Citrus Sinensis ID: 025696

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMEVPCLNVFV
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHcccccccccccccccccccHHHHHccccHHHHHHHHccccEEEEEcccccEEEEEccccccEEEEEEEEHHHHHHHHHHHHHHccccccccEEEEEEHHHHHHHHccccEEEEEccHHHHHHHHHHHHHccccccccccEEcccEEEEEEccEEEEEccccHHHHHHHHHHHHHHcccccccccEEEEEHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHccccEEEEEcccccEEEEEccccccEEEEEEEcHHHHHHHHHHHHHHccHHccccEEEEEEHHHHEEEcccccEEEEcccHHHHHHHHHHHHcccccccccccEEEccEEEEEccccEEEEEEEcHHHHHHHHHHHHHHccccccccEEEEEcHHHHHHHcccccccEEc
Coil and Loop (DISEMBL)
mefpksqvltnpllslstFIHQNCLRLGSELSSRLDDTKRTLsrrlqrpplsvppfaflsqpKQALAATLSSDFVSKTLAGTAVYtvsnssnefvlisdpngaksiglLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGiafrflpdpAQIRNALELKaadvrtgfdgvpvfQSELLVVKkknkrycpvyfqkeDIEKELSKVsrasrgagvsqHIMVGSLEDVLKKmevpclnvfv
Flexible Loop (DISEMBL)
mefpksqvltnpllsLSTFIHQNCLRLGSELSSRLDDTKRTlsrrlqrpplsvppfAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELrsaakvvpitldqvYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQsellvvkkknkrycpvyfqkediekelSKVSrasrgagvsqhiMVGSLEDVLKKMEVPCLNVFV
Low Complexity Region (SEG)
MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMEVPCLNVFV
Disordered region (IsUnstruct)
*********TNPLLSLSTFIHQNCLRLG****************************AFL*****ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDI***************VSQHIMVGSLEDVLKKMEVPCLNV**
Disordered Region (DISOPRED)
****************STFIHQNCLRLG********************************************DFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFL***************VVPITLDQVYMLKVEGIAFRFLPDPAQIR**************DGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKE*****************MVGSLEDVLKKMEVP******
Disordered Region (DISEMBL)
********LTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMEVPCLNVFV
Disordered Region (DISPRO)
********LTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAF********AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMEVPCLNVFV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMEVPCLNVFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
Q9SZB2	268	Protein TIC 22, chloropla	yes	no	0.935	0.869	0.687	4e-89
Q9ZST9	252	Protein TIC 22, chloropla	N/A	no	0.895	0.884	0.684	4e-86
F4J469	313	Protein TIC 22-like, chlo	no	no	0.851	0.677	0.373	2e-30

>sp|Q9SZB2|TIC22_ARATH Protein TIC 22, chloroplastic OS=Arabidopsis thaliana GN=TIC22 PE=1 SV=1

 Score =  327 bits (839), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 167/243 (68%), Positives = 196/243 (80%), Gaps = 10/243 (4%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR---TL-SRRLQRPPLSVPPFAFLS 60
           +S V  NP LS S+FIH  C R  S+LS+R++DTKR   TL +RR   P  + PPFA +S
Sbjct: 2   ESSVKPNPFLSFSSFIHHQCTRFSSDLSARIEDTKRFAETLATRRFSLP--TPPPFASVS 59

Query: 61  QPKQAL-AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAF 119
           Q K      TLS   V+K LAGT+V+TVSN++NEFVLISDP G KSIGLLCFRQEDAEAF
Sbjct: 60  QSKSGTPTTTLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAF 119

Query: 120 LAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFD 179
           LAQ RLRR+EL++ AKVVPITLDQVY+LKVEGI+FRFLPDP QI+NALELK++  + GFD
Sbjct: 120 LAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNALELKSSGNKNGFD 179

Query: 180 GVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKK 239
           GVPVFQSELLVV+KKN+RYCPVYF KEDIE+ELSK +RASRG    Q IMVGSLEDVL+K
Sbjct: 180 GVPVFQSELLVVRKKNRRYCPVYFSKEDIERELSKYTRASRG---DQQIMVGSLEDVLRK 236

Query: 240 MEV 242
           ME+
Sbjct: 237 MEM 239

Involved in protein precursor import into chloroplasts. Imported into the intermembrane space via the Toc translocon. May be involved in the import pathway used by proteins without a cleavable N-terminal pre-sequence.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZST9|TIC22_PEA Protein TIC 22, chloroplastic OS=Pisum sativum GN=TIC22 PE=1 SV=1

 Score =  317 bits (813), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 163/238 (68%), Positives = 188/238 (78%), Gaps = 15/238 (6%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQ 64
           +SQ   NPLLS S FI+ +     + L++RL++TKR     +Q    + P FA       
Sbjct: 2   ESQGQWNPLLSFSRFINHHS----NHLATRLEETKRLAGTLIQSHTRTKPAFA------- 50

Query: 65  ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVR 124
              ATL+ + V+K+LAGT+VYTVSNS NEFVL+SD  GAKSIGLLCFRQEDAEAFLAQVR
Sbjct: 51  ---ATLTPNHVAKSLAGTSVYTVSNSDNEFVLMSDAEGAKSIGLLCFRQEDAEAFLAQVR 107

Query: 125 LRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVF 184
            R+KE R  AKVVPITLDQVYMLKVEGIAFRFLPDP QI+NALEL+AA+ R  FDGVPVF
Sbjct: 108 SRKKEFRGGAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNALELRAAN-RGSFDGVPVF 166

Query: 185 QSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMEV 242
           QS+LLVVKKKNKRYCPVYF KED+E ELSKVSR+S+G GVSQHIMVGS EDVLKKME+
Sbjct: 167 QSDLLVVKKKNKRYCPVYFSKEDLEYELSKVSRSSKGVGVSQHIMVGSFEDVLKKMEL 224

Involved in protein precursor import into chloroplasts. Imported into the intermembrane space via the Toc translocon. May be involved in the import pathway used by proteins without a cleavable N-terminal pre-sequence.

Pisum sativum (taxid: 3888)

>sp|F4J469|TI22L_ARATH Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana GN=TIC22L PE=3 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 128/230 (55%), Gaps = 18/230 (7%)

Query: 29  SELSSRLDDTKRTLSRRLQR-PPLSVPPFAFLSQ-----------PKQALAATLSSDFVS 76
           S L+S  D  K+ L  R+ R      P +A +S            P +     LS+D + 
Sbjct: 57  SALNSFRDQAKQALDSRISRFNSGKAPVWARISDDGGGARAQVTVPIRGSGKGLSADAIE 116

Query: 77  KTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELR-SAAK 135
           + LAG  VY +SNS+ EFVL+S  +  KS+GLL  ++EDAE  L +++     +R   +K
Sbjct: 117 ERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPRMRKEGSK 176

Query: 136 VVPITLDQVYMLKVEGIAFRFLPDPAQIRNAL-ELKAADV-RTGFDGVPVFQSELLVVKK 193
           VV + L +V+ LKV G+AFR +P+  Q++NAL E K A +    F GVPVFQS+ L+++ 
Sbjct: 177 VVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQSKSLILRS 236

Query: 194 KNKRYCPVYFQKEDIEKELSKVSRASRGAGVS---QHIMVGSLEDVLKKM 240
           +N  Y PV+F+KED+EK L + S        +     I V   ED++K M
Sbjct: 237 ENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFEDIVKGM 286

Involved in protein precursor import into chloroplasts.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
224067266	273	predicted protein [Populus trichocarpa]	0.931	0.849	0.807	1e-104
224136756	273	predicted protein [Populus trichocarpa]	0.927	0.846	0.8	1e-103
255538318	272	protein translocase, putative [Ricinus c	0.951	0.871	0.766	1e-101
225458599	277	PREDICTED: protein TIC 22, chloroplastic	0.947	0.851	0.744	2e-99
449446989	277	PREDICTED: protein TIC 22, chloroplastic	0.967	0.870	0.706	1e-93
356519218	260	PREDICTED: uncharacterized protein LOC10	0.927	0.888	0.731	2e-89
147834059	293	hypothetical protein VITISV_009266 [Viti	0.899	0.764	0.661	2e-88
356510391	258	PREDICTED: uncharacterized protein LOC10	0.911	0.879	0.741	2e-87
15234162	268	Tic22-like protein [Arabidopsis thaliana	0.935	0.869	0.687	2e-87
357465499	252	Tic22 [Medicago truncatula] gi|355492082	0.895	0.884	0.684	6e-85

>gi|224067266|ref|XP_002302438.1| predicted protein [Populus trichocarpa] gi|222844164|gb|EEE81711.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/239 (80%), Positives = 211/239 (88%), Gaps = 7/239 (2%)

