Citrus Sinensis ID: 025708

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSASLQSSFSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLDQ
Secondary Structure (PSIPRED)
ccccccccHHHcHHccccccccccccccccHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccccccccccccEEEEEEccEEEEEEccccccccEEccEEEEEEccccccEEEEEEEccccccccccEEEEEEccccHHHHHHcccccccccEEEcEEEEccccccccccEEEEEccEEEEEEEEEEccccccEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccHHcccEEEEcccccccccccccHHHHHHHccccccHHHHccccHccccccccHccccccccccccccccccccccHHccccHccEEEEEEEEEcccccHHcccccccEEEEEEcccEEEEEEEEcccccccccEEEEEcccccccEEEEEEEcccccccccccEEEEEcccHHHHHHHccccccccccEEEEEEcccccccccccEEEEEccEEEEEEEEEEccccccEEEEEEEEEEccc
Coil and Loop (DISEMBL)
mievggnssanAIYEafipegvskpgpdssheIRSKFIRSKYELQeflkpslriasgkpsaslqssFSRKIIDSfrstnssqkkdvgMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKsnlnpvwneelmlsvpqeygpvklevfdhdtfsaddimgeaeiDIQPLLtsalafgdpemfgnmqigkwlksddnalledstiniidGKVKQKISLKLQnvesgelelelewmpldq
Flexible Loop (DISEMBL)
mievggnssaNAIYEAFipegvskpgpdsSHEIRSKFIRSKYELQEFLKPslriasgkpsaslqssfsrKIIDSfrstnssqkkdvgmVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTiniidgkvkQKISLKlqnvesgelelelewmpldq
Low Complexity Region (SEG)
MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSASLQSSFSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLDQ
Disordered region (IsUnstruct)
*************Y***********************************************************************VGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNV****************
Disordered Region (DISOPRED)
******NSSANAI*****************************************************************************FIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPL**
Disordered Region (DISEMBL)
********SANAIYEAFIPEGV********HEIRSKFIRSKYELQEFLKPSLRIA***********FSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLDQ
Disordered Region (DISPRO)
*****GNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS*R*******************************DVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLDQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSASLQSSFSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLDQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
Q9FVJ3	337	ADP-ribosylation factor G	yes	no	1.0	0.738	0.760	1e-110
Q8LFN9	336	Probable ADP-ribosylation	no	no	1.0	0.741	0.744	1e-109
Q8L7A4	385	Probable ADP-ribosylation	no	no	1.0	0.646	0.479	1e-64
P46935	887	E3 ubiquitin-protein liga	yes	no	0.578	0.162	0.307	3e-12
Q62940	887	E3 ubiquitin-protein liga	yes	no	0.578	0.162	0.319	3e-12
Q28BX9	1014	C2 domain-containing prot	no	no	0.377	0.092	0.4	2e-11
Q5RDC8	1000	C2 domain-containing prot	yes	no	0.377	0.094	0.41	2e-11
Q86YS7	1000	C2 domain-containing prot	no	no	0.377	0.094	0.41	2e-11
Q7TPS5	1016	C2 domain-containing prot	no	no	0.377	0.092	0.41	2e-11
Q6DN14	999	Multiple C2 and transmemb	no	no	0.485	0.121	0.335	1e-10

>sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1

 Score =  399 bits (1024), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/255 (76%), Positives = 223/255 (87%), Gaps = 6/255 (2%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI-----A 55
           MIE+GGN+SAN+IYEAFIPEG SKPGPD+SH+ R +FIRSKYE QEFLKPSLRI     +
Sbjct: 83  MIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQEFLKPSLRITSVRGS 142

Query: 56  SGKPSASLQSSFSRKIIDSFRSTNSSQKKDV-GMVEFIGLLKVKVVKGINLAIRDMMSSD 114
           S K  A L SS S+KI+DSFR+ +SSQ+  + GMVEFIGLLKV + KG N+AIRDMMSSD
Sbjct: 143 STKTPAFLSSSLSKKIVDSFRTNSSSQQPQLEGMVEFIGLLKVTIKKGTNMAIRDMMSSD 202

Query: 115 PYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAE 174
           PYVVL LGQQ  Q+T+VKSNLNPVWNEELMLSVP  YG VKL+VFD+DTFSADDIMGEAE
Sbjct: 203 PYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAE 262

Query: 175 IDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVE 234
           IDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DNAL+EDS INI DGKVKQ++ +KLQNVE
Sbjct: 263 IDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIADGKVKQEVQIKLQNVE 322

Query: 235 SGELELELEWMPLDQ 249
           SGELELE+EW+PL+Q
Sbjct: 323 SGELELEMEWLPLEQ 337

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Binds phosphatidylinositol 3-monophosohate (PI-3-P) and anionic phospholipids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFN9|AGD13_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1

 Score =  394 bits (1013), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/254 (74%), Positives = 223/254 (87%), Gaps = 5/254 (1%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGK-- 58
           MIE+GGN+SAN+IYEAF+P+  SKPGPD +H+ R +FIR+KYELQEFLKPSLRI SGK  
Sbjct: 83  MIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQRMRFIRAKYELQEFLKPSLRITSGKGS 142

Query: 59  --PSASLQSSFSRKIIDSFRSTNSSQKK-DVGMVEFIGLLKVKVVKGINLAIRDMMSSDP 115
              SA L SS SRKI+DSFR+ +SSQ     GMVEFIGLLKV + KG NLAIRDMMSSDP
Sbjct: 143 TKSSAFLTSSLSRKIMDSFRTNSSSQTMFQEGMVEFIGLLKVTIKKGTNLAIRDMMSSDP 202

Query: 116 YVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEI 175
           YVVL LG+Q +QTT++ SNLNPVWN+ELMLSVP+ YGPVKL+V+D+DTFSADDIMGEA+I
Sbjct: 203 YVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPVKLQVYDYDTFSADDIMGEADI 262

Query: 176 DIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVES 235
           DIQPL+TSA+AFGDPEMFG+MQIGKWLKS DN L++DS INI+DGKVKQ++ +KLQNVES
Sbjct: 263 DIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNPLIDDSIINIVDGKVKQEVQIKLQNVES 322

Query: 236 GELELELEWMPLDQ 249
           GELELE+EW+PLDQ
Sbjct: 323 GELELEMEWLPLDQ 336

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L7A4|AGD11_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1

 Score =  246 bits (628), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 130/271 (47%), Positives = 177/271 (65%), Gaps = 22/271 (8%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS--------- 51
           ++  GGN++ N  +EA   +   KP PDS++E R+ FIR KYE  +F+ P          
Sbjct: 115 LVGYGGNTAVNERFEACNIDQSKKPKPDSTNEERNDFIRKKYEQHQFMDPKDGALCTYQQ 174

Query: 52  -LRIASGKPSASLQSSFSRK--IIDSFRSTNSSQKKD----------VGMVEFIGLLKVK 98
             R  +  PS    S  S K  I  +FR++   ++ D           GMVEF+GL+KV 
Sbjct: 175 PSRTNTSPPSLCSASHRSTKNRIGHAFRNSWGRRESDHKGPKKSNSMAGMVEFVGLIKVN 234

Query: 99  VVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEV 158
           VVKG NLA+RD+M+SDPYV+L LGQQ+V+T ++K+NLNPVWNE LMLS+P+   P+K+ V
Sbjct: 235 VVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMPPLKVLV 294

Query: 159 FDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINII 218
           +D DTFS DD MGEAEIDIQPL+++A A+    +   MQ+G W+ S +N L+ D  I + 
Sbjct: 295 YDKDTFSTDDFMGEAEIDIQPLVSAAKAYETSSIKEPMQLGSWVASKENTLVSDGIILLE 354

Query: 219 DGKVKQKISLKLQNVESGELELELEWMPLDQ 249
           DGKVKQ ISL+LQNVE G LE++LE +PL Q
Sbjct: 355 DGKVKQDISLRLQNVERGVLEIQLECLPLTQ 385

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).

Arabidopsis thaliana (taxid: 3702)

>sp|P46935|NEDD4_MOUSE E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus GN=Nedd4 PE=1 SV=3

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 25/169 (14%)

Query: 94  LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLS 146
           +++VKV+ GI LA +D++ +SDPYV + L         +VQT  +K +LNP WNEE++  
Sbjct: 79  VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 138

Query: 147 VPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206
           V  +   +  EVFD +  + DD +G+ ++ + PL T       P  F            D
Sbjct: 139 VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTF-----------KD 187

Query: 207 NALLEDSTINIIDGKVKQKISL------KLQNVESGELELELEWMPLDQ 249
             L   S  + + G ++ K++       + +N +  E ELE  W+ LDQ
Sbjct: 188 FVLHPRSHKSRVKGYLRLKMTYLPKNGSEDENADQAE-ELEPGWVVLDQ 235

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Monoubiquitinates IGF1R at multiple sites, thus leading to receptor internalization and degradation in lysosomes. Ubiquitinates FGFR1, leading to receptor internalization and degradation in lysosomes. Involved in ubiquitination of ERBB4 intracellular domain E4ICD1 (PubMed:19193720). Predominantly involved in ubiquitination of membrane bound forms of ERBB4 rather than processed precursors and intermediate membrane-anchored 80 kDa fragments (m80HER4), with a lesser role in ubiquitination of ERBB4 intracellular domain E4ICD1 (PubMed:19047365). Involved in the pathway leading to the degradation of VEGFR-2/KDFR, independently of its ubiquitin-ligase activity. Part of a signaling complex composed of NEDD4, RAP2A and TNIK which regulates neuronal dendrite extension and arborization during development. Ubiquitinates TNK2 and regulates EGF-induced degradation of EGFR and TNF2.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q62940|NEDD4_RAT E3 ubiquitin-protein ligase NEDD4 OS=Rattus norvegicus GN=Nedd4 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 25/169 (14%)

Query: 94  LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLS 146
           +++VKV+ GI LA +D++ +SDPYV + L         +VQT  +K +LNP WNEE++  
Sbjct: 76  VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGVLTSVQTKTIKKSLNPKWNEEILFR 135

Query: 147 V-PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD 205
           V PQ++  +  EVFD +  + DD +G+ ++ + PL T       P  F            
Sbjct: 136 VLPQQHR-ILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTF-----------K 183

Query: 206 DNALLEDSTINIIDGKVKQKISLKLQNVESGE-----LELELEWMPLDQ 249
           D  L   S  + + G ++ K++   +N    E      ELE  W+ LDQ
Sbjct: 184 DFVLHPRSHKSRVKGYLRLKMTYLPKNGSDDENADQAEELEPGWVVLDQ 232

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Monoubiquitinates IGF1R at multiple sites, thus leading to receptor internalization and degradation in lysosomes. Ubiquitinates FGFR1, leading to receptor internalization and degradation in lysosomes. Involved in the pathway leading to the degradation of VEGFR-2/KDFR, independently of its ubiquitin-ligase activity. Is involved in ubiquitination of ERBB4 intracellular domain E4ICD. Part of a signaling complex composed of NEDD4, RAP2A and TNIK which regulates neuronal dendrite extension and arborization during development. Ubiquitinates TNK2 and regulates EGF-induced degradation of EGFR and TNF2.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q28BX9|C2CD5_XENTR C2 domain-containing protein 5 OS=Xenopus tropicalis GN=c2cd5 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 6/100 (6%)

Query: 93  GLLKVKVVKGINLAIRDMMS--SDPYVVLRLGQQTVQTTIVKSNLNPVWNEE-LMLSVPQ 149
           G LKVK+V G +L + D  S  +D +V ++ G  T +T +   +LNP WN E     V  
Sbjct: 3   GKLKVKIVAGRHLPVMDRASDLTDAFVEVKFGNTTFKTDVYHKSLNPQWNSEWFKFEVDD 62

Query: 150 EY---GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALA 186
           E     P+++ V DHDT+SA+D +G+  IDI PLL +  A
Sbjct: 63  EDLQDEPLQITVLDHDTYSANDAIGKVYIDIDPLLYTEAA 102

Xenopus tropicalis (taxid: 8364)

>sp|Q5RDC8|C2CD5_PONAB C2 domain-containing protein 5 OS=Pongo abelii GN=C2CD5 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 6/100 (6%)

Query: 93  GLLKVKVVKGINLAIRDMMS--SDPYVVLRLGQQTVQTTIVKSNLNPVWNEE-LMLSVPQ 149
           G LKVK+V G +L + D  S  +D +V ++ G  T +T +   +LNP WN E     V  
Sbjct: 3   GKLKVKIVAGRHLPVMDRASDLTDAFVEVKFGNTTFKTDVYLKSLNPQWNSEWFKFEVDD 62

Query: 150 EY---GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALA 186
           E     P+++ V DHDT+SA+D +G+  IDI PLL S  A
Sbjct: 63  EDLQDEPLQITVLDHDTYSANDAIGKVYIDIDPLLYSEAA 102

Pongo abelii (taxid: 9601)

>sp|Q86YS7|C2CD5_HUMAN C2 domain-containing protein 5 OS=Homo sapiens GN=C2CD5 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 6/100 (6%)

Query: 93  GLLKVKVVKGINLAIRDMMS--SDPYVVLRLGQQTVQTTIVKSNLNPVWNEE-LMLSVPQ 149
           G LKVK+V G +L + D  S  +D +V ++ G  T +T +   +LNP WN E     V  
Sbjct: 3   GKLKVKIVAGRHLPVMDRASDLTDAFVEVKFGNTTFKTDVYLKSLNPQWNSEWFKFEVDD 62

Query: 150 EY---GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALA 186
           E     P+++ V DHDT+SA+D +G+  IDI PLL S  A
Sbjct: 63  EDLQDEPLQITVLDHDTYSANDAIGKVYIDIDPLLYSEAA 102

Homo sapiens (taxid: 9606)

>sp|Q7TPS5|C2CD5_MOUSE C2 domain-containing protein 5 OS=Mus musculus GN=C2cd5 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 6/100 (6%)

Query: 93  GLLKVKVVKGINLAIRDMMS--SDPYVVLRLGQQTVQTTIVKSNLNPVWNEE-LMLSVPQ 149
           G LKVK+V G +L + D  S  +D +V ++ G  T +T +   +LNP WN E     V  
Sbjct: 3   GKLKVKIVAGRHLPVMDRASDLTDAFVEVKFGNTTFKTDVYLKSLNPQWNSEWFKFEVDD 62

Query: 150 EY---GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALA 186
           E     P+++ V DHDT+SA+D +G+  IDI PLL S  A
Sbjct: 63  EDLQDEPLQITVLDHDTYSANDAIGKVYIDIDPLLYSEAA 102

Mus musculus (taxid: 10090)

>sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 7/128 (5%)

Query: 56  SGKPSASLQSSFSRKIIDSFRSTNSSQK-KDVGMVEFIGLLKVKVVKGINLAIRDMM-SS 113
           S  P    +   S+KII++  ++N+     D GM +    L + + +G +LA RD   +S
Sbjct: 227 SRAPETGEEHGSSQKIINTAGTSNAEVPLADPGMYQ----LDITLRRGQSLAARDRGGTS 282

Query: 114 DPYVVLRLG-QQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE 172
           DPYV  ++G ++  ++ I+  NLNPVW E+  + V     P+ ++VFD+D    DD MG 
Sbjct: 283 DPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACILVDHLREPLYIKVFDYDFGLQDDFMGS 342

Query: 173 AEIDIQPL 180
           A +D+  L
Sbjct: 343 AFLDLTQL 350

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
255564387	330	ARF GTPase activator, putative [Ricinus	1.0	0.754	0.807	1e-117
297804038	332	zac [Arabidopsis lyrata subsp. lyrata] g	1.0	0.75	0.764	1e-110
110738686	337	hypothetical protein [Arabidopsis thalia	1.0	0.738	0.764	1e-109
297813911	336	ARF-GAP domain 13 [Arabidopsis lyrata su	1.0	0.741	0.759	1e-109
2911073	369	putative protein [Arabidopsis thaliana]	1.0	0.674	0.760	1e-109
21594052	337	putative GTPase activating protein [Arab	1.0	0.738	0.760	1e-109
18415638	337	ADP-ribosylation factor GTPase-activatin	1.0	0.738	0.760	1e-109
311701729	332	ARF-GAP protein [Phytolacca acinosa]	1.0	0.75	0.768	1e-109
7267293	334	putative protein [Arabidopsis thaliana]	0.995	0.742	0.747	1e-108
18412932	336	putative ADP-ribosylation factor GTPase-	1.0	0.741	0.744	1e-107

>gi|255564387|ref|XP_002523190.1| ARF GTPase activator, putative [Ricinus communis] gi|223537597|gb|EEF39221.1| ARF GTPase activator, putative [Ricinus communis]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/249 (80%), Positives = 230/249 (92%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPS 60
           MIEVGGNS+ANAIYEAFIPEGVSKP PD+SH+ R +FIRSKYELQEFLKPSLRI SGK +
Sbjct: 82  MIEVGGNSTANAIYEAFIPEGVSKPHPDASHDERMRFIRSKYELQEFLKPSLRITSGKST 141

Query: 61  ASLQSSFSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLR 120
            S+QSSFSR+ +DSFR  ++SQ  + GMVEFIGLLKVKV  G NLAIRDMMSSDPYVVL 
Sbjct: 142 MSVQSSFSRRFLDSFRIASTSQTSEEGMVEFIGLLKVKVKNGTNLAIRDMMSSDPYVVLT 201

Query: 121 LGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPL 180
           LG+QTVQTT+V+SNLNPVWNEELMLSVPQ +GPVKL+VFDHDTFSADDIMGEAEID+QPL
Sbjct: 202 LGKQTVQTTVVRSNLNPVWNEELMLSVPQNFGPVKLQVFDHDTFSADDIMGEAEIDVQPL 261

Query: 181 LTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELEL 240
           +TSA+AFG P+MFGNMQIGKWLKS+DNAL+EDS INI+DGKVKQ+ISLKLQNVESGEL+L
Sbjct: 262 ITSAMAFGRPDMFGNMQIGKWLKSNDNALMEDSIINIVDGKVKQEISLKLQNVESGELQL 321

Query: 241 ELEWMPLDQ 249
           E++W+PL+Q
Sbjct: 322 EMQWIPLEQ 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804038|ref|XP_002869903.1| zac [Arabidopsis lyrata subsp. lyrata] gi|297315739|gb|EFH46162.1| zac [Arabidopsis lyrata subsp. lyrata]

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/255 (76%), Positives = 224/255 (87%), Gaps = 6/255 (2%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPS 60
           MIE+GGN+SAN+IYEAFIPEG SKPGPD+SH+ R +FIRSKYE QEFLKPSLRI S + S
Sbjct: 78  MIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQEFLKPSLRITSVRGS 137

Query: 61  AS-----LQSSFSRKIIDSFRSTNSSQKKDV-GMVEFIGLLKVKVVKGINLAIRDMMSSD 114
           ++     L SS S+KIIDSFR+ +SSQ+  + GMVEFIGLLKV + KG NLA+RDMMSSD
Sbjct: 138 STKSTPYLSSSISKKIIDSFRTNSSSQQPQLEGMVEFIGLLKVTIKKGTNLAVRDMMSSD 197

Query: 115 PYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAE 174
           PYVVL LGQQ  Q+T+VKSNLNPVWNEELMLSVP  YG VKL+VFD+DTFSADDIMGEAE
Sbjct: 198 PYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAE 257

Query: 175 IDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVE 234
           IDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DNAL+EDS INI DGKVKQ++ +KLQNVE
Sbjct: 258 IDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIADGKVKQEVQIKLQNVE 317

Query: 235 SGELELELEWMPLDQ 249
           SGELELE+EW+PLDQ
Sbjct: 318 SGELELEMEWLPLDQ 332

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110738686|dbj|BAF01268.1| hypothetical protein [Arabidopsis thaliana]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/255 (76%), Positives = 224/255 (87%), Gaps = 6/255 (2%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI-----A 55
           MIE+GGN+SAN+IYEAFIPEG SKPGPD+SH+ R +FIRSKYE QEFLKPSLRI     +
Sbjct: 83  MIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQEFLKPSLRITSVRGS 142

Query: 56  SGKPSASLQSSFSRKIIDSFRSTNSSQKKDV-GMVEFIGLLKVKVVKGINLAIRDMMSSD 114
           S K  A L SS S+KI+DSFR+ +SSQ+  + GMVEFIGLLKV + KG N+AIRDMMSSD
Sbjct: 143 STKTPAFLSSSLSKKIVDSFRTNSSSQQPQLEGMVEFIGLLKVTIKKGTNMAIRDMMSSD 202

Query: 115 PYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAE 174
           PYVVL LGQQ VQ+T+VKSNLNPVWNEELMLSVP  YG VKL+VFD+DTFSADDIMGEAE
Sbjct: 203 PYVVLTLGQQKVQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAE 262

Query: 175 IDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVE 234
           IDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DNAL+EDS INI DGKVKQ++ +KLQNVE
Sbjct: 263 IDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIADGKVKQEVQIKLQNVE 322

Query: 235 SGELELELEWMPLDQ 249
           SGELELE+EW+PL+Q
Sbjct: 323 SGELELEMEWLPLEQ 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813911|ref|XP_002874839.1| ARF-GAP domain 13 [Arabidopsis lyrata subsp. lyrata] gi|297320676|gb|EFH51098.1| ARF-GAP domain 13 [Arabidopsis lyrata subsp. lyrata]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/254 (75%), Positives = 224/254 (88%), Gaps = 5/254 (1%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGK-- 58
           MIE+GGN+SAN+IYEAF+P+  SKPGPD SH+ R +FIR+KYELQEFLKPSLRI SGK  
Sbjct: 83  MIEIGGNASANSIYEAFVPDTCSKPGPDVSHDQRMRFIRAKYELQEFLKPSLRITSGKCS 142

Query: 59  --PSASLQSSFSRKIIDSFRSTNSSQKK-DVGMVEFIGLLKVKVVKGINLAIRDMMSSDP 115
              SA L SS SRKI+DSFR+ +SSQK    GMVEFIGLLKV + KG NLAIRDMMSSDP
Sbjct: 143 TKSSAFLTSSLSRKIMDSFRTNSSSQKIFQEGMVEFIGLLKVTIKKGTNLAIRDMMSSDP 202

Query: 116 YVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEI 175
           YVVL LG+Q +QTT+V SNLNPVWN+ELMLSVP+ YGPVKL+V+D+DTFSADDIMGEAEI
Sbjct: 203 YVVLNLGKQKLQTTVVNSNLNPVWNQELMLSVPESYGPVKLQVYDYDTFSADDIMGEAEI 262

Query: 176 DIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVES 235
           DIQPL+TSA+AFGDPEMFG+MQIGKWLKS DN L++DS INI+DGKVKQ++ +KLQNVES
Sbjct: 263 DIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNPLIDDSIINIVDGKVKQEVQIKLQNVES 322

Query: 236 GELELELEWMPLDQ 249
           GELELE+EW+PLDQ
Sbjct: 323 GELELEMEWLPLDQ 336

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2911073|emb|CAA17535.1| putative protein [Arabidopsis thaliana] gi|7268913|emb|CAB79116.1| putative protein [Arabidopsis thaliana]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/255 (76%), Positives = 223/255 (87%), Gaps = 6/255 (2%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI-----A 55
           MIE+GGN+SAN+IYEAFIPEG SKPGPD+SH+ R +FIRSKYE QEFLKPSLRI     +
Sbjct: 115 MIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQEFLKPSLRITSVRGS 174

Query: 56  SGKPSASLQSSFSRKIIDSFRSTNSSQKKDV-GMVEFIGLLKVKVVKGINLAIRDMMSSD 114
           S K  A L SS S+KI+DSFR+ +SSQ+  + GMVEFIGLLKV + KG N+AIRDMMSSD
Sbjct: 175 STKTPAFLSSSLSKKIVDSFRTNSSSQQPQLEGMVEFIGLLKVTIKKGTNMAIRDMMSSD 234

Query: 115 PYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAE 174
           PYVVL LGQQ  Q+T+VKSNLNPVWNEELMLSVP  YG VKL+VFD+DTFSADDIMGEAE
Sbjct: 235 PYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAE 294

Query: 175 IDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVE 234
           IDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DNAL+EDS INI DGKVKQ++ +KLQNVE
Sbjct: 295 IDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIADGKVKQEVQIKLQNVE 354

Query: 235 SGELELELEWMPLDQ 249
           SGELELE+EW+PL+Q
Sbjct: 355 SGELELEMEWLPLEQ 369

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21594052|gb|AAM65970.1| putative GTPase activating protein [Arabidopsis thaliana]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/255 (76%), Positives = 223/255 (87%), Gaps = 6/255 (2%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI-----A 55
           MIE+GGN+SAN+IYEAFIPEG SKPGPD+SH+ R +FIRSKYE QEFLKPSLRI     +
Sbjct: 83  MIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQEFLKPSLRITSVRVS 142

Query: 56  SGKPSASLQSSFSRKIIDSFRSTNSSQKKDV-GMVEFIGLLKVKVVKGINLAIRDMMSSD 114
           S K  A L SS S+KI+DSFR+ +SSQ+  + GMVEFIGLLKV + KG N+AIRDMMSSD
Sbjct: 143 STKTPAFLSSSLSKKIVDSFRTNSSSQQPQLEGMVEFIGLLKVTIKKGTNMAIRDMMSSD 202

Query: 115 PYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAE 174
           PYVVL LGQQ  Q+T+VKSNLNPVWNEELMLSVP  YG VKL+VFD+DTFSADDIMGEAE
Sbjct: 203 PYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAE 262

Query: 175 IDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVE 234
           IDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DNAL+EDS INI DGKVKQ++ +KLQNVE
Sbjct: 263 IDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIADGKVKQEVQIKLQNVE 322

Query: 235 SGELELELEWMPLDQ 249
           SGELELE+EW+PL+Q
Sbjct: 323 SGELELEMEWLPLEQ 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415638|ref|NP_567620.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Arabidopsis thaliana] gi|30685338|ref|NP_849416.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Arabidopsis thaliana] gi|42572969|ref|NP_974581.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Arabidopsis thaliana] gi|42572971|ref|NP_974582.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Arabidopsis thaliana] gi|75172634|sp|Q9FVJ3.1|AGD12_ARATH RecName: Full=ADP-ribosylation factor GTPase-activating protein AGD12; Short=ARF GAP AGD12; AltName: Full=Protein ARF-GAP DOMAIN 12; Short=AtAGD12; AltName: Full=Zinc- and calcium-binding protein; Short=AtZAC gi|9957238|gb|AAG09280.1|AF177381_1 zinc finger and C2 domain protein [Arabidopsis thaliana] gi|17064946|gb|AAL32627.1| putative protein [Arabidopsis thaliana] gi|31711810|gb|AAP68261.1| At4g21160 [Arabidopsis thaliana] gi|332659011|gb|AEE84411.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Arabidopsis thaliana] gi|332659012|gb|AEE84412.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Arabidopsis thaliana] gi|332659013|gb|AEE84413.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Arabidopsis thaliana] gi|332659014|gb|AEE84414.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Arabidopsis thaliana]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/255 (76%), Positives = 223/255 (87%), Gaps = 6/255 (2%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI-----A 55
           MIE+GGN+SAN+IYEAFIPEG SKPGPD+SH+ R +FIRSKYE QEFLKPSLRI     +
Sbjct: 83  MIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQEFLKPSLRITSVRGS 142

Query: 56  SGKPSASLQSSFSRKIIDSFRSTNSSQKKDV-GMVEFIGLLKVKVVKGINLAIRDMMSSD 114
           S K  A L SS S+KI+DSFR+ +SSQ+  + GMVEFIGLLKV + KG N+AIRDMMSSD
Sbjct: 143 STKTPAFLSSSLSKKIVDSFRTNSSSQQPQLEGMVEFIGLLKVTIKKGTNMAIRDMMSSD 202

Query: 115 PYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAE 174
           PYVVL LGQQ  Q+T+VKSNLNPVWNEELMLSVP  YG VKL+VFD+DTFSADDIMGEAE
Sbjct: 203 PYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAE 262

Query: 175 IDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVE 234
           IDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DNAL+EDS INI DGKVKQ++ +KLQNVE
Sbjct: 263 IDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIADGKVKQEVQIKLQNVE 322

Query: 235 SGELELELEWMPLDQ 249
           SGELELE+EW+PL+Q
Sbjct: 323 SGELELEMEWLPLEQ 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|311701729|gb|ADQ00629.1| ARF-GAP protein [Phytolacca acinosa]

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/251 (76%), Positives = 232/251 (92%), Gaps = 2/251 (0%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPS 60
           M+EVGGN++ANAIYEAFIPEG SKPGPD+SH+ R +FIRSKYELQEFLKPSLRI S    
Sbjct: 82  MVEVGGNAAANAIYEAFIPEGRSKPGPDASHDDRMRFIRSKYELQEFLKPSLRIVSMSDK 141

Query: 61  ASLQSSFSRKIIDSFRSTNSSQKKDV--GMVEFIGLLKVKVVKGINLAIRDMMSSDPYVV 118
           +SLQ+SFS+K+++SFRS+NSS+K +   GMVEFIG+LKVKVVKG NLA+RDM+SSDPYVV
Sbjct: 142 SSLQASFSKKLVNSFRSSNSSKKSENSEGMVEFIGVLKVKVVKGTNLAVRDMLSSDPYVV 201

Query: 119 LRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQ 178
           L LGQQTVQT++V+SNLNPVWNEELMLSVPQ YGPVK++VFD+DTFSADDIMGEAE+DIQ
Sbjct: 202 LNLGQQTVQTSVVRSNLNPVWNEELMLSVPQRYGPVKVKVFDYDTFSADDIMGEAELDIQ 261

Query: 179 PLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGEL 238
           PL+TSA+A+GDP MFG+MQIGKWLKS DNAL+EDS INI++GKVKQ++ LKLQNVESG+L
Sbjct: 262 PLITSAMAYGDPGMFGDMQIGKWLKSQDNALIEDSIINIVNGKVKQEMQLKLQNVESGDL 321

Query: 239 ELELEWMPLDQ 249
           E+E+EW+PL+Q
Sbjct: 322 EIEVEWVPLEQ 332

Source: Phytolacca acinosa

Species: Phytolacca acinosa

Genus: Phytolacca

Family: Phytolaccaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7267293|emb|CAB81075.1| putative protein [Arabidopsis thaliana]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/253 (74%), Positives = 224/253 (88%), Gaps = 5/253 (1%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGK-- 58
           MIE+GGN+SAN+IYEAF+P+  SKPGPD +H+ R +FIR+KYELQEFLKPSLRI SGK  
Sbjct: 83  MIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQRMRFIRAKYELQEFLKPSLRITSGKGS 142

Query: 59  --PSASLQSSFSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPY 116
              SA L SS SRKI+DSFR+ +SSQ  + GMVEFIGLLKV + KG NLAIRDMMSSDPY
Sbjct: 143 TKSSAFLTSSLSRKIMDSFRTNSSSQTME-GMVEFIGLLKVTIKKGTNLAIRDMMSSDPY 201

Query: 117 VVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEID 176
           VVL LG+Q +QTT++ SNLNPVWN+ELMLSVP+ YGPVKL+V+D+DTFSADDIMGEA+ID
Sbjct: 202 VVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPVKLQVYDYDTFSADDIMGEADID 261

Query: 177 IQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESG 236
           IQPL+TSA+AFGDPEMFG+MQIGKWLKS DN L++DS INI+DGKVKQ++ +KLQNVESG
Sbjct: 262 IQPLITSAMAFGDPEMFGDMQIGKWLKSHDNPLIDDSIINIVDGKVKQEVQIKLQNVESG 321

Query: 237 ELELELEWMPLDQ 249
           ELELE+EW+PLDQ
Sbjct: 322 ELELEMEWLPLDQ 334

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412932|ref|NP_567292.1| putative ADP-ribosylation factor GTPase-activating protein AGD13 [Arabidopsis thaliana] gi|75155915|sp|Q8LFN9.1|AGD13_ARATH RecName: Full=Probable ADP-ribosylation factor GTPase-activating protein AGD13; Short=ARF GAP AGD13; AltName: Full=Protein ARF-GAP DOMAIN 13; Short=AtAGD13 gi|21536965|gb|AAM61306.1| putative zinc finger and C2 domain protein [Arabidopsis thaliana] gi|89000963|gb|ABD59071.1| At4g05330 [Arabidopsis thaliana] gi|332657106|gb|AEE82506.1| putative ADP-ribosylation factor GTPase-activating protein AGD13 [Arabidopsis thaliana]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/254 (74%), Positives = 223/254 (87%), Gaps = 5/254 (1%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGK-- 58
           MIE+GGN+SAN+IYEAF+P+  SKPGPD +H+ R +FIR+KYELQEFLKPSLRI SGK  
Sbjct: 83  MIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQRMRFIRAKYELQEFLKPSLRITSGKGS 142

Query: 59  --PSASLQSSFSRKIIDSFRSTNSSQKK-DVGMVEFIGLLKVKVVKGINLAIRDMMSSDP 115
              SA L SS SRKI+DSFR+ +SSQ     GMVEFIGLLKV + KG NLAIRDMMSSDP
Sbjct: 143 TKSSAFLTSSLSRKIMDSFRTNSSSQTMFQEGMVEFIGLLKVTIKKGTNLAIRDMMSSDP 202

Query: 116 YVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEI 175
           YVVL LG+Q +QTT++ SNLNPVWN+ELMLSVP+ YGPVKL+V+D+DTFSADDIMGEA+I
Sbjct: 203 YVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPVKLQVYDYDTFSADDIMGEADI 262

Query: 176 DIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVES 235
           DIQPL+TSA+AFGDPEMFG+MQIGKWLKS DN L++DS INI+DGKVKQ++ +KLQNVES
Sbjct: 263 DIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNPLIDDSIINIVDGKVKQEVQIKLQNVES 322

Query: 236 GELELELEWMPLDQ 249
           GELELE+EW+PLDQ
Sbjct: 323 GELELEMEWLPLDQ 336

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2127338	337	ZAC [Arabidopsis thaliana (tax	1.0	0.738	0.764	5.6e-100
TAIR|locus:2115904	336	AGD13 "ARF-GAP domain 13" [Ara	1.0	0.741	0.744	3.9e-99
TAIR|locus:2077367	385	AT3G07940 [Arabidopsis thalian	0.803	0.519	0.532	3.8e-60
TAIR|locus:2014015	174	EHB1 "AT1G70800" [Arabidopsis	0.650	0.931	0.441	1.4e-32
TAIR|locus:2035042	168	AT1G73580 "AT1G73580" [Arabido	0.626	0.928	0.466	3.7e-32
TAIR|locus:2013905	185	AT1G70790 "AT1G70790" [Arabido	0.614	0.827	0.467	7.7e-32
TAIR|locus:2014020	165	AT1G70810 "AT1G70810" [Arabido	0.638	0.963	0.443	7.7e-32
TAIR|locus:2201497	174	AT1G66360 "AT1G66360" [Arabido	0.618	0.885	0.484	1.3e-31
TAIR|locus:2049602	180	AT2G01540 "AT2G01540" [Arabido	0.610	0.844	0.470	2e-31
TAIR|locus:2088505	177	C2 "AT3G17980" [Arabidopsis th	0.638	0.898	0.412	6.9e-31

TAIR|locus:2127338 ZAC [Arabidopsis thaliana (taxid:3702)]

 Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
 Identities = 195/255 (76%), Positives = 223/255 (87%)

Query:     1 MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIAS--G- 57
             MIE+GGN+SAN+IYEAFIPEG SKPGPD+SH+ R +FIRSKYE QEFLKPSLRI S  G 
Sbjct:    83 MIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQEFLKPSLRITSVRGS 142

Query:    58 --KPSASLQSSFSRKIIDSFRSTNSSQKKDV-GMVEFIGLLKVKVVKGINLAIRDMMSSD 114
               K  A L SS S+KI+DSFR+ +SSQ+  + GMVEFIGLLKV + KG N+AIRDMMSSD
Sbjct:   143 STKTPAFLSSSLSKKIVDSFRTNSSSQQPQLEGMVEFIGLLKVTIKKGTNMAIRDMMSSD 202

Query:   115 PYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAE 174
             PYVVL LGQQ  Q+T+VKSNLNPVWNEELMLSVP  YG VKL+VFD+DTFSADDIMGEAE
Sbjct:   203 PYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAE 262

Query:   175 IDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVE 234
             IDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DNAL+EDS INI DGKVKQ++ +KLQNVE
Sbjct:   263 IDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIADGKVKQEVQIKLQNVE 322

Query:   235 SGELELELEWMPLDQ 249
             SGELELE+EW+PL+Q
Sbjct:   323 SGELELEMEWLPLEQ 337

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2115904 AGD13 "ARF-GAP domain 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
 Identities = 189/254 (74%), Positives = 223/254 (87%)

Query:     1 MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGK-- 58
             MIE+GGN+SAN+IYEAF+P+  SKPGPD +H+ R +FIR+KYELQEFLKPSLRI SGK  
Sbjct:    83 MIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQRMRFIRAKYELQEFLKPSLRITSGKGS 142

Query:    59 --PSASLQSSFSRKIIDSFRSTNSSQKK-DVGMVEFIGLLKVKVVKGINLAIRDMMSSDP 115
                SA L SS SRKI+DSFR+ +SSQ     GMVEFIGLLKV + KG NLAIRDMMSSDP
Sbjct:   143 TKSSAFLTSSLSRKIMDSFRTNSSSQTMFQEGMVEFIGLLKVTIKKGTNLAIRDMMSSDP 202

Query:   116 YVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEI 175
             YVVL LG+Q +QTT++ SNLNPVWN+ELMLSVP+ YGPVKL+V+D+DTFSADDIMGEA+I
Sbjct:   203 YVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPVKLQVYDYDTFSADDIMGEADI 262

Query:   176 DIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVES 235
             DIQPL+TSA+AFGDPEMFG+MQIGKWLKS DN L++DS INI+DGKVKQ++ +KLQNVES
Sbjct:   263 DIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNPLIDDSIINIVDGKVKQEVQIKLQNVES 322

Query:   236 GELELELEWMPLDQ 249
             GELELE+EW+PLDQ
Sbjct:   323 GELELEMEWLPLDQ 336

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2077367 AT3G07940 [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
 Identities = 108/203 (53%), Positives = 142/203 (69%)

Query:    50 PSLRIASGKPSASLQSSFSRKIIDSFRSTNSSQKKD---VGMVEFIGLLKVKVVKGINLA 106
             PSL  AS + + +      R       S +   KK     GMVEF+GL+KV VVKG NLA
Sbjct:   183 PSLCSASHRSTKNRIGHAFRNSWGRRESDHKGPKKSNSMAGMVEFVGLIKVNVVKGTNLA 242

Query:   107 IRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSA 166
             +RD+M+SDPYV+L LGQQ+V+T ++K+NLNPVWNE LMLS+P+   P+K+ V+D DTFS 
Sbjct:   243 VRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMPPLKVLVYDKDTFST 302

Query:   167 DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKI 226
             DD MGEAEIDIQPL+++A A+    +   MQ+G W+ S +N L+ D  I + DGKVKQ I
Sbjct:   303 DDFMGEAEIDIQPLVSAAKAYETSSIKEPMQLGSWVASKENTLVSDGIILLEDGKVKQDI 362

Query:   227 SLKLQNVESGELELELEWMPLDQ 249
             SL+LQNVE G LE++LE +PL Q
Sbjct:   363 SLRLQNVERGVLEIQLECLPLTQ 385

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

TAIR|locus:2014015 EHB1 "AT1G70800" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 72/163 (44%), Positives = 112/163 (68%)

Query:    83 KKDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEE 142
             +++V M E +GL+++ V +GI+LA RD +SSDP+VV+ +G Q +++  VK+N NP WNEE
Sbjct:     5 EEEVEMKELVGLVRILVKRGIDLARRDALSSDPFVVITMGPQKLKSFTVKNNCNPEWNEE 64

Query:   143 LMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWL 202
             L L++     PVKL V+D DTF+ADD MG+A+ID++P L      G  E+    ++ + +
Sbjct:    65 LTLAIEDPNEPVKLMVYDKDTFTADDKMGDAQIDMKPFL-DVHKLGLKELPHGKELKRIV 123

Query:   203 KSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM 245
              + DN L EDS I   +GK+ Q + L L+NVE G++E++LEW+
Sbjct:   124 PTRDNCLSEDSIIVSDNGKIVQDMILLLKNVECGKVEIQLEWL 166

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009637 "response to blue light" evidence=IMP

GO:0009638 "phototropism" evidence=IMP

TAIR|locus:2035042 AT1G73580 "AT1G73580" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 76/163 (46%), Positives = 109/163 (66%)

Query:    88 MVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV 147
             M   +G+L+V+V +G+NLA+RD+ SSDPYVVL+LG+Q ++T +VK N+NP W E+L  +V
Sbjct:     4 MDNLLGILRVRVQRGVNLAVRDVSSSDPYVVLKLGRQKLKTKVVKQNVNPQWQEDLSFTV 63

Query:   148 PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAF---GDPEMFGNMQIGKWLKS 204
                  P+ L V+DHD FS DD MG+AEID++P +  AL     G P+      IG    S
Sbjct:    64 TDPNLPLTLIVYDHDFFSKDDKMGDAEIDLKPYI-EALRMELSGLPDGTIISTIGP---S 119

Query:   205 DDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPL 247
               N L E+S I  I+ ++ Q I L+L+NVE GE+E+EL+W+ L
Sbjct:   120 RGNCLAEESYIRWINDRIVQHICLRLRNVERGEVEIELQWIDL 162

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2013905 AT1G70790 "AT1G70790" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 72/154 (46%), Positives = 101/154 (65%)

Query:    92 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEY 151
             +G+L+V V +GINLAIRD  +SDPYVV+ L  Q ++T ++ +N NPVWNE+L LS+    
Sbjct:     6 LGILRVHVKRGINLAIRDATTSDPYVVITLANQKLKTRVINNNCNPVWNEQLTLSIKDVN 65

Query:   152 GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGN-MQIGKWLKSDDNALL 210
              P++L VFD D FS DD MG+AEID +P L +     D +   N   I +      N L 
Sbjct:    66 DPIRLTVFDKDRFSGDDKMGDAEIDFRPFLEAHQMELDFQKLPNGCAIKRIRPGRTNCLA 125

Query:   211 EDSTINIIDGKVKQKISLKLQNVESGELELELEW 244
             E+S+I   +GK+ Q++ L+L+NVE GE+EL LEW
Sbjct:   126 EESSITWSNGKIMQEMILRLKNVECGEVELMLEW 159

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014020 AT1G70810 "AT1G70810" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 71/160 (44%), Positives = 109/160 (68%)

Query:    88 MVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV 147
             M E +GLL+++V +GINLA RD +SSDP+VV+ +G Q ++T +V++N NP WNEEL L++
Sbjct:     1 MEELVGLLRIRVKRGINLAQRDTLSSDPFVVITMGSQKLKTRVVENNCNPEWNEELTLAL 60

Query:   148 PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 207
                  PV L V+D DTF++ D MG+A+IDI+P L      G  E+    +I + + + +N
Sbjct:    61 RHPDEPVNLIVYDKDTFTSHDKMGDAKIDIKPFL-EVHKMGLQELPDGTEIKRVVPNREN 119

Query:   208 ALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPL 247
              L E S+I   +GK+ Q + L L+NVE GE+E++LEW+ +
Sbjct:   120 CLAEASSIVSNNGKIVQNMILLLRNVECGEVEIQLEWIDI 159

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2201497 AT1G66360 "AT1G66360" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 79/163 (48%), Positives = 105/163 (64%)

Query:    88 MVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV 147
             M   +GLL++ V++G+NLAIRD  SSDPYV++R+G+Q ++T ++K NLN  WNE+L LSV
Sbjct:     1 MENMLGLLRLHVIRGVNLAIRDSQSSDPYVIVRMGKQKLRTRVMKKNLNTEWNEDLTLSV 60

Query:   148 PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAF-----GDPEMFGNMQIGKWL 202
                  PVK+ V+D D FS DD MG+A   I P L  A+       G PE  G + I K  
Sbjct:    61 TDPTLPVKIMVYDRDRFSRDDKMGDAIFHIDPFL-EAIRIQNQLGGLPE--GTV-IMKIQ 116

Query:   203 KSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM 245
              S  N L E+S I    GK+ Q + LKLQNVE GE+EL+LEW+
Sbjct:   117 ASRQNCLSEESKIVWHKGKIVQNMFLKLQNVERGEIELQLEWI 159

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2049602 AT2G01540 "AT2G01540" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 73/155 (47%), Positives = 100/155 (64%)

Query:    92 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEY 151
             +GLL + V +GINLAIRD  SSDPY+VL +  QT++T +VK N NPVWNEE+ +++    
Sbjct:     6 LGLLTIHVKRGINLAIRDHRSSDPYIVLNVADQTLKTRVVKKNCNPVWNEEMTVAIKDPN 65

Query:   152 GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDP--EMFGNMQIGKWLKSDDNAL 209
              P++L VFD D F+ DD MG+A IDIQP L  AL  G     +     I +   S  N L
Sbjct:    66 VPIRLTVFDWDKFTGDDKMGDANIDIQPYL-EALKMGMELLRLPNGCAIKRVQPSRHNCL 124

Query:   210 LEDSTINIIDGKVKQKISLKLQNVESGELELELEW 244
              ++S+I   +GK+ Q + L+L NVE GE+E+ LEW
Sbjct:   125 SDESSIVWNNGKITQDLILRLNNVECGEIEIMLEW 159

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2088505 C2 "AT3G17980" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 66/160 (41%), Positives = 107/160 (66%)

Query:    88 MVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV 147
             M + +GLL++++ +G+NLA+RD+ SSDPYVV+++G+Q ++T ++  ++NP WNE+L LSV
Sbjct:    13 MDDLLGLLRIRIKRGVNLAVRDISSSDPYVVVKMGKQKLKTRVINKDVNPEWNEDLTLSV 72

Query:   148 PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 207
                   V L V+DHD FS DD MG+AE +I+P + +     D    G + +     S  N
Sbjct:    73 TDSNLTVLLTVYDHDMFSKDDKMGDAEFEIKPYIEALRMQLDGLPSGTI-VTTVKPSRRN 131

Query:   208 ALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPL 247
              L E+S +  +DGK+ Q + L+L++VE GE+E +L+W+ L
Sbjct:   132 CLAEESRVTWVDGKLVQDLVLRLRHVECGEVEAQLQWIDL 171

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FVJ3	AGD12_ARATH	No assigned EC number	0.7607	1.0	0.7388	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	7e-76
cd00030	102	cd00030, C2, C2 domain	9e-24
pfam00168	85	pfam00168, C2, C2 domain	3e-23
smart00239	101	smart00239, C2, Protein kinase C conserved region	3e-22
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	3e-18
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	5e-18
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-17
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	2e-17
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	4e-17
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	9e-17
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	2e-15
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	6e-15
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	9e-14
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	7e-13
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	9e-13
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	9e-12
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	1e-11
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	1e-11
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	2e-11
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	3e-11
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	3e-11
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	4e-11
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	1e-10
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	2e-10
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-10
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	3e-10
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	7e-10
pfam01412	117	pfam01412, ArfGap, Putative GTPase activating prot	7e-10
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	1e-09
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-09
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	2e-09
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	3e-09
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	4e-09
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	6e-09
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	1e-08
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	1e-08
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	2e-08
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	5e-08
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	7e-08
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	8e-08
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	9e-08
smart00105	119	smart00105, ArfGap, Putative GTP-ase activating pr	9e-08
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	1e-07
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	1e-07
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-07
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	2e-07
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	2e-07
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	4e-07
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	4e-07
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	5e-07
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	8e-07
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	9e-07
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	1e-06
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	1e-06
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	1e-06
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	1e-06
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	2e-06
PLN03008	868	PLN03008, PLN03008, Phospholipase D delta	2e-06
cd04016	121	cd04016, C2_Tollip, C2 domain present in Toll-inte	3e-06
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	3e-06
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	3e-06
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	5e-06
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	5e-06
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	7e-06
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	9e-06
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	9e-06
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	2e-05
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	4e-05
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	9e-05
cd08407	138	cd08407, C2B_Synaptotagmin-13, C2 domain second re	9e-05
cd04014	132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	1e-04
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	3e-04
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	6e-04
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	7e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	0.001
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	0.001
PLN02964	644	PLN02964, PLN02964, phosphatidylserine decarboxyla	0.001
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	0.001
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	0.002
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	0.003

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score =  226 bits (577), Expect = 7e-76
 Identities = 86/145 (59%), Positives = 104/145 (71%)

Query: 92  IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEY 151
           +GLLKV+VV+G NLA+RD  SSDPYVVL LG Q V+T ++K NLNPVWNEEL LSVP   
Sbjct: 1   LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPM 60

Query: 152 GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLE 211
            P+KLEVFD DTFS DD MGEAEID++PL+ +A      +  G  QI K L S +N L  
Sbjct: 61  APLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLAS 120

Query: 212 DSTINIIDGKVKQKISLKLQNVESG 236
           +S I   DGK+ Q + LKL+NVESG
Sbjct: 121 ESHITWKDGKIVQDLVLKLRNVESG 145

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 91.4 bits (227), Expect = 9e-24
 Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 95  LKVKVVKGINLAIRDMM-SSDPYVVLRLG-QQTVQTTIVKSNLNPVWNEELMLSV-PQEY 151
           L+V V++  NL  +D+   SDPYV + LG +Q  +T +VK+ LNPVWNE     V   E 
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 152 GPVKLEVFDHDTFSADDIMGEAEIDIQPLL 181
             + +EV+D D FS DD +GE EI +  LL
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSELL 90

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 89.6 bits (223), Expect = 3e-23
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 95  LKVKVVKGINLAIRDMMS-SDPYVVLRLGQQTV---QTTIVKSNLNPVWNEELMLSVPQE 150
           L+V V+   NL  +D+   SDPYV + LG Q     +T +VK+ LNPVWNE     V   
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 151 YGP-VKLEVFDHDTFSADDIMGEAE 174
               +++EV+D+D F  DD +GE  
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 87.2 bits (216), Expect = 3e-22
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 5/95 (5%)

Query: 94  LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTV---QTTIVKSNLNPVWNEELMLSV-P 148
            L VK++   NL  +D    SDPYV + L        +T +VK+ LNPVWNE     V P
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 149 QEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 183
            E   +++EV+D D F  DD +G+  I +  LL  
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG 95

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 77.7 bits (192), Expect = 3e-18
 Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 9/113 (7%)

Query: 94  LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTV--QTTIVKSNLNPVWNEELMLSVPQE 150
            L + + +G NLA RD   +SDPYV  + G +TV    TI K NLNPVW+E+  L +   
Sbjct: 1   QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYK-NLNPVWDEKFTLPIEDV 59

Query: 151 YGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS-----ALAFGDPEMFGNMQI 198
             P+ ++VFD+D    DD MG A +D+  L  +      L   DP    ++  
Sbjct: 60  TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGY 112

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 77.4 bits (191), Expect = 5e-18
 Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 10/99 (10%)

Query: 94  LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-------QTVQTTIVKSNLNPVWNEELML 145
           +L+VKV+ GI+LA +D+  +SDPYV + L          +VQT  +K  LNP WNEE   
Sbjct: 1   ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60

Query: 146 SV-PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 183
            V P+E+  +  EVFD +  + DD +G+ E+ +  L T 
Sbjct: 61  RVNPREH-RLLFEVFDENRLTRDDFLGQVEVPLNNLPTE 98

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 9/93 (9%)

Query: 93  GLLKVKVVKGINLAIRDMM-------SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELML 145
           G+L++ V++  +L  +D          SDPYV++R+G QT ++ ++K NLNP WNE    
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEA 60

Query: 146 SVPQEYG-PVKLEVFDHDTFSADDIMGEAEIDI 177
            V +  G  +++E+FD D    DD +G   ID+
Sbjct: 61  VVDEVPGQELEIELFDEDP-DKDDFLGRLSIDL 92

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 75.0 bits (185), Expect = 2e-17
 Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 6/95 (6%)

Query: 95  LKVKVVKGINLAIRDMMS--SDPYVVLRLGQQTVQTTIVKSNLNPVWN-EELMLSVPQEY 151
           LKV+VV   +L + D  S  +D +V ++ G  T +T +VK +LNPVWN E     V  E 
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60

