGRENSPIGILLLFGYLLFDGFT  187 (327)
T ss_pred             HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC--C----cc-----ccCCCCchHhHHHHHHHHHHHhhH
Confidence            78999999999999      8888888888887665443221  0    00     122345678999999998888899


Q ss_pred             HHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHH
Q 025675          193 YIVQTSIIREYP-EELMATFICCVFVTIQSTVV  224 (249)
Q Consensus       193 ~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~  224 (249)
                      +..|+++-++.. ++..++++..+++++.....
T Consensus       188 n~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~  220 (327)
T KOG1581|consen  188 NATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY  220 (327)
T ss_pred             HhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh
Confidence            999999988643 36889999999999988776

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.84  E-value=0.0026  Score=47.33  Aligned_cols=61  Identities=18%  Similarity=0.140  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhhcccCchhhhhc-ccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675           82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (249)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~a~ii-~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~  148 (249)
                      ..++.+...++|++|.+.|=.+ ....-+.+.+.++++++|+++..      |++|+.+.++|++.+.
T Consensus        41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence            7888889999999999988555 56888999999999999999999      9999999999998764

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.76  E-value=0.008  Score=43.74  Aligned_cols=52  Identities=15%  Similarity=0.027  Sum_probs=31.9

Q ss_pred             HHHHHHHHHhhcccCchhhhh-cccchHHHHHHHHHHHhhcccceeeccccceeehHHH
Q 025675           82 CCVQTCLYVGIGYSSPTLSSA-IVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMV  139 (249)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~a~i-i~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l  139 (249)
                      .....++..++++.|.+.+=. ......+.+.+.+.++++|+++.+      |++|+.+
T Consensus        40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l   92 (93)
T PF00893_consen   40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence            778889999999999999944 466999999999999999999999      9999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.73  E-value=0.012  Score=43.90  Aligned_cols=61  Identities=10%  Similarity=0.043  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhhcccCchhhhhc-ccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675           82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (249)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~a~ii-~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~  148 (249)
                      ..++.+...++++.|.+.|=.+ ....-+.+.+.+.++++|++++.      |++|+.+.++|++.+.
T Consensus        40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence            7888889999999999988665 45888899999999999999999      9999999999998764

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.61  E-value=0.073  Score=48.00  Aligned_cols=145  Identities=14%  Similarity=-0.011  Sum_probs=88.6

Q ss_pred             hhHHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHHHHHHHHHhH--hccCCC---CCC-C
Q 025675            4 VGVTAVMVAVECLEVGSS-------TLNKAAMNKGTSDFVLIVYSNA---FAAIFILLPSTFIY--YRNRTR---PPL-T   67 (249)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~-------~~~k~~~~~~~~p~~~~~~R~~---~a~i~~ll~~~~~~--~~~~~~---~~~-~   67 (249)
                      .|+++.++++.+..++.+       ...+.+.+.|.+|.....-.+.   .+..++-+.+....  +++...   .+. +
T Consensus       173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~  252 (345)
T PRK13499        173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLA  252 (345)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcccc
Confidence            588899999999999998       6666665667887766655554   44444122222221  211110   111 2


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhh---cc-cchHHHHHHHHHHHhhcccceeeccccceeehHHH
Q 025675           68 ----VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSA---IV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMV  139 (249)
Q Consensus        68 ----~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~i---i~-~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l  139 (249)
                          +++...-.+.|+.-...+.+|..|-+..+.+.+.+   +. .+.-++..+-+. ++||+=+-.++--+..++|+++
T Consensus       253 ~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vl  331 (345)
T PRK13499        253 KPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVV  331 (345)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHH
Confidence                33333334445554777888899988887766666   65 444466666666 5899877322233447889999


Q ss_pred             hhhhhhhhhh
Q 025675          140 SIAGALTVTL  149 (249)
Q Consensus       140 ~~~Gv~li~~  149 (249)
                      .+.|++++..
T Consensus       332 iI~g~~lig~  341 (345)
T PRK13499        332 IILAANIVGL  341 (345)
T ss_pred             HHHHHHHHhh
Confidence            9999887653

