Citrus Sinensis ID: 025701

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccEEEEEHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgsfsgvsttTSIEKMWLVAQALGDIAFAYPYSLILIEIQdtlkspppanqtmkkastmSIITTTIFYLFCggfgyaafgdntpgnlltgfgfyepywlidLANAFIVIHLVGgyqvysqpiFAHFEKWIcekfpengflnnefflkpplmpafrwnplrlcfRTVYVVSVTAIAMSFPYFNQVLGVIggvifwpltiyfpVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Flexible Loop (DISEMBL)
mgsfsgvsTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Low Complexity Region (SEG)
MGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Disordered region (IsUnstruct)
**********TSIEKMWLVAQALGDIAFAYPYSLILIEIQDT****************MSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII*****
Disordered Region (DISOPRED)
*GS****STTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKL*
Disordered Region (DISEMBL)
**********TSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Disordered Region (DISPRO)
***FSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA*L*
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
Q38967	493	Amino acid permease 2 OS=	yes	no	0.975	0.492	0.544	1e-79
Q9FF99	467	Probable amino acid perme	no	no	0.987	0.526	0.588	5e-76
O80592	475	Amino acid permease 8 OS=	no	no	0.979	0.513	0.522	3e-73
Q9FN04	466	Amino acid permease 4 OS=	no	no	0.975	0.521	0.516	9e-73
Q42400	485	Amino acid permease 1 OS=	no	no	0.979	0.503	0.510	1e-72
Q39134	476	Amino acid permease 3 OS=	no	no	0.923	0.483	0.556	2e-72
Q8GUM3	480	Amino acid permease 5 OS=	no	no	0.971	0.504	0.527	1e-70
P92934	481	Amino acid permease 6 OS=	no	no	0.935	0.484	0.525	2e-69
Q9FKS8	446	Lysine histidine transpor	no	no	0.823	0.459	0.309	2e-19
O22719	451	Lysine histidine transpor	no	no	0.775	0.427	0.284	2e-17

>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1

 Score =  296 bits (758), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 134/246 (54%), Positives = 183/246 (74%), Gaps = 3/246 (1%)

Query: 2   GSFSGVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTM 59
           GS +G+S  T T  +K+W   QALGDIAFAY YS++LIEIQDT++SPP  ++TMKKA+ +
Sbjct: 235 GSLTGISIGTVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKKATKI 294

Query: 60  SIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYS 119
           SI  TTIFY+ CG  GYAAFGD  PGNLLTGFGFY P+WL+D+ANA IV+HLVG YQV++
Sbjct: 295 SIAVTTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFA 354

Query: 120 QPIFAHFEKWICEKFPENGFLNNEFFLK-PPLMPAFRWNPLRLCFRTVYVVSVTAIAMSF 178
           QPIFA  EK + E++P+N FL+ EF ++ P     ++ N  R+ +R+ +VV+ T I+M  
Sbjct: 355 QPIFAFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVFRMVYRSGFVVTTTVISMLM 414

Query: 179 PYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVG 238
           P+FN V+G++G + FWPLT+YFPVEMY KQ  +E W+ +WV L++ S  C ++S    VG
Sbjct: 415 PFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVAGVG 474

Query: 239 SIQGII 244
           SI G++
Sbjct: 475 SIAGVM 480

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, arginine, glutamate and neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. Has a much higher affinity for basic amino acids as compared with AAP1. May function in xylem-to-phloem transfer and in uptake of amino acids assimilated in the green silique tissue.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1

 Score =  284 bits (726), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 146/248 (58%), Positives = 187/248 (75%), Gaps = 2/248 (0%)

Query: 2   GSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSI 61
           GS  G+      EK+W+V QALG+IAF+YP+S+IL+EIQDTL+SPP   QTMKKAST+++
Sbjct: 218 GSIRGIPAENRGEKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAV 277

Query: 62  ITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 121
              T F+  CG FGYAAFGD+TPGNLLTGFGFYEP+WL+D ANA IV+HLVGGYQVYSQP
Sbjct: 278 FIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQP 337

Query: 122 IFAHFEKWICEKFPENGFLNNEFFLKPPLM--PAFRWNPLRLCFRTVYVVSVTAIAMSFP 179
           IFA  E+ + +K+PEN F+   +  K PL+     R NP+R+C RT+YV+  T +A+ FP
Sbjct: 338 IFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFP 397

Query: 180 YFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGS 239
           YFN+VLGV+G + FWPL +YFPVEM   Q  I +WTR W++LR FS+VC +V    LVGS
Sbjct: 398 YFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGS 457

Query: 240 IQGIISAK 247
           I G++ AK
Sbjct: 458 IYGLVGAK 465

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1

 Score =  275 bits (702), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 128/245 (52%), Positives = 173/245 (70%), Gaps = 1/245 (0%)

Query: 2   GSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSI 61
           G+  GV  T S EK+W + QA+GDIAF+Y ++ ILIEIQDTL+S PP N+ MK+AS + +
Sbjct: 221 GTVIGVDVTAS-EKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRASLVGV 279

Query: 62  ITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 121
            TTT+FY+ CG  GYAAFG+  PG+ LT FGFYEPYWLID ANA I +HL+G YQVY+QP
Sbjct: 280 STTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQVYAQP 339

Query: 122 IFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYF 181
            F   E+   +K+P++ F+N E+  K PL+   R N  RL +RT YVV  T +AM FP+F
Sbjct: 340 FFQFVEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAMIFPFF 399

Query: 182 NQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQ 241
           N +LG++G   FWPLT+YFPV M+  Q  ++ ++R+W+ L +   VC IVS    VGSI 
Sbjct: 400 NAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSII 459

Query: 242 GIISA 246
           G+I++
Sbjct: 460 GLINS 464

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1

 Score =  273 bits (698), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 127/246 (51%), Positives = 174/246 (70%), Gaps = 3/246 (1%)

Query: 2   GSFSGVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTM 59
           GS +G+S    T  +K+W   QALGDIAFAY YS++LIEIQDT++SPP  ++TMK A+ +
Sbjct: 208 GSLTGISIGAVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIATRI 267

Query: 60  SIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYS 119
           SI  TT FY+ CG  GYAAFGD  PGNLLTGFGFY P+WL+D+ANA IVIHLVG YQV++
Sbjct: 268 SIAVTTTFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWLLDVANAAIVIHLVGAYQVFA 327

Query: 120 QPIFAHFEKWICEKFPENGFLNNEFFLK-PPLMPAFRWNPLRLCFRTVYVVSVTAIAMSF 178
           QPIFA  EK    +FP++  +  E+ ++ P     ++ N  R  +R+ +VV  T I+M  
Sbjct: 328 QPIFAFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVISMLM 387

Query: 179 PYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVG 238
           P+FN V+G++G + FWPLT+YFPVEMY +Q  +E W+ KWV L++ S  C +++    VG
Sbjct: 388 PFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVAGVG 447

Query: 239 SIQGII 244
           SI G++
Sbjct: 448 SIAGVM 453

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 125/245 (51%), Positives = 169/245 (68%), Gaps = 1/245 (0%)

Query: 2   GSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSI 61
           G+  GV  T + +K+W   QA+GDIAFAY Y+ +LIEIQDTL+S P  N+ MK+AS + +
Sbjct: 230 GTAVGVDVTAA-QKIWRSFQAVGDIAFAYAYATVLIEIQDTLRSSPAENKAMKRASLVGV 288

Query: 62  ITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 121
            TTT FY+ CG  GYAAFG+N PG+ LT FGF+EP+WLID ANA I +HL+G YQV++QP
Sbjct: 289 STTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWLIDFANACIAVHLIGAYQVFAQP 348

Query: 122 IFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYF 181
           IF   EK     +P+N F+ +E+ +  P +  F  +  RL +RT YVV  T +AM FP+F
Sbjct: 349 IFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFRLVWRTAYVVITTVVAMIFPFF 408

Query: 182 NQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQ 241
           N +LG+IG   FWPLT+YFPVEM+  Q  I+ ++ +W+ L+   YVC IVS     GSI 
Sbjct: 409 NAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAAAGSIA 468

Query: 242 GIISA 246
           G+IS+
Sbjct: 469 GLISS 473

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, glutamate and neutral amino acids. Reduced affinities for asparagine and valine. Involved in amino acid uptake from the apoplastic cavity into the embryo cells for storage protein accumulation and in root amino acid uptake.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2

 Score =  272 bits (696), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/232 (55%), Positives = 166/232 (71%), Gaps = 2/232 (0%)

Query: 2   GSFSGVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTM 59
           GS +G+S    T  +K+W   QALGDIAFAY YS+ILIEIQDT+KSPP   +TMKKA+ +
Sbjct: 219 GSLTGISIGAVTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKATLV 278

Query: 60  SIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYS 119
           S+  TT+FY+ CG  GYAAFGD +PGNLLTGFGFY PYWL+D+ANA IVIHL+G YQVY 
Sbjct: 279 SVSVTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQVYC 338

Query: 120 QPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFP 179
           QP+FA  EK    +FP++ F+  +  +  P     R N  RL +RTV+V+  T I+M  P
Sbjct: 339 QPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVISMLLP 398

Query: 180 YFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIV 231
           +FN V+G++G + FWPLT+YFPVEMY  Q  I  W+ +WV L+VFS  C +V
Sbjct: 399 FFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVV 450

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for GABA, tryptophan and both neutral and basic amino acids. High affinity transport of cationic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1

 Score =  266 bits (679), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 134/254 (52%), Positives = 170/254 (66%), Gaps = 12/254 (4%)

Query: 2   GSFSGVS--------TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTM 53
           GS +GV+        T TS +K+W   Q+LG+IAFAY YS+ILIEIQDT+KSPP    TM
Sbjct: 217 GSLTGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVNTM 276

Query: 54  KKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVG 113
           +KA+ +S+  TT+FY+ CG  GYAAFGDN PGNLL   GF  PYWL+D+AN  IVIHLVG
Sbjct: 277 RKATFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAIVIHLVG 336

Query: 114 GYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPA--FRWNPLRLCFRTVYVVSV 171
            YQVY QP+FA  EK    +FPE+ F+  E  +K  L P   F  N  RL +RT +V++ 
Sbjct: 337 AYQVYCQPLFAFVEKEASRRFPESEFVTKE--IKIQLFPGKPFNLNLFRLVWRTFFVMTT 394

Query: 172 TAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIV 231
           T I+M  P+FN V+G++G + FWPLT+YFPVEMY  Q N+  W  KWV L+V S  C  V
Sbjct: 395 TLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFV 454

Query: 232 STFGLVGSIQGIIS 245
           S     GS+ GI+S
Sbjct: 455 SVAAAAGSVIGIVS 468

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate and both neutral and basic amino acids. Reduced affinities for asparagine and valine. High affinity transport of the cationic amino acids arginine and lysine, but not of histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1

 Score =  262 bits (669), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 123/234 (52%), Positives = 161/234 (68%), Gaps = 1/234 (0%)

Query: 14  EKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA-NQTMKKASTMSIITTTIFYLFCG 72
           EK+W   QA+GDIAFAY YS +LIEIQDTLK+ PP+ N+ MK+AS + + TTT FY+ CG
Sbjct: 238 EKIWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCG 297

Query: 73  GFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE 132
             GYAAFG++ PGN LTGFGFYEP+WLID AN  I +HL+G YQV+ QPIF   E    +
Sbjct: 298 CVGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAK 357

Query: 133 KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVI 192
           ++P+N F+  E+ +  P    F  N LRL +RT YVV    +AM FP+FN  LG+IG   
Sbjct: 358 RWPDNKFITGEYKIHVPCCGDFSINFLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAAS 417

Query: 193 FWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 246
           FWPLT+YFP+EM+  Q  I  ++  W  L++ S+ CFIVS     GS+QG+I +
Sbjct: 418 FWPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAAAGSVQGLIQS 471

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xylem parenchyma.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 110/233 (47%), Gaps = 28/233 (12%)

Query: 21  QALGDIAFAYPYSLILIEIQDTLKSPP--PANQTMKKASTMSIITTTIFYLFCGGFGYAA 78
             LGD+AFAY    +++EIQ T+ S P  P+   M +   ++ I   + Y      GY  
Sbjct: 230 SGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYI 289

Query: 79  FGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENG 138
           FG+    N+L      +P WLI  AN F+VIH++G YQ+Y+ P+F   E  + +K     
Sbjct: 290 FGNGVEDNILMSLK--KPAWLIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKK----- 342

Query: 139 FLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTI 198
            LN     +P          LR   R  YV +   + M+FP+F  +L   GG  F P T 
Sbjct: 343 -LN----FRPT-------TTLRFFVRNFYVAATMFVGMTFPFFGGLLAFFGGFAFAPTTY 390

Query: 199 YFP----VEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAK 247
           + P    + +Y  +    +W   WV + VF     ++S  G + +I  +I AK
Sbjct: 391 FLPCVIWLAIYKPKKYSLSWWANWVCI-VFGLFLMVLSPIGGLRTI--VIQAK 440

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 25/218 (11%)

Query: 22  ALGDIAFAYPYSLILIEIQDTLKSPP--PANQTMKKASTMSIITTTIFYLFCGGFGYAAF 79
           ALG++AFAY    +++EIQ T+ S P  P+ + M K + ++ I     Y      G+  F
Sbjct: 233 ALGEMAFAYAGHNVVLEIQATIPSTPENPSKRPMWKGAIVAYIIVAFCYFPVALVGFWTF 292

