Citrus Sinensis ID: 025704

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MFWVLTLLSWYQDSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGASSSSEDLRTQIADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSLEQFFGCV
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHccccEEEEEcccEEcccccHHHHHcccEEEccHHHHHHHHHHcccEEEEEEEccHHHHHHHHHHHHHcccccccccccccEEEcccccccccEEEEccccEEEcccHHHHHHHHHHcccEEEEccccccccccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHccccEEcHHHHHEEEEcccHHHHHcccEccHHHHHHHHHHHHHccEEEEEEEcccHcHHHHHHHHHHccccccccccccEEEEEccccccHHHHHHccccccccccHHHHHHHHHHcccEEEEcccccccccccccccccHHHHHccc
Coil and Loop (DISEMBL)
MFWVLTLLSWYQDSRSVGAIAGLALAIVFTWrmfrspgapqrrqpkrqapstsnsvgstqanatstpfgasssseDLRTQIADAlfqpvkptlGQVVRQKLSEGRKVTCRLLGVIleescpeelQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAgvftsgglvkdkVLFCSteigrtsfvrqlepdwhidtnpEIVSQLARFIKYQLhispnrpersaanvfsspsleqffgcv
Flexible Loop (DISEMBL)
MFWVLTLLSWYQDSRSVGAIAGLALAIVFTWRMFRSpgapqrrqpkrqapstsnsvgstqanatstpfgasssSEDLRTQIADAlfqpvkptlgqvvrqklsegrkVTCRLLGVIleescpeelqkqVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETagvftsgglvkDKVLFCSTEIGRtsfvrqlepdwhidTNPEIVSQLARFIKYQLHISPNrpersaanvfsspsleqffgcv
Low Complexity Region (SEG)
MFWVLTLLSWYQDSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGASSSSEDLRTQIADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSLEQFFGCV
Disordered region (IsUnstruct)
*FWVLTLLSWYQDSRSVGAIAGLALAIVFTWRMF**********************************************IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHI*************************
Disordered Region (DISOPRED)
**WVLTLLSWYQDSRSVGAIAGLALAIVFTW********************************************************PVKP****************TCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHIS***********FSSPSLEQFFGCV
Disordered Region (DISEMBL)
MFWVLTLLSWYQDSRSVGAIAGLALAIVFTWRMFRSP***************************************LRTQIADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSLEQFFGCV
Disordered Region (DISPRO)
MFWVLTLLSWYQDSRSVGAIAGLALAIVFTWRMFRS*****************************************RTQIADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPE*****************C*
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFWVLTLLSWYQDSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGASSSSEDLRTQIADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSLEQFFGCV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
Q9LSX7	283	Peroxisome biogenesis pro	yes	no	0.951	0.837	0.674	7e-89

>sp|Q9LSX7|PEX22_ARATH Peroxisome biogenesis protein 22 OS=Arabidopsis thaliana GN=PEX22 PE=1 SV=1

 Score =  326 bits (836), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 164/243 (67%), Positives = 194/243 (79%), Gaps = 6/243 (2%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATS------T 66
           DSRS+GAIAGLA+A++FTWR  R+PG  ++R+  ++    + +  +  A + S       
Sbjct: 41  DSRSIGAIAGLAIAVIFTWRAIRTPGEQRQRRQPKRRIHNAETSSAAAAASQSNLASSVA 100

Query: 67  PFGASSSSEDLRTQIADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQK 126
           P  +S   ++    + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEE+ PEELQK
Sbjct: 101 PEVSSPREDNAVQDVVDQFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEETSPEELQK 160

Query: 127 QVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCS 186
           Q TV+SSVLE LLEITK+ DLYLMERVLD+ESE KVL ALE AGVFTSGGLVKDKVLFCS
Sbjct: 161 QATVRSSVLEVLLEITKYSDLYLMERVLDDESEAKVLQALENAGVFTSGGLVKDKVLFCS 220

Query: 187 TEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSLEQFF 246
           TEIGRTSFVRQLEPDWHIDTNPEI +QLARFIKYQLH++  +PER+A NVF+S S+EQFF
Sbjct: 221 TEIGRTSFVRQLEPDWHIDTNPEISTQLARFIKYQLHVATVKPERTAPNVFTSQSIEQFF 280