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.58  E-value=0.03  Score=43.85  Aligned_cols=105  Identities=17%  Similarity=0.158  Sum_probs=73.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhccc-chHHHH
Q 025675           33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVD-LTPAFT  111 (249)
Q Consensus        33 ~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~-~~Pv~~  111 (249)
                      +|..-+++-+..+.+. +..+....+++.. ++.+... .+...=|++|...-.+..+..++.+++++..+.- -+-+..
T Consensus        29 s~~~as~i~~~~G~i~-~~i~~~~~~~~~~-~~~~~~p-~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~s  105 (138)
T PF04657_consen   29 SPLVASFISFGVGFIL-LLIILLITGRPSL-ASLSSVP-WWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIAS  105 (138)
T ss_pred             ccHHHHHHHHHHHHHH-HHHHHHHhccccc-chhccCC-hHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            5999999999999998 7777666554321 2221111 2344467788888888899999999999888865 444444


Q ss_pred             HHHHHH----HhhcccceeeccccceeehHHHhhhhhhh
Q 025675          112 FILALI----SRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (249)
Q Consensus       112 ~~ls~~----~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~l  146 (249)
                      .++..+    .-+++++.+      |++|+.+.++|+.+
T Consensus       106 l~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen  106 LLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence            555553    245777777      99999999999853

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.95  E-value=0.048  Score=48.20  Aligned_cols=73  Identities=19%  Similarity=0.385  Sum_probs=62.8

Q ss_pred             HHHHHHHH-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccC
Q 025675           74 IFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKG  152 (249)
Q Consensus        74 ~~~~g~~~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~  152 (249)
                      ....|++- ......-|.++.+.|++..+.+.++.-+...+++..+++||+++.      -.+|+.++++|-.+++. +.
T Consensus        66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~-ha  138 (335)
T KOG2922|consen   66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI-HA  138 (335)
T ss_pred             HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE-ec
Confidence            44556666 677777788999999999999999999999999999999999999      99999999999987763 34


Q ss_pred             C
Q 025675          153 P  153 (249)
Q Consensus       153 ~  153 (249)
                      |
T Consensus       139 P  139 (335)
T KOG2922|consen  139 P  139 (335)
T ss_pred             C
Confidence            4

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=95.91  E-value=0.011  Score=52.41  Aligned_cols=68  Identities=24%  Similarity=0.384  Sum_probs=60.2

Q ss_pred             HHHHHH-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675           76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (249)
Q Consensus        76 ~~g~~~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~  149 (249)
                      +.|+.- .....+.+.++.+.|++..+.+....-++..+++..++|||++++      .++|+.+++.|..++..
T Consensus        54 ~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   54 WIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE
Confidence            345554 667788899999999999999999999999999999999999999      99999999999987763

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=95.49  E-value=0.12  Score=44.89  Aligned_cols=180  Identities=16%  Similarity=0.106  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhhhhcccchHHHHHH
Q 025675           35 FVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGY-SSPTLSSAIVDLTPAFTFI  113 (249)
Q Consensus        35 ~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~-~~a~~a~ii~~~~Pv~~~~  113 (249)
                      ..+++.++++-+.- =++..--. ...+ ++.+.|++..  .+..+ +....+-++++++ ++...=.++-.-.++-.+.
T Consensus        34 NLITFaqFlFia~e-Glif~skf-~~~k-~kiplk~Y~i--~V~mF-F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~  107 (330)
T KOG1583|consen   34 NLITFAQFLFIATE-GLIFTSKF-FTVK-PKIPLKDYAI--TVAMF-FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMI  107 (330)
T ss_pred             eehHHHHHHHHHHh-ceeeeccc-cccC-CCCchhhhhe--ehhee-eeeeeeccceeeecccceEEEEEecCcHHHHHH
Confidence            56778888777665 33332111 1122 5666665332  22222 4555666788887 4655556667788999999


Q ss_pred             HHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 025675          114 LALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY  193 (249)
Q Consensus       114 ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~  193 (249)
                      +++++.+.|-+.+      |+..+++.-+|+++.+..+.++...-. +.-++++...+..-+.+|+.+...+-+.-|...
T Consensus       108 ~g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~~~-~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mg  180 (330)
T KOG1583|consen  108 LGWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRSKL-SGLDSGSAQSDFFWWLIGIALLVFALLLSAYMG  180 (330)
T ss_pred             HHHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhhhh-cccccCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999      999999999999988765443222100 000112222333456889999988888888888


Q ss_pred             HHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHhhcC
Q 025675          194 IVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAERN  231 (249)
Q Consensus       194 v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~~  231 (249)
                      +.|+..-|++. ++-+..+|.=..    .+|..++..+|
T Consensus       181 iyqE~~Y~kyGKh~~EalFytH~L----sLP~Flf~~~d  215 (330)
T KOG1583|consen  181 IYQETTYQKYGKHWKEALFYTHFL----SLPLFLFMGDD  215 (330)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHh----ccchHHHhcch
Confidence            88888877653 356777776543    45555555444