Query: 152 ---GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 183
               P+++ V DHDT+SA+D +G+  ID+ PLL  
Sbjct: 61  LQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLK 95

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 74.2 bits (183), Expect = 4e-17
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 9/98 (9%)

Query: 93  GLLKVKVVKGINLAIRD--MMSSDPYVVL---RLGQQTVQTTIVKSNLNPVWNEE-LMLS 146
           G+L V + +  +L   D    SSDPYV     + G+    T I++ +LNPVW E   +L 
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60

Query: 147 VPQEYGP---VKLEVFDHDTFSADDIMGEAEIDIQPLL 181
            P E      +   ++D D F+ADD +G  EID++ L+
Sbjct: 61  TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI 98

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 74.0 bits (182), Expect = 9e-17
 Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 38/159 (23%)

Query: 93  GLLKVKVVKGINLAIRDMMS---SDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ 149
           G+L+V VV+  +LA +D      SDPY +L +G Q  +T  + + LNP WN      +  
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFS 60

Query: 150 EYGP-VKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIG---KWLKSD 205
                +KL ++D D F+  D +GE +I ++            E+F + + G   KW+   
Sbjct: 61  AQNQLLKLILWDKDRFAGKDYLGEFDIALE------------EVFADGKTGQSDKWITLK 108

Query: 206 DNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 244
                                     +V SGE+ L+  W
Sbjct: 109 ST-------------------RPGKTSVVSGEIHLQFSW 128

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 69.9 bits (172), Expect = 2e-15
 Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 6/89 (6%)

Query: 94  LLKVKVVKGINLAIRDMMS-SDPYVVLRLGQQTV--QTTIVKSNLNPVWNE--ELMLSVP 148
           L++V VV+  NL  +D    SDPY+ ++LG++ +  +   + + LNPV+ +  EL  ++P
Sbjct: 1   LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP 60

Query: 149 QEYGPVKLEVFDHDTFSADDIMGEAEIDI 177
                +K+ V D+D   +DD++GE  ID+
Sbjct: 61  GN-SILKISVMDYDLLGSDDLIGETVIDL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 68.7 bits (169), Expect = 6e-15
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 95  LKVKVVKGINLAIRDMMS-SDPYVVLRL-GQQTVQTTIVKSNLNPVWNEELMLSVPQEYG 152
           L V V+   NL   D    SDP+V   L G++  +T  +K  LNPVWNE   + VP    
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVR 60

Query: 153 P-VKLEVFDHDTFSADDIMGEAEIDIQPL 180
             +K+EV+D D    DD++G A ID+  L
Sbjct: 61  AVLKVEVYDWDRGGKDDLLGSAYIDLSDL 89

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 65.3 bits (160), Expect = 9e-14
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 93  GLLKVKVVKGINLA-IRDMMSSDPYVVLRLGQQTVQT-TIVKSNLNPVWNEELMLSVPQE 150
           G L V V+K  NL   R +   DPY VLR+G  T +T T  +   +P W+EEL   + ++
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED 60

Query: 151 YGPV-KLEVFDHDTFSADDIMGEAEIDIQPLLT 182
             P+ K+ VFD D     D++G+ E+D+ P L 
Sbjct: 61  KKPILKVAVFD-DDKRKPDLIGDTEVDLSPALK 92

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 63.1 bits (154), Expect = 7e-13
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEY 151
           G L+VKV++   LA  D+   SDP+ VL L    +QT  +   LNP WN+     +   +
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH 60

Query: 152 GPVKLEVFDHDTFSADDIMGEAEIDIQPLLT 182
             +++ V+D D     + +G+  I   PLL+
Sbjct: 61  DVLEVTVYDEDKDKKPEFLGKVAI---PLLS 88

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 63.0 bits (154), Expect = 9e-13
 Identities = 39/159 (24%), Positives = 59/159 (37%), Gaps = 39/159 (24%)

Query: 92  IGLLKVKVVKGINLAIRDMMSS--DPYVVLRLGQQTV--QTTIVKSNLNPVWNEELMLSV 147
           IG+L V +     L   D++    DPYV   +  +    +T + K   NPVWNE   + V
Sbjct: 1   IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILV 60

Query: 148 PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 207
                P+ L V+D +    D ++G AE D+  LL                         N
Sbjct: 61  NSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLL------------------------QN 96

Query: 208 ALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 246
              E+ T N++                 GEL  +L + P
Sbjct: 97  PEQENLTKNLLRN-----------GKPVGELNYDLRFFP 124

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 60.0 bits (146), Expect = 9e-12
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 93  GLLKVKVVKGINLAIRDMMSS-DPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQE 150
           G L+V ++    L   D +   DPYV+++   Q  ++ + K    NP WNE+   +V   
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYP 60

Query: 151 YGPV----KLEVFDHDTFSADDIMGEAEIDIQPLLT 182
                    L + D D FS DD +GEA I ++ L  
Sbjct: 61  GWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFE 96

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 12/74 (16%)

Query: 112 SSDPYVVLRL-------GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVK-----LEVF 159
           SSDP+V + L          T +T + K  L P+++E    +VP E   V+       V 
Sbjct: 36  SSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95

Query: 160 DHDTFSADDIMGEA 173
           D+D   ++D  GEA
Sbjct: 96  DYDLLGSNDFEGEA 109

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 48/158 (30%)

Query: 94  LLKVKVVKGINLAIRDMMS-SDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ 149
           LL V+V++  N+   D++S  D YV L L     +  +T  +K+++NPVWNE     +  
Sbjct: 1   LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQS 60

Query: 150 EYGPVK----LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD 205
           +   VK    L V D D    DD +G    D+                  +++G+     
Sbjct: 61  Q---VKNVLELTVMDEDYVM-DDHLGTVLFDV----------------SKLKLGE----- 95

Query: 206 DNALLEDSTINIIDGKVKQKISLKLQNVESGELELELE 243
                          KV+   SL  Q  E  E+E  LE
Sbjct: 96  ---------------KVRVTFSLNPQGKEELEVEFLLE 118

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 95  LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTV-QTTIVKSNLNPVWNEELMLSVPQEYG 152
           L +++V+G NL  +D+  SSDPY ++++  + + +T  V   LNP W EE  + +P  + 
Sbjct: 2   LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFH 61

Query: 153 PVKLEVFDHDTFSADDIMGEAEI 175
            V   V D DT S DD++G+  +
Sbjct: 62  TVSFYVLDEDTLSRDDVIGKVSL 84

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 7/79 (8%)

Query: 109 DMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV-PQE--YGPVKLEVFDHDTFS 165
           DM   DP+V++  G++  +T+  +  LNPV+NE L   V P E  +  ++ +V D D FS
Sbjct: 25  DM---DPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFD-IQFKVLDKDKFS 80

Query: 166 ADDIMGEAEIDIQPLLTSA 184
            +D +    + +Q LL +A
Sbjct: 81  FNDYVATGSLSVQELLNAA 99

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 7/92 (7%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP 148
             L V +++  +L   DM  +SDPYV + L    ++  +T + +  LNPV+NE     VP
Sbjct: 16  NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVP 75

Query: 149 Q-EYGPVKL--EVFDHDTFSADDIMGEAEIDI 177
             E G   L   V+D D FS  D++GE  + +
Sbjct: 76  YSELGNKTLVFSVYDFDRFSKHDLIGEVRVPL 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 58.7 bits (142), Expect = 4e-11
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 95  LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYG 152
           L+  V++  +LA +D   +SDP+V +    QT++T++VK +  P WNE     + +    
Sbjct: 2   LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADS 61

Query: 153 PVKLEVFDHDTFSADDIMGEAEIDIQPL 180
           P+ +EV+D D  S +D +G+    IQ L
Sbjct: 62  PLSVEVWDWDLVSKNDFLGKVVFSIQTL 89

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 89  VEFIGLLKVKVVKGINLAIRDMMS-SDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV 147
              IG L V +V+G +L   +    SDPY  + +G Q  +T +V   LNP WN  +   V
Sbjct: 11  ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFV 70

Query: 148 PQEYGPVK-LEVFDHDTFSADDIMGEAEIDIQPLLTSA 184
                 V  + VFD D FS DD +G  EI +  +L   
Sbjct: 71  KDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKET 108

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 113 SDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV---PQEY--GPVKLEVFDHDTFSAD 167
            DP V + +G Q   T++ K    P +NE    +    P E     +K+ V+D  +  +D
Sbjct: 21  IDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD 80

Query: 168 DIMGEAEIDI 177
            ++G  ++D+
Sbjct: 81  TLIGSFKLDV 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 16/95 (16%)

Query: 95  LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQE 150
           L +K++K + L  +D   +SDP+V + L       ++T + + NLNP WNE  +     E
Sbjct: 18  LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF----E 73

Query: 151 YGPVK--------LEVFDHDTFSADDIMGEAEIDI 177
             P +        L+V D+D FS +D +GE  + +
Sbjct: 74  GFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPL 108

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 94  LLKVKVVKGINLAIRDMMS-SDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV-PQEY 151
           ++ + +V+G NL   D    SDPYV  RLG +  ++ +    LNP W E+  L +   + 
Sbjct: 1   VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQS 60

Query: 152 GPVKLEVFDHDTFSADDIMGEAEIDI 177
             +++EV+D DT   D+ +G  EID+
Sbjct: 61  QILEIEVWDKDTGKKDEFIGRCEIDL 86

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 55.3 bits (134), Expect = 7e-10
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 93  GLLKVKVVKGINLAIRDM-MSSDPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLS 146
             L V V+K  NL   D    SDPYV + L Q        +T++ K  LNPV+NE     
Sbjct: 14  ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD 73

Query: 147 VPQEYGP---VKLEVFDHDTFSADDIMGEAEI 175
           VP E      + + V D D+   ++++G+  +
Sbjct: 74  VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf

 Score = 54.9 bits (133), Expect = 7e-10
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS 51
            ++ GGN  AN  +EA +P     P   S  E R  FIR+KY  + F +  
Sbjct: 68  FMKAGGNKRANEFWEANLP-PPKPPPSSSDREKRESFIRAKYVEKLFAEAE 117

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 45/129 (34%), Positives = 60/129 (46%), Gaps = 8/129 (6%)

Query: 84   KDVGMVEFIGLLKVKVVKGINLAIRDMMS-SDPYVVLRLGQQTVQTT-IVKSNLNPVWNE 141
              V MVE  G L + +  G NL   D    SDP+V L L +++V  T +VK  LNPVWNE
Sbjct: 1031 PPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNE 1090

Query: 142  ELMLSVPQEYGP-VKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGK 200
            E  + V       + + V D D+   +D++G AEID+     S L  G          GK
Sbjct: 1091 EFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDL-----SKLEPGGTTNSNIPLDGK 1145

Query: 201  WLKSDDNAL 209
                 D  L
Sbjct: 1146 TFIVLDGTL 1154

Length = 1227

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQTVQ---TTIVKSNLNPVWNEELMLS 146
             + V ++K  NL   D+  +SDPYV + L    + V+   T I K  LNPV+NE  + +
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Query: 147 VPQEY---GPVKLEVFDHDTFSADDIMGEA 173
           +P E      + + V D D  S +D++G+ 
Sbjct: 75  IPLERLRETTLIITVMDKDRLSRNDLIGKI 104

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 93  GLLKVKVVKGINLAIRDMMS-SDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP 148
           G+L VK+++  NL  RD    +DPY  +RL      T Q+ I K  LNP ++E  +  VP
Sbjct: 16  GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVP 75

Query: 149 -QEYGPVKLEV--FDHDTFSADDIMGEAEI 175
            QE     LEV  +D D FS D+ +G  E+
Sbjct: 76  PQELPKRTLEVLLYDFDQFSRDECIGVVEL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 95  LKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQTV---QTTIVKSNLNPVWNEELMLSVP 148
           L V V+K  +L   D+   +DPYV + L  G++ +   +T + K  LNPV+NE  +  +P
Sbjct: 17  LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76

Query: 149 QEYGP---VKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKW 201
            E      V+  V D D  + ++++G   +  +   +    + +       QI +W
Sbjct: 77  SEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQIAEW 132

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 21/119 (17%)

Query: 93  GLLKVKVVKGINLAIRDMMS-SDPYVVLRL----GQQTVQ-TTIVKSNLNPVWNEELMLS 146
             L V+V +  NL   D    SDPYV L+L      +T Q T  +K  LNPVWNE     
Sbjct: 13  NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD 72

Query: 147 VPQEYGPVKL--EVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK 203
           +       +L  EV+D D  + +D MG            +L+FG  E+   M +  W K
Sbjct: 73  LKPADKDRRLSIEVWDWDRTTRNDFMG------------SLSFGVSELI-KMPVDGWYK 118

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 93  GLLKVKVVKGINLAIRDM--MSSDPYVVLRL----GQQTVQTTIVKSN-LNPVWNEELML 145
           G L+V + +  NLA  D     S+PYV + L     +Q+ + T VK N  NPV+NE L  
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY 73

Query: 146 SVPQ---EYGPVKLEVFDHDTFSADDIMGEAEIDIQ 178
            + +   E   ++L V+ HD F  +  +GE EI + 
Sbjct: 74  HISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLD 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 12/98 (12%)

Query: 95  LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGP 153
           + + VV    L  +D   +SDPYV +++G+   +T  +  NLNPVWNE+           
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62

Query: 154 VKLEVFDHD-----------TFSADDIMGEAEIDIQPL 180
           +K+ V+D D           T  +DD +G+  I+++ L
Sbjct: 63  IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL 100

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 22/100 (22%)

Query: 95  LKVKVVKGINLAIRDMMS-SDPYVVLRLGQQTV-----QTTIVKSNLNPVWNEELMLSVP 148
           L V V++  +L  RD  S  +PYV + L          +T  VK  LNP WN+       
Sbjct: 18  LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTF----- 72

Query: 149 QEYGPVKLE----------VFDHDTFSADDIMGEAEIDIQ 178
            EY  V+ E          V+D+D    +D +GE  ID+ 
Sbjct: 73  -EYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLA 111

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 95  LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEEL-----MLSVPQ 149
           L V V++   L      S+D YV +  G Q  +T ++ +N NP WN         LS   
Sbjct: 30  LTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELS--- 86

Query: 150 EYGPVKLEVFDHDTFSADDIMGEAEI 175
             G ++ EV+D D    DD++G   +
Sbjct: 87  PGGKLRFEVWDRDNGWDDDLLGTCSV 112

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 19/84 (22%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 97  VKVVKGINLAIRDM-MSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVK 155
           V V     L+ +D    +DPYV+++   ++V++ + K  L+P ++ + +    +   P+K
Sbjct: 7   VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIK 66

Query: 156 LEVFDHDTFSADDIMGEAEIDIQP 179
           ++V++ +    D+ +G+A +   P
Sbjct: 67  IQVWNSNLLC-DEFLGQATLSADP 89

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 114 DPYV-VLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE 172
           DPYV V   GQ   +T + K   NP WNE   + V      ++ +V+ H T  AD ++GE
Sbjct: 23  DPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLV-TPQSTLEFKVWSHHTLKADVLLGE 81

Query: 173 AEIDIQPLL 181
           A +D+  +L
Sbjct: 82  ASLDLSDIL 90

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 49.1 bits (118), Expect = 8e-08
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 13/96 (13%)

Query: 100 VKGINLAIRDMMS-SDPYVVL-RL---GQQTV--QTTIVKSNLNPVWNEELMLSVPQEYG 152
             G  L  +D    SDP++ + R    G   +  +T ++K+ LNPVW     + + +   
Sbjct: 7   FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCN 65

Query: 153 -----PVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 183
                P+K+EV+D+D+    D++GE E  +  LL S
Sbjct: 66  GDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKS 101

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 49.9 bits (120), Expect = 9e-08
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 114 DPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGP-----VKLEVFDHDTFSADD 168
           DPYV +    Q V+T++ K++ NP WNE+++     E  P     +K+++ D D    DD
Sbjct: 36  DPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVF---PEMFPPLCERIKIQIRDWDRVGNDD 92

Query: 169 IMGEAEIDIQ 178
           ++G   ID+ 
Sbjct: 93  VIGTHFIDLS 102

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 50
           +++ GGN +AN+I+E+ + +   KP  D   +    FI +KYE + F+ P
Sbjct: 65  LLQKGGNENANSIWESNLDDFSLKPPDDDDQQKYESFIAAKYEEKLFVPP 114

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 119

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 9/88 (10%)

Query: 93  GLLKVKVVKGINLAIRDMMS-SDPYVVLRL---GQ--QTVQTTIVKSNLNPVWNEELMLS 146
           G L + ++K  NL   D+   SDPYV + L   G+  +  +T++ K+ LNP +NE L+  
Sbjct: 14  GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73

Query: 147 VPQE-YGPVKL--EVFDHDTFSADDIMG 171
           VP E    V L   V D+D    ++++G
Sbjct: 74  VPPENVDNVSLIIAVVDYDRVGHNELIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 10/93 (10%)

Query: 95  LKVKVVKGINLAIRD--MMSSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSV 147
           L V V++  +LA  D     SDPYV   L      +   +T++ K  LNPV+NE L   V
Sbjct: 17  LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKV 76

Query: 148 PQEYGPVK---LEVFDHDTFSADDIMGEAEIDI 177
            +E  P +   L V+  D+   +  +GE E+D+
Sbjct: 77  EREELPTRVLNLSVWHRDSLGRNSFLGEVEVDL 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 92  IGLLKVKVVKGINLAIRDMM---SSDPYVVLRLGQQTVQTTIVKSN-LNPVWNEELMLSV 147
           IG+++VK+     L   D     + DPY+ +    + +  T VK N LNPVWNE   + +
Sbjct: 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILL 494

Query: 148 PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLL 181
                P+ L ++D ++F +D ++G  ++D+  L 
Sbjct: 495 NSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLH 528

Length = 1227

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 113 SDPYVVLRLGQQTVQTTIVKSNLNPVWNEELM---LSVP------QEYGP-VKLEVFDHD 162
           SDP+  +    Q+ +T ++K  L+P W++ L+   + +        +  P V +E+FD D
Sbjct: 22  SDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81

Query: 163 TFSADDIMG 171
           +   D+ +G
Sbjct: 82  SVGKDEFLG 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 113 SDPYVVLRL-GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG 171
            DPYV + + G    +T  + + LNPVW+E L + V      + LEV D++    D  +G
Sbjct: 22  IDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLG 81

Query: 172 EAEIDIQPLL 181
             EI++  L+
Sbjct: 82  SVEINVSDLI 91

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 95  LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVP---QEY 151
           L++++++  NL  +     DPY  + L Q  V  T     LNP W EE +   P     +
Sbjct: 2   LRLRILEAKNLPSKGT--RDPYCTVSLDQVEVARTKTVEKLNPFWGEEFVFDDPPPDVTF 59

Query: 152 GPVKLEVFDHDTFSADDIMGEAEIDIQPL 180
             +     D  +   D ++G+  +    L
Sbjct: 60  FTLSFYNKDKRSKDRDIVIGKVALSKLDL 88

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 112 SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDH 161
           S+D Y V + G + V+T  V+ + NP WNE+    V      + + VFD+
Sbjct: 23  STDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDN 72

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 9/72 (12%)

Query: 95  LKVKVVKGINLAIRDMMSS-DPYVVLRL-GQQTVQTTIVKSNLNPVWNEELMLSVPQEYG 152
           +++ V+    LA RD+    DP+ V+ + G QT  T + K  L+P WNE   L+V    G
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTV----G 57

Query: 153 P---VKLEVFDH 161
           P   + ++VFD 
Sbjct: 58  PSSIITIQVFDQ 69

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVVLRL----GQQTVQTTIVK-SNLNPVWNEELMLS 146
             L V +++ +NLA  D    SDP+V L L    G+++   T VK   LNP +NEE    
Sbjct: 13  RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72

Query: 147 VPQEYGPVK---LEVFDHDTFSADDIMGEAEIDIQ 178
           +       K   + V+D D   ++D +G  ++ I 
Sbjct: 73  IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGIN 107

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 95  LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ---- 149
           L V+VV   +L  +D   SS  YV L    Q  +T     +LNPVWNE+L+ +V      
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61

Query: 150 EYGPVKLEVFDHDTFS 165
               +++ V+ +D  S
Sbjct: 62  SNLVLEVYVY-NDRRS 76

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 21/97 (21%)

Query: 104 NLAIRDMMS-SDPYVVLRLGQQTV-------QTTIVKSNLNPVWNEELMLSVPQEYG--- 152
           NL  +D++S SDP+VV+ +            +T ++K+NLNP +      +   +Y    
Sbjct: 11  NLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVT----TFTVDYYFEE 66

Query: 153 --PVKLEVFDHDTFSAD----DIMGEAEIDIQPLLTS 183
              ++ EV+D D+ S D    D +GEAE  +  +++S
Sbjct: 67  VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSS 103

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 32/111 (28%), Positives = 43/111 (38%), Gaps = 28/111 (25%)

Query: 87  GMVEFIGL-------LKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKS 133
           G +EF  L       L   +++   L   D    SDPYV L L         ++T  V  
Sbjct: 2   GTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK 61

Query: 134 NLNPVWNEELMLSVPQEYG---------PVKLEVFDHDTFSADDIMGEAEI 175
             NP +NE L       YG          ++L V D D F  +D +GE  I
Sbjct: 62  TRNPEFNETL-----TYYGITEEDIQRKTLRLLVLDEDRFG-NDFLGETRI 106

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 12/99 (12%)

Query: 97  VKVVKGINL-AIRDMMSSDPYVVL---RLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYG 152
           +++V+  NL A      SDPYV L      ++  +T  +   LNP W+EE  L VP    
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-E 63

Query: 153 PVKLE--VFDHDTFSADDIMGEAEIDIQPLLTSALAFGD 189
           P+ +   V+D       D+ G A + + P       FGD
Sbjct: 64  PLWISATVWDRSFVGKHDLCGRASLKLDPKR-----FGD 97

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 8/87 (9%)

Query: 95  LKVKVVKGINLAIR--DMMSSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ 149
           L V ++K  NL  R  D+   DP+V + L    ++++Q+ + +   NP ++E  +  V  
Sbjct: 16  LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSF 75

Query: 150 EYGP---VKLEVFDHDTFSADDIMGEA 173
           +      ++L V+D D FS   I+G  
Sbjct: 76  KELQRRTLRLSVYDVDRFSRHCIIGHV 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT-----VQTTIVKSNLNPVWNEELMLS 146
           G L V +++  NL   D+   SDPYV + L Q        +TTI K  LNP +NE     
Sbjct: 15  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74

Query: 147 VPQEY---GPVKLEVFDHDTFSADDIMGE 172
           VP E      + + V D+D    +D +G+
Sbjct: 75  VPFEQIQKVHLIVTVLDYDRIGKNDPIGK 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 23/74 (31%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 108 RDMMSSDPYVVLRLGQQTV-QTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSA 166
           R +++SDPYV + + Q T+ +T ++K++  P+W+E+  +S+   +  ++ +V D D F A
Sbjct: 72  RKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGA 131

Query: 167 DDIMGEAEIDIQPL 180
             I+G A+I ++ +
Sbjct: 132 -QIIGTAKIPVRDI 144

Length = 868

>gnl|CDD|175983 cd04016, C2_Tollip, C2 domain present in Toll-interacting protein (Tollip)

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 92  IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQT-TIVKSNLNPVWNEELMLSVPQE 150
           I +++ K+VK  N  +  M   DPY  +R+G    +T T      NP WN+ +  ++P+ 
Sbjct: 6   ITVVQAKLVK--NYGLTRM---DPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG 60

Query: 151 YGPVKLEVFDHDTFSADDIMGEAEIDIQP 179
              + +E+FD   F+ D+ +    I I  
Sbjct: 61  VDSIYIEIFDERAFTMDERIAWTHITIPE 89

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 121

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 111 MSSDPYVVLRLGQQTV-QTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDI 169
           ++SDPY  + L    V +T +++++ NPVWNE   +        V+  V D+D   A  I
Sbjct: 56  ITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLI 115

Query: 170 MGEAEIDIQPLLT 182
            G A I ++ LL+
Sbjct: 116 -GRAYIPVEDLLS 127

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 10/93 (10%)

Query: 93  GLLKVKVVKGINLAIRD--MMSSDPYVVLRL----GQQTVQTTIVKSN-LNPVWNEELML 145
             L V V +  NLA  D     S+PYV   L     +Q+ + T +K N  NPV+NE L  
Sbjct: 15  QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKY 74

Query: 146 SVPQ---EYGPVKLEVFDHDTFSADDIMGEAEI 175
           S+     E   ++L V+ +D F  +  +GE EI
Sbjct: 75  SISHSQLETRTLQLSVWHYDRFGRNTFLGEVEI 107

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 20/106 (18%)

Query: 95  LKVKVVKGINLAIRDMMSSDPYVVLRLG----QQTVQTTIVKSNLNPVWNEELMLSVPQE 150
           L V+V++  +LA++   + DP+  + L       T +T + K   NP ++E     +   
Sbjct: 1   LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIG 60

Query: 151 YGP----------------VKLEVFDHDTFSADDIMGEAEIDIQPL 180
           +                  +++E++     S DD +GE  I +Q L
Sbjct: 61  FSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGL 106

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 112 SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ------EYGPVKLEVFDHDTFS 165
           ++D YV+++LG++   T++ +   +PVW EE    +P           ++L V   +   
Sbjct: 19  TNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG 78

Query: 166 ADDIMGEAEIDI 177
            D  +G+  I +
Sbjct: 79  LDKFLGQVSIPL 90

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 15/90 (16%)

Query: 95  LKVKVVKGINLAIRDMMSSDP------YVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSV 147
           L+V V++      +D++ SD       +V  +LG Q ++T   ++ N NP WNEELM   
Sbjct: 2   LRVTVIEA-----QDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVA 56

Query: 148 --PQEYGPVKLEVFDHDTFSADDIMGEAEI 175
             P E   + L V D    + D+ +G A I
Sbjct: 57  AEPFE-DHLILSVEDRVGPNKDEPLGRAVI 85

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 95  LKVKVVKGINLAIRD--MMSSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEEL-MLSVP 148
           L V +++  +L   D    +SDPYV L+L    +  V+T +++   NPV++E      +P
Sbjct: 18  LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIP 77

Query: 149 QEYGP---VKLEVFDHDTFSADDIMGEA 173
                   +   V   D +S DD++GE 
Sbjct: 78  YNQLQDLSLHFAVLSFDRYSRDDVIGEV 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 43.7 bits (103), Expect = 9e-06
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 93  GLLKVKVVKGINLAIRDMMS-SDPYVVLRL--GQQ---TVQTTIVKSNLNPVWNEELMLS 146
           G L V +++   L   DM   SDP+V ++L  G +   T +T+ ++  ++P +NE     
Sbjct: 14  GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK 73

Query: 147 VPQEY---GPVKLEVFDHDTFSADDIMGE 172
           VPQE      +   V+ H+  S++D +G 
Sbjct: 74  VPQEELENVSLVFTVYGHNVKSSNDFIGR 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 98  KVVKGINLAIRDMM--SSDPYVVLRLGQ--QTVQTTIVKSNLNPVWNEELMLSVPQEYGP 153
            +VK I          SS+PY VL + +  Q  Q++  K+  NP W+E  +  +      
Sbjct: 1   LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKE 60

Query: 154 VKLEVFDHDTFSADDIMGEAEI 175
           +  EV+D+   S    +G A +
Sbjct: 61  LLFEVYDNGKKSDSKFLGLAIV 82

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 95  LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPV 154
           L V+VVK   L      S+DP V ++LG     T  ++   NP WN+    S  +  G  
Sbjct: 2   LYVRVVKARGLPA---NSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGST 58

Query: 155 KLEVFDHD-TFSADDIMGEAEIDIQ 178
            LEV   D   + DD +G    D+ 
Sbjct: 59  -LEVSVWDKDKAKDDFLGGVCFDLS 82

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 14/92 (15%)

Query: 97  VKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIV--KSNLNPVWNEELMLSVP-----Q 149
           +K V         M     Y V+ +     Q+T V      NP WNE L   +      Q
Sbjct: 12  LKNVNLF----GKM---KVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQ 64

Query: 150 EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLL 181
               + +EV+       D ++GE  + ++ LL
Sbjct: 65  GRLALTIEVYCERPSLGDKLIGEVRVPLKDLL 96

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176052 cd08407, C2B_Synaptotagmin-13, C2 domain second repeat present in Synaptotagmin 13

 Score = 41.1 bits (96), Expect = 9e-05
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 95  LKVKVVKGINL---AIRDMMSSDPYVVLRLGQQTV-----QTTIVKSNLNPVWNEELMLS 146
           L V V+K  NL    ++ ++  D  V + L  Q       QT   K  +NPVWNE +M  
Sbjct: 17  LLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFE 76

Query: 147 VPQEY---GPVKLEVFDHDTFSADDIMGEAEIDIQ 178
           +P E      V+LEV + D+      +G   + + 
Sbjct: 77  LPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLH 111

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 13/105 (12%)

Query: 91  FIGLLKVKVVKGINL-----AIRDMMSS------DPYVVLRLGQQTV-QTTIVKSNLNPV 138
           F G LK+K+ + ++L     + R  +        DPYV + +    + +T+      +PV
Sbjct: 2   FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPV 61

Query: 139 WNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 183
           WNEE    V      ++L VF       DD +    I  + L+  
Sbjct: 62  WNEEFTTEV-HNGRNLELTVFHDAAIGPDDFVANCTISFEDLIQR 105

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 95  LKVKVVKGINLAIRDMMSS--DPYVVLRLGQQTV-QTTIVKSNLNPVWNEELMLSVPQEY 151
           LK+K+ +  NL  R   +   D Y  + L Q+ V +T  V+ +L P + E+    +P+ +
Sbjct: 2   LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTF 61

Query: 152 GPVKLEVFDHDTFSADDIMGEAEI 175
             +   ++D D    D ++G+  I
Sbjct: 62  RHLSFYIYDRDVLRRDSVIGKVAI 85

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 17/89 (19%)

Query: 95  LKVKVVKGINLAIRDMMSS---DPYVVLRL------GQQTVQTTIVKSN-LNPVWNEELM 144
           L +K++ G  L           DPYV + +           +T +VK+N  NPVWNE   
Sbjct: 4   LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63

Query: 145 LSVPQEYGP----VKLEVFDHDTFSADDI 169
             V     P    ++  V+D D+   D +
Sbjct: 64  FDV---TVPELAFLRFVVYDEDSGDDDFL 89

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 12/90 (13%)

Query: 93  GLLKVKVVKGI-NL-AIRDMMSSDPYV---VLRLGQQTV--QTTIVKSNLNPVWNEELML 145
           G L V  VK   NL A++   +SD +V   +L    +    +T +VK ++NPVWN   + 
Sbjct: 27  GELHV-WVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVY 85

Query: 146 S--VPQEYGPVKLE--VFDHDTFSADDIMG 171
               P++     LE  V+DHD  S++D +G
Sbjct: 86  DGVSPEDLSQACLELTVWDHDKLSSNDFLG 115

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 92  IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQ 149
           IG ++V V K  +L        SDPY  + +       TI   S LNP+WNE L + V  
Sbjct: 710 IGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTS 769

Query: 150 EYGPVKLEVFDHDTFSADDIMGEAEIDIQ 178
           +   + LE  D++    D  +GE  I++ 
Sbjct: 770 KNQRLTLECMDYEESGDDRNLGEVNINVS 798

Length = 1227

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 114 DPYVVLRLGQQTVQTTIVKSNLNPVWNEE-LMLSVPQEYGPVKLEVFDHDT 163
            PYV L +G+ T ++ + +   NPVW E    L    E   +++EV D  T
Sbjct: 22  SPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT 72

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 77  STNSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVV-LRLGQQTVQTTIVKSNL 135
           S+ S  ++ V   +F G+  + +V        +M   D ++  +  G+QT +T    S  
Sbjct: 38  SSGSVSQRAVSAEDFSGIALLTLVG------AEMKFKDKWLACVSFGEQTFRTETSDSTD 91

Query: 136 NPVWNEELMLSVPQEYGPV-KLEVFDHDTFSADDIMGEAEIDIQPLLTS 183
            PVWN E  L + +    + ++ VF+ +  S + ++G  E+D+   +T 
Sbjct: 92  KPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQ 140

Length = 644

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 9/82 (10%)

Query: 104 NLAIRDMMSSDPYVVLRL----GQQTVQTT-IVKSNLNPVWNEEL---MLSVPQEYGPV- 154
           NL + D    DPYV   L     + T + T +V+   NP +NE L    L V      V 
Sbjct: 24  NLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVL 83

Query: 155 KLEVFDHDTFSADDIMGEAEID 176
           ++ V+ HD+   ++ +G   I 
Sbjct: 84  QVSVWSHDSLVENEFLGGVCIP 105

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 128 TTIVKSNLNPVWNEELMLSVPQEYGPV-KLEVFDHDTFSADDIMGEAEIDIQ 178
           T +    LNPVWNE     V         L+++DHD    DD +G   I ++
Sbjct: 93  TEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLK 140

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 95  LKVKVVKGINLAIRDMM-SSDPYVVLR-LGQQTV----QTTIVKSNLNPVWNEELMLSVP 148
           L V V K  NL   D     DPYV L  L  ++     +T++ K NLNPV++E     V 
Sbjct: 18  LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77

Query: 149 QEYGPVK-LEVF---DHDTFSAD-DIMGEAEIDIQPLLTS 183
            E    + L+V         S +  ++G+  ID+  L  S
Sbjct: 78  LEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLS 117

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	100.0
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.97
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.93
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.9
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.89
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.89
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.88
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.88
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.88
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.87
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.87
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.87
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.87
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.87
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.86
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.86
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.86
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.86
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.86
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.86
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.85
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.85
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.85
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.85
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.85
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.84
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.84
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.84
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.84
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.84
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.84
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.84
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.83
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.83
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.83
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.83
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.83
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.83
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.83
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.83
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.82
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.82
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.82
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.82
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.82
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.82
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.82
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.81
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.81
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.81
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.8
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.8
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.8
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.8
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.8
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.8
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.8
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.8
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.8
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.79
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.79
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.79
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.79
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.79
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.79
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.78
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.78
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.78
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.78
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.78
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.78
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.77
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.77
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.77
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.76
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.76
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.76
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.75
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.75
PLN03008	868	Phospholipase D delta	99.75
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.74
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.73
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.73
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.73
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.73
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.73
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.73
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.72
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.72
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.71
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.71
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.71
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.68
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.67
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.62
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.6
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.57
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.54
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.54
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.47
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.46
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.44
PLN02270	808	phospholipase D alpha	99.4
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	99.38
PLN02223	537	phosphoinositide phospholipase C	99.37
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.31
PLN02952	599	phosphoinositide phospholipase C	99.28
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.26
KOG0703	287	consensus Predicted GTPase-activating protein [Sig	99.25
KOG0169	746	consensus Phosphoinositide-specific phospholipase	99.24
PLN02230	598	phosphoinositide phospholipase C 4	99.24
PLN02222	581	phosphoinositide phospholipase C 2	99.21
PLN02228	567	Phosphoinositide phospholipase C	99.18
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.12
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.05
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	99.0
smart00105	112	ArfGap Putative GTP-ase activating proteins for th	98.97
PLN02352	758	phospholipase D epsilon	98.94
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.93
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.9
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.9
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.81
PF01412	116	ArfGap: Putative GTPase activating protein for Arf	98.68
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.63
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.58
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.58
PLN03119	648	putative ADP-ribosylation factor GTPase-activating	98.54
PLN03131	705	hypothetical protein; Provisional	98.44
PLN02964	644	phosphatidylserine decarboxylase	98.38
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.32
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	98.3
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	98.26
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.08
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.75
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.71
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.46
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.18
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.02
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	96.96
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.91
KOG1452	442	consensus Predicted Rho GTPase-activating protein	96.91
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	96.88
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	96.88
PF15627	156	CEP76-C2: CEP76 C2 domain	96.76
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.48
COG5347	319	GTPase-activating protein that regulates ARFs (ADP	96.26
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	96.17
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	96.02
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	95.92
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	95.88
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	95.57
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	95.56
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	94.99
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	94.12
PF07162	168	B9-C2: Ciliary basal body-associated, B9 protein;	93.92
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	93.67
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	93.43
KOG1327	529	consensus Copine [Signal transduction mechanisms]	93.41
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	93.31
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	90.1
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	90.03
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	88.59
KOG2419	975	consensus Phosphatidylserine decarboxylase [Lipid	88.58
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	88.47
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	87.23
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	85.08

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=100.00  E-value=2e-32  Score=208.90  Aligned_cols=161  Identities=51%  Similarity=0.760  Sum_probs=152.3

Q ss_pred             ceeeeEEEEEEEEeecCCCCCC-CCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCC
Q 025708           89 VEFIGLLKVKVVKGINLAIRDM-MSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSAD  167 (249)
Q Consensus        89 ~~~~g~L~V~v~~a~~L~~~~~-~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d  167 (249)
                      ..+.|.|+|.|++|.+|..+|. +++||||++.+++++.+|+++.+++||+|||.|+|.+.+....|+++|||+|++++|
T Consensus         2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~d   81 (168)
T KOG1030|consen    2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSD   81 (168)
T ss_pred             CccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcc
Confidence            3578999999999999999999 699999999999999999999999999999999999999889999999999999999


Q ss_pred             CeeEEEEEechhhhhhhhhcC-CCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEe
Q 025708          168 DIMGEAEIDIQPLLTSALAFG-DPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP  246 (249)
Q Consensus       168 ~~iG~~~i~l~~l~~~~~~~~-~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~  246 (249)
                      |+||++.|+|..++....... ......+..+..|++..+++++.++.+.+.+|++.|++.+++++.+.|+++++++|++
T Consensus        82 D~mG~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v~~s~dn~~~~es~i~~s~~~~~q~~~l~l~~ve~g~~e~~~~~~~  161 (168)
T KOG1030|consen   82 DFMGEATIPLKPLLEAQKMDYLKLELLTGTAIGKVLLSRDNCLNEESAIIRSFGKIVQDYILRLQNVECGELEIQLEWIK  161 (168)
T ss_pred             cccceeeeccHHHHHHhhhhccccccCCCcEeeEEEeccccccccceEEEecCChhhhhhccchhhcCcceeeeeeeEec
Confidence            999999999999998887774 4567888999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 025708          247 LDQ  249 (249)
Q Consensus       247 ~~~  249 (249)
                      .+|
T Consensus       162 ~~~  164 (168)
T KOG1030|consen  162 LPG  164 (168)
T ss_pred             Ccc
Confidence            865

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.97  E-value=1.4e-29  Score=194.61  Aligned_cols=144  Identities=60%  Similarity=0.869  Sum_probs=135.6

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEE
Q 025708           93 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE  172 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~  172 (249)
                      |.|+|+|++|++|+..+...+||||++.++.++.+|++++++.||.|||+|.|.+......|.|+|||++.++.|++||.
T Consensus         2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~   81 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGE   81 (145)
T ss_pred             eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEE
Confidence            78999999999999887778899999999999999999999999999999999998877889999999999999999999


Q ss_pred             EEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCc
Q 025708          173 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESG  236 (249)
Q Consensus       173 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G  236 (249)
                      +.+++.++.............++..+..|+|..+++|++++.+.+.+|++.|+++|+|+++++|
T Consensus        82 a~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~g  145 (145)
T cd04038          82 AEIDLEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLASESHITWKDGKIVQDLVLKLRNVESG  145 (145)
T ss_pred             EEEEHHHhhhhhhhhccccCCCCEEEEEEecCCCceEeccceEEEECCEEEEEEEEEecccccC
Confidence            9999999998877665566788999999999999999999999999999999999999999987

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.93  E-value=1.3e-24  Score=162.03  Aligned_cols=118  Identities=21%  Similarity=0.461  Sum_probs=99.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecC-cCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeE
Q 025708           93 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG  171 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~-t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG  171 (249)
                      |+|.|+|++|++|+..+.+.+||||++.++.++++|+++.+ +.||+|||+|.|.+......|.|+|||++.+++|++||
T Consensus         2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG   81 (121)
T cd04016           2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIA   81 (121)
T ss_pred             cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEE
Confidence            79999999999998777569999999999999999999876 79999999999999875578999999999999999999


Q ss_pred             EEEEechh-hhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708          172 EAEIDIQP-LLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  244 (249)
Q Consensus       172 ~~~i~l~~-l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  244 (249)
                      ++.++|.. +.            .+...+.||++...                      -.....|+|+|.|.|
T Consensus        82 ~~~i~l~~~~~------------~g~~~~~W~~L~~~----------------------~~~~~~g~i~l~l~y  121 (121)
T cd04016          82 WTHITIPESVF------------NGETLDDWYSLSGK----------------------QGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEECchhcc------------CCCCccccEeCcCc----------------------cCCCCceEEEEEEeC
Confidence            99999964 53            23347899986442                      011357999999976

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.90  E-value=1.2e-22  Score=153.20  Aligned_cols=102  Identities=23%  Similarity=0.518  Sum_probs=89.0

Q ss_pred             EEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC------CCccEEEEEEecCCCCCC
Q 025708           95 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ------EYGPVKLEVFDHDTFSAD  167 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~------~~~~L~i~V~d~~~~~~d  167 (249)
                      ++|+|++|+||+..+.. .+||||++.++..+++|++++++.||+|||+|.|.+..      ....|.|+|||++.+++|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            57999999999988775 89999999999999999999999999999999999876      356899999999999999


Q ss_pred             CeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          168 DIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       168 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      ++||++.++|.++...          .+.....||+|..
T Consensus        81 ~~iG~~~i~l~~l~~~----------~~~~~~~W~~L~~  109 (126)
T cd08682          81 KFLGQVSIPLNDLDED----------KGRRRTRWFKLES  109 (126)
T ss_pred             ceeEEEEEEHHHhhcc----------CCCcccEEEECcC
Confidence            9999999999998531          2334678999654

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.89  E-value=8.8e-22  Score=147.35  Aligned_cols=119  Identities=34%  Similarity=0.533  Sum_probs=100.3

Q ss_pred             EEEEEEEEeecCCCCCCC-CCCcEEEEEECC-eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeE
Q 025708           94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG  171 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG  171 (249)
                      .|+|+|++|++|+..+.. .+||||++.+++ ..++|++++++.||.|||.|.|.+......|.|+|||++.+++|++||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence            389999999999988875 899999999987 568999999999999999999998775678999999999999999999


Q ss_pred             EEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEe
Q 025708          172 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP  246 (249)
Q Consensus       172 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~  246 (249)
                      .+.++|.++..            +.....|++|.+..                      .....|+|+|.+++.|
T Consensus        81 ~~~~~l~~l~~------------~~~~~~~~~L~~~~----------------------~~~~~G~l~l~~~~~~  121 (121)
T cd04042          81 SAFVDLSTLEL------------NKPTEVKLKLEDPN----------------------SDEDLGYISLVVTLTP  121 (121)
T ss_pred             EEEEEHHHcCC------------CCCeEEEEECCCCC----------------------CccCceEEEEEEEECC
Confidence            99999999843            33466788754420                      1235799999999875

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.89  E-value=9.7e-22  Score=145.97  Aligned_cols=113  Identities=32%  Similarity=0.498  Sum_probs=97.2

Q ss_pred             EEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCC-CccEEEEEEecCCCCCCCeeE
Q 025708           94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEVFDHDTFSADDIMG  171 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~-~~~L~i~V~d~~~~~~d~~iG  171 (249)
                      +|+|+|++|++|+..+.. .+||||++++++.+.+|++++++.||.|||+|.|.+... ...|.|+|||++.+++|++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            478999999999998865 889999999999999999999999999999999998773 678999999999999999999


Q ss_pred             EEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEE
Q 025708          172 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM  245 (249)
Q Consensus       172 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~  245 (249)
                      ++.++|.++..            +.....|++                          |... +|+|+++++|.
T Consensus        81 ~~~~~l~~l~~------------~~~~~~w~~--------------------------L~~~-~G~~~~~~~~~  115 (116)
T cd08376          81 RCEIDLSALPR------------EQTHSLELE--------------------------LEDG-EGSLLLLLTLT  115 (116)
T ss_pred             EEEEeHHHCCC------------CCceEEEEE--------------------------ccCC-CcEEEEEEEec
Confidence            99999999843            234556665                          4432 69999998874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.88  E-value=9.9e-22  Score=149.87  Aligned_cols=123  Identities=34%  Similarity=0.532  Sum_probs=103.0

Q ss_pred             ceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCC
Q 025708           89 VEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSA  166 (249)
Q Consensus        89 ~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~  166 (249)
                      ....|.|+|+|++|++|+..+.. .+||||++.++...++|++++++.||.|||+|.|.+.. ....|.|+|||++.++.
T Consensus        11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~   90 (136)
T cd08375          11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP   90 (136)
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence            34579999999999999988765 89999999999999999999999999999999999976 44679999999999999


Q ss_pred             CCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708          167 DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  244 (249)
Q Consensus       167 d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  244 (249)
                      |++||++.++|.++.......       ...+..|                          +.+.+...|+|+|++.+
T Consensus        91 d~~lG~~~i~l~~l~~~~~~~-------~~~~~~~--------------------------~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          91 DDFLGRTEIRVADILKETKES-------KGPITKR--------------------------LLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CCeeEEEEEEHHHhccccccC-------CCcEEEE--------------------------eccccccceeEEEEEEe
Confidence            999999999999997532211       1122333                          44677889999999986

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.88  E-value=5.1e-22  Score=148.40  Aligned_cols=113  Identities=39%  Similarity=0.733  Sum_probs=98.0

Q ss_pred             eEEEEEEEEeecCCCCCC-------CCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCC
Q 025708           93 GLLKVKVVKGINLAIRDM-------MSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTF  164 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~-------~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~  164 (249)
                      |.|+|+|++|++|+..+.       +.+||||++.+++..++|++++++.+|.|+|.|.|.+.. ....|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            679999999999998764       368999999999999999999999999999999999875 567899999999988


Q ss_pred             CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708          165 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  244 (249)
Q Consensus       165 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  244 (249)
                       ++++||.+.++|.++..+            ...+.||+                          |.....|+|+|+++|
T Consensus        81 -~~~~iG~~~i~l~~l~~~------------~~~~~w~~--------------------------L~~~~~G~~~~~~~~  121 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKK------------GFIDEWLP--------------------------LEDVKSGRLHLKLEW  121 (121)
T ss_pred             -CCCcEEEEEEEHHHhccc------------CccceEEE--------------------------CcCCCCceEEEEEeC
Confidence             889999999999998532            23567776                          555578999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.88  E-value=3e-22  Score=149.20  Aligned_cols=115  Identities=33%  Similarity=0.582  Sum_probs=96.6

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeec-CcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCe
Q 025708           93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDI  169 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~-~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~  169 (249)
                      |.|+|+|++|++|+..+.. .+||||++.++..+.+|+++. ++.||.|||.|.|.+.. ....|.|+|||++..+ |++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            6899999999999988875 899999999999889999875 47999999999999986 4578999999999876 899


Q ss_pred             eEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708          170 MGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  244 (249)
Q Consensus       170 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  244 (249)
                      ||++.+++.++..+.            ....|+++..                        .+..+|+|+|+|+|
T Consensus        80 iG~~~~~l~~~~~~~------------~~~~w~~L~~------------------------~~~~~G~i~l~l~f  118 (118)
T cd08681          80 IGDTEVDLSPALKEG------------EFDDWYELTL------------------------KGRYAGEVYLELTF  118 (118)
T ss_pred             eEEEEEecHHHhhcC------------CCCCcEEecc------------------------CCcEeeEEEEEEEC
Confidence            999999999985432            2467887432                        23357999999886

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.87  E-value=2.3e-21  Score=146.38  Aligned_cols=124  Identities=31%  Similarity=0.584  Sum_probs=102.6

Q ss_pred             eEEEEEEEEeecCCCCCC--C-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCC
Q 025708           93 GLLKVKVVKGINLAIRDM--M-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADD  168 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~--~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~  168 (249)
                      |.|+|+|++|++|+..+.  . .+||||++.++..+++|++++++.+|.|||.|.|.+.. ....|.|+|||++.++.++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            689999999999998886  4 89999999999999999999999999999999999986 5678999999999988999


Q ss_pred             eeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708          169 IMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  244 (249)
Q Consensus       169 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  244 (249)
                      +||++.++|.++....         .......||++.+..-                   ......+|+|+|++.|
T Consensus        81 ~lG~~~i~l~~~~~~~---------~~~~~~~w~~L~~~~~-------------------~~~~~~~G~i~l~~~~  128 (128)
T cd04024          81 YLGEFDIALEEVFADG---------KTGQSDKWITLKSTRP-------------------GKTSVVSGEIHLQFSW  128 (128)
T ss_pred             cceEEEEEHHHhhccc---------ccCccceeEEccCccc-------------------CccccccceEEEEEEC
Confidence            9999999999986421         1123568988654200                   0123458999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.87  E-value=6.7e-22  Score=145.50  Aligned_cols=95  Identities=22%  Similarity=0.374  Sum_probs=84.8

Q ss_pred             cccccceeeeEEEEEEEEeecCCCCCCCCCCcEEEEEECC----eEEeeeeecCcCCceeeeeEEEEeeC---CCccEEE
Q 025708           84 KDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKL  156 (249)
Q Consensus        84 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i  156 (249)
                      .++.|....+.|+|+|++|++|+ .+ +.+||||++++..    .+++|++.++|+||+|||+|.|.++.   ....|.|
T Consensus         5 fsL~Y~~~~~~L~V~vikA~~L~-~~-g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~   82 (118)
T cd08677           5 YSLSYDKQKAELHVNILEAENIS-VD-AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTL   82 (118)
T ss_pred             EEEEEcCcCCEEEEEEEEecCCC-CC-CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEE
Confidence            35778888999999999999998 32 3689999999953    46899999999999999999999877   4578999


Q ss_pred             EEEecCCCCCCCeeEEEEEechhh
Q 025708          157 EVFDHDTFSADDIMGEAEIDIQPL  180 (249)
Q Consensus       157 ~V~d~~~~~~d~~iG~~~i~l~~l  180 (249)
                      +|||+|+++++++||++.++++++
T Consensus        83 ~V~d~Drfs~~d~IG~v~l~l~~~  106 (118)
T cd08677          83 TLRCCDRFSRHSTLGELRLKLADV  106 (118)
T ss_pred             EEEeCCCCCCCceEEEEEEccccc
Confidence            999999999999999999999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.87  E-value=3e-21  Score=149.45  Aligned_cols=106  Identities=25%  Similarity=0.369  Sum_probs=91.0

Q ss_pred             EEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecC-cCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCee
Q 025708           94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIM  170 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~-t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~i  170 (249)
                      .|+|+|++|++|+..+.. .+||||++.++++..+|+++.+ +.||+|||.|.|.+.. ....|.|+|||++..+++++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            389999999999998876 8999999999999999999976 6999999999999876 346899999999998899999


Q ss_pred             EEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          171 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       171 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                      |++.++|.++..+.        ..+.....||+|.+.
T Consensus        81 G~v~i~L~~l~~~~--------~~~~~~~~W~~L~~~  109 (150)
T cd04019          81 GRAVIPLNDIERRV--------DDRPVPSRWFSLERP  109 (150)
T ss_pred             EEEEEEHHHCcccC--------CCCccCCceEECcCC
Confidence            99999999985431        123457899997664

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.87  E-value=3.4e-21  Score=144.48  Aligned_cols=101  Identities=25%  Similarity=0.377  Sum_probs=89.0

Q ss_pred             EEEEEEEEeec---CCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCC----
Q 025708           94 LLKVKVVKGIN---LAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFS----  165 (249)
Q Consensus        94 ~L~V~v~~a~~---L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~----  165 (249)
                      .|+|+|++|+|   |+..+.. .+||||++.++.++.+|++++++.||+|||+|.|.+......|.|+|||++.++    
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            38999999999   7777765 899999999999999999999999999999999999876678999999999874    


Q ss_pred             --CCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          166 --ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       166 --~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                        .|++||++.++|..+.            .+.....||+|.+
T Consensus        81 ~~~dd~lG~~~i~l~~l~------------~~~~~~~~~~L~~  111 (126)
T cd08379          81 VQPDVLIGKVRIRLSTLE------------DDRVYAHSYPLLS  111 (126)
T ss_pred             CCCCceEEEEEEEHHHcc------------CCCEEeeEEEeEe
Confidence              8999999999999984            3446788998543