Query: 247 GCV 249
           G V
Sbjct: 281 GSV 283

May tethered PEX4 to the peroxisome membrane and may be involved in a late step of the matrix protein import. Does not play a role in the biogenesis of the peroxisomal membrane.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
255549355	279	conserved hypothetical protein [Ricinus	0.967	0.863	0.831	1e-112
224132998	273	predicted protein [Populus trichocarpa]	0.943	0.860	0.805	1e-104
225447340	275	PREDICTED: peroxisome biogenesis protein	0.951	0.861	0.803	1e-104
388498658	264	unknown [Lotus japonicus]	0.975	0.920	0.771	1e-103
118481139	275	unknown [Populus trichocarpa]	0.943	0.854	0.799	1e-103
356550004	280	PREDICTED: peroxisome biogenesis protein	0.951	0.846	0.766	1e-102
356543742	278	PREDICTED: peroxisome biogenesis protein	0.951	0.852	0.760	1e-101
118481087	275	unknown [Populus trichocarpa]	0.951	0.861	0.788	1e-100
449468331	276	PREDICTED: peroxisome biogenesis protein	0.951	0.858	0.754	1e-100
217074268	275	unknown [Medicago truncatula]	0.947	0.858	0.742	2e-97

>gi|255549355|ref|XP_002515731.1| conserved hypothetical protein [Ricinus communis] gi|223545168|gb|EEF46678.1| conserved hypothetical protein [Ricinus communis]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/243 (83%), Positives = 217/243 (89%), Gaps = 2/243 (0%)

Query: 8   LSWYQ-DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATST 66
           +S+Y  DSRSVGAIAGLA+AIVFTWRM RSPG PQRRQPKRQAP++S SV + Q+N+T  
Sbjct: 36  ISFYNLDSRSVGAIAGLAVAIVFTWRMLRSPGGPQRRQPKRQAPTSSTSVVTPQSNSTLM 95

Query: 67  PFGASSSSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQ 125
           P G  SSSEDLR Q + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEES PEELQ
Sbjct: 96  PSGVCSSSEDLRAQNVVDNFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEESTPEELQ 155

Query: 126 KQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFC 185
            Q TVKSSVLE LLEITKFCDLYLMERVLD+ESE+KVL ALE AGVFTSGGLVKDKVLFC
Sbjct: 156 TQATVKSSVLEVLLEITKFCDLYLMERVLDDESEQKVLAALENAGVFTSGGLVKDKVLFC 215

Query: 186 STEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSLEQF 245
           STE GR+SFVRQLEPDWHIDTNPEIVSQL+RFIKYQLHISP RPERS ANVFSSP+LEQF
Sbjct: 216 STENGRSSFVRQLEPDWHIDTNPEIVSQLSRFIKYQLHISPIRPERSCANVFSSPTLEQF 275

Query: 246 FGC 248
           FGC
Sbjct: 276 FGC 278

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132998|ref|XP_002327932.1| predicted protein [Populus trichocarpa] gi|222837341|gb|EEE75720.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/237 (80%), Positives = 207/237 (87%), Gaps = 2/237 (0%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGA-S 71
           DSRSVGA+AGLA+AIVFTWR  RS   PQRRQPKRQAP+TS+SV +TQ NA S P G   
Sbjct: 35  DSRSVGAVAGLAVAIVFTWRWLRSNSGPQRRQPKRQAPTTSSSVVTTQPNAVSIPSGGVC 94

Query: 72  SSSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTV 130
           SSSEDLR Q + D  FQ VKP+LGQ+VRQKLSEGRKVTCRLLGVILEES PEELQ Q TV
Sbjct: 95  SSSEDLRVQNVVDEFFQTVKPSLGQIVRQKLSEGRKVTCRLLGVILEESSPEELQSQATV 154

Query: 131 KSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIG 190
           +SSVLE LLEITKFCD+YLMERVLD+ESE+KVL ALE AGVFTSGGLVKDKVLFCSTE G
Sbjct: 155 RSSVLEVLLEITKFCDVYLMERVLDDESEQKVLAALENAGVFTSGGLVKDKVLFCSTETG 214

Query: 191 RTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSLEQFFG 247
           R+SFVRQLEPDWHIDTNPE++ QLARFIKYQL ISP RPER+AANV SSPSLEQFFG
Sbjct: 215 RSSFVRQLEPDWHIDTNPEVIFQLARFIKYQLQISPIRPERTAANVLSSPSLEQFFG 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447340|ref|XP_002280526.1| PREDICTED: peroxisome biogenesis protein 22 [Vitis vinifera] gi|297739312|emb|CBI28963.3| unnamed protein product [Vitis vinifera]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/239 (80%), Positives = 212/239 (88%), Gaps = 2/239 (0%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGASS 72
           DSRSVGA+AG A+A++FTWR+ RSP  PQRRQPKRQAP+ S+S  S+Q+  T  P G  S
Sbjct: 37  DSRSVGALAGFAVAMIFTWRLLRSPSGPQRRQPKRQAPAPSSSGVSSQSTTTLAPSGVCS 96