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.02  E-value=0.041  Score=46.76  Aligned_cols=73  Identities=16%  Similarity=0.234  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675           70 IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (249)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~  148 (249)
                      .+..+.+.++.+++.|.+.+.-+.+-+|-..++++.+--.|+++.|+++++.+++.|      +|+|..+.|.|...=.
T Consensus       240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence            345567778888999999999999999999999999999999999999999999999      9999999999986533

>TIGR00803 nst UDP-galactose transporter

Probab=94.71  E-value=0.083  Score=44.31  Aligned_cols=63  Identities=14%  Similarity=0.209  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhh
Q 025675           77 LGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL  145 (249)
Q Consensus        77 ~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~  145 (249)
                      ..+.++..+.+..+-+++.++..-+......++++.+++.++++|+++..      ++.|+.+.+.|+.
T Consensus       158 ~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~  220 (222)
T TIGR00803       158 VGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF  220 (222)
T ss_pred             HHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence            33444667778889999999999999999999999999999999999999      9999999988864

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=94.65  E-value=0.46  Score=41.07  Aligned_cols=215  Identities=12%  Similarity=0.009  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 025675            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (249)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (249)
                      ++++.+++.+.+|.+++-.|..- . -|++.+-.+-.....+. -+......+   . ++..    .+-++=|.+.+..+
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~-~-gDg~~fQw~~~~~i~~~-g~~v~~~~~---~-p~f~----p~amlgG~lW~~gN   69 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFD-T-GDGFFFQWVMCSGIFLV-GLVVNLILG---F-PPFY----PWAMLGGALWATGN   69 (254)
T ss_pred             CchhHHHHHHHhcccceeeEecc-C-CCcHHHHHHHHHHHHHH-HHHHHHhcC---C-Ccce----eHHHhhhhhhhcCc
Confidence            46788899999999999999753 3 47755554444333333 222222211   1 2222    12223344446667


Q ss_pred             HHHHHhhcccCchhhhhcccchHHHH-HHHHHH-HhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccc---cC-
Q 025675           86 TCLYVGIGYSSPTLSSAIVDLTPAFT-FILALI-SRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVS---MS-  159 (249)
Q Consensus        86 ~~~~~gl~~~~a~~a~ii~~~~Pv~~-~~ls~~-~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~---~~-  159 (249)
                      .+-.-.++.++.+..-.+-++.-+.+ ...+.+ +++++.+.. ...+...+|++++++|..+..+-|.+..++   .+ 
T Consensus        70 ~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~  148 (254)
T PF07857_consen   70 ILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEE  148 (254)
T ss_pred             eeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCccccccc
Confidence            77778888888888888866543333 333333 444433221 234558899999999988766543321110   00 


Q ss_pred             ----CCCCCCC-------CCC------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-------chh--HH--HH
Q 025675          160 ----SSSNLHN-------ELR------SPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-------EEL--MA--TF  211 (249)
Q Consensus       160 ----~~~~~~~-------~~~------~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~-------~~~--~~--~~  211 (249)
                          .+++++.       ++.      +..++.+.|+++++.+++.|+...+=.....++.+       +++  ..  ..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~  228 (254)
T PF07857_consen  149 TPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFS  228 (254)
T ss_pred             cccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHh
Confidence                0001110       011      11124688999999999999997755454444431       112  22  22


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC
Q 025675          212 ICCVFVTIQSTVVALIAERNP  232 (249)
Q Consensus       212 ~~~~~g~i~~~~~~~~~~~~~  232 (249)
                      -.++.+++.+.....+...++
T Consensus       229 GIfltSt~~F~~Y~~~~rn~P  249 (254)
T PF07857_consen  229 GIFLTSTVYFVIYCIIKRNKP  249 (254)
T ss_pred             hHHHHHHHHHHHHHHhhcCCC
Confidence            334455566666666654333

The region concerned is approximately 280 residues long.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.29  E-value=0.63  Score=36.88  Aligned_cols=135  Identities=14%  Similarity=0.046  Sum_probs=78.6