Query: 10  TNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSV-----PPFAFLSQPKQ 64
           +NPLLSLSTFIH +CLRLG+E S+R+ DT R L   L  PP  +     PPFA +SQPKQ
Sbjct: 7   SNPLLSLSTFIHHHCLRLGAEFSTRISDTTRFLGGNLP-PPRRLCLAPSPPFASVSQPKQ 65

Query: 65  -ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQV 123
            A  A LSSD V+KTLAGTAVYTVSNS+NEFVLISDPNGAKSIGLLCFRQEDAEAFLAQV
Sbjct: 66  TATTANLSSDHVAKTLAGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQV 125

Query: 124 RLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPV 183
           RLRR+ELRS AKVVPITLDQVYMLKVEGIAFRFLPDP QI+NALELKA D+R+GFDGVPV
Sbjct: 126 RLRRRELRSQAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNALELKAVDIRSGFDGVPV 185

Query: 184 FQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMEV 242
           FQS+LLVVKKKNKRYCP+YFQKEDIEKELSKVS+ASRG  +SQHIMVGSLEDVLKKME+
Sbjct: 186 FQSDLLVVKKKNKRYCPIYFQKEDIEKELSKVSKASRGPSLSQHIMVGSLEDVLKKMEI 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136756|ref|XP_002326937.1| predicted protein [Populus trichocarpa] gi|222835252|gb|EEE73687.1| predicted protein [Populus trichocarpa]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/240 (80%), Positives = 210/240 (87%), Gaps = 9/240 (3%)

Query: 10  TNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLS------VPPFAFLSQPK 63
           +NPLLSLST IHQ+CLRLG+E S+R+ DT R L+     PP S       PPFA +SQPK
Sbjct: 7   SNPLLSLSTVIHQHCLRLGAEFSARVSDTTRFLAGNF--PPPSRLRLAPSPPFASVSQPK 64

Query: 64  Q-ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ 122
           Q A  A LSS+ V+K LAGTAVYTVSNS NEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ
Sbjct: 65  QTANTANLSSEHVAKALAGTAVYTVSNSDNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ 124

Query: 123 VRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVP 182
           VRLRR+ELRS AKVVPITLDQVYMLKVEGIAFRFLPDP QI+NALELK+ADVR+GFDGVP
Sbjct: 125 VRLRRRELRSQAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNALELKSADVRSGFDGVP 184

Query: 183 VFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMEV 242
           VFQS+ L+VKKK+KRYCPVYFQKEDIEKELSKVSRASRG G+SQHIMVGSLEDVLKKME+
Sbjct: 185 VFQSDQLIVKKKSKRYCPVYFQKEDIEKELSKVSRASRGPGLSQHIMVGSLEDVLKKMEI 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538318|ref|XP_002510224.1| protein translocase, putative [Ricinus communis] gi|223550925|gb|EEF52411.1| protein translocase, putative [Ricinus communis]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/248 (76%), Positives = 213/248 (85%), Gaps = 11/248 (4%)

Query: 1   MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRL-----QRPPLSVPP 55
           ME  K   L+NPLLSLSTFIHQ+CLRLG+ELS+RL DT   +S  L      R     P 
Sbjct: 1   MEHSK---LSNPLLSLSTFIHQHCLRLGAELSTRLGDTTWAVSNNLLPGLNNRKHRPAPL 57

Query: 56  FAFLSQ-PKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQE 114
           FA +SQ PKQA  + LSS+ V+KTLAGTAVYTVSNS+NEFVL+SDP+GAKSI LLCFRQE
Sbjct: 58  FASVSQQPKQA--SGLSSEHVAKTLAGTAVYTVSNSNNEFVLVSDPDGAKSISLLCFRQE 115

Query: 115 DAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADV 174
           DAEAFLAQVRLRR+ELRS A++VPITLDQVYMLKVEGIAFRFLPDP QI+NALELKA+D 
Sbjct: 116 DAEAFLAQVRLRRRELRSQARIVPITLDQVYMLKVEGIAFRFLPDPVQIKNALELKASDT 175

Query: 175 RTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLE 234
           + GFDGVP+FQSELLVVKKKNKRYCP+YFQKEDIEKELSKVSRASRG G+SQHIMVGSLE
Sbjct: 176 KRGFDGVPIFQSELLVVKKKNKRYCPIYFQKEDIEKELSKVSRASRGPGLSQHIMVGSLE 235

Query: 235 DVLKKMEV 242
           DVL+KME+
Sbjct: 236 DVLRKMEM 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458599|ref|XP_002284687.1| PREDICTED: protein TIC 22, chloroplastic-like isoform 1 [Vitis vinifera] gi|359492043|ref|XP_003634356.1| PREDICTED: protein TIC 22, chloroplastic-like isoform 2 [Vitis vinifera]

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 189/254 (74%), Positives = 213/254 (83%), Gaps = 18/254 (7%)

Query: 1   MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR--------TLSRRLQRPPLS 52
           ME PK    +NPLLS STFIHQ+CLRLG+EL+SRLDDT+R         L R L   PLS
Sbjct: 1   MEPPKP---SNPLLSFSTFIHQHCLRLGAELASRLDDTRRLAGNWPPPALRRSL---PLS 54

Query: 53  VPPFAFLSQ----PKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGL 108
             PFA +SQ     K+ L   LSSD V+K+LAGTAVYTVSNS+NEFVLISDPNG KSIGL
Sbjct: 55  SLPFASMSQEARGAKRDLGVALSSDHVAKSLAGTAVYTVSNSNNEFVLISDPNGIKSIGL 114

Query: 109 LCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALE 168
           LCFRQEDAEAFLAQV+ R +ELRS A+VVPI+LDQVYMLKVEGIAFRFLPDP QI+NALE
Sbjct: 115 LCFRQEDAEAFLAQVQSRTRELRSQARVVPISLDQVYMLKVEGIAFRFLPDPVQIKNALE 174

Query: 169 LKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHI 228
           LKAAD+++GFDGVPVFQS+LLVVKKKN+RYCP+YFQKEDI KELSKVSR+SRG GV+QHI
Sbjct: 175 LKAADIKSGFDGVPVFQSDLLVVKKKNRRYCPIYFQKEDIVKELSKVSRSSRGPGVTQHI 234

Query: 229 MVGSLEDVLKKMEV 242
           MVGSLEDVL+KME 
Sbjct: 235 MVGSLEDVLRKMET 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446989|ref|XP_004141252.1| PREDICTED: protein TIC 22, chloroplastic-like [Cucumis sativus]

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 176/249 (70%), Positives = 205/249 (82%), Gaps = 8/249 (3%)

Query: 1   MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR---TLSRRL----QRPPLSV 53
           ME PK    +NPL+S+S+FIH +C +LG+ELS+RL+DTKR   TL+RR            
Sbjct: 1   MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPT 60

Query: 54  PPFAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQ 113
           P FA L++   ALAATLS D V+K+L GTAVYTVSNS+NEFVLISDPNGAKSIGLLCFR+
Sbjct: 61  PAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRK 120

Query: 114 EDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAAD 173
           EDAE FLAQVR R++ELRS AKVVPITLDQVY+LKVEGIAFRFLPDP Q++NALELKA++
Sbjct: 121 EDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALELKASE 180

Query: 174 VRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSL 233
             + FDGVPVFQS+LL+VKKKNKRYCP+YF KEDIEKEL KV +A R  G SQHIMVGSL
Sbjct: 181 TGSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELLKVPKARR-FGTSQHIMVGSL 239

Query: 234 EDVLKKMEV 242
           EDVLKKME+
Sbjct: 240 EDVLKKMEL 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519218|ref|XP_003528270.1| PREDICTED: uncharacterized protein LOC100802286 [Glycine max]

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 174/238 (73%), Positives = 199/238 (83%), Gaps = 7/238 (2%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQ 64
           +S+  +NPLLS S+FIHQ+C+RLGS+L++RLDDTKR L++      L  P          
Sbjct: 2   ESRGHSNPLLSFSSFIHQHCVRLGSDLATRLDDTKRALAQSHHN--LVFPK----HALAH 55

Query: 65  ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVR 124
           A  ATL S  V+K+L GT+V+TVSNS+NEFVLISDP+GAKSIGLLCFRQEDAEAFLAQVR
Sbjct: 56  AATATLGSQHVAKSLVGTSVFTVSNSNNEFVLISDPDGAKSIGLLCFRQEDAEAFLAQVR 115

Query: 125 LRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVF 184
            R +ELRS A+VVPITLDQVYMLKVEGIAFRFLPDP QIRNALELK  + + GFDGVPVF
Sbjct: 116 SRSRELRSKARVVPITLDQVYMLKVEGIAFRFLPDPVQIRNALELKPVN-KGGFDGVPVF 174

Query: 185 QSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMEV 242
           QSELLVVKK+NKRYCPVYF KEDIE+ELSKVSRASRG GVSQHI VGSLEDVL+KME+
Sbjct: 175 QSELLVVKKRNKRYCPVYFSKEDIEQELSKVSRASRGPGVSQHIAVGSLEDVLRKMEM 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834059|emb|CAN77199.1| hypothetical protein VITISV_009266 [Vitis vinifera]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 178/269 (66%), Positives = 201/269 (74%), Gaps = 45/269 (16%)