Query: 73  SSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQ-KQVTV 130
           SSED R Q + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEES PEELQ KQ TV
Sbjct: 97  SSEDSRAQNVIDEFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEESSPEELQAKQATV 156

Query: 131 KSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIG 190
           +SSVLE LLEITKFCDLYLMERVLD+ESE+KVLLALE AGVFTSGGLVKDKVLFCSTE G
Sbjct: 157 RSSVLEVLLEITKFCDLYLMERVLDDESERKVLLALEDAGVFTSGGLVKDKVLFCSTETG 216

Query: 191 RTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSLEQFFGCV 249
           R+SFVRQLEPDWHIDTNPE+VSQLARFIKYQLHISP RPER+A+NVF++PSLEQFFGCV
Sbjct: 217 RSSFVRQLEPDWHIDTNPEVVSQLARFIKYQLHISPFRPERTASNVFTAPSLEQFFGCV 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498658|gb|AFK37395.1| unknown [Lotus japonicus]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/245 (77%), Positives = 212/245 (86%), Gaps = 2/245 (0%)

Query: 5   LTL-LSWYQDSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANA 63
           LTL +S   DS S+GA+AGLA+AI FTWR+ RSPG PQ RQ KRQ  ++SN   ST +NA
Sbjct: 18  LTLKISNIIDSHSIGAVAGLAIAIFFTWRLLRSPGEPQPRQRKRQTTTSSNPGVSTHSNA 77

Query: 64  TSTPFGASSSSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPE 122
           +  P G  S S D R Q + D LFQPVKPTLGQ+VRQKL+EGRKVTCRLLGVILEE+ PE
Sbjct: 78  SVVPSGVRSPSGDSRAQNVVDELFQPVKPTLGQIVRQKLNEGRKVTCRLLGVILEETSPE 137

Query: 123 ELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKV 182
           ELQKQVTVKS+VLE LLEITKFCDLYLMERVLD+ESEK+VL+ALE AGVFTSGGLVKDKV
Sbjct: 138 ELQKQVTVKSTVLEVLLEITKFCDLYLMERVLDDESEKRVLVALEDAGVFTSGGLVKDKV 197

Query: 183 LFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSL 242
           LFCSTEIGR+SFVRQLEPDWHID+NPEI+SQLARFIKYQLH+SP R ER+AANVFS+PSL
Sbjct: 198 LFCSTEIGRSSFVRQLEPDWHIDSNPEIISQLARFIKYQLHVSPFRTERTAANVFSAPSL 257

Query: 243 EQFFG 247
           EQFFG
Sbjct: 258 EQFFG 262

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481139|gb|ABK92522.1| unknown [Populus trichocarpa]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/239 (79%), Positives = 207/239 (86%), Gaps = 4/239 (1%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGA-S 71
           DSRSVGA+AGLA+AIVFTWR  RS   PQRRQPKRQAP+TS+SV +TQ NA S P G   
Sbjct: 35  DSRSVGAVAGLAVAIVFTWRWLRSNSGPQRRQPKRQAPTTSSSVVTTQPNAVSIPSGGVC 94

Query: 72  SSSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQ--KQV 128
           SSSEDLR Q + D  FQ VKP+LGQ+VRQKLSEGRKVTCRLLGVILEES PEELQ   Q 
Sbjct: 95  SSSEDLRVQNVVDEFFQTVKPSLGQIVRQKLSEGRKVTCRLLGVILEESSPEELQGQSQA 154

Query: 129 TVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTE 188
           TV+SSVLE LLEITKFCD+YLMERVLD+ESE+KVL ALE AGVFTSGGLVKDKVLFCSTE
Sbjct: 155 TVRSSVLEVLLEITKFCDVYLMERVLDDESEQKVLAALENAGVFTSGGLVKDKVLFCSTE 214

Query: 189 IGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSLEQFFG 247
            GR+SFVRQLEPDWHIDTNPE++ QLARFIKYQL ISP RPER+AANV SSPSLEQFFG
Sbjct: 215 TGRSSFVRQLEPDWHIDTNPEVIFQLARFIKYQLQISPIRPERTAANVLSSPSLEQFFG 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550004|ref|XP_003543380.1| PREDICTED: peroxisome biogenesis protein 22-like [Glycine max]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/240 (76%), Positives = 209/240 (87%), Gaps = 3/240 (1%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSN-SVGS-TQANATSTPFGA 70
           D RS+GA+AGLA+AIVFTWR+ RSP   QRRQ KRQ PS+SN  VG+ + +NA+  P  A
Sbjct: 41  DLRSIGAVAGLAVAIVFTWRLLRSPSGSQRRQQKRQGPSSSNPGVGTNSNSNASVVPSDA 100