Query: 80  GDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGF 139
           G+N   N+L       P  LI +AN F++IHL+G YQVY+ P+F   E  + +K+     
Sbjct: 293 GNNVEENILKTL--RGPKGLIIVANIFVIIHLMGSYQVYAMPVFDMIESVMIKKW----- 345

Query: 140 LNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIY 199
                   P  +       LR   R  +V +   IA++ P+F+ +L   GG IF P T +
Sbjct: 346 -----HFSPTRV-------LRFTIRWTFVAATMGIAVALPHFSALLSFFGGFIFAPTTYF 393

Query: 200 FPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLV 237
            P  ++      + ++  W +    +++C I+    ++
Sbjct: 394 IPCIIWLILKKPKRFSLSWCI----NWICIILGVLVMI 427

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
255586130	461	amino acid transporter, putative [Ricinu	1.0	0.540	0.694	1e-102
225462048	472	PREDICTED: probable amino acid permease	0.995	0.525	0.685	1e-102
224122264	300	amino acid permease [Populus trichocarpa	0.991	0.823	0.688	1e-100
359494348	623	PREDICTED: probable amino acid permease	0.995	0.398	0.685	8e-99
296089993	458	unnamed protein product [Vitis vinifera]	0.995	0.541	0.685	9e-99
357460351	460	Amino acid permease [Medicago truncatula	1.0	0.541	0.658	3e-97
356501671	461	PREDICTED: probable amino acid permease	1.0	0.540	0.650	4e-97
224122284	458	amino acid permease [Populus trichocarpa	0.991	0.539	0.680	6e-97
224146569	431	amino acid permease [Populus trichocarpa	0.975	0.563	0.674	2e-96
356552382	461	PREDICTED: LOW QUALITY PROTEIN: probable	1.0	0.540	0.650	4e-96

>gi|255586130|ref|XP_002533727.1| amino acid transporter, putative [Ricinus communis] gi|223526365|gb|EEF28658.1| amino acid transporter, putative [Ricinus communis]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/249 (69%), Positives = 211/249 (84%)

Query: 1   MGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMS 60
           MGS +GVS +++ +K+W ++QALGDIAFAYPYSLIL+EIQDTLKSPP  N+TM+KAST++
Sbjct: 213 MGSITGVSASSAADKVWNISQALGDIAFAYPYSLILLEIQDTLKSPPTENETMRKASTIA 272

Query: 61  IITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQ 120
           ++ TT FYL CG FGYAAFG++TPGNLLTGFGFYEPYWLID ANA IV+HLVGGYQVYSQ
Sbjct: 273 LVVTTFFYLCCGAFGYAAFGEDTPGNLLTGFGFYEPYWLIDFANACIVLHLVGGYQVYSQ 332

Query: 121 PIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY 180
           P+FA  EKW  E+ P + F+NN + LK PL+PAF  N  R+CFRT+YVVS TAI+M FPY
Sbjct: 333 PVFATIEKWFAERHPASRFINNNYSLKLPLLPAFGLNAFRICFRTLYVVSTTAISMIFPY 392

Query: 181 FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSI 240
           FNQV+G++G + FWPLTIYFPVEMYF+Q NIEAWT KW+MLR FS V F+V+   LVGS+
Sbjct: 393 FNQVIGLLGALNFWPLTIYFPVEMYFRQRNIEAWTIKWIMLRAFSIVVFLVAAIALVGSV 452

Query: 241 QGIISAKLS 249
           +G+ISAKLS
Sbjct: 453 EGVISAKLS 461

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462048|ref|XP_002268936.1| PREDICTED: probable amino acid permease 7 [Vitis vinifera] gi|296089992|emb|CBI39811.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 170/248 (68%), Positives = 207/248 (83%)

Query: 2   GSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSI 61
           GS  G+ST+T  EK+WL++QALGDIAFAYPYSLI IEIQDTLKSPPP ++TMKKAST++I
Sbjct: 225 GSIEGISTSTVAEKVWLISQALGDIAFAYPYSLISIEIQDTLKSPPPESETMKKASTLAI 284

Query: 62  ITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 121
             TT+FYLFCGGFGYAAFGD+TPGNLLTGFGFYEPYWL+D ANA +V HLVGGYQ+Y+QP
Sbjct: 285 TVTTLFYLFCGGFGYAAFGDDTPGNLLTGFGFYEPYWLVDFANACVVAHLVGGYQIYTQP 344

Query: 122 IFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYF 181
           +F   ++W  +KFP +GF+NN++  K PL+PAFR N  RLCFRT YV + T IAM FPYF
Sbjct: 345 LFGMVDRWSAQKFPNSGFVNNDYVFKLPLLPAFRVNLFRLCFRTAYVGTTTGIAMIFPYF 404

Query: 182 NQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQ 241
           NQVLGVIG + FWPL IYFPVEMYF Q  I  WTR W++L++FS+VC +V+ F  VGS++
Sbjct: 405 NQVLGVIGAMNFWPLAIYFPVEMYFVQRKIGVWTRMWLLLQIFSFVCLVVTVFAFVGSVE 464

Query: 242 GIISAKLS 249
           G+I+AKLS
Sbjct: 465 GLITAKLS 472

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122264|ref|XP_002330580.1| amino acid permease [Populus trichocarpa] gi|222872138|gb|EEF09269.1| amino acid permease [Populus trichocarpa]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/247 (68%), Positives = 206/247 (83%)

Query: 2   GSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSI 61
           G  +GVS   + +K+W V+QALGDIAFAYPYSLIL+EIQDTLKSPP  +++MKKAST+++
Sbjct: 54  GGIAGVSAYRAADKVWNVSQALGDIAFAYPYSLILLEIQDTLKSPPSESKSMKKASTIAV 113

Query: 62  ITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 121
           + TT FYL CGGFGYAAFG+ TPGNLLTGFGFYEPYWLIDLANA IV+HLVGGYQVYSQP
Sbjct: 114 VVTTFFYLCCGGFGYAAFGEKTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQVYSQP 173

Query: 122 IFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYF 181
           +FA  E WI EK+PEN FLN     K P +P F+ N LRLCFRT+YV+S T IA+ FPYF
Sbjct: 174 LFAVIENWIAEKYPENRFLNKNLTYKFPRLPGFQLNLLRLCFRTIYVISTTVIAVMFPYF 233

Query: 182 NQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQ 241
           NQV+G++GG  FWPL +YFPVEMYFKQ NIEAWT KW+MLR FS +CF+V+ F L+GS++
Sbjct: 234 NQVIGLLGGFGFWPLAVYFPVEMYFKQKNIEAWTIKWIMLRAFSVICFLVTAFALIGSVE 293

Query: 242 GIISAKL 248
           G++SA+L
Sbjct: 294 GLMSARL 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494348|ref|XP_002268981.2| PREDICTED: probable amino acid permease 7-like [Vitis vinifera]

 Score =  365 bits (938), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 170/248 (68%), Positives = 203/248 (81%)

Query: 2   GSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSI 61
           GS  G+S + + +K+WLV QALGDIAFAYPYSLIL+EIQDTLK+PPP N+TMKKAS  +I
Sbjct: 376 GSIEGISASNTADKIWLVFQALGDIAFAYPYSLILLEIQDTLKAPPPENKTMKKASMSAI 435

Query: 62  ITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 121
           + TT FYL CG FGYAAFGD+TPGNLLTGFGF+EPYWLID ANA I++HLVGGYQVYSQP
Sbjct: 436 LITTFFYLCCGCFGYAAFGDDTPGNLLTGFGFFEPYWLIDFANACIILHLVGGYQVYSQP 495

Query: 122 IFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYF 181
           +FA  E+W+  KFP +GF+N  + LK PL+PAF+ N LR+CFRT YV+S T IAM FPYF
Sbjct: 496 VFAFVERWVTRKFPNSGFVNKFYTLKLPLLPAFQMNLLRICFRTTYVISTTGIAMIFPYF 555

Query: 182 NQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQ 241
           NQVLG++G + FWPL IYFPVEMY  Q  I AWTR W++LR FS VC +VS   LVGS++
Sbjct: 556 NQVLGLLGALNFWPLAIYFPVEMYLVQKKIGAWTRTWIILRTFSLVCLLVSILTLVGSVE 615

Query: 242 GIISAKLS 249
           GIISAK+S
Sbjct: 616 GIISAKVS 623

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089993|emb|CBI39812.3| unnamed protein product [Vitis vinifera]

 Score =  365 bits (937), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 170/248 (68%), Positives = 203/248 (81%)

Query: 2   GSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSI 61
           GS  G+S + + +K+WLV QALGDIAFAYPYSLIL+EIQDTLK+PPP N+TMKKAS  +I
Sbjct: 211 GSIEGISASNTADKIWLVFQALGDIAFAYPYSLILLEIQDTLKAPPPENKTMKKASMSAI 270

Query: 62  ITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 121
           + TT FYL CG FGYAAFGD+TPGNLLTGFGF+EPYWLID ANA I++HLVGGYQVYSQP
Sbjct: 271 LITTFFYLCCGCFGYAAFGDDTPGNLLTGFGFFEPYWLIDFANACIILHLVGGYQVYSQP 330

Query: 122 IFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYF 181
           +FA  E+W+  KFP +GF+N  + LK PL+PAF+ N LR+CFRT YV+S T IAM FPYF
Sbjct: 331 VFAFVERWVTRKFPNSGFVNKFYTLKLPLLPAFQMNLLRICFRTTYVISTTGIAMIFPYF 390

Query: 182 NQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQ 241
           NQVLG++G + FWPL IYFPVEMY  Q  I AWTR W++LR FS VC +VS   LVGS++
Sbjct: 391 NQVLGLLGALNFWPLAIYFPVEMYLVQKKIGAWTRTWIILRTFSLVCLLVSILTLVGSVE 450

Query: 242 GIISAKLS 249
           GIISAK+S
Sbjct: 451 GIISAKVS 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460351|ref|XP_003600457.1| Amino acid permease [Medicago truncatula] gi|358349328|ref|XP_003638690.1| Amino acid permease [Medicago truncatula] gi|355489505|gb|AES70708.1| Amino acid permease [Medicago truncatula] gi|355504625|gb|AES85828.1| Amino acid permease [Medicago truncatula]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 164/249 (65%), Positives = 202/249 (81%)

Query: 1   MGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMS 60
           MGS +GV T    +K+WL+ QA+GDI+F+YPYS+I +EIQDTL+SPPP NQTMKKAS M+
Sbjct: 212 MGSLTGVQTANVADKIWLIFQAIGDISFSYPYSMIFLEIQDTLESPPPENQTMKKASMMA 271

Query: 61  IITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQ 120
           I  TT FY+ CGGFGYAAFG+ TPGNLLTGFGFYEPYWLIDLAN  I+IHLVGGYQVYSQ
Sbjct: 272 ISITTFFYICCGGFGYAAFGNATPGNLLTGFGFYEPYWLIDLANVCIIIHLVGGYQVYSQ 331

Query: 121 PIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY 180
           PIF   ++W   KFPE+GF+N+   +K PL+P+F+ N  R CFRT YV+S T +A+ FPY
Sbjct: 332 PIFNTADRWCSRKFPESGFVNDFHKVKLPLLPSFKINLFRFCFRTSYVISTTGLAIFFPY 391

Query: 181 FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSI 240
           FNQ+LGV+GG+ FWPL IYFPVEMYF Q  I AWT+KW++LR+FS+ CF+V+  GL+GS 
Sbjct: 392 FNQILGVLGGINFWPLAIYFPVEMYFVQKKIGAWTKKWIVLRIFSFACFLVTMMGLIGSF 451

Query: 241 QGIISAKLS 249
           +GII  KLS
Sbjct: 452 EGIIHEKLS 460

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501671|ref|XP_003519647.1| PREDICTED: probable amino acid permease 7-like [Glycine max]

 Score =  360 bits (923), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 162/249 (65%), Positives = 205/249 (82%)

Query: 1   MGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMS 60
           MGS +GV  +   +K+WLV Q +GDIAFAYPY++IL+EIQDTL+SPPP N+TMKKAS ++
Sbjct: 213 MGSLTGVPASNIADKLWLVFQGIGDIAFAYPYTVILLEIQDTLESPPPENKTMKKASMIA 272

Query: 61  IITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQ 120
           I+ TT FYL CG FGYAAFG+ TPGNLLTGFGFYEPYWLID ANA IV+HLVGGYQ+YSQ
Sbjct: 273 ILITTFFYLCCGCFGYAAFGNQTPGNLLTGFGFYEPYWLIDFANACIVLHLVGGYQIYSQ 332

Query: 121 PIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY 180
           PI+   ++W  +++P +GF+NN + LK P +PAF+ N  R+CFRT YVVS T +A+ FPY
Sbjct: 333 PIYGAVDRWCSKRYPNSGFVNNFYQLKLPRLPAFQLNMFRICFRTAYVVSTTGLAILFPY 392

Query: 181 FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSI 240
           FNQV+GV+G + FWPL IYFPVEMYF Q  +EAW+RKW++LR FS++CF+VS  GL+GS+
Sbjct: 393 FNQVIGVLGALGFWPLAIYFPVEMYFVQRKVEAWSRKWIVLRTFSFICFLVSLLGLIGSL 452

Query: 241 QGIISAKLS 249
           +GIIS KLS
Sbjct: 453 EGIISEKLS 461

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122284|ref|XP_002330585.1| amino acid permease [Populus trichocarpa] gi|222872143|gb|EEF09274.1| amino acid permease [Populus trichocarpa]

 Score =  359 bits (921), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 168/247 (68%), Positives = 199/247 (80%)