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.87  E-value=4.4e-21  Score=144.81  Aligned_cols=120  Identities=24%  Similarity=0.342  Sum_probs=98.1

Q ss_pred             EEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCC----CccEEEEEEecCCCC-CC
Q 025708           94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE----YGPVKLEVFDHDTFS-AD  167 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~----~~~L~i~V~d~~~~~-~d  167 (249)
                      +|+|+|++|++|+..+.. .+||||++.+++++++|++++++.||.|||.|.|.+...    ...|.|+|||++.++ .+
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            489999999999988865 899999999999999999999999999999999998752    357999999999886 89


Q ss_pred             CeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEE
Q 025708          168 DIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM  245 (249)
Q Consensus       168 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~  245 (249)
                      ++||++.+++.++..           .+.....||+|....                     .....+|+|+|++.+-
T Consensus        81 ~~lG~v~i~l~~l~~-----------~~~~~~~w~~L~~~~---------------------~~~~~~G~l~l~~~~~  126 (127)
T cd04022          81 SFLGRVRISGTSFVP-----------PSEAVVQRYPLEKRG---------------------LFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CeeeEEEEcHHHcCC-----------CCCccceEeEeeeCC---------------------CCCCccEEEEEEEEEc
Confidence            999999999999852           223467898854320                     1223578888888763

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.86  E-value=8.3e-21  Score=143.09  Aligned_cols=120  Identities=24%  Similarity=0.376  Sum_probs=97.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEECC--eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEE
Q 025708           95 LKVKVVKGINLAIRDMMSSDPYVVLRLGQ--QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE  172 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~--~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~  172 (249)
                      |.|+|++|++|+. ..+.+||||+++++.  .+++|++++++.||.|||.|.|.+......|.|+|||++..++|++||+
T Consensus         1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~   79 (126)
T cd08678           1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL   79 (126)
T ss_pred             CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence            6799999999988 445899999999973  5689999999999999999999997656789999999999989999999


Q ss_pred             EEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEeC
Q 025708          173 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPL  247 (249)
Q Consensus       173 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~  247 (249)
                      +.++|.++....            ....||++.....                    -.....|+|++++.|.+-
T Consensus        80 ~~i~l~~l~~~~------------~~~~~~~L~~~~~--------------------~~~~~~G~l~l~~~~~~~  122 (126)
T cd08678          80 AIVPFDELRKNP------------SGRQIFPLQGRPY--------------------EGDSVSGSITVEFLFMEP  122 (126)
T ss_pred             EEEeHHHhccCC------------ceeEEEEecCCCC--------------------CCCCcceEEEEEEEEecc
Confidence            999999995432            3457888543210                    012357999999999764

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.86  E-value=7e-21  Score=142.05  Aligned_cols=111  Identities=29%  Similarity=0.473  Sum_probs=93.2

Q ss_pred             EEEEEEEeecCCCCCCC-CCCcEEEEEECC---eEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCe
Q 025708           95 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDI  169 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~---~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~  169 (249)
                      |+|+|++|++|+..+.. .+||||++.++.   .+++|++++++.||.|||+|.|.+.. ....|.|+|||++.+ +|++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            78999999999988765 899999999953   56899999999999999999999876 345799999999998 8999


Q ss_pred             eEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708          170 MGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  244 (249)
Q Consensus       170 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  244 (249)
                      ||++.+++.++..            +.....||+                          |....+|+|++++..
T Consensus        81 iG~~~~~l~~l~~------------g~~~~~~~~--------------------------L~~~~~g~l~~~~~~  117 (119)
T cd04036          81 LGTVLFDVSKLKL------------GEKVRVTFS--------------------------LNPQGKEELEVEFLL  117 (119)
T ss_pred             cEEEEEEHHHCCC------------CCcEEEEEE--------------------------CCCCCCceEEEEEEe
Confidence            9999999999843            234556665                          566668888888865

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.86  E-value=5.5e-21  Score=143.42  Aligned_cols=120  Identities=31%  Similarity=0.541  Sum_probs=98.5

Q ss_pred             eeEEEEEEEEeecCCCCCCC--CCCcEEEEEECC--eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCC
Q 025708           92 IGLLKVKVVKGINLAIRDMM--SSDPYVVLRLGQ--QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSAD  167 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l~~--~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d  167 (249)
                      .|.|+|+|++|++|+..+..  .+||||++.++.  ...+|++++++.+|.|||.|.|.+......|.|+|||++..+.|
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d   80 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD   80 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence            37899999999999965532  689999999987  67999999999999999999999886578999999999998899


Q ss_pred             CeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEe
Q 025708          168 DIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP  246 (249)
Q Consensus       168 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~  246 (249)
                      ++||.+.++|.++.....            ...|..                       .+...+...|+|+++|+|.|
T Consensus        81 ~~iG~~~~~l~~l~~~~~------------~~~~~~-----------------------~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          81 KLIGTAEFDLSSLLQNPE------------QENLTK-----------------------NLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             ceeEEEEEEHHHhccCcc------------ccCcch-----------------------hhhcCCccceEEEEEEEeCC
Confidence            999999999999965432            111111                       12234556899999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.86  E-value=9.4e-21  Score=141.73  Aligned_cols=99  Identities=23%  Similarity=0.474  Sum_probs=85.9

Q ss_pred             EEEEEEEeecCCCCCC--CCCCcEEEEEECCe-EEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeE
Q 025708           95 LKVKVVKGINLAIRDM--MSSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG  171 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~--~~~dpyv~v~l~~~-~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG  171 (249)
                      |+|.|++|+||+..+.  +.+||||++.++.. ..+|+++++|.||.|||+|.|.+......|.|.|||++.+++|++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            6899999999998743  37899999999765 57999999999999999999999875679999999999999999999


Q ss_pred             EEEEechhhhhhhhhcCCCCCcCCeeeeeeEecC
Q 025708          172 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD  205 (249)
Q Consensus       172 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~  205 (249)
                      .+.++|+++..            +...+.||++.
T Consensus        82 ~~~i~l~~l~~------------~~~~~~w~~L~  103 (121)
T cd08401          82 KVAIKKEDLHK------------YYGKDTWFPLQ  103 (121)
T ss_pred             EEEEEHHHccC------------CCCcEeeEEEE
Confidence            99999999853            23467898854

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.86  E-value=7.2e-21  Score=142.35  Aligned_cols=117  Identities=27%  Similarity=0.437  Sum_probs=96.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCeeEEE
Q 025708           95 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMGEA  173 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~iG~~  173 (249)
                      |+|+|++|++|+..   .+||||++.++....+|++++++.||+|||+|.|.+.. ....|.|+|||++.. .+++||++
T Consensus         2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~   77 (121)
T cd08378           2 LYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGV   77 (121)
T ss_pred             EEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeE
Confidence            78999999999887   67999999999989999999999999999999999876 567899999999987 78999999


Q ss_pred             EEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708          174 EIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  244 (249)
Q Consensus       174 ~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  244 (249)
                      .++|.++.....       ..+.....||++.+..                      ....+|+|+|.|.|
T Consensus        78 ~i~l~~l~~~~~-------~~~~~~~~W~~L~~~~----------------------~~~~~G~i~l~~~~  119 (121)
T cd08378          78 CFDLSEVPTRVP-------PDSPLAPQWYRLEDKK----------------------GGRVGGELMLAVWF  119 (121)
T ss_pred             EEEhHhCcCCCC-------CCCCCCcceEEccCCC----------------------CCccceEEEEEEEe
Confidence            999999854321       1233467899865531                      11246888888876

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.86  E-value=1.1e-20  Score=140.63  Aligned_cols=102  Identities=21%  Similarity=0.282  Sum_probs=86.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCcEEEEEE-C----C--eEEeeeeecCcCCceeeeeEEEEeeCC----CccEEEEEEecC
Q 025708           94 LLKVKVVKGINLAIRDMMSSDPYVVLRL-G----Q--QTVQTTIVKSNLNPVWNEELMLSVPQE----YGPVKLEVFDHD  162 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l-~----~--~~~kT~~~~~t~~P~W~e~f~f~v~~~----~~~L~i~V~d~~  162 (249)
                      +|+|.|++|++|+..+.+.+||||++++ +    .  ++++|+++.+++||+|||+|.|.+...    ...|.|.|||++
T Consensus         1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d   80 (120)
T cd08395           1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC   80 (120)
T ss_pred             CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence            4899999999999887668899999998 3    2  346899999999999999999999752    246999999999


Q ss_pred             CCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          163 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       163 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                      ..+++++||++.++|.++..+            .....|++|...
T Consensus        81 ~~~~dd~IG~~~l~l~~~~~~------------~~~~~w~~L~~~  113 (120)
T cd08395          81 FARDDRLVGVTVLQLRDIAQA------------GSCACWLPLGRR  113 (120)
T ss_pred             ccCCCCEEEEEEEEHHHCcCC------------CcEEEEEECcCc
Confidence            888899999999999999533            357789987554

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.85  E-value=2.2e-20  Score=139.21  Aligned_cols=89  Identities=29%  Similarity=0.533  Sum_probs=82.5

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeE
Q 025708           93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG  171 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG  171 (249)
                      |.|.|+|++|++|+..+.. .+||||+++++....+|++++++.||.|+|+|.|.+......|.|+|||++..+++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            6899999999999988875 899999999998889999999999999999999998775678999999999988999999


Q ss_pred             EEEEechhhh
Q 025708          172 EAEIDIQPLL  181 (249)
Q Consensus       172 ~~~i~l~~l~  181 (249)
                      ++.+++.++.
T Consensus        81 ~~~~~l~~~~   90 (119)
T cd08377          81 KVAIPLLSIK   90 (119)
T ss_pred             EEEEEHHHCC
Confidence            9999999884

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.85  E-value=6.1e-21  Score=143.55  Aligned_cols=108  Identities=30%  Similarity=0.364  Sum_probs=92.2

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCC--CCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDM--MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPV  154 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L  154 (249)
                      ++.|....+.|.|.|++|+||+..+.  +.+||||++++..     .++||++++++.||+|||+|.|.+..   ....|
T Consensus         7 sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L   86 (125)
T cd04029           7 SLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTL   86 (125)
T ss_pred             EEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEE
Confidence            46677788999999999999998765  3799999999942     35799999999999999999999865   35679


Q ss_pred             EEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      .|+|||++.++++++||++.++|..+..            ......||+|
T Consensus        87 ~~~V~d~~~~~~~~~lG~~~i~l~~~~~------------~~~~~~w~~l  124 (125)
T cd04029          87 QLSVWHYDRFGRNTFLGEVEIPLDSWNF------------DSQHEECLPL  124 (125)
T ss_pred             EEEEEECCCCCCCcEEEEEEEeCCcccc------------cCCcccEEEC
Confidence            9999999999999999999999999833            2357789885

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.85  E-value=5.7e-21  Score=143.09  Aligned_cols=101  Identities=29%  Similarity=0.438  Sum_probs=86.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEe-eC---CCccEEEEEEecC
Q 025708           92 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSV-PQ---EYGPVKLEVFDHD  162 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v-~~---~~~~L~i~V~d~~  162 (249)
                      .+.|.|.|++|++|+..+.+.+||||++++.+     .+++|++++++.||.|||+|.|.+ +.   ....|.|+|||++
T Consensus        12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d   91 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD   91 (122)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence            68999999999999999833899999999952     468999999999999999999997 32   4578999999999


Q ss_pred             CCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          163 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       163 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      .++++++||++.++|.++...            .....||+|
T Consensus        92 ~~~~~~~lG~~~i~l~~l~~~------------~~~~~W~~L  121 (122)
T cd08381          92 SLVENEFLGGVCIPLKKLDLS------------QETEKWYPL  121 (122)
T ss_pred             CCcCCcEEEEEEEeccccccC------------CCccceEEC
Confidence            999999999999999998532            345788874

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.85  E-value=3.3e-20  Score=139.23  Aligned_cols=101  Identities=31%  Similarity=0.511  Sum_probs=88.7

Q ss_pred             EEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCeeE
Q 025708           94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMG  171 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~iG  171 (249)
                      +|+|+|++|++|+..+.. .+||||+++++....+|++++++.||.|||+|.|.+.. ....|.|+|||++.++.+++||
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG   80 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence            489999999999988875 88999999999989999999999999999999999877 3467999999999999999999


Q ss_pred             EEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          172 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       172 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      .+.++|.++...            .....||.+..
T Consensus        81 ~~~~~l~~l~~~------------~~~~~w~~L~~  103 (123)
T cd04025          81 KVVFSIQTLQQA------------KQEEGWFRLLP  103 (123)
T ss_pred             EEEEEHHHcccC------------CCCCCEEECCC
Confidence            999999998542            23467998655

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.85  E-value=2e-20  Score=142.19  Aligned_cols=125  Identities=33%  Similarity=0.520  Sum_probs=100.0

Q ss_pred             EEEEEEEEeecCCCCCCC-CCCcEEEEEECCe-------EEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCC
Q 025708           94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-------TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFS  165 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~-------~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~  165 (249)
                      .|+|+|++|++|+..+.. .+||||++.+.+.       ..+|++++++.||.|||+|.|.+......|.|+|||++.++
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            389999999999998865 8999999999654       47999999999999999999998775678999999999999


Q ss_pred             CCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEE
Q 025708          166 ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM  245 (249)
Q Consensus       166 ~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~  245 (249)
                      ++++||++.+++.++..+....      .......||+|...                     .-.....|+|+|.+.|+
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~------~~~~~~~~~~l~~~---------------------~~~~~~~G~l~~~~~~~  133 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETPGN------ERRYTFKDYLLRPR---------------------SSKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCccc------cccccchheeeeec---------------------CCCCcceeEEEEEEeeC
Confidence            9999999999999997543211      01246688875421                     00123589999999885

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.84  E-value=2.8e-20  Score=136.26  Aligned_cols=94  Identities=28%  Similarity=0.495  Sum_probs=83.7

Q ss_pred             eEEEEEEEEeecCCCCCCC-----CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEEEecCCCC
Q 025708           93 GLLKVKVVKGINLAIRDMM-----SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTFS  165 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~-----~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V~d~~~~~  165 (249)
                      |+|.|+|++|++|+..+..     .+||||+++++...++|++++++.||+|||.|.|.+..  ....|.|+|||++.++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            7899999999999987631     48999999999989999999999999999999999865  3347999999999999


Q ss_pred             CCCeeEEEEEechhhhhhhhh
Q 025708          166 ADDIMGEAEIDIQPLLTSALA  186 (249)
Q Consensus       166 ~d~~iG~~~i~l~~l~~~~~~  186 (249)
                      +|++||++.++|.+|..+...
T Consensus        81 ~dd~IG~~~l~L~~l~~~~~~  101 (108)
T cd04039          81 FNDYVATGSLSVQELLNAAPQ  101 (108)
T ss_pred             CCcceEEEEEEHHHHHhhCCC
Confidence            999999999999999876543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.84  E-value=7.8e-21  Score=144.75  Aligned_cols=120  Identities=25%  Similarity=0.359  Sum_probs=98.6

Q ss_pred             cccccceeeeEEEEEEEEeecCCCCCC---CCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCc
Q 025708           84 KDVGMVEFIGLLKVKVVKGINLAIRDM---MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYG  152 (249)
Q Consensus        84 ~~~~~~~~~g~L~V~v~~a~~L~~~~~---~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~  152 (249)
                      .++.|....+.|+|.|++|+||+..+.   ..+||||++++..     .++||++++++.||+|||.|.|.++.   ...
T Consensus         6 ~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~   85 (138)
T cd08407           6 LSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAAS   85 (138)
T ss_pred             EEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCcc
Confidence            457788889999999999999999873   2589999999944     24689999999999999999999976   356


Q ss_pred             cEEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEe
Q 025708          153 PVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK  203 (249)
Q Consensus       153 ~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~  203 (249)
                      .|.|+|||++.++++++||++.+++...-.+..++..+....+..++.|-.
T Consensus        86 ~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~p~~~va~WH~  136 (138)
T cd08407          86 SVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDNPRRQIAMWHQ  136 (138)
T ss_pred             EEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhCCCCchhEEEE
Confidence            799999999999999999999999986544444444444456777778865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.84  E-value=1.4e-19  Score=136.34  Aligned_cols=120  Identities=19%  Similarity=0.412  Sum_probs=95.8

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCC-CccEEEEEEecCCCCCCCe
Q 025708           92 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEVFDHDTFSADDI  169 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~-~~~L~i~V~d~~~~~~d~~  169 (249)
                      ...|+|+|++|++|+..+  .+||||++.+++.. .+|++ +++.||.|||.|.|.+... ...|.|.|||++.+++|++
T Consensus         3 ~~~L~V~Vi~A~~L~~~~--~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~   79 (126)
T cd08400           3 VRSLQLNVLEAHKLPVKH--VPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE   79 (126)
T ss_pred             eeEEEEEEEEeeCCCCCC--CCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence            457999999999998754  67999999998754 68887 4689999999999986553 3578999999999999999


Q ss_pred             eEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEe
Q 025708          170 MGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP  246 (249)
Q Consensus       170 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~  246 (249)
                      ||++.++|..+..            +...+.||++.....                    -.....|+|+|+|.|.+
T Consensus        80 iG~v~i~l~~l~~------------~~~~~~W~~L~~~~~--------------------~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          80 IAEVTVQLSKLQN------------GQETDEWYPLSSASP--------------------LKGGEWGSLRIRARYSH  124 (126)
T ss_pred             EEEEEEEHhHccC------------CCcccEeEEcccCCC--------------------CCCCcCcEEEEEEEEEc
Confidence            9999999999843            334678998654200                    02335799999999975

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.84  E-value=4.2e-20  Score=141.80  Aligned_cols=105  Identities=23%  Similarity=0.351  Sum_probs=88.8

Q ss_pred             eeeEEEEEEEEeecCCCCC-C-CCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEE-ecC
Q 025708           91 FIGLLKVKVVKGINLAIRD-M-MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF-DHD  162 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~-~-~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~-d~~  162 (249)
                      ..+.|.|+|++|+||+..+ . +.+||||++++..     .++||+++++++||+|||+|.|.+......|.|+|| |++
T Consensus        27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~  106 (146)
T cd04028          27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG  106 (146)
T ss_pred             CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence            3689999999999999864 3 3789999999933     368999999999999999999999866678999999 688


Q ss_pred             CCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          163 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       163 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                      .++++++||++.|+|+.+-.            +.....||+|.+.
T Consensus       107 ~~~~~~~iG~~~i~L~~l~~------------~~~~~~Wy~L~~~  139 (146)
T cd04028         107 RMDKKVFMGVAQILLDDLDL------------SNLVIGWYKLFPT  139 (146)
T ss_pred             CCCCCceEEEEEEEcccccC------------CCCceeEEecCCc
Confidence            88899999999999999832            2246789987654

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.84  E-value=1.4e-19  Score=137.54  Aligned_cols=117  Identities=27%  Similarity=0.524  Sum_probs=97.8

Q ss_pred             eeeEEEEEEEEeecCCCCCC-----------CCCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEEEE
Q 025708           91 FIGLLKVKVVKGINLAIRDM-----------MSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEV  158 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~~-----------~~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V  158 (249)
                      ..|.|+|+|++|++|+..+.           +.+||||++.++++. .+|++++++.+|.|||+|.|.+.. ...|.|.|
T Consensus         2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v   80 (132)
T cd04014           2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTV   80 (132)
T ss_pred             cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEE
Confidence            46899999999999998775           268999999998765 699999999999999999999974 47899999


Q ss_pred             EecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceE
Q 025708          159 FDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGEL  238 (249)
Q Consensus       159 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i  238 (249)
                      ||++.++.+++||++.++|.++..+          ++.....|++                          |+  +.|+|
T Consensus        81 ~d~~~~~~~~~iG~~~i~l~~l~~~----------~~~~~~~w~~--------------------------L~--~~G~l  122 (132)
T cd04014          81 FHDAAIGPDDFVANCTISFEDLIQR----------GSGSFDLWVD--------------------------LE--PQGKL  122 (132)
T ss_pred             EeCCCCCCCceEEEEEEEhHHhccc----------CCCcccEEEE--------------------------cc--CCcEE
Confidence            9999988999999999999998653          1223456765                          43  57999


Q ss_pred             EEEEEEEe
Q 025708          239 ELELEWMP  246 (249)
Q Consensus       239 ~l~l~~~~  246 (249)
                      +|+++|..
T Consensus       123 ~l~~~~~~  130 (132)
T cd04014         123 HVKIELKG  130 (132)
T ss_pred             EEEEEEec
Confidence            99999863

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.84  E-value=2e-20  Score=140.78  Aligned_cols=108  Identities=29%  Similarity=0.394  Sum_probs=90.9

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCC--CCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDM--MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPV  154 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L  154 (249)
                      ++.|....+.|.|+|++|+||++.+.  +.+||||++++.+     .+++|++++++.||+|||+|.|.+..   ....|
T Consensus         7 sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L   86 (125)
T cd08393           7 ALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVL   86 (125)
T ss_pred             EEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEE
Confidence            35566667899999999999999885  3899999999942     35799999999999999999999865   34689


Q ss_pred             EEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      .|+|||++.++++++||++.++|.++...            .....||+|
T Consensus        87 ~~~V~d~~~~~~~~~iG~~~i~L~~~~~~------------~~~~~W~~L  124 (125)
T cd08393          87 NLSVWHRDSLGRNSFLGEVEVDLGSWDWS------------NTQPTWYPL  124 (125)
T ss_pred             EEEEEeCCCCCCCcEeEEEEEecCccccC------------CCCcceEEC
Confidence            99999999999999999999999998322            235678874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.84  E-value=3e-20  Score=140.24  Aligned_cols=111  Identities=23%  Similarity=0.243  Sum_probs=93.4

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCC--CCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDM--MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPV  154 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L  154 (249)
                      ++.|....+.|.|.|++|+||++.+.  +.+||||++++.+     .++||++++++.||+|||+|.|.+..   ....|
T Consensus         7 sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L   86 (128)
T cd08392           7 ALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQL   86 (128)
T ss_pred             EEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEE
Confidence            45677778999999999999998875  4889999999942     36799999999999999999999866   35689


Q ss_pred             EEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      .|.|||++.++++++||++.|+|.++...         ..+.....||++
T Consensus        87 ~v~V~~~~~~~~~~~lG~~~i~L~~~~~~---------~~~~~~~~W~~l  127 (128)
T cd08392          87 QVSVWHSRTLKRRVFLGEVLIPLADWDFE---------DTDSQRFLWYPL  127 (128)
T ss_pred             EEEEEeCCCCcCcceEEEEEEEcCCcccC---------CCCccccceEEC
Confidence            99999999999999999999999988322         123467789984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.83  E-value=2e-19  Score=140.62  Aligned_cols=122  Identities=28%  Similarity=0.519  Sum_probs=99.4

Q ss_pred             eeeEEEEEEEEeecCCCCCC-------------------------------CCCCcEEEEEECCeE-EeeeeecCcCCce
Q 025708           91 FIGLLKVKVVKGINLAIRDM-------------------------------MSSDPYVVLRLGQQT-VQTTIVKSNLNPV  138 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~~-------------------------------~~~dpyv~v~l~~~~-~kT~~~~~t~~P~  138 (249)
                      .-|+|.|+|++|++|+.+|.                               +.+||||++++++.+ .+|++++++.||.
T Consensus         5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~   84 (158)
T cd04015           5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPV   84 (158)
T ss_pred             EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence            46999999999999998872                               157999999998755 6999999999999


Q ss_pred             eeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeee
Q 025708          139 WNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINII  218 (249)
Q Consensus       139 W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~  218 (249)
                      |||+|.|.+......|.|+|||++.++ +++||.+.++++++..            +...+.||++.+.           
T Consensus        85 WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~------------g~~~~~w~~L~~~-----------  140 (158)
T cd04015          85 WNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLS------------GEPVEGWLPILDS-----------  140 (158)
T ss_pred             cceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccC------------CCCcceEEECcCC-----------
Confidence            999999998776678999999999875 5899999999999853            3357889986542           


Q ss_pred             CCeEEEEEEEEeccccCceEEEEEEEE
Q 025708          219 DGKVKQKISLKLQNVESGELELELEWM  245 (249)
Q Consensus       219 ~g~~~~~~~l~l~~~~~G~i~l~l~~~  245 (249)
                      +|+         .....|+|+|+++|.
T Consensus       141 ~~~---------~~~~~~~l~v~~~f~  158 (158)
T cd04015         141 NGK---------PPKPGAKIRVSLQFT  158 (158)
T ss_pred             CCC---------CCCCCCEEEEEEEEC
Confidence            111         112368999999883

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.83  E-value=1.7e-19  Score=134.93  Aligned_cols=100  Identities=31%  Similarity=0.649  Sum_probs=86.2

Q ss_pred             EEEEEEEeecCCCCCCC-CCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEE
Q 025708           95 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE  172 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~  172 (249)
                      |.|.|++|++|+..+.. .+||||++.+++.. .+|++++++.||.|||.|.|.+......|.|+|||++.+++|++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            78999999999998876 89999999997754 69999999999999999999987766789999999999999999999


Q ss_pred             EEEechhhhhhhhhcCCCCCcCCeeeeeeEecC
Q 025708          173 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD  205 (249)
Q Consensus       173 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~  205 (249)
                      +.+++..+...           +...+.|++|.
T Consensus        82 ~~~~~~~~~~~-----------~~~~~~W~~L~  103 (121)
T cd04054          82 VSLTREVISAH-----------PRGIDGWMNLT  103 (121)
T ss_pred             EEEcHHHhccC-----------CCCCCcEEECe
Confidence            99998877421           12356788753

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.83  E-value=5e-20  Score=142.04  Aligned_cols=103  Identities=22%  Similarity=0.334  Sum_probs=86.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEee------------C----CCc
Q 025708           94 LLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVP------------Q----EYG  152 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~------------~----~~~  152 (249)
                      .|+|+|++|++|+. ..+.+||||++.+..     .+++|++++++.||+|||+|.|.+.            .    ...
T Consensus         1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd04010           1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL   79 (148)
T ss_pred             CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence            48999999999998 335889999999965     5689999999999999999999985            1    125


Q ss_pred             cEEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCc
Q 025708          153 PVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNA  208 (249)
Q Consensus       153 ~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~  208 (249)
                      .|.|.|||++.+++|+|||++.|+|..+..+           ......||+|.+..
T Consensus        80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~-----------~~~~~~W~~L~~~~  124 (148)
T cd04010          80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ-----------AGSHQAWYFLQPRE  124 (148)
T ss_pred             EEEEEEEcCCCCCCCceeEEEEEeccccccc-----------CCcCcceeecCCcc
Confidence            7999999999988999999999999998433           12457899987653

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.83  E-value=6.4e-20  Score=134.99  Aligned_cols=103  Identities=40%  Similarity=0.687  Sum_probs=89.3

Q ss_pred             EEEEEEEeecCCCCCC-C-CCCcEEEEEECCeEEeeeeecCcCCcee-eeeEEEEeeCC---CccEEEEEEecCCCCCCC
Q 025708           95 LKVKVVKGINLAIRDM-M-SSDPYVVLRLGQQTVQTTIVKSNLNPVW-NEELMLSVPQE---YGPVKLEVFDHDTFSADD  168 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~-~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W-~e~f~f~v~~~---~~~L~i~V~d~~~~~~d~  168 (249)
                      |.|+|++|++|+.++. . .+||||++.++..+++|++++++.||.| ||+|.|.+...   ...|.|+|||++.+++++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            6899999999998874 3 7899999999999999999999999999 99999998762   468999999999999999


Q ss_pred             eeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          169 IMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       169 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      +||++.++|.++....         ....+.+||++.+
T Consensus        81 ~iG~~~~~l~~l~~~~---------~~~~~~~w~~l~~  109 (110)
T cd08688          81 AIGKVYIDLNPLLLKD---------SVSQISGWFPIYD  109 (110)
T ss_pred             ceEEEEEeHHHhcccC---------CccccCCeEEccc
Confidence            9999999999996531         1334789998654

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.83  E-value=5.3e-20  Score=137.89  Aligned_cols=96  Identities=18%  Similarity=0.207  Sum_probs=86.1

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC--C----eEEeeeeecCcCCceeeeeEEEEeeC---CCccE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPV  154 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L  154 (249)
                      ++.|....+.|.|+|++|+||+..+.. .+||||++++-  .    .+++|++++++.||+|||+|.|+++.   ....|
T Consensus         6 sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L   85 (124)
T cd08680           6 GLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTL   85 (124)
T ss_pred             EEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEE
Confidence            466778889999999999999988765 78999999983  2    36899999999999999999999876   46789


Q ss_pred             EEEEEecCCCCCCCeeEEEEEechhh
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDIQPL  180 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l~~l  180 (249)
                      .|+|||++.++++++||.+.|+|.++
T Consensus        86 ~~~V~~~~~~~~~~~lG~~~i~L~~~  111 (124)
T cd08680          86 QVDVCSVGPDQQEECLGGAQISLADF  111 (124)
T ss_pred             EEEEEeCCCCCceeEEEEEEEEhhhc
Confidence            99999999999999999999999988

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.83  E-value=9.5e-20  Score=136.89  Aligned_cols=108  Identities=31%  Similarity=0.535  Sum_probs=92.4

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC---CeEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLE  157 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~  157 (249)
                      ++.+....+.|.|+|++|++|+..+.. .+||||++.+.   ...++|++++++.||.|||+|.|.+..   ....|.|+
T Consensus         8 sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~   87 (124)
T cd08387           8 SLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVL   87 (124)
T ss_pred             EEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEE
Confidence            455666789999999999999988865 89999999994   345899999999999999999999876   24689999


Q ss_pred             EEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          158 VFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       158 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      |||++.++++++||++.++|.++..+            ...+.||++
T Consensus        88 V~d~~~~~~~~~iG~~~i~l~~~~~~------------~~~~~W~~l  122 (124)
T cd08387          88 LYDFDQFSRDECIGVVELPLAEVDLS------------EKLDLWRKI  122 (124)
T ss_pred             EEECCCCCCCceeEEEEEecccccCC------------CCcceEEEC
Confidence            99999999999999999999999432            256789874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.83  E-value=3.8e-20  Score=139.37  Aligned_cols=120  Identities=13%  Similarity=0.201  Sum_probs=98.2

Q ss_pred             cccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC---C--eEEeeeeecCcC-CceeeeeEEEEeeC--CCccE
Q 025708           84 KDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---Q--QTVQTTIVKSNL-NPVWNEELMLSVPQ--EYGPV  154 (249)
Q Consensus        84 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~--~~~kT~~~~~t~-~P~W~e~f~f~v~~--~~~~L  154 (249)
                      .|++|.+..|+|+|.|++|+||++.... .+||||++++-   .  .++||+++++|. +|+|||+|.|+++.  ....|
T Consensus         5 ~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l   84 (135)
T cd08692           5 LGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQF   84 (135)
T ss_pred             EEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEE
Confidence            4688999999999999999999987443 77999999982   1  468999999996 69999999999987  33468


Q ss_pred             EEEEEecCCCCCCCeeEEEEEechhhh-hhhhhcCCCCCcCCeeeeeeEe
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDIQPLL-TSALAFGDPEMFGNMQIGKWLK  203 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~-~~~~~~~~~~~~~~~~~~~w~~  203 (249)
                      .|+|||++..+++++||++.++.+... .+.+++.++....+.+++.|-.
T Consensus        85 ~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~  134 (135)
T cd08692          85 LIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHS  134 (135)
T ss_pred             EEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeec
Confidence            899999999999999999999997743 3345555555667888888864

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.83  E-value=3.2e-20  Score=141.31  Aligned_cols=120  Identities=20%  Similarity=0.251  Sum_probs=96.1

Q ss_pred             cccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccE
Q 025708           84 KDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPV  154 (249)
Q Consensus        84 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L  154 (249)
                      .++.|....+.|+|+|++|++|+..+.. .+||||++++..     .+.+|+++++++||+|||+|.|.++.   ....|
T Consensus         6 ~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l   85 (136)
T cd08406           6 LSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSL   85 (136)
T ss_pred             EEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEE
Confidence            3566777889999999999999998865 899999999932     25689999999999999999999876   45789


Q ss_pred             EEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEe
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK  203 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~  203 (249)
                      .|+|||++.++++++||++.++......+..++..+....+..++.|-.
T Consensus        86 ~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~~~v~~WH~  134 (136)
T cd08406          86 RVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLRKPVAMWHP  134 (136)
T ss_pred             EEEEEeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCCCeeeEeee
Confidence            9999999999999999999998776544444433333344666777754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.82  E-value=3.8e-19  Score=134.19  Aligned_cols=115  Identities=21%  Similarity=0.276  Sum_probs=95.6

Q ss_pred             EEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCCCCCCeeEEEEE
Q 025708           99 VVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSADDIMGEAEI  175 (249)
Q Consensus        99 v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~~~d~~iG~~~i  175 (249)
                      |++|++|+. ..+.+||||++.++..+++|++++++.||.|||+|.|.+..   ....|.|+|||++..++|++||++.+
T Consensus         2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~   80 (127)
T cd08373           2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV   80 (127)
T ss_pred             eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence            689999998 44489999999999999999999999999999999999864   35789999999999989999999999


Q ss_pred             echhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEeCC
Q 025708          176 DIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLD  248 (249)
Q Consensus       176 ~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~~  248 (249)
                      +|.++..+            .....|+++.+.                      -.....|+|++++.|.|.+
T Consensus        81 ~l~~l~~~------------~~~~~~~~L~~~----------------------~~~~~~~~l~l~~~~~~~~  119 (127)
T cd08373          81 SLQDLVSE------------GLLEVTEPLLDS----------------------NGRPTGATISLEVSYQPPD  119 (127)
T ss_pred             EhhHcccC------------CceEEEEeCcCC----------------------CCCcccEEEEEEEEEeCCC
Confidence            99999543            346678875432                      0111358999999999975

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.82  E-value=4.5e-19  Score=135.19  Aligned_cols=121  Identities=21%  Similarity=0.367  Sum_probs=97.7

Q ss_pred             EEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC----------CCccEEEEEEecC
Q 025708           94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ----------EYGPVKLEVFDHD  162 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~----------~~~~L~i~V~d~~  162 (249)
                      .|+|+|++|++|+..+.. .+||||++.++..+++|++++++.||.|||.|.|.+..          ....|.|+|||++
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d   81 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD   81 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence            589999999999998876 89999999999999999999999999999999997532          1246899999999


Q ss_pred             CCCCCCeeEEEEE-echhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEE
Q 025708          163 TFSADDIMGEAEI-DIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELE  241 (249)
Q Consensus       163 ~~~~d~~iG~~~i-~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~  241 (249)
                      ..++|++||++.+ ++..+...         ........|+++..                        .+...|+|.|.
T Consensus        82 ~~~~d~~iG~~~i~~~~~~~~~---------~~~~~~~~W~~L~~------------------------~~~~~Geil~~  128 (135)
T cd04017          82 SVGKDEFLGRSVAKPLVKLDLE---------EDFPPKLQWFPIYK------------------------GGQSAGELLAA  128 (135)
T ss_pred             CCCCCccceEEEeeeeeecccC---------CCCCCCceEEEeec------------------------CCCchhheeEE
Confidence            9999999999987 44333211         13446778998432                        23368999999


Q ss_pred             EEEEeC
Q 025708          242 LEWMPL  247 (249)
Q Consensus       242 l~~~~~  247 (249)
                      ++++++
T Consensus       129 ~~~~~~  134 (135)
T cd04017         129 FELIEV  134 (135)
T ss_pred             eEEEEe
Confidence            999886

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.82  E-value=2.2e-19  Score=131.06  Aligned_cols=100  Identities=26%  Similarity=0.449  Sum_probs=87.5

Q ss_pred             EEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCeeE
Q 025708           94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMG  171 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~iG  171 (249)
                      .|.|+|++|++|+..+.. .+||||+++++++.++|++++++.||.|||.|.|.+.. ....|.|+|||++.   +++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            389999999999988765 89999999999999999999999999999999999987 45689999999886   78999


Q ss_pred             EEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          172 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       172 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      ++.++|.++....          +...+.||+|.+
T Consensus        78 ~~~i~l~~l~~~~----------~~~~~~w~~L~~  102 (105)
T cd04050          78 SLTLPLSELLKEP----------DLTLDQPFPLDN  102 (105)
T ss_pred             EEEEEHHHhhccc----------cceeeeeEecCC
Confidence            9999999996431          345789998654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.82  E-value=2.3e-19  Score=135.57  Aligned_cols=110  Identities=23%  Similarity=0.333  Sum_probs=90.3

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCC--CCCCcEEEEEEC---CeEEeeeeecCcCCceeeeeEEEE-eeC---CCccEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDM--MSSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVK  155 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~---~~~~kT~~~~~t~~P~W~e~f~f~-v~~---~~~~L~  155 (249)
                      ++.|....+.|+|+|++|++|+..+.  +.+||||++.+.   .++.||++++++.||.|||+|.|. +..   ....|.
T Consensus         8 ~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~   87 (128)
T cd08388           8 SLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLH   87 (128)
T ss_pred             EEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEE
Confidence            34566677899999999999998775  378999999984   345799999999999999999994 543   335799


Q ss_pred             EEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          156 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      |+|||++.++++++||++.++|.++-.          .++..+..|+++
T Consensus        88 ~~V~d~d~~~~d~~lG~~~i~L~~l~~----------~~~~~~~~~~~~  126 (128)
T cd08388          88 FAVLSFDRYSRDDVIGEVVCPLAGADL----------LNEGELLVSREI  126 (128)
T ss_pred             EEEEEcCCCCCCceeEEEEEeccccCC----------CCCceEEEEEec
Confidence            999999999999999999999998832          234457788764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.82  E-value=4.7e-19  Score=131.72  Aligned_cols=101  Identities=23%  Similarity=0.365  Sum_probs=86.3

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEE
Q 025708           93 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE  172 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~  172 (249)
                      +.|.|.|++|++|+..+  ..||||++.+++++.+|++.++ .||.|||.|.|.+......|.|+|||++.+ .||+||+
T Consensus         2 ~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~   77 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGT   77 (127)
T ss_pred             ceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEE
Confidence            68999999999997655  4599999999999999999988 599999999999987666799999999975 8999999


Q ss_pred             EEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          173 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       173 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                      +.|+|.++..+..          .....||+|...
T Consensus        78 v~i~L~~v~~~~~----------~~~~~Wy~L~~~  102 (127)
T cd08394          78 VWIPLSTIRQSNE----------EGPGEWLTLDSE  102 (127)
T ss_pred             EEEEhHHcccCCC----------CCCCccEecChH
Confidence            9999999865521          234689997654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.82  E-value=6e-19  Score=132.92  Aligned_cols=88  Identities=22%  Similarity=0.484  Sum_probs=80.7

Q ss_pred             eeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCee
Q 025708           92 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM  170 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~i  170 (249)
                      ...|+|+|++|++|+..+.. .+||||++.++++.++|++++++.+|.|||.|.|.+......|.|+|||++.+ .|++|
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l   80 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL   80 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence            46899999999999988765 89999999999999999999999999999999999877777899999999987 58999


Q ss_pred             EEEEEechhh
Q 025708          171 GEAEIDIQPL  180 (249)
Q Consensus       171 G~~~i~l~~l  180 (249)
                      |.+.+++.++
T Consensus        81 G~~~~~l~~~   90 (126)
T cd04046          81 GQATLSADPN   90 (126)
T ss_pred             EEEEEecccC
Confidence            9999999875

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.82  E-value=1.7e-19  Score=134.50  Aligned_cols=101  Identities=17%  Similarity=0.305  Sum_probs=85.3

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEEEecCC
Q 025708           91 FIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDT  163 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V~d~~~  163 (249)
                      ..+.|.|+|++|+||+.++.+.+||||++++.+     .+++|++++++.||.|||+|.|.+..  ....|.|+|||++.
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~   89 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS   89 (119)
T ss_pred             cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence            468899999999999998855899999999953     35799999999999999999999866  23568999999998


Q ss_pred             CC-CCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEe
Q 025708          164 FS-ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK  203 (249)
Q Consensus       164 ~~-~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~  203 (249)
                      .. ++++||++.|+|.++..+            ....+||.
T Consensus        90 ~~~~~~~lG~~~i~l~~~~~~------------~~~~~Wy~  118 (119)
T cd08685          90 KSRDSGLLGCMSFGVKSIVNQ------------KEISGWYY  118 (119)
T ss_pred             CcCCCEEEEEEEecHHHhccC------------ccccceEe
Confidence            75 478999999999999532            34678886

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.81  E-value=1.9e-19  Score=135.19  Aligned_cols=108  Identities=27%  Similarity=0.450  Sum_probs=91.6

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC---eEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLE  157 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~---~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~  157 (249)
                      ++.|....+.|+|+|++|++|+..+.. .+||||++.+.+   ..++|++++++.||.|||+|.|.+..   ....|.|+
T Consensus         8 ~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~   87 (124)
T cd08385           8 SLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFS   87 (124)
T ss_pred             EEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEE
Confidence            355667789999999999999988865 889999999843   45799999999999999999999865   24689999


Q ss_pred             EEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          158 VFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       158 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      |||++.++++++||++.++|.++..            +.....|+++
T Consensus        88 V~d~d~~~~~~~lG~~~i~l~~~~~------------~~~~~~W~~l  122 (124)
T cd08385          88 VYDFDRFSKHDLIGEVRVPLLTVDL------------GHVTEEWRDL  122 (124)
T ss_pred             EEeCCCCCCCceeEEEEEecCcccC------------CCCcceEEEc
Confidence            9999999999999999999998843            3356788863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.81  E-value=2.3e-19  Score=138.67  Aligned_cols=90  Identities=28%  Similarity=0.461  Sum_probs=80.7

Q ss_pred             EEEEEEEEeecCCCCCCC---------------CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC--CCccEEE
Q 025708           94 LLKVKVVKGINLAIRDMM---------------SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKL  156 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~---------------~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i  156 (249)
                      .|+|+|++|++|+.++.+               .+||||++.+++++.+|++++++.||+|||+|.|.+..  ....|.|
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~   80 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI   80 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence            378999999999998733               47999999999999999999999999999999999753  4568999


Q ss_pred             EEEecCCCCCCCeeEEEEEechhhhhh
Q 025708          157 EVFDHDTFSADDIMGEAEIDIQPLLTS  183 (249)
Q Consensus       157 ~V~d~~~~~~d~~iG~~~i~l~~l~~~  183 (249)
                      +|||++..++|++||.+.++|.++...
T Consensus        81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~  107 (151)
T cd04018          81 QIRDWDRVGNDDVIGTHFIDLSKISNS  107 (151)
T ss_pred             EEEECCCCCCCCEEEEEEEeHHHhccC
Confidence            999999999999999999999998654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.81  E-value=1.8e-18  Score=130.16  Aligned_cols=88  Identities=31%  Similarity=0.501  Sum_probs=78.7

Q ss_pred             EEEEEEEEeecCCCCCCC-CCCcEEEEEECC---eEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCC
Q 025708           94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADD  168 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~---~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~  168 (249)
                      .|+|+|++|++|+..+.. .+||||++.+..   ...+|++++++.+|.|||+|.|.+.. ....|.|+|||++..++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            589999999999988876 899999999854   35799999999999999999999987 3578999999999988999


Q ss_pred             eeEEEEEechhhh
Q 025708          169 IMGEAEIDIQPLL  181 (249)
Q Consensus       169 ~iG~~~i~l~~l~  181 (249)
                      +||++.++|.++.
T Consensus        82 ~iG~~~i~l~~~~   94 (126)
T cd04043          82 LCGRASLKLDPKR   94 (126)
T ss_pred             eEEEEEEecCHHH
Confidence            9999999998764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.80  E-value=8.1e-19  Score=132.39  Aligned_cols=100  Identities=29%  Similarity=0.594  Sum_probs=85.7

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCC-------
Q 025708           93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTF-------  164 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~-------  164 (249)
                      ..|+|+|++|++|+..+.. .+||||++.++...++|++++++.+|.|||+|.|.+......|.|+|||++..       
T Consensus         1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~   80 (127)
T cd04027           1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQ   80 (127)
T ss_pred             CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccce
Confidence            3689999999999998865 88999999999888999999999999999999999876557899999999852       


Q ss_pred             ----CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          165 ----SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       165 ----~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                          +.+++||.+.+++.++..              ....||++..
T Consensus        81 ~~~~~~~~~iG~~~i~l~~~~~--------------~~~~w~~L~~  112 (127)
T cd04027          81 KFTRESDDFLGQTIIEVRTLSG--------------EMDVWYNLEK  112 (127)
T ss_pred             eccccCCCcceEEEEEhHHccC--------------CCCeEEECcc
Confidence                468999999999988621              2358998654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.80  E-value=5.6e-19  Score=130.15  Aligned_cols=102  Identities=23%  Similarity=0.414  Sum_probs=87.8

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCC-----CccEEEEEEecCCCCCC
Q 025708           93 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE-----YGPVKLEVFDHDTFSAD  167 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~-----~~~L~i~V~d~~~~~~d  167 (249)
                      -.|+|+|++|++|+   .+.+||||++++++++++|++++++.||.|||+|.|.+...     ...|.|+|||++.++++
T Consensus         4 ~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~   80 (111)
T cd04011           4 FQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD   80 (111)
T ss_pred             EEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence            46899999999998   34789999999999999999999999999999999997542     35799999999999899


Q ss_pred             CeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          168 DIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       168 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      ++||++.++|+.+..+.         ....+.+||+|.+
T Consensus        81 ~~iG~~~i~l~~v~~~~---------~~~~~~~w~~L~~  110 (111)
T cd04011          81 TLIGSFKLDVGTVYDQP---------DHAFLRKWLLLTD  110 (111)
T ss_pred             CccEEEEECCccccCCC---------CCcceEEEEEeeC
Confidence            99999999999996542         2346889998654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.80  E-value=4.7e-19  Score=133.57  Aligned_cols=108  Identities=28%  Similarity=0.372  Sum_probs=90.9

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEEeeC---CCccEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVK  155 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~  155 (249)
                      ++.|....+.|+|+|++|++|+..+.. .+||||++.+.     ..+++|++++++.||.|||+|.|.+..   ....|.
T Consensus         8 ~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~   87 (127)
T cd04030           8 TIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLD   87 (127)
T ss_pred             EEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEE
Confidence            345666679999999999999998875 89999999994     356899999999999999999999865   246899


Q ss_pred             EEEEecCCC--CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          156 LEVFDHDTF--SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       156 i~V~d~~~~--~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      |.|||++.+  +++++||++.++|.++..+            .....||+|
T Consensus        88 i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~------------~~~~~W~~L  126 (127)
T cd04030          88 VAVKNSKSFLSREKKLLGQVLIDLSDLDLS------------KGFTQWYDL  126 (127)
T ss_pred             EEEEECCcccCCCCceEEEEEEeccccccc------------CCccceEEC
Confidence            999999875  6899999999999998432            345788874

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.80  E-value=4.5e-19  Score=133.27  Aligned_cols=96  Identities=28%  Similarity=0.387  Sum_probs=84.0

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC----CCccE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPV  154 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L  154 (249)
                      ++.+....+.|+|+|++|++|+..+.. .+||||++.+..     .+++|++++++.||+|||+|.|.+..    ....|
T Consensus         8 ~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l   87 (125)
T cd04031           8 QLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTL   87 (125)
T ss_pred             EEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEE
Confidence            355667789999999999999998875 899999999954     46799999999999999999998643    34689


Q ss_pred             EEEEEecCCCCCCCeeEEEEEechhh
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDIQPL  180 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l~~l  180 (249)
                      .|+|||++.++.+++||++.++|.+.
T Consensus        88 ~~~V~d~~~~~~~~~iG~~~i~l~~~  113 (125)
T cd04031          88 EVTVWDYDRDGENDFLGEVVIDLADA  113 (125)
T ss_pred             EEEEEeCCCCCCCcEeeEEEEecccc
Confidence            99999999998999999999999983

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.80  E-value=1.9e-18  Score=129.61  Aligned_cols=88  Identities=30%  Similarity=0.545  Sum_probs=79.3

Q ss_pred             EEEEEEEeecCCCCCCC-CCCcEEEEEEC-CeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCC--CCee
Q 025708           95 LKVKVVKGINLAIRDMM-SSDPYVVLRLG-QQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSA--DDIM  170 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~--d~~i  170 (249)
                      |+|+|++|++|+..+.. .+||||+++++ .+.++|++++++.||.|||+|.|.+.. ...|.|+|||++.++.  |++|
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l   80 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL   80 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence            78999999999988865 89999999996 667899999999999999999999976 5799999999998875  5799


Q ss_pred             EEEEEechhhhhh
Q 025708          171 GEAEIDIQPLLTS  183 (249)
Q Consensus       171 G~~~i~l~~l~~~  183 (249)
                      |.+.+++.++...
T Consensus        81 G~~~i~l~~l~~~   93 (123)
T cd08382          81 GCVRIRANAVLPL   93 (123)
T ss_pred             eEEEEEHHHcccc
Confidence            9999999999643

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.80  E-value=6e-19  Score=132.21  Aligned_cols=108  Identities=30%  Similarity=0.452  Sum_probs=90.7

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCC-CC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRD-MM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPV  154 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~-~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L  154 (249)
                      ++.|....+.|+|+|++|++|+..+ .. .+||||++++.+     .+.+|++++++.+|.|||+|.|.+..   ....|
T Consensus         6 ~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l   85 (123)
T cd08521           6 SLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTL   85 (123)
T ss_pred             EEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEE
Confidence            3556677899999999999999888 44 899999999832     45799999999999999999999876   24689


Q ss_pred             EEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      .|+|||++.++++++||++.++|.++..+            ...+.||+|
T Consensus        86 ~i~v~d~~~~~~~~~iG~~~i~l~~l~~~------------~~~~~w~~l  123 (123)
T cd08521          86 QLSVWHHDRFGRNTFLGEVEIPLDSWDLD------------SQQSEWYPL  123 (123)
T ss_pred             EEEEEeCCCCcCCceeeEEEEeccccccc------------CCCccEEEC
Confidence            99999999999999999999999998422            235788873

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.80  E-value=3.5e-19  Score=136.14  Aligned_cols=120  Identities=18%  Similarity=0.312  Sum_probs=98.4

Q ss_pred             cccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC------eEEeeeeecCcCCceeeeeEEEEeeC---CCcc
Q 025708           84 KDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGP  153 (249)
Q Consensus        84 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~------~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~  153 (249)
                      .++.|....++|.|+|++|+||+..+.. .+||||++.+..      .+++|++++++.||+|||+|.|.++.   ....
T Consensus         6 ~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~   85 (138)
T cd08408           6 LGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVT   85 (138)
T ss_pred             EEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccE
Confidence            3567888899999999999999998776 899999999942      24699999999999999999999976   4568


Q ss_pred             EEEEEEecCCCCCCCeeEEEEEechhhhhh-hhhcCCCCCcCCeeeeeeEe
Q 025708          154 VKLEVFDHDTFSADDIMGEAEIDIQPLLTS-ALAFGDPEMFGNMQIGKWLK  203 (249)
Q Consensus       154 L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~-~~~~~~~~~~~~~~~~~w~~  203 (249)
                      |.|+|||++.++++++||++.+++.....+ ..++.......+..+..|..
T Consensus        86 L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~WH~  136 (138)
T cd08408          86 LMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCRWHT  136 (138)
T ss_pred             EEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeEeee
Confidence            999999999999999999999999866432 23343344456778888865

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.80  E-value=3.5e-18  Score=130.88  Aligned_cols=130  Identities=15%  Similarity=0.188  Sum_probs=100.7

Q ss_pred             eeeeEEEEEEEEeecCCCCCCCCCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCC-CC--
Q 025708           90 EFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDT-FS--  165 (249)
Q Consensus        90 ~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~-~~--  165 (249)
                      .....|.|.|++|++|+.++    +|||.+.+++.. .||+++.++.||.|+|+|.|.+......|.|.||+.+. .+  
T Consensus         8 R~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~   83 (146)
T cd04013           8 RTENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKK   83 (146)
T ss_pred             EEEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccc
Confidence            45688999999999999866    899999999987 59999999999999999999876656789999986543 22  


