Citrus Sinensis ID: 025693

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MRSLTLPWSGLKAHSLPSSASYPKASKSCGSKLFPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPGASCENRNDVDCKNCKMTRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKES
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccHEEcccccccccccccccccccEcccccccccccccHHcccEEEcccEEEEcccccccccccccccccEEEccEEEEEEcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcc
Coil and Loop (DISEMBL)
mrsltlpwsglkahslpssasypkaskscgsklfpfnslcknqtstskklslrnpylnfsrelcrdpgascenrndvdcknckmtRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFasglqsfpflgdlgdiSRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRtfhyvdeilpfrfgqtdlpiddIAAVCLLVYFGVSTLldaastdglksedeqkes
Flexible Loop (DISEMBL)
mrsltlpwsglkahslpssasypKASKSCGSKLFPFNSLCKnqtstskklslrnpYLNFSrelcrdpgascenrndvdcknCKMTRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLdaastdglksedeqkes
Low Complexity Region (SEG)
MRSLTLPWSGLKAHslpssasypkasksCGSKLFPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPGASCENRNDVDCKNCKMTRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGDKTFFIaallaarnsaaTVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKES
Disordered region (IsUnstruct)
******************************************************PYLNFSRELCRD****C*NRNDVDCKNCKMTRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA***************
Disordered Region (DISOPRED)
*******************************************************YLNF**************************************LIKFVMFFGLLTLQGSQT**********************ISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL*****************
Disordered Region (DISEMBL)
MRSLTLPWSGLKAHS*************CGSKLFPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPGASCENRNDVDCKNCKMTRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS*************
Disordered Region (DISPRO)
*****LPWSGLKAHSLPSSASYPKASKSCGSKLFPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPGASCENRNDVDCKNCKMTRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAST************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSLTLPWSGLKAHSLPSSASYPKASKSCGSKLFPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPGASCENRNDVDCKNCKMTRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
Q94AX5	370	GDT1-like protein 1, chlo	yes	no	0.839	0.564	0.550	2e-55
B8AAM2	341	GDT1-like protein 1, chlo	N/A	no	0.518	0.378	0.719	1e-46
Q5NAY7	341	GDT1-like protein 1, chlo	yes	no	0.518	0.378	0.712	2e-46
Q9T0H9	359	GDT1-like protein 2, chlo	no	no	0.357	0.247	0.510	7e-18
Q2R2Z4	347	GDT1-like protein 2, chlo	no	no	0.357	0.256	0.531	8e-18
P52876	206	GDT1-like protein sll0615	N/A	no	0.389	0.470	0.388	5e-11
Q10320	287	GDT1-like protein C17G8.0	yes	no	0.353	0.306	0.397	8e-09
Q9HC07	324	Transmembrane protein 165	yes	no	0.397	0.305	0.376	2e-07
Q9SX28	228	GDT1-like protein 5 OS=Ar	no	no	0.313	0.342	0.379	2e-07
Q9C6M1	230	GDT1-like protein 4 OS=Ar	no	no	0.313	0.339	0.367	1e-06

>sp|Q94AX5|GDT11_ARATH GDT1-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64150 PE=2 SV=2

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/229 (55%), Positives = 147/229 (64%), Gaps = 20/229 (8%)

Query: 40  CKNQTSTSKKLSLRNPYLN-----FSRELCRDPGASCENRNDVDC-----------KNCK 83
           C +        S+RN Y +       R   +  G  C  RND  C           +N  
Sbjct: 38  CVSAYPIPIGFSVRNQYFSRCLTQLRRNESQQLGFRCFQRNDAACYLEKAESEEHDRNLD 97

Query: 84  MTRES--VHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSF-PFLGDLGDISR 140
           +  ES   H+      ++ F+   G + L G+  A AA    +  QS     GDLGDIS 
Sbjct: 98  VLVESSIAHSRREIQRVLMFLAVSGSVALLGTDPAFAASSIPNVTQSLVTSFGDLGDISS 157

Query: 141 GFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVD 200
           GFASAFLLIFFSELGDKTFFIAALLAARNSAATVF GTFGAL  MT+ISV+LGRTFHYVD
Sbjct: 158 GFASAFLLIFFSELGDKTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLGRTFHYVD 217

Query: 201 EILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKES 249
           E+LPFRFG TDLPIDDIAAVCLLVYFGVSTLLDA S +G K+++EQKE+
Sbjct: 218 EVLPFRFGGTDLPIDDIAAVCLLVYFGVSTLLDAVSDEG-KADEEQKEA 265

Arabidopsis thaliana (taxid: 3702)

>sp|B8AAM2|GDT11_ORYSI GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_00941 PE=3 SV=2

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/132 (71%), Positives = 108/132 (81%), Gaps = 3/132 (2%)

Query: 107 LLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGDKTFFIAALLA 166
           +L LQGSQ A+A  +F  G+Q    +GDLGDIS GFASAFLLIFFSELGD+TFFIAALLA
Sbjct: 96  VLMLQGSQQALAGTEFM-GMQDV--VGDLGDISTGFASAFLLIFFSELGDRTFFIAALLA 152

Query: 167 ARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYF 226
           ARNS A +F GTFGALA MT+ISV+LGR FHYVD I+PF FG TD P+DD  A CLLVY+
Sbjct: 153 ARNSGAIIFLGTFGALAVMTIISVVLGRAFHYVDGIIPFSFGGTDFPVDDFLAACLLVYY 212

Query: 227 GVSTLLDAASTD 238
           GV+TLLDAAS D
Sbjct: 213 GVTTLLDAASGD 224

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5NAY7|GDT11_ORYSJ GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0221700 PE=3 SV=2

 Score =  185 bits (470), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/132 (71%), Positives = 108/132 (81%), Gaps = 3/132 (2%)

Query: 107 LLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGDKTFFIAALLA 166
           +L LQGSQ A+A  +F  G+Q    +GDLGDIS GFASAFLLIFFSELGD+TFFIAALLA
Sbjct: 96  VLMLQGSQQALAGTEFM-GMQDV--VGDLGDISTGFASAFLLIFFSELGDRTFFIAALLA 152

Query: 167 ARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYF 226
           ARNS A +F GTFGALA MT+ISV+LGR FHYVD I+PF FG TD P+DD  A CLLVY+
Sbjct: 153 ARNSGAIIFLGTFGALAVMTIISVVLGRAFHYVDGIIPFSFGGTDFPVDDFLAACLLVYY 212

Query: 227 GVSTLLDAASTD 238
           G++TLLDAAS D
Sbjct: 213 GITTLLDAASGD 224

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9T0H9|GDT12_ARATH GDT1-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=At4g13590 PE=1 SV=2

 Score = 90.9 bits (224), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 66/94 (70%), Gaps = 5/94 (5%)

Query: 141 GFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVD 200
           GF +AF LIF SE+GDKTFFIAALLA +     V  G+ GAL+ MT++SV++G+ F  V 
Sbjct: 145 GFTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTILSVVIGKIFQSV- 203

Query: 201 EILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234
              P +F QT LPI + AA+ LL++FG+ ++ DA
Sbjct: 204 ---PAQF-QTTLPIGEYAAIALLMFFGLKSIKDA 233

Arabidopsis thaliana (taxid: 3702)