Query: 2   GSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSI 61
           GS +GVS  T+  K+WL  +ALGDIAFAYPYS+IL+EIQDTLKSPPP N+TMKKAS +SI
Sbjct: 211 GSIAGVSAATTANKLWLAFEALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKKASMISI 270

Query: 62  ITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 121
             TT FYL CG FGYAAFG+NTPGNLLTGFGF+EPYWL+DLANA +V+HLVGGYQ+YSQP
Sbjct: 271 FITTFFYLCCGCFGYAAFGNNTPGNLLTGFGFFEPYWLVDLANACVVLHLVGGYQIYSQP 330

Query: 122 IFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYF 181
           +FA  E W   KFP +GF+NN    K PL+     N  RLCFRTVYV S TA+AM+FPYF
Sbjct: 331 VFAFVEGWFSRKFPSSGFVNNFHSFKLPLIRPLHINLFRLCFRTVYVASTTAVAMAFPYF 390

Query: 182 NQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQ 241
           NQVLGV+G + FWPL IYFPVEMYF Q  I AWTRKW++LR FS+ C +++  GL+GSI+
Sbjct: 391 NQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFACLLITIAGLLGSIE 450

Query: 242 GIISAKL 248
           G+ISAKL
Sbjct: 451 GLISAKL 457

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146569|ref|XP_002336318.1| amino acid permease [Populus trichocarpa] gi|222834652|gb|EEE73115.1| amino acid permease [Populus trichocarpa]

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 164/243 (67%), Positives = 198/243 (81%)

Query: 2   GSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSI 61
           G  +GVS   + +K+W V+QALGDIAFAYPY LIL+EIQDTLKSPP  +++MKKAS +++
Sbjct: 189 GGIAGVSAYRAADKVWNVSQALGDIAFAYPYPLILLEIQDTLKSPPSESKSMKKASIIAV 248

Query: 62  ITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 121
           + TT FYL CGGFGYAAFG+ TPGNLLTGFGFYEPYWLID ANA IV+HL GGYQVYSQP
Sbjct: 249 VVTTFFYLCCGGFGYAAFGEKTPGNLLTGFGFYEPYWLIDFANACIVLHLAGGYQVYSQP 308

Query: 122 IFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYF 181
           +FA  E WI EK+PEN FLN     K P +P F+ N LRLCFRT+YVVS T IA+ FPYF
Sbjct: 309 LFAVIENWIAEKYPENRFLNKNLTCKFPRLPGFQLNLLRLCFRTIYVVSTTVIAVMFPYF 368

Query: 182 NQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQ 241
           NQV+G++GG  FWPL +YFPVEMYFKQ NIEAWT KW+MLR FS +CF+V+ F L+GS++
Sbjct: 369 NQVIGLLGGFGFWPLAVYFPVEMYFKQKNIEAWTIKWIMLRAFSVICFLVTAFALIGSVE 428

Query: 242 GII 244
           G++
Sbjct: 429 GLM 431

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552382|ref|XP_003544547.1| PREDICTED: LOW QUALITY PROTEIN: probable amino acid permease 7-like [Glycine max]

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 162/249 (65%), Positives = 204/249 (81%)

Query: 1   MGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMS 60
           MGS +GV  +   +K+WLV QA+GDIAFAYPY++IL+EIQDTL+SPPP N+TMKKAS ++
Sbjct: 213 MGSLTGVPASNIADKLWLVFQAIGDIAFAYPYTVILLEIQDTLESPPPENKTMKKASMIA 272

Query: 61  IITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQ 120
           I+ TT FYL CG FGYAAFG+ TPGNLLTGFGFYEPYWLID ANA IV+HLVGGYQ+YSQ
Sbjct: 273 ILITTFFYLCCGCFGYAAFGNQTPGNLLTGFGFYEPYWLIDFANACIVLHLVGGYQIYSQ 332

Query: 121 PIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY 180
           PI+   ++W  +++P +GF+NN + LK P +PAF+ N  R+CFRT  VVS T +A+ FPY
Sbjct: 333 PIYGAVDRWCSKRYPNSGFVNNFYQLKLPRLPAFQLNMFRICFRTTXVVSTTGLAILFPY 392

Query: 181 FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSI 240
           FNQV+GV+G + FWPL IYFPVEMYF Q  IEAW+RKW++LR FS++CF+VS   L+GS+
Sbjct: 393 FNQVIGVLGALGFWPLAIYFPVEMYFVQRKIEAWSRKWIVLRTFSFICFLVSLVALIGSL 452

Query: 241 QGIISAKLS 249
           +GIIS KLS
Sbjct: 453 EGIISEKLS 461

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2172868	467	AAP7 "amino acid permease 7" [	0.987	0.526	0.588	5.2e-81
TAIR|locus:2184707	493	AAP2 "amino acid permease 2" [	0.975	0.492	0.544	2.1e-75
TAIR|locus:2031402	476	AAP3 "amino acid permease 3" [	0.975	0.510	0.546	6.7e-72
TAIR|locus:2201871	475	AAP8 "amino acid permease 8" [	0.979	0.513	0.522	2.4e-69
TAIR|locus:2163981	466	AAP4 "amino acid permease 4" [	0.975	0.521	0.516	3.8e-69
TAIR|locus:2016600	485	AAP1 "amino acid permease 1" [	0.979	0.503	0.510	1.7e-68
TAIR|locus:2205876	480	AAP5 "amino acid permease 5" [	0.975	0.506	0.530	9.2e-68
TAIR|locus:2168912	481	AAP6 "amino acid permease 6" [	0.935	0.484	0.525	6.5e-67
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.497	0.281	0.384	2e-28
TAIR|locus:2008605	441	AT1G67640 "AT1G67640" [Arabido	0.510	0.287	0.356	1.4e-26

TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 146/248 (58%), Positives = 187/248 (75%)

Query:     2 GSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSI 61
             GS  G+      EK+W+V QALG+IAF+YP+S+IL+EIQDTL+SPP   QTMKKAST+++
Sbjct:   218 GSIRGIPAENRGEKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAV 277

Query:    62 ITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 121
                T F+  CG FGYAAFGD+TPGNLLTGFGFYEP+WL+D ANA IV+HLVGGYQVYSQP
Sbjct:   278 FIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQP 337

Query:   122 IFAHFEKWICEKFPENGFLNNEFFLKPPLM--PAFRWNPLRLCFRTVYVVSVTAIAMSFP 179
             IFA  E+ + +K+PEN F+   +  K PL+     R NP+R+C RT+YV+  T +A+ FP
Sbjct:   338 IFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFP 397

Query:   180 YFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGS 239
             YFN+VLGV+G + FWPL +YFPVEM   Q  I +WTR W++LR FS+VC +V    LVGS
Sbjct:   398 YFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGS 457

Query:   240 IQGIISAK 247
             I G++ AK
Sbjct:   458 IYGLVGAK 465

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 134/246 (54%), Positives = 183/246 (74%)

Query:     2 GSFSGVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTM 59
             GS +G+S  T T  +K+W   QALGDIAFAY YS++LIEIQDT++SPP  ++TMKKA+ +
Sbjct:   235 GSLTGISIGTVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKKATKI 294

Query:    60 SIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYS 119
             SI  TTIFY+ CG  GYAAFGD  PGNLLTGFGFY P+WL+D+ANA IV+HLVG YQV++
Sbjct:   295 SIAVTTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFA 354

Query:   120 QPIFAHFEKWICEKFPENGFLNNEFFLK-PPLMPAFRWNPLRLCFRTVYVVSVTAIAMSF 178
             QPIFA  EK + E++P+N FL+ EF ++ P     ++ N  R+ +R+ +VV+ T I+M  
Sbjct:   355 QPIFAFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVFRMVYRSGFVVTTTVISMLM 414

Query:   179 PYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVG 238
             P+FN V+G++G + FWPLT+YFPVEMY KQ  +E W+ +WV L++ S  C ++S    VG
Sbjct:   415 PFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVAGVG 474

Query:   239 SIQGII 244
             SI G++
Sbjct:   475 SIAGVM 480

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0016020 "membrane" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015800 "acidic amino acid transport" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 134/245 (54%), Positives = 173/245 (70%)

Query:     2 GSFSGVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTM 59
             GS +G+S    T  +K+W   QALGDIAFAY YS+ILIEIQDT+KSPP   +TMKKA+ +
Sbjct:   219 GSLTGISIGAVTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKATLV 278

Query:    60 SIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYS 119
             S+  TT+FY+ CG  GYAAFGD +PGNLLTGFGFY PYWL+D+ANA IVIHL+G YQVY 
Sbjct:   279 SVSVTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQVYC 338

Query:   120 QPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFP 179
             QP+FA  EK    +FP++ F+  +  +  P     R N  RL +RTV+V+  T I+M  P
Sbjct:   339 QPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVISMLLP 398

Query:   180 YFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGS 239
             +FN V+G++G + FWPLT+YFPVEMY  Q  I  W+ +WV L+VFS  C +VS     GS
Sbjct:   399 FFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAAAGS 458

Query:   240 IQGII 244
             I G++
Sbjct:   459 IAGVL 463

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015802 "basic amino acid transport" evidence=RCA;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 128/245 (52%), Positives = 173/245 (70%)

Query:     2 GSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSI 61
             G+  GV  T S EK+W + QA+GDIAF+Y ++ ILIEIQDTL+S PP N+ MK+AS + +
Sbjct:   221 GTVIGVDVTAS-EKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRASLVGV 279

Query:    62 ITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 121
              TTT+FY+ CG  GYAAFG+  PG+ LT FGFYEPYWLID ANA I +HL+G YQVY+QP
Sbjct:   280 STTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQVYAQP 339

Query:   122 IFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYF 181
              F   E+   +K+P++ F+N E+  K PL+   R N  RL +RT YVV  T +AM FP+F
Sbjct:   340 FFQFVEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAMIFPFF 399

Query:   182 NQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQ 241
             N +LG++G   FWPLT+YFPV M+  Q  ++ ++R+W+ L +   VC IVS    VGSI 
Sbjct:   400 NAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSII 459

Query:   242 GIISA 246
             G+I++
Sbjct:   460 GLINS 464

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0006865 "amino acid transport" evidence=IGI

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 127/246 (51%), Positives = 174/246 (70%)

Query:     2 GSFSGVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTM 59
             GS +G+S    T  +K+W   QALGDIAFAY YS++LIEIQDT++SPP  ++TMK A+ +
Sbjct:   208 GSLTGISIGAVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIATRI 267

Query:    60 SIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYS 119
             SI  TT FY+ CG  GYAAFGD  PGNLLTGFGFY P+WL+D+ANA IVIHLVG YQV++
Sbjct:   268 SIAVTTTFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWLLDVANAAIVIHLVGAYQVFA 327

Query:   120 QPIFAHFEKWICEKFPENGFLNNEFFLK-PPLMPAFRWNPLRLCFRTVYVVSVTAIAMSF 178
             QPIFA  EK    +FP++  +  E+ ++ P     ++ N  R  +R+ +VV  T I+M  
Sbjct:   328 QPIFAFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVISMLM 387

Query:   179 PYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVG 238
             P+FN V+G++G + FWPLT+YFPVEMY +Q  +E W+ KWV L++ S  C +++    VG
Sbjct:   388 PFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVAGVG 447

Query:   239 SIQGII 244
             SI G++
Sbjct:   448 SIAGVM 453

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA;TAS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015399 "primary active transmembrane transporter activity" evidence=IDA

TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 125/245 (51%), Positives = 169/245 (68%)

Query:     2 GSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSI 61
             G+  GV  T + +K+W   QA+GDIAFAY Y+ +LIEIQDTL+S P  N+ MK+AS + +
Sbjct:   230 GTAVGVDVTAA-QKIWRSFQAVGDIAFAYAYATVLIEIQDTLRSSPAENKAMKRASLVGV 288

Query:    62 ITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 121
              TTT FY+ CG  GYAAFG+N PG+ LT FGF+EP+WLID ANA I +HL+G YQV++QP
Sbjct:   289 STTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWLIDFANACIAVHLIGAYQVFAQP 348

Query:   122 IFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYF 181
             IF   EK     +P+N F+ +E+ +  P +  F  +  RL +RT YVV  T +AM FP+F
Sbjct:   349 IFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFRLVWRTAYVVITTVVAMIFPFF 408

Query:   182 NQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQ 241
             N +LG+IG   FWPLT+YFPVEM+  Q  I+ ++ +W+ L+   YVC IVS     GSI 
Sbjct:   409 NAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAAAGSIA 468

Query:   242 GIISA 246
             G+IS+
Sbjct:   469 GLISS 473

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0009624 "response to nematode" evidence=IEP

GO:0043090 "amino acid import" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

GO:0015804 "neutral amino acid transport" evidence=IGI

TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 131/247 (53%), Positives = 168/247 (68%)

Query:     1 MGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMS 60
             +G+ +   T TS +K+W   Q+LG+IAFAY YS+ILIEIQDT+KSPP    TM+KA+ +S
Sbjct:   224 VGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVNTMRKATFVS 283

Query:    61 IITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQ 120
             +  TT+FY+ CG  GYAAFGDN PGNLL   GF  PYWL+D+AN  IVIHLVG YQVY Q
Sbjct:   284 VAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAIVIHLVGAYQVYCQ 343

Query:   121 PIFAHFEKWICEKFPENGFLNNEFFLKPPLMPA--FRWNPLRLCFRTVYVVSVTAIAMSF 178
             P+FA  EK    +FPE+ F+  E  +K  L P   F  N  RL +RT +V++ T I+M  
Sbjct:   344 PLFAFVEKEASRRFPESEFVTKE--IKIQLFPGKPFNLNLFRLVWRTFFVMTTTLISMLM 401

Query:   179 PYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVG 238
             P+FN V+G++G + FWPLT+YFPVEMY  Q N+  W  KWV L+V S  C  VS     G
Sbjct:   402 PFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFVSVAAAAG 461

Query:   239 SIQGIIS 245
             S+ GI+S
Sbjct:   462 SVIGIVS 468

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;TAS

GO:0016020 "membrane" evidence=ISS

GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IDA

GO:0015802 "basic amino acid transport" evidence=TAS

GO:0015809 "arginine transport" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 123/234 (52%), Positives = 161/234 (68%)

Query:    14 EKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA-NQTMKKASTMSIITTTIFYLFCG 72
             EK+W   QA+GDIAFAY YS +LIEIQDTLK+ PP+ N+ MK+AS + + TTT FY+ CG
Sbjct:   238 EKIWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCG 297

Query:    73 GFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE 132
               GYAAFG++ PGN LTGFGFYEP+WLID AN  I +HL+G YQV+ QPIF   E    +
Sbjct:   298 CVGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAK 357

Query:   133 KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVI 192
             ++P+N F+  E+ +  P    F  N LRL +RT YVV    +AM FP+FN  LG+IG   
Sbjct:   358 RWPDNKFITGEYKIHVPCCGDFSINFLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAAS 417

Query:   193 FWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 246
             FWPLT+YFP+EM+  Q  I  ++  W  L++ S+ CFIVS     GS+QG+I +
Sbjct:   418 FWPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAAAGSVQGLIQS 471

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015810 "aspartate transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IDA

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 217 (81.4 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 50/130 (38%), Positives = 73/130 (56%)

Query:    10 TTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP--PANQTMKKASTMSIITTTIF 67
             TTS  K++    ALGD+AFAY    +++EIQ T+ S P  P+ + M K   ++ I   + 
Sbjct:   214 TTSTGKVFGFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKKPMWKGVVVAYIIVALC 273

Query:    68 YLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFE 127
             Y      GY AFG++   N+L       P WLI LAN  +VIH++G YQ+Y+ P+F   E
Sbjct:   274 YFPVALVGYWAFGNHVDDNILITLS--RPKWLIALANMMVVIHVIGSYQIYAMPVFDMIE 331

Query:   128 KWICEK--FP 135
               + +K  FP
Sbjct:   332 TVLVKKLRFP 341

GO:0009536 "plastid" evidence=IC

TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
 Identities = 47/132 (35%), Positives = 75/132 (56%)

Query:     4 FSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP--PANQTMKKASTMSI 61
             +S  ++TTS   ++    ALGD+AFAY    +++EIQ T+ S P  P+   M K   ++ 
Sbjct:   209 YSSRASTTS-GNVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEKPSKIAMWKGVVVAY 267

Query:    62 ITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 121
             I   I Y       Y  FG++   N+L      +P WLI +ANAF+V+H++G YQ+Y+ P
Sbjct:   268 IVVAICYFPVAFVCYYIFGNSVDDNIL--MTLEKPIWLIAIANAFVVVHVIGSYQIYAMP 325

Query:   122 IFAHFEKWICEK 133
             +F   E ++ +K
Sbjct:   326 VFDMLETFLVKK 337

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	1e-47

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  161 bits (410), Expect = 1e-47
 Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 17/241 (7%)

Query: 6   GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTT 65
           G     +  K+  +  A+G I FA+    +L+ IQ+T+KSP    + M K    +II  T
Sbjct: 182 GSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPS-KFKAMTKVLLTAIIIVT 240

Query: 66  IFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH 125
           + Y+  G  GY AFG+N  GN+L         WLID+AN  +V+HL+  Y + + PI   
Sbjct: 241 VLYILVGLVGYLAFGNNVKGNILLNLPK--SDWLIDIANLLLVLHLLLSYPLQAFPIRQI 298

Query: 126 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVL 185
            E  +  K                     +   LR+  R+  VV    IA+S P+    L
Sbjct: 299 VENLLFRKGASG-------------KHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFL 345

Query: 186 GVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRV-FSYVCFIVSTFGLVGSIQGII 244
            ++G     PLT   P   + K    +  + + +        +C ++    +   + G+I
Sbjct: 346 SLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLI 405

Query: 245 S 245
            
Sbjct: 406 I 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	99.97
KOG1305	411	consensus Amino acid transporter protein [Amino ac	99.96
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.94
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.62
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.13
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.01
PRK15132	403	tyrosine transporter TyrP; Provisional	98.84
PRK10483	414	tryptophan permease; Provisional	98.76
PRK09664	415	tryptophan permease TnaB; Provisional	98.64
PRK13629	443	threonine/serine transporter TdcC; Provisional	98.49
TIGR00814	397	stp serine transporter. The HAAAP family includes	98.39
PRK11021	410	putative transporter; Provisional	98.07
PRK10644	445	arginine:agmatin antiporter; Provisional	97.92
PRK10655	438	potE putrescine transporter; Provisional	97.85
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.85
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	97.82
PRK10197	446	gamma-aminobutyrate transporter; Provisional	97.67
PRK10746	461	putative transport protein YifK; Provisional	97.67
PRK15049	499	L-asparagine permease; Provisional	97.67
PRK10249	458	phenylalanine transporter; Provisional	97.63
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	97.62
TIGR00913	478	2A0310 amino acid permease (yeast).	97.57
PRK11357	445	frlA putative fructoselysine transporter; Provisio	97.57
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	97.57
PRK10580	457	proY putative proline-specific permease; Provision	97.53
PRK11387	471	S-methylmethionine transporter; Provisional	97.52
PRK10836	489	lysine transporter; Provisional	97.43
TIGR00909	429	2A0306 amino acid transporter.	97.42
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	97.36
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	97.35
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.35
PRK10238	456	aromatic amino acid transporter; Provisional	97.31
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	97.31
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	97.29
TIGR00906	557	2A0303 cationic amino acid transport permease.	97.21
TIGR00911	501	2A0308 L-type amino acid transporter.	97.15
PRK15238	496	inner membrane transporter YjeM; Provisional	97.02
TIGR00930	953	2a30 K-Cl cotransporter.	96.94
COG0531	466	PotE Amino acid transporters [Amino acid transport	96.9
KOG1287	479	consensus Amino acid transporters [Amino acid tran	96.69
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	96.62
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	96.62
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	95.23
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	94.81
TIGR00912	359	2A0309 spore germination protein (amino acid perme	93.76
KOG1286	554	consensus Amino acid transporters [Amino acid tran	84.36
KOG1289	550	consensus Amino acid transporters [Amino acid tran	81.62
COG0833	541	LysP Amino acid transporters [Amino acid transport	81.24

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=4e-36  Score=271.37  Aligned_cols=215  Identities=21%  Similarity=0.302  Sum_probs=192.3

Q ss_pred             CccccCChhhHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchh---hhhHHHHHHHHHHHHhhhhhhhhccCC
Q 025701            5 SGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMK---KASTMSIITTTIFYLFCGGFGYAAFGD   81 (249)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~---~~~~~s~~i~~~~y~~~g~~GY~~fG~   81 (249)
                      ++++......++.+....+|+.+|||+++.++.|++++||+|    ++|.   +++..+|.++.++|+.+|++||++|||
T Consensus       229 ~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~  304 (449)
T KOG1304|consen  229 PPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGD  304 (449)
T ss_pred             CCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            345545555667788899999999999999999999999999    9999   999999999999999999999999999


Q ss_pred             cccccccccccCCCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchh
Q 025701           82 NTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRL  161 (249)
Q Consensus        82 ~~~~~il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~  161 (249)
                      ++++.|+.|+|  + .|+.+.+++.+++.++++||+|.+|..+++|+.+..+..++                + -++...
T Consensus       305 ~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~----------------~-~~~~~~  364 (449)
T KOG1304|consen  305 DVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN----------------R-KKLLEY  364 (449)
T ss_pred             cccceEEecCC--c-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc----------------h-hHHHHH
Confidence            99999999999  3 68999999999999999999999999999999887654321                1 146778


Q ss_pred             hHHHHHHHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccch---hhHHHHHHHHHHHHHHHHHHHHHHH
Q 025701          162 CFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEA---WTRKWVMLRVFSYVCFIVSTFGLVG  238 (249)
Q Consensus       162 ~~r~~~~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~---~~~~~~~~~~~~~~g~~~~v~g~~~  238 (249)
                      .+|+.+++++..+|..+||++.+++|+||++++.+.+++|++++++....+.   +.++++.+.+++++|+++++.|||+
T Consensus       365 ~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~  444 (449)
T KOG1304|consen  365 ALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYT  444 (449)
T ss_pred             HHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhh
Confidence            8999999999999999999999999999999999999999999999765443   3577889999999999999999999


Q ss_pred             HHHHH
Q 025701          239 SIQGI  243 (249)
Q Consensus       239 si~~i  243 (249)
                      ++.++
T Consensus       445 si~~i  449 (449)
T KOG1304|consen  445 SIKEI  449 (449)
T ss_pred             hhhcC
Confidence            99763

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=6.6e-36  Score=272.90  Aligned_cols=206  Identities=42%  Similarity=0.725  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccccccccccCCCchHH
Q 025701           20 AQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWL   99 (249)
Q Consensus        20 ~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~~~~~~~~   99 (249)
                      |+++|++.|||++|..+||||++||+|    ++|+|++..|+.+++.+|+.+++.||++|||+++++++.|++  .|.|+
T Consensus       231 f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~  304 (437)
T KOG1303|consen  231 FTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWL  304 (437)
T ss_pred             hhhhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhH
Confidence            999999999999999999999999998    779999999999999999999999999999999999999997  47899


Q ss_pred             HHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHHHHHHHHHHHHHHhCC
Q 025701          100 IDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFP  179 (249)
Q Consensus       100 ~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP  179 (249)
                      ...+|+++.+|++.+++++.+|..+.+|++...++++  +.             ++..++|.+.|+.+++.++++|+.+|
T Consensus       305 ~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~~-------------~~~~~~R~~~Rt~~v~~~~~vA~~~P  369 (437)
T KOG1303|consen  305 IALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--FK-------------KRSLVLRLLVRTFFVAVTTFVALSFP  369 (437)
T ss_pred             HHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--cc-------------ccccceeeehhhHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999998765332  10             12347899999999999999999999


Q ss_pred             ChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 025701          180 YFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVF-SYVCFIVSTFGLVGSIQGIISA  246 (249)
Q Consensus       180 ~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~-~~~g~~~~v~g~~~si~~ii~~  246 (249)
                      +|+++++++||+...++++++|+++|++++|+++++.+|+.++.+ .++|+++++.+..+++++++.+
T Consensus       370 fFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  370 FFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             ccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999888 7999999999999999998753

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=3.9e-35  Score=272.44  Aligned_cols=206  Identities=19%  Similarity=0.226  Sum_probs=175.0

Q ss_pred             HHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCccccccccccc-CCC
Q 025701           17 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFG-FYE   95 (249)
Q Consensus        17 ~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~-~~~   95 (249)
                      .+.+.++|+++|||.||.|.+|+++|||||  +.+|+.+++..++.++.++|..+|++||++||++++++|+.|++ .++
T Consensus       256 ~~~~~algi~~faF~~h~~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~  333 (467)
T PTZ00206        256 NRAIEGLGVFIFAYVFQITAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNE  333 (467)
T ss_pred             hHHHhhhhHHHhhhhhhhhhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCC
Confidence            357899999999999999999999999998  67999999999999999999999999999999999999999995 333


Q ss_pred             chHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHHHHHHHHHHHHH
Q 025701           96 PYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIA  175 (249)
Q Consensus        96 ~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~~~~~~~iA  175 (249)
                      +  ...++++++++.++.+||++.+|+|+.+++.+..+  .+         +.+       .|+|...+..++++++++|
T Consensus       334 ~--~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~--~~---------~~~-------~~~~~~~~~~l~~~~l~iA  393 (467)
T PTZ00206        334 P--AIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWD--AR---------KVA-------FWKHCIAVVTLSVVMLLCG  393 (467)
T ss_pred             c--hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCC--cc---------cCc-------hhhHHHHHHHHHHHHHHHH
Confidence            3  56778888999999999999999999999876321  11         011       2566666667777788899


Q ss_pred             HhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025701          176 MSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMN---IEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII  244 (249)
Q Consensus       176 i~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~---~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~ii  244 (249)
                      +++|+++.+++|+||++++.++|++|+++|++...   ++...++|+.+++++++|++.++.|||+++++.+
T Consensus       394 i~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        394 LFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             hccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            99999999999999999999999999999998432   2222235577899999999999999999999876

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=1.3e-33  Score=261.96  Aligned_cols=221  Identities=19%  Similarity=0.200  Sum_probs=184.2

Q ss_pred             CCcCccccCChhhHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCC
Q 025701            2 GSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD   81 (249)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~   81 (249)
                      ++.|+++ .+...++...+.+.++++|||++|..+|||++|||||    ++|+++...++.++..+|..+|+.||++|||
T Consensus       219 ~~~~~~~-~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~  293 (473)
T PLN03074        219 GQVEGVK-HSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGD  293 (473)
T ss_pred             cCCCCCC-CCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeech
Confidence            4556665 4445678889999999999999999999999999999    8999999999999999999999999999999