Query: 71  SSSSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVT 129
            S S+D R Q + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEES PEELQKQ T
Sbjct: 101 CSPSDDSRAQNVVDEFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEESSPEELQKQAT 160

Query: 130 VKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEI 189
           V+SSVLE LLE+TKFCDLYLMERVLD+ESEK+VL+ALE AGVFTSGGLVKDKVLFCSTE 
Sbjct: 161 VRSSVLEVLLEVTKFCDLYLMERVLDDESEKRVLVALEEAGVFTSGGLVKDKVLFCSTEN 220

Query: 190 GRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSLEQFFGCV 249
           GR+SFVRQLEPDWHID+NPEIV+QLARFIKYQLH+SP + ER+AANVFS+PSLEQFFG +
Sbjct: 221 GRSSFVRQLEPDWHIDSNPEIVTQLARFIKYQLHVSPYKTERTAANVFSAPSLEQFFGSI 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543742|ref|XP_003540319.1| PREDICTED: peroxisome biogenesis protein 22-like [Glycine max]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/238 (76%), Positives = 205/238 (86%), Gaps = 1/238 (0%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGASS 72
           D RS+GA+AGLA+AIVFTWR+ RSP   QRRQ KRQ PS+SN   +T +N +  P  A S
Sbjct: 41  DIRSIGAVAGLAVAIVFTWRLLRSPSGSQRRQQKRQGPSSSNPGVTTHSNVSDVPSDACS 100

Query: 73  SSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVK 131
            S+D R Q + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEES PEELQKQ TV+
Sbjct: 101 PSDDSRAQNVVDEFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEESSPEELQKQATVR 160

Query: 132 SSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGR 191
           SSVLE LLE+TKFCDLYLMERVLD+ESEK+VL+ALE AGVFTSG LVKDKVLFCSTE GR
Sbjct: 161 SSVLEVLLEVTKFCDLYLMERVLDDESEKRVLVALEEAGVFTSGRLVKDKVLFCSTENGR 220

Query: 192 TSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSLEQFFGCV 249
           +SFVRQLEPDWHID+NPEIV+QLARFIKYQLH+SP + ER+AANVFS+PSLEQFFG +
Sbjct: 221 SSFVRQLEPDWHIDSNPEIVTQLARFIKYQLHVSPYKTERTAANVFSAPSLEQFFGSI 278

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481087|gb|ABK92497.1| unknown [Populus trichocarpa]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/241 (78%), Positives = 208/241 (86%), Gaps = 4/241 (1%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGA-S 71
           DSRSVGA+AGLA+AIVFTWR+ RS   P+RRQPKRQA +TS+SV +TQ NA S P G   
Sbjct: 35  DSRSVGAVAGLAVAIVFTWRLLRSNSGPRRRQPKRQASTTSSSVVTTQPNAVSIPSGGVC 94

Query: 72  SSSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQ--KQV 128
           SSSEDLR Q + D  FQPVKPTL Q+VRQKLSEGRKVTCRL  VILEES PEELQ   Q 
Sbjct: 95  SSSEDLRVQNVVDEFFQPVKPTLAQIVRQKLSEGRKVTCRLFEVILEESSPEELQIVSQA 154

Query: 129 TVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTE 188
           TV+SSVLE LLEITKFCDLYLMERVLD+ESE+K+L ALE AGVFTSGGLVKDKVLFCSTE
Sbjct: 155 TVRSSVLEVLLEITKFCDLYLMERVLDDESEQKILAALENAGVFTSGGLVKDKVLFCSTE 214

Query: 189 IGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSLEQFFGC 248
            GR+SFVRQLEPDWHIDTNPEI+ QLARFIKYQLH+SP R ER+AANVFSSPSLEQFFGC
Sbjct: 215 TGRSSFVRQLEPDWHIDTNPEILFQLARFIKYQLHVSPTRIERTAANVFSSPSLEQFFGC 274