>sp|Q2R2Z4|GDT12_ORYSJ GDT1-like protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os11g0544500 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 64/94 (68%), Gaps = 5/94 (5%)

Query: 141 GFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVD 200
           GF +AF LIF SE+GDKTFFIAALLA +   A V  G+  AL+ MT++SVI+GR F  V 
Sbjct: 134 GFTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTIVSVIIGRIFQSV- 192

Query: 201 EILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234
              P +F QT LPI + AA+ LL +FG  ++ DA
Sbjct: 193 ---PAQF-QTTLPIGEYAAIALLAFFGFKSIKDA 222

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P52876|Y615_SYNY3 GDT1-like protein sll0615 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0615 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 11/108 (10%)

Query: 142 FASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDE 201
           F +  LLI  SELGDKTFFIA +LA R     V  G  G LAAMT++SV++G+ F +   
Sbjct: 5   FTAGLLLITVSELGDKTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFTF--- 61

Query: 202 ILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKES 249
            LP R+        + A V L + FG   L DA       + +E +++
Sbjct: 62  -LPTRY-------INYAEVALFLIFGTKLLWDARRIKATANLEEMEDA 101

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q10320|YD68_SCHPO GDT1-like protein C17G8.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G8.08c PE=3 SV=1

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 10/98 (10%)

Query: 137 DISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTF 196
           D  R    +  +IF  E+GDKTF +AALLA  NS  TVFAG++ AL  MT++ V+LG   
Sbjct: 45  DFLRSLIFSISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLG--- 101

Query: 197 HYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234
           H    + P +       + DI    L V FG+  L++A
Sbjct: 102 HAAPLLFPRK-------LTDILGGVLFVIFGIKMLMEA 132

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9HC07|TM165_HUMAN Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 59/117 (50%), Gaps = 18/117 (15%)

Query: 134 DLGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILG 193
           +LG I   F +A  +I  SELGDKTFFIAA++A R +  TV AG   AL  MT +SV+ G
Sbjct: 90  NLGFI-HAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFG 148

Query: 194 RTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLK-SEDEQKES 249
               Y   ++P  +           +  L   FG+  L      +GLK S DE +E 
Sbjct: 149 ----YATTVIPRVY-------TYYVSTVLFAIFGIRML-----REGLKMSPDEGQEE 189

Homo sapiens (taxid: 9606)

>sp|Q9SX28|GDT15_ARATH GDT1-like protein 5 OS=Arabidopsis thaliana GN=At1g68650 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 135 LGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILG- 193
           +G + +GF  +  + F SE+GDKTFF AA+LA R     V AG   AL  MT++S  LG 
Sbjct: 1   MGSLLQGFTKSLAMTFLSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGW 60

Query: 194 --------RTFHYVDEILPFRFGQTDL 212
                   +  H++   L F FG   L
Sbjct: 61  AAPNLISRKWTHHITTFLFFGFGLWSL 87

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6M1|GDT14_ARATH GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 135 LGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILG- 193
           +  + +GF  +  + F SE+GDKTFF AA+LA R     V AG   AL  MT++S  LG 
Sbjct: 1   MSSVLQGFTKSLAMTFVSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGW 60

Query: 194 --------RTFHYVDEILPFRFGQTDL 212
                   +  H++  +L F FG   L
Sbjct: 61  AAPNLISRKWTHHITTLLFFGFGLWSL 87

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
255537647	375	Transmembrane protein TPARL, putative [R	0.939	0.624	0.554	2e-71
297742269	393	unnamed protein product [Vitis vinifera]	0.943	0.597	0.545	1e-66
449452426	342	PREDICTED: GDT1-like protein 1, chloropl	0.863	0.628	0.563	1e-63
449533248	234	PREDICTED: GDT1-like protein 1, chloropl	0.851	0.905	0.570	5e-63
225426088	260	PREDICTED: GDT1-like protein 1, chloropl	0.578	0.553	0.819	3e-59
357481519	403	Transmembrane protein [Medicago truncatu	0.867	0.535	0.571	3e-56
359806660	347	uncharacterized protein LOC100809618 [Gl	0.771	0.553	0.597	6e-56
297836959	368	predicted protein [Arabidopsis lyrata su	0.787	0.532	0.609	2e-55
18407980	370	uncharacterized protein [Arabidopsis tha	0.839	0.564	0.550	1e-53
15010676	370	At1g64150/F22C12_10 [Arabidopsis thalian	0.831	0.559	0.558	6e-53

>gi|255537647|ref|XP_002509890.1| Transmembrane protein TPARL, putative [Ricinus communis] gi|223549789|gb|EEF51277.1| Transmembrane protein TPARL, putative [Ricinus communis]

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 162/292 (55%), Positives = 186/292 (63%), Gaps = 58/292 (19%)

Query: 1   MRSLTLPWSGLKAHSLPSSASYPKASKSCGSKLFPFNSLCKNQTSTSKKLSLRNPYLNFS 60
           MRS+TL  S L+    P   S           L P NS  K ++S   KLS RNP L FS
Sbjct: 1   MRSITLSESALRLPPCPKPVS-----------LLPLNSFSKKRSS---KLSFRNPCLTFS 46

Query: 61  R---ELCRD----------PGASCENRNDV-----DCKNCKMTRES-------------- 88
           R   + C            P  S +N N +     DC+N + +RES              
Sbjct: 47  RYSRQWCEYSIQEAFRHFLPMVS-KNFNGLEVRGLDCQNFQASRESMPVLDDICFLDKLS 105

Query: 89  --VHNLANDS---------GLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGD 137
             V ++  D          GL+KF++  G LT QGSQ A A  D A G QS P+LGDLGD
Sbjct: 106 TKVKSIKEDEVAASTTSYGGLLKFMLLVGYLTFQGSQQAFAGTDIAVGSQSIPYLGDLGD 165

Query: 138 ISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFH 197
           IS GFASAFLLIFFSELGDKTFFIAALLAARNSAATVF GTFGALA MT+ISV+LGRTFH
Sbjct: 166 ISTGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFTGTFGALAVMTIISVVLGRTFH 225

Query: 198 YVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKES 249
           YVDEILPFR G+TDLP+DDIAAVCLLVYFGVSTL+DA+S DGLK+EDEQKE+
Sbjct: 226 YVDEILPFRLGETDLPVDDIAAVCLLVYFGVSTLIDASSGDGLKAEDEQKEA 277

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742269|emb|CBI34418.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 155/284 (54%), Positives = 179/284 (63%), Gaps = 49/284 (17%)

Query: 1   MRSLTLPWSGLKAHSLPSSASYPKASKSCGSKLFPFNSLCKNQTSTSKKLSLRNPYLNFS 60
           MR++TL  S L+ HSL S    PK  K   S LF  NS  K   S   KLS + P L FS
Sbjct: 1   MRTITLSESVLRTHSLHSPC--PKPPKFFSSYLFSLNSRVKEHNS---KLSHQYPRLVFS 55

Query: 61  RELCRDPGASC------------ENRNDVD---CKNCKMTRESVHNL------------- 92
           R   R    +C            EN + ++   C N K +++ +HN+             
Sbjct: 56  RFSRRWGENTCGKLFGQFLEKDWENSDGIELRYCWNGKASKQLLHNVDDFGFSDKSPAKI 115