Query: 1   MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR--------TLSRRLQRPPLS 52
           ME PK    +NPLLS STFIHQ+CLRLG+EL+SRLDDT+R         L R L   PLS
Sbjct: 1   MEPPKP---SNPLLSFSTFIHQHCLRLGAELASRLDDTRRLAGNWPPPALRRSL---PLS 54

Query: 53  VPPFAFLSQ----PKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGL 108
             PFA +SQ     K+ L   LSSD V+K+LAGTAVYTVSNS+NEFVLISDPNG KSIGL
Sbjct: 55  SLPFASMSQEARGAKRDLGVALSSDHVAKSLAGTAVYTVSNSNNEFVLISDPNGIKSIGL 114

Query: 109 LCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQV------------------------ 144
           LCFRQEDAEAFLAQV+ R +ELRS A+VVPI+LDQV                        
Sbjct: 115 LCFRQEDAEAFLAQVQSRTRELRSQARVVPISLDQVLLMVRMLVNLAGQFAQAVELFRKL 174

Query: 145 ---YMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPV 201
              YMLKVEGIAFRFLPDP QI+NALELKAAD+++GFDGVPVFQS+LLVVKKKN+RYCP+
Sbjct: 175 AHVYMLKVEGIAFRFLPDPVQIKNALELKAADIKSGFDGVPVFQSDLLVVKKKNRRYCPI 234

Query: 202 YFQKEDIEKELSKVSRASRGAGVSQHIMV 230
           YFQKEDI KELSKVSR+SRG GV+QHIM 
Sbjct: 235 YFQKEDIVKELSKVSRSSRGPGVTQHIMT 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510391|ref|XP_003523922.1| PREDICTED: uncharacterized protein LOC100802935 isoform 1 [Glycine max]

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 178/240 (74%), Positives = 201/240 (83%), Gaps = 13/240 (5%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQ 64
           +S+  +NPLLS S+FIHQ+C+RLGS+L++RLDDTKR L++              L  PK 
Sbjct: 2   ESRGHSNPLLSFSSFIHQHCVRLGSDLATRLDDTKRALAQAHHN----------LLFPKH 51

Query: 65  ALAAT--LSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ 122
           ALAAT  L S  V+K+L GT+VYTVSNS+NEFVLISD +GAKSIGLLCFRQEDAEAFLAQ
Sbjct: 52  ALAATSTLGSLHVAKSLVGTSVYTVSNSNNEFVLISDADGAKSIGLLCFRQEDAEAFLAQ 111

Query: 123 VRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVP 182
           VR R +ELRS A+VVPITLDQVYMLKVEGIAFRFLPDP QIRNALELK A+ + GFDGVP
Sbjct: 112 VRSRSRELRSKARVVPITLDQVYMLKVEGIAFRFLPDPVQIRNALELKPAN-KGGFDGVP 170

Query: 183 VFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMEV 242
           VFQSELLVVKKK KRYCPVYF KEDIE+ELSKVSRASRG GVSQHI VGSLEDVL+KME+
Sbjct: 171 VFQSELLVVKKKKKRYCPVYFSKEDIEQELSKVSRASRGPGVSQHIAVGSLEDVLRKMEM 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234162|ref|NP_195061.1| Tic22-like protein [Arabidopsis thaliana] gi|75213572|sp|Q9SZB2.1|TIC22_ARATH RecName: Full=Protein TIC 22, chloroplastic; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 22; Short=AtTIC22; Flags: Precursor gi|4490302|emb|CAB38793.1| Tic22-like protein [Arabidopsis thaliana] gi|7270283|emb|CAB80052.1| Tic22-like protein [Arabidopsis thaliana] gi|26452624|dbj|BAC43395.1| Tic22 like protein [Arabidopsis thaliana] gi|28973025|gb|AAO63837.1| putative Tic22 protein [Arabidopsis thaliana] gi|332660809|gb|AEE86209.1| Tic22-like protein [Arabidopsis thaliana]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 167/243 (68%), Positives = 196/243 (80%), Gaps = 10/243 (4%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR---TL-SRRLQRPPLSVPPFAFLS 60
           +S V  NP LS S+FIH  C R  S+LS+R++DTKR   TL +RR   P  + PPFA +S
Sbjct: 2   ESSVKPNPFLSFSSFIHHQCTRFSSDLSARIEDTKRFAETLATRRFSLP--TPPPFASVS 59

Query: 61  QPKQAL-AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAF 119
           Q K      TLS   V+K LAGT+V+TVSN++NEFVLISDP G KSIGLLCFRQEDAEAF
Sbjct: 60  QSKSGTPTTTLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAF 119

Query: 120 LAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFD 179
           LAQ RLRR+EL++ AKVVPITLDQVY+LKVEGI+FRFLPDP QI+NALELK++  + GFD
Sbjct: 120 LAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNALELKSSGNKNGFD 179

Query: 180 GVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKK 239
           GVPVFQSELLVV+KKN+RYCPVYF KEDIE+ELSK +RASRG    Q IMVGSLEDVL+K
Sbjct: 180 GVPVFQSELLVVRKKNRRYCPVYFSKEDIERELSKYTRASRG---DQQIMVGSLEDVLRK 236

Query: 240 MEV 242
           ME+
Sbjct: 237 MEM 239

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465499|ref|XP_003603034.1| Tic22 [Medicago truncatula] gi|355492082|gb|AES73285.1| Tic22 [Medicago truncatula]

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 163/238 (68%), Positives = 190/238 (79%), Gaps = 15/238 (6%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQ 64
           +SQ   NPLLS S FIHQNC    + L++R +DT++     +Q    + P FA       
Sbjct: 2   ESQGQWNPLLSFSRFIHQNC----NHLATRFEDTRKFAGTLIQSHTRTKPAFA------- 50

Query: 65  ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVR 124
              ATL+S+ V+K+LAGT+VYTVS+S+NEFVL+SD  GAKSIGLLCFRQEDAEAFLAQVR
Sbjct: 51  ---ATLTSNHVAKSLAGTSVYTVSSSNNEFVLMSDAEGAKSIGLLCFRQEDAEAFLAQVR 107

Query: 125 LRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVF 184
            R+ E R  AKVVPITL+QVY+LKVEGIAFRFLPDP QIRNALEL+AA+ + GFDGVPVF
Sbjct: 108 SRKNEFRGNAKVVPITLEQVYLLKVEGIAFRFLPDPLQIRNALELRAAN-KEGFDGVPVF 166

Query: 185 QSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMEV 242
           QSELLVVKKKNKRYCPVYF KEDIE+ELSKVSR S+G GVS+ IMVGS EDVLKKME+
Sbjct: 167 QSELLVVKKKNKRYCPVYFSKEDIEQELSKVSRVSKGPGVSKQIMVGSFEDVLKKMEM 224

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2119146	268	Tic22-IV "translocon at the in	0.935	0.869	0.687	2.2e-80
TAIR|locus:2095213	313	Tic22-III "translocon at the i	0.931	0.741	0.371	1.1e-32
UNIPROTKB|Q55386	286	slr0924 "Slr0924 protein" [Syn	0.710	0.618	0.228	4.2e-07

TAIR|locus:2119146 Tic22-IV "translocon at the inner envelope membrane of chloroplasts 22-IV" [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
 Identities = 167/243 (68%), Positives = 196/243 (80%)

Query:     5 KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR---TLS-RRLQRPPLSVPPFAFLS 60
             +S V  NP LS S+FIH  C R  S+LS+R++DTKR   TL+ RR   P  + PPFA +S
Sbjct:     2 ESSVKPNPFLSFSSFIHHQCTRFSSDLSARIEDTKRFAETLATRRFSLP--TPPPFASVS 59

Query:    61 QPKQAL-AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAF 119
             Q K      TLS   V+K LAGT+V+TVSN++NEFVLISDP G KSIGLLCFRQEDAEAF
Sbjct:    60 QSKSGTPTTTLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAF 119

Query:   120 LAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFD 179
             LAQ RLRR+EL++ AKVVPITLDQVY+LKVEGI+FRFLPDP QI+NALELK++  + GFD
Sbjct:   120 LAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNALELKSSGNKNGFD 179

Query:   180 GVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKK 239
             GVPVFQSELLVV+KKN+RYCPVYF KEDIE+ELSK +RASRG    Q IMVGSLEDVL+K
Sbjct:   180 GVPVFQSELLVVRKKNRRYCPVYFSKEDIERELSKYTRASRG---DQQIMVGSLEDVLRK 236

Query:   240 MEV 242
             ME+
Sbjct:   237 MEM 239

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2095213 Tic22-III "translocon at the inner envelope membrane of chloroplasts 22-III" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 94/253 (37%), Positives = 140/253 (55%)