Q ss_pred             -CCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708          166 -ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  244 (249)
Q Consensus       166 -~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  244 (249)
                       .+++||.+.|+++.+.            .+..+++||++.+..-.....             -.-.....++|||+++|
T Consensus        84 ~~~~~IG~V~Ip~~~l~------------~~~~ve~Wfpl~~~~~~~~~~-------------~~~~~~~~~~lrik~rf  138 (146)
T cd04013          84 DKSQLIGTVNIPVTDVS------------SRQFVEKWYPVSTPKGNGKSG-------------GKEGKGESPSIRIKARY  138 (146)
T ss_pred             cCCcEEEEEEEEHHHhc------------CCCcccEEEEeecCCCCCccc-------------cccccCCCCEEEEEEEE
Confidence             5789999999999994            345688999976542111000             00112345899999999


Q ss_pred             EeCC
Q 025708          245 MPLD  248 (249)
Q Consensus       245 ~~~~  248 (249)
                      .++.
T Consensus       139 ~~~~  142 (146)
T cd04013         139 QSTR  142 (146)
T ss_pred             EEee
Confidence            9874

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.80  E-value=3.8e-19  Score=135.75  Aligned_cols=119  Identities=29%  Similarity=0.376  Sum_probs=94.4

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeCC---CccEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVK  155 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~~---~~~L~  155 (249)
                      ++.|....|.|.|.|++|++|+..+.. .+||||++.+..     ..++|++++++.||.|||+|.|.+...   ...|.
T Consensus         7 ~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~   86 (136)
T cd08402           7 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLI   86 (136)
T ss_pred             EeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEE
Confidence            466778889999999999999988775 899999999842     357899999999999999999998652   34799


Q ss_pred             EEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEe
Q 025708          156 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK  203 (249)
Q Consensus       156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~  203 (249)
                      |+|||++.+++|++||.+.+++.....+..++......++.++..|-.
T Consensus        87 ~~v~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~~~~~~~~wh~  134 (136)
T cd08402          87 VTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRRPIAQWHT  134 (136)
T ss_pred             EEEEeCCCCCCCceeEEEEECCccCChHHHHHHHHHhCCCCeeeEEEE
Confidence            999999999999999999999987543333333333344566666643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.79  E-value=1.1e-18  Score=131.13  Aligned_cols=108  Identities=27%  Similarity=0.450  Sum_probs=90.2

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC---CeEEeeeeecCcCCceeeeeEEEEeeC----CCccEEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKL  156 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i  156 (249)
                      +..|....+.|.|+|++|++|+..+.. .+||||++.+.   ....+|++++++.||.|||+|.|.+..    ....|.|
T Consensus         8 ~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~   87 (125)
T cd08386           8 SVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYL   87 (125)
T ss_pred             EEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEE
Confidence            345666678999999999999988865 89999999993   456899999999999999999998533    2357999


Q ss_pred             EEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          157 EVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       157 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      +|||++.++++++||++.++|.++..            +.....|+.|
T Consensus        88 ~v~d~d~~~~~~~iG~~~i~l~~l~~------------~~~~~~W~~l  123 (125)
T cd08386          88 QVLDYDRFSRNDPIGEVSLPLNKVDL------------TEEQTFWKDL  123 (125)
T ss_pred             EEEeCCCCcCCcEeeEEEEecccccC------------CCCcceEEec
Confidence            99999999999999999999999843            2346778764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.79  E-value=8.1e-19  Score=131.81  Aligned_cols=107  Identities=21%  Similarity=0.312  Sum_probs=90.0

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC---CeEEeeeeecCcCCceeeeeEEEE-eeC---CCccEEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKL  156 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~kT~~~~~t~~P~W~e~f~f~-v~~---~~~~L~i  156 (249)
                      ++.|....+.|.|+|++|+||+..+.. .+||||++.+.   .++++|+++++ .||+|||+|.|. +..   ....|.|
T Consensus         8 sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~   86 (124)
T cd08389           8 AFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRF   86 (124)
T ss_pred             EEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEE
Confidence            456777789999999999999998865 78999998873   35689999888 999999999998 654   4578999


Q ss_pred             EEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          157 EVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       157 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      +|||++.++++++||++.|+|.++..            +.....|+++
T Consensus        87 ~V~~~~~~~~~~~lG~~~i~L~~l~~------------~~~~~~w~~L  122 (124)
T cd08389          87 RLYGVERMRKERLIGEKVVPLSQLNL------------EGETTVWLTL  122 (124)
T ss_pred             EEEECCCcccCceEEEEEEeccccCC------------CCCceEEEeC
Confidence            99999999999999999999999933            2346778874

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.79  E-value=1e-18  Score=128.72  Aligned_cols=90  Identities=34%  Similarity=0.624  Sum_probs=80.0

Q ss_pred             eEEEEEEEEeecCCCCCC--CCCCcEEEEEECC---eEEeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEEecCC
Q 025708           93 GLLKVKVVKGINLAIRDM--MSSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDT  163 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~~---~~~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~d~~~  163 (249)
                      |+|+|+|++|++|+..+.  +.+||||++.+..   ..++|++++++.||.|||.|.|.+..    ....|.|+|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            689999999999998876  3789999999843   45899999999999999999998765    24689999999999


Q ss_pred             CCCCCeeEEEEEechhhhh
Q 025708          164 FSADDIMGEAEIDIQPLLT  182 (249)
Q Consensus       164 ~~~d~~iG~~~i~l~~l~~  182 (249)
                      ++.|++||++.+++.++..
T Consensus        81 ~~~dd~lG~~~i~l~~l~~   99 (111)
T cd04041          81 FTADDRLGRVEIDLKELIE   99 (111)
T ss_pred             CCCCCcceEEEEEHHHHhc
Confidence            9999999999999999963

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.79  E-value=4.8e-19  Score=135.22  Aligned_cols=119  Identities=24%  Similarity=0.350  Sum_probs=94.0

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVK  155 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~  155 (249)
                      ++.|....+.|.|+|++|++|+..+.. .+||||++.+..     .+.+|++++++.||.|+|+|.|.+..   ....|.
T Consensus         7 ~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~   86 (136)
T cd08404           7 SLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVE   86 (136)
T ss_pred             EEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEE
Confidence            345666678999999999999998865 899999999832     24789999999999999999999875   345789


Q ss_pred             EEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEe
Q 025708          156 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK  203 (249)
Q Consensus       156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~  203 (249)
                      |+|||++.++++++||++.+++.....+..++.......++.+..|-.
T Consensus        87 ~~v~d~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~~i~~Wh~  134 (136)
T cd08404          87 FLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQIAEWHM  134 (136)
T ss_pred             EEEEECCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCCeeeEEEe
Confidence            999999999999999999999988433333332223345667777754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.79  E-value=3e-18  Score=128.68  Aligned_cols=102  Identities=28%  Similarity=0.471  Sum_probs=88.8

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecC-cCCceeeeeEEEEeeCC----CccEEEEEEecCCCCC
Q 025708           93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQE----YGPVKLEVFDHDTFSA  166 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~-t~~P~W~e~f~f~v~~~----~~~L~i~V~d~~~~~~  166 (249)
                      |.|.|+|++|++|+..+.. .+||||+++++...++|++.++ +.||.|||+|.|.+...    ...|.|+|||++.++.
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            6899999999999988765 8999999999988899999875 89999999999999875    4689999999999989


Q ss_pred             CCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          167 DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       167 d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      +++||.+.++|.++..++            ....|+++..
T Consensus        81 d~~iG~~~i~l~~l~~~~------------~~~~~~~l~p  108 (124)
T cd04049          81 DDFIGEATIHLKGLFEEG------------VEPGTAELVP  108 (124)
T ss_pred             CCeEEEEEEEhHHhhhCC------------CCcCceEeec
Confidence            999999999999996543            3467777544

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.79  E-value=4.7e-19  Score=134.71  Aligned_cols=95  Identities=27%  Similarity=0.405  Sum_probs=84.1

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVK  155 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~  155 (249)
                      ++.|....+.|.|+|++|++|+..+.. .+||||++.+..     .+.+|++++++.||.|||+|.|.+..   ....|.
T Consensus         5 ~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~   84 (133)
T cd08384           5 SLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLE   84 (133)
T ss_pred             EEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEE
Confidence            466778889999999999999998875 899999999943     35799999999999999999999865   246799


Q ss_pred             EEEEecCCCCCCCeeEEEEEechh
Q 025708          156 LEVFDHDTFSADDIMGEAEIDIQP  179 (249)
Q Consensus       156 i~V~d~~~~~~d~~iG~~~i~l~~  179 (249)
                      |+|||++..+++++||++.+++..
T Consensus        85 ~~V~d~d~~~~~~~lG~~~i~l~~  108 (133)
T cd08384          85 ITVWDKDIGKSNDYIGGLQLGINA  108 (133)
T ss_pred             EEEEeCCCCCCccEEEEEEEecCC
Confidence            999999998899999999999975

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.78  E-value=2.3e-18  Score=129.06  Aligned_cols=108  Identities=24%  Similarity=0.331  Sum_probs=91.1

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCC-CC-CCCcEEEEEEC---CeEEeeeeecCcCCceeeeeEEEEeeC---CCccEEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRD-MM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKL  156 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~-~~-~~dpyv~v~l~---~~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i  156 (249)
                      ++.|....+.|.|+|++|++|+..+ .. .+||||++++.   ....+|++++++.+|.|||.|.|.+..   ....|.|
T Consensus         6 ~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i   85 (123)
T cd08390           6 SVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRL   85 (123)
T ss_pred             EEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEE
Confidence            4567777899999999999999987 34 88999999983   345789999999999999999999876   2457999


Q ss_pred             EEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          157 EVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       157 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      +|||++..+++++||++.++|.++..            ......|++|
T Consensus        86 ~v~d~~~~~~~~~iG~~~i~L~~l~~------------~~~~~~w~~L  121 (123)
T cd08390          86 SVYDVDRFSRHCIIGHVLFPLKDLDL------------VKGGVVWRDL  121 (123)
T ss_pred             EEEECCcCCCCcEEEEEEEeccceec------------CCCceEEEeC
Confidence            99999998889999999999999843            3345678774

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.78  E-value=1.9e-18  Score=129.96  Aligned_cols=106  Identities=19%  Similarity=0.323  Sum_probs=88.3

Q ss_pred             EEEEEEEEeecCCCCCCC-CCCcEEEEEECC-eEEeeeeec-CcCCceeeeeEEEEeeCC-----CccEEEEEEecCCCC
Q 025708           94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVK-SNLNPVWNEELMLSVPQE-----YGPVKLEVFDHDTFS  165 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~kT~~~~-~t~~P~W~e~f~f~v~~~-----~~~L~i~V~d~~~~~  165 (249)
                      +|+|+|++|++|+..+.. .+||||++++++ .+++|+++. ++.||.|||.|.|.+...     ...|.|+|||++.++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            489999999999988765 899999999988 788999975 589999999999999775     578999999999988


Q ss_pred             CCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          166 ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       166 ~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      .+++||++.++|.++..+....+       .....||++..
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~-------~~~~~~~~l~~  114 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAG-------ELRFLSYQLRR  114 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCC-------cceeEEEEeEC
Confidence            99999999999999976543211       23456887443

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.78  E-value=6.9e-18  Score=126.00  Aligned_cols=102  Identities=26%  Similarity=0.449  Sum_probs=89.1

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCee
Q 025708           93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM  170 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~i  170 (249)
                      |.|.|+|++|++|+..+.. .+||||++.+++ ...+|++++++.+|.|||.|.|.+......|.|+|||++.+++|++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            6899999999999998865 899999999976 45899999999999999999999877668999999999999999999


Q ss_pred             EEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          171 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       171 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                      |++.++|.++..+             ..+.||.+.+.
T Consensus        81 G~~~~~l~~l~~~-------------~~~~~~~~~~~  104 (120)
T cd04045          81 GSVEINVSDLIKK-------------NEDGKYVEYDD  104 (120)
T ss_pred             eEEEEeHHHhhCC-------------CCCceEEecCC
Confidence            9999999999654             23678765443

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.78  E-value=1.9e-18  Score=129.83  Aligned_cols=92  Identities=26%  Similarity=0.384  Sum_probs=81.1

Q ss_pred             eeeeEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEEEecCCCCCC
Q 025708           90 EFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTFSAD  167 (249)
Q Consensus        90 ~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V~d~~~~~~d  167 (249)
                      ...+.|+|+|++|++|+....+.+||||+|.+++.+++|++++++.||+|||+|.|....  ....|.|+|||++.+++|
T Consensus        25 ~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d  104 (127)
T cd04032          25 RGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD  104 (127)
T ss_pred             CCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence            456899999999999985333488999999999889999999999999999999997433  467899999999999999


Q ss_pred             CeeEEEEEechhhh
Q 025708          168 DIMGEAEIDIQPLL  181 (249)
Q Consensus       168 ~~iG~~~i~l~~l~  181 (249)
                      ++||++.++|....
T Consensus       105 d~IG~~~i~l~~~~  118 (127)
T cd04032         105 DLLGTCSVVPEAGV  118 (127)
T ss_pred             CeeEEEEEEecCCc
Confidence            99999999999764

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.78  E-value=9.6e-19  Score=133.54  Aligned_cols=119  Identities=24%  Similarity=0.389  Sum_probs=94.3

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC--C---eEEeeeeecCcCCceeeeeEEEEeeC---CCccEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVK  155 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~---~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~  155 (249)
                      ++.|....+.|+|+|++|++|+..+.. .+||||++.+.  .   .+.+|++++++.||.|||+|.|.+..   ....|.
T Consensus         7 sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~   86 (136)
T cd08405           7 SLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLI   86 (136)
T ss_pred             EEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEE
Confidence            456777789999999999999988765 89999999983  2   34789999999999999999999864   245799


Q ss_pred             EEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEe
Q 025708          156 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK  203 (249)
Q Consensus       156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~  203 (249)
                      |+|||++.++++++||++.+++........++...-...+..+.+|..
T Consensus        87 ~~v~d~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~~~~~wh~  134 (136)
T cd08405          87 ITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVAQWHR  134 (136)
T ss_pred             EEEEECCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCCchhEEEe
Confidence            999999999999999999999987633333332233344566777754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.78  E-value=2.3e-18  Score=135.09  Aligned_cols=94  Identities=28%  Similarity=0.402  Sum_probs=81.6

Q ss_pred             eeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEE
Q 025708           90 EFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVF  159 (249)
Q Consensus        90 ~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~  159 (249)
                      ...|.|.|+|++|++|+..+.. .+||||++++.     ..+++|++++++.||.|||+|.|.+..    ....|.|+||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            3579999999999999998865 89999999983     356899999999999999999998532    2357999999


Q ss_pred             ecCCCCCCCeeEEEEEechhhhhh
Q 025708          160 DHDTFSADDIMGEAEIDIQPLLTS  183 (249)
Q Consensus       160 d~~~~~~d~~iG~~~i~l~~l~~~  183 (249)
                      |++.++++++||++.+++..+...
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~  127 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSY  127 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccC
Confidence            999999999999999999998543

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.77  E-value=1.1e-17  Score=129.50  Aligned_cols=122  Identities=24%  Similarity=0.437  Sum_probs=89.1

Q ss_pred             EEEEEEEeec--CCCCCCC-CCCcEEEEEE-----CCeEEeeeeecCcCCceeeeeEEEEeeCC---------CccEEEE
Q 025708           95 LKVKVVKGIN--LAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQE---------YGPVKLE  157 (249)
Q Consensus        95 L~V~v~~a~~--L~~~~~~-~~dpyv~v~l-----~~~~~kT~~~~~t~~P~W~e~f~f~v~~~---------~~~L~i~  157 (249)
                      ..++|..|++  |+..+.. .+||||++++     +.++.+|+++++|+||+|||+|.|.+...         ...|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            3455556665  6666644 7899999997     23579999999999999999999999653         3579999


Q ss_pred             EEecCCC-CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCc
Q 025708          158 VFDHDTF-SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESG  236 (249)
Q Consensus       158 V~d~~~~-~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G  236 (249)
                      |||++.+ .+|++||++.++|+.+...            .....|+++.++       -.-.+|++  ++.++++..-+|
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~------------~~~~~~~~L~~~-------~k~~Gg~l--~v~ir~r~p~~~  142 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETK------------CEIHESVDLMDG-------RKATGGKL--EVKVRLREPLTG  142 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEccccccc------------CcceEEEEhhhC-------CCCcCCEE--EEEEEecCCCcc
Confidence            9999986 5799999999999998433            245678886654       11234554  455555554444


Q ss_pred             e
Q 025708          237 E  237 (249)
Q Consensus       237 ~  237 (249)
                      +
T Consensus       143 ~  143 (155)
T cd08690         143 K  143 (155)
T ss_pred             c
Confidence            4

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.77  E-value=1.8e-18  Score=131.69  Aligned_cols=118  Identities=24%  Similarity=0.383  Sum_probs=91.4

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVK  155 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~  155 (249)
                      ++.|....+.|+|+|++|++|+..+.. .+||||++.+..     ...+|++++++.||.|||+|.|.+..   ....|.
T Consensus         6 ~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~   85 (134)
T cd08403           6 SLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLI   85 (134)
T ss_pred             EEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEE
Confidence            456777789999999999999998875 899999999842     25789999999999999999999865   234699


Q ss_pred             EEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeE
Q 025708          156 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWL  202 (249)
Q Consensus       156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~  202 (249)
                      |+|||++.++++++||++.+++.....+..++.......+..+..|-
T Consensus        86 ~~v~d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~~~~~wh  132 (134)
T cd08403          86 IAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRKPIAQWH  132 (134)
T ss_pred             EEEEECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCCeeeEee
Confidence            99999999999999999999987443333222222234455566663

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.77  E-value=1e-17  Score=123.47  Aligned_cols=98  Identities=23%  Similarity=0.432  Sum_probs=82.9

Q ss_pred             CCCcEEEEEECCe-EEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCC
Q 025708          112 SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGD  189 (249)
Q Consensus       112 ~~dpyv~v~l~~~-~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~  189 (249)
                      .+||||++.++++ ..+|++++++.||.|||.|.|.+.. ....|.|.|||++.+ .+++||++.++|.++....     
T Consensus        12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~-----   85 (111)
T cd04052          12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT-----   85 (111)
T ss_pred             CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh-----
Confidence            6899999999875 5799999999999999999999976 456799999999998 8999999999999996532     


Q ss_pred             CCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEeC
Q 025708          190 PEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPL  247 (249)
Q Consensus       190 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~  247 (249)
                            .....||+                          |.+.+.|+|+|+++|.|+
T Consensus        86 ------~~~~~w~~--------------------------L~~~~~G~i~~~~~~~p~  111 (111)
T cd04052          86 ------SVGQQWFP--------------------------LSGNGQGRIRISALWKPV  111 (111)
T ss_pred             ------hccceeEE--------------------------CCCCCCCEEEEEEEEecC
Confidence                  12356776                          444578999999999985

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.76  E-value=3.1e-18  Score=130.86  Aligned_cols=119  Identities=18%  Similarity=0.236  Sum_probs=94.1

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccEEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKL  156 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i  156 (249)
                      ++.|....+.|.|.|++|+||+..+.+.+||||++.+..     .+++|++++++.||+|||.|.|.++.   ....|.|
T Consensus         7 sl~y~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~   86 (137)
T cd08409           7 SLTYNPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSL   86 (137)
T ss_pred             EEEECCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEE
Confidence            455667789999999999999988844899999999843     35789999999999999999999975   3468999


Q ss_pred             EEEecCCCCCCCeeEEEEEechhhh--hhhhhcCCCCCcCCeeeeeeEe
Q 025708          157 EVFDHDTFSADDIMGEAEIDIQPLL--TSALAFGDPEMFGNMQIGKWLK  203 (249)
Q Consensus       157 ~V~d~~~~~~d~~iG~~~i~l~~l~--~~~~~~~~~~~~~~~~~~~w~~  203 (249)
                      +|||++..+++++||++.++.....  .+..++..+....+..+..|-.
T Consensus        87 ~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~~WH~  135 (137)
T cd08409          87 SVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHA  135 (137)
T ss_pred             EEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCceeEEEe
Confidence            9999999899999999999865443  2233333333445677777764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.76  E-value=3.1e-18  Score=130.57  Aligned_cols=96  Identities=27%  Similarity=0.493  Sum_probs=81.7

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVK  155 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~  155 (249)
                      ++.|....+.|+|+|++|++|+..+.. .+||||++++..     .+++|++++++.||.|||+|.|.+..   ....|.
T Consensus         6 ~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~   85 (135)
T cd08410           6 SLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLV   85 (135)
T ss_pred             EEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEE
Confidence            456777789999999999999998875 899999999832     34789999999999999999999865   234699


Q ss_pred             EEEEecCCCCCCCeeEEEEEechhh
Q 025708          156 LEVFDHDTFSADDIMGEAEIDIQPL  180 (249)
Q Consensus       156 i~V~d~~~~~~d~~iG~~~i~l~~l  180 (249)
                      |+|||++..+++++||++.|.....
T Consensus        86 ~~V~d~d~~~~~~~iG~~~l~~~~~  110 (135)
T cd08410          86 FTVYGHNVKSSNDFIGRIVIGQYSS  110 (135)
T ss_pred             EEEEeCCCCCCCcEEEEEEEcCccC
Confidence            9999999999999999998776443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.76  E-value=5.7e-18  Score=128.80  Aligned_cols=97  Identities=28%  Similarity=0.339  Sum_probs=84.5

Q ss_pred             cccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC-------CeEEeeeeecCcCCceeeeeEEEEeeC-----CCc
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-------QQTVQTTIVKSNLNPVWNEELMLSVPQ-----EYG  152 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-------~~~~kT~~~~~t~~P~W~e~f~f~v~~-----~~~  152 (249)
                      +.+....+.|+|.|++|++|+..+.. .+||||++++.       ...++|++++++.||+|||+|.|.+..     ...
T Consensus         9 l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~   88 (133)
T cd04009           9 AYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGA   88 (133)
T ss_pred             EEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCC
Confidence            44555678999999999999988765 89999999985       246899999999999999999999865     245


Q ss_pred             cEEEEEEecCCCCCCCeeEEEEEechhhhh
Q 025708          153 PVKLEVFDHDTFSADDIMGEAEIDIQPLLT  182 (249)
Q Consensus       153 ~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~  182 (249)
                      .|.|+|||++.++++++||++.++|.++..
T Consensus        89 ~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          89 LLLFTVKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             EEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence            799999999999889999999999999963

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.75  E-value=2.8e-17  Score=121.68  Aligned_cols=100  Identities=36%  Similarity=0.530  Sum_probs=85.7

Q ss_pred             EEEEEEEeecCCCCCCC-CCCcEEEEEECC-eEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCeeE
Q 025708           95 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMG  171 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~iG  171 (249)
                      |+|.|++|++|+..+.. .+||||++.+++ ..++|+++.++.+|.|||+|.|.+.. ....|.|+|||++..+++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            57999999999988765 789999999965 44799999999999999999999876 4678999999999988999999


Q ss_pred             EEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          172 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       172 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      ++.+++.++..            +.....|+++..
T Consensus        81 ~~~~~l~~l~~------------~~~~~~~~~L~~  103 (115)
T cd04040          81 SAYIDLSDLEP------------EETTELTLPLDG  103 (115)
T ss_pred             EEEEEHHHcCC------------CCcEEEEEECcC
Confidence            99999999843            334677777544

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.75  E-value=1.2e-17  Score=129.23  Aligned_cols=90  Identities=33%  Similarity=0.543  Sum_probs=79.3

Q ss_pred             cceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----------------------------eEEeeeeecCcCCc
Q 025708           88 MVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----------------------------QTVQTTIVKSNLNP  137 (249)
Q Consensus        88 ~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----------------------------~~~kT~~~~~t~~P  137 (249)
                      ..++.+.|.|+|++|++|+..+.. .+||||++.+..                             ...+|++++++.+|
T Consensus        23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP  102 (153)
T cd08676          23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP  102 (153)
T ss_pred             cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence            445689999999999999998875 899999999853                             13689999999999


Q ss_pred             eeeeeEEEEeeC-CCccEEEEEEecCCCCCCCeeEEEEEechhhh
Q 025708          138 VWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLL  181 (249)
Q Consensus       138 ~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~  181 (249)
                      .|||+|.|.+.. ....|.|+|||++    +++||++.+++.++.
T Consensus       103 ~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~  143 (153)
T cd08676         103 VWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP  143 (153)
T ss_pred             ccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence            999999999976 4578999999997    789999999999995

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>PLN03008 Phospholipase D delta

Probab=99.75  E-value=1.8e-17  Score=154.69  Aligned_cols=130  Identities=26%  Similarity=0.544  Sum_probs=104.7

Q ss_pred             cccceeeeEEEEEEEEeecCCCCC-------------------------------------------CCCCCcEEEEEEC
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRD-------------------------------------------MMSSDPYVVLRLG  122 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~-------------------------------------------~~~~dpyv~v~l~  122 (249)
                      ....-.-|.|.|+|.+|++|+.++                                           ..++||||+|.++
T Consensus         7 ~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg   86 (868)
T PLN03008          7 EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP   86 (868)
T ss_pred             cceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC
Confidence            334445699999999999988521                                           1156999999998


Q ss_pred             CeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeee
Q 025708          123 QQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKW  201 (249)
Q Consensus       123 ~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w  201 (249)
                      .++ .||++++++.||+|||+|.|.+......|.|+|||+|.++ +++||++.|+|+++..            +...+.|
T Consensus        87 ~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~------------Ge~vd~W  153 (868)
T PLN03008         87 QATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIAS------------GERISGW  153 (868)
T ss_pred             CcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCC------------CCceEEE
Confidence            764 6999999999999999999999886779999999999996 5899999999999943            4568899


Q ss_pred             EecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEeCC
Q 025708          202 LKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLD  248 (249)
Q Consensus       202 ~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~~  248 (249)
                      +++.+.           +|+         .....|+|+|+|+|.|+.
T Consensus       154 l~Ll~~-----------~~k---------p~k~~~kl~v~lqf~pv~  180 (868)
T PLN03008        154 FPVLGA-----------SGK---------PPKAETAIFIDMKFTPFD  180 (868)
T ss_pred             EEcccc-----------CCC---------CCCCCcEEEEEEEEEEcc
Confidence            996553           111         122468999999999985

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.74  E-value=5.7e-17  Score=120.31  Aligned_cols=112  Identities=21%  Similarity=0.424  Sum_probs=85.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCCCCCCee
Q 025708           95 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSADDIM  170 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~~~d~~i  170 (249)
                      |+|+|++|++|+..  +.+||||++++++.. ++|+++++ .+|.|||+|.|.+..   ....|.|.+||.+....+.++
T Consensus         2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~   78 (117)
T cd08383           2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI   78 (117)
T ss_pred             eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence            78999999999977  678999999998754 79999999 999999999999977   335688889998876666677


Q ss_pred             EEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708          171 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  244 (249)
Q Consensus       171 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  244 (249)
                      |.+.|.....              +.....||++....                     -.....|+|+|++.|
T Consensus        79 g~v~l~~~~~--------------~~~~~~w~~L~~~~---------------------~~~~~~G~l~l~~~~  117 (117)
T cd08383          79 GKVALSKLDL--------------GQGKDEWFPLTPVD---------------------PDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEecCcCC--------------CCcceeEEECccCC---------------------CCCCcCceEEEEEEC
Confidence            7655543322              23467899865431                     012347999998875

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.73  E-value=1.7e-16  Score=120.82  Aligned_cols=103  Identities=24%  Similarity=0.370  Sum_probs=83.3

Q ss_pred             EEEEEEEEeecCCCCCC-CCCCcEEEEEECC-------------eEEeeeeecCcCCcee-eeeEEEEeeCCCccEEEEE
Q 025708           94 LLKVKVVKGINLAIRDM-MSSDPYVVLRLGQ-------------QTVQTTIVKSNLNPVW-NEELMLSVPQEYGPVKLEV  158 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~-~~~dpyv~v~l~~-------------~~~kT~~~~~t~~P~W-~e~f~f~v~~~~~~L~i~V  158 (249)
                      ++.|.+++|++|+ .+. +.+||||++++..             +.++|+++++++||+| ||+|.|.+.. ...|.|+|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V   79 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV   79 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence            4689999999998 454 4899999999942             3689999999999999 9999999864 46899999


Q ss_pred             EecCCCCC---CCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          159 FDHDTFSA---DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       159 ~d~~~~~~---d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                      ||++..++   +++||++.++|.++......         ..+..|+++..+
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~---------~~~~~~~~l~k~  122 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAI---------GDQELSYTLGRR  122 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhcccccC---------CceEEEEECCcC
Confidence            99875443   79999999999999765322         236778886544

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.73  E-value=1.6e-18  Score=149.52  Aligned_cols=99  Identities=33%  Similarity=0.544  Sum_probs=87.6

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEEEecCCC
Q 025708           93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTF  164 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V~d~~~~  164 (249)
                      ..|+|.|.+|+||.++|.+ .+||||++.+-     ..+++|++++.++||+|||+|+|.+..  .++.|.|+|||||+.
T Consensus       180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT  259 (683)
T KOG0696|consen  180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT  259 (683)
T ss_pred             ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence            5688999999999999987 99999999993     356899999999999999999999876  467899999999999


Q ss_pred             CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          165 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       165 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      +++||+|..++.+++|...             .+++||.+
T Consensus       260 sRNDFMGslSFgisEl~K~-------------p~~GWyKl  286 (683)
T KOG0696|consen  260 SRNDFMGSLSFGISELQKA-------------PVDGWYKL  286 (683)
T ss_pred             ccccccceecccHHHHhhc-------------chhhHHHH
Confidence            9999999999999999654             46677764

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.73  E-value=4.5e-17  Score=122.32  Aligned_cols=88  Identities=32%  Similarity=0.561  Sum_probs=79.0

Q ss_pred             EEEEEEEEeecCCCCCCC-CCCcEEEEEECCeE--EeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCe
Q 025708           94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT--VQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDI  169 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~--~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~  169 (249)
                      +|+|.|++|++|+..+.. .+||||++.+++..  .+|++++++.||.|||+|.|.+.. ....|.|+|||++.++.|++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            478999999999998876 89999999998765  578889999999999999999765 45689999999999999999


Q ss_pred             eEEEEEechhhh
Q 025708          170 MGEAEIDIQPLL  181 (249)
Q Consensus       170 iG~~~i~l~~l~  181 (249)
                      ||++.++|.+..
T Consensus        81 iG~~~i~l~~~~   92 (124)
T cd04037          81 IGETVIDLEDRF   92 (124)
T ss_pred             eEEEEEeecccc
Confidence            999999999875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.73  E-value=3.6e-17  Score=124.91  Aligned_cols=101  Identities=24%  Similarity=0.419  Sum_probs=86.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEEC----CeEEeeeeecCcCCceeeeeEEEEeeCC----------------CccE
Q 025708           95 LKVKVVKGINLAIRDMMSSDPYVVLRLG----QQTVQTTIVKSNLNPVWNEELMLSVPQE----------------YGPV  154 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~~~~dpyv~v~l~----~~~~kT~~~~~t~~P~W~e~f~f~v~~~----------------~~~L  154 (249)
                      |+|.|++|++|+....+.+||||++.++    ...++|++++++.+|.|+|+|.|.+...                ...|
T Consensus         1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l   80 (137)
T cd08675           1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL   80 (137)
T ss_pred             CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence            5799999999988833489999999998    6779999999999999999999997653                4579


Q ss_pred             EEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                      .|+|||++..+.+++||++.++|.++...            .....||++...
T Consensus        81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~------------~~~~~W~~L~~~  121 (137)
T cd08675          81 RVELWHASMVSGDDFLGEVRIPLQGLQQA------------GSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEcCCcCcCCcEEEEEEEehhhccCC------------CcccceEecCCc
Confidence            99999999988999999999999998532            245789987664

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.73  E-value=2.4e-16  Score=118.57  Aligned_cols=90  Identities=28%  Similarity=0.499  Sum_probs=78.5

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCcEEEEEECCe-EEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeE
Q 025708           93 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG  171 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~-~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG  171 (249)
                      ..|.|+|.+|+.+.....+.+||||+++++++ ..+|++++++.+|.|||.|.|.+.. ...|.|+|||++..+.+++||
T Consensus         2 ~~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG   80 (125)
T cd04021           2 SQLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLG   80 (125)
T ss_pred             ceEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEE
Confidence            36899999999444444348999999999877 7999999999999999999999864 478999999999999999999


Q ss_pred             EEEEechhhhhh
Q 025708          172 EAEIDIQPLLTS  183 (249)
Q Consensus       172 ~~~i~l~~l~~~  183 (249)
                      ++.++|.++...
T Consensus        81 ~~~i~l~~l~~~   92 (125)
T cd04021          81 EASLDLSDILKN   92 (125)
T ss_pred             EEEEEHHHhHhh
Confidence            999999999765

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.73  E-value=1.3e-16  Score=117.20  Aligned_cols=81  Identities=23%  Similarity=0.485  Sum_probs=70.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEec-------C
Q 025708           95 LKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDH-------D  162 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~-------~  162 (249)
                      |.|+|.+|+||+.    .+||||++.++.     .+.+|+++++|+||+|||+|.|.+.. ...|.+.|||+       |
T Consensus         1 L~V~V~~A~~L~~----~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d   75 (118)
T cd08686           1 LNVIVHSAQGFKQ----SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLD   75 (118)
T ss_pred             CEEEEEeCCCCCC----CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccccccc
Confidence            6899999999963    479999999853     35899999999999999999999975 57999999998       5


Q ss_pred             CCCCCCeeEEEEEechhh
Q 025708          163 TFSADDIMGEAEIDIQPL  180 (249)
Q Consensus       163 ~~~~d~~iG~~~i~l~~l  180 (249)
                      ..+.|++||.+.+.|+.-
T Consensus        76 ~~~~d~~~G~g~i~Ld~~   93 (118)
T cd08686          76 GEGTDAIMGKGQIQLDPQ   93 (118)
T ss_pred             ccCcccEEEEEEEEECHH
Confidence            667899999988888654

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.72  E-value=2.4e-17  Score=125.28  Aligned_cols=94  Identities=31%  Similarity=0.460  Sum_probs=82.1

Q ss_pred             cccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeCC---CccEEE
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKL  156 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~~---~~~L~i  156 (249)
                      ..|....+.|.|.|++|++|+..+.. .+||||++.+..     ..++|++++++.+|.|||+|.|.+...   ...|.|
T Consensus         7 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~   86 (134)
T cd00276           7 LSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVI   86 (134)
T ss_pred             EEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEE
Confidence            44555678999999999999988755 889999999854     256999999999999999999998763   478999


Q ss_pred             EEEecCCCCCCCeeEEEEEechh
Q 025708          157 EVFDHDTFSADDIMGEAEIDIQP  179 (249)
Q Consensus       157 ~V~d~~~~~~d~~iG~~~i~l~~  179 (249)
                      +|||++..+.+++||.+.++|.+
T Consensus        87 ~v~d~~~~~~~~~lG~~~i~l~~  109 (134)
T cd00276          87 TVVDKDSVGRNEVIGQVVLGPDS  109 (134)
T ss_pred             EEEecCCCCCCceeEEEEECCCC
Confidence            99999998899999999999998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.72  E-value=3.3e-17  Score=165.17  Aligned_cols=123  Identities=21%  Similarity=0.381  Sum_probs=102.0

Q ss_pred             cccceeeeEEEEEEEEeecCCCCCCCCCCcEEEEEECCe-EEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEEEecC
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHD  162 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~-~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V~d~~  162 (249)
                      .-+....|.|+|+|++|.+|. .+.+.+||||++.++++ +.||++++++.||+|||.|+|.+..  ....|.|+|||+|
T Consensus      1973 ~~~~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200       1973 SLLQCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred             HHHhhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence            345566899999999999998 55568999999999965 7899999999999999999987766  3467999999999


Q ss_pred             CCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCce---EE
Q 025708          163 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGE---LE  239 (249)
Q Consensus       163 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~---i~  239 (249)
                      .+++ +.||.+.|+|.++..+            ..+.+||++.+                        ++.+.|+   |+
T Consensus      2052 ~f~k-d~~G~~~i~l~~vv~~------------~~~~~~~~L~~------------------------~~~k~G~~~~~~ 2094 (2102)
T PLN03200       2052 TFGK-SSLGKVTIQIDRVVME------------GTYSGEYSLNP------------------------ESNKDGSSRTLE 2094 (2102)
T ss_pred             ccCC-CCCceEEEEHHHHhcC------------ceeeeeeecCc------------------------ccccCCCcceEE
Confidence            9955 5999999999999643            35667777432                        3456888   99


Q ss_pred             EEEEEEe
Q 025708          240 LELEWMP  246 (249)
Q Consensus       240 l~l~~~~  246 (249)
                      ++++|.+
T Consensus      2095 ~e~~w~~ 2101 (2102)
T PLN03200       2095 IEFQWSN 2101 (2102)
T ss_pred             EEEEecC
Confidence            9999964

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.1e-16  Score=143.06  Aligned_cols=110  Identities=28%  Similarity=0.424  Sum_probs=93.4

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC---eEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLE  157 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~---~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~  157 (249)
                      ++.|......|+|+|++|++|+..+.. .+||||++++..   .+.+|++.++|+||+|||+|.|.|..   ....|.+.
T Consensus       159 sl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~  238 (421)
T KOG1028|consen  159 SLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLS  238 (421)
T ss_pred             EEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEE
Confidence            466677778999999999999999954 799999999954   45899999999999999999999765   46789999


Q ss_pred             EEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          158 VFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       158 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      |||+|+|++|++||++.++|..+...            .....|.++..
T Consensus       239 V~~~drfsr~~~iGev~~~l~~~~~~------------~~~~~w~~l~~  275 (421)
T KOG1028|consen  239 VYDFDRFSRHDFIGEVILPLGEVDLL------------STTLFWKDLQP  275 (421)
T ss_pred             EEecCCcccccEEEEEEecCcccccc------------ccceeeecccc
Confidence            99999999999999999998877322            12566887655

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.71  E-value=1.3e-16  Score=120.86  Aligned_cols=102  Identities=31%  Similarity=0.508  Sum_probs=87.3

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEEEecCCC
Q 025708           93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTF  164 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V~d~~~~  164 (249)
                      +.|+|+|++|++|+..+.. .+||||++.+.+     ..++|++++++.+|.|||+|.|.+..  ....|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            8899999999999987765 789999999953     56899999999999999999999875  346799999999998


Q ss_pred             CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          165 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       165 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                      +.+++||++.++|.++...             ....||++.+.
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-------------~~~~w~~L~~~  122 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-------------PVDGWYKLLNQ  122 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-------------ccCceEECcCc
Confidence            8999999999999999532             35678875443

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.71  E-value=1.8e-16  Score=118.30  Aligned_cols=86  Identities=30%  Similarity=0.493  Sum_probs=74.7

Q ss_pred             EEEEeecCCCCCCC-CCCcEEEEEECCe-------EEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCC----C
Q 025708           98 KVVKGINLAIRDMM-SSDPYVVLRLGQQ-------TVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDT----F  164 (249)
Q Consensus        98 ~v~~a~~L~~~~~~-~~dpyv~v~l~~~-------~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~----~  164 (249)
                      ..++|++|+..+.. .+||||++++...       .++|++++++.||+|+|+|.|.+.. ....|.|+|||++.    +
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            45789999988865 8999999999554       3899999999999999999998654 45689999999997    7


Q ss_pred             CCCCeeEEEEEechhhhhh
Q 025708          165 SADDIMGEAEIDIQPLLTS  183 (249)
Q Consensus       165 ~~d~~iG~~~i~l~~l~~~  183 (249)
                      +++++||++.+++.++..+
T Consensus        85 ~~~d~iG~~~i~l~~l~~~  103 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSS  103 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcC
Confidence            8999999999999999643

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.68  E-value=1.6e-15  Score=114.27  Aligned_cols=88  Identities=31%  Similarity=0.517  Sum_probs=76.1

Q ss_pred             eEEEEEEEEeecCCCCC---CCCCCcEEEEEE------CCeEEeeeeecCcC-CceeeeeEEEEeeCC-CccEEEEEEec
Q 025708           93 GLLKVKVVKGINLAIRD---MMSSDPYVVLRL------GQQTVQTTIVKSNL-NPVWNEELMLSVPQE-YGPVKLEVFDH  161 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~---~~~~dpyv~v~l------~~~~~kT~~~~~t~-~P~W~e~f~f~v~~~-~~~L~i~V~d~  161 (249)
                      -.|+|+|++|++|+..+   .+..||||++++      ...+.+|+++.++. +|.|+|+|.|.+... ...|.|+|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            36899999999999887   238899999999      34568999988776 999999999998763 35799999999


Q ss_pred             CCCCCCCeeEEEEEechhhh
Q 025708          162 DTFSADDIMGEAEIDIQPLL  181 (249)
Q Consensus       162 ~~~~~d~~iG~~~i~l~~l~  181 (249)
                      +.. ++++||.+.++|.++.
T Consensus        82 ~~~-~~~~iG~~~~~l~~l~  100 (128)
T cd00275          82 DSG-DDDFLGQACLPLDSLR  100 (128)
T ss_pred             CCC-CCcEeEEEEEEhHHhc
Confidence            988 8999999999999983

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.67  E-value=5.1e-16  Score=116.38  Aligned_cols=97  Identities=28%  Similarity=0.421  Sum_probs=82.6

Q ss_pred             cccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEE-eeC---CCccEE
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVK  155 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~-v~~---~~~~L~  155 (249)
                      +.|....+.|+|+|++|++|+..+.. .+||||++.+.     ....+|++++++.+|.|||.|.|. +..   ....|.
T Consensus         8 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~   87 (123)
T cd04035           8 LLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLR   87 (123)
T ss_pred             EEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEE
Confidence            45666778999999999999988765 88999999983     236899999999999999999996 332   246899


Q ss_pred             EEEEecCCCCCCCeeEEEEEechhhhhh
Q 025708          156 LEVFDHDTFSADDIMGEAEIDIQPLLTS  183 (249)
Q Consensus       156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~  183 (249)
                      |+|||++.+ .+++||.+.++|.++..+
T Consensus        88 ~~v~d~~~~-~~~~iG~~~i~l~~l~~~  114 (123)
T cd04035          88 LLVLDEDRF-GNDFLGETRIPLKKLKPN  114 (123)
T ss_pred             EEEEEcCCc-CCeeEEEEEEEcccCCCC
Confidence            999999988 889999999999999644

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.62  E-value=3.4e-15  Score=109.66  Aligned_cols=85  Identities=29%  Similarity=0.576  Sum_probs=72.8

Q ss_pred             EEEEEEeecCCCCCCC-CCCcEEEEEECCe------EEeeeeecCcCCceeeeeEEEEeeC-----CCccEEEEEEecCC
Q 025708           96 KVKVVKGINLAIRDMM-SSDPYVVLRLGQQ------TVQTTIVKSNLNPVWNEELMLSVPQ-----EYGPVKLEVFDHDT  163 (249)
Q Consensus        96 ~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~------~~kT~~~~~t~~P~W~e~f~f~v~~-----~~~~L~i~V~d~~~  163 (249)
                      .+..++|++|+..+.. .+||||++++...      .++|++++++.||.|| +|.|.+..     ....|.|+|||++.
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~   81 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS   81 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence            3456799999998876 8999999998432      4899999999999999 68877532     25689999999999


Q ss_pred             CCCCCeeEEEEEechhhh
Q 025708          164 FSADDIMGEAEIDIQPLL  181 (249)
Q Consensus       164 ~~~d~~iG~~~i~l~~l~  181 (249)
                      .++|++||++.+++.++.
T Consensus        82 ~~~d~~iG~~~~~l~~l~   99 (110)
T cd04047          82 SGKHDLIGEFETTLDELL   99 (110)
T ss_pred             CCCCcEEEEEEEEHHHHh
Confidence            999999999999999996

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.60  E-value=9e-15  Score=101.57  Aligned_cols=80  Identities=33%  Similarity=0.640  Sum_probs=71.4

Q ss_pred             EEEEEEEeecCCCCCCC-CCCcEEEEEECC---eEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCe
Q 025708           95 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDI  169 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~---~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~  169 (249)
                      |+|+|++|++|+..+.. ..||||++.+..   ..++|+++.++.+|.|+|+|.|.+.. ....|.|+|||++..+.|++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            78999999999987765 889999999966   67999999999999999999999655 44569999999999988999


Q ss_pred             eEEEE
Q 025708          170 MGEAE  174 (249)
Q Consensus       170 iG~~~  174 (249)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=5.9e-15  Score=132.73  Aligned_cols=130  Identities=25%  Similarity=0.532  Sum_probs=110.5

Q ss_pred             cccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCC-
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDT-  163 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~-  163 (249)
                      .+...+...++++|+.|.+|..+|.. ++||||...++..+.+|+++...+||+|||.|.|.+.+....+++.|||.|. 
T Consensus       288 egsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~d  367 (1283)
T KOG1011|consen  288 EGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDND  367 (1283)
T ss_pred             ccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCccc
Confidence            45677889999999999999999885 9999999999999999999999999999999999999988899999999874 


Q ss_pred             ----------CCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccc
Q 025708          164 ----------FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNV  233 (249)
Q Consensus       164 ----------~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~  233 (249)
                                -.+|||+|...|.+..|..              .++-||.     |.+.+..+..+|.+..-|.+.+++.
T Consensus       368 lksklrqkl~resddflgqtvievrtlsg--------------emdvwyn-----lekrtdksavsgairlhisveikge  428 (1283)
T KOG1011|consen  368 LKSKLRQKLTRESDDFLGQTVIEVRTLSG--------------EMDVWYN-----LEKRTDKSAVSGAIRLHISVEIKGE  428 (1283)
T ss_pred             HHHHHHHHhhhcccccccceeEEEEeccc--------------chhhhcc-----hhhccchhhccceEEEEEEEEEcCc
Confidence                      2468999999999988832              4788997     4555566667788877777777664


Q ss_pred             c
Q 025708          234 E  234 (249)
Q Consensus       234 ~  234 (249)
                      +
T Consensus       429 e  429 (1283)
T KOG1011|consen  429 E  429 (1283)
T ss_pred             c
Confidence            3

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=2.1e-14  Score=128.40  Aligned_cols=122  Identities=27%  Similarity=0.403  Sum_probs=97.9

Q ss_pred             ccccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCcc
Q 025708           83 KKDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGP  153 (249)
Q Consensus        83 ~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~  153 (249)
                      ..+++|....|.|+|.|++|++|+.++.+ .+||||++.+-.     .+++|.+.+++.||+|||+|.|.|+.   ....
T Consensus       288 ~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~  367 (421)
T KOG1028|consen  288 LLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVS  367 (421)
T ss_pred             EEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeE
Confidence            44677888899999999999999999887 889999999822     35789999999999999999999876   3457


Q ss_pred             EEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          154 VKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       154 L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      |.|+|||++.++++++||++.+....--.+..++..+....+.++..|..|
T Consensus       368 l~l~V~d~d~~~~~~~iG~~~lG~~~~~~~~~hW~~m~~~p~~pv~~wh~l  418 (421)
T KOG1028|consen  368 LELTVWDHDTLGSNDLIGRCILGSDSTGEEVRHWQEMLNSPRKPVAQWHSL  418 (421)
T ss_pred             EEEEEEEcccccccceeeEEEecCCCCchHHHHHHHHHhCccCceeeeEec
Confidence            999999999999999999999988762222333333333456777777653

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.54  E-value=1.9e-14  Score=130.43  Aligned_cols=101  Identities=27%  Similarity=0.438  Sum_probs=89.5

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCee
Q 025708           93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM  170 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~i  170 (249)
                      ..|.|.|.+|+||+..+.. ..||||.|.++... .+|.++.+++.|.|.|+|.|.++..-..|.|.|||.| +++|+.|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I   83 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII   83 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence            4689999999999999876 89999999998754 8999999999999999999999998899999999999 8999999


Q ss_pred             EEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          171 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       171 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      |.+.|.-++|..-            ...+.||.|+.
T Consensus        84 GKvai~re~l~~~------------~~~d~W~~L~~  107 (800)
T KOG2059|consen   84 GKVAIKREDLHMY------------PGKDTWFSLQP  107 (800)
T ss_pred             ceeeeeHHHHhhC------------CCCccceeccc
Confidence            9999998888432            24678998654

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.47  E-value=5.4e-13  Score=100.53  Aligned_cols=90  Identities=28%  Similarity=0.335  Sum_probs=76.5

Q ss_pred             EEEEEEEeecCCCCCC---C--CCCcEEEEEECC---eEEeeeeecCcCC--ceeeeeEEEEeeC---------------
Q 025708           95 LKVKVVKGINLAIRDM---M--SSDPYVVLRLGQ---QTVQTTIVKSNLN--PVWNEELMLSVPQ---------------  149 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~---~--~~dpyv~v~l~~---~~~kT~~~~~t~~--P~W~e~f~f~v~~---------------  149 (249)
                      |+|.|.+|++++..+.   +  .+||||++.+.+   .+++|.++.+++|  |.||++|.|++..               
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            7999999999775443   2  489999999954   4689999999999  9999999998654               


Q ss_pred             ---------CCccEEEEEEecCCCCCCCeeEEEEEechhhhhhh
Q 025708          150 ---------EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSA  184 (249)
Q Consensus       150 ---------~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~  184 (249)
                               ....|.|+|||.|.+++|++||.+.++|..+..+.
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                     13579999999999999999999999999986553

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.46  E-value=1.1e-12  Score=93.38  Aligned_cols=91  Identities=38%  Similarity=0.694  Sum_probs=80.2

Q ss_pred             EEEEEEEEeecCCCCCCC-CCCcEEEEEECCe---EEeeeeecCcCCceeeeeEEEEeeCC-CccEEEEEEecCCCCCCC
Q 025708           94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ---TVQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEVFDHDTFSADD  168 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~---~~kT~~~~~t~~P~W~e~f~f~v~~~-~~~L~i~V~d~~~~~~d~  168 (249)
                      .|.|.|++|++|...... ..+|||++.+...   ..+|+++.++.+|.|+|+|.|.+... ...|.|+|||.+..+.+.
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~   80 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD   80 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence            378999999999887764 7899999999764   79999999999999999999999875 789999999999877789


Q ss_pred             eeEEEEEechhhhhhh
Q 025708          169 IMGEAEIDIQPLLTSA  184 (249)
Q Consensus       169 ~iG~~~i~l~~l~~~~  184 (249)
                      ++|.+.+++.++..+.
T Consensus        81 ~~G~~~~~l~~~~~~~   96 (101)
T smart00239       81 FIGQVTIPLSDLLLGG   96 (101)
T ss_pred             eeEEEEEEHHHcccCc
Confidence            9999999999986553

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd00030 C2 C2 domain

Probab=99.44  E-value=1.6e-12  Score=92.05  Aligned_cols=87  Identities=46%  Similarity=0.786  Sum_probs=78.3

Q ss_pred             EEEEEEEeecCCCCCCC-CCCcEEEEEECC-eEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCeeE
Q 025708           95 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMG  171 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~iG  171 (249)
                      |.|.|++|++|...... ..+|||.+.+.. ...+|.+..++.+|.|++.|.|.+.. ....|.|+||+++..+.+.+||
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            57899999999875544 789999999987 78999999999999999999999987 5678999999999887789999


Q ss_pred             EEEEechhhh
Q 025708          172 EAEIDIQPLL  181 (249)
Q Consensus       172 ~~~i~l~~l~  181 (249)
                      .+.+++..+.
T Consensus        81 ~~~~~l~~l~   90 (102)
T cd00030          81 EVEIPLSELL   90 (102)
T ss_pred             EEEEeHHHhh
Confidence            9999999996

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02270 phospholipase D alpha

Probab=99.40  E-value=4.6e-12  Score=118.73  Aligned_cols=125  Identities=18%  Similarity=0.354  Sum_probs=101.1