Query: 93  ----------------ANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLG 136
                            +  GL+KF++ FG LTLQ SQ AVA  DFASGLQ   +LGDLG
Sbjct: 116 NYKRENHTTRSIPVLDTSMGGLLKFMLVFGFLTLQDSQQAVAGSDFASGLQLNSYLGDLG 175

Query: 137 DISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTF 196
           DIS GF SAFLLIFFSELGDKTFFIAALLAARNS A VF GTFGALA MT+ISV+LGRTF
Sbjct: 176 DISTGFVSAFLLIFFSELGDKTFFIAALLAARNSGAVVFIGTFGALATMTIISVVLGRTF 235

Query: 197 HYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGL 240
           HYVDEILPFRFG+TDLPIDDIAAVCLLVYFGVSTLL+A S++GL
Sbjct: 236 HYVDEILPFRFGETDLPIDDIAAVCLLVYFGVSTLLEANSSNGL 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452426|ref|XP_004143960.1| PREDICTED: GDT1-like protein 1, chloroplastic-like, partial [Cucumis sativus]

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 134/238 (56%), Positives = 165/238 (69%), Gaps = 23/238 (9%)

Query: 34  FPFNSLCKNQTSTS---KKLSLRNPYLNFSRELCRDPGASCE--NRNDVDCKNCKMTRES 88
           + F+S C+  T+     +K  + + Y +  +E C    +S E   R+     NC+   + 
Sbjct: 1   YRFSSCCRTATTKPWYWRKTEVVSKYYD-HQEPCHHDYSSREVSTRSITILDNCRAPEKP 59

Query: 89  VHNLANDSGL-----------------IKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPF 131
           +   ++  G+                 +KF++  G   LQ SQ A+A  D A+GLQS P 
Sbjct: 60  LAKYSSAEGIHENTDNQKSSSIFSSSFLKFMLLSGFFILQDSQHALAGSDVATGLQSVPL 119

Query: 132 LGDLGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVI 191
           LGDLGDIS GFASAFLLIFFSELGDKTFFIAALLAARNSAATVF GTFGAL AMT+ISV+
Sbjct: 120 LGDLGDISTGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFTGTFGALGAMTIISVV 179

Query: 192 LGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKES 249
           LGRTFHYVDEILPFR G +DLP+DDIAAVCLLVYFGV+TLLDA+S+DGLK+EDEQKE+
Sbjct: 180 LGRTFHYVDEILPFRLGDSDLPVDDIAAVCLLVYFGVTTLLDASSSDGLKAEDEQKEA 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533248|ref|XP_004173588.1| PREDICTED: GDT1-like protein 1, chloroplastic-like, partial [Cucumis sativus]

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 134/235 (57%), Positives = 163/235 (69%), Gaps = 23/235 (9%)

Query: 36  FNSLCKNQTSTS---KKLSLRNPYLNFSRELCRDPGASCE--NRNDVDCKNCKMTRESVH 90
           F+S C+  T+     +K  + + Y +  +E C    +S E   R+     NC+   + + 
Sbjct: 1   FSSCCRTATTKPWYWRKTEVVSKYYD-HQEPCHHDYSSREVSTRSITILDNCRAPEKPLA 59

Query: 91  NLANDSGL-----------------IKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLG 133
             ++  G+                 +KF++  G   LQ SQ A+A  D A+GLQS P LG
Sbjct: 60  KYSSAEGIHENTDNQKSSSIFSSSFLKFMLLSGFFILQDSQHALAGSDVATGLQSVPLLG 119

Query: 134 DLGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILG 193
           DLGDIS GFASAFLLIFFSELGDKTFFIAALLAARNSAATVF GTFGAL AMT+ISV+LG
Sbjct: 120 DLGDISTGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFTGTFGALGAMTIISVVLG 179

Query: 194 RTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKE 248
           RTFHYVDEILPFR G +DLP+DDIAAVCLLVYFGV+TLLDA+S+DGLK+EDEQKE
Sbjct: 180 RTFHYVDEILPFRLGDSDLPVDDIAAVCLLVYFGVTTLLDASSSDGLKAEDEQKE 234

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426088|ref|XP_002272191.1| PREDICTED: GDT1-like protein 1, chloroplastic [Vitis vinifera]

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 118/144 (81%), Positives = 128/144 (88%)

Query: 97  GLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGD 156
           GL+KF++ FG LTLQ SQ AVA  DFASGLQ   +LGDLGDIS GF SAFLLIFFSELGD
Sbjct: 3   GLLKFMLVFGFLTLQDSQQAVAGSDFASGLQLNSYLGDLGDISTGFVSAFLLIFFSELGD 62

Query: 157 KTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDD 216
           KTFFIAALLAARNS A VF GTFGALA MT+ISV+LGRTFHYVDEILPFRFG+TDLPIDD
Sbjct: 63  KTFFIAALLAARNSGAVVFIGTFGALATMTIISVVLGRTFHYVDEILPFRFGETDLPIDD 122

Query: 217 IAAVCLLVYFGVSTLLDAASTDGL 240
           IAAVCLLVYFGVSTLL+A S++GL
Sbjct: 123 IAAVCLLVYFGVSTLLEANSSNGL 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481519|ref|XP_003611045.1| Transmembrane protein [Medicago truncatula] gi|355512380|gb|AES94003.1| Transmembrane protein [Medicago truncatula]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 136/238 (57%), Positives = 165/238 (69%), Gaps = 22/238 (9%)

Query: 15  SLPSSASYPKASKSCGSKL---FPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPGASC 71
           SL SS+ +P  +  C  KL   F F ++ ++ T              F R    D  +  
Sbjct: 82  SLISSSIFPPPTPRCNLKLPPRFQFTNIFRSTT-------------GFVRASEDD--SVA 126

Query: 72  ENRNDVDCKNCKMTRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPF 131
           EN +      C++  ++V +      ++KF++F     LQ +  AVAA DFA+GL S P 
Sbjct: 127 ENSD----SQCQLATQNVSSDDASMTVLKFMLFSAFFALQDAFPAVAASDFATGLNSIPI 182

Query: 132 LGDLGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVI 191
            GD+GD+S GFASAFLLIFFSELGDKTFFIAALLAARNSA+ VF GTFGALAAMTVISV 
Sbjct: 183 FGDVGDLSTGFASAFLLIFFSELGDKTFFIAALLAARNSASVVFVGTFGALAAMTVISVA 242

Query: 192 LGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKES 249
           LGRTFHYVDE+LPFRFG+TDLPIDDIAAVCLLVYFGVSTLLDA+S+D  KS+DEQKE+
Sbjct: 243 LGRTFHYVDELLPFRFGETDLPIDDIAAVCLLVYFGVSTLLDASSSDSQKSDDEQKEA 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806660|ref|NP_001241025.1| uncharacterized protein LOC100809618 [Glycine max] gi|255636411|gb|ACU18544.1| unknown [Glycine max]

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 126/211 (59%), Positives = 151/211 (71%), Gaps = 19/211 (9%)

Query: 52  LRNPYLNFSRELCRDPGASCENRND-----VDCKNCK--MTR---ESVHNLANDSG--LI 99
           L++     S+   + P    +N N+         NCK  + R    S H  + +S   L+
Sbjct: 38  LQSSTFALSQNETKFPTQPYKNSNNSSQSLAHISNCKFPLARPLVSSSHPASTNSSTKLL 97