Query:     6 SQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQR-PPLSVPPFAFLSQ--- 61
             SQ L NPL + +T  + N   + S L+S  D  K+ L  R+ R      P +A +S    
Sbjct:    37 SQTL-NPLFNANT--NNNKPNIFSALNSFRDQAKQALDSRISRFNSGKAPVWARISDDGG 93

Query:    62 --------PKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQ 113
                     P +     LS+D + + LAG  VY +SNS+ EFVL+S  +  KS+GLL  ++
Sbjct:    94 GARAQVTVPIRGSGKGLSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKE 153

Query:   114 EDAEAFLAQVRLRRKELRS-AAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNAL-ELKA 171
             EDAE  L +++     +R   +KVV + L +V+ LKV G+AFR +P+  Q++NAL E K 
Sbjct:   154 EDAETLLKEMKSMDPRMRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKT 213

Query:   172 ADVRTG-FDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQH--- 227
             A +    F GVPVFQS+ L+++ +N  Y PV+F+KED+EK L + S        +     
Sbjct:   214 AGIDDDDFHGVPVFQSKSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGD 273

Query:   228 IMVGSLEDVLKKM 240
             I V   ED++K M
Sbjct:   274 IQVAVFEDIVKGM 286

GO:0009507 "chloroplast" evidence=ISM

GO:0009706 "chloroplast inner membrane" evidence=ISS

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|Q55386 slr0924 "Slr0924 protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 137 (53.3 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 45/197 (22%), Positives = 100/197 (50%)

Query:    58 FLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNE-FVLISDPNGAKSIGLLCFRQEDA 116
             +L    QALA  L ++ V K L G  V+T+ ++     V + + N  K  G+   +QE A
Sbjct:    66 WLGTTLQALA--LPTEEVVKILQGVPVFTIVDAQGAPLVAVGNDN-EKVTGVFISQQE-A 121

Query:   117 EAFLAQVRLRRKELRSAAKVVPITLDQVYML------KVEGIAFRFLPDPAQIRNALELK 170
               FL +++ ++ ++ S   V P++L +V  +      + + + F ++P PAQ++ A ++ 
Sbjct:   122 NGFLQELKKQKPDVGSQVSVQPVSLGEVVKIAQANANQTDPLGFAYVPIPAQVQAAQQMP 181

Query:   171 AADVRTGFDGVPVFQSE------LLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGV 224
              ++ +    GVP+F +        L ++++N++  P + +   I++ + +  +       
Sbjct:   182 NSEYQ---GGVPLFVARGGEDQGYLTIQQENEQIIPFFLEASQIQQMVERFKQEQPAMAD 238

Query:   225 SQHIMVGSLEDVLKKME 241
             S  I V ++E+V+  ++
Sbjct:   239 SIVIDVIAMENVISTLQ 255


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      249       249   0.00080  114 3  11 22  0.42    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  148 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.93u 0.10s 22.03t   Elapsed:  00:00:02
  Total cpu time:  21.93u 0.10s 22.03t   Elapsed:  00:00:02
  Start:  Fri May 10 22:18:18 2013   End:  Fri May 10 22:18:20 2013

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SZB2	TIC22_ARATH	No assigned EC number	0.6872	0.9357	0.8694	yes	no
Q9ZST9	TIC22_PEA	No assigned EC number	0.6848	0.8955	0.8849	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
TIGR00995	270	TIGR00995, 3a0901s06TIC22, chloroplast protein imp	1e-104
pfam04278	270	pfam04278, Tic22, Tic22-like family	4e-74

>gnl|CDD|233226 TIGR00995, 3a0901s06TIC22, chloroplast protein import component, Tic22 family

 Score =  301 bits (773), Expect = e-104
 Identities = 150/240 (62%), Positives = 171/240 (71%), Gaps = 4/240 (1%)

Query: 6   SQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPL--SVPPFAFLSQPK 63
           S    NP LS S FI          L SRL++TKRT    L+      ++P FA  +   
Sbjct: 3   SSFRRNPFLSFSRFIKHKIFVKIKFLLSRLEETKRTAKTLLRIGATLGTIPTFAIGTWLG 62

Query: 64  QAL-AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ 122
             L A TL  + V+K LAGT+V+TVSN+ NEFVL SD +G KSIGLLCFRQEDAEAFLAQ
Sbjct: 63  TTLQALTLPPEEVAKILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQEDAEAFLAQ 122

Query: 123 VRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVP 182
           +R R+ E+ S AKVVPITLDQVY LKVEGI FRFLPDPAQI+NALEL AA+    FDGVP
Sbjct: 123 LRKRKPEVGSQAKVVPITLDQVYKLKVEGIGFRFLPDPAQIKNALELPAAN-SEYFDGVP 181

Query: 183 VFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMEV 242
           VFQS LLVV+KKN+RYCPVYF KEDIE+ELSK  R S G   SQ IMVGS+EDVL KME 
Sbjct: 182 VFQSGLLVVQKKNERYCPVYFSKEDIEQELSKFKRESPGMADSQVIMVGSMEDVLSKMET 241

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein [Transport and binding proteins, Amino acids, peptides and amines]. Length = 270

>gnl|CDD|218002 pfam04278, Tic22, Tic22-like family

 Score =  226 bits (577), Expect = 4e-74
 Identities = 102/239 (42%), Positives = 134/239 (56%), Gaps = 17/239 (7%)

Query: 20  IHQNCLRLGSELSSRLDDTKR-TLSRRLQRPPLSVPPFA---FLSQPKQALAATLSSDFV 75
              + L     L +R     R  L+  L      +P  A    L       A  LS D V
Sbjct: 5   FISHFLPKQIGLIARFKSLSRLALTLGLSGFLGLLPALALGSSLGSFAPTSAFALSEDEV 64

Query: 76  SKTLAGTAVYTVSNSSNEFVLISDPN-GAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAA 134
           ++ LAG  V+T++NS+ E +L+S  N G KS+GLL F QEDAEAFL +++ +  EL S A
Sbjct: 65  AEKLAGVPVFTITNSNGEPLLVSGKNGGGKSVGLLFFSQEDAEAFLKELKKQNPELASGA 124

Query: 135 KVVPITLDQVYML------KVEGIAFRFLPDPAQIRNALEL-KAADVR-TGFDGVPVFQS 186
           KVVPI+L QVY L      KVEG+AFRF+PDP Q++NALEL K        F GVPVFQ+
Sbjct: 125 KVVPISLGQVYKLAQSNQKKVEGLAFRFVPDPKQVKNALELLKKNGQNVNDFRGVPVFQA 184

Query: 187 EL----LVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKME 241
                 L +++ NK+Y P +F KED+++ L +  R       S  I V SLEDVLKKM 
Sbjct: 185 RSGEGYLTIQQDNKQYIPFFFSKEDLQRMLDRAKRQQPDLASSVKIEVISLEDVLKKML 243

The preprotein translocation at the inner envelope membrane of chloroplasts so far involves five proteins: Tic110, Tic55, Tic40, Tic22 (this family) and Tic20. The molecular function of these proteins has not yet been established. Length = 270

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
TIGR00995	270	3a0901s06TIC22 chloroplast protein import componen	100.0
PF04278	274	Tic22: Tic22-like family; InterPro: IPR007378 Chlo	100.0
PF04278	274	Tic22: Tic22-like family; InterPro: IPR007378 Chlo	99.48
TIGR00995	270	3a0901s06TIC22 chloroplast protein import componen	99.41
PF11360	86	DUF3110: Protein of unknown function (DUF3110); In	94.59
PF07179	124	SseB: SseB protein N-terminal domain; InterPro: IP	82.72
PF11042	104	DUF2750: Protein of unknown function (DUF2750); In	82.42
PF11572	103	DUF3234: Protein of unknown function (DUF3234); In	81.02

>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family

Probab=100.00  E-value=1.5e-65  Score=462.43  Aligned_cols=236  Identities=63%  Similarity=0.876  Sum_probs=209.2

Q ss_pred             CCCCCCCcchhhhhHHHHHhhhhhccccccchhhhhhhhcc--CCCCCC-CCCeeeeccc-chhhhhcCChHHHHhhcCC
Q 025696            6 SQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRL--QRPPLS-VPPFAFLSQP-KQALAATLSSDFVSKTLAG   81 (249)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~fA~~~~~-~~~~a~aL~~~~i~ekL~~   81 (249)
                      ++..+|||+++|+||||||+|++++|++|+.+|++ +...|  -+...+ .+..+..+.. ...+|+|||++||+|+|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~mksL~r~~~~lgl~~~~~~~s~l~~~~~alAL~e~eV~ekL~~   81 (270)
T TIGR00995         3 SSFRRNPFLSFSRFIKHKIFVKIKFLLSRLEETKR-TAKTLLRIGATLGTIPTFAIGTWLGTTLQALTLPPEEVAKILAG   81 (270)
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhccchHhhhhhhhccccccccCCHHHHHHHhcC
Confidence            35689999999999999999999999999988877 33333  112222 2222222222 2378999999999999999