Query: 249 V 249
           +
Sbjct: 275 I 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468331|ref|XP_004151875.1| PREDICTED: peroxisome biogenesis protein 22-like [Cucumis sativus] gi|449484063|ref|XP_004156773.1| PREDICTED: peroxisome biogenesis protein 22-like [Cucumis sativus]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/240 (75%), Positives = 201/240 (83%), Gaps = 3/240 (1%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQ--APSTSNSVGSTQANATSTPFGA 70
           DSRSVGAIAG A+AI+FTWR+ RS    QR+QPKRQ  APS+S S      N  S P G 
Sbjct: 37  DSRSVGAIAGFAVAIIFTWRLLRSSNGHQRQQPKRQMPAPSSSASNAGLNTNEQSIPSGV 96

Query: 71  SSSSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVT 129
            S SEDLR   + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLG+ILEE  PE+LQKQ T
Sbjct: 97  CSPSEDLRAHNVVDEFFQPVKPTLGQIVRQKLSEGRKVTCRLLGIILEEYSPEDLQKQAT 156

Query: 130 VKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEI 189
           V+SSVLE LLEITK+CDLYLME VLD+ESEKKVL ALE AGVFTSGGLVKDKVLFCSTE 
Sbjct: 157 VRSSVLEVLLEITKYCDLYLMETVLDDESEKKVLSALEDAGVFTSGGLVKDKVLFCSTEN 216

Query: 190 GRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSLEQFFGCV 249
           GRTSFVRQLEPDWHID+NPEI++QLARFIKYQLH++P R ERSA+N+FSSPSLEQFFG +
Sbjct: 217 GRTSFVRQLEPDWHIDSNPEIITQLARFIKYQLHVAPIRHERSASNIFSSPSLEQFFGNI 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074268|gb|ACJ85494.1| unknown [Medicago truncatula]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 176/237 (74%), Positives = 202/237 (85%), Gaps = 1/237 (0%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGASS 72
           D R++GA+AGLA+AIVFTWR+ RSP   Q RQ KRQ  ++SN   ST +NA+  P  AS 
Sbjct: 38  DIRTIGAVAGLAVAIVFTWRLLRSPNPTQGRQRKRQGGASSNPGASTNSNASVVPSDASL 97

Query: 73  SSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVK 131
            S++LR Q + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEES PEELQ + TV+
Sbjct: 98  PSDELRAQNVVDEFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEESSPEELQTKATVR 157

Query: 132 SSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGR 191
           SSVLE LLEITKFCDLYLM+RVLD+ESEK+VL+ALE AGVFTSGGLVKDKVLF STE GR
Sbjct: 158 SSVLEVLLEITKFCDLYLMDRVLDDESEKRVLVALEEAGVFTSGGLVKDKVLFSSTENGR 217

Query: 192 TSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSLEQFFGC 248
           +SFVRQLEPDWHIDTNPEIV+QLARFIKY+LHI+P + ER+AANVFS+PSLE FFG 
Sbjct: 218 SSFVRQLEPDWHIDTNPEIVTQLARFIKYELHIAPYKTERTAANVFSAPSLELFFGT 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2093029	283	PEX22 "peroxin 22" [Arabidopsi	0.951	0.837	0.728	1.3e-86
GENEDB_PFALCIPARUM|PF11_0487	217	PF11_0487 "hypothetical protei	0.590	0.677	0.216	9.3e-08
UNIPROTKB|Q8IHP2	217	PF11_0487 "Conserved Plasmodiu	0.590	0.677	0.216	9.3e-08

TAIR|locus:2093029 PEX22 "peroxin 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 177/243 (72%), Positives = 203/243 (83%)

Query:    13 DSRSVGAIAGLALAIVFTWRMFRSPGAP-QRRQPKRQ---APSTSNSVGSTQAN-ATSTP 67
             DSRS+GAIAGLA+A++FTWR  R+PG   QRRQPKR+   A ++S +  ++Q+N A+S  
Sbjct:    41 DSRSIGAIAGLAIAVIFTWRAIRTPGEQRQRRQPKRRIHNAETSSAAAAASQSNLASSVA 100

Query:    68 FGASSSSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQK 126
                SS  ED   Q + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEE+ PEELQK
Sbjct:   101 PEVSSPREDNAVQDVVDQFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEETSPEELQK 160

Query:   127 QVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCS 186
             Q TV+SSVLE LLEITK+ DLYLMERVLD+ESE KVL ALE AGVFTSGGLVKDKVLFCS
Sbjct:   161 QATVRSSVLEVLLEITKYSDLYLMERVLDDESEAKVLQALENAGVFTSGGLVKDKVLFCS 220

Query:   187 TEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSLEQFF 246
             TEIGRTSFVRQLEPDWHIDTNPEI +QLARFIKYQLH++  +PER+A NVF+S S+EQFF
Sbjct:   221 TEIGRTSFVRQLEPDWHIDTNPEISTQLARFIKYQLHVATVKPERTAPNVFTSQSIEQFF 280