Q ss_pred             chhHHHHHHHHHHHHHHH-HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH
Q 025675            3 SVGVTAVMVAVECLEVGS-STLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS   81 (249)
Q Consensus         3 ~~~~~~~~l~~~~~wg~~-~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (249)
                      ....++..+.+..+-..- .+-.+..... =+|..-.+..+..+.+. ++.+.+. .++........+...+...=|++|
T Consensus         3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~-~spl~As~isf~vGt~~-L~~l~l~-~~~~~~~a~~~~~pwW~~~GG~lG   79 (150)
T COG3238           3 MYLYLLFAILAGALLPLQAAINGRLARYL-GSPLLASLISFLVGTVL-LLILLLI-KQGHPGLAAVASAPWWAWIGGLLG   79 (150)
T ss_pred             cHHHHHHHHHHhhhhhhHHHHHHHHHHHc-CChHHHHHHHHHHHHHH-HHHHHHH-hcCCCchhhccCCchHHHHccchh
Confidence            344444444444444443 3445544433 36999999999999998 8777776 333321221122223444556666


Q ss_pred             HHHHHHHHHhhcccCchhhhhcc-cchHHHHHHHHHH-Hhh---cccceeeccccceeehHHHhhhhhhh
Q 025675           82 CCVQTCLYVGIGYSSPTLSSAIV-DLTPAFTFILALI-SRM---EKLDLRVQSSLAKSIGTMVSIAGALT  146 (249)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~a~ii~-~~~Pv~~~~ls~~-~~~---Ek~~~~~~~s~~~~~g~~l~~~Gv~l  146 (249)
                      ..+-..-.......++++...+. .-+-+...++-.+ +++   .++++.      |+.|+++.++|+.+
T Consensus        80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~------r~lgi~L~l~gil~  143 (150)
T COG3238          80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLP------RILGILLVLAGILL  143 (150)
T ss_pred             hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHH------HHHHHHHHHHHHHH
Confidence            55555556677777666665553 4555555555443 232   444555      99999999999544

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.23  E-value=0.57  Score=41.28  Aligned_cols=136  Identities=12%  Similarity=0.073  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhHhccCC----CCCCCHHHHHHHHHHHHH
Q 025675            6 VTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT----RPPLTVSIICKIFGLGLI   80 (249)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~   80 (249)
                      ++.++..-..+=|.+...-+...++ ++++..+.+.-.++.++. ........+ ..+    +-+.+.+-+..+++....
T Consensus       173 G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~-~~~~li~qg-~~~~av~F~~~hp~~~~Di~l~s~~  250 (327)
T KOG1581|consen  173 GILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAIL-NGTYLILQG-HLLPAVSFIKEHPDVAFDILLYSTC  250 (327)
T ss_pred             hHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHH-HHHhhhcCC-CCchHHHHHHcChhHHHHHHHHHHh
Confidence            3444444444444555444444433 589999999999998887 666533322 121    123455666778888888


Q ss_pred             HHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675           81 SCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (249)
Q Consensus        81 ~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~  149 (249)
                      |+..|.+.+.-++.-++-.-+.++.+==++.++++.+.+++++++.      +|.|+.+.|.|+.+=+.
T Consensus       251 gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~~  313 (327)
T KOG1581|consen  251 GAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEIL  313 (327)
T ss_pred             hhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHHH
Confidence            8888988888888877777777777888999999999999999999      99999999999876543

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=93.98  E-value=0.26  Score=38.37  Aligned_cols=54  Identities=17%  Similarity=0.188  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh------CCchhHHHHHHHHHHHHHHHHHHHHhhcC
Q 025675          178 GGLVLAAGSFFLSLLYIVQTSIIRE------YPEELMATFICCVFVTIQSTVVALIAERN  231 (249)
Q Consensus       178 G~~~~l~aa~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~g~i~~~~~~~~~~~~  231 (249)
                      |.++++.+.++.|++.+++|+..++      ..++.+...+....+.+.+.|..++.|+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~   60 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGP   60 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            6788999999999999999998776      22479999999999999999999988764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.84  E-value=0.54  Score=41.60  Aligned_cols=137  Identities=14%  Similarity=0.108  Sum_probs=94.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhHhcc----C-CCCCCCHHHHHHHHHHH
Q 025675            5 GVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRN----R-TRPPLTVSIICKIFGLG   78 (249)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~----~-~~~~~~~~~~~~~~~~g   78 (249)
                      .+|.++....+.=.......|.-.+. +.+-+.+.++..+++... +.....+.+..    . .....+...+..+.+-+
T Consensus       157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~-l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc  235 (314)
T KOG1444|consen  157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPP-LLILSFITGELDALSLNFDNWSDSSVLVVMLLSC  235 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHH-HHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence            46777777777777777777776654 467888999999999888 66666554421    1 10112223345566666


Q ss_pred             HHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675           79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (249)
Q Consensus        79 ~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~  148 (249)
                      +.+..-..+-++-.+.+|+...++.....-..+.+...+++++++++.      ..+|+.+++.|-++=.
T Consensus       236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS  299 (314)
T ss_pred             HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence            677666667788888899998888884444444444455677888888      9999999999987654