Q ss_pred             eeeEEEEEEEEeecCCCCC-----------------C--CCCCcEEEEEECCeE-EeeeeecCc-CCceeeeeEEEEeeC
Q 025708           91 FIGLLKVKVVKGINLAIRD-----------------M--MSSDPYVVLRLGQQT-VQTTIVKSN-LNPVWNEELMLSVPQ  149 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~-----------------~--~~~dpyv~v~l~~~~-~kT~~~~~t-~~P~W~e~f~f~v~~  149 (249)
                      .-|.|.|+|.+|++|+..+                 .  ..+||||.|.+++.+ .+|+++.+. .||.|+|.|.+.+..
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah   85 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH   85 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence            4689999999999998631                 1  157999999998765 699999885 699999999999998


Q ss_pred             CCccEEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEE
Q 025708          150 EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLK  229 (249)
Q Consensus       150 ~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~  229 (249)
                      ....+.|+|.|.+.++. .+||.+.||+.+++.            +..+++||++.+.           +|+.       
T Consensus        86 ~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~------------g~~i~~~~~~~~~-----------~~~p-------  134 (808)
T PLN02270         86 MASNIIFTVKDDNPIGA-TLIGRAYIPVEEILD------------GEEVDRWVEILDN-----------DKNP-------  134 (808)
T ss_pred             CcceEEEEEecCCccCc-eEEEEEEEEHHHhcC------------CCccccEEeccCC-----------CCCc-------
Confidence            77899999999999876 599999999999954            3468999995442           2332       


Q ss_pred             eccccCceEEEEEEEEeCC
Q 025708          230 LQNVESGELELELEWMPLD  248 (249)
Q Consensus       230 l~~~~~G~i~l~l~~~~~~  248 (249)
                        ....-+||++|+|.|+.
T Consensus       135 --~~~~~~~~~~~~f~~~~  151 (808)
T PLN02270        135 --IHGGSKIHVKLQYFEVT  151 (808)
T ss_pred             --CCCCCEEEEEEEEEEcc
Confidence              11245899999999975

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.38  E-value=2.4e-12  Score=114.94  Aligned_cols=114  Identities=30%  Similarity=0.510  Sum_probs=98.5

Q ss_pred             eeEEEEEEEEeecCCCCCCC--CCCcEEEEEECCeEEeeeeecCcCCceee-eeEEEEeeC---CCccEEEEEEecCCCC
Q 025708           92 IGLLKVKVVKGINLAIRDMM--SSDPYVVLRLGQQTVQTTIVKSNLNPVWN-EELMLSVPQ---EYGPVKLEVFDHDTFS  165 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l~~~~~kT~~~~~t~~P~W~-e~f~f~v~~---~~~~L~i~V~d~~~~~  165 (249)
                      .|.|.|.|..|++||.+|..  ..|.||.+.++...++|.+..+++||.|| +.|.|+|.+   .+.+|.|+++|+|..+
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys   81 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS   81 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence            37889999999999999986  78999999999999999999999999999 789999977   4679999999999999


Q ss_pred             CCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          166 ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       166 ~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                      .+|-||.+.|+++.|.-+....  .-..++..+.+|||..+-
T Consensus        82 andaigkv~i~idpl~~e~aaq--avhgkgtvisgw~pifdt  121 (1169)
T KOG1031|consen   82 ANDAIGKVNIDIDPLCLEEAAQ--AVHGKGTVISGWFPIFDT  121 (1169)
T ss_pred             cccccceeeeccChHHHHhHHh--hhcCCceEEeeeeeccee
Confidence            9999999999999986443221  112568899999997664

>PLN02223 phosphoinositide phospholipase C

Probab=99.37  E-value=8.8e-12  Score=112.52  Aligned_cols=96  Identities=23%  Similarity=0.458  Sum_probs=78.7

Q ss_pred             eeEEEEEEEEeecCCCC-----CCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeCC-CccEEEEEE
Q 025708           92 IGLLKVKVVKGINLAIR-----DMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEVF  159 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~-----~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~~-~~~L~i~V~  159 (249)
                      ...|+|+|+.|.+++..     +.. .+||||+|.+.+     ..++|.+..++.||+|||+|.|.+..+ -..|+|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            46799999999987521     122 679999999943     356788888899999999999998764 456899999


Q ss_pred             ecCCCCCCCeeEEEEEechhhhhhhhhc
Q 025708          160 DHDTFSADDIMGEAEIDIQPLLTSALAF  187 (249)
Q Consensus       160 d~~~~~~d~~iG~~~i~l~~l~~~~~~~  187 (249)
                      |+|..+.++|+|+..+|+..|..+.++.
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~GyR~V  515 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEGIRAV  515 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCCceeE
Confidence            9999888999999999999998776443

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.31  E-value=2e-11  Score=116.59  Aligned_cols=96  Identities=27%  Similarity=0.548  Sum_probs=85.6

Q ss_pred             cceeeeEEEEEEEEeecCCCCCC---CCCCcEEEEEECCe-EEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCC
Q 025708           88 MVEFIGLLKVKVVKGINLAIRDM---MSSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDT  163 (249)
Q Consensus        88 ~~~~~g~L~V~v~~a~~L~~~~~---~~~dpyv~v~l~~~-~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~  163 (249)
                      .....|+|.|+|.+|++|...+.   ...|||+++.+... ..+|++.+++.||+|||+|.+.+......|.++|||.+.
T Consensus       431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~  510 (1227)
T COG5038         431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS  510 (1227)
T ss_pred             cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence            55678999999999999998883   38999999998543 469999999999999999999998877899999999998


Q ss_pred             CCCCCeeEEEEEechhhhhh
Q 025708          164 FSADDIMGEAEIDIQPLLTS  183 (249)
Q Consensus       164 ~~~d~~iG~~~i~l~~l~~~  183 (249)
                      +.+|+.+|++.++|..|...
T Consensus       511 ~~sd~vvG~~~l~L~~L~~~  530 (1227)
T COG5038         511 FKSDKVVGSTQLDLALLHQN  530 (1227)
T ss_pred             cCCcceeeeEEechHHhhhc
Confidence            89999999999999988644

>PLN02952 phosphoinositide phospholipase C

Probab=99.28  E-value=7.6e-11  Score=108.48  Aligned_cols=93  Identities=25%  Similarity=0.344  Sum_probs=77.2

Q ss_pred             eeEEEEEEEEeecCCCCC------CC-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEEeeCC-CccEEEEE
Q 025708           92 IGLLKVKVVKGINLAIRD------MM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEV  158 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~------~~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~v~~~-~~~L~i~V  158 (249)
                      ...|+|.|+.|.+|+...      .. ..||||+|.+-     ..+.+|+++.++.||+|||+|.|.+..+ -..|.|.|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            468999999999875321      11 35999999983     3567999999999999999999998763 35689999


Q ss_pred             EecCCCCCCCeeEEEEEechhhhhhh
Q 025708          159 FDHDTFSADDIMGEAEIDIQPLLTSA  184 (249)
Q Consensus       159 ~d~~~~~~d~~iG~~~i~l~~l~~~~  184 (249)
                      ||+|..+.++|+|.+.+||..|..+.
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy  574 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI  574 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc
Confidence            99999888999999999999997664

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.26  E-value=1.1e-11  Score=118.29  Aligned_cols=103  Identities=37%  Similarity=0.533  Sum_probs=93.5

Q ss_pred             CccccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCe-EEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEE
Q 025708           82 QKKDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEV  158 (249)
Q Consensus        82 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~-~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V  158 (249)
                      ...+..+.+..|-|+|.+..|.||+..+.+ .+||||++.+... .++|+++++|+||+|||.|.++|.. ....+.|.|
T Consensus      1029 ~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v 1108 (1227)
T COG5038        1029 KLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINV 1108 (1227)
T ss_pred             ccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEE
Confidence            566777888899999999999999999987 6999999999776 6899999999999999999999986 667899999


Q ss_pred             EecCCCCCCCeeEEEEEechhhhhhh
Q 025708          159 FDHDTFSADDIMGEAEIDIQPLLTSA  184 (249)
Q Consensus       159 ~d~~~~~~d~~iG~~~i~l~~l~~~~  184 (249)
                      +|||...+++.||.+.++|..+..+.
T Consensus      1109 ~Dwd~~~knd~lg~~~idL~~l~~~~ 1134 (1227)
T COG5038        1109 NDWDSGEKNDLLGTAEIDLSKLEPGG 1134 (1227)
T ss_pred             eecccCCCccccccccccHhhcCcCC
Confidence            99999999999999999999996554

>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]

Probab=99.25  E-value=3.1e-12  Score=106.44  Aligned_cols=55  Identities=45%  Similarity=0.808  Sum_probs=46.4

Q ss_pred             CccccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccCCccccCCCCC
Q 025708            1 MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKP   59 (249)
Q Consensus         1 ~~~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~~~~ss~~   59 (249)
                      |..+ ||..||++||++||+.|.+|++++   .+|+|||+|||.++|+++.....+..+
T Consensus        81 m~~~-GN~~an~~~ea~~p~~~~~p~~d~---~~e~FIR~KYE~kkf~~~~~~~~s~~~  135 (287)
T KOG0703|consen   81 MISM-GNAKANSYYEAKLPDPFRRPGPDD---LVEQFIRDKYERKKFLDPEEDITSKPG  135 (287)
T ss_pred             HHHH-cchhhhhhccccCCccccCCChHH---HHHHHHHHHHhhhhhccchhhcccCCC
Confidence            4455 899999999999999999999987   889999999999999998743343333

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=99.24  E-value=4.7e-11  Score=110.07  Aligned_cols=95  Identities=24%  Similarity=0.414  Sum_probs=79.5

Q ss_pred             EEEEEEEEeecCCCCCC----C-CCCcEEEEEECC-----eEEeee-eecCcCCceeeeeEEEEeeC-CCccEEEEEEec
Q 025708           94 LLKVKVVKGINLAIRDM----M-SSDPYVVLRLGQ-----QTVQTT-IVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDH  161 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~----~-~~dpyv~v~l~~-----~~~kT~-~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~  161 (249)
                      +|+|.|+.+.++++...    + ..||||.|++.+     ...+|+ +..++.+|.|+|+|+|.+.. +-..|+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            79999999997765422    2 679999999843     347899 56678999999999999987 446789999999


Q ss_pred             CCCCCCCeeEEEEEechhhhhhhhhcC
Q 025708          162 DTFSADDIMGEAEIDIQPLLTSALAFG  188 (249)
Q Consensus       162 ~~~~~d~~iG~~~i~l~~l~~~~~~~~  188 (249)
                      |..++|||+|+..+|+.+|..+.++..
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRhVp  723 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRHVP  723 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceeeee
Confidence            999999999999999999988876653

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.24  E-value=9.1e-11  Score=107.82  Aligned_cols=96  Identities=25%  Similarity=0.408  Sum_probs=79.4

Q ss_pred             eeEEEEEEEEeecCCCC------CCC-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEE
Q 025708           92 IGLLKVKVVKGINLAIR------DMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEV  158 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~------~~~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V  158 (249)
                      ..+|.|+|+.+.+++..      +.. ..||||+|.+-     ..+.+|++..++.||.|||+|.|.+.. +-..|+|.|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46899999999987521      112 47999999983     245789999999999999999999776 346789999


Q ss_pred             EecCCCCCCCeeEEEEEechhhhhhhhhc
Q 025708          159 FDHDTFSADDIMGEAEIDIQPLLTSALAF  187 (249)
Q Consensus       159 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~  187 (249)
                      +|+|..+.|+|+|+..+|+..|..+.++.
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V  576 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGIHAV  576 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCccceE
Confidence            99999889999999999999998876554

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.21  E-value=2.5e-10  Score=104.84  Aligned_cols=96  Identities=23%  Similarity=0.353  Sum_probs=78.8

Q ss_pred             eeEEEEEEEEeecCC--CC--CC--C-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEE
Q 025708           92 IGLLKVKVVKGINLA--IR--DM--M-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEV  158 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~--~~--~~--~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V  158 (249)
                      ...|+|+|+.+.+++  ..  ..  . ..||||+|.+.     ..+.+|+++.++.||+|+|+|.|.+.. +-..|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            467999999998753  11  11  1 57999999993     345799999999999999999999776 346789999


Q ss_pred             EecCCCCCCCeeEEEEEechhhhhhhhhc
Q 025708          159 FDHDTFSADDIMGEAEIDIQPLLTSALAF  187 (249)
Q Consensus       159 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~  187 (249)
                      ||+|..+.++|||+..+|+..|..+.++.
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR~V  559 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGIRAF  559 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCccceE
Confidence            99998888999999999999998876544

>PLN02228 Phosphoinositide phospholipase C

Probab=99.18  E-value=4.3e-10  Score=102.96  Aligned_cols=96  Identities=21%  Similarity=0.338  Sum_probs=78.5

Q ss_pred             eeEEEEEEEEeecCCC---CCC---C-CCCcEEEEEEC-----CeEEeeeeecCcCCcee-eeeEEEEeeC-CCccEEEE
Q 025708           92 IGLLKVKVVKGINLAI---RDM---M-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVW-NEELMLSVPQ-EYGPVKLE  157 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~---~~~---~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W-~e~f~f~v~~-~~~~L~i~  157 (249)
                      ...|+|+|+.|++|+.   .+.   . ..||||+|.+.     ..+++|+++.++.||.| +|+|.|.+.. +-..|+|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            4579999999998732   111   2 47999999983     24579999999999999 9999999876 34678999


Q ss_pred             EEecCCCCCCCeeEEEEEechhhhhhhhhc
Q 025708          158 VFDHDTFSADDIMGEAEIDIQPLLTSALAF  187 (249)
Q Consensus       158 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~  187 (249)
                      |+|+|..+.++|+|+..+|+..|..+.++.
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~GYR~V  539 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSGVRAV  539 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCCeeEE
Confidence            999998889999999999999998776544

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.12  E-value=4.7e-10  Score=80.03  Aligned_cols=89  Identities=13%  Similarity=0.227  Sum_probs=74.5

Q ss_pred             EEEEEEEeecCCCCC---CC-CCCcEEEEEECCe-EEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCe
Q 025708           95 LKVKVVKGINLAIRD---MM-SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDI  169 (249)
Q Consensus        95 L~V~v~~a~~L~~~~---~~-~~dpyv~v~l~~~-~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~  169 (249)
                      |+|+|..|+++...+   .. .+||||.+.++.. +.+|++.   .||.|||+|.|++. ....+.|+|||... ...-.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P   75 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP   75 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence            689999999998777   33 7899999999876 7888874   79999999999995 46789999999865 35568


Q ss_pred             eEEEEEechhhhhhhhhcC
Q 025708          170 MGEAEIDIQPLLTSALAFG  188 (249)
Q Consensus       170 iG~~~i~l~~l~~~~~~~~  188 (249)
                      ||..-+.|+++..+.+...
T Consensus        76 i~llW~~~sdi~Ee~Rrkk   94 (109)
T cd08689          76 VGLLWLRLSDIAEEIRKKK   94 (109)
T ss_pred             eeeehhhHHHHHHHHHHHH
Confidence            9999999999988765553

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.05  E-value=4.3e-11  Score=109.27  Aligned_cols=95  Identities=31%  Similarity=0.445  Sum_probs=83.2

Q ss_pred             ccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCe-------EEeeeeecCcCCceeeeeEEEEeeCC-----Ccc
Q 025708           87 GMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-------TVQTTIVKSNLNPVWNEELMLSVPQE-----YGP  153 (249)
Q Consensus        87 ~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~-------~~kT~~~~~t~~P~W~e~f~f~v~~~-----~~~  153 (249)
                      .|.-....|.|.|+.|+++.+.|.+ .+||||+|.+...       .++|+|+.+|+||+|+|+|.|.|+.+     ...
T Consensus       941 ~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am 1020 (1103)
T KOG1328|consen  941 YYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAM 1020 (1103)
T ss_pred             EeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccce
Confidence            3444557899999999999999886 8999999999763       47999999999999999999999772     457


Q ss_pred             EEEEEEecCCCCCCCeeEEEEEechhhh
Q 025708          154 VKLEVFDHDTFSADDIMGEAEIDIQPLL  181 (249)
Q Consensus       154 L~i~V~d~~~~~~d~~iG~~~i~l~~l~  181 (249)
                      |.|+|+|+|-++.+||-|++.+.|.++.
T Consensus      1021 ~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1021 LHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             EEEEeeccceecccccchHHHHhhCCCC
Confidence            9999999999999999999999998874

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=99.00  E-value=1.6e-09  Score=100.31  Aligned_cols=94  Identities=21%  Similarity=0.402  Sum_probs=79.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----eE-EeeeeecCcCCceee-eeEEEEeeC-CCccEEEEEEecCCC
Q 025708           93 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QT-VQTTIVKSNLNPVWN-EELMLSVPQ-EYGPVKLEVFDHDTF  164 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~-~kT~~~~~t~~P~W~-e~f~f~v~~-~~~~L~i~V~d~~~~  164 (249)
                      ..|.|.|+.|++|+..+.+...|||.|.+-+     .+ ++|.++.+++||+|+ |.|+|.|.. .-.-|+|.|||.|.+
T Consensus      1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred             eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence            6789999999999976666677999999832     34 455667789999999 999999987 446799999999999


Q ss_pred             CCCCeeEEEEEechhhhhhhhh
Q 025708          165 SADDIMGEAEIDIQPLLTSALA  186 (249)
Q Consensus       165 ~~d~~iG~~~i~l~~l~~~~~~  186 (249)
                      +...|||++..|+..+..+-+.
T Consensus      1145 s~~~FiaqA~yPv~~ik~GfRs 1166 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGFRS 1166 (1267)
T ss_pred             CCcceeeeeecchhhhhcccee
Confidence            9889999999999999776543

>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF

Probab=98.97  E-value=4.5e-10  Score=82.53  Aligned_cols=51  Identities=31%  Similarity=0.521  Sum_probs=44.7

Q ss_pred             ccccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccCCcc
Q 025708            2 IEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSL   52 (249)
Q Consensus         2 ~~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~   52 (249)
                      ++.+||..+|++||+++|....+|.+.+..+.+++||++||++++|+.+..
T Consensus        59 ~~~~GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~~fI~~KY~~k~f~~~~~  109 (112)
T smart00105       59 LQKGGNENANSIWESNLDDFSLKPPDSDDQQKYESFIAAKYEEKLFVPPES  109 (112)
T ss_pred             HHHhhhHHHHHHHHhhCCccccCCCCCchHHHHHHHHHHHHHhhhcccccc
Confidence            456799999999999999887777777778899999999999999987654

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.

>PLN02352 phospholipase D epsilon

Probab=98.94  E-value=1.2e-08  Score=95.81  Aligned_cols=118  Identities=17%  Similarity=0.337  Sum_probs=88.5

Q ss_pred             eeeEEEEEEEEeecCCCC----CC-C-CCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCC-ccEEEEEEecC
Q 025708           91 FIGLLKVKVVKGINLAIR----DM-M-SSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEY-GPVKLEVFDHD  162 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~----~~-~-~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~-~~L~i~V~d~~  162 (249)
                      .-|+|.++|.+|+-+...    .. + ..||||.|.+++.+ .+|   .+..||+|+|.|.+.+.... ..+.|+|-|  
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence            458999999999843322    11 1 33999999998765 577   56679999999999998865 689999988  


Q ss_pred             CCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEE
Q 025708          163 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELEL  242 (249)
Q Consensus       163 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l  242 (249)
                         .-.+||.+.||+.+++.+           ...+++||++.+.           +|+.       +   ...+|+++|
T Consensus        83 ---~~~~ig~~~~p~~~~~~g-----------~~~~~~~~~~~~~-----------~~~p-------~---~~~~~~~~~  127 (758)
T PLN02352         83 ---KCSILGRFHIQAHQIVTE-----------ASFINGFFPLIME-----------NGKP-------N---PELKLRFML  127 (758)
T ss_pred             ---CCeEEEEEEEEHHHhhCC-----------CcccceEEEcccC-----------CCCC-------C---CCCEEEEEE
Confidence               257999999999999653           2348899995442           2332       1   226999999


Q ss_pred             EEEeCC
Q 025708          243 EWMPLD  248 (249)
Q Consensus       243 ~~~~~~  248 (249)
                      +|.|+.
T Consensus       128 ~~~~~~  133 (758)
T PLN02352        128 WFRPAE  133 (758)
T ss_pred             EEEEhh
Confidence            999975

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.93  E-value=8.9e-10  Score=105.24  Aligned_cols=103  Identities=21%  Similarity=0.339  Sum_probs=84.8

Q ss_pred             eeeEEEEEEEEeecCCCCCC-CCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEE-eeC---CCccEEEEEEe
Q 025708           91 FIGLLKVKVVKGINLAIRDM-MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKLEVFD  160 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~~-~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~-v~~---~~~~L~i~V~d  160 (249)
                      ..|+|+|.|.-|++|+.... ..+||||++++..     .++||+++++|.+|.|||.+.+. .+.   ..+.|.++||.
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence            37999999999999965444 4899999999943     35899999999999999999988 333   34789999999


Q ss_pred             cCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecC
Q 025708          161 HDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD  205 (249)
Q Consensus       161 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~  205 (249)
                      .+.+..+.++|.+.|+|.++-...            ...+||++.
T Consensus      1602 ~~~~~en~~lg~v~i~L~~~~l~k------------E~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLK------------ESVGWYNLG 1634 (1639)
T ss_pred             ccceeeeeeeeeeecchhhcchhh------------hhcceeecc
Confidence            999988999999999999884332            334899854

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.90  E-value=2.8e-10  Score=104.05  Aligned_cols=123  Identities=26%  Similarity=0.500  Sum_probs=94.2

Q ss_pred             eeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-------------e------------------EEeeeeecCcCCce
Q 025708           91 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-------------Q------------------TVQTTIVKSNLNPV  138 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-------------~------------------~~kT~~~~~t~~P~  138 (249)
                      +...|.|.+.+|++|..++.+ .+|||+.+.+..             +                  .+-|.+.++|+||.
T Consensus       112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk  191 (1103)
T KOG1328|consen  112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK  191 (1103)
T ss_pred             CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence            445677889999999999886 899999988711             0                  13477888999999


Q ss_pred             eeeeEEEEeeC-CCccEEEEEEecCCC---------------------------------C---CCCeeEEEEEechhhh
Q 025708          139 WNEELMLSVPQ-EYGPVKLEVFDHDTF---------------------------------S---ADDIMGEAEIDIQPLL  181 (249)
Q Consensus       139 W~e~f~f~v~~-~~~~L~i~V~d~~~~---------------------------------~---~d~~iG~~~i~l~~l~  181 (249)
                      |+|.|.|.|.+ ....+.+.+||+|.-                                 +   .|||+|++.|||.++.
T Consensus       192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP  271 (1103)
T KOG1328|consen  192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP  271 (1103)
T ss_pred             hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence            99999999988 567899999999731                                 2   3899999999999995


Q ss_pred             hhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEec
Q 025708          182 TSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQ  231 (249)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~  231 (249)
                      ..             .++.||.+..     .+.-+-..|.++..+||.-.
T Consensus       272 ~~-------------Gld~WFkLep-----RS~~S~VqG~~~LklwLsT~  303 (1103)
T KOG1328|consen  272 PD-------------GLDQWFKLEP-----RSDKSKVQGQVKLKLWLSTK  303 (1103)
T ss_pred             cc-------------hHHHHhccCc-----ccccccccceEEEEEEEeee
Confidence            44             3788997544     34445566777666666443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.90  E-value=1.2e-09  Score=97.72  Aligned_cols=52  Identities=40%  Similarity=0.629  Sum_probs=46.1

Q ss_pred             cccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccCCccccC
Q 025708            3 EVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIA   55 (249)
Q Consensus         3 ~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~~~~   55 (249)
                      ..+||+.||++||..+ .+..||+++++++++|+|||+||+.+.|..|.....
T Consensus       570 ~aiGN~~AN~vWE~~~-~G~~KPs~~s~REEkErwIr~KYeqklFLaPl~~te  621 (749)
T KOG0705|consen  570 SAIGNDLANSVWEGSS-QGQTKPSPDSSREEKERWIRAKYEQKLFLAPLPCTE  621 (749)
T ss_pred             HHhhhhHHHHHhhhhc-cCCcCCCccccHHHHHHHHHHHHHHHhhcCCCCCCC
Confidence            3469999999999966 788999999999999999999999999998765433

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.81  E-value=3.7e-09  Score=99.78  Aligned_cols=117  Identities=26%  Similarity=0.358  Sum_probs=94.5

Q ss_pred             cccccccccccccccCCC-----Cccc-----ccc-ceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeE--Eeee
Q 025708           64 QSSFSRKIIDSFRSTNSS-----QKKD-----VGM-VEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT--VQTT  129 (249)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~-----~~~~-----~~~-~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~--~kT~  129 (249)
                      .....|.+++.++++..+     +...     ... .+....++|+|++|.+|.+.|.+ .+|||+++.+|++.  -++.
T Consensus       573 e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~  652 (1105)
T KOG1326|consen  573 EQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAH  652 (1105)
T ss_pred             ccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhh
Confidence            345667888888877654     1111     111 23446788999999999999986 99999999999877  5788


Q ss_pred             eecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCeeEEEEEechhh
Q 025708          130 IVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMGEAEIDIQPL  180 (249)
Q Consensus       130 ~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l  180 (249)
                      .+.+|+||+|++.|.+.+.. ....|.++|||+|.++.|+.||+..++|++-
T Consensus       653 yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEnR  704 (1105)
T KOG1326|consen  653 YIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLENR  704 (1105)
T ss_pred             cCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhhc
Confidence            89999999999999988765 4578999999999999999999999999864

>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []

Probab=98.68  E-value=6.5e-09  Score=76.91  Aligned_cols=46  Identities=43%  Similarity=0.681  Sum_probs=40.4

Q ss_pred             cccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccC
Q 025708            3 EVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLK   49 (249)
Q Consensus         3 ~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~   49 (249)
                      ..+||..+|++||++ +....+|.++++.+.+++||++||+.++|+.
T Consensus        70 ~~~GN~~~n~~~e~~-~~~~~~~~~~~~~~~~~~fI~~KY~~k~f~~  115 (116)
T PF01412_consen   70 REGGNKRANSIWEAN-SPPPKKPPPSSDQEKREQFIRAKYVEKAFIS  115 (116)
T ss_dssp             HHSHHHHHHHHHTTT-STTTTTHCTTSHHHHHHHHHHHHHTTHTTS-
T ss_pred             HHHChHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHHHHHHHhhhhcc
Confidence            456999999999999 4556788899999999999999999999975

The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.63  E-value=1.3e-07  Score=69.76  Aligned_cols=98  Identities=23%  Similarity=0.414  Sum_probs=74.9

Q ss_pred             EEEEEEEeecCCCCC---------CC-----CCCcEEEEEE----CCeEEeeeeecCcCCceeeeeEEEEeeC-------
Q 025708           95 LKVKVVKGINLAIRD---------MM-----SSDPYVVLRL----GQQTVQTTIVKSNLNPVWNEELMLSVPQ-------  149 (249)
Q Consensus        95 L~V~v~~a~~L~~~~---------~~-----~~dpyv~v~l----~~~~~kT~~~~~t~~P~W~e~f~f~v~~-------  149 (249)
                      |.|.|.+|.||+...         ..     ..++||++.+    +...++|+++.++..|.|+..++|.++-       
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            468888998887321         11     4589999996    3466899999999999999999998762       


Q ss_pred             ---------CCccEEEEEEecCCC----------CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEe
Q 025708          150 ---------EYGPVKLEVFDHDTF----------SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK  203 (249)
Q Consensus       150 ---------~~~~L~i~V~d~~~~----------~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~  203 (249)
                               ....+.|+||+...-          ..|-+||.+.||+.+|+..           ...+.+|||
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~-----------rsGitGW~p  142 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK-----------RSGITGWYP  142 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc-----------ccCcccccc
Confidence                     135789999997542          2455899999999999754           334778987

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.58  E-value=1.1e-07  Score=87.21  Aligned_cols=95  Identities=17%  Similarity=0.275  Sum_probs=72.4

Q ss_pred             EEeecCCCCCCCCCCcEEEEEECCeE----EeeeeecCcCCceeeeeEEEEeeCC----------------CccEEEEEE
Q 025708          100 VKGINLAIRDMMSSDPYVVLRLGQQT----VQTTIVKSNLNPVWNEELMLSVPQE----------------YGPVKLEVF  159 (249)
Q Consensus       100 ~~a~~L~~~~~~~~dpyv~v~l~~~~----~kT~~~~~t~~P~W~e~f~f~v~~~----------------~~~L~i~V~  159 (249)
                      +.++++-+...+.+|||+.+...+..    .+|++.++|.+|.|+|.|.|.+...                -..|++++|
T Consensus       138 L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW  217 (800)
T KOG2059|consen  138 LKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLW  217 (800)
T ss_pred             hhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeec
Confidence            44455555555579999999985533    5999999999999999999988553                235889999


Q ss_pred             e-cCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          160 D-HDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       160 d-~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      + .+....++|+|++.+++..+..            ......||-+..
T Consensus       218 ~~~~~~~~~~FlGevrv~v~~~~~------------~s~p~~W~~Lqp  253 (800)
T KOG2059|consen  218 NDLNLVINDVFLGEVRVPVDVLRQ------------KSSPAAWYYLQP  253 (800)
T ss_pred             cchhhhhhhhhceeEEeehhhhhh------------ccCccceEEEec
Confidence            8 6666679999999999998852            224568987654

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=8.1e-08  Score=81.10  Aligned_cols=99  Identities=27%  Similarity=0.292  Sum_probs=83.3

Q ss_pred             CccccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCc
Q 025708           82 QKKDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYG  152 (249)
Q Consensus        82 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~  152 (249)
                      ...++.+.....-|.|++++|..|..+|.+ .+||||...+..     .+.+|.+.+++.+|.|+++|.|.+..   ...
T Consensus       222 i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~  301 (362)
T KOG1013|consen  222 ILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYK  301 (362)
T ss_pred             eeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcc
Confidence            345677777788999999999999999987 899999999853     34789999999999999999999877   346


Q ss_pred             cEEEEEEecCCCCCCCeeEEEEEechhh
Q 025708          153 PVKLEVFDHDTFSADDIMGEAEIDIQPL  180 (249)
Q Consensus       153 ~L~i~V~d~~~~~~d~~iG~~~i~l~~l  180 (249)
                      .+.|.|||.+.....+++|-+...+-..
T Consensus       302 kv~lsvgd~~~G~s~d~~GG~~~g~~rr  329 (362)
T KOG1013|consen  302 KVALSVGDYDIGKSNDSIGGSMLGGYRR  329 (362)
T ss_pred             eEEEeecccCCCcCccCCCccccccccc
Confidence            7899999999987889999877655544

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional

Probab=98.54  E-value=7.3e-08  Score=86.62  Aligned_cols=57  Identities=21%  Similarity=0.263  Sum_probs=46.1

Q ss_pred             ccccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccCCccccCCCC
Q 025708            2 IEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGK   58 (249)
Q Consensus         2 ~~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~~~~ss~   58 (249)
                      ++.+||..||+|||++++....++...++.+.+++|||+||++|+|+.......++.
T Consensus        76 Mk~gGN~~AN~iyeanw~~~~~~~P~~sD~e~lr~FIR~KYVeKRF~~~~~~d~p~~  132 (648)
T PLN03119         76 LQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQKKYAGANDADKPSK  132 (648)
T ss_pred             HHHhchHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhccCcCCCCCCcc
Confidence            345799999999999999876666666677788899999999999998765544443

>PLN03131 hypothetical protein; Provisional

Probab=98.44  E-value=1.6e-07  Score=85.15  Aligned_cols=54  Identities=19%  Similarity=0.220  Sum_probs=44.0

Q ss_pred             ccccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccCCccccC
Q 025708            2 IEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIA   55 (249)
Q Consensus         2 ~~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~~~~   55 (249)
                      ++.+||..||+|||++++....++..++..+.++.|||+||++|+|+.+.....
T Consensus        76 Mk~gGN~~AN~iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRFa~~~s~d~  129 (705)
T PLN03131         76 LQNGGNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGGKTHDK  129 (705)
T ss_pred             HHHhccHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhhhcCCCCCC
Confidence            345799999999999998766566566677788999999999999998664433

>PLN02964 phosphatidylserine decarboxylase

Probab=98.38  E-value=6.3e-07  Score=83.69  Aligned_cols=93  Identities=25%  Similarity=0.453  Sum_probs=78.0

Q ss_pred             cccceeeeEEEEEEEEeecCCCCCCCCCCcE-EEEEECCeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCC
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRDMMSSDPY-VVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDT  163 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpy-v~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~  163 (249)
                      ....++.|...+++++|+    ++.  .|+| +.+.+|.+.++|.+.++|.||+||+...|.+.. ......|.|||.+.
T Consensus        47 ~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (644)
T PLN02964         47 VSAEDFSGIALLTLVGAE----MKF--KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR  120 (644)
T ss_pred             eecccccCeEEEEeehhh----hcc--CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence            456678999999999997    332  3885 556779999999999999999999999999876 34457999999999


Q ss_pred             CCCCCeeEEEEEechhhhhhh
Q 025708          164 FSADDIMGEAEIDIQPLLTSA  184 (249)
Q Consensus       164 ~~~d~~iG~~~i~l~~l~~~~  184 (249)
                      ++.++++|.++++|..+....
T Consensus       121 ~s~n~lv~~~e~~~t~f~~kq  141 (644)
T PLN02964        121 LSKNTLVGYCELDLFDFVTQE  141 (644)
T ss_pred             CCHHHhhhheeecHhhccHHH
Confidence            999999999999988776553

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=7.8e-08  Score=81.18  Aligned_cols=100  Identities=21%  Similarity=0.317  Sum_probs=83.0

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC----CCccE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPV  154 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L  154 (249)
                      ..-|......+.++|.+|++|.+++.. ..|||+++.+..     .+.+|++..+++||.|+|+..+....    ....+
T Consensus        85 ~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~  164 (362)
T KOG1013|consen   85 ELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVL  164 (362)
T ss_pred             hhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhh
Confidence            344566678899999999999999987 899999999954     34788999999999999987776322    34568


Q ss_pred             EEEEEecCCCCCCCeeEEEEEechhhhhhh
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSA  184 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~  184 (249)
                      ++.|.|.+.+..++++|+..+++..+....
T Consensus       165 Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q  194 (362)
T KOG1013|consen  165 RKVVCDNDKKTHNESQGQSRVSLKKLKPLQ  194 (362)
T ss_pred             heeeccCcccccccCcccchhhhhccChhh
Confidence            899999999999999999999998886544

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=2.5e-06  Score=77.97  Aligned_cols=112  Identities=18%  Similarity=0.274  Sum_probs=89.2

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCcEEEEEE-CC------eEEeeeeecCcCCceeeeeEEEEeeCC----CccEEEEEEec
Q 025708           93 GLLKVKVVKGINLAIRDMMSSDPYVVLRL-GQ------QTVQTTIVKSNLNPVWNEELMLSVPQE----YGPVKLEVFDH  161 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l-~~------~~~kT~~~~~t~~P~W~e~f~f~v~~~----~~~L~i~V~d~  161 (249)
                      ..++|.|+.|.+|.-...+.--|||.+.+ |+      .++.|++..++..|.+||+|.|.+..+    .-.|.|.|-|+
T Consensus      1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred             ceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence            46889999999998776666689999998 22      347788899999999999999998763    23588999888


Q ss_pred             CCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCcee
Q 025708          162 DTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTIN  216 (249)
Q Consensus       162 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~  216 (249)
                      --...|..+|.+.++|.++...+            ..+.|+|+..+...+++.+.
T Consensus      1205 CFAReDRvvGl~VlqL~~va~kG------------S~a~W~pLgrrihmDeTGLt 1247 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKG------------SCACWVPLGRRIHMDETGLT 1247 (1283)
T ss_pred             eeecccceeeeeeeehhhHhhcC------------ceeEeeeccccccccccchh
Confidence            87767889999999999996543            57789998777555555443

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=4.5e-07  Score=77.85  Aligned_cols=110  Identities=19%  Similarity=0.315  Sum_probs=88.8

Q ss_pred             ccceeeeEEEEEEEEeecCCCCCCC--CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEE
Q 025708           87 GMVEFIGLLKVKVVKGINLAIRDMM--SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF  159 (249)
Q Consensus        87 ~~~~~~g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~  159 (249)
                      ......|.|.|.|++|++|..+...  .++|||+|++-.     .+.+|+...+|++|.+.+...|.-......|.++||
T Consensus       263 ~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~  342 (405)
T KOG2060|consen  263 ALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVW  342 (405)
T ss_pred             hhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEe
Confidence            3445578999999999999877654  789999999833     347899999999999999999998888889999999


Q ss_pred             -ecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          160 -DHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       160 -d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                       |+.++..+.|+|.+.+-+.+|-.           ......+||++...
T Consensus       343 gdygRmd~k~fmg~aqi~l~eL~l-----------s~~~~igwyKlfgs  380 (405)
T KOG2060|consen  343 GDYGRMDHKSFMGVAQIMLDELNL-----------SSSPVIGWYKLFGS  380 (405)
T ss_pred             ccccccchHHHhhHHHHHhhhhcc-----------ccccceeeeeccCC
Confidence             56777778899999999888832           22357789987664

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.08  E-value=5.7e-06  Score=56.97  Aligned_cols=86  Identities=12%  Similarity=0.171  Sum_probs=66.2

Q ss_pred             EEEEEEeecCCCCCCC--CCCcEEEEEE--C-CeEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCCCCC
Q 025708           96 KVKVVKGINLAIRDMM--SSDPYVVLRL--G-QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSAD  167 (249)
Q Consensus        96 ~V~v~~a~~L~~~~~~--~~dpyv~v~l--~-~~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~~~d  167 (249)
                      -|+++.|++|.-....  .+.-|++--+  . ...+||...+...||+|.|+|.|.+..   ..-.|.|.|+..  ..+.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~--~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ--TPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc--CCcc
Confidence            3788999999765543  4455766444  3 345899999999999999999999765   445788999983  3477


Q ss_pred             CeeEEEEEechhhhhh
Q 025708          168 DIMGEAEIDIQPLLTS  183 (249)
Q Consensus       168 ~~iG~~~i~l~~l~~~  183 (249)
                      +.||.+.+.|+++..+
T Consensus        80 e~iG~~sL~l~s~gee   95 (103)
T cd08684          80 RTIGECSLSLRTLSTQ   95 (103)
T ss_pred             ceeeEEEeecccCCHH
Confidence            8999999999998554

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.75  E-value=4.6e-06  Score=79.44  Aligned_cols=88  Identities=20%  Similarity=0.331  Sum_probs=74.1

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC----------CCccEEEEEEec
Q 025708           93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ----------EYGPVKLEVFDH  161 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~----------~~~~L~i~V~d~  161 (249)
                      -.++++|.+|+.|...+.. .+|||+.+.+.++.+.|.++.+|++|.|+++..|.-..          ....+.|+|||.
T Consensus       206 ~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~  285 (1105)
T KOG1326|consen  206 SPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL  285 (1105)
T ss_pred             hhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence            4577888999999998876 89999999999999999999999999999999986211          124578999999


Q ss_pred             CCCCCCCeeEEEEEechhh
Q 025708          162 DTFSADDIMGEAEIDIQPL  180 (249)
Q Consensus       162 ~~~~~d~~iG~~~i~l~~l  180 (249)
                      ++.+.++|+|+......-.
T Consensus       286 dr~g~~ef~gr~~~~p~V~  304 (1105)
T KOG1326|consen  286 DRSGINEFKGRKKQRPYVM  304 (1105)
T ss_pred             hhhchHHhhcccccceEEE
Confidence            9999999999987654433

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.71  E-value=2.2e-05  Score=68.42  Aligned_cols=92  Identities=22%  Similarity=0.390  Sum_probs=71.9

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCcEEEEEE-----CCeEEeeeeecCcCCceeeeeEEEEeeC---C---------CccE
Q 025708           93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ---E---------YGPV  154 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~kT~~~~~t~~P~W~e~f~f~v~~---~---------~~~L  154 (249)
                      ..|.+.|+++.+++..... ..|-|+.+.+     ..++.+|.+++.|.+|.|+|.|.+.+..   .         ...+
T Consensus       367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~  446 (523)
T KOG3837|consen  367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK  446 (523)
T ss_pred             hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence            4577888888888765432 5678998887     2356789999999999999999998866   1         2468


Q ss_pred             EEEEEecCCC-CCCCeeEEEEEechhhhhhh
Q 025708          155 KLEVFDHDTF-SADDIMGEAEIDIQPLLTSA  184 (249)
Q Consensus       155 ~i~V~d~~~~-~~d~~iG~~~i~l~~l~~~~  184 (249)
                      +|++|++..| .+|.++|.+.+.|..|....
T Consensus       447 kfeifhkggf~rSdkl~gt~nikle~Len~c  477 (523)
T KOG3837|consen  447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMC  477 (523)
T ss_pred             eEEEeeccccccccceeceeeeeehhhhccc
Confidence            9999998865 45789999999999884443

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.46  E-value=0.00034  Score=63.60  Aligned_cols=83  Identities=27%  Similarity=0.500  Sum_probs=66.6

Q ss_pred             EEEeecCCCCCCC-CCCcEEEEEEC--C----eEEeeeeecCcCCceeeeeEEEEeeC-----CCccEEEEEEecCCCCC
Q 025708           99 VVKGINLAIRDMM-SSDPYVVLRLG--Q----QTVQTTIVKSNLNPVWNEELMLSVPQ-----EYGPVKLEVFDHDTFSA  166 (249)
Q Consensus        99 v~~a~~L~~~~~~-~~dpyv~v~l~--~----~~~kT~~~~~t~~P~W~e~f~f~v~~-----~~~~L~i~V~d~~~~~~  166 (249)
                      ..+|++|..++.. ++|||..+.-.  .    ..++|++++++++|.|.+. .+....     ....+.+.+||++..++
T Consensus       142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCccccc-ccchhhhcccCCCCceEEEEeccCCCCC
Confidence            3567888888887 99999998752  2    2379999999999999873 443322     35789999999999999


Q ss_pred             CCeeEEEEEechhhhh
Q 025708          167 DDIMGEAEIDIQPLLT  182 (249)
Q Consensus       167 d~~iG~~~i~l~~l~~  182 (249)
                      +++||.+..++..+..
T Consensus       221 ~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  221 HDLIGKFQTTLSELQE  236 (529)
T ss_pred             cCceeEecccHHHhcc
Confidence            9999999999998854

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.18  E-value=0.00011  Score=65.50  Aligned_cols=53  Identities=30%  Similarity=0.495  Sum_probs=44.0

Q ss_pred             cccCchHHHHHHhhcCCC------CCCCCCCCCCHH-HHHHHHHHHhhcccccC-CccccC
Q 025708            3 EVGGNSSANAIYEAFIPE------GVSKPGPDSSHE-IRSKFIRSKYELQEFLK-PSLRIA   55 (249)
Q Consensus         3 ~~~gn~~~n~~~e~~~p~------~~~kp~~~~~~~-~~e~~ir~ky~~~~f~~-~~~~~~   55 (249)
                      ....|..||+|||+.|=+      +++||+|.+.-+ .+++|||+||+...|.. ++++..
T Consensus        65 ~tLn~~gaNsIWEh~Lld~st~~sg~rk~~pqD~~Hp~K~eFIkaKy~~LtFv~~~~~rDd  125 (669)
T KOG0818|consen   65 ETLNNNGANSIWEHSLLDPATIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDD  125 (669)
T ss_pred             HHHHhcCcchhhhhhccCchhhhcccCCCCCcCCCCccHHHHHHHHHHheeeeccCCCCCc
Confidence            344688899999999864      788999999888 99999999999999997 444433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.02  E-value=0.00027  Score=68.00  Aligned_cols=53  Identities=36%  Similarity=0.509  Sum_probs=46.6

Q ss_pred             cccCchHHHHHHhhcCCCC-CCCCCCCCCHHHHHHHHHHHhhcccccCCccccC
Q 025708            3 EVGGNSSANAIYEAFIPEG-VSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIA   55 (249)
Q Consensus         3 ~~~gn~~~n~~~e~~~p~~-~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~~~~   55 (249)
                      ...||..+|.|||+.||+. ..+|++.+.+..|+.||++||.++.|........
T Consensus       483 ~~lgn~~~N~i~e~~l~~~~~~~~~~~~~~~~r~~~i~~kyve~~F~~k~~~~~  536 (785)
T KOG0521|consen  483 KNLGNKYVNEIYEALLPSYDSSKPTASSSRQAREAWIKAKYVERRFSVKEPQIK  536 (785)
T ss_pred             HHhCcchhhhhhhcccccccccCCCCccchhhhhHhhhcccceeeEeecccchh
Confidence            3469999999999999975 7899999999999999999999999997665543

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.96  E-value=0.0083  Score=47.48  Aligned_cols=88  Identities=18%  Similarity=0.254  Sum_probs=62.3

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCeE----EeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEEec
Q 025708           92 IGLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDH  161 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~----~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~d~  161 (249)
                      ...+.|+|+.+.+|...+ ...+-||.+.+  |.+.    ..|+.+.....+.|||.+.|++.-    ....|.|+||+.
T Consensus         7 ~~~f~i~i~~~~~~~~~~-~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           7 EEKFSITLHKISNLNAAE-RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCCEEEEEEEeccCccCC-CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            346899999999998621 24566777755  5443    456555556779999999998654    246799999986


Q ss_pred             CCCC----------------CCCeeEEEEEechhh
Q 025708          162 DTFS----------------ADDIMGEAEIDIQPL  180 (249)
Q Consensus       162 ~~~~----------------~d~~iG~~~i~l~~l  180 (249)
                      ....                .+..||.+.++|-+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            5321                246899999998764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.91  E-value=0.011  Score=46.13  Aligned_cols=86  Identities=20%  Similarity=0.242  Sum_probs=61.1

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCeE----EeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEEec
Q 025708           92 IGLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDH  161 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~----~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~d~  161 (249)
                      ...+.|.|+.+.++...+  ..|-||.+.+  |.+.    ..|..+.. .++.|||.+.|++.-    ....|.|+||+.
T Consensus         7 ~~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           7 NSNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            356889999999987653  3578888866  4432    34444443 679999999998754    246799999996


Q ss_pred             CCCC----CCCeeEEEEEechhh
Q 025708          162 DTFS----ADDIMGEAEIDIQPL  180 (249)
Q Consensus       162 ~~~~----~d~~iG~~~i~l~~l  180 (249)
                      ..-.    ....||.+.++|-+.
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECC
Confidence            5421    224699999999774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=96.91  E-value=0.0021  Score=54.56  Aligned_cols=94  Identities=16%  Similarity=0.194  Sum_probs=68.1

Q ss_pred             cccceeeeEEEEEEEEeecCCCCCC--C-CCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEec
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRDM--M-SSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDH  161 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~~--~-~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~  161 (249)
                      +.....+|.|.++++.+++|.....  + ..+-||++..+.+. .+|.+......-.|.|.|..++.. ...+.+-||.|
T Consensus        44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW  122 (442)
T KOG1452|consen   44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSW  122 (442)
T ss_pred             eeeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeec
Confidence            3344567999999999999976543  3 67899999987654 577777667777899999998775 35788889998


Q ss_pred             CCCCCCCeeEEEEEechhh
Q 025708          162 DTFSADDIMGEAEIDIQPL  180 (249)
Q Consensus       162 ~~~~~d~~iG~~~i~l~~l  180 (249)
                      +.-.++.+.-..-+.+..+
T Consensus       123 ~pq~RHKLC~~g~l~~~~v  141 (442)
T KOG1452|consen  123 PPQRRHKLCHLGLLEAFVV  141 (442)
T ss_pred             Cchhhccccccchhhhhhh
Confidence            8766666543333333333

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=96.88  E-value=0.0016  Score=62.02  Aligned_cols=89  Identities=21%  Similarity=0.402  Sum_probs=69.7

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCcEEEEEECC-------eEEeeeeec-CcCCceeee-eEEEE-ee-CCCccEEEEEEe
Q 025708           92 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-------QTVQTTIVK-SNLNPVWNE-ELMLS-VP-QEYGPVKLEVFD  160 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-------~~~kT~~~~-~t~~P~W~e-~f~f~-v~-~~~~~L~i~V~d  160 (249)
                      .+++.|+|+++.-|..+..   ..||.|.+-+       ..++|+++. ++.||+|+| .|.|. |. +.-..|+|.||+
T Consensus       702 A~t~sV~VISgqFLSdrkv---gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye  778 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRKV---GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE  778 (1189)
T ss_pred             EeeEEEEEEeeeecccccc---CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence            4789999999999977665   4899999822       347888766 578999995 57776 32 245689999999


Q ss_pred             cCCCCCCCeeEEEEEechhhhhhhhhc
Q 025708          161 HDTFSADDIMGEAEIDIQPLLTSALAF  187 (249)
Q Consensus       161 ~~~~~~d~~iG~~~i~l~~l~~~~~~~  187 (249)
                      .+    ..+||+-.+|+..|..+.++.
T Consensus       779 Eg----gK~ig~RIlpvd~l~~GYrhv  801 (1189)
T KOG1265|consen  779 EG----GKFIGQRILPVDGLNAGYRHV  801 (1189)
T ss_pred             cC----CceeeeeccchhcccCcceeE
Confidence            65    379999999999998887655

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.88  E-value=0.009  Score=46.35  Aligned_cols=88  Identities=18%  Similarity=0.216  Sum_probs=60.9

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCeE----EeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEEecC
Q 025708           93 GLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHD  162 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~----~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~d~~  162 (249)
                      ..++|.+....++...+....+-||.+.+  |.+.    ..|.......++.|||.+.|++.-    ....|.|+||+.+
T Consensus         8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            45778888887776522224567777765  4432    344444444689999999998644    3467999999977


Q ss_pred             CCC--CCCeeEEEEEechhh
Q 025708          163 TFS--ADDIMGEAEIDIQPL  180 (249)
Q Consensus       163 ~~~--~d~~iG~~~i~l~~l  180 (249)
                      ..+  .+..||.+.++|-+.
T Consensus        88 ~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             cCCCCcceEEEEEeEEeEcc
Confidence            543  457999999999774

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.76  E-value=0.027  Score=43.49  Aligned_cols=94  Identities=19%  Similarity=0.282  Sum_probs=69.0

Q ss_pred             eeeeEEEEEEEEeecCCCCCC---C--CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCC--------------
Q 025708           90 EFIGLLKVKVVKGINLAIRDM---M--SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE--------------  150 (249)
Q Consensus        90 ~~~g~L~V~v~~a~~L~~~~~---~--~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~--------------  150 (249)
                      +....|++.|..++-+-..-.   .  .+--.+-+.+++++++|+.+..+.+|.|+|.|.|.+...              
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            345678888888764432111   1  233355566689999999999999999999999998652              


Q ss_pred             CccEEEEEEecCCCCCCCeeEEEEEechhhhhh
Q 025708          151 YGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS  183 (249)
Q Consensus       151 ~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~  183 (249)
                      ..++.+.|..-|..+...++|.-.++...+...
T Consensus        86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s  118 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS  118 (156)
T ss_pred             CCceEEEEEEecCCCceEeeeeceehHHHHhcc
Confidence            246888888877766668999988888887544

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.48  E-value=0.015  Score=45.38  Aligned_cols=69  Identities=19%  Similarity=0.264  Sum_probs=50.9

Q ss_pred             CCCcEEEEEE--CCeE----EeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEEecCCCCCCCeeEEEEEechhh
Q 025708          112 SSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDTFSADDIMGEAEIDIQPL  180 (249)
Q Consensus       112 ~~dpyv~v~l--~~~~----~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l  180 (249)
                      .+|-||.+.+  ++..    ..|..+.-+..+.|||.+.|+|.-    ....|.|+||+.+..+....||.+.++|-+.
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            4577777766  3332    355555556678999999999754    3467999999987655667999999999774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

Probab=96.26  E-value=0.0053  Score=53.06  Aligned_cols=49  Identities=37%  Similarity=0.624  Sum_probs=39.8