Query:   247 GCV 249
             G V
Sbjct:   281 GSV 283

GO:0005739 "mitochondrion" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0007031 "peroxisome organization" evidence=IMP

GENEDB_PFALCIPARUM|PF11_0487 PF11_0487 "hypothetical protein" [Plasmodium falciparum (taxid:5833)]

 Score = 138 (53.6 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 32/148 (21%), Positives = 75/148 (50%)

Query:    92 TLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLME 151
             T  +  R+K+++    +  ++ + L +   + +     +  + +E L +++   +L+++ 
Sbjct:    53 TSNESYRRKMNKKNISSKPVISLCLNDIVIKIIGNNAHIMENSVEPLNKLSSISELFVIA 112

Query:   152 RVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIV 211
             ++ ++  EK ++   +  G+F  G L + +++FC+T  GR S +RQL P  H+D +  ++
Sbjct:   113 QISNDVQEKNIIDLFKKLGLFDKG-LKEHRLMFCNTSNGRASMIRQLSPLTHVDNDETVI 171

Query:   212 SQLARFIKYQLHISPNRPERSAANVFSS 239
               L   I   + I  N      +N F+S
Sbjct:   172 KTLTGKIPNLVQIYENINTSDHSNFFTS 199

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IHP2 PF11_0487 "Conserved Plasmodium protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 138 (53.6 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 32/148 (21%), Positives = 75/148 (50%)

Query:    92 TLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLME 151
             T  +  R+K+++    +  ++ + L +   + +     +  + +E L +++   +L+++ 
Sbjct:    53 TSNESYRRKMNKKNISSKPVISLCLNDIVIKIIGNNAHIMENSVEPLNKLSSISELFVIA 112

Query:   152 RVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIV 211
             ++ ++  EK ++   +  G+F  G L + +++FC+T  GR S +RQL P  H+D +  ++
Sbjct:   113 QISNDVQEKNIIDLFKKLGLFDKG-LKEHRLMFCNTSNGRASMIRQLSPLTHVDNDETVI 171

Query:   212 SQLARFIKYQLHISPNRPERSAANVFSS 239
               L   I   + I  N      +N F+S
Sbjct:   172 KTLTGKIPNLVQIYENINTSDHSNFFTS 199


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      249       249   0.00080  114 3  11 22  0.43    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  178 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.79u 0.13s 26.92t   Elapsed:  00:00:01
  Total cpu time:  26.79u 0.13s 26.92t   Elapsed:  00:00:01
  Start:  Tue May 21 00:19:57 2013   End:  Tue May 21 00:19:58 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LSX7	PEX22_ARATH	No assigned EC number	0.6748	0.9518	0.8374	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
PF12827	117	Peroxin-22: Peroxisomal biogenesis protein family;	94.74
COG4502	180	5'(3')-deoxyribonucleotidase [Nucleotide transport	84.41
cd08556	189	GDPD Glycerophosphodiester phosphodiesterase domai	81.85

>PF12827 Peroxin-22: Peroxisomal biogenesis protein family; InterPro: IPR024359 Peroxin-22 is an integral peroxisomal membrane protein

Probab=94.74  E-value=0.0053  Score=50.69  Aligned_cols=46  Identities=30%  Similarity=0.494  Sum_probs=33.2

Q ss_pred             cceEEeeccccCcchheeecccceeecCCHH----HHHHHHhhccceeee
Q 025704          179 KDKVLFCSTEIGRTSFVRQLEPDWHIDTNPE----IVSQLARFIKYQLHI  224 (249)
Q Consensus       179 rhKVLFCST~~Gr~sfVRQLeP~lHIDtd~~----vv~~L~rfVp~lv~I  224 (249)
                      .|||+-|+|.+|+-|-+|||.|+.-+=...+    +=..|.||+.+++.|
T Consensus        68 ~~KiI~Cdt~~G~~~~vK~Lk~d~llv~~ddl~~~ip~Di~rfv~~Ii~i  117 (117)
T PF12827_consen   68 NYKIIKCDTMQGYWSCVKHLKPDQLLVCSDDLGISIPEDINRFVKNIINI  117 (117)
T ss_dssp             GGGEEEESSHHHHHHHHHHH--SEEEE-GGGT-SSS-GGGGGT-SEEEE-
T ss_pred             ceeEEEecchhhHHHHHHhcCCCceEEehhhccccCHHHHHHHHHhhccC
Confidence            6999999999999999999999988742211    334699999998765

The N terminus of peroxin-22 is located in the matrix, while the C terminus is located in the cytosol. Peroxin-22 interacts with the ubiquitin-conjugating enzyme Pex4p, anchoring it at the peroxisomal membrane. Both proteins may act at the same step in peroxisome biogenesis [].; PDB: 2Y9O_B 2Y9M_B 2Y9P_B.