Q ss_pred             CcEEEEEcCCCCeEEEeCCCCCeeEEEEeecHHHHHHHHHHHHHhcccccCCeEEEEEehhHHHhhhcCCeeEEEecCHH
Q 025696           82 TAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPA  161 (249)
Q Consensus        82 VPVF~Vtn~~g~plli~~~~g~~~v~~fF~s~~DAqa~L~qlk~~~P~l~~~~kV~~v~L~~vy~l~~~~~~f~fVP~~~  161 (249)
                      ||||+|+|++|+||++++++|.+.++.||++++||++||+++|++||++++++||++|+||+||+++.+++.|+|+|+++
T Consensus        82 VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~qedA~afL~~lk~~~p~l~~~~kV~pvsL~~vYkl~~e~l~F~fiP~~~  161 (270)
T TIGR00995        82 TSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQEDAEAFLAQLRKRKPEVGSQAKVVPITLDQVYKLKVEGIGFRFLPDPA  161 (270)
T ss_pred             CceEEEEcCCCCeEEEECCCCCceEEEEECCHHHHHHHHHHHHhhCccccCCceEEEEEHHHHHHHhhcCccEEEeCCHH
Confidence            99999999999999999998877788777777789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcccCCCCCceEEeecceeeeeCCeEEeeeeecHHHHHHHHHHHHHhcCCCCCcceEEEEeHHHHHHHhh
Q 025696          162 QIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKME  241 (249)
Q Consensus       162 qV~~A~~L~~~~g~~~f~GVPVF~~~~Lti~~~~~~~~PlFF~keDL~~~l~k~~k~~p~~~~~~~I~V~~Le~vi~~m~  241 (249)
                      ||++|++++ ++++++++|||||++++|||+++|++|||+||+||||+++|+++++++|+.+.+++|+|++||+||++|+
T Consensus       162 qV~~A~~ll-~~~~~~~~GVPlF~~~~Lti~~~n~~~iP~FF~Kedlq~~L~~~kkq~p~l~~~~~I~V~~Le~vi~~m~  240 (270)
T TIGR00995       162 QIKNALELP-AANSEYFDGVPVFQSGLLVVQKKNERYCPVYFSKEDIEQELSKFKRESPGMADSQVIMVGSMEDVLSKME  240 (270)
T ss_pred             HHHHHHHHH-hcCccCCCCccEEeecceEEEeCCeEEEeeEeeHHHHHHHHHHHhHhCcCcCCCccEEEEeHHHHHHHHh
Confidence            999999999 4467889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 025696          242 VP  243 (249)
Q Consensus       242 ~~  243 (249)
                      ++
T Consensus       241 ~~  242 (270)
T TIGR00995       241 TS  242 (270)
T ss_pred             cc
Confidence            97

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.

>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane

Probab=100.00  E-value=1.8e-57  Score=413.12  Aligned_cols=234  Identities=44%  Similarity=0.632  Sum_probs=140.3

Q ss_pred             cchhhhhHHHHHhhhhhccccccchhhhhhhhc-cCCCCCCCCCeeeecccch---hhhhcCChHHHHhhcCCCcEEEEE
Q 025696           13 LLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRR-LQRPPLSVPPFAFLSQPKQ---ALAATLSSDFVSKTLAGTAVYTVS   88 (249)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~fA~~~~~~~---~~a~aL~~~~i~ekL~~VPVF~Vt   88 (249)
                      ++++++++|+| .|+++++.+++.++.|.-+.. +.+.|+..+.||..+....   .+++||++++|++||++||||+||
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~a~AL~~~~V~~kL~~VPVF~it   81 (274)
T PF04278_consen    3 LLSFSNFISNP-LRLGAELASRMKSLIRWSATLGLQGSLGLLPSTALGSSLGSSQPSSALALPEEEVEEKLAGVPVFTIT   81 (274)
T ss_dssp             ---------------------------------------------------------------HHHHHHHHTTSEEEEEE
T ss_pred             ccccccccccc-ccccccccccccccchhhhccccccccccCCchhcccccccccccccccCCHHHHHHHhcCceEEEEE
Confidence            67899999999 999999999998887754432 3444677788888777543   359999999999999999999999


Q ss_pred             cCCCCeEEEeCCCC-CeeEEEEeecHHHHHHHHHHHHHhcccccCCeEEEEEehhHHHhh------hcCCeeEEEecCHH
Q 025696           89 NSSNEFVLISDPNG-AKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML------KVEGIAFRFLPDPA  161 (249)
Q Consensus        89 n~~g~plli~~~~g-~~~v~~fF~s~~DAqa~L~qlk~~~P~l~~~~kV~~v~L~~vy~l------~~~~~~f~fVP~~~  161 (249)
                      |++|+||+++++++ ++++++||||++||+++|+++++++|++++++||++|+|++||++      +.+++.|+|||+++
T Consensus        82 n~~G~p~l~~~~~~~~~~v~~~F~s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~~vY~l~~~~~~k~~~~~F~~vP~~~  161 (274)
T PF04278_consen   82 NSQGEPVLVSGPDQGGKSVGLFFFSQQDAEAFLAQLKKSNPELASGAKVVPVSLGKVYQLAQENKKKPEGLQFRFVPDPK  161 (274)
T ss_dssp             -TT--B-----TTS--SEEEEEES-HHHHHHHHHHHHH-SSHHHTT-EEEEEEHHHHHHHHHHTTT-TT-EEEEEE--HH
T ss_pred             CCCCCEEEeccCCCCCceEEEEEecHHHHHHHHHHHhhhCccccCceEEEEecHHHHHHHHHHhhcCCcCceEEEcCCHH
Confidence            99999999999973 679999999999999999999999999999999999999999999      56789999999999


Q ss_pred             HHHHHHHHhhhccc--CCCCCceEEeecc----eeeeeCCeEEeeeeecHHHHHHHHHHHHHhcCCCCCcceEEEEeHHH
Q 025696          162 QIRNALELKAADVR--TGFDGVPVFQSEL----LVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLED  235 (249)
Q Consensus       162 qV~~A~~L~~~~g~--~~f~GVPVF~~~~----Lti~~~~~~~~PlFF~keDL~~~l~k~~k~~p~~~~~~~I~V~~Le~  235 (249)
                      ||++|+++++.+|+  ++|+||||||+++    |+++++|++++|+||+||||+++|+++++++|+++.+++|+|++|++
T Consensus       162 qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~~~Lti~~~~~~~iPlFF~kedL~~~l~k~~kq~p~~~~~~~I~V~~Le~  241 (274)
T PF04278_consen  162 QVEAALELLKKQGQKVKQFQGVPVFYAEGGKGYLTIKQDNKRIIPLFFDKEDLQAALEKAKKQQPDLAKEPKIQVVSLED  241 (274)
T ss_dssp             HHHHHHHHHHTTT---S---S-EEEEEESST-B-EETTTTEEEEEEESSHHHHHHHHHHHTTT-TT-----EEEEEEHHH
T ss_pred             HHHHHHHHHHhcCCCcccCCCeEEEEEcCCCceEEEeeCCeEEEEEEecHHHHHHHHHHHHHhCCCCcCCceEEEEcHHH
Confidence            99999999998887  5799999999888    99999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCcCC
Q 025696          236 VLKKMEVPCLNV  247 (249)
Q Consensus       236 vi~~m~~~~~~~  247 (249)
                      ||++|++++++.
T Consensus       242 vI~~m~~~~d~~  253 (274)
T PF04278_consen  242 VIKTMEESDDSD  253 (274)
T ss_dssp             HHHHHHH---GG
T ss_pred             HHHHHhcCCCCC
Confidence            999999998664

This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.