Q ss_pred             ccccCchHHHHHHhhcCCCCC-CCCCCCCCHHHHHHHHHHHhhcccccCC
Q 025708            2 IEVGGNSSANAIYEAFIPEGV-SKPGPDSSHEIRSKFIRSKYELQEFLKP   50 (249)
Q Consensus         2 ~~~~gn~~~n~~~e~~~p~~~-~kp~~~~~~~~~e~~ir~ky~~~~f~~~   50 (249)
                      ++.+||..||.+||.++-... .+.....+...+++||+.||+.++|..-
T Consensus        76 m~~gGN~~a~~~~e~~~~~~~~~~~k~~yd~~v~~~y~~~ky~~~~~~~~  125 (319)
T COG5347          76 MEVGGNSNANRFYEKNLLDQLLLPIKAKYDSSVAKKYIRKKYELKKFIDD  125 (319)
T ss_pred             HHHhcchhhhhHhccCCCcccccccccccCHHHHHHHHHHHHHhhhcccc
Confidence            345899999999999986532 3445666777899999999999999975

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=96.17  E-value=0.38  Score=36.38  Aligned_cols=90  Identities=18%  Similarity=0.273  Sum_probs=60.0

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCcEEEEEECCeE---Eeeeee-cCcCCceeeeeEEEEeeC---------CCccEEEE
Q 025708           91 FIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQT---VQTTIV-KSNLNPVWNEELMLSVPQ---------EYGPVKLE  157 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~---~kT~~~-~~t~~P~W~e~f~f~v~~---------~~~~L~i~  157 (249)
                      ..-.+.|.|.+..+++..   ...-||+...+...   ..|... ..+..-.|+|.|.+.+..         ....+.|.
T Consensus         5 ~kf~~~l~i~~l~~~p~~---~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~   81 (143)
T PF10358_consen    5 VKFQFDLTIHELENLPSS---NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS   81 (143)
T ss_pred             eeEEEEEEEEEeECcCCC---CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence            345678899999988862   22345555555543   344333 235567999999998643         13468899


Q ss_pred             EEecCCCCCCCeeEEEEEechhhhhh
Q 025708          158 VFDHDTFSADDIMGEAEIDIQPLLTS  183 (249)
Q Consensus       158 V~d~~~~~~d~~iG~~~i~l~~l~~~  183 (249)
                      |+....-++...+|.+.|+|.++...
T Consensus        82 v~~~~~~~~k~~lG~~~inLaey~~~  107 (143)
T PF10358_consen   82 VFEVDGSGKKKVLGKVSINLAEYANE  107 (143)
T ss_pred             EEEecCCCccceEEEEEEEHHHhhCc
Confidence            98874323336899999999999653

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=96.02  E-value=0.14  Score=44.79  Aligned_cols=102  Identities=21%  Similarity=0.345  Sum_probs=78.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC--------CCccEEEEEEecC-CCC
Q 025708           95 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--------EYGPVKLEVFDHD-TFS  165 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~--------~~~~L~i~V~d~~-~~~  165 (249)
                      +.|.|++|++++...  ...-.+...+++....|..+..+-.|.|+..+.-++..        ...+|++++|..+ .-+
T Consensus         2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~   79 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG   79 (340)
T ss_pred             EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence            578999999998763  23567888999999999999999999999888777644        3568999999887 445


Q ss_pred             CCCeeEEEEEechhh-hhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          166 ADDIMGEAEIDIQPL-LTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       166 ~d~~iG~~~i~l~~l-~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      ..+.||.+.++|... +...        .....-..||+|..
T Consensus        80 ~re~iGyv~LdLRsa~~~~~--------~~~~~~~~W~~LL~  113 (340)
T PF12416_consen   80 KRESIGYVVLDLRSAVVPQE--------KNQKQKPKWYKLLS  113 (340)
T ss_pred             cceeccEEEEEccccccccc--------cccccCCCeeEccc
Confidence            678999999999988 1111        11224568998655

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=95.92  E-value=0.15  Score=35.60  Aligned_cols=63  Identities=17%  Similarity=0.284  Sum_probs=47.3

Q ss_pred             CCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEEEEEechhh
Q 025708          113 SDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPL  180 (249)
Q Consensus       113 ~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l  180 (249)
                      .+-.+++.+++.. .+|.-.. -.+..|++.|.|++... +.|.|.||-+|-   ..+.|-..+.|++.
T Consensus         9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdRs-RELEI~VywrD~---RslCav~~lrLEd~   72 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELERS-RELEIAVYWRDW---RSLCAVKFLKLEDE   72 (98)
T ss_pred             cceEEEEEEcCeEEeeccccc-cccccccceeEEEeecc-cEEEEEEEEecc---hhhhhheeeEhhhh
Confidence            4677888887754 4555443 36789999999999874 789999998775   35678788888874

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.88  E-value=0.054  Score=42.73  Aligned_cols=90  Identities=20%  Similarity=0.245  Sum_probs=63.3

Q ss_pred             eeeEEEEEEEEeecCCCCCCC-CCCcEEEEEE--CCeE----Eeeeeec----CcCCceeeeeEEEEeeC----CCccEE
Q 025708           91 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQT----VQTTIVK----SNLNPVWNEELMLSVPQ----EYGPVK  155 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~~~----~kT~~~~----~t~~P~W~e~f~f~v~~----~~~~L~  155 (249)
                      ....+.|+|..+.+++..... ..|-||.+.+  |.+.    ..|+...    -...+.|||.+.|++.-    ....|.
T Consensus         6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~   85 (171)
T cd04012           6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV   85 (171)
T ss_pred             ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence            456788999999999876543 5678888866  5443    3443221    12357799999998744    246799


Q ss_pred             EEEEecCCCC---------CCCeeEEEEEechhh
Q 025708          156 LEVFDHDTFS---------ADDIMGEAEIDIQPL  180 (249)
Q Consensus       156 i~V~d~~~~~---------~d~~iG~~~i~l~~l  180 (249)
                      |+||+....+         .+..||.+.++|-+.
T Consensus        86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            9999876543         346999999999774

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.57  E-value=0.13  Score=40.85  Aligned_cols=88  Identities=13%  Similarity=0.121  Sum_probs=55.3

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCeE---EeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEEecCC
Q 025708           93 GLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT---VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDT  163 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~---~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~d~~~  163 (249)
                      ..++|.|..+..+.........-||.+.+  |...   .+|....-+.++.|||.+.|++.-    ....|.|+||+...
T Consensus        10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~   89 (178)
T cd08399          10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA   89 (178)
T ss_pred             CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence            45677888776332221112335666644  4432   355555556789999999998754    24679999998632


Q ss_pred             CC----------------CCCeeEEEEEechhh
Q 025708          164 FS----------------ADDIMGEAEIDIQPL  180 (249)
Q Consensus       164 ~~----------------~d~~iG~~~i~l~~l  180 (249)
                      ..                .+..||.+.+.|-+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~  122 (178)
T cd08399          90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDH  122 (178)
T ss_pred             CcccccccccccccccccccceEEEEEEEEEcC
Confidence            11                245788899888764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=95.56  E-value=0.12  Score=39.40  Aligned_cols=54  Identities=17%  Similarity=0.294  Sum_probs=40.7

Q ss_pred             eeeeecCc-CCceeeeeEEEEeeC----CCccEEEEEEecCCCCCC----CeeEEEEEechhh
Q 025708          127 QTTIVKSN-LNPVWNEELMLSVPQ----EYGPVKLEVFDHDTFSAD----DIMGEAEIDIQPL  180 (249)
Q Consensus       127 kT~~~~~t-~~P~W~e~f~f~v~~----~~~~L~i~V~d~~~~~~d----~~iG~~~i~l~~l  180 (249)
                      .|....-+ ..+.|+|.+.|++.-    ....|.|+||..+.....    ..||.+.++|-+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            56655555 799999999999754    356899999998765554    6999999999775

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=94.99  E-value=0.5  Score=37.84  Aligned_cols=54  Identities=19%  Similarity=0.351  Sum_probs=42.2

Q ss_pred             EEeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCCCC--CCeeEEEEEech
Q 025708          125 TVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSA--DDIMGEAEIDIQ  178 (249)
Q Consensus       125 ~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~~~--d~~iG~~~i~l~  178 (249)
                      .++|-+...+.+|.|+|++.+.++.   ....|.|++++...-.+  ...+|-+-++|-
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            4688899999999999999999877   45789999888543221  257898888884

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=94.12  E-value=1.1  Score=36.02  Aligned_cols=55  Identities=9%  Similarity=0.220  Sum_probs=42.1

Q ss_pred             eEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCC-CC---CCeeEEEEEech
Q 025708          124 QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF-SA---DDIMGEAEIDIQ  178 (249)
Q Consensus       124 ~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~-~~---d~~iG~~~i~l~  178 (249)
                      ..++|-+...+.+|.|+|++.+.++.   ....|.|++++...- .+   ...+|-+-++|-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            34788888889999999999999876   467899999885421 11   246888888874

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species

Probab=93.92  E-value=0.99  Score=35.43  Aligned_cols=78  Identities=21%  Similarity=0.293  Sum_probs=52.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCcEEEEEE----------CCe-EEeeeeecC-----cCCceeeeeEEEEeeC--C--CccE
Q 025708           95 LKVKVVKGINLAIRDMMSSDPYVVLRL----------GQQ-TVQTTIVKS-----NLNPVWNEELMLSVPQ--E--YGPV  154 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~~~~dpyv~v~l----------~~~-~~kT~~~~~-----t~~P~W~e~f~f~v~~--~--~~~L  154 (249)
                      +.=.|..|.+..     ..+-||+..+          +.. ...|.+...     ...-.|+.-|.+....  .  -..|
T Consensus         4 v~G~I~~a~~f~-----~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L   78 (168)
T PF07162_consen    4 VIGEIESAEGFE-----EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL   78 (168)
T ss_pred             EEEEEEEEECCC-----CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence            345677787654     2356888877          123 345555543     3346799888877644  1  2479


Q ss_pred             EEEEEecCCCCCCCeeEEEEEec
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDI  177 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l  177 (249)
                      .|+||..|..+++.+.|-..+.|
T Consensus        79 ~l~V~~~D~~gr~~~~GYG~~~l  101 (168)
T PF07162_consen   79 VLQVYSLDSWGRDRVEGYGFCHL  101 (168)
T ss_pred             EEEEEEEcccCCeEEeEEeEEEe
Confidence            99999999999999988766665

Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=93.67  E-value=0.29  Score=38.96  Aligned_cols=54  Identities=15%  Similarity=0.264  Sum_probs=34.4

Q ss_pred             EeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCCCC---CCeeEEEEEechh
Q 025708          126 VQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSA---DDIMGEAEIDIQP  179 (249)
Q Consensus       126 ~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~~~---d~~iG~~~i~l~~  179 (249)
                      +.|.+...+.+|.|+|+|.+.++.   ....|.|++++...-..   ...+|-+.++|-+
T Consensus        61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            567778888999999999999987   45689999998654221   1689999999876

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=93.43  E-value=1.5  Score=34.44  Aligned_cols=69  Identities=14%  Similarity=0.250  Sum_probs=52.7

Q ss_pred             CCCcEEEEEECCeE-EeeeeecC--cCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEEEEEechhhh
Q 025708          112 SSDPYVVLRLGQQT-VQTTIVKS--NLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLL  181 (249)
Q Consensus       112 ~~dpyv~v~l~~~~-~kT~~~~~--t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~  181 (249)
                      ...-|+++.++++. .+|+...-  ...=.|+|.|.+.+..-...|.++||.... ..+.+|+.+.+++-...
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~  107 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGST  107 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence            34679999997765 45555443  334567899999998756899999999887 57889999999987653

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=93.41  E-value=0.4  Score=44.14  Aligned_cols=60  Identities=25%  Similarity=0.509  Sum_probs=49.1

Q ss_pred             EeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCC----CCCCCeeEEEEEechhhhhhhh
Q 025708          126 VQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDT----FSADDIMGEAEIDIQPLLTSAL  185 (249)
Q Consensus       126 ~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~----~~~d~~iG~~~i~l~~l~~~~~  185 (249)
                      .+|.++.+.+||.|-+.|.+.... ..+.|++.++|-+.    +...+|+|++...+..+.....
T Consensus        43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~  107 (529)
T KOG1327|consen   43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG  107 (529)
T ss_pred             cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh
Confidence            589999999999999988877554 45789999999664    3567899999999999876543

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=93.31  E-value=0.75  Score=32.78  Aligned_cols=68  Identities=19%  Similarity=0.250  Sum_probs=44.9

Q ss_pred             EEEEEEEeecCCCCCCC-CCCcEEEEEE--CCeE----EeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEEecC
Q 025708           95 LKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHD  162 (249)
Q Consensus        95 L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~~~----~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~d~~  162 (249)
                      +.+.+..+.+....... ..+-||.+.+  |++.    ..|..+.-...+.|||.+.|++.-    ....|.|+||+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            55666666666554433 3477888876  4432    355555445668999999998654    2467999999854

Outlier of C2 family.

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=90.10  E-value=1.4  Score=34.92  Aligned_cols=53  Identities=15%  Similarity=0.295  Sum_probs=40.0

Q ss_pred             EeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCC-----CCCCeeEEEEEechh
Q 025708          126 VQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF-----SADDIMGEAEIDIQP  179 (249)
Q Consensus       126 ~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~-----~~d~~iG~~~i~l~~  179 (249)
                      ++|-+..+ .+|.|+|+|.+.++.   ....|.|++++...-     .....+|-+.+||-+
T Consensus        55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            44444444 899999999999876   457899999986532     235689999999875

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=90.03  E-value=3.8  Score=40.06  Aligned_cols=82  Identities=17%  Similarity=0.257  Sum_probs=64.4

Q ss_pred             CCcEEEEEECCeE-EeeeeecCc-CCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCC
Q 025708          113 SDPYVVLRLGQQT-VQTTIVKSN-LNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDP  190 (249)
Q Consensus       113 ~dpyv~v~l~~~~-~kT~~~~~t-~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~  190 (249)
                      .++|+.+.+.... .+|....+. .+|.|.+.|...+......+.+.|-+.+..+...++|.+.++...++.+       
T Consensus       138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~-------  210 (887)
T KOG1329|consen  138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG-------  210 (887)
T ss_pred             ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcc-------
Confidence            3788888886654 567666666 7899999998887777788999998888887678999999999988654       


Q ss_pred             CCcCCeeeeeeEecCC
Q 025708          191 EMFGNMQIGKWLKSDD  206 (249)
Q Consensus       191 ~~~~~~~~~~w~~~~~  206 (249)
                           ..++.|++..+
T Consensus       211 -----~~~~~~~~Il~  221 (887)
T KOG1329|consen  211 -----HRIGGWFPILD  221 (887)
T ss_pred             -----ccccceeeeec
Confidence                 35677887433

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=88.59  E-value=2  Score=34.08  Aligned_cols=55  Identities=11%  Similarity=0.233  Sum_probs=42.3

Q ss_pred             EEeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCCC------CCCeeEEEEEechh
Q 025708          125 TVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFS------ADDIMGEAEIDIQP  179 (249)
Q Consensus       125 ~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~~------~d~~iG~~~i~l~~  179 (249)
                      ...|.+...+.+|.|+|++.+.++.   ....|.|+.++.+.-.      ....+|-+.+||-.
T Consensus        55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            4678888889999999999999876   4568999999844321      13568988888864

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]

Probab=88.58  E-value=0.058  Score=50.19  Aligned_cols=82  Identities=13%  Similarity=0.163  Sum_probs=60.0

Q ss_pred             cccceeeeEEEEEEEEeecCCCCC--C---CCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEE
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRD--M---MSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEV  158 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~--~---~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V  158 (249)
                      .+..+..|....+++.|.++++.-  .   ...++++...++.+.++|+....+.+|+|||. .+++..  ....|...|
T Consensus       273 ~~~dd~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~ki  351 (975)
T KOG2419|consen  273 HDADDFTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKI  351 (975)
T ss_pred             cccchhhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhc
Confidence            345667777778888888876431  1   26789999999999999999999999999997 666554  344566666


Q ss_pred             EecCCCCCCC
Q 025708          159 FDHDTFSADD  168 (249)
Q Consensus       159 ~d~~~~~~d~  168 (249)
                      .+++.+..++
T Consensus       352 v~~~~~~lnd  361 (975)
T KOG2419|consen  352 VGYCELDLND  361 (975)
T ss_pred             cccccccccc
Confidence            6666554444

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=88.47  E-value=6.3  Score=28.50  Aligned_cols=66  Identities=24%  Similarity=0.395  Sum_probs=35.7

Q ss_pred             EEEEEEC-CeEEeeeeecCcCCceeeeeEEEEeeCC--------CccEEEEEEecCCCCCCCeeEEEEEechhhhhh
Q 025708          116 YVVLRLG-QQTVQTTIVKSNLNPVWNEELMLSVPQE--------YGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS  183 (249)
Q Consensus       116 yv~v~l~-~~~~kT~~~~~t~~P~W~e~f~f~v~~~--------~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~  183 (249)
                      ||.+.+- .+.+.|.++. ..+|.+|-+-.|.|...        ...+.|+++..-. .....+|.+.+++..++..
T Consensus         2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~   76 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLES   76 (107)
T ss_dssp             EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH-
T ss_pred             EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcC
Confidence            5666663 3456666666 79999999999988652        4679999998653 3457999999999999744

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=87.23  E-value=3.2  Score=33.17  Aligned_cols=55  Identities=15%  Similarity=0.286  Sum_probs=42.8

Q ss_pred             EEeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCC---------CCCCeeEEEEEechh
Q 025708          125 TVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF---------SADDIMGEAEIDIQP  179 (249)
Q Consensus       125 ~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~---------~~d~~iG~~~i~l~~  179 (249)
                      ...|.+...+.+|.|.|++.+.++.   ....|.|+.|+..-.         .....+|-+.+||-.
T Consensus        57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            4678888889999999999999876   456899999986521         113568999998865

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=85.08  E-value=0.57  Score=45.32  Aligned_cols=48  Identities=35%  Similarity=0.517  Sum_probs=39.7

Q ss_pred             cccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccCCc
Q 025708            3 EVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS   51 (249)
Q Consensus         3 ~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~   51 (249)
                      -.+||..+|..|-.++|.+ .--.++++..-|.+||.+||..-.|-..-
T Consensus       357 ivlgn~~an~Fwa~nl~~~-e~lh~dssp~~r~~fi~~Kykeg~fRk~~  404 (1186)
T KOG1117|consen  357 IVLGNPRANRFWAGNLPPN-EHLHPDSSPSTRRQFIKEKYKEGKFRKEH  404 (1186)
T ss_pred             eeecCcccccccccCCCCc-cccCCCCCcchhhhHHHHHhhcccccccc
Confidence            4579999999999999976 34567788888999999999988876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	249
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		3e-13
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		1e-12
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		2e-11
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		1e-09
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		7e-09
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		7e-07
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		1e-06
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		1e-06
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		2e-06
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		2e-06
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		8e-06
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		8e-06
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		9e-06
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		9e-06
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		2e-05
3feh_A	386	Crystal Structure Of Full Length Centaurin Alpha-1		1e-04
3fm8_C	392	Crystal Structure Of Full Length Centaurin Alpha-1		1e-04
1gmi_A	136	Structure Of The C2 Domain From Novel Protein Kinas		1e-04
2iqj_A	134	Crystal Structure Of The Gap Domain Of Smap1l (Loc6		2e-04
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		2e-04
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		3e-04
3nsj_A	540	The X-Ray Crystal Structure Of Lymphocyte Perforin		4e-04
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		4e-04
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		5e-04
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		8e-04

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 25/169 (14%)
Query: 94  LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLS 146
           +++VKV+ GI LA +D++ +SDPYV + L         +VQT  +K +LNP WNEE++  
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 147 VPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206
           V  +   +  EVFD +  + DD +G+ ++ + PL T       P  F            D
Sbjct: 69  VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFK-----------D 117
Query: 207 NALLEDSTINIIDGKVKQKISL------KLQNVESGELELELEWMPLDQ 249
             L   S  + + G ++ K++       + +N +  E ELE  W+ LDQ
Sbjct: 118 FVLHPRSHKSRVKGYLRLKMTYLPKNGSEDENADQAE-ELEPGWVVLDQ 165

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 16/124 (12%)
Query: 89  VEFIGLL---------KVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVK 132
           VE  GLL         +V+V+ GI LA +D++ +SDPYV + L         +VQT  +K
Sbjct: 7   VEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK 66
Query: 133 SNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEM 192
            +LNP WNEE++  V  +   +  EVFD +  + DD +G+ ++ + PL T       P  
Sbjct: 67  KSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYT 126
Query: 193 FGNM 196
           F + 
Sbjct: 127 FKDF 130

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 94  LLKVKVVKGINLAIRDMM-SSDPYVVLRLG-------QQTVQTTIVKSNLNPVWNEELML 145
           +L+VKVV GI+LA +D+  +SDPYV L L           VQT  +K  LNP WNEE   
Sbjct: 22  ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 146 SVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNM 196
            V      +  EVFD +  + DD +G+ ++ +  L T       P  F + 
Sbjct: 82  RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDF 132

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 87  GMVEFIGLLKVKVVKGINLAIRDMMS-SDPYVVLRLGQQTVQTTIVKSNLNPVWNEELML 145
           G V+ +G+L+VKV+K  +L   D    SDP+ +L LG   +QT  V  NLNP WN+    
Sbjct: 7   GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF 66
Query: 146 SVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLT 182
            +   +  +++ VFD D     D +G+  I   PLL+
Sbjct: 67  PIKDIHDVLEVTVFDEDGDKPPDFLGKVAI---PLLS 100

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 92  IGLLKVKVVKGINL-AIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE 150
           IG L V V++   L A +    S+PY  + +G Q+  T  ++  LNP WN      +   
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL 445
Query: 151 YGPV-KLEVFDHDTFSADDIMGEAEIDIQPLLT 182
           Y  V  L +FD D FS DD +G  EI +  + T
Sbjct: 446 YQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRT 478

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 87  GMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELML 145
           G  ++   + + VV    L  +D   SSDPYV +++G+   +T  +  NLNPVW E    
Sbjct: 11  GTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHF 70
Query: 146 SVPQEYGPVKLEVFDHD-----------TFSADDIMGEAEIDIQPL 180
                   +K+ V D D              +DD +G+  I+++ L
Sbjct: 71  ECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 95  LKVKVVKGINLAIRDMMS-SDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 149
           L V++++ ++L  +D    SDPYV + L    ++  QT + +  LNP++NE    SVP  
Sbjct: 22  LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 150 EYGPVKLE--VFDHDTFSADDIMGEAEID 176
           E    KL   V+D D FS  D++G+  +D
Sbjct: 82  ELAQRKLHFSVYDFDRFSRHDLIGQVVLD 110

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 95  LKVKVVKGINLAIRDMMS-SDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 149
           L V++++ ++L  +D    SDPYV + L    ++  QT + +  LNP++NE    SVP  
Sbjct: 23  LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 150 EYGPVKLE--VFDHDTFSADDIMGEAEID 176
           E    KL   V+D D FS  D++G+  +D
Sbjct: 83  ELAQRKLHFSVYDFDRFSRHDLIGQVVLD 111

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 93  GLLKVKVVKGINLAIRDMMSS-DPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQE 150
           G L+V +V    L   D +++ DPYV L    Q  ++ + +     P WNE  + +V + 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 151 YGPVKLEVFDHDTFSADDIMGEAEIDIQPLL 181
              +K ++FD D  + DD +GEA I ++P+ 
Sbjct: 70  TTELKAKIFDKDVGTEDDAVGEATIPLEPVF 100

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 83  KKDVGMVEF-IGL------LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIV 131
           ++++G ++F +G       L VK++K   L  +D   +SDP+V + L    +  ++T + 
Sbjct: 9   RENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVK 68
Query: 132 KSNLNPVWNEELML-SVPQE---YGPVKLEVFDHDTFSADDIMGEAEIDI 177
           + NLNP WNE  +    P E      + L+V D+D FS +D +GE  I +
Sbjct: 69  RKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 118

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 95  LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 149
           L V +++   L   DM  +SDPYV + L    ++  +T + +  LNPV+NE+    VP  
Sbjct: 19  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 150 EYG--PVKLEVFDHDTFSADDIMGEAEI 175
           E G   + + V+D D FS  DI+GE ++
Sbjct: 79  ELGGKTLVMAVYDFDRFSKHDIIGEFKV 106

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 95  LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 149
           L V +++   L   DM  +SDPYV + L    ++  +T + +  LNPV+NE+    VP  
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 150 EYG--PVKLEVFDHDTFSADDIMGEAEI 175
           E G   + + V+D D FS  DI+GE ++
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKV 123

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 95  LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 149
           L V +++   L   DM  +SDPYV + L    ++  +T + +  LNPV+NE+    VP  
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 150 EYG--PVKLEVFDHDTFSADDIMGEAEI 175
           E G   + + V+D D FS  DI+GE ++
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKV 123

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 95  LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 149
           L V +++   L   DM  +SDPYV + L    ++  +T + +  LNPV+NE+    VP  
Sbjct: 44  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 150 EYG--PVKLEVFDHDTFSADDIMGEAEI 175
           E G   + + V+D D FS  DI+GE ++
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKV 131

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 95  LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQE 150
           L V +++   L   DM  +SDPYV + L    ++  +T + +  LNPV+NE+    VP  
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 151 YGPVK---LEVFDHDTFSADDIMGEAEI 175
               K   + V+D D FS  DI+GE ++
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGEFKV 108

>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 6   GNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 50
           GN +A A +E+ +P    +P P     +R ++IR+KYE QEF+ P
Sbjct: 93  GNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYP 137

>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 6   GNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 50
           GN +A A +E+ +P    +P P     +R ++IR+KYE QEF+ P
Sbjct: 95  GNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYP 139

>pdb|1GMI|A Chain A, Structure Of The C2 Domain From Novel Protein Kinase C Epsilon Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Query: 88  MVEFIGLLKVKVVKGINL-----AIRDMMSS-------DPYVVLRLGQQTVQTTIVKSNL 135
           MV F GLLK+K+ + ++L     ++RD +         DPY+ L +    +  T  K   
Sbjct: 1   MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60
Query: 136 N-PVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLL 181
           N P W++E +  V      ++L VF       DD +    I  + LL
Sbjct: 61  NSPAWHDEFVTDVCNGR-KIELAVFHDAPIGYDDFVANCTIQFEELL 106

>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 6   GNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 54
           GN  AN +YEA++PE   +P  D + E    FIR KYE ++++  SL I
Sbjct: 87  GNGKANRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKKYMDRSLDI 132

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 19/105 (18%)
Query: 92  IGLLKVKVVKGINLAIRDMMS-SDPYVVLRL----GQQTV----------QTTIVKSNLN 136
           +G L + +++  NL  RD    SDP+V + L    GQ  V          +T  V+ +LN
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 137 PVWNEELML-SVPQEY---GPVKLEVFDHDTFSADDIMGEAEIDI 177
           P WN+ ++  S+  E      +++ V+D+D FS++D +GE  ID+
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 113 SDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVK----LEVFDHDT 163
           SDPYV L+L          +T  VK+ LNPVWNE  + ++  + G V+    +EV+D D 
Sbjct: 41  SDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNL--KPGDVERRLSVEVWDWDR 98
Query: 164 FSADDIMGEAEIDIQPLLTSAL 185
            S +D MG     +  LL + +
Sbjct: 99  TSRNDFMGAMSFGVSELLKAPV 120

>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin Length = 540

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 35  SKFIRSKYELQEFLKPSLRIASGKPSASLQSSFSRKIIDSFRSTNSSQKKDVGMVEFIGL 94
           S +I S+   Q   +P     SG+  +S   S   +  DS  +      +  G+   +  
Sbjct: 344 SHYIMSRARWQNCSRP---CRSGQHKSS-HDSCQCECQDSKVTNQDCCPRQRGLAHLV-- 397
Query: 95  LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWN-----EELMLSVPQ 149
             V   +  +L      ++D Y+ +  G Q  +T +V +N NP W      E ++LS   
Sbjct: 398 --VSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTG- 454
Query: 150 EYGPVKLEVFDHDTFSADDIMGEAE 174
             GP++++V+D D    DD++G  +
Sbjct: 455 --GPLRVQVWDADYGWDDDLLGSCD 477

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 77  STNSSQKKDVGMVEFIGL-------LKVKVVKGINLAIRDMMS-SDPYVVLRL-----GQ 123
           S +S Q   +G +EF  L       L+  +++   L   D    +DPYV L L       
Sbjct: 6   SYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKS 65
Query: 124 QTVQTTIVKSNLNPVWNEELMLSVPQE----YGPVKLEVFDHDTFSADDIMGEAEIDIQP 179
             ++T  +++  NPVWNE L      E       +++ V D D F  ++ +GE    ++ 
Sbjct: 66  NKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKK 125
Query: 180 L 180
           L
Sbjct: 126 L 126

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 113 SDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKL--EVFDHDTFS 165
           SDPYV L+L      +   +T  +KS+LNP WNE     + +     +L  E++D D  S
Sbjct: 193 SDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 252
Query: 166 ADDIMGEAEIDIQPLLTSAL 185
            +D MG     I  L  + +
Sbjct: 253 RNDFMGSLSFGISELQKAGV 272

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 113 SDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKL--EVFDHDTFS 165
           SDPYV L+L      +   +T  +K +LNP WNE     + +     +L  E++D D  S
Sbjct: 52  SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 111
Query: 166 ADDIMGEAEIDIQPL 180
            +D MG     I  L
Sbjct: 112 RNDFMGSLSFGISEL 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	249
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	4e-40
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	8e-38
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	3e-37
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	7e-36
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	2e-34
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-33
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	3e-31
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	4e-31
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	4e-27
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	2e-24
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	7e-24
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	8e-24
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	7e-23
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	1e-22
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	2e-20
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-20
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-15
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	4e-20
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-19
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-15
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	2e-19
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	4e-19
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	5e-19
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-18
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-18
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	3e-18
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	4e-18
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	7e-17
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	8e-17
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	8e-17
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	1e-16
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	2e-16
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-16
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	4e-16
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	8e-16
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-15
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	2e-15
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	3e-15
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	4e-15
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	4e-15
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	5e-15
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-15
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	6e-14
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-13
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-11
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	3e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-10
2owa_A	138	Arfgap-like finger domain containing protein; zinc	2e-06
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	3e-06
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	3e-05
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	3e-05
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	3e-04

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  133 bits (338), Expect = 4e-40
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 36/160 (22%)

Query: 87  GMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELML 145
           G V+ +G+L+VKV+K  +L   D    SDP+ +L LG   +QT  V  NLNP WN+    
Sbjct: 7   GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF 66

Query: 146 SVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD 205
            +   +  +++ VFD D     D +G+  I +  +       G P  +        LK  
Sbjct: 67  PIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRD-----GQPNCY-------VLK-- 112

Query: 206 DNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM 245
                                +  L+    G + LE++ +
Sbjct: 113 ---------------------NKDLEQAFKGVIYLEMDLI 131

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  128 bits (323), Expect = 8e-38
 Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 37/157 (23%)

Query: 92  IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQ 149
            G L+V +V    L   D + + DPYV L    Q  ++ + +     P WNE  + +V +
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE 68

Query: 150 EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNAL 209
               +K ++FD D  + DD +GEA I ++P+             G++    +        
Sbjct: 69  GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVE----------GSIPPTAYNVVK---- 114

Query: 210 LEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 246
                    D + K            GE+ + L + P
Sbjct: 115 ---------DEEYK------------GEIWVALSFKP 130

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  128 bits (323), Expect = 3e-37
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 23/170 (13%)

Query: 92  IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELM 144
             +++VKV+ GI LA +D++ +SDPYV + L         +VQT  +K +LNP WNEE++
Sbjct: 7   TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEIL 66

Query: 145 LSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 204
             V  +   +  EVFD +  + DD +G+ ++ + PL T            N ++ +    
Sbjct: 67  FRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPT-----------ENPRMERPYTF 115

Query: 205 DDNALLEDSTINIIDGKVKQKISLKLQNVESGE-----LELELEWMPLDQ 249
            D  L   S  + + G ++ K++   +N    E      ELE  W+ LDQ
Sbjct: 116 KDFVLHPRSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQ 165

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  124 bits (312), Expect = 7e-36
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 34/166 (20%)

Query: 88  MVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWN 140
             E   +++V+V+ GI LA +D++ +SDPYV + L         +VQT  +K +LNP WN
Sbjct: 15  DEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWN 74

Query: 141 EELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGK 200
           EE++  V  +   +  EVFD +  + DD +G+ ++ + PL T       P  F      K
Sbjct: 75  EEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTF------K 128

Query: 201 WLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 246
                                         ++   G L L++ ++P
Sbjct: 129 DFVLHPR---------------------SHKSRVKGYLRLKMTYLP 153

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  120 bits (303), Expect = 2e-34
 Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 30/187 (16%)

Query: 64  QSSFSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG 122
            SS    +     S + SQ   +G +     L++ V+       +       PYV + + 
Sbjct: 7   HSSGRENLYFQGMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVD 66

Query: 123 QQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLT 182
            Q+ +T    +  +P W + L + V      +   V+ H T  +D ++G A +DI   L 
Sbjct: 67  GQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLLGTAALDIYETL- 124

Query: 183 SALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELEL 242
                                  +N  LE+  + +  G  K+           G+L + L
Sbjct: 125 ---------------------KSNNMKLEEVVVTLQLGGDKEPT------ETIGDLSICL 157

Query: 243 EWMPLDQ 249
           + + L+ 
Sbjct: 158 DGLQLES 164

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  117 bits (295), Expect = 2e-33
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 92  IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE- 150
            G+L+V V    N+        DP V +    +  +T  V + LNPVWNE L   +    
Sbjct: 6   SGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIP 65

Query: 151 ---YGPVKLEVFDHDTFSADDIMGEAEIDIQPLL 181
                 + + V D +T   + ++G A + ++ L 
Sbjct: 66  LDFSSSLGIIVKDFETIGQNKLIGTATVALKDLT 99

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  111 bits (280), Expect = 3e-31
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 12/114 (10%)

Query: 79  NSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNP 137
              Q    G  ++   + + VV    L  +D   SSDPYV +++G+   +T  +  NLNP
Sbjct: 3   AVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNP 62

Query: 138 VWNEELMLSVPQEYGPVKLEVFDHD-----------TFSADDIMGEAEIDIQPL 180
           VW E            +K+ V D D              +DD +G+  I+++ L
Sbjct: 63  VWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score =  111 bits (278), Expect = 4e-31
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 14/115 (12%)

Query: 88  MVEFIGLLKVKVVKGINLAIRDMM------------SSDPYVVLRLGQQTV-QTTIVKSN 134
           MV F GLLK+K+ + ++L                    DPY+ L +    + QT   +  
Sbjct: 1   MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60

Query: 135 LNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGD 189
            +P W++E +  V      ++L VF       DD +    I  + LL +     +
Sbjct: 61  NSPAWHDEFVTDVCNGR-KIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFE 114

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score =  101 bits (253), Expect = 4e-27
 Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 13/129 (10%)

Query: 81  SQKKDVGMVEFIGLLKVKVVKGINLAIRDM-----------MSSDPYVVLRLGQQTV-QT 128
                 G ++F G L+V++ + + L                   DPY+ + + Q  V QT
Sbjct: 17  RGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQT 76

Query: 129 TIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFG 188
           +  +    P +NEE   +V      ++L VF       D  +    +  Q LL +  A  
Sbjct: 77  STKQKTNKPTYNEEFCANVTDGG-HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASD 135

Query: 189 DPEMFGNMQ 197
             E + +++
Sbjct: 136 TFEGWVDLE 144

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score =  100 bits (250), Expect = 2e-24
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 96  KVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV--PQEYGP 153
            V   +  +L      ++D Y+ +  G Q  +T +V +N NP W +++          GP
Sbjct: 397 VVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGP 456

Query: 154 VKLEVFDHDTFSADDIMGEAEIDIQP 179
           ++++V+D D    DD++G  +     
Sbjct: 457 LRVQVWDADYGWDDDLLGSCDRSPHS 482

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 92.0 bits (229), Expect = 7e-24
 Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 47/160 (29%)

Query: 93  GLLKVKVVKGINLAIRDMM----SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELML 145
               V V++   +          + DPYV L +        +T    +++NPVWNE    
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 146 SVPQEYGPV-KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 204
            +      V ++ + D +    D+ +G A   +  +                        
Sbjct: 63  ILDPNQENVLEITLMDANYVM-DETLGTATFTVSSM------------------------ 97

Query: 205 DDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 244
                             K+++      V    LE+ LE 
Sbjct: 98  --------------KVGEKKEVPFIFNQVTEMVLEMSLEV 123

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 90.1 bits (224), Expect = 7e-23
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS 146
            +L V V    NL   D    SDPYV L+L      +   +T  +K +LNP WNE     
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90

Query: 147 VPQEYGPVKLE--VFDHDTFSADDIMGEAEIDIQPL 180
           + +     +L   ++D D  S +D MG     I  L
Sbjct: 91  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 126

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 88.6 bits (220), Expect = 1e-22
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 95  LKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQTVQTTIVKSNLNPVWNEELMLSVPQEY 151
           +++ V+   NLA +D     DP+  + +    Q   T  VK+ L+P WN+   L V +  
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD 66

Query: 152 GPVKLEVFDHDTFSADD---IMGEAEIDIQPLL 181
             + + V++H           +G   +    + 
Sbjct: 67  -SITISVWNHKKIHKKQGAGFLGCVRLLSNAIS 98

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 83.6 bits (207), Expect = 2e-20
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 15/129 (11%)

Query: 64  QSSFSRKIIDSFRSTNSSQKKDV-GMVEF-------IGLLKVKVVKGINLAIRDMM-SSD 114
            S     I+DS       ++++  G +++          L V +++   L   DM  +SD
Sbjct: 5   ISGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSD 64

Query: 115 PYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGP---VKLEVFDHDTFSADD 168
           PYV + L    ++  +T + +  LNPV+NE+    VP        + + V+D D FS  D
Sbjct: 65  PYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHD 124

Query: 169 IMGEAEIDI 177
           I+GE ++ +
Sbjct: 125 IIGEFKVPM 133

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 86.8 bits (215), Expect = 2e-20
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 14/109 (12%)

Query: 84  KDVGMVEF-------IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVK 132
              G + F          L V++++ ++L  +D    SDPYV + L    ++  QT + +
Sbjct: 4   APCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHR 63

Query: 133 SNLNPVWNEELMLSVPQE---YGPVKLEVFDHDTFSADDIMGEAEIDIQ 178
             LNP++NE    SVP        +   V+D D FS  D++G+  +D  
Sbjct: 64  KTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL 112

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 72.9 bits (179), Expect = 2e-15
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTV-----QTTIVKSNLNPVWNEELMLS 146
           GLL V ++K  NL   D+   SDPYV   L  +       +T+I K+ LNP +NE L+  
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211

Query: 147 VPQEYGP---VKLEVFDHDTFSADDIMGEAEIDIQ 178
           V  E      + + V D+D    ++++G   +  +
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPE 246

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 82.4 bits (204), Expect = 4e-20
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 14/116 (12%)

Query: 76  RSTNSSQKKDVGMVEFI-------GLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQ 124
                S  + +G +++          L V +++   L   DM  +SDPYV + L    ++
Sbjct: 10  GGILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK 69

Query: 125 TVQTTIVKSNLNPVWNEELMLSVPQEYGP---VKLEVFDHDTFSADDIMGEAEIDI 177
             +T + +  LNPV+NE+    VP        + + V+D D FS  DI+GE ++ +
Sbjct: 70  KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 125

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 84.9 bits (210), Expect = 1e-19
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 14/111 (12%)

Query: 84  KDVGMVEFI-------GLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVK 132
           + +G +++          L V +++   L   DM  +SDPYV + L    ++  +T + +
Sbjct: 3   EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR 62

Query: 133 SNLNPVWNEELMLSVPQEYGP---VKLEVFDHDTFSADDIMGEAEIDIQPL 180
             LNPV+NE+    VP        + + V+D D FS  DI+GE ++ +  +
Sbjct: 63  KTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 113

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 72.5 bits (178), Expect = 2e-15
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTV-----QTTIVKSNLNPVWNEELMLS 146
           G L V +++  NL   D+   SDPYV + L Q        +TTI K+ LNP +NE     
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209

Query: 147 VPQEYGP---VKLEVFDHDTFSADDIMGEAEIDIQ 178
           VP E      V + V D+D    +D +G+  +   
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 244

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 80.8 bits (200), Expect = 2e-19
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 16/117 (13%)

Query: 77  STNSSQKKDV-GMVEFI-------GLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQ 124
           S+ SS  ++  G ++F          L VK++K   L  +D   +SDP+V + L    + 
Sbjct: 2   SSGSSGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKH 61

Query: 125 TVQTTIVKSNLNPVWNEELMLS-VPQEYGPVK---LEVFDHDTFSADDIMGEAEIDI 177
            ++T + + NLNP WNE  +    P E    +   L+V D+D FS +D +GE  I +
Sbjct: 62  KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 118

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 80.1 bits (198), Expect = 4e-19
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 19/104 (18%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVVLRL--------------GQQTVQTTIVKSNLNP 137
           G L + +++  NL  RD    SDP+V + L               +   +T  V+ +LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 138 VWNEEL-MLSVPQEYGPVK---LEVFDHDTFSADDIMGEAEIDI 177
            WN+ +   S+  E    K   + V+D+D FS++D +GE  ID+
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 79.3 bits (196), Expect = 5e-19
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 21/135 (15%)

Query: 80  SSQKKDVGMVEFI-------GLLKVKVVKGINLAIRDM--MSSDPYVVLRL---GQQTVQ 127
           SS    +G + F            V + +   L   D   M+SDPY+ + +    +  V+
Sbjct: 2   SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVK 61

Query: 128 TTIVKSNLNPVWNEELMLS-VPQEYGPVK---LEVFDHDTFSADDIMGEAEIDIQPLLTS 183
           T +++  L+P ++E      +P            +   D FS DDI+GE  I +     S
Sbjct: 62  TRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPL-----S 116

Query: 184 ALAFGDPEMFGNMQI 198
            +   + +M  N +I
Sbjct: 117 GIELSEGKMLMNREI 131

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 78.6 bits (194), Expect = 1e-18
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 95  LKVKVVKGINLAIRDMMSSDPYVVLRL----GQQTVQTTIVKSNLNPVWNEELMLSVPQE 150
           L V  ++ +          D YV   +    G    QT + K  L+  W E L+L + +E
Sbjct: 28  LFVTRLEAVTSNHDG--GCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEE 85

Query: 151 YGP---VKLEVFDHDTFSADDIMGEAEIDI 177
             P   + L +   D FS   + GE  + +
Sbjct: 86  ELPTATLTLTLRTCDRFSRHSVAGELRLGL 115

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 78.2 bits (193), Expect = 2e-18
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 17/118 (14%)

Query: 77  STNSSQKKDVGMVEF-------IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQ 123
           S +S Q   +G +EF          L+  +++   L   D    +DPYV L L       
Sbjct: 6   SYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKS 65

Query: 124 QTVQTTIVKSNLNPVWNEELMLS-VPQEYGPVK---LEVFDHDTFSADDIMGEAEIDI 177
             ++T  +++  NPVWNE L    + +E    K   + V D D F  ++ +GE    +
Sbjct: 66  NKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 123

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 82.7 bits (203), Expect = 3e-18
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 9/98 (9%)

Query: 90  EFIGLLKVKVVKGINLAIRDMM----SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEE 142
           ++     V V++   +          + DPYV L +        +T    +++NPVWNE 
Sbjct: 15  QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNET 74

Query: 143 LMLSVPQEYGPV-KLEVFDHDTFSADDIMGEAEIDIQP 179
               +      V ++ + D +    D+ +G A   +  
Sbjct: 75  FEFILDPNQENVLEITLMDANYVM-DETLGTATFTVSS 111

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 77.4 bits (191), Expect = 4e-18
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 10/95 (10%)

Query: 93  GLLKVKVVKGINLAIRDMMS--SDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELML 145
             L V V +   LA  D     S+PYV   L      Q   +T+I +  +NP+++E L  
Sbjct: 23  QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82

Query: 146 SVPQEYGPVK---LEVFDHDTFSADDIMGEAEIDI 177
            +P+     +     V+ H  F  +  +GEAEI +
Sbjct: 83  EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQM 117

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 73.9 bits (182), Expect = 7e-17
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLS 146
             + V ++K  NL   D+  +SDPYV + L  +       +T   K NLNP++NE     
Sbjct: 16  NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75

Query: 147 VPQEYGP---VKLEVFDHDTFSADDIMGEAEIDIQ 178
           +P E      + + V D D  S +D++G+  +  +
Sbjct: 76  IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 73.9 bits (182), Expect = 8e-17
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 17/117 (14%)

Query: 78  TNSSQKKDVGMVEFI-------GLLKVKVVKGINLAIRDMMSSDPYVVLRL-----GQQT 125
           ++ S    +G ++           L V V    NL       SDPYV + L         
Sbjct: 2   SSGSSGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGR 61

Query: 126 VQTTIVKSNLNPVWNEELMLSVPQEYGP---VKLEVFDHDTFSADD--IMGEAEIDI 177
            +T + K  LNPV+++    SV         + + V +   F + D  ++G+  + +
Sbjct: 62  RKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVAL 118

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 74.0 bits (182), Expect = 8e-17
 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 93  GLLKVKVVKGINLAIRDMMSSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSV 147
            +L + +++G  L  +   + DPYV + L       +  +T  V    +P ++E     V
Sbjct: 27  RVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPV 86

Query: 148 PQEYGPVKLE--VFDHDTFS-ADDIMGEAEIDIQPLLTS 183
            +E    +L   V++  + S    ++G     ++ LLT 
Sbjct: 87  QEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTP 125

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 73.2 bits (180), Expect = 1e-16
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 21/122 (17%)

Query: 77  STNSSQKKDVGMVEFI-------GLLKVKVVKGINLAIRDMM--------SSDPYVVLRL 121
           S +S  K  +GM+ F          L V+V++  +L               S+PYV + L
Sbjct: 3   SGSSGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICL 62

Query: 122 ---GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGP---VKLEVFDHDTFSADDIMGEAEI 175
               + + QT + +    PV+ E     +P        + L V D D FS   ++G+  +
Sbjct: 63  LPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSV 122

Query: 176 DI 177
            +
Sbjct: 123 PL 124

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134

 Score = 72.5 bits (178), Expect = 2e-16
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIAS 56
            ++  GN  AN +YEA++PE   +P  D + E    FIR KYE ++++  SL I +
Sbjct: 82  CMQEMGNGKANRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKKYMDRSLDINA 134

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 72.3 bits (178), Expect = 2e-16
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 93  GLLKVKVVKGINLAIRDMMSSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS- 146
           G L + V+   +L   D    +PYV   L          +T I +   NP +NE L+ S 
Sbjct: 20  GTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSG 79

Query: 147 VPQEYGPVK---LEVFDHDTFSADDIMGEAEIDI 177
             +E    +   L V   ++   +  +G   + +
Sbjct: 80  YSKETLRQRELQLSVLSAESLRENFFLGGITLPL 113

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 72.5 bits (178), Expect = 4e-16
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLS 146
           G L V +++  NL   D+   SDPYV + L Q        +TTI K+ LNP +NE     
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 147 VPQEYGP---VKLEVFDHDTFSADDIMGEAEIDIQ 178
           VP E      V + V D+D    +D +G+  +   
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 119

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 71.6 bits (176), Expect = 8e-16
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTV-----QTTIVKSNLNPVWNEELMLS 146
           G L V +++ ++LA  D    SDP+V L L          +T I K  LNP +NEE    
Sbjct: 37  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96

Query: 147 VPQE-YGPVKLE--VFDHDTFSADDIMGEAEIDI 177
           +         L+  V+D+D   ++D +G  ++ I
Sbjct: 97  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI 130

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 70.0 bits (172), Expect = 1e-15
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 12/103 (11%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS 146
             L V ++   +L  R+     +PYV +        +   +T  VK  L P WN+  + S
Sbjct: 18  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77

Query: 147 -VPQEYGPVK---LEVFDHDTFSAD--DIMGEAEIDIQPLLTS 183
            V +     +   + ++D      +  + +GE  I+++  L  
Sbjct: 78  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 120

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 70.2 bits (172), Expect = 2e-15
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPS 60
            ++  GN+ A  +YEA +PE   +P  D + E    FIR KYE +++   +    SG  S
Sbjct: 84  CMQDMGNTKARLLYEANLPENFRRPQTDQAVE---FFIRDKYEKKKYYDKNAIAISGPSS 140

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 69.7 bits (171), Expect = 3e-15
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 12/103 (11%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS 146
             L V ++   +L  R+     +PYV +        +   +T  VK  L P WN+  + S
Sbjct: 21  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80

Query: 147 -VPQEYGPVK---LEVFDHDTFSAD--DIMGEAEIDIQPLLTS 183
            V +     +   + ++D      +  + +GE  I+++  L  
Sbjct: 81  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 123

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 69.2 bits (169), Expect = 4e-15
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 14/123 (11%)

Query: 93  GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYG 152
            LL V V K      ++    + YV L++      TTI      P W ++ M  + +   
Sbjct: 5   SLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVK-STTIAVRGSQPSWEQDFMFEINRLDL 61

Query: 153 PVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLED 212
            + +EV++      D ++G   I ++ +  S               G+WL  D  A++ D
Sbjct: 62  GLTVEVWNKGLIW-DTMVGTVWIPLRTIRQS----------NEEGPGEWLTLDSQAIMAD 110

Query: 213 STI 215
           S I
Sbjct: 111 SEI 113

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 69.8 bits (171), Expect = 4e-15
 Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 93  GLLKVKVVKGINLAIRDM-MSSDPYVVLRL------GQQTVQTTIVKSNLNPVWNEELML 145
               + +++  NL+           + + +           +T  + ++   V+NE   +
Sbjct: 43  KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102

Query: 146 SVPQEYGPVK---LEVFDHDTFSADDIMGEAEIDI 177
           S+       K   ++V   D    ++ +G A+I +
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISL 137

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 69.3 bits (170), Expect = 5e-15
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 9/94 (9%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLS 146
             L V V+K  +L   D+   SDPYV + L          +T + K   N V+NE  +  
Sbjct: 30  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89

Query: 147 VPQEYGP---VKLEVFDHDTFSADDIMGEAEIDI 177
           +P E      V+  V D +  S ++++G   +  
Sbjct: 90  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA 123

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 72.1 bits (176), Expect = 8e-15
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 1   MIEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKP 59
           ++   GN   N IYEA +    V KPGP  S + +  +I +KY  ++FL     I   + 
Sbjct: 100 LMCELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLPEIRGRRG 159

Query: 60  SASLQSSFSRKIIDSFRSTNSSQKKD 85
                                   + 
Sbjct: 160 GRGRPRGQPPVPPKPSIRPRPGSLRS 185

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score = 69.7 bits (170), Expect = 6e-14
 Identities = 20/77 (25%), Positives = 33/77 (42%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPS 60
            +   GN +A A +E+ +P    +P P     +R ++IR+KYE QEF+ P  +       
Sbjct: 88  FMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQEPYSAGY 147

Query: 61  ASLQSSFSRKIIDSFRS 77
                    +    F S
Sbjct: 148 REGFLWKRGRDNGQFLS 164

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 66.4 bits (162), Expect = 1e-13
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 93  GLLKVKVVKGINLAIRDM--MSSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELML 145
           G L+V+V++  +L  +     +  PYV + L          +T I +  L+P++ + L+ 
Sbjct: 30  GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89

Query: 146 SVPQEYGPVKLEVF-DHDTFSADDIMGEAEIDI 177
               +   +++ V+ D+        MG A+I +
Sbjct: 90  DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILL 122

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 62.3 bits (151), Expect = 2e-12
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 14/127 (11%)

Query: 90  EFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ 149
             + LL V V K      ++    + YV L++      TTI      P W ++ M  + +
Sbjct: 11  GILSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVES-TTIAVRGSQPSWEQDFMFEINR 67

Query: 150 EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNAL 209
               + +EV++      D ++G   I ++ +  S               G+WL  D  A+
Sbjct: 68  LDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQS----------NEEGPGEWLTLDSQAI 116

Query: 210 LEDSTIN 216
           + DS I 
Sbjct: 117 MADSEIC 123

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 61.9 bits (150), Expect = 1e-11
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 1   MIEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKP 59
           +    GN+S N + EA +P  G  KP  +S    R  +I +KY    F +          
Sbjct: 97  LALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEPQRLW 156