Query: 100 KFVMFFGLLTLQGSQTAVAAV-DFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGDKT 158
             ++ F  LTLQ S  A+AA  DF++        GD+GD+S GFASAFLLIFFSELGDKT
Sbjct: 98  NSMLLFAFLTLQPSYPALAASSDFST------IFGDIGDLSTGFASAFLLIFFSELGDKT 151

Query: 159 FFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIA 218
           FFIAALLAARNSA  VF GTFGALAAMT+ISV+LGRTFHYVDEILPFRFG+TDLPIDDIA
Sbjct: 152 FFIAALLAARNSAGVVFIGTFGALAAMTLISVVLGRTFHYVDEILPFRFGETDLPIDDIA 211

Query: 219 AVCLLVYFGVSTLLDAASTDGLKSEDEQKES 249
           AVCLLVYFGVSTLLDA+S+DG KS++EQKE+
Sbjct: 212 AVCLLVYFGVSTLLDASSSDGQKSDEEQKEA 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836959|ref|XP_002886361.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332202|gb|EFH62620.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/220 (60%), Positives = 153/220 (69%), Gaps = 24/220 (10%)

Query: 51  SLRNPYLNFSR---ELCRDPGAS----CENRNDVDCKNCKM-TRESVHNL--ANDSG--- 97
           S RN Y  FSR   +L R+        C  RND  C   K  + E++ NL    DS    
Sbjct: 47  SFRNQY--FSRCLTQLRRNESQQLEFRCFRRNDSACYLEKAESEENIRNLDLLVDSSVAH 104

Query: 98  -------LIKFVMFFGLLTLQGSQTAVAAVDFASGLQSF-PFLGDLGDISRGFASAFLLI 149
                  L+KF+   G + L G+  A AA   A+G QS    LGDLGDIS GFASAFLLI
Sbjct: 105 SRRETLRLLKFLAVSGSVALLGNDPAFAASSIANGTQSLVSSLGDLGDISSGFASAFLLI 164

Query: 150 FFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQ 209
           FFSELGDKTFFIAALLAARNSAATVF GTFGAL  MT+ISV+LGRTFHY DE+LPFRFG+
Sbjct: 165 FFSELGDKTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLGRTFHYADEVLPFRFGE 224

Query: 210 TDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKES 249
           TDLPIDDIAAVCLLVYFGVSTLLDA S +G K+++EQKE+
Sbjct: 225 TDLPIDDIAAVCLLVYFGVSTLLDAVSDEG-KADEEQKEA 263

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18407980|ref|NP_564825.1| uncharacterized protein [Arabidopsis thaliana] gi|308191633|sp|Q94AX5.2|GDT11_ARATH RecName: Full=GDT1-like protein 1, chloroplastic; Flags: Precursor gi|332196081|gb|AEE34202.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/229 (55%), Positives = 147/229 (64%), Gaps = 20/229 (8%)

Query: 40  CKNQTSTSKKLSLRNPYLN-----FSRELCRDPGASCENRNDVDC-----------KNCK 83
           C +        S+RN Y +       R   +  G  C  RND  C           +N  
Sbjct: 38  CVSAYPIPIGFSVRNQYFSRCLTQLRRNESQQLGFRCFQRNDAACYLEKAESEEHDRNLD 97

Query: 84  MTRES--VHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSF-PFLGDLGDISR 140
           +  ES   H+      ++ F+   G + L G+  A AA    +  QS     GDLGDIS 
Sbjct: 98  VLVESSIAHSRREIQRVLMFLAVSGSVALLGTDPAFAASSIPNVTQSLVTSFGDLGDISS 157

Query: 141 GFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVD 200
           GFASAFLLIFFSELGDKTFFIAALLAARNSAATVF GTFGAL  MT+ISV+LGRTFHYVD
Sbjct: 158 GFASAFLLIFFSELGDKTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLGRTFHYVD 217

Query: 201 EILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKES 249
           E+LPFRFG TDLPIDDIAAVCLLVYFGVSTLLDA S +G K+++EQKE+
Sbjct: 218 EVLPFRFGGTDLPIDDIAAVCLLVYFGVSTLLDAVSDEG-KADEEQKEA 265

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15010676|gb|AAK73997.1| At1g64150/F22C12_10 [Arabidopsis thaliana] gi|23505909|gb|AAN28814.1| At1g64150/F22C12_10 [Arabidopsis thaliana]

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 128/229 (55%), Positives = 150/229 (65%), Gaps = 22/229 (9%)

Query: 35  PFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPGASCENRNDVDC-----------KNCK 83
           P     +NQ+ +     LR    N S++L    G  C  RND  C           +N  
Sbjct: 45  PIGFSVRNQSFSRCLTQLRR---NESQQL----GFRCFQRNDAACYLEKAESEEHDRNLD 97

Query: 84  MTRES--VHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSF-PFLGDLGDISR 140
           +  ES   H+      ++ F+   G + L G+  A AA    +  QS     GDLGDIS 
Sbjct: 98  VLVESSIAHSRREIQRVLMFLAVSGSVALLGTDPAFAASSIPNVTQSLVTSFGDLGDISS 157

Query: 141 GFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVD 200
           GFASAFLLIFFSELGDKTFFIAALLAARNSAATVF GTFGAL  MT+ISV+LGRTFHYVD
Sbjct: 158 GFASAFLLIFFSELGDKTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLGRTFHYVD 217

Query: 201 EILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKES 249
           E+LPFRFG TDLPIDDIAAVCLLVYFGVSTLLDA S +G K+++EQKE+
Sbjct: 218 EVLPFRFGGTDLPIDDIAAVCLLVYFGVSTLLDAVSDEG-KADEEQKEA 265

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2024628	370	AT1G64150 [Arabidopsis thalian	0.726	0.489	0.556	3.8e-46
TAIR|locus:2140872	359	AT4G13590 [Arabidopsis thalian	0.357	0.247	0.457	9.5e-16
WB|WBGene00021847	297	Y54F10AL.1 [Caenorhabditis ele	0.257	0.215	0.442	1.2e-06
POMBASE|SPAC17G8.08c	287	SPAC17G8.08c "human TMEM165 ho	0.397	0.344	0.324	1.4e-05
ZFIN|ZDB-GENE-030131-3222	305	tmem165 "transmembrane protein	0.281	0.229	0.44	1.6e-05
MGI|MGI:894407	323	Tmem165 "transmembrane protein	0.393	0.303	0.353	0.00016
RGD|1306983	323	Tmem165 "transmembrane protein	0.393	0.303	0.353	0.00016
TAIR|locus:2026879	228	AT1G68650 "AT1G68650" [Arabido	0.236	0.258	0.372	0.00028
UNIPROTKB|F1P1B3	254	TMEM165 "Uncharacterized prote	0.393	0.385	0.344	0.00029
UNIPROTKB|B4DHW1	261	TMEM165 "cDNA FLJ60544, highly	0.265	0.252	0.408	0.0004

TAIR|locus:2024628 AT1G64150 [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 109/196 (55%), Positives = 126/196 (64%)

Query:    68 GASCENRNDVDC-----------KNCKMTRES--VHNLANDSGLIKFVMFFGLLTLQGSQ 114
             G  C  RND  C           +N  +  ES   H+      ++ F+   G + L G+ 
Sbjct:    71 GFRCFQRNDAACYLEKAESEEHDRNLDVLVESSIAHSRREIQRVLMFLAVSGSVALLGTD 130