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=93.46  E-value=0.36  Score=40.84  Aligned_cols=171  Identities=9%  Similarity=0.071  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHH
Q 025675           34 DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFI  113 (249)
Q Consensus        34 p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~  113 (249)
                      -+.+.+.+.+.+.+. ++.+-..+--+.  +..+.|.|..   .+++-...-..--.+++|.+...-+++-++.-+.+..
T Consensus        37 nflll~vQSlvcvv~-l~iLk~l~~~~f--R~t~aK~Wfp---iSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAy  110 (309)
T COG5070          37 NFLLLAVQSLVCVVG-LLILKFLRLVEF--RLTKAKKWFP---ISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAY  110 (309)
T ss_pred             hhHHHHHHHHHHHHH-HHHHHHHhHhhe--ehhhhhhhcC---HHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHh
Confidence            457778888888887 666543322122  1222232222   1222211112224789999999999999999999999


Q ss_pred             HHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 025675          114 LALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY  193 (249)
Q Consensus       114 ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~  193 (249)
                      ....+++.|++..      ......+-+..-..-.  .++...      .     .-..+..+.|.++.......-+.+.
T Consensus       111 gEvl~Fgg~vtsl------~l~SFilMvlSS~va~--w~D~q~------~-----~~~~~~lN~GY~Wm~~NclssaafV  171 (309)
T COG5070         111 GEVLFFGGRVTSL------ELLSFILMVLSSVVAT--WGDQQA------S-----AFKAQILNPGYLWMFTNCLSSAAFV  171 (309)
T ss_pred             hHHHHhcCccchh------hHHHHHHHHHHHHHhc--cchhhH------H-----HHHhcccCCceEEEehhhHhHHHHH
Confidence            9999999999877      5555444333332222  121100      0     0011234568899999999999999


Q ss_pred             HHHHHHHh--hCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 025675          194 IVQTSIIR--EYPEELMATFICCVFVTIQSTVVALIAER  230 (249)
Q Consensus       194 v~~k~~~~--~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  230 (249)
                      ...||..|  +..+ ...++|..+.+.-.+..+.+++|+
T Consensus       172 L~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~ed  209 (309)
T COG5070         172 LIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFED  209 (309)
T ss_pred             HHHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhcc
Confidence            88888755  3444 788999999999888888888765

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=90.55  E-value=0.73  Score=40.15  Aligned_cols=178  Identities=13%  Similarity=0.134  Sum_probs=108.4

Q ss_pred             CCCh--HHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhccc--c
Q 025675           31 GTSD--FVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVD--L  106 (249)
Q Consensus        31 ~~~p--~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~--~  106 (249)
                      |+.|  +.+++.+++.-..+ -+.-... .+..+ +..+||   ....++.+-.....+-.-++.|.+=-.-.++-.  +
T Consensus        70 gfkp~GWylTlvQf~~Ysg~-glie~~~-~~~k~-r~iP~r---tY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKl  143 (367)
T KOG1582|consen   70 GFKPFGWYLTLVQFLVYSGF-GLIELQL-IQTKR-RVIPWR---TYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKL  143 (367)
T ss_pred             cCcccchHHHHHHHHHHHhh-hheEEEe-ecccc-eecchh---HhhhhHhhhhhccccCcCccccccCcHHHHHHhhhh
Confidence            4555  36777777766544 2221111 11111 334554   333334433344444444555543332222222  3


Q ss_pred             hHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 025675          107 TPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGS  186 (249)
Q Consensus       107 ~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa  186 (249)
                      .|+  .+.+.+.-+.|-.+.      ...+..+-..|.++.+..|..               .++ +-...|..+.-.|-
T Consensus       144 iPV--miggifIqGkRY~v~------d~~aA~lm~lGli~FTLADs~---------------~sP-NF~~~Gv~mIsgAL  199 (367)
T KOG1582|consen  144 IPV--MIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLADSQ---------------TSP-NFNLIGVMMISGAL  199 (367)
T ss_pred             hhh--hheeeeeccccccHH------HHHHHHHHHHHHHhhhhcccc---------------cCC-CcceeeHHHHHHHH
Confidence            443  345666767776666      888888889999888865442               112 23467888888888