>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane

Probab=99.48  E-value=1.3e-13  Score=125.99  Aligned_cols=116  Identities=23%  Similarity=0.350  Sum_probs=80.7

Q ss_pred             CCCCeeeecccch-hhhhcCChH--HHHhhcCCCcEEEEEcCCCCeEEEeCCCCCeeEEEEeecHHHHHHHHHHHHHhcc
Q 025696           52 SVPPFAFLSQPKQ-ALAATLSSD--FVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRK  128 (249)
Q Consensus        52 ~~~~fA~~~~~~~-~~a~aL~~~--~i~ekL~~VPVF~Vtn~~g~plli~~~~g~~~v~~fF~s~~DAqa~L~qlk~~~P  128 (249)
                      ....|+++|.+++ ..|+.|..+  +-.+.+.|||||.+.+.+ .+|++.  ++++.++++||+++|+++.++++++++|
T Consensus       150 ~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~-~~Lti~--~~~~~~iPlFF~kedL~~~l~k~~kq~p  226 (274)
T PF04278_consen  150 EGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVPVFYAEGGK-GYLTIK--QDNKRIIPLFFDKEDLQAALEKAKKQQP  226 (274)
T ss_dssp             T-EEEEEE--HHHHHHHHHHHHTTT---S---S-EEEEEESST--B-EET--TTTEEEEEEESSHHHHHHHHHHHTTT-T
T ss_pred             cCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeEEEEEcCCC-ceEEEe--eCCeEEEEEEecHHHHHHHHHHHHHhCC
Confidence            5689999999987 778888333  444889999999999999 777774  3457899999999999999999999999


Q ss_pred             cccCCeEEEEEehhHHHhh--hcCC---eeEEEecCHHHHHHHHHHh
Q 025696          129 ELRSAAKVVPITLDQVYML--KVEG---IAFRFLPDPAQIRNALELK  170 (249)
Q Consensus       129 ~l~~~~kV~~v~L~~vy~l--~~~~---~~f~fVP~~~qV~~A~~L~  170 (249)
                      +++.+.+|.+++|+.+++.  ..++   -.+.|||+.+.+++++++.
T Consensus       227 ~~~~~~~I~V~~Le~vI~~m~~~~d~~~~~i~fiP~~es~~~i~~~~  273 (274)
T PF04278_consen  227 DLAKEPKIQVVSLEDVIKTMEESDDSDLKKIVFIPPGESLEFIQSLK  273 (274)
T ss_dssp             T-----EEEEEEHHHHHHHHHH---GGGGGEEEE--HHHHHHHHTS-
T ss_pred             CCcCCceEEEEcHHHHHHHHhcCCCCCcceEEEECCHHHHHHHHHhc
Confidence            9999999999999999987  2222   6899999999999997653

This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.

>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family

Probab=99.41  E-value=1.1e-12  Score=119.36  Aligned_cols=111  Identities=18%  Similarity=0.261  Sum_probs=93.4

Q ss_pred             CCCeeeecccch-hhhhcCChHHHHhhcCCCcEEEEEcCCCCeEEEeCCCCCeeEEEEeecHHHHHHHHHHHHHhccccc
Q 025696           53 VPPFAFLSQPKQ-ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELR  131 (249)
Q Consensus        53 ~~~fA~~~~~~~-~~a~aL~~~~i~ekL~~VPVF~Vtn~~g~plli~~~~g~~~v~~fF~s~~DAqa~L~qlk~~~P~l~  131 (249)
                      .+.|+++|.+++ ..|+.|... -.+...|||||.+     ++|++..  +++.++||||+++|++++|+++|+++|+++
T Consensus       151 ~l~F~fiP~~~qV~~A~~ll~~-~~~~~~GVPlF~~-----~~Lti~~--~n~~~iP~FF~Kedlq~~L~~~kkq~p~l~  222 (270)
T TIGR00995       151 GIGFRFLPDPAQIKNALELPAA-NSEYFDGVPVFQS-----GLLVVQK--KNERYCPVYFSKEDIEQELSKFKRESPGMA  222 (270)
T ss_pred             CccEEEeCCHHHHHHHHHHHhc-CccCCCCccEEee-----cceEEEe--CCeEEEeeEeeHHHHHHHHHHHhHhCcCcC
Confidence            499999999987 777777622 3455579999999     7778843  356899999999999999999999999999


Q ss_pred             CCeEEEEEehhHHHhh-hc---CC---eeEEEecCHHHHHHHHHHhh
Q 025696          132 SAAKVVPITLDQVYML-KV---EG---IAFRFLPDPAQIRNALELKA  171 (249)
Q Consensus       132 ~~~kV~~v~L~~vy~l-~~---~~---~~f~fVP~~~qV~~A~~L~~  171 (249)
                      .+.+|.+++|+.+++. ..   ++   -.+.|+|+++.+++++++.+
T Consensus       223 ~~~~I~V~~Le~vi~~m~~~~~~~~~~~~I~l~Ps~e~~~~iq~~~~  269 (270)
T TIGR00995       223 DSQVIMVGSMEDVLSKMETSEKDSGWEDQIFIPPGQEAIQHMQSLIA  269 (270)
T ss_pred             CCccEEEEeHHHHHHHHhccCCCCcccceEEECCCHHHHHHHHHHhc
Confidence            9999999999999977 22   22   68889999999999998754

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.

>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function

Probab=94.59  E-value=0.35  Score=37.21  Aligned_cols=72  Identities=15%  Similarity=0.324  Sum_probs=56.0

Q ss_pred             EEEEE----cCCCCeEEEeCCCCCeeEEEEeecHHHHHHHHHHHHHhcccccCCeEEEEEehhHHHhh-hcCCeeEEEec
Q 025696           84 VYTVS----NSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML-KVEGIAFRFLP  158 (249)
Q Consensus        84 VF~Vt----n~~g~plli~~~~g~~~v~~fF~s~~DAqa~L~qlk~~~P~l~~~~kV~~v~L~~vy~l-~~~~~~f~fVP  158 (249)
                      ||+++    +.+++...++..+  +.+.++|=+.+||+.|...|..+.-   ....|..+..+.+..+ ++.|..+++||
T Consensus         1 v~VL~f~~~~~~eGI~si~~~~--~~~Vl~FE~edDA~RYa~lLEAqd~---~~p~Ve~id~~~i~~fC~~~gy~~~iv~   75 (86)
T PF11360_consen    1 VYVLLFNAGTETEGIYSIQNKD--RNVVLMFEDEDDAERYAGLLEAQDF---PDPTVEEIDPEEIEEFCRSAGYEYEIVP   75 (86)
T ss_pred             CEEEEecCCCCCCcEEEEEeCC--CCEEEEEccHHHHHHHHHHHHhcCC---CCCCeEEECHHHHHHHHHHCCceEEEEC
Confidence            56777    3444667776554  5688999999999999999987542   2348999999999999 67789999998


Q ss_pred             CH
Q 025696          159 DP  160 (249)
Q Consensus       159 ~~  160 (249)
                      .-
T Consensus        76 ~g   77 (86)
T PF11360_consen   76 PG   77 (86)
T ss_pred             CC
Confidence            64

>PF07179 SseB: SseB protein N-terminal domain; InterPro: IPR009839 This family consists of several SseB proteins, which appear to be found exclusively in Enterobacteria

Probab=82.72  E-value=2.4  Score=32.77  Aligned_cols=43  Identities=30%  Similarity=0.507  Sum_probs=34.6

Q ss_pred             eeee-eCCeEEeeeeecHHHHHHHHHHHHHhcCCCCCcceEEEEeHHHHHHHhh
Q 025696          189 LVVK-KKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKME  241 (249)
Q Consensus       189 Lti~-~~~~~~~PlFF~keDL~~~l~k~~k~~p~~~~~~~I~V~~Le~vi~~m~  241 (249)
                      .+++ .+|++++|+|-+.+.+.+...    .      ...+.+++..++++.+.
T Consensus        54 ~~~~~~dg~~~lpvFTs~e~l~~~~~----~------~~~~~~~~~~~l~~~~~   97 (124)
T PF07179_consen   54 LTLEDPDGERYLPVFTSWEELEKWYP----D------ERPIIVVPFEDLLEMLL   97 (124)
T ss_pred             EEEEcCCCCEEEEEECCHHHHHhhhc----c------cCceecccHHHHHHHhh
Confidence            3444 688999999999999998866    1      24578889999999987

SseB is known to enhance serine-sensitivity in Escherichia coli [] and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon [].

>PF11042 DUF2750: Protein of unknown function (DUF2750); InterPro: IPR021284 This family is conserved in Proteobacteria

Probab=82.42  E-value=10  Score=29.52  Aligned_cols=72  Identities=22%  Similarity=0.337  Sum_probs=53.5

Q ss_pred             CCcEEEEEcCCCCeEEEeCCCCCeeEEEEeecHHHHHHHHHHHHHhcccccCCeEEEEEehhHHHh-----hhcCCeeEE
Q 025696           81 GTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYM-----LKVEGIAFR  155 (249)
Q Consensus        81 ~VPVF~Vtn~~g~plli~~~~g~~~v~~fF~s~~DAqa~L~qlk~~~P~l~~~~kV~~v~L~~vy~-----l~~~~~~f~  155 (249)
                      .==||++.+.+| .++....++. .+.+|+=+++-|++....       -.++.++..++|+.-.+     |..+++..-
T Consensus        12 ~e~vw~L~~~~g-~~~~~~~~~~-~~~p~W~~~~~A~~~~~~-------ew~~~~~~~I~L~~Fle~wl~~L~~d~~~vg   82 (104)
T PF11042_consen   12 SEEVWGLKDEDG-WVLCDSDEGE-DVLPFWPSKEFAEACATD-------EWADYKPKEISLDEFLEEWLPGLQEDGVLVG   82 (104)
T ss_pred             CCEEEEEEcCCc-EEEeecCCCc-EEEEeCCCHHHHHHHHhc-------ccccCeEEEEEHHHHHHHHhHhHHHCCCEEE
Confidence            345899999999 7777666544 479999999999997654       14568999999999886     356766666


Q ss_pred             EecCHH
Q 025696          156 FLPDPA  161 (249)
Q Consensus       156 fVP~~~  161 (249)
                      +-|+..
T Consensus        83 v~~~~~   88 (104)
T PF11042_consen   83 VFPNPD   88 (104)
T ss_pred             EecCCC
Confidence            666543

The function is not known.