Q ss_pred             cccc--cccccccCCCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcc
Q 025701           82 NTPG--NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPL  159 (249)
Q Consensus        82 ~~~~--~il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~  159 (249)
                      ++++  +.+.|+|.  +. ...++++.+.++++.+|+++.+|..+.+|+....+  +    .             +..+.
T Consensus       294 ~~~~~s~~l~~lp~--~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~----~-------------k~~~~  351 (473)
T PLN03074        294 ELLTHSNAFSLLPR--SG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--D----T-------------KSICL  351 (473)
T ss_pred             hhhhchhHHhcCCC--ch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--c----c-------------ccHHH
Confidence            9864  56777873  22 46889999999999999999999999998875431  1    0             11367


Q ss_pred             hhhHHHHHHHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccc-------------hhhH--HHHHHHHH
Q 025701          160 RLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIE-------------AWTR--KWVMLRVF  224 (249)
Q Consensus       160 r~~~r~~~~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~-------------~~~~--~~~~~~~~  224 (249)
                      |+++|+.+++.++++|+.+|+|+++++|+||++++.++|++|+++|++.++++             ..++  +.+.++++
T Consensus       352 r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~i  431 (473)
T PLN03074        352 RALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFV  431 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHH
Confidence            89999999999999999999999999999999999999999999999854321             1112  23778888


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHhhhcC
Q 025701          225 SYV-CFIVSTFGLVGSIQGIISAKLS  249 (249)
Q Consensus       225 ~~~-g~~~~v~g~~~si~~ii~~~~~  249 (249)
                      +++ |+++++.|+|+|++++++++++
T Consensus       432 iv~~~~~g~~~G~~asi~~ii~~~~~  457 (473)
T PLN03074        432 VVWVLVVGFGFGGWASMTNFVRQIDT  457 (473)
T ss_pred             HHhhhhHhhccchHHHHHHHHHhhhh
Confidence            875 5555689999999999998864

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=99.97  E-value=3.6e-33  Score=254.37  Aligned_cols=216  Identities=25%  Similarity=0.372  Sum_probs=181.8

Q ss_pred             hhhHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccc-cchhhhhHHHHHHHHHHHHhhhhhhhhccCCccccccccc
Q 025701           12 SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPAN-QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTG   90 (249)
Q Consensus        12 ~~~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~-~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~   90 (249)
                      +..+++++++++|+++|||.||.+++|+++|||+|  ++ ++++++...++.+++++|+.+|.+||++||+++++|+++|
T Consensus       187 ~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~--~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n  264 (409)
T PF01490_consen  187 PFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDP--SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLN  264 (409)
T ss_pred             ccchhhHHHHhhhhhhhhhhcccccceeeeeccCC--ccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhc
Confidence            45678899999999999999999999999999998  44 4566999999999999999999999999999999999999


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHHHHHHHH
Q 025701           91 FGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVS  170 (249)
Q Consensus        91 ~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~~~~  170 (249)
                      ++++  ++...++++++.++++.+||++.+|.++.+|+.+..+...++...+    +     +...+++|...|+.+++.
T Consensus       265 ~~~~--~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~  333 (409)
T PF01490_consen  265 LPND--DVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPK----N-----TPSSRWLRYLIRIILVLL  333 (409)
T ss_pred             CCCc--ccccccccccchhhhhhccccccchhHhhhhhheeccccccccccc----c-----ccccceeeeeeecchhhh
Confidence            9953  3578999999999999999999999999999988643000000000    0     012257889999999999


Q ss_pred             HHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 025701          171 VTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKW-----VMLRVFSYVCFIVSTFGLVGSI  240 (249)
Q Consensus       171 ~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~-----~~~~~~~~~g~~~~v~g~~~si  240 (249)
                      ++++|+.+|+++++++++||++++.++|++|+++|++.+++++.+.++     ...+++.++|++.++.|+|+++
T Consensus       334 ~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  334 SFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             hhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            999999999999999999999999999999999999987766543322     3356778899999999999875

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=99.96  E-value=6.2e-29  Score=225.91  Aligned_cols=216  Identities=18%  Similarity=0.293  Sum_probs=182.7

Q ss_pred             hhhHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccccccccc
Q 025701           12 SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGF   91 (249)
Q Consensus        12 ~~~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~   91 (249)
                      +..++++.+.++++++|||.||.|+.++++|||||  +++++.++...+...+.++|..+|.+||++|||++.+|++.++
T Consensus       189 ~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~  266 (411)
T KOG1305|consen  189 NLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNY  266 (411)
T ss_pred             CcchhhhhhhhhhhhheeeeccccceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcC
Confidence            33444899999999999999999999999999998  8899999999999999999999999999999999999999999


Q ss_pred             cCCCch----HHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHHHHH
Q 025701           92 GFYEPY----WLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVY  167 (249)
Q Consensus        92 ~~~~~~----~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~  167 (249)
                      +..+..    +....++..+.++.+.++|+..+|+|..+++......|+++               ...+.++++.+..+
T Consensus       267 ~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~---------------~~s~~r~~~itl~l  331 (411)
T KOG1305|consen  267 DSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLT---------------SFSGKRHFVITLLL  331 (411)
T ss_pred             CcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCC---------------CccceehhHHHHHH
Confidence            864432    13578899999999999999999999999888765443321               01124555666677


Q ss_pred             HHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025701          168 VVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA  246 (249)
Q Consensus       168 ~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~ii~~  246 (249)
                      +.+..+.|+.+|+++.+++++||++++.++||+|+++|++.+|.  .+++....+...++|+..+.+|++.-+.++..+
T Consensus       332 l~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  332 LIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             HHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999999998776  333445566777899999999999988887764

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.94  E-value=4.8e-29  Score=215.75  Aligned_cols=220  Identities=19%  Similarity=0.253  Sum_probs=187.4

Q ss_pred             HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccccccccccCCC
Q 025701           16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYE   95 (249)
Q Consensus        16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~~~~   95 (249)
                      .-++-.++|+++|+|+.|..+|.++..|++|    ++|...+.++-...+++-..+|..||++||+++|+.|.+|+|.  
T Consensus       301 i~~fPisvG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~--  374 (524)
T KOG4303|consen  301 INTFPISVGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN--  374 (524)
T ss_pred             cccCceEEEEEEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc--
Confidence            3344557899999999999999999999999    8999999999999999999999999999999999999999983  


Q ss_pred             chHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHHHHHHHHHHHHH
Q 025701           96 PYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIA  175 (249)
Q Consensus        96 ~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~~~~~~~iA  175 (249)
                       .....++|+.+++..+.|||+-.+.+.+.+|+-+....|+..+ +.-+      .++.+.+-+...+|..+++++.+.|
T Consensus       375 -qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~F-pscy------s~Dg~Lk~WgltlR~~lvvfTllmA  446 (524)
T KOG4303|consen  375 -QSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPF-PSCY------SPDGSLKEWGLTLRIILVVFTLLMA  446 (524)
T ss_pred             -cchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCC-ceee------CCCcchhhheeeeeeHHHHHHHHHH
Confidence             2368899999999999999999999999999877665444222 1100      1122333344567899999999999


Q ss_pred             HhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 025701          176 MSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS  249 (249)
Q Consensus       176 i~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~ii~~~~~  249 (249)
                      +++|+|..+|+|+|++.++.++||+|++||++++.++.-..++..+..++++|+..++.|.|.|..++++++.+
T Consensus       447 i~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~  520 (524)
T KOG4303|consen  447 ISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINS  520 (524)
T ss_pred             HHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhc
Confidence            99999999999999999999999999999999987776666778888889999999999999999999998753

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.62  E-value=1.7e-14  Score=132.46  Aligned_cols=207  Identities=14%  Similarity=0.186  Sum_probs=143.7

Q ss_pred             hhHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCccccccccccc
Q 025701           13 IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFG   92 (249)
Q Consensus        13 ~~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~   92 (249)
                      +.++.+...++|+++|||+||+|++++++||+++  ++++.+|+...+..+..++|..+++++|..+|+++.++++++.+
T Consensus       189 ~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~--~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~  266 (415)
T COG0814         189 QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKN--SKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKE  266 (415)
T ss_pred             hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccC
Confidence            4677788899999999999999999999999997  44459999999999999999999999999999999999999997


Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhhccccchHH--------------HHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCc
Q 025701           93 FYEPYWLIDLANAFIVIHLVGGYQVYSQPIFA--------------HFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNP  158 (249)
Q Consensus        93 ~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~--------------~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~  158 (249)
                      ..+  . ..........+...+++.+.++.+.              .+++.....       ++ +    +   .++..+
T Consensus       267 ~~~--~-~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~-------~~-~----~---~r~~~~  328 (415)
T COG0814         267 QNI--S-LLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKS-------NS-K----P---GRKKTG  328 (415)
T ss_pred             chH--H-HHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhc-------cC-c----c---cchhhh
Confidence            422  1 1122222233333455555555543              333333220       00 0    0   011112


Q ss_pred             chhh--HHHHHHHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 025701          159 LRLC--FRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGL  236 (249)
Q Consensus       159 ~r~~--~r~~~~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~  236 (249)
                      ++.-  .....++....++...|..+.+++.+|+.....+.++.|...+.+....+.+..++...+++.++|+..++.-.
T Consensus       329 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~  408 (415)
T COG0814         329 LLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPF  408 (415)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHH
Confidence            2222  23334566777899999999999999999999999999999887764433332212455667788887777666


Q ss_pred             HHH
Q 025701          237 VGS  239 (249)
Q Consensus       237 ~~s  239 (249)
                      ++.
T Consensus       409 ~~~  411 (415)
T COG0814         409 LAT  411 (415)
T ss_pred             HHH
Confidence            544

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.13  E-value=6.5e-10  Score=100.91  Aligned_cols=172  Identities=9%  Similarity=0.024  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCccccc--------
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGN--------   86 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~--------   86 (249)
                      +..+.+.+++...++|++|.+++++.+|++||   +++.+|++..+..++.++|+.+........+.+.-.+        
T Consensus       176 ~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~  252 (381)
T TIGR00837       176 YWPYILSALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNL  252 (381)
T ss_pred             cHHHHHHHHHHHHHHHHcccccHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCCh
Confidence            45567889999999999999999999999864   5899999999999999999977665555444322111        


Q ss_pred             --ccccccC-CCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhH
Q 025701           87 --LLTGFGF-YEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCF  163 (249)
Q Consensus        87 --il~~~~~-~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~  163 (249)
                        ..+.+.. .+..|...+..+...+.+..|+.-.....+|.+.+.++.+.+                     +.+|...
T Consensus       253 ~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~---------------------~~~~~~~  311 (381)
T TIGR00837       253 DGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS---------------------KKGRFKT  311 (381)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---------------------cCCCchh
Confidence              1111111 013345667777888888999988888888887776654211                     0123334


Q ss_pred             HHHHHHHHHHHHHhCCChH-HHHHHHhhhhhhhhhhhhhhhhhhhhccc
Q 025701          164 RTVYVVSVTAIAMSFPYFN-QVLGVIGGVIFWPLTIYFPVEMYFKQMNI  211 (249)
Q Consensus       164 r~~~~~~~~~iAi~vP~~~-~vl~l~Ga~~~~~l~filP~l~~l~~~~~  211 (249)
                      ..+..+...++|.++|+.. ..++..| +.+..+.+++|++++.+.||+
T Consensus       312 ~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~  359 (381)
T TIGR00837       312 GLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK  359 (381)
T ss_pred             hhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            4556678888899999877 8999999 888899999999999987654

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.01  E-value=1.1e-08  Score=93.41  Aligned_cols=175  Identities=19%  Similarity=0.252  Sum_probs=128.1

Q ss_pred             hhhHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhh--hhhhhh---------ccC
Q 025701           12 SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGYA---------AFG   80 (249)
Q Consensus        12 ~~~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~--g~~GY~---------~fG   80 (249)
                      ...++...+.+++++++||+.|..+|++.+.+++   ++++.+|++..+..+..++|++.  .+.|=+         .-+
T Consensus       179 ~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~---d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~  255 (394)
T PF03222_consen  179 SPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGG---DPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQG  255 (394)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            3467777789999999999999999999999996   46899999999999999888754  333311         112


Q ss_pred             Ccccc--cccccccCCCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCc
Q 025701           81 DNTPG--NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNP  158 (249)
Q Consensus        81 ~~~~~--~il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~  158 (249)
                      ++..+  ..+.+..  +..+...++++.-.+.+.+||-=.....+|.+++.++.  +++                   +.
T Consensus       256 ~~~~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~  312 (394)
T PF03222_consen  256 GNVSALVSALANVS--GSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SS  312 (394)
T ss_pred             CChHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------cc
Confidence            22211  1222222  23356677788888999999988888899998887754  110                   12


Q ss_pred             chhhHHHHHHHHHHHHHHhCCC-hHHHHHHHhhhhhhhhhhhhhhhhhhhhcccch
Q 025701          159 LRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEA  213 (249)
Q Consensus       159 ~r~~~r~~~~~~~~~iAi~vP~-~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~  213 (249)
                      .|.....+..+..+++|+..|+ |-..+++.| ...+.+..++|+++..|.|++++
T Consensus       313 ~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~  367 (394)
T PF03222_consen  313 GRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP  367 (394)
T ss_pred             chHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence            3444445556778888999985 778999999 99999999999999999775543