>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]

Probab=84.41  E-value=3.4  Score=36.54  Aligned_cols=76  Identities=24%  Similarity=0.393  Sum_probs=57.7

Q ss_pred             ccceeehhHHHHHHHHhhcCceEEEEEeeC--hhhHHHHHHHHHHcCCcCCCCcccceEEeeccccCcchheeeccccee
Q 025704          126 KQVTVKSSVLEALLEITKFCDLYLMERVLD--NESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWH  203 (249)
Q Consensus       126 ~~a~v~esa~e~LleLak~~DvYLm~~V~d--D~eE~~Vl~lLe~~GlF~~gGL~rhKVLFCST~~Gr~sfVRQLeP~lH  203 (249)
                      -+..++|-+-+++-||++.+|||+.+.-.|  +.=|++--.++|..     .-|...+++||    |+-.+|   +.++-
T Consensus        65 RnL~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~F-----PFi~~qn~vfC----gnKniv---kaDil  132 (180)
T COG4502          65 RNLGVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEKF-----PFISYQNIVFC----GNKNIV---KADIL  132 (180)
T ss_pred             hhcCccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHHC-----CCCChhhEEEe----cCCCeE---EeeEE
Confidence            367889999999999999999999876633  44456677777774     36677999999    444444   57899


Q ss_pred             ecCCHHHHHH
Q 025704          204 IDTNPEIVSQ  213 (249)
Q Consensus       204 IDtd~~vv~~  213 (249)
                      ||.++-.++-
T Consensus       133 IDDnp~nLE~  142 (180)
T COG4502         133 IDDNPLNLEN  142 (180)
T ss_pred             ecCCchhhhh
Confidence            9999865443

>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins

Probab=81.85  E-value=2.7  Score=34.02  Aligned_cols=64  Identities=22%  Similarity=0.267  Sum_probs=46.1

Q ss_pred             hhHHHHHHHHhhcCceEEEEEeeChh----hHHHHHHHHHHcCCcCCCCcccceEEeeccccCcchheeecccceee
Q 025704          132 SSVLEALLEITKFCDLYLMERVLDNE----SEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHI  204 (249)
Q Consensus       132 esa~e~LleLak~~DvYLm~~V~dD~----eE~~Vl~lLe~~GlF~~gGL~rhKVLFCST~~Gr~sfVRQLeP~lHI  204 (249)
                      +.--|+| ++.+. +++++.-++++.    -.+.+++++++.|       ..++|+|||........+|++.|.+.+
T Consensus        49 ~tL~e~l-~~~~~-~~~i~leiK~~~~~~~~~~~l~~~i~~~~-------~~~~v~i~s~~~~~l~~~~~~~p~~~~  116 (189)
T cd08556          49 PTLEEVL-ELVKG-GVGLNIELKEPTRYPGLEAKVAELLREYG-------LEERVVVSSFDHEALRALKELDPEVPT  116 (189)
T ss_pred             CCHHHHH-Hhccc-CcEEEEEECCCCCchhHHHHHHHHHHHcC-------CcCCEEEEeCCHHHHHHHHHhCCCCcE
Confidence            3334444 33333 899999999973    5678999999865       237999999887777777777776654

The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	249
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 6e-07
 Identities = 44/269 (16%), Positives = 81/269 (30%), Gaps = 69/269 (25%)

Query: 5   LTLLSWY-----QD-SRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGS 58
            +LL  Y     QD  R V       L+I+      R               +T ++   
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSII--AESIR------------DGLATWDNWKH 349

Query: 59  TQANATSTPFGASS---SSEDLRTQIAD-ALFQPVKPTLGQVVRQKLSEGRKVTCRLLGV 114
              +  +T   +S       + R      ++F                    +   LL +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP---------------PSAHIPTILLSL 394

Query: 115 I---LEESCPEELQKQVTVKSSVLEALLEITKFC-DLYLMERV-LDNESE--KKVLLALE 167
           I   + +S    +  ++   S V +   E T     +YL  +V L+NE    + ++    
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 168 TAGVFTSGGLVKDKV-----------LFCSTEIGRTSFVRQLEPD--W------HIDTNP 208
               F S  L+   +           L       R +  R +  D  +      H  T  
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514