Query:   115 TAVAAVDFASGLQSF-PFLGDLGDISRGFASAFLLIFFSELGDKTFFIXXXXXXXXXXXT 173
              A AA    +  QS     GDLGDIS GFASAFLLIFFSELGDKTFFI           T
Sbjct:   131 PAFAASSIPNVTQSLVTSFGDLGDISSGFASAFLLIFFSELGDKTFFIAALLAARNSAAT 190

Query:   174 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233
             VF GTFGAL  MT+ISV+LGRTFHYVDE+LPFRFG TDLPIDDIAAVCLLVYFGVSTLLD
Sbjct:   191 VFVGTFGALGIMTIISVVLGRTFHYVDEVLPFRFGGTDLPIDDIAAVCLLVYFGVSTLLD 250

Query:   234 AASTDGLKSEDEQKES 249
             A S +G K+++EQKE+
Sbjct:   251 AVSDEG-KADEEQKEA 265

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2140872 AT4G13590 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 9.5e-16, P = 9.5e-16
 Identities = 43/94 (45%), Positives = 60/94 (63%)

Query:   141 GFASAFLLIFFSELGDKTFFIXXXXXXXXXXXTVFAGTFGALAAMTVISVILGRTFHYVD 200
             GF +AF LIF SE+GDKTFFI            V  G+ GAL+ MT++SV++G+ F  V 
Sbjct:   145 GFTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTILSVVIGKIFQSV- 203

Query:   201 EILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234
                P +F QT LPI + AA+ LL++FG+ ++ DA
Sbjct:   204 ---PAQF-QTTLPIGEYAAIALLMFFGLKSIKDA 233

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

WB|WBGene00021847 Y54F10AL.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 132 (51.5 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 31/70 (44%), Positives = 42/70 (60%)

Query:   137 DIS--RGFASAFLLIFFSELGDKTFFIXXXXXXXXXXXTVFAGTFGALAAMTVISVILGR 194
             DIS   GF ++F +I  SELGDKT+FI           TVF+G  GALA MTV+S  LG 
Sbjct:    62 DISFYHGFLASFSVIVVSELGDKTWFIAVIMSMRHSRLTVFSGAMGALALMTVLSACLG- 120

Query:   195 TFHYVDEILP 204
                ++ +++P
Sbjct:   121 ---WITQVIP 127

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

POMBASE|SPAC17G8.08c SPAC17G8.08c "human TMEM165 homolog" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 123 (48.4 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 36/111 (32%), Positives = 52/111 (46%)

Query:   137 DISRGFASAFLLIFFSELGDKTFFIXXXXXXXXXXXTVFAGTFGALAAMTVISVILGRTF 196
             D  R    +  +IF  E+GDKTF +           TVFAG++ AL  MT++ V+LG   
Sbjct:    45 DFLRSLIFSISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLG--- 101

Query:   197 HYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAST-DGLKS-EDE 245
             H    + P +       + DI    L V FG+  L++A    D  +S  DE
Sbjct:   102 HAAPLLFPRK-------LTDILGGVLFVIFGIKMLMEAKEVMDSKESMSDE 145

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-3222 tmem165 "transmembrane protein 165" [Danio rerio (taxid:7955)]

 Score = 123 (48.4 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 33/75 (44%), Positives = 39/75 (52%)

Query:   130 PFLGDLGDISRGFASAFLLIFFSELGDKTFFIXXXXXXXXXXXTVFAGTFGALAAMTVIS 189
             P  G+LG I   FA+A  +I  SELGDKTFFI           TV AG   AL  MT +S
Sbjct:    66 PNKGNLGFI-HAFAAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLS 124

Query:   190 VILGRTFHYVDEILP 204
             V+ G    Y   I+P
Sbjct:   125 VLFG----YATTIIP 135

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:894407 Tmem165 "transmembrane protein 165" [Mus musculus (taxid:10090)]

 Score = 115 (45.5 bits), Expect = 0.00016, P = 0.00016
 Identities = 41/116 (35%), Positives = 53/116 (45%)

Query:   134 DLGDISRGFASAFLLIFFSELGDKTFFIXXXXXXXXXXXTVFAGTFGALAAMTVISVILG 193
             +LG I   F +A  +I  SELGDKTFFI           TV AG   ALA MT +SV+ G
Sbjct:    90 NLGFI-HAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFG 148

Query:   194 RTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLK-SEDEQKE 248
                 Y   ++P  +           +  L   FG+  L      +GLK S DE +E
Sbjct:   149 ----YATTVIPRVYTY-------YVSTALFAIFGIRML-----REGLKMSPDEGQE 188

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1306983 Tmem165 "transmembrane protein 165" [Rattus norvegicus (taxid:10116)]

 Score = 115 (45.5 bits), Expect = 0.00016, P = 0.00016
 Identities = 41/116 (35%), Positives = 53/116 (45%)

Query:   134 DLGDISRGFASAFLLIFFSELGDKTFFIXXXXXXXXXXXTVFAGTFGALAAMTVISVILG 193
             +LG I   F +A  +I  SELGDKTFFI           TV AG   ALA MT +SV+ G
Sbjct:    90 NLGFI-HAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFG 148

Query:   194 RTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLK-SEDEQKE 248
                 Y   ++P  +           +  L   FG+  L      +GLK S DE +E
Sbjct:   149 ----YATTVIPRVYTY-------YVSTALFAIFGIRML-----REGLKMSPDEGQE 188

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2026879 AT1G68650 "AT1G68650" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 0.00028, P = 0.00028
 Identities = 22/59 (37%), Positives = 30/59 (50%)

Query:   135 LGDISRGFASAFLLIFFSELGDKTFFIXXXXXXXXXXXTVFAGTFGALAAMTVISVILG 193
             +G + +GF  +  + F SE+GDKTFF             V AG   AL  MT++S  LG
Sbjct:     1 MGSLLQGFTKSLAMTFLSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLG 59

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1P1B3 TMEM165 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 111 (44.1 bits), Expect = 0.00029, P = 0.00029
 Identities = 40/116 (34%), Positives = 52/116 (44%)

Query:   134 DLGDISRGFASAFLLIFFSELGDKTFFIXXXXXXXXXXXTVFAGTFGALAAMTVISVILG 193
             +LG I   F +A  +I  SELGDKTFFI           TV AG   AL  MT +SV+ G
Sbjct:    20 NLGFI-HAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFG 78

Query:   194 RTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLK-SEDEQKE 248
                 Y   ++P  +           +  L   FG+  L      +GLK S DE +E
Sbjct:    79 ----YATTVIPRVYTY-------YVSTALFAIFGIRML-----REGLKMSPDEGQE 118

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|B4DHW1 TMEM165 "cDNA FLJ60544, highly similar to Transmembrane protein TPARL" [Homo sapiens (taxid:9606)]

 Score = 110 (43.8 bits), Expect = 0.00040, P = 0.00040
 Identities = 29/71 (40%), Positives = 36/71 (50%)

Query:   134 DLGDISRGFASAFLLIFFSELGDKTFFIXXXXXXXXXXXTVFAGTFGALAAMTVISVILG 193
             +LG I   F +A  +I  SELGDKTFFI           TV AG   AL  MT +SV+ G
Sbjct:    27 NLGFI-HAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFG 85