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.84  E-value=6.1e-08  Score=88.72  Aligned_cols=190  Identities=12%  Similarity=0.118  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCc-----ccc-----ccc
Q 025701           19 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN-----TPG-----NLL   88 (249)
Q Consensus        19 ~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~-----~~~-----~il   88 (249)
                      ...+++++++||+.|.++|++.+.+++   +.+|.+|++..+..+..++|++-=......-+.+     .++     +++
T Consensus       183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~---~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l  259 (403)
T PRK15132        183 ALSAIPVIFTSFGFHGSVPSIVSYMGG---NIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL  259 (403)
T ss_pred             HHHHHHHHHHHhhCCcccHHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence            778999999999999999999999986   4689999999999999999874433333322222     111     233


Q ss_pred             ccccCC-CchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHHHHH
Q 025701           89 TGFGFY-EPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVY  167 (249)
Q Consensus        89 ~~~~~~-~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~  167 (249)
                      +.++.. +..+...++.+...+.+.+||-=.....+|.+.+.++.+  ++                   ...|...-.+.
T Consensus       260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--~~-------------------~~~r~~~~~l~  318 (403)
T PRK15132        260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR--NT-------------------VGGRLQTGLIT  318 (403)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--cc-------------------ccCCchhehhh
Confidence            333321 233566777788888889998888888899888877532  10                   12244444567


Q ss_pred             HHHHHHHHHhCCC-hHHHHHHHhhhhhhhhhhhhhhhhhhhhcccc---hhhH--HHHHHHHHHHHHHHHHH
Q 025701          168 VVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIE---AWTR--KWVMLRVFSYVCFIVST  233 (249)
Q Consensus       168 ~~~~~~iAi~vP~-~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~---~~~~--~~~~~~~~~~~g~~~~v  233 (249)
                      .+..+++|+..|+ |...+++.|.. .+.+.+++|+++-.|.|+++   .++.  .+...++..++|++..+
T Consensus       319 flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~  389 (403)
T PRK15132        319 FLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIG  389 (403)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHH
Confidence            7888999999996 67788888864 77999999999999877544   2221  23445555566665544

>PRK10483 tryptophan permease; Provisional

Probab=98.76  E-value=2.7e-07  Score=84.53  Aligned_cols=169  Identities=12%  Similarity=0.056  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHh--hhhhhhhc---------cCCcccc
Q 025701           17 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLF--CGGFGYAA---------FGDNTPG   85 (249)
Q Consensus        17 ~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~--~g~~GY~~---------fG~~~~~   85 (249)
                      ...+.+++++++||+.|.++|++.+.+++   +.++.+|++..+..+..++|++  ..+.|-..         -|+++ +
T Consensus       192 ~~~~~alPvl~~SFgfh~iIPsl~~y~~~---d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~  267 (414)
T PRK10483        192 PYLLMTLPFCLASFGYHGNVPSLMKYYGK---DPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-D  267 (414)
T ss_pred             HHHHHHHHHHHhhccCCCcchHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-H
Confidence            34678999999999999999999999987   3479999999999999999986  33333221         22222 1


Q ss_pred             cccccccCC-CchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHH
Q 025701           86 NLLTGFGFY-EPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR  164 (249)
Q Consensus        86 ~il~~~~~~-~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r  164 (249)
                      ..++.++.. +..+...+..+...+.+.+||-=.....+|.+.+.++.+  ++                   ...|...-
T Consensus       268 ~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~--~~-------------------~~~r~~~~  326 (414)
T PRK10483        268 VLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFD--DS-------------------AMGRFKTA  326 (414)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Cc-------------------cccceeee
Confidence            111222211 223455667777788889998888888899888877542  10                   01233333


Q ss_pred             HHHHHHHHHHHHhCCC-hHHHHHHHhhhhhhhhhhhhhhhhhhhhccc
Q 025701          165 TVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNI  211 (249)
Q Consensus       165 ~~~~~~~~~iAi~vP~-~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~  211 (249)
                      .+..+...++|+..|+ |-..++..|.. ++.+.-++|+++-.+.||+
T Consensus       327 ~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  373 (414)
T PRK10483        327 LLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR  373 (414)
T ss_pred             hhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence            4667888999999997 78899999977 6688899999999998764

>PRK09664 tryptophan permease TnaB; Provisional

Probab=98.64  E-value=1e-06  Score=80.69  Aligned_cols=169  Identities=12%  Similarity=0.091  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhh--hhhhh---------hccCCccccc
Q 025701           18 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGY---------AAFGDNTPGN   86 (249)
Q Consensus        18 ~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~--g~~GY---------~~fG~~~~~~   86 (249)
                      ..+.++|++.+||+.|.++|++.+.+++   +.++.+|++..+..+..++|++.  ...|=         ...|+++.+.
T Consensus       194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~---d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l  270 (415)
T PRK09664        194 YIFMALPVCLASFGFHGNIPSLIICYGK---RKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL  270 (415)
T ss_pred             HHHHHHHHHHHhhhCCCcchHHHHHhCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH
Confidence            4677999999999999999999999986   45888899998888888888532  22231         1223333321


Q ss_pred             ccccccCCCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHHHH
Q 025701           87 LLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTV  166 (249)
Q Consensus        87 il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~  166 (249)
                      +..-.+..+..+...+.++...+.+.+||-=.....+|.+.+.++.+  ++                   +..|...-.+
T Consensus       271 ~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~--~~-------------------~~~r~~~~~l  329 (415)
T PRK09664        271 VKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKID--NS-------------------HGGRFKTVLL  329 (415)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Cc-------------------cccceeeehh
Confidence            11111111234566777788888899999888888899888877542  10                   1123333346


Q ss_pred             HHHHHHHHHHhCCC-hHHHHHHHhhhhhhhhhhhhhhhhhhhhccc
Q 025701          167 YVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNI  211 (249)
Q Consensus       167 ~~~~~~~iAi~vP~-~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~  211 (249)
                      ..+...+.|+..|+ |=..++..|.. ++.+.-++|+++-.|.||+
T Consensus       330 tflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  374 (415)
T PRK09664        330 TFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK  374 (415)
T ss_pred             hHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            67888999999998 88899999996 5688999999999998765

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=98.49  E-value=2.9e-06  Score=78.12  Aligned_cols=199  Identities=10%  Similarity=0.073  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHccCchhHHHHHhh----hC---CCCcc--ccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcc----
Q 025701           17 WLVAQALGDIAFAYPYSLILIEIQDT----LK---SPPPA--NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT----   83 (249)
Q Consensus        17 ~~~~~~~gi~~faf~~h~~~~~I~~~----m~---~p~~~--~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~----   83 (249)
                      .....++|+++|||+-|.++++....    .+   ++  +  .+|-+|++..+..+..++|++.-...-..-+.+.    
T Consensus       209 ~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~--~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a  286 (443)
T PRK13629        209 VTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGR--DFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEA  286 (443)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHhcccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            44678999999999999999998887    43   22  2  5888899999999999998866555544444322    


Q ss_pred             -cc--cccccccC-CCc---------hHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhh-h-CCCCCCCCCccccCC
Q 025701           84 -PG--NLLTGFGF-YEP---------YWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE-K-FPENGFLNNEFFLKP  148 (249)
Q Consensus        84 -~~--~il~~~~~-~~~---------~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~-~-~p~~~~~~~~~~~~~  148 (249)
                       ++  +++..+.. .+.         .+...++.+...+.+..||-=....++|.++.+..+ . .++++        +.
T Consensus       287 ~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~--------~~  358 (443)
T PRK13629        287 KAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKT--------KV  358 (443)
T ss_pred             HHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------cc
Confidence             12  22222211 011         235566666677788889888888999999988742 1 11111        00


Q ss_pred             CCCCcCcCCcchhhHHHHHHHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHH
Q 025701          149 PLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVC  228 (249)
Q Consensus       149 p~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~g  228 (249)
                            +.+..+.....++++.++.+|+.-|++=.++.-+|+-....+.|++|...-.|...-++++ .+..++++.+.|
T Consensus       359 ------~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~G  431 (443)
T PRK13629        359 ------SLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIG  431 (443)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHH
Confidence                  1123344455667788899999999999999988888888999999987776654333322 123456666677


Q ss_pred             HHHH
Q 025701          229 FIVS  232 (249)
Q Consensus       229 ~~~~  232 (249)
                      ++..
T Consensus       432 l~~i  435 (443)
T PRK13629        432 LLTI  435 (443)
T ss_pred             HHHH
Confidence            6544

>TIGR00814 stp serine transporter

Probab=98.39  E-value=1.7e-06  Score=79.23  Aligned_cols=181  Identities=10%  Similarity=0.079  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHH----hhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcc-----cc
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQ----DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-----PG   85 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~----~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~-----~~   85 (249)
                      .+.+...++++.++||.+|.++++..    +|.+||--+.+|-+|++..+..+..++|+..-...-...+.+.     ++
T Consensus       184 ~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~  263 (397)
T TIGR00814       184 FLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQ  263 (397)
T ss_pred             hHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHc
Confidence            45678899999999999999999997    3344220025778899999999999988866555555555333     12


Q ss_pred             c--ccccccC-CCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhh-CCCCCCCCCccccCCCCCCcCcCCcchh
Q 025701           86 N--LLTGFGF-YEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEK-FPENGFLNNEFFLKPPLMPAFRWNPLRL  161 (249)
Q Consensus        86 ~--il~~~~~-~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~-~p~~~~~~~~~~~~~p~~~~~~~~~~r~  161 (249)
                      |  ++..+.. .+..+...+..+...+.+..||--....++|.++.++.+. .++++        +.+      .+..+.
T Consensus       264 nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~--------~~~------~~~~~~  329 (397)
T TIGR00814       264 NISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGK--------KIN------IRKLNR  329 (397)
T ss_pred             CcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccc--------ccC------HHHHHH
Confidence            2  1221111 1222455566666777888898888889999999887322 11111        000      022333


Q ss_pred             hHHHHHHHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhc
Q 025701          162 CFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQM  209 (249)
Q Consensus       162 ~~r~~~~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~  209 (249)
                      ....++++.++.+|+.-|++=+++.-+|+-....+.|++|...-.|..
T Consensus       330 ~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~  377 (397)
T TIGR00814       330 AIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVP  377 (397)
T ss_pred             HHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccH
Confidence            445566788899999999999999977888778999999987776653

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK11021 putative transporter; Provisional

Probab=98.07  E-value=0.00026  Score=64.91  Aligned_cols=65  Identities=17%  Similarity=0.339  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh--hhhccCC
Q 025701           14 EKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF--GYAAFGD   81 (249)
Q Consensus        14 ~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~--GY~~fG~   81 (249)
                      .++.+++.++....|+|.+-......-+|+|||   +|+.+|++..+..++.++|.+....  ++..+++
T Consensus       174 ~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~  240 (410)
T PRK11021        174 IEWSGLFAALGVMFWCFVGIEAFAHLASEFKNP---ERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGD  240 (410)
T ss_pred             ccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            456778899999999999999999999999998   4899999999999999999887654  3333444

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=97.92  E-value=0.00059  Score=63.32  Aligned_cols=57  Identities=9%  Similarity=0.146  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF   74 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~   74 (249)
                      ++..+..++....|+|.+-......-+|+|||   +|+.+|++..+..++.++|.++.+.
T Consensus       189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P---~r~iPrai~~s~~i~~v~Y~l~~~~  245 (445)
T PRK10644        189 TFGAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSSTA  245 (445)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCc---ccchhHHHHHHHHHHHHHHHHHHHH
Confidence            34456678888999999999999999999998   5899999999999999999877665

>PRK10655 potE putrescine transporter; Provisional

Probab=97.85  E-value=0.00085  Score=62.06  Aligned_cols=57  Identities=11%  Similarity=0.129  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhh
Q 025701           16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG   75 (249)
Q Consensus        16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~G   75 (249)
                      +.++..++....|+|.+-......-+|+|||   +|+.+|++..+..++.++|++.....
T Consensus       188 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iPrAi~~~~~~~~~~Y~l~~~~~  244 (438)
T PRK10655        188 FSAVGSSIAMTLWAFLGLESACANSDAVENP---ERNVPIAVLGGTLGAAVIYIVSTNVI  244 (438)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHhhCc---cccccHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778889999999999999999999998   48999999999999999998865443

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.85  E-value=0.0005  Score=64.38  Aligned_cols=49  Identities=10%  Similarity=0.070  Sum_probs=42.3

Q ss_pred             HHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 025701           25 DIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY   76 (249)
Q Consensus        25 i~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY   76 (249)
                      .+.|+|.+-.+....-+|+|||   +++.+|++..+..++.++|.+..+.-.
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~l~~~~~~  250 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNP---DKNYPIAILIAALGTVLIFVLGTLAIA  250 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999998   589999999999999999987554433

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=97.82  E-value=0.0019  Score=59.77  Aligned_cols=61  Identities=11%  Similarity=0.047  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhh
Q 025701           14 EKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA   77 (249)
Q Consensus        14 ~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~   77 (249)
                      .+..+++.++....|+|.+-......-+|+|||   +|+.+|++..+..++.++|+.....-..
T Consensus       184 ~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP---~r~iPrAi~~~~~iv~ilYil~~~~~~~  244 (435)
T PRK10435        184 TDGHAIIKSILLCLWAFVGVESAAVSTGMVKNP---KRTVPLATMLGTGLAGIIYIAATQVISG  244 (435)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc---cccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456788899999999999999999999999998   4799999999999999999887765443