Q ss_pred             HHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 025675          187 FFLSLLYIVQTSIIREYPE-ELMATFICCVFVTIQSTVVALIAERNPNSWRLK  238 (249)
Q Consensus       187 ~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~  238 (249)
                      +.=|.-.-+|+|..+..+. ..++.+++..+|....+..+...++-++.|+..
T Consensus       200 l~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fc  252 (367)
T KOG1582|consen  200 LADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFC  252 (367)
T ss_pred             HHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHH
Confidence            8888888888888887653 356888999999999888888877666777654

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=90.41  E-value=0.17  Score=43.27  Aligned_cols=75  Identities=16%  Similarity=0.075  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675           72 CKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (249)
Q Consensus        72 ~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~  148 (249)
                      ..-+..|+.....+.+++.+-+..+.+.+--+..+..+...+-+.++++||=++|++.-  .++|+++.++|+.++.
T Consensus       210 ~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~--v~iGiilivvgai~lg  284 (288)
T COG4975         210 WLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVY--VIIGIILIVVGAILLG  284 (288)
T ss_pred             HHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhh--hhhhHHHHHHHhhhhh
Confidence            33456687778889999999999888888777888888888889999999999986532  5677777778877654

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=90.23  E-value=4.5  Score=35.93  Aligned_cols=135  Identities=17%  Similarity=0.144  Sum_probs=87.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHHhHhccCCC------CCC----CHHH
Q 025675            5 GVTAVMVAVECLEVGSSTLNKAAMNKG----TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR------PPL----TVSI   70 (249)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~----~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~------~~~----~~~~   70 (249)
                      .+..+...+.++-|.-+.+++..++++    -+|+...+.-.-.-.+. ++|..+..++....      ...    -++.
T Consensus       164 ~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~-Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv  242 (349)
T KOG1443|consen  164 EGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIG-LLPLSLLFEGLHLITSSSIFRFQDTGLILRV  242 (349)
T ss_pred             hhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHH-HHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence            567778888888888888888887652    25776665555555555 66666655442211      001    1222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhh
Q 025675           71 ICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (249)
Q Consensus        71 ~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~l  146 (249)
                      ...+.+-|.+.++--.+.+.=+..|+.-..++..-.-=+.+.+++....+|+++..      .|.|..++..|+..
T Consensus       243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~  312 (349)
T KOG1443|consen  243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILL  312 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHH
Confidence            22233333333333344555566676666666666666788899999999999988      99999999999865

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=89.95  E-value=5.2  Score=34.28  Aligned_cols=127  Identities=9%  Similarity=-0.023  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-H
Q 025675            5 GVTAVMVAVECLEVGSSTLNKAAMNKG-TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-C   82 (249)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~   82 (249)
                      .++++++.++++-|...+.....++++ .+...-...-+..+.++ .++......+.....+.-.+.+-...+.-++. +
T Consensus       114 ~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~-~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a  192 (244)
T PF04142_consen  114 LGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILF-NLLALLLSDGSAISESGFFHGYSWWVWIVIFLQA  192 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH-HHHHHhcccccccccCCchhhcchHHHHHHHHHH
Confidence            567888888999999999998888763 34444444445555555 44443332221110111111111122222222 5


Q ss_pred             HHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHH
Q 025675           83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTM  138 (249)
Q Consensus        83 ~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~  138 (249)
                      ...+....-+||.+.-.=..-....-+++.+++..+++.+++..      ..+|..
T Consensus       193 ~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~------f~lg~~  242 (244)
T PF04142_consen  193 IGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS------FLLGAA  242 (244)
T ss_pred             HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH------Hhhhee
Confidence            55566667788887777777778888999999999999999887      666654

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=87.48  E-value=0.72  Score=33.98  Aligned_cols=42  Identities=19%  Similarity=0.328  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 025675          187 FFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER  230 (249)
Q Consensus       187 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  230 (249)
                      ++|+.+.+..|+..++.| |...+++++..+++ ..+.....++
T Consensus         1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~   42 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGR   42 (126)
T ss_pred             ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcc
Confidence            468999999999999987 79999999999998 6666666543

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=87.43  E-value=4.4  Score=35.64  Aligned_cols=136  Identities=11%  Similarity=0.174  Sum_probs=90.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHhHh-----ccCC-CCCCCHHHHHH----
Q 025675            5 GVTAVMVAVECLEVGSSTLNKAAM-NKGTSDFVLIVYSNAFAAIFILLPSTFIYY-----RNRT-RPPLTVSIICK----   73 (249)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~-~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~-----~~~~-~~~~~~~~~~~----   73 (249)
                      .+.++.+.++++-+.-+++=..-+ ..+++|.+.+.|..+++.++ +-.+.....     ++.. -++..+.++..    
T Consensus       176 tGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~-~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~  254 (372)
T KOG3912|consen  176 TGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVI-LSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAA  254 (372)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHH-HHHHHHHHhheecCCcCcCCCCcchhhHHHHHHH
Confidence            466888999999999888765444 44799999999999999665 444433321     1111 13444444432    