>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function

Probab=81.02  E-value=7.2  Score=30.71  Aligned_cols=56  Identities=25%  Similarity=0.472  Sum_probs=42.2

Q ss_pred             CcEEEEEcCCCCeEEEeCCCCCeeEEEEeecHHHHHHHHHHHHHhcccccCCeEEEEE---ehhHHH
Q 025696           82 TAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPI---TLDQVY  145 (249)
Q Consensus        82 VPVF~Vtn~~g~plli~~~~g~~~v~~fF~s~~DAqa~L~qlk~~~P~l~~~~kV~~v---~L~~vy  145 (249)
                      =|=|++.|..|+-++...- |. ....++.|.++|++|+++    +|++  +.+|.++   .|.++|
T Consensus         7 g~WYVLe~~pGEHLvleal-gq-rls~iWtS~~~A~~F~~~----~p~~--GM~V~~Le~~aLKeaf   65 (103)
T PF11572_consen    7 GTWYVLEDEPGEHLVLEAL-GQ-RLSGIWTSRELAQAFLAR----HPEL--GMRVSPLESWALKEAF   65 (103)
T ss_dssp             SSEEEEESSTT-BEEEEET-TE-EEEEEBSSHHHHHHHHHT----STSS----EEEEE-SHHHHHHH
T ss_pred             cceEEecCCCCceeeHHHH-hh-hHHhheecHHHHHHHHHh----Cccc--CcEeecchhHHHHHHH
Confidence            4679999999999998654 33 488899999999999976    6874  6888887   356666

Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	249
4ev1_A	252	Anabena TIC22; TIC22 fold, chaperon, protein trans	4e-40

>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP} Length = 252

 Score =  137 bits (347), Expect = 4e-40
 Identities = 40/200 (20%), Positives = 80/200 (40%), Gaps = 32/200 (16%)

Query: 70  LSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAK------SIGLLCFRQEDAEAFLAQV 123
           LS   + + L    +Y V+N     +    PN         SI      +++A+AF+ ++
Sbjct: 2   LSEQQIKEKLDSVPIYLVTNEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFINEL 61

Query: 124 RL------RRKELRSAAKVVPITLDQVYML------KVEGIAFRFLPDPAQIRNALEL-- 169
           R       + +E+  + +V  + L  +Y            + F F P   +I+ A++L  
Sbjct: 62  RNAKNKDPKMQEIVKSLQVTAVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDLLR 121

Query: 170 KAADVRTGFDGVPVFQSE--------LLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRG 221
           ++      F  VP+F            + V   N++  P++  K+D +  L +V      
Sbjct: 122 QSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGLLGQVKPKHPK 181

Query: 222 AGVSQHIMVGSLEDVLKKME 241
           A     I V  ++ VL+ ++
Sbjct: 182 A----DIQVLDIDGVLQTLQ 197

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
4ev1_A	252	Anabena TIC22; TIC22 fold, chaperon, protein trans	100.0
4e6z_A	279	Apicoplast TIC22, putative; TIC complex, import pr	100.0
4ev1_A	252	Anabena TIC22; TIC22 fold, chaperon, protein trans	99.47
4e6z_A	279	Apicoplast TIC22, putative; TIC complex, import pr	99.08

>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}

Probab=100.00  E-value=3.9e-50  Score=359.34  Aligned_cols=174  Identities=22%  Similarity=0.366  Sum_probs=163.8

Q ss_pred             CChHHHHhhcCCCcEEEEEcCCCCeEEEeCCCC------CeeEEEEeecHHHHHHHHHHHHH---hcc---cccCCeEEE
Q 025696           70 LSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNG------AKSIGLLCFRQEDAEAFLAQVRL---RRK---ELRSAAKVV  137 (249)
Q Consensus        70 L~~~~i~ekL~~VPVF~Vtn~~g~plli~~~~g------~~~v~~fF~s~~DAqa~L~qlk~---~~P---~l~~~~kV~  137 (249)
                      ||+++|+++|++||||+|||++|+||+++++++      +++|++||||++||++||+++|+   +||   ++++++||+
T Consensus         2 L~e~eV~ekL~~VPVF~Itn~~G~Pll~~~~~~~~~~~~~~~V~~~F~s~~dA~~~L~~lk~~~~~np~~~~~~~~~kV~   81 (252)
T 4ev1_A            2 LSEQQIKEKLDSVPIYLVTNEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFINELRNAKNKDPKMQEIVKSLQVT   81 (252)
T ss_dssp             CCHHHHHHHHTTSEEEEEECTTCCBCEEECCCCTTSCCSCSEEEEEESCHHHHHHHHHHHHHCSSCCHHHHHHHTTCEEE
T ss_pred             CCHHHHHHHhcCCcEEEEECCCCCeEEEecCCccccccCCCeEEEEEecHHHHHHHHHHHHhccccCchhhhhccCceEE
Confidence            899999999999999999999999999998872      46899999999999999999999   999   999999999


Q ss_pred             EEehhHHHhh------hcCCeeEEEecCHHHHHHHHHHhhhccc--CCCCCceEEeec------ceeeeeC--CeEEeee
Q 025696          138 PITLDQVYML------KVEGIAFRFLPDPAQIRNALELKAADVR--TGFDGVPVFQSE------LLVVKKK--NKRYCPV  201 (249)
Q Consensus       138 ~v~L~~vy~l------~~~~~~f~fVP~~~qV~~A~~L~~~~g~--~~f~GVPVF~~~------~Lti~~~--~~~~~Pl  201 (249)
                      +|+||+||++      +.+++.|+|||+++||++|++|++++|+  ++|+|||||+++      +|||+++  |++||||
T Consensus        82 ~vsL~~vyql~~~~~~k~~~l~F~fvP~~~qV~~A~~Ll~~~Gq~~~~f~gVPvF~~~~~~~~~~Lti~~~~~~~~~iPl  161 (252)
T 4ev1_A           82 AVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDLLRQSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPL  161 (252)
T ss_dssp             EEEHHHHHHHHHHTTTCTTCEEEEEECCHHHHHHHHHHHHTTTCCCSCCCSCEEEEEESSTTSCBCCEEETTTTEEEEEE
T ss_pred             EeeHHHHHHHHHhhccCCcCceEEEcCCHHHHHHHHHHHHHcCCCcccCCCccEEEEecCCCCccEEEEeCCCCCEEEee
Confidence            9999999999      3578999999999999999999999887  568899999976      7999999  9999999


Q ss_pred             eecHHHHHHHHHHHHHhcCCCCCcceEEEEeHHHHHHHhhcCCcCC
Q 025696          202 YFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMEVPCLNV  247 (249)
Q Consensus       202 FF~keDL~~~l~k~~k~~p~~~~~~~I~V~~Le~vi~~m~~~~~~~  247 (249)
                      ||+||||+++|+++++++|+    ++|+|++|++||++|++++++.
T Consensus       162 FF~KedL~~~l~~~kkq~P~----~~I~V~~Le~vI~~m~~~~d~~  203 (252)
T 4ev1_A          162 FLSKQDAQGLLGQVKPKHPK----ADIQVLDIDGVLQTLQDKNDTW  203 (252)
T ss_dssp             ESSHHHHHHHHHHHTTTCTT----CEEEEEEHHHHHHHHHHCCCGG
T ss_pred             EecHHHHHHHHHHHHHhCCC----CcEEEeeHHHHHHHHhcCcccc
Confidence            99999999999999999987    8999999999999999998764

>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=6e-45  Score=330.38  Aligned_cols=171  Identities=19%  Similarity=0.294  Sum_probs=152.2