Query: 60  SASLQSSFSRKIIDSFRSTNSSQ 82
           +A         +       +  Q
Sbjct: 157 TAICNRDLLSVLEAFANGQDFGQ 179

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140

 Score = 58.7 bits (142), Expect = 3e-11
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPS 60
            ++  GN     I+     +  S        +   +F++ KYE + +  P       K  
Sbjct: 79  FLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP---PEQAKVV 135

Query: 61  ASLQS 65
           AS+ +
Sbjct: 136 ASVHA 140

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 60.4 bits (146), Expect = 4e-11
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSK-PGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKP 59
           + +  GN+  N I E  +P      P P S    R  +I +KY  + + +      + K 
Sbjct: 72  LAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKL 131

Query: 60  SASLQSSFSRKIIDSFRSTNSS 81
            +  ++  +R I    ++    
Sbjct: 132 HSLCEAVKTRDIFGLLQAYADG 153

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 58.4 bits (141), Expect = 4e-10
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 6   GNSSANAIYEAFIP-EGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS 51
           GN+S N + EA +P  G  KP  +S    R  +I +KY    F +  
Sbjct: 83  GNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYE 43
            +++GGN  A   ++  +    S      + E  S     +Y+
Sbjct: 91  RMDIGGNGRARNYFKQVLGVNFSPK----TKEYASSICGRQYK 129

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 9/124 (7%)

Query: 69  RKIIDSFRSTNSSQKKDVGMV-----EFIGLLKVKVVKGINL-AIRDMMSSDPYVVLRLG 122
           +   + +  T   Q++            IG L V V++   L A +    S+PY  + +G
Sbjct: 358 KAASEQYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMG 417

Query: 123 QQTVQTTIVKSNLNPVWN--EELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPL 180
            Q+  T  ++  LNP WN   +  +    +   + L +FD D FS DD +G  EI +  +
Sbjct: 418 SQSYTTRTIQDTLNPKWNFNCQFFIKDLYQ-DVLCLTLFDRDQFSPDDFLGRTEIPVAKI 476

Query: 181 LTSA 184
            T  
Sbjct: 477 RTEQ 480

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 43.4 bits (102), Expect = 8e-06
 Identities = 10/93 (10%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 95  LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPV-WNEEL--MLSVPQEY 151
           L V +     L  R    +D    +    Q+  + ++++  +   ++E     ++   + 
Sbjct: 23  LIVHLKTVSELRGR----ADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDR 78

Query: 152 G-PVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 183
              +++++F++    ++ ++G   + +Q ++  
Sbjct: 79  NEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEE 111

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 44/318 (13%), Positives = 88/318 (27%), Gaps = 101/318 (31%)

Query: 11  NAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFL-----KPSLRIASGKPSASLQS 65
             +     P   S    D S  I+ +    + EL+  L     +  L +        L +
Sbjct: 203 QKLLYQIDPNWTS--RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--------LLN 252

Query: 66  SFSRKIIDSF----------RSTN------SSQKKDVGMVE----------------FIG 93
             + K  ++F          R         ++    + +                  ++ 
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 94  L----LKVKVVKGINLAI-------RDMMS-SDPYVVLRLGQQTVQTTIVKS--NLNPVW 139
                L  +V+      +       RD ++  D +    +    + T I  S   L P  
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLEP-- 368

Query: 140 NEELMLSVPQEYGPVKLEVFDHD------TFS---ADDIMGEAEIDIQPLLTSALAFGDP 190
             E      + +   +L VF           S    D I  +  + +  L   +L    P
Sbjct: 369 -AEYR----KMF--DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 191 EMFG----NMQIGKWLKSDDNALL----------------EDSTINIIDGKVKQKISLKL 230
           +       ++ +   +K ++   L                +D     +D      I   L
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 231 QNVESGELELELEWMPLD 248
           +N+E  E       + LD
Sbjct: 482 KNIEHPERMTLFRMVFLD 499

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSS---HEIRSKFIRSKYELQEFLKPSLRIASG 57
            I+ GGN       E +            +      R   +RS     +   P L +  G
Sbjct: 77  YIDKGGNKKCQTYLENYGISDFIPERKYRTKAADHYRKI-LRSIVHNVDPPAP-LPLDEG 134

Query: 58  KPSASLQSSFSRKIIDSFRSTNSSQKKD 85
           K   +   + +    ++ ++  S+++ D
Sbjct: 135 KSLINYGRNENVN--ENNKNQYSNEEPD 160

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 20/164 (12%), Positives = 38/164 (23%), Gaps = 17/164 (10%)

Query: 95  LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIV----KSNLNPVWNEELMLSVPQE 150
           LK+ +++   L  +       Y  L L       T       S     W E    +    
Sbjct: 13  LKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA 68

Query: 151 YGPVKLEVF----DHDTFSADDIMGEAEIDIQPLLTSALAFG-----DPEMFGNMQIGKW 201
              ++L ++              +G   + +  L              P   G       
Sbjct: 69  VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGS 128

Query: 202 LKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM 245
                +              V+ K   +  ++   EL  E    
Sbjct: 129 GGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEY 172

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 4/55 (7%)

Query: 1   MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKY----ELQEFLKPS 51
            ++ GGN+      E+           +  +   +   R K     E +E+   S
Sbjct: 93  KMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLES 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.91
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.91
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.91
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.91
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.9
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.89
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.89
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.89
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.88
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.88
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.85
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.85
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.84
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.84
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.84
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.84
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.84
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.84
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.84
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.83
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.83
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.83
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.83
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.83
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.82
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.82
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.81
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.81
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.81
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.81
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.8
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.8
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.79
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.79
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.79
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.76
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.76
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.76
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.74
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.74
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.73
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.67
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.67
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.65
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.59
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.49
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.33
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.33
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.33
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.33
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.28
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	99.12
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	99.1
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.0
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	98.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	98.76
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	98.02
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	97.97
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	97.95
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	94.82
2owa_A	138	Arfgap-like finger domain containing protein; zinc	94.68
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	94.66
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	94.31
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	92.69
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	91.93
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	89.59
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	85.47
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	83.74

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.91  E-value=6.5e-24  Score=160.26  Aligned_cols=128  Identities=28%  Similarity=0.470  Sum_probs=109.8

Q ss_pred             cccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecC
Q 025708           84 KDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHD  162 (249)
Q Consensus        84 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~  162 (249)
                      .+..+....|.|+|+|++|++|+..+.. .+||||++.++.++++|++++++.||.|||+|.|.+......|.|+|||++
T Consensus         4 ~s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d   83 (133)
T 2ep6_A            4 GSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDED   83 (133)
T ss_dssp             CCCCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEE
T ss_pred             ccccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECC
Confidence            4567888999999999999999998875 899999999999999999999999999999999999876678999999999


Q ss_pred             CCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEE
Q 025708          163 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELEL  242 (249)
Q Consensus       163 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l  242 (249)
                      .+++|++||++.++|.++..+              ...||++....                     ......|+|+|++
T Consensus        84 ~~~~~~~lG~~~i~l~~l~~~--------------~~~w~~L~~~~---------------------~~~~~~G~i~l~i  128 (133)
T 2ep6_A           84 GDKPPDFLGKVAIPLLSIRDG--------------QPNCYVLKNKD---------------------LEQAFKGVIYLEM  128 (133)
T ss_dssp             TTEEEEECCBCEEEGGGCCSS--------------CCEECCCBCSC---------------------TTSCCSSEEEEEE
T ss_pred             CCCCCCeeEEEEEEHHHccCC--------------CceEEEeecCC---------------------CCCccceEEEEEE
Confidence            998999999999999998421              13788865431                     1234679999999


Q ss_pred             EEEe
Q 025708          243 EWMP  246 (249)
Q Consensus       243 ~~~~  246 (249)
                      +|+.
T Consensus       129 ~~~~  132 (133)
T 2ep6_A          129 DLIY  132 (133)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9864

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.91  E-value=2.4e-23  Score=157.59  Aligned_cols=127  Identities=26%  Similarity=0.412  Sum_probs=109.0

Q ss_pred             ccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeec-CcCCceeeeeEEEEeeCCCccEEEEEEecCCC
Q 025708           87 GMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQEYGPVKLEVFDHDTF  164 (249)
Q Consensus        87 ~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~-~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~  164 (249)
                      +.....|.|+|+|++|++|+..+.. .+||||+++++.++++|++++ ++.||.|||+|.|.+......|.|+|||++.+
T Consensus         4 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~   83 (136)
T 1wfj_A            4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG   83 (136)
T ss_dssp             CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred             CCCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCC
Confidence            3456789999999999999998865 899999999999999999998 89999999999999988678999999999999


Q ss_pred             CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708          165 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  244 (249)
Q Consensus       165 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  244 (249)
                      ++|++||++.|+|.++....           .....||++.                        ......|+|+|+++|
T Consensus        84 ~~d~~lG~~~i~l~~l~~~~-----------~~~~~w~~L~------------------------~~~~~~G~i~l~l~~  128 (136)
T 1wfj_A           84 TEDDAVGEATIPLEPVFVEG-----------SIPPTAYNVV------------------------KDEEYKGEIWVALSF  128 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHS-----------EEEEEEEEEE------------------------ETTEEEEEEEEEEEE
T ss_pred             CCCceEEEEEEEHHHhccCC-----------CCCcEEEEee------------------------cCCccCEEEEEEEEE
Confidence            99999999999999995432           3456788721                        133457999999999


Q ss_pred             EeCC
Q 025708          245 MPLD  248 (249)
Q Consensus       245 ~~~~  248 (249)
                      .|..
T Consensus       129 ~p~~  132 (136)
T 1wfj_A          129 KPSG  132 (136)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            9864

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.91  E-value=3.5e-23  Score=160.26  Aligned_cols=122  Identities=23%  Similarity=0.435  Sum_probs=101.9

Q ss_pred             ccceeeeEEEEEEEEeecCCCCCC-----------CCCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCCccE
Q 025708           87 GMVEFIGLLKVKVVKGINLAIRDM-----------MSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPV  154 (249)
Q Consensus        87 ~~~~~~g~L~V~v~~a~~L~~~~~-----------~~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L  154 (249)
                      ++....|.|+|+|++|++|+++|.           +.+||||++.++.++ .+|+++++|+||.|||+|.|.+... ..|
T Consensus        23 ~~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~-~~L  101 (157)
T 2fk9_A           23 GTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-GHL  101 (157)
T ss_dssp             -CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEE
T ss_pred             hhccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCC-CEE
Confidence            456788999999999999998872           358999999998866 6999999999999999999998763 689


Q ss_pred             EEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEecccc
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVE  234 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~  234 (249)
                      .|+|||++.+++|++||++.|+|.++..+.+        .+...+.||+                          |+  +
T Consensus       102 ~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~--------~~~~~~~W~~--------------------------L~--~  145 (157)
T 2fk9_A          102 ELAVFHETPLGYDHFVANCTLQFQELLRTTG--------ASDTFEGWVD--------------------------LE--P  145 (157)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHHHHHT--------TCSEEEEEEE--------------------------CB--S
T ss_pred             EEEEEECCCCCCCCEEEEEEEEHHHhhcccC--------CCCcccEEEE--------------------------CC--C
Confidence            9999999999999999999999999975421        1235677776                          43  3


Q ss_pred             CceEEEEEEEE
Q 025708          235 SGELELELEWM  245 (249)
Q Consensus       235 ~G~i~l~l~~~  245 (249)
                      +|+|+|+++|.
T Consensus       146 ~G~i~l~l~~~  156 (157)
T 2fk9_A          146 EGKVFVVITLT  156 (157)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CcEEEEEEEEE
Confidence            79999999883

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=6e-23  Score=156.19  Aligned_cols=125  Identities=22%  Similarity=0.321  Sum_probs=103.5

Q ss_pred             eeeeEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEEecCCCC
Q 025708           90 EFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDTFS  165 (249)
Q Consensus        90 ~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~d~~~~~  165 (249)
                      ...|.|.|+|++|++|+..+.+.+||||+++++.++++|++++++.||+|||+|.|.+..    ....|.|+|||++.++
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~   83 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG   83 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSS
T ss_pred             CCCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCC
Confidence            457899999999999998877778999999999999999999999999999999999864    3578999999999999


Q ss_pred             CCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEe---cCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEE
Q 025708          166 ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK---SDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELEL  242 (249)
Q Consensus       166 ~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~---~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l  242 (249)
                      +|++||++.++|.++..            +.....|++   +.+.           .           .....|+|+|++
T Consensus        84 ~~~~lG~~~i~l~~l~~------------~~~~~~w~~l~~l~~~-----------~-----------~~~~~G~l~l~~  129 (140)
T 2dmh_A           84 QNKLIGTATVALKDLTG------------DQSRSLPYKLISLLNE-----------K-----------GQDTGATIDLVI  129 (140)
T ss_dssp             SCCCCEEEEEEGGGTCS------------SSCEEEEEEEEEEECT-----------T-----------CCEEEEEEEEEE
T ss_pred             CCceEEEEEEEHHHhcc------------CCCceeEEeeeeccCC-----------C-----------CCCCCCEEEEEE
Confidence            99999999999999843            234567875   2111           0           012349999999


Q ss_pred             EEEeCC
Q 025708          243 EWMPLD  248 (249)
Q Consensus       243 ~~~~~~  248 (249)
                      +|.|..
T Consensus       130 ~~~p~~  135 (140)
T 2dmh_A          130 GYDPPS  135 (140)
T ss_dssp             EECCCB
T ss_pred             EEECCC
Confidence            998853

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.90  E-value=2.4e-22  Score=154.28  Aligned_cols=124  Identities=27%  Similarity=0.520  Sum_probs=102.8

Q ss_pred             ccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCC-
Q 025708           87 GMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTF-  164 (249)
Q Consensus        87 ~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~-  164 (249)
                      +...+.|.|.|+|++|++|+..+.. .+||||++.++.+.++|+++++++||.|||+|.|.+......|.|+|||++.+ 
T Consensus        11 ~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~   90 (148)
T 3kwu_A           11 GTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDI   90 (148)
T ss_dssp             ----CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSH
T ss_pred             cccccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCc
Confidence            3455689999999999999998875 89999999999999999999999999999999999987668899999999986 


Q ss_pred             ----------CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEecccc
Q 025708          165 ----------SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVE  234 (249)
Q Consensus       165 ----------~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~  234 (249)
                                +.|++||++.++|.++.              ...+.||+|....                     -....
T Consensus        91 ~~~~~~~~~~~~~~~lG~~~i~l~~l~--------------~~~~~w~~L~~~~---------------------~~~~~  135 (148)
T 3kwu_A           91 KSRVKQRFKRESDDFLGQTIIEVRTLS--------------GEMDVWYNLDKRT---------------------DKSAV  135 (148)
T ss_dssp             HHHHHTTTSSCSSEEEEEEEEEGGGCC--------------SEEEEEEECBCSS---------------------TTCCC
T ss_pred             cccccccccCCCCccEEEEEEEHHHCc--------------CCCCEEEEcccCC---------------------CCCCC
Confidence                      78999999999999882              1357898865320                     01235


Q ss_pred             CceEEEEEEEE
Q 025708          235 SGELELELEWM  245 (249)
Q Consensus       235 ~G~i~l~l~~~  245 (249)
                      .|+|+|+++|.
T Consensus       136 ~G~i~l~l~~e  146 (148)
T 3kwu_A          136 SGAIRLHISVE  146 (148)
T ss_dssp             CCEEEEEEEEE
T ss_pred             ceEEEEEEEEE
Confidence            69999998874

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.89  E-value=1.7e-22  Score=153.07  Aligned_cols=118  Identities=24%  Similarity=0.490  Sum_probs=99.4

Q ss_pred             eeeeEEEEEEEEeecCCCCCCC-C-----------CCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEE
Q 025708           90 EFIGLLKVKVVKGINLAIRDMM-S-----------SDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKL  156 (249)
Q Consensus        90 ~~~g~L~V~v~~a~~L~~~~~~-~-----------~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i  156 (249)
                      ...|.|+|+|++|++|++.+.. .           +||||++.++... .+|+++++|+||.|||+|.|.+... ..|.|
T Consensus         3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~   81 (136)
T 1gmi_A            3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIEL   81 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEE
T ss_pred             ccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEE
Confidence            4679999999999999987742 3           8999999998766 6999999999999999999998765 78999


Q ss_pred             EEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCc
Q 025708          157 EVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESG  236 (249)
Q Consensus       157 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G  236 (249)
                      +|||++.+++|++||.+.++|.++....          ....+.|++                          |+  ++|
T Consensus        82 ~V~d~d~~~~dd~iG~~~i~l~~l~~~~----------~~~~~~w~~--------------------------L~--~~G  123 (136)
T 1gmi_A           82 AVFHDAPIGYDDFVANCTIQFEELLQNG----------SRHFEDWID--------------------------LE--PEG  123 (136)
T ss_dssp             EEEECCSSSSCEEEEEEEEEHHHHTSTT----------CSEEEEEEE--------------------------CB--SSC
T ss_pred             EEEeCCCCCCCCEEEEEEEEHHHhcccC----------CCCccEEEE--------------------------cC--CCe
Confidence            9999999999999999999999985431          123466765                          33  379


Q ss_pred             eEEEEEEEEe
Q 025708          237 ELELELEWMP  246 (249)
Q Consensus       237 ~i~l~l~~~~  246 (249)
                      +|+|+++|.+
T Consensus       124 ~i~l~l~~~~  133 (136)
T 1gmi_A          124 KVYVIIDLSG  133 (136)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEe
Confidence            9999999875

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.89  E-value=1.7e-22  Score=156.06  Aligned_cols=131  Identities=31%  Similarity=0.541  Sum_probs=101.3

Q ss_pred             ceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC------eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEec
Q 025708           89 VEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDH  161 (249)
Q Consensus        89 ~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~------~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~  161 (249)
                      ....+.|+|+|++|++|+..+.. .+||||++++..      ..++|++++++.||.|||+|.|.+......|.|+|||+
T Consensus        16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~   95 (153)
T 3b7y_A           16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDE   95 (153)
T ss_dssp             CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEEC
T ss_pred             CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEEC
Confidence            34578999999999999998865 899999999963      56899999999999999999999987767899999999


Q ss_pred             CCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEE
Q 025708          162 DTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELE  241 (249)
Q Consensus       162 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~  241 (249)
                      +.+++|++||++.|+|.++..+....      .......||+|....                     -.....|+|+|+
T Consensus        96 d~~~~d~~iG~~~i~l~~l~~~~~~~------~~~~~~~w~~L~~~~---------------------~~~~~~G~i~l~  148 (153)
T 3b7y_A           96 NRLTRDDFLGQVDVPLYPLPTENPRL------ERPYTFKDFVLHPRS---------------------HKSRVKGYLRLK  148 (153)
T ss_dssp             CSSSCCEEEEEEEEECCSCCBCCTTS------CCCCCCEEEECBCSS---------------------TTCCCCSEEEEE
T ss_pred             CCCcCCCeeEEEEEEHHHcccCCCcc------ccccccccccccccc---------------------CCCCcceEEEEE
Confidence            99999999999999999986543210      011235898864421                     012357999999


Q ss_pred             EEEEe
Q 025708          242 LEWMP  246 (249)
Q Consensus       242 l~~~~  246 (249)
                      ++|+|
T Consensus       149 l~~~P  153 (153)
T 3b7y_A          149 MTYLP  153 (153)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            99987

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.89  E-value=3.4e-22  Score=157.56  Aligned_cols=132  Identities=20%  Similarity=0.336  Sum_probs=102.9

Q ss_pred             ceeeeEEEEEEEEeecCC-CCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCC
Q 025708           89 VEFIGLLKVKVVKGINLA-IRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSAD  167 (249)
Q Consensus        89 ~~~~g~L~V~v~~a~~L~-~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d  167 (249)
                      ....+.|.|+|++|++|+ ..+.+.+||||++.++.++++|+++++++||+|||+|.|.+.. ...|.|+|||++.+++|
T Consensus        32 ~~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~d  110 (173)
T 2nq3_A           32 LTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSD  110 (173)
T ss_dssp             CSCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCC
T ss_pred             cCCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCC
Confidence            345788999999999999 5555579999999999989999999999999999999999864 67899999999999999


Q ss_pred             CeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEeC
Q 025708          168 DIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPL  247 (249)
Q Consensus       168 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~  247 (249)
                      ++||++.++|.++..+....       ...+..|++|...                     .-.....|+|+|.|.++++
T Consensus       111 d~lG~~~i~l~~l~~~~~~~-------~~~~~~~~~L~~~---------------------~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          111 VLLGTAALDIYETLKSNNMK-------LEEVVVTLQLGGD---------------------KEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             EEEEEEEEEHHHHHHHTTTE-------ESSEEEEEEEEES---------------------SCTTSEEEEEEEEEESEEC
T ss_pred             ceEEEEEEEHHHhcccCCCC-------cceeEEEEECccC---------------------CCCCcccEEEEEEEeeeec
Confidence            99999999999997653211       1123456653221                     0012246999999999988


Q ss_pred             CC
Q 025708          248 DQ  249 (249)
Q Consensus       248 ~~  249 (249)
                      ++
T Consensus       163 ~~  164 (173)
T 2nq3_A          163 ES  164 (173)
T ss_dssp             C-
T ss_pred             ch
Confidence            64

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.88  E-value=5.1e-22  Score=156.99  Aligned_cols=131  Identities=31%  Similarity=0.535  Sum_probs=97.2

Q ss_pred             eeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC------eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecC
Q 025708           90 EFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHD  162 (249)
Q Consensus        90 ~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~------~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~  162 (249)
                      ...|.|.|+|++|++|+..+.. .+||||+++++.      .+++|+++++++||.|||+|.|.+......|.|+|||++
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d   84 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDEN   84 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECC
Confidence            4579999999999999998875 899999999964      568999999999999999999999876678999999999


Q ss_pred             CCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEE
Q 025708          163 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELEL  242 (249)
Q Consensus       163 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l  242 (249)
                      .+++|++||++.|+|..+..+....+      ......||+|....                     -.....|+|+|+|
T Consensus        85 ~~~~d~~lG~~~i~l~~l~~~~~~~~------~~~~~~w~~L~~~~---------------------~~~~~~G~l~l~l  137 (176)
T 3m7f_B           85 RLTRDDFLGQVDVPLYPLPTENPRME------RPYTFKDFVLHPRS---------------------HKSRVKGYLRLKM  137 (176)
T ss_dssp             ----CEEEEEEEEESCSCCBC------------CCCCEEEECBCSS---------------------TTCCCCSEEEEEE
T ss_pred             CCCCCcEEEEEEEEHHHccccCCccc------ccccccEEEccccC---------------------CCCccCEEEEEEE
Confidence            99999999999999999965432110      00122688865420                     0223479999999


Q ss_pred             EEEeC
Q 025708          243 EWMPL  247 (249)
Q Consensus       243 ~~~~~  247 (249)
                      .|+|.
T Consensus       138 ~~~p~  142 (176)
T 3m7f_B          138 TYLPK  142 (176)
T ss_dssp             EECC-
T ss_pred             EEEeC
Confidence            99874

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.88  E-value=3.8e-22  Score=148.97  Aligned_cols=89  Identities=22%  Similarity=0.443  Sum_probs=79.1

Q ss_pred             eeEEEEEEEEeecCCCC---CC-CCCCcEEEEEECC---eEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCC
Q 025708           92 IGLLKVKVVKGINLAIR---DM-MSSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDT  163 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~---~~-~~~dpyv~v~l~~---~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~  163 (249)
                      .|.|+|+|++|++|+.+   +. +.+||||++.+++   .+++|++++++.||+|||+|.|.+.. ....|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            47899999999999985   33 3789999999975   67899999999999999999999964 56789999999998


Q ss_pred             CCCCCeeEEEEEechhhh
Q 025708          164 FSADDIMGEAEIDIQPLL  181 (249)
Q Consensus       164 ~~~d~~iG~~~i~l~~l~  181 (249)
                      + +|++||++.++|.++.
T Consensus        82 ~-~~~~iG~~~i~l~~l~   98 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMK   98 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSC
T ss_pred             C-CCceeEEEEEEHHHcc
Confidence            7 4899999999999984

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.85  E-value=7.8e-21  Score=143.64  Aligned_cols=109  Identities=20%  Similarity=0.314  Sum_probs=91.7

Q ss_pred             cccceeeeEEEEEEEEeecCCCCCCCCCCcEEEEEE-----CCeEEeeeeecCcCCceeeeeEEEE-eeC---CCccEEE
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKL  156 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l-----~~~~~kT~~~~~t~~P~W~e~f~f~-v~~---~~~~L~i  156 (249)
                      ..+....+.|.|+|++|++|+....+.+||||++++     ...+++|+++++++||+|||+|.|. +..   ....|.|
T Consensus        13 ~~~~~~~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~   92 (134)
T 2b3r_A           13 LSVSYRNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQL   92 (134)
T ss_dssp             EEEEEETTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEE
T ss_pred             EEEeecCCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEE
Confidence            455667899999999999999733348999999999     3457899999999999999999999 754   3578999


Q ss_pred             EEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          157 EVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       157 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      +|||++.++++++||++.++|.++..            +.....||+|..
T Consensus        93 ~V~d~d~~~~~~~lG~~~i~l~~l~~------------~~~~~~W~~L~~  130 (134)
T 2b3r_A           93 SVLSAESLRENFFLGGITLPLKDFNL------------SKETVKWYQLTA  130 (134)
T ss_dssp             EEEECCSSSCCEEEEEEEEEGGGSCT------------TSCEEEEEECBC
T ss_pred             EEEECCCCCCCcEEEEEEEEhhhccC------------CCCcceeEECCC
Confidence            99999999999999999999999843            235678998654

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.85  E-value=1.4e-20  Score=145.43  Aligned_cols=116  Identities=18%  Similarity=0.324  Sum_probs=96.8

Q ss_pred             CccccccceeeeEEEEEEEEeecCCCCCCCCCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEEeeC--CCccE
Q 025708           82 QKKDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPV  154 (249)
Q Consensus        82 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L  154 (249)
                      ...++.|....+.|.|+|++|++|+..+.+.+||||++.+.     ..+++|+++++++||.|||+|.|.+..  ....|
T Consensus        16 ~~lsL~y~~~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L   95 (153)
T 3fbk_A           16 GQLRLSIDAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRL   95 (153)
T ss_dssp             CEEEEEEEESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEE
T ss_pred             EEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEE
Confidence            34457788889999999999999999985589999999993     356899999999999999999999843  44569


Q ss_pred             EEEEEecCCCCC-CCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCc
Q 025708          155 KLEVFDHDTFSA-DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNA  208 (249)
Q Consensus       155 ~i~V~d~~~~~~-d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~  208 (249)
                      .|+|||++.+++ |++||++.++|.++..           .+.....||+|....
T Consensus        96 ~i~V~d~d~~~~~d~~lG~~~i~l~~l~~-----------~~~~~~~W~~L~~~~  139 (153)
T 3fbk_A           96 LVTVWNRASQSRQSGLIGCMSFGVKSLLT-----------PDKEISGWYYLLGEH  139 (153)
T ss_dssp             EEEEEECCSSGGGCEEEEEEEEEHHHHTC-------------CCEEEEEECBCTT
T ss_pred             EEEEEeCCCCCCCCcEEEEEEEEHHHhcC-----------CCCccccEEECCChh
Confidence            999999999877 8999999999999843           134577899976653

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.84  E-value=7.7e-20  Score=137.60  Aligned_cols=91  Identities=22%  Similarity=0.400  Sum_probs=81.2

Q ss_pred             eeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC--eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCC--
Q 025708           92 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ--QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSA--  166 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~--~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~--  166 (249)
                      ...|+|+|++|++|+..+.. .+||||++.++.  +.++|+++++++||.|||+|.|.+... ..|.|+|||++.+++  
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~l~~~v~d~d~~~~~~   82 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT-DSITISVWNHKKIHKKQ   82 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT-CCEEEEEEEGGGTTSST
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC-CEEEEEEEECCCCCCCC
Confidence            46799999999999998876 899999999964  779999999999999999999999875 459999999999876  


Q ss_pred             -CCeeEEEEEechhhhhh
Q 025708          167 -DDIMGEAEIDIQPLLTS  183 (249)
Q Consensus       167 -d~~iG~~~i~l~~l~~~  183 (249)
                       |++||++.+++..+...
T Consensus        83 ~d~~lG~~~i~l~~l~~~  100 (132)
T 3pyc_A           83 GAGFLGCVRLLSNAISRL  100 (132)
T ss_dssp             TTTEEEEEEECHHHHHHH
T ss_pred             CCCceEEEEEeHHHhhcc
Confidence             89999999999988443

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.84  E-value=1.4e-20  Score=145.14  Aligned_cols=110  Identities=27%  Similarity=0.434  Sum_probs=94.0

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEE---CCeEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLE  157 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~~~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~  157 (249)
                      ++.|....+.|+|+|++|++|+..+.. .+||||++++   +...++|++++++.||+|||+|.|.+..   ....|.|+
T Consensus        34 ~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~  113 (152)
T 1rsy_A           34 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMA  113 (152)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEE
T ss_pred             EEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEE
Confidence            345556679999999999999998875 8999999999   3457899999999999999999999864   35789999


Q ss_pred             EEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          158 VFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       158 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      |||++.+++|++||++.++|.++.            .+.....||+|..
T Consensus       114 V~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~W~~L~~  150 (152)
T 1rsy_A          114 VYDFDRFSKHDIIGEFKVPMNTVD------------FGHVTEEWRDLQS  150 (152)
T ss_dssp             EEECCSSSCCEEEEEEEEEGGGCC------------CSSCEEEEEECBC
T ss_pred             EEECCCCCCCcEEEEEEEEchhcc------------CCCCcceEEECCC
Confidence            999999999999999999999983            2335789998644

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.84  E-value=9.5e-21  Score=147.16  Aligned_cols=121  Identities=29%  Similarity=0.370  Sum_probs=97.2

Q ss_pred             cccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeCC---CccEEE
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKL  156 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~~---~~~L~i  156 (249)
                      +.|....+.|.|+|++|++|+..+.. .+||||++++..     .+++|+++++++||.|||+|.|.+...   ...|.|
T Consensus        18 l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i   97 (159)
T 1tjx_A           18 LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVV   97 (159)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEE
T ss_pred             EEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEE
Confidence            45666789999999999999998875 899999999952     468999999999999999999998653   357999


Q ss_pred             EEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          157 EVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       157 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      +|||++.+++|++||.+.|+|..+..+.+++.......+..+..|++|..
T Consensus        98 ~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~  147 (159)
T 1tjx_A           98 TVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (159)
T ss_dssp             EEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             EEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence            99999999999999999999997644433322111134567789998654

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.84  E-value=3.8e-21  Score=145.61  Aligned_cols=120  Identities=24%  Similarity=0.378  Sum_probs=98.6

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeCCC---ccEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEY---GPVK  155 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~~~---~~L~  155 (249)
                      ++.|....+.|.|+|++|++|+..+.. .+||||++++..     .+++|++++++.||.|||+|.|.+....   ..|.
T Consensus         8 sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~   87 (138)
T 3n5a_A            8 SLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTII   87 (138)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEE
T ss_pred             EEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEE
Confidence            345666779999999999999998876 899999999953     4689999999999999999999987632   5799


Q ss_pred             EEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          156 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      |+|||++.+++|++||++.++|.++..+..++.......+..+..|++|
T Consensus        88 ~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L  136 (138)
T 3n5a_A           88 ITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQL  136 (138)
T ss_dssp             EEEEECCSSSCCEEEEEEEESSSSCHHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred             EEEEECCCCCCCcEEEEEEEccccCChHHHHHHHHHhCCCCeEEEEeec
Confidence            9999999999999999999999987655544332223456678888874

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.84  E-value=7.7e-21  Score=146.11  Aligned_cols=103  Identities=31%  Similarity=0.451  Sum_probs=89.1

Q ss_pred             eeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEEeeCC--CccEEEEEEecC
Q 025708           91 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQE--YGPVKLEVFDHD  162 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~v~~~--~~~L~i~V~d~~  162 (249)
                      ..+.|+|+|++|++|+..+.. .+||||++++.     ..+++|++++++.||.|||+|.|.+...  ...|.|+|||++
T Consensus        29 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  108 (149)
T 1a25_A           29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD  108 (149)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECC
Confidence            358899999999999998875 89999999996     3578999999999999999999998762  357999999999


Q ss_pred             CCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          163 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       163 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      .+++|++||++.|+|.++..+             ....||+|..
T Consensus       109 ~~~~~~~iG~~~i~l~~l~~~-------------~~~~W~~L~~  139 (149)
T 1a25_A          109 LTSRNDFMGSLSFGISELQKA-------------GVDGWFKLLS  139 (149)
T ss_dssp             SSSCCEEEEEEEEEHHHHTTC-------------CEEEEEECBC
T ss_pred             CCCCCCEEEEEEEEHHHhCcC-------------ccCCeEEccC
Confidence            999999999999999998432             3678988544

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.84  E-value=1.3e-20  Score=143.76  Aligned_cols=110  Identities=27%  Similarity=0.436  Sum_probs=94.5

Q ss_pred             cccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEE---CCeEEeeeeecCcCCceeeeeEEEEeeC---CCccEEE
Q 025708           84 KDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKL  156 (249)
Q Consensus        84 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~~~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i  156 (249)
                      .++.+....+.|.|+|++|++|+..+.. .+||||++.+   +..+++|++++++.||.|||+|.|.+..   ....|.|
T Consensus        25 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i  104 (143)
T 3f04_A           25 YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVM  104 (143)
T ss_dssp             EEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEE
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEE
Confidence            3456666789999999999999998875 8999999999   4567999999999999999999999864   3478999


Q ss_pred             EEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecC
Q 025708          157 EVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD  205 (249)
Q Consensus       157 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~  205 (249)
                      +|||++.+++|++||++.++|.++..            +.....|++|.
T Consensus       105 ~V~d~d~~~~~~~iG~~~i~l~~l~~------------~~~~~~W~~L~  141 (143)
T 3f04_A          105 AVYDFDRFSKHDIIGEFKVPMNTVDF------------GHVTEEWRDLQ  141 (143)
T ss_dssp             EEEECCSSSCCEEEEEEEEEGGGCCT------------TSCEEEEEECB
T ss_pred             EEEeCCCCCCCceEEEEEEEHHHccC------------CCCcceEEECc
Confidence            99999999999999999999999833            34567898854

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.84  E-value=4.5e-21  Score=148.50  Aligned_cols=109  Identities=13%  Similarity=0.166  Sum_probs=92.8

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC------eEEeeeeecCcCCceeeeeEEEEeeC---CCccE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPV  154 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~------~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L  154 (249)
                      ++.|....+.|+|.|++|++|++++.. .+||||++++..      .+++|+++++|+||+|||+|.|.+..   ....|
T Consensus        35 sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L  114 (155)
T 2z0u_A           35 ALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTL  114 (155)
T ss_dssp             EEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEE
T ss_pred             EEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEE
Confidence            355666779999999999999999875 899999999954      26899999999999999999999865   24689


Q ss_pred             EEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      .|+|||++.++++++||++.++|.++..           .+.....||++
T Consensus       115 ~~~V~d~d~~~~~d~iG~~~i~l~~l~~-----------~~~~~~~W~~L  153 (155)
T 2z0u_A          115 RVDVCTTDRSHLEECLGGAQISLAEVCR-----------SGERSTRWYNL  153 (155)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECTTSCT-----------TCCCEEEEEEE
T ss_pred             EEEEEECCCCCCCcEEEEEEEEHHHccC-----------CCCccccceEc
Confidence            9999999999999999999999999831           12356789874

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.83  E-value=1.4e-20  Score=145.20  Aligned_cols=122  Identities=25%  Similarity=0.328  Sum_probs=92.3

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEE--CCe---EEeeeeecCcCCceeeeeEEEEeeCC---CccEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQ---TVQTTIVKSNLNPVWNEELMLSVPQE---YGPVK  155 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~~---~~kT~~~~~t~~P~W~e~f~f~v~~~---~~~L~  155 (249)
                      ++.+....+.|.|+|++|++|+..+.. .+||||++++  +..   +++|+++++++||+|||+|.|.+...   ...|.
T Consensus        22 ~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~  101 (153)
T 1w15_A           22 SLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVE  101 (153)
T ss_dssp             EEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEE
T ss_pred             EEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEE
Confidence            355666789999999999999998865 8899999999  333   57999999999999999999998763   36799


Q ss_pred             EEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          156 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      |+|||++.++++++||++.|+|.+...+..++.......+..+..|.+|.+
T Consensus       102 v~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~p~~~~~~Wh~L~~  152 (153)
T 1w15_A          102 FLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD  152 (153)
T ss_dssp             EEEEECCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             EEEEeCCCCCCCcEEEEEEECCCCCchHHHHHHHHHhCCCCeeeecccccc
Confidence            999999999999999999999988433322221111234667788877543

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=4.3e-20  Score=140.58  Aligned_cols=109  Identities=29%  Similarity=0.446  Sum_probs=92.5

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC---CeEEeeeeecCcCCceeeeeEEEEeeC----CCccEEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKL  156 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i  156 (249)
                      ++.|....+.|+|+|++|++|+..+.. .+||||++++.   ...++|++++++.||+|||+|.|.+..    ....|.|
T Consensus        18 ~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i   97 (141)
T 2d8k_A           18 SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYL   97 (141)
T ss_dssp             EEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEE
T ss_pred             EEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEE
Confidence            355666789999999999999998875 89999999993   457899999999999999999998532    3578999


Q ss_pred             EEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecC
Q 025708          157 EVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD  205 (249)
Q Consensus       157 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~  205 (249)
                      +|||++.++++++||++.++|.++..+            .....||+|.
T Consensus        98 ~V~d~d~~~~~~~iG~~~i~l~~l~~~------------~~~~~W~~L~  134 (141)
T 2d8k_A           98 QVLDYDRFSRNDPIGEVSIPLNKVDLT------------QMQTFWKDLK  134 (141)
T ss_dssp             EEEECCSSSSCEEEEEEEEETTTSCTT------------SCEEEEECCE
T ss_pred             EEEECCCCCCCcEEEEEEEEhhhhcCC------------CCccEEEECc
Confidence            999999999999999999999998432            3467898753

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.83  E-value=1.6e-20  Score=146.96  Aligned_cols=122  Identities=24%  Similarity=0.340  Sum_probs=98.2

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVK  155 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~  155 (249)
                      ++.+....+.|.|+|++|++|+..+.. .+||||++++..     ..++|+++++++||+|||+|.|.+..   ....|.
T Consensus        29 ~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~  108 (166)
T 2cm5_A           29 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLD  108 (166)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEE
T ss_pred             EEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEE
Confidence            355666789999999999999998876 899999999964     57899999999999999999999865   245899


Q ss_pred             EEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          156 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      |+|||++.++++++||.+.|+|.++..+..++-......+..+..|++|..
T Consensus       109 i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~  159 (166)
T 2cm5_A          109 ISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN  159 (166)
T ss_dssp             EEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC
T ss_pred             EEEEECCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCC
Confidence            999999999999999999999998754433221111234566778887544

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.83  E-value=3.2e-20  Score=138.99  Aligned_cols=106  Identities=21%  Similarity=0.385  Sum_probs=85.8

Q ss_pred             cccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEE-----CCeEEeeeeecCcCCceeeeeEEEEeeC----CCccEE
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVK  155 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~  155 (249)
                      +.+....+.|.|+|++|++|+..+.. .+||||++++     +..+++|++++++.||.|||+|.|.+..    ....|.
T Consensus        11 l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~   90 (129)
T 2bwq_A           11 LWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLE   90 (129)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEE
T ss_pred             EEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEE
Confidence            45666679999999999999998876 7899999999     3567999999999999999999999532    346899


Q ss_pred             EEEEecCCCCC--CCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708          156 LEVFDHDTFSA--DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  204 (249)
Q Consensus       156 i~V~d~~~~~~--d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~  204 (249)
                      |+|||++.+++  +++||++.++|.++...             ....||+|
T Consensus        91 ~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~-------------~~~~W~~L  128 (129)
T 2bwq_A           91 ITLWDQARVREEESEFLGEILIELETALLD-------------DEPHWYKL  128 (129)
T ss_dssp             EEEEEC-------CEEEEEEEEEGGGCCCS-------------SCEEEEEC
T ss_pred             EEEEECCcCcCcCCceeEEEEEEccccCCC-------------cCCccEEC
Confidence            99999999887  99999999999998432             16789874

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.82  E-value=2.3e-20  Score=143.27  Aligned_cols=111  Identities=25%  Similarity=0.402  Sum_probs=93.9

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCC-CC-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEEeeCC---CccE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRD-MM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQE---YGPV  154 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~-~~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~v~~~---~~~L  154 (249)
                      ++.+....+.|.|+|++|++|+..+ .. .+||||++.+.     ..+++|+++++++||+|||+|.|.+...   ...|
T Consensus        15 sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L   94 (148)
T 3fdw_A           15 SLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTL   94 (148)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEE
T ss_pred             EEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEE
Confidence            3556667899999999999999887 33 89999999995     2478999999999999999999998763   3469


Q ss_pred             EEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                      .|+|||++.+++|++||++.++|.++..+.            ....||+|...
T Consensus        95 ~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~------------~~~~W~~L~~~  135 (148)
T 3fdw_A           95 QFSVWHHGRFGRNTFLGEAEIQMDSWKLDK------------KLDHCLPLHGK  135 (148)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEEHHHHHHHC------------CSEEEEECBCC
T ss_pred             EEEEEECCCCcCCcEEEEEEEEcccccccC------------CccceEECcCc
Confidence            999999999999999999999999995442            35689997654

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.82  E-value=6.6e-20  Score=144.21  Aligned_cols=105  Identities=22%  Similarity=0.327  Sum_probs=91.7

Q ss_pred             eeeEEEEEEEEeecCCCCCC--CCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEE-ecC
Q 025708           91 FIGLLKVKVVKGINLAIRDM--MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF-DHD  162 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~-d~~  162 (249)
                      ..+.|.|+|++|++|+.++.  +.+||||++++..     .+++|+++++++||+|||+|.|.+......|.|+|| |++
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d  107 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG  107 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence            57999999999999999884  4899999999853     368999999999999999999999776788999999 999


Q ss_pred             CCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          163 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       163 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                      .+++|++||++.|+|.++..            +.....||+|...
T Consensus       108 ~~~~d~~iG~~~i~l~~l~~------------~~~~~~W~~L~~~  140 (171)
T 2q3x_A          108 RMDHKCFMGVAQILLEELDL------------SSMVIGWYKLFPP  140 (171)
T ss_dssp             TTCSSEEEEEEEECGGGSCT------------TSCEEEEEECBCG
T ss_pred             CCCCCCEEEEEEEEHHHccc------------CCCcceeEECCCc
Confidence            99999999999999999842            2357899998665

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.81  E-value=1.3e-19  Score=138.06  Aligned_cols=98  Identities=26%  Similarity=0.455  Sum_probs=85.9

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEE-eeCC---CccE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLS-VPQE---YGPV  154 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~-v~~~---~~~L  154 (249)
                      ++.|....+.|.|+|++|++|+..+.. .+||||++++..     ..++|++++++.||.|||+|.|. +...   ...|
T Consensus        21 ~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l  100 (142)
T 2chd_A           21 SLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTL  100 (142)
T ss_dssp             EEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEE
T ss_pred             EEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEE
Confidence            355666789999999999999999875 899999999964     67899999999999999999998 5432   3689


Q ss_pred             EEEEEecCCCCCCCeeEEEEEechhhhh
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDIQPLLT  182 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~  182 (249)
                      .|+|||++.+++|++||++.++|.++..
T Consensus       101 ~i~V~d~d~~~~d~~iG~~~i~l~~l~~  128 (142)
T 2chd_A          101 RISVCDEDKFGHNEFIGETRFSLKKLKA  128 (142)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEGGGCCT
T ss_pred             EEEEEECCCCCCCcEEEEEEEEHHHcCC
Confidence            9999999999999999999999999843

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.81  E-value=2.3e-19  Score=136.16  Aligned_cols=106  Identities=20%  Similarity=0.299  Sum_probs=87.4

Q ss_pred             cccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC---C-eEEeeeeecCcCCceeeeeEEEEeeCC---CccEEEE
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---Q-QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLE  157 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~-~~~kT~~~~~t~~P~W~e~f~f~v~~~---~~~L~i~  157 (249)
                      +.|....+.|+|+|++|++   ++.. .+||||++.+.   . ..++|+++++++||+|||+|.|.+...   ...|.|+
T Consensus        19 l~y~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~   95 (138)
T 1wfm_A           19 LDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLT   95 (138)
T ss_dssp             EEEETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEE
T ss_pred             EEEeCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEE
Confidence            4566667999999999993   4444 89999999993   2 358999999999999999999998752   4679999


Q ss_pred             EEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          158 VFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       158 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      |||++.+++|++||++.++|.++..            +.....|+++..
T Consensus        96 V~d~d~~~~dd~lG~~~i~l~~l~~------------~~~~~~W~~L~~  132 (138)
T 1wfm_A           96 LRTCDRFSRHSVAGELRLGLDGTSV------------PLGAAQWGELKT  132 (138)
T ss_dssp             EEECCSSCTTSCSEEEEEESSSSSS------------CTTCCEEEECCC
T ss_pred             EEECCCCCCCcEEEEEEEEcccccC------------cccccceeeCcC
Confidence            9999999999999999999999832            224578988654

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.81  E-value=2.8e-20  Score=141.70  Aligned_cols=103  Identities=28%  Similarity=0.497  Sum_probs=88.3

Q ss_pred             eeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCe--------------EEeeeeecCcCCceeeeeEEEE-eeC---CCc
Q 025708           92 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ--------------TVQTTIVKSNLNPVWNEELMLS-VPQ---EYG  152 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~--------------~~kT~~~~~t~~P~W~e~f~f~-v~~---~~~  152 (249)
                      .+.|.|+|++|++|+.++.. .+||||++++...              +++|+++++++||.|||+|.|. +..   ...
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            68999999999999999875 8999999999652              4789999999999999999997 543   357


Q ss_pred             cEEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          153 PVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       153 ~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      .|.|+|||++.++++++||++.|+|.++...            .....||+|..
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~------------~~~~~W~~L~~  138 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL------------DNTPRWYPLKE  138 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGG------------TTCCEEEECBC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccC------------CCCCeEEECCc
Confidence            8999999999999999999999999988543            23568998654

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.81  E-value=1.1e-19  Score=138.14  Aligned_cols=109  Identities=20%  Similarity=0.383  Sum_probs=91.4

Q ss_pred             cccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEE-----CCeEEeeeeecCcCCceeeeeEEEEe-eC---CCccEE
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSV-PQ---EYGPVK  155 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~kT~~~~~t~~P~W~e~f~f~v-~~---~~~~L~  155 (249)
                      +.|....+.|.|+|++|++|+..+.. .+||||++++     +..+++|+++++++||+|||+|.|.+ ..   ....|.
T Consensus        14 l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~   93 (141)
T 1v27_A           14 LWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLE   93 (141)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEE
T ss_pred             EEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEE
Confidence            45555679999999999999998876 8999999999     34678999999999999999999995 32   347899


Q ss_pred             EEEEecCCCCC--CCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          156 LEVFDHDTFSA--DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       156 i~V~d~~~~~~--d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                      |+|||++.+++  +++||++.|+|.++...             ....||+|...
T Consensus        94 i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~-------------~~~~W~~L~~~  134 (141)
T 1v27_A           94 ITLWDQARVREEESEFLGEILIELETALLD-------------DEPHWYKLQTH  134 (141)
T ss_dssp             EEEEEBCSSSSCCBCCCEEEEEEGGGCCCS-------------SEEEEEECBCC
T ss_pred             EEEEECCCCcCCCCceEEEEEEEccccCCC-------------CCCceEECccc
Confidence            99999999887  89999999999998421             16789986553

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.80  E-value=2.6e-19  Score=135.76  Aligned_cols=98  Identities=23%  Similarity=0.422  Sum_probs=85.7

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCC--CCCCcEEEEEEC---CeEEeeeeecCcCCceeeeeEEEE-eeC---CCccEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDM--MSSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVK  155 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~---~~~~kT~~~~~t~~P~W~e~f~f~-v~~---~~~~L~  155 (249)
                      ++.+....+.|.|+|++|++|+.++.  +.+||||++++.   ...++|+++++++||+|||+|.|. +..   ....|.
T Consensus        14 ~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~   93 (138)
T 1ugk_A           14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALH   93 (138)
T ss_dssp             EEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEE
T ss_pred             EEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEE
Confidence            35566678999999999999999886  379999999995   367999999999999999999996 654   235899


Q ss_pred             EEEEecCCCCCCCeeEEEEEechhhhh
Q 025708          156 LEVFDHDTFSADDIMGEAEIDIQPLLT  182 (249)
Q Consensus       156 i~V~d~~~~~~d~~iG~~~i~l~~l~~  182 (249)
                      |+|||++.+++|++||++.++|.++..
T Consensus        94 i~V~d~d~~~~~~~lG~~~i~l~~l~~  120 (138)
T 1ugk_A           94 FTILSFDRFSRDDIIGEVLIPLSGIEL  120 (138)
T ss_dssp             EEEEEECSSCCCCCCEEEEEECTTCCC
T ss_pred             EEEEECCCCCCCcEEEEEEEehhHccC
Confidence            999999999999999999999999843

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.80  E-value=1.5e-18  Score=158.37  Aligned_cols=123  Identities=28%  Similarity=0.460  Sum_probs=103.7

Q ss_pred             eeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCC
Q 025708           90 EFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSAD  167 (249)
Q Consensus        90 ~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d  167 (249)
                      ...|.|.|+|++|++|+..+.. .+||||++.++..+++|+++++++||.|||+|.|.+.. ....|.|+|||+|.+++|
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~  463 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPD  463 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSC
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCC
Confidence            3468999999999999998875 89999999999999999999999999999999999876 446799999999999999


Q ss_pred             CeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEe
Q 025708          168 DIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP  246 (249)
Q Consensus       168 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~  246 (249)
                      ++||++.++|.++..+....+        .+..|++                          +.+..+|+|+|+++..-
T Consensus       464 d~lG~~~~~l~~l~~~~~~~~--------~~~~~~~--------------------------l~~~~~G~i~l~~~l~l  508 (510)
T 3jzy_A          464 DFLGRTEIPVAKIRTEQESKG--------PMTRRLL--------------------------LHEVPTGEVWVRFDLQL  508 (510)
T ss_dssp             CEEEEEEEEHHHHHHHHHHHC--------SCCEEEE--------------------------CBSSSSCEEEEEEEEEE
T ss_pred             CceEEEEEEHHHhccccCCCC--------ceeeeec--------------------------CCCCCCceEEEEEEEEE
Confidence            999999999999977653321        3456665                          56667899998887643

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.79  E-value=9e-19  Score=148.20  Aligned_cols=110  Identities=27%  Similarity=0.431  Sum_probs=94.4

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC---eEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLE  157 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~---~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~  157 (249)
                      ++.|....+.|.|+|++|++|+..+.. .+||||++.++.   ..++|+++++++||.|||+|.|.+..   ....|.|+
T Consensus        11 ~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~   90 (284)
T 2r83_A           11 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMA   90 (284)
T ss_dssp             EEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEE
T ss_pred             EEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEE
Confidence            345666789999999999999998876 899999999953   46899999999999999999999865   24689999


Q ss_pred             EEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          158 VFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       158 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      |||++.+++|++||++.++|.++..            +.....|+++..
T Consensus        91 V~d~d~~~~~~~lG~~~i~l~~l~~------------~~~~~~w~~L~~  127 (284)
T 2r83_A           91 VYDFDRFSKHDIIGEFKVPMNTVDF------------GHVTEEWRDLQS  127 (284)
T ss_dssp             EEECCSSSCCCEEEEEEEEGGGCCC------------SSCEEEEEECBC
T ss_pred             EEECCCCCCCceeEEEEEcchhccc------------CCcceeEEEeec
Confidence            9999999999999999999999843            335788998755

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=1.6e-19  Score=138.43  Aligned_cols=97  Identities=23%  Similarity=0.363  Sum_probs=83.6