Query:   194 RTFHYVDEILP 204
                 Y   ++P
Sbjct:    86 ----YATTVIP 92

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5NAY7	GDT11_ORYSJ	No assigned EC number	0.7121	0.5180	0.3782	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
pfam01169	78	pfam01169, UPF0016, Uncharacterized protein family	1e-15
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	2e-13
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	2e-07

>gnl|CDD|216341 pfam01169, UPF0016, Uncharacterized protein family UPF0016

 Score = 69.0 bits (170), Expect = 1e-15
 Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 142 FASAFLLIFFSELGDKTFFIAALLAARNSAAT--VFAGTFGALAAMTVISVILGRTF 196
           F ++FLLIF +ELGDKT      LAAR S +   VF G   ALA  T+++V+LGR  
Sbjct: 1   FLTSFLLIFLAELGDKTQLATIALAARYSRSPWAVFLGATLALALATLLAVLLGRWL 57

This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Length = 78

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 10/93 (10%)

Query: 142 FASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDE 201
              + L++  +E+GDKT  IA LLA R     VFAG   AL AM  ++V++G   H    
Sbjct: 4   LLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVG---HAAAS 60

Query: 202 ILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234
           +LP R           A+  L + F V  L++ 
Sbjct: 61  LLPER-------PLAWASGVLFLAFAVWMLIED 86

Length = 190

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 142 FASAFLLIFFSELGDKTFFIAALLAAR-NSAATVFAGTFGALAAMTVISVILGRTFHYVD 200
           F + F+  F +ELGDKT      LAA  +S   VFAGT   +   +V++V+LG+      
Sbjct: 102 FVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIA--- 158

Query: 201 EILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDG 239
                  G+    +    A  L + F +  L       G
Sbjct: 159 -------GKLPERLLRFIAALLFLIFALVLLWQVFEALG 190

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
KOG2881	294	consensus Predicted membrane protein [Function unk	99.92
PF01169	78	UPF0016: Uncharacterized protein family UPF0016; I	99.89
COG2119	190	Predicted membrane protein [Function unknown]	99.87
COG2119	190	Predicted membrane protein [Function unknown]	99.85
KOG2881	294	consensus Predicted membrane protein [Function unk	99.71
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	96.78
COG4280	236	Predicted membrane protein [Function unknown]	96.19
PRK11469	188	hypothetical protein; Provisional	95.97
COG1971	190	Predicted membrane protein [Function unknown]	93.31
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	92.51
COG4300	205	CadD Predicted permease, cadmium resistance protei	90.58
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	88.62
TIGR00779	193	cad cadmium resistance transporter (or sequestrati	86.5
PRK10229	206	threonine efflux system; Provisional	84.35
TIGR00948	177	2a75 L-lysine exporter.	82.85
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	81.16

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=99.92  E-value=1.4e-25  Score=204.87  Aligned_cols=103  Identities=38%  Similarity=0.639  Sum_probs=95.2

Q ss_pred             cchhHHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhH
Q 025693          136 GDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPID  215 (249)
Q Consensus       136 ~~~~~aFltAFllIFLAElGDKTQLaTalLAaR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il  215 (249)
                      +++..+|..+|.+||++|+||||||++++|||||++..||.|++.||++||++++++|+..   +..+|+++       +
T Consensus        63 ~s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aa---p~lipr~~-------T  132 (294)
T KOG2881|consen   63 SSFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAA---PNLIPRKY-------T  132 (294)
T ss_pred             HHHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhh---hhhchHHH-------H
Confidence            5688999999999999999999999999999999999999999999999999999999865   57899998       8


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCchhhhhc
Q 025693          216 DIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKE  248 (249)
Q Consensus       216 ~~iaaiLFl~FGl~tL~ea~~~~~~~~eeE~~e  248 (249)
                      +++++++|++||+|||+|++++.+.+.+||++|
T Consensus       133 ~~~~t~LF~iFGlkmL~eg~~~~~~~~~eE~eE  165 (294)
T KOG2881|consen  133 YYLATALFLIFGLKMLKEGWEMSPSEGQEELEE  165 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCccchhhHHH
Confidence            999999999999999999999776666666665

>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities

Probab=99.89  E-value=8e-24  Score=160.80  Aligned_cols=76  Identities=43%  Similarity=0.603  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHhcc--CCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHH
Q 025693          142 FASAFLLIFFSELGDKTFFIAALLAARN--SAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAA  219 (249)
Q Consensus       142 FltAFllIFLAElGDKTQLaTalLAaR~--~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~ia  219 (249)
                      |+++|.++|++|+|||||++|+.||+||  +||.|++|+++|+++++++++++|+++   .+++|+++       +++++
T Consensus         1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l---~~~ip~~~-------i~~~~   70 (78)
T PF01169_consen    1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWL---ASRIPERY-------IKWVA   70 (78)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCHHH-------HHHHH
Confidence            6789999999999999999999999999  789999999999999999999999976   68999998       99999


Q ss_pred             HHHHHHHH
Q 025693          220 VCLLVYFG  227 (249)
Q Consensus       220 aiLFl~FG  227 (249)
                      +++|++||
T Consensus        71 ~~lFl~fG   78 (78)
T PF01169_consen   71 GALFLLFG   78 (78)
T ss_pred             HHHHHHHC
Confidence            99999997

These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane

>COG2119 Predicted membrane protein [Function unknown]

Probab=99.87  E-value=6.5e-22  Score=172.79  Aligned_cols=124  Identities=24%  Similarity=0.284  Sum_probs=98.7

Q ss_pred             chhhHHHHHHHHHhhhccchhhhhcccccCCCCCcCCCCCccchhHHHHHHHHHHHHhhcCcHHHHHHHHHHhccCC-ce
Q 025693           95 DSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSA-AT  173 (249)
Q Consensus        95 ~~~~~~~~~~~~~l~l~~~~~~~~~~d~~~~~~~~~~~g~~~~~~~aFltAFllIFLAElGDKTQLaTalLAaR~~~-~~  173 (249)
                      +...+++.....|+.....+.-.+..|   .++..+     .+-+..|+++|+++|++|||||||++|++||++|+. |.
T Consensus        63 ~~~~~~~~~~~~Flafav~~l~edk~~---~~e~~~-----~~~~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~  134 (190)
T COG2119          63 PERPLAWASGVLFLAFAVWMLIEDKED---DEEAQA-----ASPRGVFVTTFITFFLAELGDKTQIATIALAADYHSPWA  134 (190)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcccccc---cccccc-----cccccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCcee
Confidence            344555656666666666644333333   222211     122569999999999999999999999999999885 99


Q ss_pred             eehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025693          174 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS  236 (249)
Q Consensus       174 VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~  236 (249)
                      ||+|+.+|++++++++|++|+++   ++++|.|.       ++.+++++|++||+..+|+...
T Consensus       135 V~~Gt~lg~~l~s~laVl~G~~i---a~ki~~r~-------l~~~aallFl~fal~~~~~~~~  187 (190)
T COG2119         135 VFAGTTLGMILASVLAVLLGKLI---AGKLPERL-------LRFIAALLFLIFALVLLWQVFE  187 (190)
T ss_pred             eehhhHHHHHHHHHHHHHHHHHH---HccCCHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999965   69999998       8999999999999999998654