Q ss_pred             hcCChHHHHhhcCCCcEEEEEcCCCCeEEEeCCCCCeeEEEEeecHHHHHHHHHHHHH-hcccccCCeEEEEEehhHHHh
Q 025696           68 ATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRL-RRKELRSAAKVVPITLDQVYM  146 (249)
Q Consensus        68 ~aL~~~~i~ekL~~VPVF~Vtn~~g~plli~~~~g~~~v~~fF~s~~DAqa~L~qlk~-~~P~l~~~~kV~~v~L~~vy~  146 (249)
                      .++++++|+|||++||||+|||++|+||++++++  ++|++||||++||+++|+++++ ++|++++++||++++|++||+
T Consensus        63 ~~~~e~~I~EKL~~VPVF~Itn~~G~Pll~~~~~--~~V~~fF~s~~DA~a~L~el~k~~~~~~~~~~kV~pvsL~kvy~  140 (279)
T 4e6z_A           63 KRYDERPIEEKLEVIPVFLITNYNSSPYIFQENE--KQVCYMFLCPYDAENMLNDMIKYNGMKYNGNIKIHNITMKKAYE  140 (279)
T ss_dssp             -----CCHHHHSTTSEEEEEECTTCCBCCEEETT--EEEEEEESSHHHHHHHHHHHHHHCHHHHTTSCEEEEEEHHHHHH
T ss_pred             hcccHHhHHHHhcCCCEEEEEcCCCCEEEecCCC--CeEEEEECCHHHHHHHHHHHHhccCcccccCceEEEecHHHHHH
Confidence            4899999999999999999999999999998764  5899999999999999999755 558999999999999999998


Q ss_pred             h------------------hcCCeeEEEecCHHHHHHHHHHhhhcccCCCCCceEEeecceeeeeCCeEEeeeeecHHHH
Q 025696          147 L------------------KVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDI  208 (249)
Q Consensus       147 l------------------~~~~~~f~fVP~~~qV~~A~~L~~~~g~~~f~GVPVF~~~~Lti~~~~~~~~PlFF~keDL  208 (249)
                      +                  +.+++.|+|||+++||++|+.+++++|++ ++|||||++++|++++++++++|+||+||||
T Consensus       141 l~~~~~~~~~~~i~~~~~~k~~~l~fr~vP~~~qV~~A~~ll~~~gq~-~~gVPVF~~~~Lti~k~~k~iiPlFF~keDL  219 (279)
T 4e6z_A          141 LMKEFLQLEKMEVNKEDSKKKQNIYWKLISSKRQLQNALYYLSFTKKS-ELMYPVFYAENLYIQKDGSNIIPLFFDLEDL  219 (279)
T ss_dssp             HHHHHHHHHHC----------CCEEEEEECCHHHHHHHHTTSCTTTST-TCCSEEEEETTCCEECSSSEEEEEESSHHHH
T ss_pred             HHhhcccccchhcccccccCCcceeeEecCCHHHHHHHHHHHHhcCCc-CCCccEEEEeeEEEeeCCeEEEeeEecHHHH
Confidence            8                  23579999999999999999999888865 8899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcceEEEEeHHHHHHHhhc
Q 025696          209 EKELSKVSRASRGAGVSQHIMVGSLEDVLKKMEV  242 (249)
Q Consensus       209 ~~~l~k~~k~~p~~~~~~~I~V~~Le~vi~~m~~  242 (249)
                      +++|+++++++|+ ..+++|+|++|+++|..|+.
T Consensus       220 ~~~l~q~~~~~p~-~~~~~I~V~~L~~ll~~~d~  252 (279)
T 4e6z_A          220 KEAIEEQKNKALS-KVDYKIKVLNMVDLIFTEDH  252 (279)
T ss_dssp             HHHHHHHHTTCSS-CCCCCEEEEEHHHHHTCSCC
T ss_pred             HHHHHHhhhcCCC-CCCCceEEEhHHHHHhhCCc
Confidence            9999999999987 45689999999999988754

>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}

Probab=99.47  E-value=4.3e-14  Score=126.35  Aligned_cols=119  Identities=18%  Similarity=0.235  Sum_probs=97.9

Q ss_pred             CCCCeeeecccch-hhhhcCChH--HHHhhcCCCcEEEEEc-CCCCeEEEeCCCCCeeEEEEeecHHHHHHHHHHHHHhc
Q 025696           52 SVPPFAFLSQPKQ-ALAATLSSD--FVSKTLAGTAVYTVSN-SSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRR  127 (249)
Q Consensus        52 ~~~~fA~~~~~~~-~~a~aL~~~--~i~ekL~~VPVF~Vtn-~~g~plli~~~~g~~~v~~fF~s~~DAqa~L~qlk~~~  127 (249)
                      .+..|+++|.+++ ..|+.|..+  +-++.+.|||||.+.. .++++|++...+|++.+++|||+++|++++|+++++++
T Consensus       100 ~~l~F~fvP~~~qV~~A~~Ll~~~Gq~~~~f~gVPvF~~~~~~~~~~Lti~~~~~~~~~iPlFF~KedL~~~l~~~kkq~  179 (252)
T 4ev1_A          100 NRLLFAFKPVDQEIKGAMDLLRQSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGLLGQVKPKH  179 (252)
T ss_dssp             TCEEEEEECCHHHHHHHHHHHHTTTCCCSCCCSCEEEEEESSTTSCBCCEEETTTTEEEEEEESSHHHHHHHHHHHTTTC
T ss_pred             cCceEEEcCCHHHHHHHHHHHHHcCCCcccCCCccEEEEecCCCCccEEEEeCCCCCEEEeeEecHHHHHHHHHHHHHhC
Confidence            4689999999977 777777665  3456788999999995 55578888654446789999999999999999999999


Q ss_pred             ccccCCeEEEEEehhHHHhh--hcCC---eeEEEecCHHHHHHHHHHhhhcc
Q 025696          128 KELRSAAKVVPITLDQVYML--KVEG---IAFRFLPDPAQIRNALELKAADV  174 (249)
Q Consensus       128 P~l~~~~kV~~v~L~~vy~l--~~~~---~~f~fVP~~~qV~~A~~L~~~~g  174 (249)
                      |+    .+|.+++|+.+++.  .+++   -.+.|||+.+.+++++++.+..+
T Consensus       180 P~----~~I~V~~Le~vI~~m~~~~d~~~~~ivfiPs~es~e~i~~~~~~~~  227 (252)
T 4ev1_A          180 PK----ADIQVLDIDGVLQTLQDKNDTWLNQVVLVPSPESREYIRTLPKPPN  227 (252)
T ss_dssp             TT----CEEEEEEHHHHHHHHHHCCCGGGGGEEEECCHHHHHHHHTSCCCC-
T ss_pred             CC----CcEEEeeHHHHHHHHhcCcccccceEEEECCHHHHHHHHhccccCC
Confidence            97    89999999999987  2222   47899999999999999865443

>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}

Probab=99.08  E-value=2.8e-10  Score=103.02  Aligned_cols=110  Identities=16%  Similarity=0.164  Sum_probs=88.8

Q ss_pred             CCCCeeeecccch-hhhhcCChHHHHhhcCCCcEEEEEcCCCCeEEEeCCCCCeeEEEEeecHHHHHHHHHHHHHhcccc
Q 025696           52 SVPPFAFLSQPKQ-ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKEL  130 (249)
Q Consensus        52 ~~~~fA~~~~~~~-~~a~aL~~~~i~ekL~~VPVF~Vtn~~g~plli~~~~g~~~v~~fF~s~~DAqa~L~qlk~~~P~l  130 (249)
                      ....|.++|..++ ..|..+..+.- +.-.|||||.+.+     +++..  +++.++|+||+++|+++.++++++++|. 
T Consensus       162 ~~l~fr~vP~~~qV~~A~~ll~~~g-q~~~gVPVF~~~~-----Lti~k--~~k~iiPlFF~keDL~~~l~q~~~~~p~-  232 (279)
T 4e6z_A          162 QNIYWKLISSKRQLQNALYYLSFTK-KSELMYPVFYAEN-----LYIQK--DGSNIIPLFFDLEDLKEAIEEQKNKALS-  232 (279)
T ss_dssp             CCEEEEEECCHHHHHHHHTTSCTTT-STTCCSEEEEETT-----CCEEC--SSSEEEEEESSHHHHHHHHHHHHTTCSS-
T ss_pred             cceeeEecCCHHHHHHHHHHHHhcC-CcCCCccEEEEee-----EEEee--CCeEEEeeEecHHHHHHHHHHhhhcCCC-
Confidence            4678999999877 67777766643 3467899999953     56644  3457999999999999999999999997 


Q ss_pred             cCCeEEEEEehhHHHhhhcCCeeEEEecCHHHHHHHHHHhh
Q 025696          131 RSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKA  171 (249)
Q Consensus       131 ~~~~kV~~v~L~~vy~l~~~~~~f~fVP~~~qV~~A~~L~~  171 (249)
                      ....+|.+++|..+..-.. .-.|.|||+++.+++++++..
T Consensus       233 ~~~~~I~V~~L~~ll~~~d-~~kivFIPs~eSlefi~~l~~  272 (279)
T 4e6z_A          233 KVDYKIKVLNMVDLIFTED-HKKFGFVPSTQSVKYLDKLNI  272 (279)
T ss_dssp             CCCCCEEEEEHHHHHTCSC-CTTEEEECCHHHHHHHHHHHH
T ss_pred             CCCCceEEEhHHHHHhhCC-cCeEEEECCHHHHHHHHHHhc
Confidence            4567899999999886533 347899999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00