Query: 209 E----IVSQLARFIKYQLHISPNRPERSA 233
                I++ L +   Y+ +I  N P+   
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYER 543

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 48/280 (17%), Positives = 79/280 (28%), Gaps = 74/280 (26%)

Query: 1   MFWVLTLLSWYQDSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQ 60
           +FW L      +    V       L I + + M  SP   ++RQP               
Sbjct: 67  LFWTLLS----KQEEMVQKFVEEVLRINYKFLM--SPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 61  ANATSTPFGASS-SSEDLRTQIADALFQ--PV------------KPTL-GQVVRQKLSEG 104
            +  +  F   + S      ++  AL +  P             K  +   V        
Sbjct: 121 ND--NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY---- 174

Query: 105 RKVTCRLLGVIL---------EESCPEELQK---QVTVKSSV------------------ 134
            KV C++   I           E+  E LQK   Q+    +                   
Sbjct: 175 -KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 135 LEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLV--KDKVLFCSTEIGRT 192
           L  LL+   + +  L   VL N    K   A       +   L+  + K +        T
Sbjct: 234 LRRLLKSKPYENCLL---VLLNVQNAKAWNAFN----LSCKILLTTRFKQVTDFLSAATT 286

Query: 193 SFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNR-PER 231
           + +        + T  E+ S L ++    L   P   P  
Sbjct: 287 THISLDHHSMTL-TPDEVKSLLLKY----LDCRPQDLPRE 321

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
2y9m_B	130	Peroxisome assembly protein 22; ligase-transport p	93.11
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	81.53
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	80.45

>2y9m_B Peroxisome assembly protein 22; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9o_B 2y9p_B

Probab=93.11  E-value=0.011  Score=48.97  Aligned_cols=48  Identities=23%  Similarity=0.377  Sum_probs=39.4

Q ss_pred             ccceEEeeccccCcchheeecccceeecCCH-----------HHHHHHHhhccceeeec
Q 025704          178 VKDKVLFCSTEIGRTSFVRQLEPDWHIDTNP-----------EIVSQLARFIKYQLHIS  225 (249)
Q Consensus       178 ~rhKVLFCST~~Gr~sfVRQLeP~lHIDtd~-----------~vv~~L~rfVp~lv~I~  225 (249)
                      +.||||.|+|.+|+-+.+|+|+|+..+=-..           .+-..|.|||..++-+.
T Consensus        61 ~nyKIi~Csn~qG~ws~vK~Lkk~~LL~cSdDl~~~~g~~~~~vP~Dl~rfVk~Ivn~D  119 (130)
T 2y9m_B           61 NEHKIIYCDSMDGLWSCVRRLGKFQCILNSRDFTSSGGSDAAVVPEDIGRFVKFVVDSD  119 (130)
T ss_dssp             CGGGEEEESCHHHHHHHHHHHCCSEEEECGGGTC-------CCSCTTGGGTCSEEEECC
T ss_pred             CcceEEEeccHHHHHHHHHhcCCceEEEechhhccccCcCcccCchHHHHHHHHHcccC
Confidence            4699999999999999999999999982221           34567899999988765

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=81.53  E-value=1.5  Score=29.92  Aligned_cols=21  Identities=14%  Similarity=0.064  Sum_probs=15.8

Q ss_pred             hhhHHHHHHHHHHHHHHhhcC
Q 025704           16 SVGAIAGLALAIVFTWRMFRS   36 (249)
Q Consensus        16 s~~~~ag~a~a~v~~w~~lr~   36 (249)
                      =+|+++++++.....|.++|.
T Consensus        16 VVgGv~~v~ii~~~~~~~~RR   36 (44)
T 2l2t_A           16 VIGGLFILVIVGLTFAVYVRR   36 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             ehHHHHHHHHHHHHHHHHhhh
Confidence            367778888777777888885

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=80.45  E-value=1.7  Score=29.56  Aligned_cols=21  Identities=24%  Similarity=0.154  Sum_probs=15.9

Q ss_pred             hhhHHHHHHHHHHHHHHhhcC
Q 025704           16 SVGAIAGLALAIVFTWRMFRS   36 (249)
Q Consensus        16 s~~~~ag~a~a~v~~w~~lr~   36 (249)
                      =+|+++++++.+...|.++|-
T Consensus        17 VVgGv~~~~ii~~~~~~~~RR   37 (44)
T 2ks1_B           17 MVGALLLLLVVALGIGLFMRR   37 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHhhh
Confidence            467788888877777888884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00