>COG2119 Predicted membrane protein [Function unknown]

Probab=99.85  E-value=2e-21  Score=169.70  Aligned_cols=90  Identities=34%  Similarity=0.455  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHH
Q 025693          140 RGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAA  219 (249)
Q Consensus       140 ~aFltAFllIFLAElGDKTQLaTalLAaR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~ia  219 (249)
                      ++++.+.++|+++|+|||||+++++||+||+||+||.|+.+|++.||.+++++|++.   +..+|+++       .+|++
T Consensus         2 ~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~---~~~~~~~~-------~~~~~   71 (190)
T COG2119           2 EALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAA---ASLLPERP-------LAWAS   71 (190)
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH---hccCchhH-------HHHHH
Confidence            578899999999999999999999999999999999999999999999999999865   67889998       89999


Q ss_pred             HHHHHHHHHHHHHhhhcCCC
Q 025693          220 VCLLVYFGVSTLLDAASTDG  239 (249)
Q Consensus       220 aiLFl~FGl~tL~ea~~~~~  239 (249)
                      +.+|++||+|+++|+-.+++
T Consensus        72 ~~~Flafav~~l~edk~~~~   91 (190)
T COG2119          72 GVLFLAFAVWMLIEDKEDDE   91 (190)
T ss_pred             HHHHHHHHHHHhcccccccc
Confidence            99999999999998655444

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=99.71  E-value=6.7e-18  Score=154.73  Aligned_cols=87  Identities=26%  Similarity=0.345  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHH
Q 025693          139 SRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIA  218 (249)
Q Consensus       139 ~~aFltAFllIFLAElGDKTQLaTalLAaR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~i  218 (249)
                      ...|+.+|.++|++|||||+|++|++||++.+++.|++|+.+|+.+||+++|+.|+.+   +++|+.|.       +.++
T Consensus       206 spifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~l---AskIS~rt-------Vt~~  275 (294)
T KOG2881|consen  206 SPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYL---ASKISVRT-------VTLI  275 (294)
T ss_pred             cHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHH---hhhheeEE-------EEEe
Confidence            4699999999999999999999999999999999999999999999999999999954   78999987       8999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 025693          219 AVCLLVYFGVSTLLDAA  235 (249)
Q Consensus       219 aaiLFl~FGl~tL~ea~  235 (249)
                      ++++|++||+..++.+.
T Consensus       276 ggi~Fi~Fgl~~i~~~~  292 (294)
T KOG2881|consen  276 GGILFIIFGLVYIFQGF  292 (294)
T ss_pred             cchhHHHHHHHHHhcCC
Confidence            99999999999988653

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=96.78  E-value=0.0029  Score=55.65  Aligned_cols=51  Identities=20%  Similarity=0.340  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 025693          180 GALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGL  240 (249)
Q Consensus       180 lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~~~~~  240 (249)
                      ....+|+.++.++|+.+   .+++|.++       .+|+++++++++|+||++|++..+++
T Consensus        38 ~~~~~~~~lg~~~G~~~---~~~i~~~~-------~~~ig~~iLi~iG~~mi~~~~~~~~~   88 (206)
T TIGR02840        38 VISGLFIFISMLLGKFL---AKFLPPKV-------TEILGAFILIAIGIWIIYNAFRPKKE   88 (206)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHhchhh-------HHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            33458899999999876   57888877       79999999999999999999875543

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>COG4280 Predicted membrane protein [Function unknown]

Probab=96.19  E-value=0.024  Score=51.68  Aligned_cols=64  Identities=22%  Similarity=0.334  Sum_probs=53.6

Q ss_pred             HHHHHHhc--cCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025693          161 IAALLAAR--NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA  235 (249)
Q Consensus       161 aTalLAaR--~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~  235 (249)
                      .++..+-.  ++...-+.|+.+|+++.-.++.++|+.+    ..+|-.+       +++++|++.+.||..-++.+.
T Consensus        21 ~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L----~lvPln~-------lqiv~gvLLllFG~rw~Rsav   86 (236)
T COG4280          21 GAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL----YLVPLNY-------LQIVSGVLLLLFGYRWIRSAV   86 (236)
T ss_pred             HHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce----eeeechH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            34444433  5566889999999999999999999987    4789888       899999999999999988873

>PRK11469 hypothetical protein; Provisional

Probab=95.97  E-value=0.008  Score=52.47  Aligned_cols=47  Identities=13%  Similarity=0.196  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 025693          183 AAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGL  240 (249)
Q Consensus       183 ~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~~~~~  240 (249)
                      .+|+.++-.+|+.+   .+++|. +       .+|++++++++.|+||++|+++.+++
T Consensus        48 ~~m~~~g~~~G~~l---~~~i~~-~-------~~~i~~~lL~~lG~~mi~e~~~~~~~   94 (188)
T PRK11469         48 TLTPLIGWGMGMLA---SRFVLE-W-------NHWIAFVLLIFLGGRMIIEGFRGADD   94 (188)
T ss_pred             HHHHHHHHHHHHHH---HHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            67788888889876   356654 4       79999999999999999999875544

>COG1971 Predicted membrane protein [Function unknown]

Probab=93.31  E-value=0.078  Score=47.34  Aligned_cols=51  Identities=14%  Similarity=0.307  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCch
Q 025693          182 LAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSE  243 (249)
Q Consensus       182 L~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~~~~~~~e  243 (249)
                      .++|-.++-+.|+.+   ++++ ..+       .+|++++++++.|+||++|+++.++++.+
T Consensus        47 ~~i~pliG~~~g~~~---s~~i-~~~-------~~wigf~lL~~lG~~mI~e~f~~~~~~~~   97 (190)
T COG1971          47 QAIMPLIGWFIGKFL---STFI-AEW-------AHWIGFVLLIILGLKMIIEGFKNEEDEFV   97 (190)
T ss_pred             HHHHHHHHHHHHHHH---HHHH-HHH-------HHHHHHHHHHHHHHHHHHHHhchhhcchh
Confidence            345666777777655   2222 333       79999999999999999999997765544

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=92.51  E-value=0.44  Score=42.28  Aligned_cols=55  Identities=11%  Similarity=0.214  Sum_probs=42.3

Q ss_pred             CCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025693          170 SAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA  235 (249)
Q Consensus       170 ~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~  235 (249)
                      +++.|.+|-.+|..+.-++|.+++..+    ..+|+.|       +--.-|++=+++|++.++.+.
T Consensus        24 ~~~~I~~GqylG~~~Lv~~Sl~~~~~l----~~ip~~w-------iLGlLGliPI~lGi~~l~~~~   78 (191)
T PF03596_consen   24 RRRQIVIGQYLGFTILVLASLLGAFGL----LFIPPEW-------ILGLLGLIPIYLGIKALFSGE   78 (191)
T ss_pred             ChhhhhhhHHHHHHHHHHHHHHHHHHH----HhCCHHH-------HHHHHHHHHHHHHHHHHHcCC
Confidence            368999999999988888888887655    4788777       433456777999999887543

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]

Probab=90.58  E-value=1.6  Score=39.57  Aligned_cols=81  Identities=14%  Similarity=0.235  Sum_probs=52.1