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=97.67  E-value=0.0013  Score=61.21  Aligned_cols=57  Identities=19%  Similarity=0.178  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF   74 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~   74 (249)
                      .+.+++.++....|+|.+-.+.....+|+|||   +|+.+|++..+.....++|+...+.
T Consensus       179 g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPrai~~~~~~i~i~Yil~~~~  235 (446)
T PRK10197        179 GFGAVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRATNSVIWRISIFYLCSIFV  235 (446)
T ss_pred             cHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578899999999999999999999999998   4789999999999999999875544

>PRK10746 putative transport protein YifK; Provisional

Probab=97.67  E-value=0.0016  Score=60.83  Aligned_cols=57  Identities=18%  Similarity=0.060  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF   74 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~   74 (249)
                      ++.++..++....|+|.+--.....-+|+|||   +++.+|++..+.....++|+.....
T Consensus       198 g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP---~k~iP~Ai~~~~~~i~~~yv~~~~~  254 (461)
T PRK10746        198 GWKGFLTALCIVVASYQGVELIGITAGEAKNP---QVTLRSAVGKVLWRILIFYVGAIFV  254 (461)
T ss_pred             cHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667789999999999999999999999998   5999999998888888888765433

>PRK15049 L-asparagine permease; Provisional

Probab=97.67  E-value=0.0014  Score=61.82  Aligned_cols=59  Identities=15%  Similarity=0.139  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY   76 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY   76 (249)
                      .+...+.++....|+|.+--.....-+|+|||   +++.+|++..++....++|+.....-.
T Consensus       218 g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP---~r~iPrAi~~~~~~i~~~yi~~~~~~~  276 (499)
T PRK15049        218 GLLPALVLIQGVVFAFASIEMVGTAAGECKDP---QTMVPKAINSVIWRIGLFYVGSVVLLV  276 (499)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556677778999999999999999999998   478999999999888888876655433

>PRK10249 phenylalanine transporter; Provisional

Probab=97.63  E-value=0.00091  Score=62.41  Aligned_cols=57  Identities=14%  Similarity=0.129  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF   74 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~   74 (249)
                      .+.+++.++....|+|.+--.....-+|+|||   +++.+|++..+.....++|+.....
T Consensus       207 g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P---~k~iPrai~~~~~~~~~~y~~~~~~  263 (458)
T PRK10249        207 GWNGLILSLAVIMFSFGGLELIGITAAEARDP---EKSIPKAVNQVVYRILLFYIGSLVV  263 (458)
T ss_pred             cHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999998   5889999999999999999765443

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=97.62  E-value=0.0032  Score=58.89  Aligned_cols=61  Identities=11%  Similarity=0.119  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccC
Q 025701           16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG   80 (249)
Q Consensus        16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG   80 (249)
                      +.++.+++....|+|.+-.....+.+|.||+    ++.+|++..+..++.++|..+.+..+...+
T Consensus       194 ~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~  254 (468)
T TIGR03810       194 MTQVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT  254 (468)
T ss_pred             HHHHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            3445578889999999999999899999875    899999999999999999988776554443

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=97.57  E-value=0.0041  Score=58.16  Aligned_cols=56  Identities=13%  Similarity=0.212  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhh
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG   73 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~   73 (249)
                      ++.++..++....|+|.+--.....-+|+|||   +++.+|++..+..+...+|+....
T Consensus       195 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP---~r~iPrai~~~~~~~~~~Y~l~~~  250 (478)
T TIGR00913       195 RFKGVCSVFVTAAFSFGGTELVALTAGEAANP---RKSIPRAAKRTFWRILVFYILTLF  250 (478)
T ss_pred             hHHHHHHHHHHHHhhhccHHHHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            36678889999999999999999999999998   589999999999999999998654

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=97.57  E-value=0.0022  Score=59.46  Aligned_cols=56  Identities=14%  Similarity=0.243  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 025701           16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF   74 (249)
Q Consensus        16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~   74 (249)
                      +.+++.++....|+|.+-.......+|+|||   +|+.+|++..+..++.++|++....
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iP~Ai~~~~~i~~~~Y~l~~~~  249 (445)
T PRK11357        194 FMALLAGISATSWSYTGMASICYMTGEIKNP---GKTMPRALIGSCLLVLVLYTLLALV  249 (445)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCc---cccchHHHHHHHHHHHHHHHHHHHH
Confidence            5667788999999999999999999999998   4899999999999999999876654

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=97.57  E-value=0.0022  Score=59.98  Aligned_cols=59  Identities=15%  Similarity=0.122  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY   76 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY   76 (249)
                      .+.+++.++....|+|.+-......-+|+|||   +++.+|++..+.....++|.+....-+
T Consensus       209 g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP---~r~iPrai~~~~~~~~~~y~l~~~~~~  267 (469)
T PRK11049        209 GLSGFFAGFQIAVFAFVGIELVGTTAAETKDP---EKSLPRAINSIPIRIIMFYVFALIVIM  267 (469)
T ss_pred             cHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            34568899999999999999999999999998   478999998777777888876655443

>PRK10580 proY putative proline-specific permease; Provisional

Probab=97.53  E-value=0.0026  Score=59.25  Aligned_cols=56  Identities=18%  Similarity=0.142  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 025701           16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF   74 (249)
Q Consensus        16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~   74 (249)
                      +.+.+.++....|+|.+--......+|+|||   +++.+|++..+.....++|......
T Consensus       198 ~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~k~iPrAi~~~~~~~~~~y~~~~~~  253 (457)
T PRK10580        198 WLGMVMSLQMVMFAYGGIEIIGITAGEAKDP---EKSIPRAINSVPMRILVFYVGTLFV  253 (457)
T ss_pred             hHHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4467789999999999999999999999998   4789999998887777888766443

>PRK11387 S-methylmethionine transporter; Provisional

Probab=97.52  E-value=0.0029  Score=59.26  Aligned_cols=56  Identities=13%  Similarity=0.129  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 025701           16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF   74 (249)
Q Consensus        16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~   74 (249)
                      ..+++.++....|+|.+-......-+|+|||   +++.+|++..+..+...+|+.....
T Consensus       205 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~~~~~~  260 (471)
T PRK11387        205 GLPILMTMVAVNFAFSGTELIGIAAGETENP---AKVIPVAIRTTIARLVIFFVGTVLV  260 (471)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888999999999999999999998   5889999999999999999877654

>PRK10836 lysine transporter; Provisional

Probab=97.43  E-value=0.0051  Score=57.89  Aligned_cols=57  Identities=11%  Similarity=0.126  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhh
Q 025701           16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG   75 (249)
Q Consensus        16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~G   75 (249)
                      +...+.+.....|+|.+-......-+|+|||   +++.+|++..++....++|+.....-
T Consensus       204 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~v~~~Yvl~~~~~  260 (489)
T PRK10836        204 FAAMIGVAMIVGFSFQGTELIGIAAGESEDP---AKNIPRAVRQVFWRILLFYVFAILII  260 (489)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666789999999999999999998   58999999999999999999775443

>TIGR00909 2A0306 amino acid transporter

Probab=97.42  E-value=0.0052  Score=56.58  Aligned_cols=59  Identities=20%  Similarity=0.264  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY   76 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY   76 (249)
                      +..+++.++....|+|.+........+|+|||   +|+.+|++..+..+..++|+.....-.
T Consensus       193 ~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p---~r~ip~ai~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       193 GFGGVGAATALVFFAFIGFEAISTAAEEVKNP---ERDIPKAIILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHhhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            34567788999999999999999999999998   478999999999999999998765443

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=97.36  E-value=0.008  Score=55.14  Aligned_cols=108  Identities=16%  Similarity=0.167  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCccc---cccc---cccc
Q 025701           19 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP---GNLL---TGFG   92 (249)
Q Consensus        19 ~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~---~~il---~~~~   92 (249)
                      .+.++....|+|.+-.......+|+||     |+.+|++..+..++.++|......-....+++..   ++..   ..+.
T Consensus       190 ~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (426)
T PF13520_consen  190 FLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLA  264 (426)
T ss_dssp             HHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHH
T ss_pred             hhhHHHHHHhhcccccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhh
Confidence            578899999999999999999999875     7999999999999999999886655555444221   1211   1110


Q ss_pred             C-CCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHh
Q 025701           93 F-YEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWIC  131 (249)
Q Consensus        93 ~-~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~  131 (249)
                      + ....+...+..+...+..+.+..-.....-+.++.+-+
T Consensus       265 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~  304 (426)
T PF13520_consen  265 SAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR  304 (426)
T ss_dssp             HHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhcchhhccccccc
Confidence            0 01123444555555566665555554444455554443

...

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=97.35  E-value=0.01  Score=55.55  Aligned_cols=58  Identities=9%  Similarity=0.063  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY   76 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY   76 (249)
                      .+..+..++....|+|.+-.......+|+||+    ++.+|++..+..++.++|++......
T Consensus       197 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~----r~iPrai~~~~~i~~~~Yil~~~~~~  254 (473)
T TIGR00905       197 VFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNK----SDVGKATVLGTLGALVIYILITLLSL  254 (473)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc----ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567788999999999999999999999984    99999999999999999987766533

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.35  E-value=0.0068  Score=56.83  Aligned_cols=53  Identities=8%  Similarity=0.009  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhh
Q 025701           17 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG   72 (249)
Q Consensus        17 ~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g   72 (249)
                      +..+.++-...|+|.+-......-+|+|||   +|+.+|++..+..+..+++.+..
T Consensus       217 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~r~iP~Ai~~s~~i~~~~~~~~~  269 (482)
T TIGR00907       217 FAFLLGLLNPAWSMTGYDGTAHMAEEIENP---EVVGPRAIIGAVAIGIVTGFCFN  269 (482)
T ss_pred             hhhhhhhhhhHHHhcCcchhhHHHHhcCCh---hhhcCHHHHHHHHHHHHHHHHHH
Confidence            345566666789999999999999999998   58999999999887766544333

>PRK10238 aromatic amino acid transporter; Provisional

Probab=97.31  E-value=0.0075  Score=56.27  Aligned_cols=53  Identities=19%  Similarity=0.214  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhh
Q 025701           16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC   71 (249)
Q Consensus        16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~   71 (249)
                      +.++..+++...|+|.+--......+|+|||   +|+.+|++..+.....++|+..
T Consensus       199 ~~~~~~~~~~~~~af~G~e~~~~~aeE~knP---~r~iPrAi~~~~~~i~~~y~~~  251 (456)
T PRK10238        199 FTGLVMMMAIIMFSFGGLELVGITAAEADNP---EQSIPKATNQVIYRILIFYIGS  251 (456)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHH
Confidence            4466678888999999999999999999998   4889999988887777777654

>TIGR00908 2A0305 ethanolamine permease

Probab=97.31  E-value=0.0071  Score=55.99  Aligned_cols=56  Identities=11%  Similarity=-0.068  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhh
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG   73 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~   73 (249)
                      .+.+++.++....|+|.+.......-+|+|||   +++.+|++..+..++..+|.....
T Consensus       189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P---~r~iprai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       189 AYVGVFAAIPFAIWFFLAVEGVAMAAEETKNP---KRDIPRGLIGAILTLLALAAGILV  244 (442)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---ccccCHHHHHHHHHHHHHHHHHHH
Confidence            34577888888999999999999999999998   488999999999988888876644

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=97.29  E-value=0.0068  Score=56.33  Aligned_cols=59  Identities=17%  Similarity=0.107  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY   76 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY   76 (249)
                      .+.+++.++....|+|.+-......-+|+|||   +++.+|++..+......+|+.......
T Consensus       199 g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P---~r~iPrAi~~~~~~~~~~y~l~~~~~~  257 (452)
T TIGR01773       199 GIGAVLLAILVTMFSFMGTEIVTIAAAESSNP---IKSITRATNSVIWRIIVFYLGSIFIVV  257 (452)
T ss_pred             cHHHHHHHHHHHHHHhccHHHHhHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            34568889999999999999999999999998   479999998888888888887644333

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=97.21  E-value=0.0067  Score=58.14  Aligned_cols=58  Identities=12%  Similarity=0.116  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhh
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG   75 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~G   75 (249)
                      .+.+++.+.....|+|.+--.....-+|+|||   +++.+|++..+..++.++|.++...-
T Consensus       229 g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP---~r~iP~aii~sl~i~~vlY~lv~~~l  286 (557)
T TIGR00906       229 GFTGVLSGAATCFFAFIGFDAIATTGEEVKNP---QRAIPIGIVTSLLVCFVAYFLMSAAL  286 (557)
T ss_pred             chHHHHHHHHHHHHHHhhHHHHHHhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHH
Confidence            45678889999999999999999999999998   48899999999999999998776543

>TIGR00911 2A0308 L-type amino acid transporter

Probab=97.15  E-value=0.007  Score=57.07  Aligned_cols=58  Identities=19%  Similarity=0.104  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhh
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG   75 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~G   75 (249)
                      +..++..++....|+|.+-.......+|+|||   +++.+|++..+..++.++|++....-
T Consensus       233 ~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~s~~~v~~~Y~l~~~a~  290 (501)
T TIGR00911       233 SAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNP---YRTLPIAIIISMPIVTFIYVLTNIAY  290 (501)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCc---hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677789999999999999999999999998   48899999999999999999885443

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=97.02  E-value=0.026  Score=53.25  Aligned_cols=54  Identities=19%  Similarity=0.106  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhh
Q 025701           17 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG   73 (249)
Q Consensus        17 ~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~   73 (249)
                      ++.+.++....|+|.+--......+|+|||   +++.+|++..+...+..+|.+..+
T Consensus       211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p---~~~~p~ai~~~~~~~~~~y~l~~~  264 (496)
T PRK15238        211 IAVLSFVVFAIFAYGGIEAVGGLVDKTENP---EKNFPKGIIIAAIVISIGYSLAIF  264 (496)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHhccCC---CccccHHHHHHHHHHHHHHHHHHH
Confidence            456677888899999999999999999998   589999999999999999987644