Q ss_pred             -----HHHHHHHH-HHHHHHH-HHhh---cccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhh
Q 025675           74 -----IFGLGLIS-CCVQTCL-YVGI---GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAG  143 (249)
Q Consensus        74 -----~~~~g~~~-~~~~~~~-~~gl---~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~G  143 (249)
                           .+.+.+.+ ...-.+| +.|+   ++.++++=.++-..-..++.+++.....|++..-      ++.|.++-..|
T Consensus       255 ~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliLi~G  328 (372)
T KOG3912|consen  255 LQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLILIMG  328 (372)
T ss_pred             hcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHHHHH
Confidence                 12222333 2222222 2333   4458888888888888888888999999999998      99999999999


Q ss_pred             hhhh
Q 025675          144 ALTV  147 (249)
Q Consensus       144 v~li  147 (249)
                      +++-
T Consensus       329 i~lY  332 (372)
T KOG3912|consen  329 IILY  332 (372)
T ss_pred             HHHH
Confidence            8753

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=86.08  E-value=2.9  Score=35.53  Aligned_cols=111  Identities=17%  Similarity=0.204  Sum_probs=82.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhHhccCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchH
Q 025675           32 TSDFVLIVYSNAFAAIFILLPSTFIYYRNRT---RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTP  108 (249)
Q Consensus        32 ~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~P  108 (249)
                      .-..+-.++..+++..+ ++.+....+....   ....+-....+.++.|+...+-..+-.+-+.-++.+.-+.+.++.-
T Consensus       183 f~d~dtmfYnNllslPi-L~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNK  261 (309)
T COG5070         183 FKDFDTMFYNNLLSLPI-LLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNK  261 (309)
T ss_pred             cchhhHHHHhhhHHHHH-HHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhh
Confidence            55778899999999999 8887776543211   0112223334566666665555566678888899999999998888


Q ss_pred             HHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675          109 AFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (249)
Q Consensus       109 v~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~  149 (249)
                      .-..+-|.++++|+.++.      ++..+++++...++-..
T Consensus       262 lp~alaGlvffdap~nf~------si~sillGflsg~iYav  296 (309)
T COG5070         262 LPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYAV  296 (309)
T ss_pred             ChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHHH
Confidence            888889999999999999      99999999887665543

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=82.25  E-value=18  Score=26.93  Aligned_cols=113  Identities=18%  Similarity=0.143  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCC----hH--HHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHH
Q 025675            6 VTAVMVAVECLEVGSSTLNKAAMNKGTS----DF--VLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGL   79 (249)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~----p~--~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~   79 (249)
                      -...++.+..+||.+..+.|..... .+    |-  ...+.|-.-.               .   -.+|+.+..+    +
T Consensus         4 ~~~~lvaVgllWG~Tnplirrgs~g-~~~v~~~~~k~~~~lqe~~t---------------l---~l~w~Y~iPF----l   60 (125)
T KOG4831|consen    4 DMDKLVAVGLLWGATNPLIRRGSLG-WDKVKSSSRKIMIALQEMKT---------------L---FLNWEYLIPF----L   60 (125)
T ss_pred             HHHHHHHHHHHHccccHHHHHHHhh-HhhccCchHHHHHHHHHHHH---------------H---HHhHHHHHHH----H
Confidence            4566788999999999999987532 22    21  1111111111               0   1233322221    2


Q ss_pred             HHHHHHHHHHHhhcccCchhhhhcccc-hHHHHHHHHHHHhhccc-ceeeccccceeehHHHhhhhhhhhh
Q 025675           80 ISCCVQTCLYVGIGYSSPTLSSAIVDL-TPAFTFILALISRMEKL-DLRVQSSLAKSIGTMVSIAGALTVT  148 (249)
Q Consensus        80 ~~~~~~~~~~~gl~~~~a~~a~ii~~~-~Pv~~~~ls~~~~~Ek~-~~~~~~s~~~~~g~~l~~~Gv~li~  148 (249)
                      ++-+...+|+.-+++++-+.|+-+.++ .-.|+...+..+ +|+. ..+      .+.|+.+...|+.+++
T Consensus        61 lNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~------a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   61 LNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGL------ALLGTSLIVFGIWLCI  124 (125)
T ss_pred             HHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccce------eehhhhHHhhhhhhee
Confidence            345666788999999999999999874 555666666655 5555 444      8899999999986653