Q ss_pred             cHHHHHHHHHHhc---cCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHH
Q 025693          156 DKTFFIAALLAAR---NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL  232 (249)
Q Consensus       156 DKTQLaTalLAaR---~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~  232 (249)
                      |--=+..+.+|.+   ...+.+++|=.+|.+..-+.+.++.-    +.+.+|+++       +--.-|++=++.|+|.++
T Consensus        18 D~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~~a~----v~~fvp~e~-------I~glLGLIPi~LGik~l~   86 (205)
T COG4300          18 DLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLLFAF----VLNFVPEEW-------ILGLLGLIPIYLGIKVLI   86 (205)
T ss_pred             HHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHHHHHHH----HHhhCcHHH-------HHHHHhHHHHHHhhHHhh
Confidence            4444445555554   33589999988776655555444432    236789888       444557777999999999


Q ss_pred             hhhcCCCCCchhhhh
Q 025693          233 DAASTDGLKSEDEQK  247 (249)
Q Consensus       233 ea~~~~~~~~eeE~~  247 (249)
                      .+..++|++++||.+
T Consensus        87 ~~d~d~e~~~~e~L~  101 (205)
T COG4300          87 LGDDDGEEEAKEELA  101 (205)
T ss_pred             cccCcCchhhhHHHH
Confidence            877755555555544

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=88.62  E-value=1.3  Score=36.90  Aligned_cols=72  Identities=15%  Similarity=0.121  Sum_probs=50.8

Q ss_pred             HHHHHHHhccCC---ceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025693          160 FIAALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS  236 (249)
Q Consensus       160 LaTalLAaR~~~---~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~  236 (249)
                      +..+-.++++++   +.+.+|...+-++...++++....+   .+..|.-     ..++++++++.++++|+.+++++.+
T Consensus        12 ~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l---~~~~~~~-----~~~l~~~G~~~L~~lg~~~~~~~~~   83 (191)
T PF01810_consen   12 LLVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSAL---LKSSPWL-----FMILKLLGALYLLYLGYKLLRSKFS   83 (191)
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhChHH-----HHHHHHHHHHHHHHHHHHHHhcccC
Confidence            445556667664   5778888888888877777666544   2223322     2458999999999999999998766


Q ss_pred             CCC
Q 025693          237 TDG  239 (249)
Q Consensus       237 ~~~  239 (249)
                      .+.
T Consensus        84 ~~~   86 (191)
T PF01810_consen   84 SKS   86 (191)
T ss_pred             cch
Confidence            554

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein

Probab=86.50  E-value=1.9  Score=38.57  Aligned_cols=55  Identities=13%  Similarity=0.317  Sum_probs=40.0

Q ss_pred             ccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025693          168 RNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD  233 (249)
Q Consensus       168 R~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~e  233 (249)
                      +++++.|.+|-.+|..+.-++|++.+..+    ..+|+.|       +--.-|++=+++|+|-+++
T Consensus        21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~gl----~~iP~~w-------IlGlLGliPI~lGi~~l~~   75 (193)
T TIGR00779        21 RKEYKDIYIGQYLGSIILILVSLLLAFGV----NLIPEKW-------VLGLLGLIPIYLGIKVAIK   75 (193)
T ss_pred             CCCeeEEEEeHHHHHHHHHHHHHHHHHHH----HhCCHHH-------HHhHHhHHHHHHHHHHHhc
Confidence            56789999999999887777777755433    4788877       4233455559999998886

These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).

>PRK10229 threonine efflux system; Provisional

Probab=84.35  E-value=4.9  Score=34.27  Aligned_cols=76  Identities=16%  Similarity=0.145  Sum_probs=50.6

Q ss_pred             HhhcCcHHHHHHHHHHhccCC---ceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHH
Q 025693          151 FSELGDKTFFIAALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFG  227 (249)
Q Consensus       151 LAElGDKTQLaTalLAaR~~~---~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FG  227 (249)
                      ..--|- ..+.++--+.++++   ....+|...|.++..+++++.-..+   -...|.-.     .++++++++..+++|
T Consensus        16 ~~sPGP-~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~l---l~~~p~~~-----~~l~~~Ga~yLlylg   86 (206)
T PRK10229         16 LMSPGP-DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLI---LEKMAWLH-----TIIMVGGGLYLCWMG   86 (206)
T ss_pred             hcCCCc-hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHH-----HHHHHHHHHHHHHHH
Confidence            333465 66667777777774   4667888888888766655544333   12334332     357899988889999


Q ss_pred             HHHHHhhh
Q 025693          228 VSTLLDAA  235 (249)
Q Consensus       228 l~tL~ea~  235 (249)
                      +.+++++.
T Consensus        87 ~~~~~~~~   94 (206)
T PRK10229         87 YQMLRGAL   94 (206)
T ss_pred             HHHHHhcc
Confidence            99998753

>TIGR00948 2a75 L-lysine exporter

Probab=82.85  E-value=3.7  Score=34.29  Aligned_cols=67  Identities=10%  Similarity=0.024  Sum_probs=44.0

Q ss_pred             HHHHHhccCC-ceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025693          162 AALLAARNSA-ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS  236 (249)
Q Consensus       162 TalLAaR~~~-~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~  236 (249)
                      ++..++++++ +.+.+|..+|.++...++++.-..+   -+..|.-.     .++++++++..+++|+.+++.+.+
T Consensus        12 vi~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~l---l~~~p~~~-----~~l~~~Ga~YLlylg~~~~r~~~~   79 (177)
T TIGR00948        12 VLRQGIRREHVLLIVALCCICDLVLIAAGVFGVAAL---LAASPILL-----AVLTWGGALFLLWYGFLAAKTAWR   79 (177)
T ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCHHHH-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444555443 4677888888888777666554433   23344333     347899999889999999997643

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=81.16  E-value=5.8  Score=33.02  Aligned_cols=21  Identities=24%  Similarity=0.153  Sum_probs=18.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhh
Q 025693          214 IDDIAAVCLLVYFGVSTLLDA  234 (249)
Q Consensus       214 il~~iaaiLFl~FGl~tL~ea  234 (249)
                      .++.+++++|++||+++++++
T Consensus       171 ~i~~~~g~~li~~av~l~~~g  191 (191)
T PF01810_consen  171 WINRISGLLLIGFAVYLLYSG  191 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC
Confidence            378999999999999999864

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	249
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 30/213 (14%), Positives = 69/213 (32%), Gaps = 51/213 (23%)

Query: 76  DVDCKNCK------MTRESVHNLANDSGLIKFVMF-FGLLTLQGSQTAVAAVDFASGLQ- 127
           + DCK+ +      +++E + ++      +   +  F  L  +  +     V+    L+ 
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE--EVLRI 89

Query: 128 SFPFLGD-LGDISRGFASAFLLIFFSELGDKTF-----FI--------------AALLAA 167
           ++ FL   +    R    + +   + E  D+ +     F                ALL  
Sbjct: 90  NYKFLMSPIKTEQRQ--PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 168 RNSAATVFAGTFGA----LAAMTVISVILGRTFHYVDEILPFR-----FGQTDLPIDDIA 218
           R +   +  G  G+    +A    +S       + V   + F+         + P   + 
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLS-------YKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 219 ---AVCLLVYFGVSTLLDAASTDGLKSEDEQKE 248
               +   +    ++  D +S   L+    Q E
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00