>TIGR00930 2a30 K-Cl cotransporter

Probab=96.94  E-value=0.04  Score=56.09  Aligned_cols=53  Identities=25%  Similarity=0.262  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 025701           19 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF   74 (249)
Q Consensus        19 ~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~   74 (249)
                      ++..++++.+||.+-.....+-.|+|||   +++.+|++..|..+++++|+++.+.
T Consensus       282 f~~~~ai~F~A~tGi~agan~sgElKnP---~r~IPratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       282 FFSLFGIFFPSVTGILAGANISGDLKDP---QKAIPKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCh---hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6678888888999999999999999999   4899999999999999999988753

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=96.90  E-value=0.031  Score=51.66  Aligned_cols=63  Identities=16%  Similarity=0.210  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCC
Q 025701           16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD   81 (249)
Q Consensus        16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~   81 (249)
                      ...+..++....++|.|-......-+|+|||   +++.+|++..++.++..+|+.....-....++
T Consensus       200 ~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp---~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         200 FGGILAAILLAFFAFTGFEAIATLAEEVKNP---KRTIPRAIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHHHHHHHHHHHhhcHHHHHHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            3467889999999999999999999999998   47799999999999999999888877776665

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=96.69  E-value=0.019  Score=53.54  Aligned_cols=182  Identities=13%  Similarity=0.129  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhcc--CCccccccc-cc
Q 025701           14 EKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAF--GDNTPGNLL-TG   90 (249)
Q Consensus        14 ~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~f--G~~~~~~il-~~   90 (249)
                      .+..++-.++=.-.|||.+=.++=.+-+|+|||   +|+++|++..|+.+++++|+.+=+..+-.-  .+-.+++.. ..
T Consensus       201 ~~~g~i~lafysglfa~~GWd~lN~vteEiknP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~  277 (479)
T KOG1287|consen  201 TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVT  277 (479)
T ss_pred             CchHHHHHHHHHhhhcccCchhhccchHhhcCc---cccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHH
Confidence            444456677778899999999999999999999   699999999999999999998765544322  221111111 11


Q ss_pred             ccCC-CchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhh-CCCC-CCCCCccccCCCCCCcCcCCcchhhHHHHH
Q 025701           91 FGFY-EPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEK-FPEN-GFLNNEFFLKPPLMPAFRWNPLRLCFRTVY  167 (249)
Q Consensus        91 ~~~~-~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~-~p~~-~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~  167 (249)
                      +.+. -+.+. -+.-+++.++.+.+.--.++..-..+...-++. .|+. ...++           ++..+ +  ...++
T Consensus       278 Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~-----------~~~TP-~--~allf  342 (479)
T KOG1287|consen  278 FADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISV-----------RRFTP-R--PALLF  342 (479)
T ss_pred             HHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcC-----------CCCCC-h--HHHHH
Confidence            1110 01121 223333444444433222222111111111110 1110 00000           00001 1  11223


Q ss_pred             HHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccch
Q 025701          168 VVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEA  213 (249)
Q Consensus       168 ~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~  213 (249)
                      -....++...+.|+..+++.++=.......+.+=+++|+|.|+++.
T Consensus       343 ~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~  388 (479)
T KOG1287|consen  343 SGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL  388 (479)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            3444445566678999999998888888888888999999987763

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=96.62  E-value=0.3  Score=45.74  Aligned_cols=58  Identities=7%  Similarity=-0.181  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 025701           16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY   76 (249)
Q Consensus        16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY   76 (249)
                      ...+..+.-...|+|.+--....+-+|+|||   +++.+|++..+..+...+|..+-+.-.
T Consensus       212 ~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP---~r~iPrai~~s~~i~~~~~~~~~~~~~  269 (475)
T TIGR03428       212 YGAFLVSGLMAAYVMVGFGSAGELSEETKNP---RRVAPRTILTALSVSALGGGLMILGAL  269 (475)
T ss_pred             HHHHHHHHHHHHHHhcCcchHHHHHHHhcCc---chhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567777889999999999999999998   589999999999888776655444333

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=96.62  E-value=0.032  Score=52.90  Aligned_cols=50  Identities=14%  Similarity=0.060  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhh
Q 025701           20 AQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG   72 (249)
Q Consensus        20 ~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g   72 (249)
                      ...+..+.|+|.+--.....-+|+|||   +|+++|++..+..++.++|.+..
T Consensus       197 ~~~~~~~~faf~G~E~~a~~a~E~knP---~r~~PrAi~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       197 LVVFVAFIGAYMGVEASASHINELENP---GRDYPLAMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHccCC---cccccHHHHHHHHHHHHHHHHHH
Confidence            344445689999999999999999998   48999999999988888887643

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=95.23  E-value=0.017  Score=54.02  Aligned_cols=65  Identities=18%  Similarity=0.144  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCC
Q 025701           14 EKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD   81 (249)
Q Consensus        14 ~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~   81 (249)
                      .++.+++.++....++|.+-......-+|.|||   +|+.+|++..+.....++|+.....-=...+.
T Consensus       197 ~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P---~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~  261 (478)
T PF00324_consen  197 GGFSGFFAALVFAFFAFVGFESIAILAEEAKNP---RKTIPRATLLSVLRIGVFYVLTSYALTLAVPY  261 (478)
T ss_pred             cchhHHHHhhhhhhcccccccccccccccCCCc---hhhhhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence            457888999999999999999999999999998   58999999999999999998776655445543

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=94.81  E-value=0.42  Score=44.35  Aligned_cols=189  Identities=12%  Similarity=0.118  Sum_probs=102.5

Q ss_pred             cCccccCCh-----hhHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhH-----HHHHHHHHHHHhhhh
Q 025701            4 FSGVSTTTS-----IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKAST-----MSIITTTIFYLFCGG   73 (249)
Q Consensus         4 ~~~~~~~~~-----~~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~-----~s~~i~~~~y~~~g~   73 (249)
                      ..|+|+.++     +..+.+++.++-+.+|||++.-.+=--..|-|||   ++..+|+..     ....-...+..++.+
T Consensus       185 ~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP---~k~ipkAin~V~~RI~iFYvgsl~vi~~l  261 (462)
T COG1113         185 AAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDP---EKAIPKAINSVIWRILIFYVGSLFVILSL  261 (462)
T ss_pred             CccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcCh---hhHHHHHHhhhhHHHHHHHHHHHHHHhee
Confidence            345554444     3456778899999999999999999999999999   466777654     344455555667888


Q ss_pred             hhhhccCCcccc--cccccccCCCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhh-CCCCCCCCCccccCCCC
Q 025701           74 FGYAAFGDNTPG--NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEK-FPENGFLNNEFFLKPPL  150 (249)
Q Consensus        74 ~GY~~fG~~~~~--~il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~-~p~~~~~~~~~~~~~p~  150 (249)
                      ..+-.++++.++  .+.+.+.  .| +...+.|..+....+.+.==-.+..-.++..+-... -|+ .+ .|-...++| 
T Consensus       262 ~PW~~~~~~~SPFV~~f~~iG--i~-~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk-~~-~klsk~gVP-  335 (462)
T COG1113         262 YPWNQIGEDGSPFVTVFSLIG--IP-FAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPK-AF-AKLSKRGVP-  335 (462)
T ss_pred             ccccccCCCCCcHHHHHHHcC--Cc-ccccceeEEEeechhhcccccccccchHHHHHhhcCcccH-hH-hhccccCCC-
Confidence            888777776655  3334443  12 223333333222222221112223333333332111 111 00 000001222 


Q ss_pred             CCcCcCCcchhhHHHHHHHHHHHHHHhCCChHHHHHHHhhhhhhh--hhhhhhhhhhhhhcc
Q 025701          151 MPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWP--LTIYFPVEMYFKQMN  210 (249)
Q Consensus       151 ~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~~~~vl~l~Ga~~~~~--l~filP~l~~l~~~~  210 (249)
                             +.-+.+.....++..++-...|  +.++.++=+..+..  ....+=.+.|+|.||
T Consensus       336 -------~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk  388 (462)
T COG1113         336 -------VNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK  388 (462)
T ss_pred             -------HHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   3334455566677777888888  55555554444333  333344566777665

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=93.76  E-value=0.89  Score=40.75  Aligned_cols=64  Identities=19%  Similarity=0.288  Sum_probs=50.3

Q ss_pred             HHHHHHHH-HHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcc
Q 025701           16 MWLVAQAL-GDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT   83 (249)
Q Consensus        16 ~~~~~~~~-gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~   83 (249)
                      ..+.+.+. ....++|.+.....-...++|||    ++.+|+...+..++..+|...-......+|.+.
T Consensus       177 ~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~  241 (359)
T TIGR00912       177 LSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV  241 (359)
T ss_pred             cHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence            34444444 37888998888888888899987    889999999999999999987777777777543

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=84.36  E-value=10  Score=36.56  Aligned_cols=112  Identities=14%  Similarity=0.077  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh-hhhccCCc--cccccccccc
Q 025701           16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF-GYAAFGDN--TPGNLLTGFG   92 (249)
Q Consensus        16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~-GY~~fG~~--~~~~il~~~~   92 (249)
                      +.++++++-+..|+|.+--.+-..-+|-|||   +++.+++++.++..+..+|+...+. |-..=.++  ..++....-+
T Consensus       231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP---~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~sp  307 (554)
T KOG1286|consen  231 FKGVLSGAATAFFSFIGFELVATTAEEAKNP---RKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASP  307 (554)
T ss_pred             cceeeHHHHHHHHHHhhHHHHHHHHHhccCC---cccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccH
Confidence            6677889999999999999999999999999   5999999999999999999876653 22222222  2222210000


Q ss_pred             CC---CchHHHH---HHHHHHHHHHHhhhhccccchHHHHHHHH
Q 025701           93 FY---EPYWLID---LANAFIVIHLVGGYQVYSQPIFAHFEKWI  130 (249)
Q Consensus        93 ~~---~~~~~~~---i~~i~~~i~~~~s~pl~~~p~~~~~e~~~  130 (249)
                      ..   +..+...   +.|+..++.++.+---..++.-..+..+-
T Consensus       308 F~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA  351 (554)
T KOG1286|consen  308 FVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALA  351 (554)
T ss_pred             HHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHH
Confidence            00   0011222   66666666666555445556666655553

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=81.62  E-value=35  Score=32.67  Aligned_cols=66  Identities=11%  Similarity=-0.029  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcc
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT   83 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~   83 (249)
                      +-|.+.-++-.-+..+.|--....+.+|-||+   .++-+|++..+..+..++=.++-+.-..+-++|.
T Consensus       250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nA---sk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~  315 (550)
T KOG1289|consen  250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNA---SKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL  315 (550)
T ss_pred             chHHHHHhhccceeEEeccCchHHHHHHhcch---hhhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence            66777777888888888888889999999997   4888999998888887776555555555555443

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=81.24  E-value=20  Score=34.28  Aligned_cols=51  Identities=14%  Similarity=0.184  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHH
Q 025701           16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYL   69 (249)
Q Consensus        16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~   69 (249)
                      +.++...+-+..|||.+.-.+---..|=+||   ++..+|+++-.+.=..++|+
T Consensus       233 f~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP---~K~iPkAik~vfwRIl~FYi  283 (541)
T COG0833         233 FKGFCSVFVIAAFSFSGTELVGLAAGESENP---RKSIPKAIKQVFWRILLFYI  283 (541)
T ss_pred             hHHHHHHHhhheeeeeceeeeeeeecccCCc---hhhhHHHHHHHHHHHHHHHH
Confidence            6777888888999999999888888999998   58999999988877777775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.34
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.09
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	97.85

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.34  E-value=4e-06  Score=75.72  Aligned_cols=64  Identities=8%  Similarity=0.105  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCC
Q 025701           15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD   81 (249)
Q Consensus        15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~   81 (249)
                      +..+++.++....|+|.+........+|+|||   +++.+|++..+..++.++|......-....+.
T Consensus       189 ~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          189 TFGAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN  252 (445)
T ss_dssp             ----HHHHHHHHHHTTTTTTHHHHGGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            36678889999999999999999999999998   58899999999999999999887766655554

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.09  E-value=6e-05  Score=67.94  Aligned_cols=66  Identities=11%  Similarity=0.094  Sum_probs=55.6

Q ss_pred             hhhHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccC
Q 025701           12 SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG   80 (249)
Q Consensus        12 ~~~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG   80 (249)
                      .+.++.+++.++....|+|.+........+|+|||   +++.+|++..+..++.++|....+.-....+
T Consensus       183 ~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          183 APSAVSGMIFASAIFFLSYMGFGVITNASEHIENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             SHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            34456678889999999999999999999999998   4779999999999999999987766554444

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=97.85  E-value=0.00027  Score=64.84  Aligned_cols=60  Identities=8%  Similarity=-0.005  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCc
Q 025701           20 AQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN   82 (249)
Q Consensus        20 ~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~   82 (249)
                      +.++....|+|.+........+|+|||   +++.+|++..+..++.++|+...+.-....+++
T Consensus       204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P---~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          204 LVVFVAFILSYMGVEASATHVNEMSNP---GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             TTTHHHHHHHHTTGGGGTGGGSSSSCC---TTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            345777899999999999999999998   488999999999999999998877666655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00