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=82.14  E-value=30  Score=31.24  Aligned_cols=210  Identities=11%  Similarity=0.039  Sum_probs=110.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHhHhccCC----CCCCCHHHHHHHHHHHH
Q 025675            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIV-YSNAFAAIFILLPSTFIYYRNRT----RPPLTVSIICKIFGLGL   79 (249)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~i~~ll~~~~~~~~~~~----~~~~~~~~~~~~~~~g~   79 (249)
                      .+.+...+..+.=|+.++-.|...+  - +.+-.. ....++-+  ++|...-.-.-..    ....+...+....+.|+
T Consensus         7 ~Gii~h~iGg~~~~sfy~P~kkvk~--W-sWEs~Wlv~gi~swl--i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~   81 (344)
T PF06379_consen    7 LGIIFHAIGGFASGSFYVPFKKVKG--W-SWESYWLVQGIFSWL--IVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV   81 (344)
T ss_pred             HHHHHHHHHHHHhhhhccchhhcCC--c-cHHHHHHHHHHHHHH--HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence            4667777888888888888886532  2 223222 23334433  3555433211000    01223334455566677


Q ss_pred             HHHHHHHHHHHhhcccCchhhhhc-ccchHHHHHHHHHHHhhcccc--eeeccccceeehHHHhhhhhhhhhhccCCccc
Q 025675           80 ISCCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLD--LRVQSSLAKSIGTMVSIAGALTVTLYKGPALV  156 (249)
Q Consensus        80 ~~~~~~~~~~~gl~~~~a~~a~ii-~~~~Pv~~~~ls~~~~~Ek~~--~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~  156 (249)
                      +-......|=.+++|.+.+...-+ ..+.-++-.++-.++.++ .+  .....++..++|++++++|+.++....  ..+
T Consensus        82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~-~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG--~~K  158 (344)
T PF06379_consen   82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGT-FDELLATPSGQIVLLGVAVCLIGIAICGKAG--SMK  158 (344)
T ss_pred             HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCc-ccccccCCCchhhhhHHHHHHHHHHHHhHHH--Hhh
Confidence            666666777788888766554333 234444444443333221 11  001124458999999999999876431  111


Q ss_pred             ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH-------Hh-hCCc---hhHHHHHHHHHHHHHHHHHH
Q 025675          157 SMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSI-------IR-EYPE---ELMATFICCVFVTIQSTVVA  225 (249)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~-------~~-~~~~---~~~~~~~~~~~g~i~~~~~~  225 (249)
                            |++..+.....+...|.+.++.+.+.-|++++-...-       .+ ..++   ........+.-|.+.-+...
T Consensus       159 ------e~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc  232 (344)
T PF06379_consen  159 ------EKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYC  232 (344)
T ss_pred             ------hhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHH
Confidence                  1111112223456789999999998888877653221       11 0111   01244455566667777776


Q ss_pred             HHh
Q 025675          226 LIA  228 (249)
Q Consensus       226 ~~~  228 (249)
                      ++.
T Consensus       233 ~~~  235 (344)
T PF06379_consen  233 LIL  235 (344)
T ss_pred             HHH
Confidence            654

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.51
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.49

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.51  E-value=1.1e-07  Score=73.32  Aligned_cols=69  Identities=25%  Similarity=0.263  Sum_probs=52.5

Q ss_pred             HHHHHH-HHHHHHHHHhhcccCchhhhhc-ccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhc
Q 025675           76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY  150 (249)
Q Consensus        76 ~~g~~~-~~~~~~~~~gl~~~~a~~a~ii-~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~  150 (249)
                      .++++. .+++.++..++++.+++.+..+ .++.|+++.++++++++|+++++      +++|+++.++|+.++...
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence            456666 8899999999999999999998 89999999999999999999999      999999999999988643

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.49  E-value=7.4e-07  Score=66.13  Aligned_cols=68  Identities=25%  Similarity=0.267  Sum_probs=62.0

Q ss_pred             HHHHHH-HHHHHHHHHhhcccCchhhhhc-ccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675           76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (249)
Q Consensus        76 ~~g~~~-~~~~~~~~~gl~~~~a~~a~ii-~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~  149 (249)
                      ..+++. ..++.++..++++.|.+.+..+ ..+.|+++.++++++++|+++++      |++|+.+.++|++++..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            456666 8888999999999999999888 79999999999999999999999      99999999999988763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00