Q ss_pred             ccccceeeeEEEEEEEEeecCCCC-CC-------CCCCcEEEEEEC---CeEEeeeeecCcCCceeeeeEEEEeeC---C
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIR-DM-------MSSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ---E  150 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~-~~-------~~~dpyv~v~l~---~~~~kT~~~~~t~~P~W~e~f~f~v~~---~  150 (249)
                      ++.|....+.|.|+|++|++|+.. +.       +.+||||++++.   ..+++|++++++.||+|||+|.|.+..   .
T Consensus        18 ~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~   97 (147)
T 2enp_A           18 STQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQ   97 (147)
T ss_dssp             EEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHH
T ss_pred             EEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhc
Confidence            355666789999999999999984 21       278999999995   356899999999999999999999865   2


Q ss_pred             CccEEEEEEecCCCCCCCeeEEEEEechhhh
Q 025708          151 YGPVKLEVFDHDTFSADDIMGEAEIDIQPLL  181 (249)
Q Consensus       151 ~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~  181 (249)
                      ...|.|+|||++.++++++||++.|+|.++.
T Consensus        98 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~  128 (147)
T 2enp_A           98 RRTLLLTVVDFDKFSRHCVIGKVSVPLCEVD  128 (147)
T ss_dssp             HSEEEEEEECCSTTCCSCCCEEEEEETTTSC
T ss_pred             cCEEEEEEEECCCCcCCcEEEEEEEechhcC
Confidence            3589999999999999999999999999984

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=1.8e-19  Score=137.20  Aligned_cols=109  Identities=21%  Similarity=0.270  Sum_probs=89.6

Q ss_pred             cccceeeeEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEE
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLE  157 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~  157 (249)
                      +.+....+.|.|+|++|++|+.++...+||||++++..     .+++|+++++++||+|||+|.|.+..   ....|.|+
T Consensus        17 l~y~~~~~~L~v~v~~a~~L~~~d~~g~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~   96 (142)
T 2dmg_A           17 IRHSSQRNKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVA   96 (142)
T ss_dssp             EEEETTTTEEEEEEEEEECCCCSSTTCCCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEE
T ss_pred             EEEeCCCCEEEEEEEEeECCCCCCCCCCCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEE
Confidence            45556679999999999999988754499999999932     56899999999999999999999864   23589999


Q ss_pred             EEecCCCCC--CCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          158 VFDHDTFSA--DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       158 V~d~~~~~~--d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      |||++.++.  +++||++.|+|..+..+            .....||++..
T Consensus        97 V~d~d~~~~~~~~~iG~~~i~l~~~~~~------------~~~~~W~~L~~  135 (142)
T 2dmg_A           97 VKNSGGFLSKDKGLLGKVLVALASEELA------------KGWTQWYDLTE  135 (142)
T ss_dssp             EEECCCSSCCSCCCCEEEEEECCCSTTT------------TCBCCBCCCBC
T ss_pred             EEECCCccccCCcEEEEEEEeccccccc------------ccccceeeccC
Confidence            999998764  57999999999988432            24678988655

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.76  E-value=1.6e-17  Score=130.00  Aligned_cols=88  Identities=23%  Similarity=0.367  Sum_probs=74.8

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeec-CcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCe
Q 025708           91 FIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDI  169 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~-~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~  169 (249)
                      ..+.|+|+|++|++|+  ..+.+||||++.  .+..+|++++ ++.||.|||+|.|.+......|.|+|||++ +++|++
T Consensus        12 ~~~~L~V~V~~A~~l~--~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~   86 (167)
T 2cjs_A           12 ILSLLCVGVKKAKFDG--AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM   86 (167)
T ss_dssp             CCCEEEEEEEEEECSS--CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEE
T ss_pred             ceEEEEEEEEEEECCC--CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCce
Confidence            4689999999999885  234789999999  3345676665 699999999999999876678999999999 889999


Q ss_pred             eEEEEEechhhhhh
Q 025708          170 MGEAEIDIQPLLTS  183 (249)
Q Consensus       170 iG~~~i~l~~l~~~  183 (249)
                      ||++.|+|.++...
T Consensus        87 iG~~~i~L~~l~~~  100 (167)
T 2cjs_A           87 VGTVWIPLRTIRQS  100 (167)
T ss_dssp             EEEEEEEGGGSCBC
T ss_pred             EEEEEEEHHHhccc
Confidence            99999999998643

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.76  E-value=7.6e-18  Score=126.66  Aligned_cols=87  Identities=23%  Similarity=0.363  Sum_probs=73.4

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeec-CcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCee
Q 025708           92 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM  170 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~-~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~i  170 (249)
                      .+.|+|+|++|++|+.  .+.+||||++.  .+..+|++++ ++.||.|||+|.|.+......|.|+|||++ +++|++|
T Consensus         4 ~~~L~V~V~~A~~l~~--~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~i   78 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGA--QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMV   78 (131)
T ss_dssp             CEEEEEEEEEEECSSC--GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEE
T ss_pred             ceEEEEEEEEeECCCC--CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeE
Confidence            4899999999998853  34789999999  3344565554 799999999999999876678999999999 8899999


Q ss_pred             EEEEEechhhhhh
Q 025708          171 GEAEIDIQPLLTS  183 (249)
Q Consensus       171 G~~~i~l~~l~~~  183 (249)
                      |++.|+|.++...
T Consensus        79 G~~~i~l~~l~~~   91 (131)
T 2cjt_A           79 GTVWIPLRTIRQS   91 (131)
T ss_dssp             EEEEEEGGGSCBC
T ss_pred             EEEEEEHHHhhhc
Confidence            9999999998543

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.76  E-value=5.1e-18  Score=144.64  Aligned_cols=96  Identities=30%  Similarity=0.546  Sum_probs=83.7

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEE---CCeEEeeeeecCcCCceeeeeEEEEeeCC---CccEEEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLE  157 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~~~~~kT~~~~~t~~P~W~e~f~f~v~~~---~~~L~i~  157 (249)
                      ++.|....+.|.|+|++|++|+.++.. .+||||++++   +.+.++|+++++++||.|||+|.|.+...   ...|.|+
T Consensus        12 ~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~   91 (296)
T 1dqv_A           12 ALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFS   91 (296)
T ss_dssp             EEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEE
T ss_pred             EEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEE
Confidence            355666789999999999999998876 8999999999   45678999999999999999999998652   4589999


Q ss_pred             EEecCCCCCCCeeEEEEEe-chhh
Q 025708          158 VFDHDTFSADDIMGEAEID-IQPL  180 (249)
Q Consensus       158 V~d~~~~~~d~~iG~~~i~-l~~l  180 (249)
                      |||++.+++|++||++.++ +.++
T Consensus        92 V~d~d~~~~~~~iG~~~i~~l~~~  115 (296)
T 1dqv_A           92 VYDFDRFSRHDLIGQVVLDNLLEL  115 (296)
T ss_dssp             EEECCSSSCCCEEEEEECCCTTGG
T ss_pred             EEEcCCCCCCceEEEEEecccccc
Confidence            9999999999999999996 4444

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=5.5e-18  Score=143.38  Aligned_cols=119  Identities=29%  Similarity=0.363  Sum_probs=95.7

Q ss_pred             cceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC--C---eEEeeeeecCcCCceeeeeEEEEeeCC---CccEEEEE
Q 025708           88 MVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEV  158 (249)
Q Consensus        88 ~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~---~~~kT~~~~~t~~P~W~e~f~f~v~~~---~~~L~i~V  158 (249)
                      +....+.|.|.|++|++|+..+.. .+||||++++.  +   .+++|+++++++||.|||+|.|.+...   ...|.|+|
T Consensus       145 ~~p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V  224 (284)
T 2r83_A          145 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV  224 (284)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEE
T ss_pred             ecCcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEE
Confidence            334467899999999999998876 89999999984  2   457999999999999999999998763   34699999


Q ss_pred             EecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          159 FDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       159 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      ||++.++++++||++.+++..+..+..++.......+..+..|++|..
T Consensus       225 ~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~  272 (284)
T 2r83_A          225 LDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  272 (284)
T ss_dssp             EECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred             EeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence            999999999999999999988755444432222244567889998654

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.74  E-value=3.8e-17  Score=149.08  Aligned_cols=93  Identities=24%  Similarity=0.342  Sum_probs=83.2

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEEEec
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDH  161 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V~d~  161 (249)
                      .++.....+.|+|+|++|++|+. |.. .+||||+|.++.++++|+++++++||+|||+|.|.+..  ....|.|+|||+
T Consensus       386 ~C~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~  464 (540)
T 3nsj_A          386 CCPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDA  464 (540)
T ss_dssp             GCBSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEEC
T ss_pred             cccccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEEC
Confidence            34455557999999999999998 765 89999999999989999999999999999999998643  567899999999


Q ss_pred             CCCCCCCeeEEEEEech
Q 025708          162 DTFSADDIMGEAEIDIQ  178 (249)
Q Consensus       162 ~~~~~d~~iG~~~i~l~  178 (249)
                      |.+++||+||.+.++|.
T Consensus       465 D~~~~dD~LG~~~~~L~  481 (540)
T 3nsj_A          465 DYGWDDDLLGSCDRSPH  481 (540)
T ss_dssp             CSSSCCEEEEEEEECCC
T ss_pred             CCCCCCCEEEEEEEEee
Confidence            99999999999999987

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.73  E-value=1.7e-16  Score=118.87  Aligned_cols=89  Identities=11%  Similarity=0.177  Sum_probs=81.1

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeec-CcCCceeeeeEEEEeeC---CCccEEEEEEecCCCCCC
Q 025708           92 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSAD  167 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~-~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~~~d  167 (249)
                      -..|+|.|.+|.+|+.    .+|||+++.+.+.+++|++++ ++.||+|||.|+|++..   ....|.|.|+|+++++++
T Consensus        20 ~msL~V~l~~a~~Lpg----~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~n   95 (144)
T 3l9b_A           20 HMALIVHLKTVSELRG----RADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSN   95 (144)
T ss_dssp             CEEEEEEEEEEESCCS----CEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCC
T ss_pred             cEEEEEEEEEecCCCC----CCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCC
Confidence            3568999999999984    569999999999999999998 69999999999999876   457899999999999999


Q ss_pred             CeeEEEEEechhhhhhh
Q 025708          168 DIMGEAEIDIQPLLTSA  184 (249)
Q Consensus       168 ~~iG~~~i~l~~l~~~~  184 (249)
                      .+||++.++|.++..++
T Consensus        96 rlIG~~~i~Lq~lv~~~  112 (144)
T 3l9b_A           96 KLIGTFRMVLQKVVEEN  112 (144)
T ss_dssp             EEEEEEEEESHHHHHHS
T ss_pred             CEEEEEEEEhHHhccCC
Confidence            99999999999997664

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.67  E-value=1.2e-17  Score=142.28  Aligned_cols=121  Identities=25%  Similarity=0.375  Sum_probs=99.3

Q ss_pred             ccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC--C---eEEeeeeecCcCCceeeeeEEEEeeCC---CccEEEE
Q 025708           87 GMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLE  157 (249)
Q Consensus        87 ~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~---~~~kT~~~~~t~~P~W~e~f~f~v~~~---~~~L~i~  157 (249)
                      .+....|.|.|.|++|++|+.++.. .+||||++++.  +   .+++|++++++.||.|||+|.|.+...   ...|.|+
T Consensus       146 ~y~~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~  225 (296)
T 1dqv_A          146 CYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA  225 (296)
T ss_dssp             EEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCE
T ss_pred             EeccccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEE
Confidence            3444568999999999999998875 78999999995  2   468999999999999999999998763   3579999


Q ss_pred             EEecCCCCCCCeeEEEEEechhhhh-hhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          158 VFDHDTFSADDIMGEAEIDIQPLLT-SALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       158 V~d~~~~~~d~~iG~~~i~l~~l~~-~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                      |||++.++++++||.+.|++..+.. +..++..+....+..+..|++|...
T Consensus       226 V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~  276 (296)
T 1dqv_A          226 VVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE  276 (296)
T ss_dssp             EEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred             EEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence            9999999999999999999998765 4444443444467788999987654

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.67  E-value=1.2e-16  Score=150.24  Aligned_cols=105  Identities=19%  Similarity=0.380  Sum_probs=90.4

Q ss_pred             eeeeEEEEEEEEeecCCC---CCCC-CCCcEEEEEEC---CeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEec
Q 025708           90 EFIGLLKVKVVKGINLAI---RDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDH  161 (249)
Q Consensus        90 ~~~g~L~V~v~~a~~L~~---~~~~-~~dpyv~v~l~---~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~  161 (249)
                      ...+.|+|+|++|++|+.   ++.. .+||||+++++   ..+++|+++++++||+|||+|.|.+.. ....|.|+|||+
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            357999999999999998   6653 89999999997   367899999999999999999999987 567899999999


Q ss_pred             CCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          162 DTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       162 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                      |.++ |++||++.|+|.++..            +.....|++|...
T Consensus        95 D~~~-ddfIG~v~I~L~~L~~------------g~~~~~w~~L~~~  127 (749)
T 1cjy_A           95 NYVM-DETLGTATFTVSSMKV------------GEKKEVPFIFNQV  127 (749)
T ss_dssp             CSSS-CEEEEEECCBSTTSCT------------TCCCCEEEEETTT
T ss_pred             CCCC-CceeEEEEEEHHHcCC------------CCceEEEEecCCC
Confidence            9998 9999999999999843            2345689986553

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.65  E-value=8.8e-16  Score=142.74  Aligned_cols=92  Identities=26%  Similarity=0.421  Sum_probs=81.7

Q ss_pred             eeeEEEEEEEEeecCCCCCC---CCCCcEEEEEECC-----eEEeeeeecCc-CCceeeeeEEEEeeCC-CccEEEEEEe
Q 025708           91 FIGLLKVKVVKGINLAIRDM---MSSDPYVVLRLGQ-----QTVQTTIVKSN-LNPVWNEELMLSVPQE-YGPVKLEVFD  160 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~~---~~~dpyv~v~l~~-----~~~kT~~~~~t-~~P~W~e~f~f~v~~~-~~~L~i~V~d  160 (249)
                      ..+.|+|+|++|++|+..+.   +.+||||+|.+.+     .+++|++++++ .||+|||+|.|.+..+ ...|.|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            56899999999999998873   4899999999933     57899999997 9999999999998763 3679999999


Q ss_pred             cCCCCCCCeeEEEEEechhhhh
Q 025708          161 HDTFSADDIMGEAEIDIQPLLT  182 (249)
Q Consensus       161 ~~~~~~d~~iG~~~i~l~~l~~  182 (249)
                      +|.++++++||++.++|..|..
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~  596 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQ  596 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCC
T ss_pred             cCCCCCCceeEEEEEEHHHcCC
Confidence            9999999999999999999843

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.59  E-value=1.5e-16  Score=144.19  Aligned_cols=101  Identities=15%  Similarity=0.229  Sum_probs=14.9

Q ss_pred             eeeeEEEEEEEEeecCCCCCCCCCCcEEEEEECCe-EEeeeeecCc---CCceeeeeEEEEeeCCCccEEEEEEec-C--
Q 025708           90 EFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQ-TVQTTIVKSN---LNPVWNEELMLSVPQEYGPVKLEVFDH-D--  162 (249)
Q Consensus        90 ~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~-~~kT~~~~~t---~~P~W~e~f~f~v~~~~~~L~i~V~d~-~--  162 (249)
                      ...+.|+|+|++|++|++++    ||||++.+++. ..||+++++|   .||.|||+|.|.+......|.|+|||. +  
T Consensus         8 r~~~~L~V~VieAk~L~~~d----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~   83 (483)
T 3bxj_A            8 RVDNVLKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKK   83 (483)
T ss_dssp             EEEECC-------------------------------------------------CCEECC-------------------
T ss_pred             eeccEEEEEEEEcCCcCCCC----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCcc
Confidence            45689999999999999877    99999999875 5799999999   999999999999655457899999994 4  


Q ss_pred             -CCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          163 -TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       163 -~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                       ..++|++||.+.|++..+..+            ...+.||++.+
T Consensus        84 ~~~~~d~~lG~v~i~l~~l~~~------------~~~~~W~~L~~  116 (483)
T 3bxj_A           84 RKKDKAGYVGLVTVPVATLAGR------------HFTEQWYPVTL  116 (483)
T ss_dssp             -----------------------------------CCEECC----
T ss_pred             ccCCCCceEEEEEEEHHHhcCC------------CCCCeEEECCC
Confidence             367899999999999998432            35678998754

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.49  E-value=7.8e-14  Score=131.29  Aligned_cols=103  Identities=32%  Similarity=0.498  Sum_probs=88.8

Q ss_pred             eeEEEEEEEEeecCCCCCCC-CCCcEEEEEE-----CCeEEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEEEecCC
Q 025708           92 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDT  163 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V~d~~~  163 (249)
                      .+.|.|.|++|++|++++.. .+||||++.+     ...+++|+++++++||.|||+|.|.+..  ....|.|+|||++.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            47899999999999999886 8999999999     3456899999999999999999999875  34569999999999


Q ss_pred             CCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          164 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       164 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                      +++|++||.+.++|.++....             .+.|+.+...
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~~-------------~~~w~~Lls~  281 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKAG-------------VDGWFKLLSQ  281 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHCC-------------EEEEEECBCT
T ss_pred             ccccccccccccchhhhccCC-------------cccceeeccc
Confidence            999999999999999986542             4678876543

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.33  E-value=6.6e-11  Score=86.07  Aligned_cols=115  Identities=10%  Similarity=0.217  Sum_probs=84.6

Q ss_pred             eeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeE----Eee-eeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCC
Q 025708           91 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT----VQT-TIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTF  164 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~----~kT-~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~  164 (249)
                      ....|+|.+.++.--+.+... ..||||.+.+....    .+| .+.++|..|.||++|.-.+... +.|.|.|++... 
T Consensus         4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~a~-   81 (126)
T 1yrk_A            4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG-RVIQIVLMRAAE-   81 (126)
T ss_dssp             CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT-CEEEEEEEEETT-
T ss_pred             cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC-EEEEEEEEcCCC-
Confidence            456788888776532222222 67999999996643    254 6777899999999999998764 799999997554 


Q ss_pred             CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708          165 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  244 (249)
Q Consensus       165 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  244 (249)
                         +|++.|.|++++|+...+..       +...                          ++|+.|+.  .|+|++.++|
T Consensus        82 ---~fvAn~tV~~edL~~~c~~~-------~g~~--------------------------e~WvdLeP--~Gkl~~~i~~  123 (126)
T 1yrk_A           82 ---EPVSEVTVGVSVLAERCKKN-------NGKA--------------------------EFWLDLQP--QAKVLMSVQY  123 (126)
T ss_dssp             ---EEEEEEEEEHHHHHHHHHTT-------TTEE--------------------------EEEEECBS--SCEEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhccC-------CCce--------------------------EEEEeccc--CcEEEEEEEE
Confidence               89999999999998653221       1122                          55666654  8999999998


Q ss_pred             E
Q 025708          245 M  245 (249)
Q Consensus       245 ~  245 (249)
                      .
T Consensus       124 ~  124 (126)
T 1yrk_A          124 F  124 (126)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.33  E-value=9.1e-12  Score=118.96  Aligned_cols=85  Identities=21%  Similarity=0.419  Sum_probs=70.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCcEEEEEECC------eEEeeeeecC-cCCceeee-eEEEE-eeC-CCccEEEEEEec
Q 025708           92 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ------QTVQTTIVKS-NLNPVWNE-ELMLS-VPQ-EYGPVKLEVFDH  161 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~------~~~kT~~~~~-t~~P~W~e-~f~f~-v~~-~~~~L~i~V~d~  161 (249)
                      ...|+|+|++|++|+..   .+||||+|.+.+      .+++|+++++ ++||+||| +|.|. |.. ....|+|+|||+
T Consensus       724 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~  800 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE  800 (885)
T ss_dssp             CEEEEEEEEEEESCCSS---CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred             ceEEEEEEEEeccCccc---CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence            45899999999999853   579999999943      3479999976 59999999 69998 644 345799999998


Q ss_pred             CCCCCCCeeEEEEEechhhhhh
Q 025708          162 DTFSADDIMGEAEIDIQPLLTS  183 (249)
Q Consensus       162 ~~~~~d~~iG~~~i~l~~l~~~  183 (249)
                      +    +++||++.++|..|..+
T Consensus       801 d----ddfiG~~~lpL~~L~~G  818 (885)
T 3ohm_B          801 G----GKFVGHRILPVSAIRSG  818 (885)
T ss_dssp             T----TEEEEEEEEETTTCCCE
T ss_pred             C----ccEEeeEEEEHHHcCCC
Confidence            7    79999999999999544

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.33  E-value=1.9e-11  Score=116.02  Aligned_cols=85  Identities=15%  Similarity=0.394  Sum_probs=72.0

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCcEEEEEECC-------eEEeeeeecC-cCCceeeee-EEEE-eeC-CCccEEEEEEe
Q 025708           92 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-------QTVQTTIVKS-NLNPVWNEE-LMLS-VPQ-EYGPVKLEVFD  160 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-------~~~kT~~~~~-t~~P~W~e~-f~f~-v~~-~~~~L~i~V~d  160 (249)
                      .+.|+|+|++|++|+..   .+||||+|.+.+       .+++|+++++ +.||+|||+ |.|. +.. ....|+|+|||
T Consensus       649 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D  725 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK---QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE  725 (816)
T ss_dssp             CEEEEEEEEEEECCCSS---CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC---CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence            47899999999999854   579999999953       5679999886 699999998 9998 654 33579999999


Q ss_pred             cCCCCCCCeeEEEEEechhhhhh
Q 025708          161 HDTFSADDIMGEAEIDIQPLLTS  183 (249)
Q Consensus       161 ~~~~~~d~~iG~~~i~l~~l~~~  183 (249)
                      ++    +++||.+.++|..|..+
T Consensus       726 ~d----ddfiG~~~ipL~~L~~G  744 (816)
T 3qr0_A          726 EN----GKFIGHRVMPLDGIKPG  744 (816)
T ss_dssp             TT----SCEEEEEEEESTTCCCE
T ss_pred             cC----CCeeeEEEEEHHHcCCc
Confidence            85    78999999999999654

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.33  E-value=5.4e-11  Score=87.64  Aligned_cols=119  Identities=14%  Similarity=0.247  Sum_probs=87.1

Q ss_pred             ccceeeeEEEEEEEEeecCCCCC--CCCCCcEEEEEECCeE----Eee-eeecCcCCceeeeeEEEEeeCCCccEEEEEE
Q 025708           87 GMVEFIGLLKVKVVKGINLAIRD--MMSSDPYVVLRLGQQT----VQT-TIVKSNLNPVWNEELMLSVPQEYGPVKLEVF  159 (249)
Q Consensus        87 ~~~~~~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~l~~~~----~kT-~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~  159 (249)
                      +.....+.|+|.+.++.-.+.+.  ....||||.+.+....    .+| .+.++|..|+||++|.-.+... +.|.|.|+
T Consensus         4 ~~~~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G-r~l~i~Vf   82 (138)
T 2enj_A            4 GSSGMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG-RVMQIIVK   82 (138)
T ss_dssp             CCSSCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS-CEEEEEEE
T ss_pred             cccccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC-eEEEEEEE
Confidence            33445677888887776544332  2368999999996542    566 6677899999999999888764 79999999


Q ss_pred             ecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEE
Q 025708          160 DHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELE  239 (249)
Q Consensus       160 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~  239 (249)
                      +...    +|++.+.|++++|+...+..       +...                          ++|+.|+.  .|+|+
T Consensus        83 h~a~----~fVAn~tV~~edL~~~ck~~-------~g~~--------------------------e~WvdLeP--~Gkl~  123 (138)
T 2enj_A           83 GKNV----DLISETTVELYSLAERCRKN-------NGKT--------------------------EIWLELKP--QGRML  123 (138)
T ss_dssp             CSSC----SCCEEEEEESHHHHHHHHHT-------TTCE--------------------------EEEEECBS--SCEEE
T ss_pred             cCCC----CeeeEEEEEHHHHHhhhccC-------CCce--------------------------EEEEeccc--CcEEE
Confidence            6544    89999999999998653221       1122                          55555654  89999


Q ss_pred             EEEEEE
Q 025708          240 LELEWM  245 (249)
Q Consensus       240 l~l~~~  245 (249)
                      +.++|.
T Consensus       124 v~i~~~  129 (138)
T 2enj_A          124 MNARYF  129 (138)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            999874

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.28  E-value=2.9e-11  Score=115.10  Aligned_cols=86  Identities=24%  Similarity=0.445  Sum_probs=70.9

Q ss_pred             eeeEEEEEEEEeecCCCCCCCCCCcEEEEEECC------eEEeee-eecC-cCCceeee-eEEE-EeeC-CCccEEEEEE
Q 025708           91 FIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ------QTVQTT-IVKS-NLNPVWNE-ELML-SVPQ-EYGPVKLEVF  159 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~------~~~kT~-~~~~-t~~P~W~e-~f~f-~v~~-~~~~L~i~V~  159 (249)
                      ..+.|+|.|++|++|+..   .+||||+|.+.+      ++++|+ ++++ +.||+||| +|.| .+.. ....|+|.||
T Consensus       676 ~~~~L~V~Visa~~L~~~---~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~  752 (799)
T 2zkm_X          676 VATTLSITVISGQFLSER---SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM  752 (799)
T ss_dssp             TCEEEEEEEEEEESCCSS---CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred             eeeeEEEEEEeccccCcc---CCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence            357999999999999853   579999999932      357899 7764 69999999 6999 7755 3357999999


Q ss_pred             ecCCCCCCCeeEEEEEechhhhhh
Q 025708          160 DHDTFSADDIMGEAEIDIQPLLTS  183 (249)
Q Consensus       160 d~~~~~~d~~iG~~~i~l~~l~~~  183 (249)
                      |++    +++||.+.++|..|..+
T Consensus       753 D~d----~d~iG~~~ipl~~L~~G  772 (799)
T 2zkm_X          753 EEG----NKFLGHRIIPINALNSG  772 (799)
T ss_dssp             ETT----TEEEEEEEEEGGGBCCE
T ss_pred             EeC----CCccceEeeehhhcCCC
Confidence            986    79999999999999543

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}

Probab=99.12  E-value=1.8e-11  Score=91.05  Aligned_cols=49  Identities=41%  Similarity=0.703  Sum_probs=41.5

Q ss_pred             cccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccCCcccc
Q 025708            3 EVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI   54 (249)
Q Consensus         3 ~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~~~   54 (249)
                      ..+||..||++||+++|+.+.+|+++   ..+|+|||+||++++|+.+..+.
T Consensus        84 ~~~GN~~an~~~e~~lp~~~~~P~~~---~~~e~fIr~KY~~k~f~~~~~~i  132 (134)
T 2iqj_A           84 QEMGNGKANRLYEAYLPETFRRPQID---PAVEGFIRDKYEKKKYMDRSLDI  132 (134)
T ss_dssp             HTCHHHHHHHHHTTTCCSSCCCCCSH---HHHHHHHHHHHTSCTTCCTTC--
T ss_pred             HHHchHHHHHHHHhcCCccCCCCCch---HHHHHHHHHHHhCCeeeCCcccc
Confidence            45699999999999999999998764   46889999999999999876543

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=3.5e-11  Score=90.28  Aligned_cols=49  Identities=33%  Similarity=0.563  Sum_probs=42.0

Q ss_pred             ccccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccCCccc
Q 025708            2 IEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLR   53 (249)
Q Consensus         2 ~~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~~   53 (249)
                      +..+||..||++||+++|+.+.+|+++   ..+|+|||+||+.++|+.+...
T Consensus        85 m~~~GN~~an~~~e~~lp~~~~~P~~~---~~~e~fIr~KY~~k~f~~~~~~  133 (141)
T 2crr_A           85 MQDMGNTKARLLYEANLPENFRRPQTD---QAVEFFIRDKYEKKKYYDKNAI  133 (141)
T ss_dssp             HHHTHHHHHHHHGGGSCCTTCCCCCSH---HHHHHHHHHHHTSCTTCCCGGG
T ss_pred             HHHHccHHHHHHHHhcCCcccCCCCch---HHHHHHHHHHHhcCcccCCCcc
Confidence            345699999999999999999898765   4688999999999999976543

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.00  E-value=1e-10  Score=102.85  Aligned_cols=58  Identities=31%  Similarity=0.521  Sum_probs=50.7

Q ss_pred             ccccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccCCccccCCCCC
Q 025708            2 IEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKP   59 (249)
Q Consensus         2 ~~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~~~~ss~~   59 (249)
                      +..+||..||++||+++|.++.+|+++++...||+|||+||+.++|+.+..+.+++.+
T Consensus        89 ~~~~gN~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~~~~~~~~  146 (386)
T 3lju_X           89 MASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQEPYSAG  146 (386)
T ss_dssp             HHHSSHHHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGGGHHHHSS
T ss_pred             HHHhcchHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCccCcccccc
Confidence            3456999999999999999999999999999999999999999999998875444433

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A

Probab=98.88  E-value=3.4e-10  Score=84.79  Aligned_cols=52  Identities=17%  Similarity=0.366  Sum_probs=41.1

Q ss_pred             ccccCchHHHHHHhhcCCC-CCCCCCCCCCHHHHHHHHHHHhhcccccCCcccc
Q 025708            2 IEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI   54 (249)
Q Consensus         2 ~~~~gn~~~n~~~e~~~p~-~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~~~   54 (249)
                      +..+||..+|++||+++|+ .+.+|++.+ ...+++|||+||+.++|+.+....
T Consensus        80 m~~~GN~~an~~~e~~~~~~~~~~P~~~d-~~~~~~fIr~KYe~k~f~~~~~~~  132 (140)
T 2olm_A           80 LQKHGNEVCKQIWLGLFDDRSSAIPDFRD-PQKVKEFLQEKYEKKRWYVPPEQA  132 (140)
T ss_dssp             HHHCHHHHHHHHHTTTCCTTTSCCCCTTC-HHHHHHHHHHHHTSCTTCCCHHHH
T ss_pred             HHHhccHHHHHHHHhhCCcccCCCCCCCC-HHHHHHHHHHHHcCCeeeCCcccc
Confidence            3457999999999999986 456776544 456788999999999999876543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=98.76  E-value=4e-09  Score=92.23  Aligned_cols=51  Identities=35%  Similarity=0.518  Sum_probs=45.3

Q ss_pred             ccccCchHHHHHHhhcCCC-CCCCCCCCCCHHHHHHHHHHHhhcccccCCcc
Q 025708            2 IEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFLKPSL   52 (249)
Q Consensus         2 ~~~~gn~~~n~~~e~~~p~-~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~   52 (249)
                      +..+||..+|++||+++|. +..||.|++++++||+|||+||++++|+.+..
T Consensus       101 ~~~~gn~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~  152 (368)
T 3jue_A          101 MCELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLP  152 (368)
T ss_dssp             HHHSCHHHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC
T ss_pred             HHHHccHHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccch
Confidence            3456999999999999997 56899999999999999999999999997643

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=98.02  E-value=3.3e-06  Score=70.60  Aligned_cols=49  Identities=29%  Similarity=0.458  Sum_probs=43.3

Q ss_pred             cccCchHHHHHHhhcCCCCC-CCCCCCCCHHHHHHHHHHHhhcccccCCc
Q 025708            3 EVGGNSSANAIYEAFIPEGV-SKPGPDSSHEIRSKFIRSKYELQEFLKPS   51 (249)
Q Consensus         3 ~~~gn~~~n~~~e~~~p~~~-~kp~~~~~~~~~e~~ir~ky~~~~f~~~~   51 (249)
                      ..+||..+|++||+.+|... .||++.+++..+++||++||..++|..+.
T Consensus        74 ~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~  123 (278)
T 1dcq_A           74 KNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK  123 (278)
T ss_dssp             HHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred             HHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccccc
Confidence            34699999999999999755 49999999999999999999999988653

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=97.97  E-value=5e-06  Score=70.35  Aligned_cols=48  Identities=31%  Similarity=0.438  Sum_probs=43.4

Q ss_pred             cccCchHHHHHHhhcCCCC-CCCCCCCCCHHHHHHHHHHHhhcccccCC
Q 025708            3 EVGGNSSANAIYEAFIPEG-VSKPGPDSSHEIRSKFIRSKYELQEFLKP   50 (249)
Q Consensus         3 ~~~gn~~~n~~~e~~~p~~-~~kp~~~~~~~~~e~~ir~ky~~~~f~~~   50 (249)
                      ..+||..+|++||+.+|.. +.+|.+.++...|++||++||..+.|..+
T Consensus        99 ~~~GN~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~  147 (301)
T 2b0o_E           99 LNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR  147 (301)
T ss_dssp             HHCCHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred             HHcCCHHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence            3469999999999999985 78999999999999999999999998764

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=97.95  E-value=9.1e-06  Score=73.50  Aligned_cols=50  Identities=32%  Similarity=0.469  Sum_probs=44.3

Q ss_pred             ccccCchHHHHHHhhcCCC-CCCCCCCCCCHHHHHHHHHHHhhcccccCCc
Q 025708            2 IEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFLKPS   51 (249)
Q Consensus         2 ~~~~gn~~~n~~~e~~~p~-~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~   51 (249)
                      +..+||..+|++||+.+|. ...+|.+.+....|++||++||+.+.|..+.
T Consensus        79 ~~~~GN~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~  129 (497)
T 3lvq_E           79 ALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC  129 (497)
T ss_dssp             TTTCCHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred             HHHHhhHHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence            4566999999999999996 4589999999999999999999999997643

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=94.82  E-value=0.67  Score=36.88  Aligned_cols=54  Identities=13%  Similarity=0.281  Sum_probs=41.7

Q ss_pred             EEeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCC----CCCCeeEEEEEech
Q 025708          125 TVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF----SADDIMGEAEIDIQ  178 (249)
Q Consensus       125 ~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~----~~d~~iG~~~i~l~  178 (249)
                      .++|-+...+.+|.|+|++.+.++.   ....|.|++++...-    ..+..+|-+.+||-
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            4678888889999999999999987   456799999875431    12347888888875

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}

Probab=94.68  E-value=0.007  Score=44.84  Aligned_cols=40  Identities=18%  Similarity=0.303  Sum_probs=28.6

Q ss_pred             cccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhccc
Q 025708            3 EVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQE   46 (249)
Q Consensus         3 ~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~   46 (249)
                      +.+||..+|++||++.+..   | ..+.++.-+.|+.++|..+.
T Consensus        93 ~~~GN~~an~~~e~~~~~~---~-~~~~~~kY~s~~a~~Y~~kL  132 (138)
T 2owa_A           93 DIGGNGRARNYFKQVLGVN---F-SPKTKEYASSICGRQYKQIL  132 (138)
T ss_dssp             HHCCHHHHHHHHHHHTCTT---C-CGGGCHHHHSHHHHHHHHHH
T ss_pred             HhhccHHHHHHHHHHcCCC---C-CCCHHHHHhhHHHHHHHHHH
Confidence            4579999999999965432   2 12334566789999998764

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.66  E-value=0.0046  Score=46.39  Aligned_cols=18  Identities=33%  Similarity=0.530  Sum_probs=15.8

Q ss_pred             cccCchHHHHHHhhcCCC
Q 025708            3 EVGGNSSANAIYEAFIPE   20 (249)
Q Consensus         3 ~~~gn~~~n~~~e~~~p~   20 (249)
                      +.+||..||++||++.+.
T Consensus        87 ~~~GN~~an~~~e~~~~~  104 (149)
T 2crw_A           87 QVGGNASASSFFHQHGCS  104 (149)
T ss_dssp             HTTCHHHHHHHHHHHCCC
T ss_pred             HHHhhHHHHHHHHhcCCC
Confidence            457999999999999965

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=94.31  E-value=0.38  Score=46.55  Aligned_cols=90  Identities=14%  Similarity=0.233  Sum_probs=62.8

Q ss_pred             ceeeeEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCeE----EeeeeecCcCCceeeeeEEEEeeC----CCccEEEEE
Q 025708           89 VEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEV  158 (249)
Q Consensus        89 ~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~----~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V  158 (249)
                      -.....+.|.|..+.++...+  ..+-||.+.+  |++.    ..|..+.-..+|.|||.+.|++.-    ....|.|+|
T Consensus       213 ~~~~~~f~i~i~~~~~~~~~~--~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti  290 (940)
T 2wxf_A          213 WSLEQPFSIELIEGRKVNADE--RMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFAL  290 (940)
T ss_dssp             TTCCSEEEEEEEEEECCCC-----CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEE
T ss_pred             hhcCCceEEEEEEecccCCCC--CceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEE
Confidence            345678999999999987543  3467888776  5432    455555557789999999998754    356799999


Q ss_pred             EecCCC--C----------CCCeeEEEEEechhh
Q 025708          159 FDHDTF--S----------ADDIMGEAEIDIQPL  180 (249)
Q Consensus       159 ~d~~~~--~----------~d~~iG~~~i~l~~l  180 (249)
                      |+...-  +          .+..||.+.++|-+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          291 YAVVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EEEC----------------CEEEEEEEEESBCT
T ss_pred             EEecCCccCccccccccccccceEEEEeeeEECC
Confidence            995321  1          235899999998764

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=92.69  E-value=0.65  Score=45.52  Aligned_cols=90  Identities=18%  Similarity=0.182  Sum_probs=61.7

Q ss_pred             eeeeEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCe----EEeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEE
Q 025708           90 EFIGLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQ----TVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVF  159 (249)
Q Consensus        90 ~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~----~~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~  159 (249)
                      .....+.|+|..+.++........+-||.+.+  |.+    ...|..+. ..+|.|||.+.|++.-    ....|.|+||
T Consensus       352 ~~~~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~  430 (1091)
T 3hhm_A          352 VINSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSIC  430 (1091)
T ss_dssp             GCCSEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEEC
T ss_pred             hCCCCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEE
Confidence            34578999999999886443224577888887  432    24444333 4578899999999754    3567999999


Q ss_pred             ecCCC----CCCCeeEEEEEechhh
Q 025708          160 DHDTF----SADDIMGEAEIDIQPL  180 (249)
Q Consensus       160 d~~~~----~~d~~iG~~~i~l~~l  180 (249)
                      +....    ..+..||.+.++|-+.
T Consensus       431 ~~~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          431 SVKGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             CCCCCC-------CCEEEEEESBCT
T ss_pred             EecCccCcccccceeEEeeeeeEcc
Confidence            86542    1235799999999765

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=89.59  E-value=3.3  Score=31.02  Aligned_cols=92  Identities=14%  Similarity=0.170  Sum_probs=61.7

Q ss_pred             eeeeEEEEEEEEeecCCCCC--CCCCCcE--EEEEE-CCeEEeeeeecCcCCceeeeeEEEEeeCC--------CccEEE
Q 025708           90 EFIGLLKVKVVKGINLAIRD--MMSSDPY--VVLRL-GQQTVQTTIVKSNLNPVWNEELMLSVPQE--------YGPVKL  156 (249)
Q Consensus        90 ~~~g~L~V~v~~a~~L~~~~--~~~~dpy--v~v~l-~~~~~kT~~~~~t~~P~W~e~f~f~v~~~--------~~~L~i  156 (249)
                      .-.+.+.|+|.++.--+..-  .+..+|+  |.+.+ +-+.+.|.++. ..+|.+|-+-+|.|...        ...|.+
T Consensus        15 ~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~l   93 (156)
T 2yrb_A           15 RGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITL   93 (156)
T ss_dssp             SSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred             CCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEE
Confidence            34578888988876311100  0123564  44444 33456666665 78999999999988542        357899


Q ss_pred             EEEecCCCCCCCeeEEEEEechhhhhh
Q 025708          157 EVFDHDTFSADDIMGEAEIDIQPLLTS  183 (249)
Q Consensus       157 ~V~d~~~~~~d~~iG~~~i~l~~l~~~  183 (249)
                      +++.... +....||.+.|+|..++..
T Consensus        94 ELhqa~g-~~~~tla~~~I~l~~lLe~  119 (156)
T 2yrb_A           94 EVHQAYS-TEYETIAACQLKFHEILEK  119 (156)
T ss_dssp             EEEEECS-SCEEEEEEEEECCSHHHHC
T ss_pred             EEEEeeC-CCceEEEEEEEEhHHhhCc
Confidence            9988643 3456999999999999754

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}

Probab=85.47  E-value=0.18  Score=37.34  Aligned_cols=17  Identities=35%  Similarity=0.550  Sum_probs=14.5

Q ss_pred             cccCchHHHHHHhhcCC
Q 025708            3 EVGGNSSANAIYEAFIP   19 (249)
Q Consensus         3 ~~~gn~~~n~~~e~~~p   19 (249)
                      +.+||..||++||++-.
T Consensus        95 ~~~GN~~an~~~e~~g~  111 (144)
T 2p57_A           95 QVGGNANATAFFRQHGC  111 (144)
T ss_dssp             HHCCHHHHHHHHHHTTC
T ss_pred             HHhCHHHHHHHHHHcCC
Confidence            45799999999998853

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=83.74  E-value=1.8  Score=42.52  Aligned_cols=89  Identities=15%  Similarity=0.211  Sum_probs=59.2

Q ss_pred             eeeeEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCeE----EeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEE
Q 025708           90 EFIGLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVF  159 (249)
Q Consensus        90 ~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~----~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~  159 (249)
                      .....+.|+|..+.++...+  ..+-||.+.+  |.+.    ..|..+.-..+|.|||.+.|++.-    ....|.|+||
T Consensus       350 ~~~~~f~i~i~~~~~~~~~~--~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~  427 (1092)
T 2y3a_A          350 DNNNPFQITLVKGNKLNTEE--TVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVY  427 (1092)
T ss_dssp             CCCSEEEEEECCCCCCCCCS--SCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECC
T ss_pred             hcCCCEEEEEEEeccCCCCC--CceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEE
Confidence            44578999999999887553  3466766554  5543    445555556789999999998754    3467999999


Q ss_pred             ecCCC----------------------CCCCeeEEEEEechhh
Q 025708          160 DHDTF----------------------SADDIMGEAEIDIQPL  180 (249)
Q Consensus       160 d~~~~----------------------~~d~~iG~~~i~l~~l  180 (249)
                      +....                      +.+..||.+.++|-+.
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  470 (1092)
T 2y3a_A          428 AVLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDF  470 (1092)
T ss_dssp             CC------------------------------CCEEEEESBCT
T ss_pred             EecCccccccccccccccccccccccccccceeEEEeeeeECC
Confidence            85310                      0123889998888654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	249
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	3e-19
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	4e-19
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	5e-16
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	2e-15
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-15
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	4e-15
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	6e-15
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	2e-14
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-14
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	3e-14
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-13
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	4e-13
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	8e-13
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	1e-12
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	2e-12
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	7e-11
d1dcqa2	122	g.45.1.1 (A:247-368) Pyk2-associated protein beta	1e-10
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	4e-10
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	1e-07
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	3e-07
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	2e-04

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.6 bits (193), Expect = 3e-19
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 14/124 (11%)

Query: 92  IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEY 151
           + LL V V K      ++    + YV L++      TTI      P W ++ M  + +  
Sbjct: 1   MSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVK-STTIAVRGSQPSWEQDFMFEINRLD 57

Query: 152 GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLE 211
             + +EV++      D ++G   I ++ +  S               G+WL  D  A++ 
Sbjct: 58  LGLTVEVWNKGLIW-DTMVGTVWIPLRTIRQS----------NEEGPGEWLTLDSQAIMA 106

Query: 212 DSTI 215
           DS I
Sbjct: 107 DSEI 110

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 78.6 bits (193), Expect = 4e-19
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 92  IGLLKVKVVKGINLAIRDMMS-SDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQ 149
            G L+V +V    L   D ++  DPYV L    Q  ++ + +     P WNE  + +V +
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE 68

Query: 150 EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 183
               +K ++FD D  + DD +GEA I ++P+   
Sbjct: 69  GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVE 102

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 5e-16
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 89  VEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV 147
           V+ +G+L+VKV+K  +L   D    SDP+ +L LG   +QT  V  NLNP WN+     +
Sbjct: 2   VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61

Query: 148 PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPL 180
              +  +++ VFD D     D +G+  I +  +
Sbjct: 62  KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSI 94

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.0 bits (168), Expect = 2e-15
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 8/101 (7%)

Query: 93  GLLKVKVVKGINLAIRDMMS-SDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS 146
            +L V V    NL   D    SDPYV L+L      +   +T  +K +LNP WNE     
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 147 VPQEYGPVKL--EVFDHDTFSADDIMGEAEIDIQPLLTSAL 185
           + +     +L  E++D D  S +D MG     I  L  + +
Sbjct: 75  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV 115

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.6 bits (167), Expect = 2e-15
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 93  GLLKVKVVKGINLAIRDMMSS-DPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLS 146
             L V V+K  +L   D+    DPYV + L          +T + K   N V+NE  +  
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74

Query: 147 VPQE---YGPVKLEVFDHDTFSADDIMGEAEIDIQ 178
           +P E      V+  V D +  S ++++G   +   
Sbjct: 75  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 109

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (165), Expect = 4e-15
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 12/103 (11%)

Query: 93  GLLKVKVVKGINLAIRDM-MSSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS 146
             L V ++   +L  R+     +PYV +        +   +T  VK  L P WN+  + S
Sbjct: 14  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73

Query: 147 VPQEYG----PVKLEVFDHDTFS--ADDIMGEAEIDIQPLLTS 183
                      +++ ++D         + +GE  I+++  L  
Sbjct: 74  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 116

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.5 bits (164), Expect = 6e-15
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 11/123 (8%)

Query: 93  GLLKVKVVKGINLAIRDM-MSSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLS 146
           G L V +++ ++LA  D    SDP+V L L      +   +T I K  LNP +NEE    
Sbjct: 15  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74

Query: 147 VPQE---YGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKW-- 201
           +         + + V+D+D   ++D +G  ++ I         + +     + +I +W  
Sbjct: 75  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQ 134

Query: 202 LKS 204
           L++
Sbjct: 135 LQN 137

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 2e-14
 Identities = 30/157 (19%), Positives = 58/157 (36%), Gaps = 30/157 (19%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEY 151
             L++ V+       +       PYV + +  Q+ +T    +  +P W + L + V    
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVS 65

Query: 152 GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLE 211
             +   V+ H T  +D ++G A +DI   L S                      +N  LE
Sbjct: 66  -KLHFRVWSHQTLKSDVLLGTAALDIYETLKS----------------------NNMKLE 102

Query: 212 DSTINIIDGKVKQKISLKLQNVESGELELELEWMPLD 248
           +  + +  G  K+           G+L + L+ + L+
Sbjct: 103 EVVVTLQLGGDKEP------TETIGDLSICLDGLQLE 133

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.9 bits (160), Expect = 2e-14
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 93  GLLKVKVVKGINLAIRDM-MSSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP 148
             L V +++   L   DM  +SDPYV + L    ++  +T + +  LNPV+NE+    VP
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 149 QEYGP---VKLEVFDHDTFSADDIMGEAEIDIQPL 180
                   + + V+D D FS  DI+GE ++ +  +
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 65.7 bits (159), Expect = 3e-14
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 14/109 (12%)

Query: 88  MVEFIGLLKVKVVKGINLAIRDMM------------SSDPYVVLRLGQQTV-QTTIVKSN 134
           MV F GLLK+K+ + ++L                    DPY+ L +    + QT   +  
Sbjct: 1   MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60

Query: 135 LNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 183
            +P W++E +  V      ++L VF       DD +    I  + LL +
Sbjct: 61  NSPAWHDEFVTDVCNGR-KIELAVFHDAPIGYDDFVANCTIQFEELLQN 108

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.3 bits (153), Expect = 3e-13
 Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 9/120 (7%)

Query: 93  GLLKVKVVKGINLAIRDMMS-SDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLS 146
           G L V +++  NL   D+   SDPYV + L Q     +  +TTI K+ LNP +NE     
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 147 VPQE---YGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK 203
           VP E      V + V D+D    +D +G+  +           + D        I +W  
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHT 144

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 4e-13
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 16/117 (13%)

Query: 80  SSQKKDVGMVEF-------IGLLKVKVVKGINLAIRDMMS--SDPYVVLRL---GQQTVQ 127
           SS    +G + F            V + +   L   D  S  SDPY+ + +    +  V+
Sbjct: 2   SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVK 61

Query: 128 TTIVKSNLNPVWNEEL-MLSVPQE---YGPVKLEVFDHDTFSADDIMGEAEIDIQPL 180
           T +++  L+P ++E      +P        +   +   D FS DDI+GE  I +  +
Sbjct: 62  TRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.7 bits (149), Expect = 8e-13
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 95  LKVKVVKGINLAIRDMMS---SDPYVV-----LRLGQQTVQTTIVK-SNLNPVWNEELML 145
           L+V+++ G  L   +       DP V+     +     + QT ++  +  NP W+ E   
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 146 SVPQEYG-PVKLEVFDHDTFSADDIMGEAEIDIQ 178
            V       V+  V D+D+ S +D +G++ I   
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWN 99

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 1e-12
 Identities = 24/160 (15%), Positives = 47/160 (29%), Gaps = 47/160 (29%)

Query: 95  LKVKVVKGINLAIRDMM----SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSV 147
             V V++   +          + DPYV L +        +T    +++NPVWNE     +
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 148 PQEYG-PVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206
                  +++ + D +    D+ +G A   +  +                          
Sbjct: 65  DPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVG----------------------- 100

Query: 207 NALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 246
                           K+++      V    LE+ LE   
Sbjct: 101 ---------------EKKEVPFIFNQVTEMVLEMSLEVAS 125

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.0 bits (147), Expect = 2e-12
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 16/114 (14%)

Query: 81  SQKKDVGMVEF-------IGLLKVKVVKGINLAIRDMMSS-DPYVVLRLG-----QQTVQ 127
           S+K D+G + F        GLL V ++K  NL   D+    DPYV   L       +  +
Sbjct: 1   SEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRK 60

Query: 128 TTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHDTFSADDIMGEAEIDIQ 178
           T+I K+ LNP +NE L+  V  E      + + V D+D    ++++G   +  +
Sbjct: 61  TSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPE 114

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.4 bits (135), Expect = 7e-11
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 19/107 (17%)

Query: 93  GLLKVKVVKGINLAIRDMMS-SDPYVVLRL--------------GQQTVQTTIVKSNLNP 137
           G L + +++  NL  RD    SDP+V + L               +   +T  V+ +LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 138 VWNEELMLSVPQEYGP----VKLEVFDHDTFSADDIMGEAEIDIQPL 180
            WN+ ++             +++ V+D+D FS++D +GE  ID+   
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.0 bits (132), Expect = 1e-10
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 1   MIEVGGNSSANAIYEAFIP-EGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 50
           + +  GN+  N I E  +P E   KP P S    R  +I +KY  + + + 
Sbjct: 70  LAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARK 120

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.2 bits (129), Expect = 4e-10
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 93  GLLKVKVVKGINLAIRDMM-SSDPYVV---LRLGQQTVQTTIVKSNLNPVWNEELMLSVP 148
             L V++++ ++L  +D    SDPYV    L   ++  QT + +  LNP++NE    SVP
Sbjct: 18  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 77

Query: 149 QE---YGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 183
                   +   V+D D FS  D++G+  +D    L  
Sbjct: 78  LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAE 115

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 1e-07
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 16/118 (13%)

Query: 77  STNSSQKKDVGMVEF-------IGLLKVKVVKGINLAIRDMMSSDPYVVLRL----GQQT 125
           S +S        + +          L V  ++ +          D YV   +    G   
Sbjct: 3   SGSSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTSNHDGGC--DCYVQGSVANRTGSVE 60

Query: 126 VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF---DHDTFSADDIMGEAEIDIQPL 180
            QT + K  L+  W E L+L + +E  P           D FS   + GE  + +   
Sbjct: 61  AQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT 118

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 3e-07
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 18/94 (19%)

Query: 95  LKVKVVKGINLAIRDMMSSDPYVVLRL-------GQQTVQTTIVKSN-LNPVWNEELMLS 146
           L + V+ G  L+ R       YV + L        ++        +N +NPVW EE  + 
Sbjct: 3   LSITVISGQFLSERS---VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVF 59

Query: 147 VPQEYGP---VKLEVFDHDTFSADDIMGEAEIDI 177
                     +++ V +      +  +G   I I
Sbjct: 60  EKILMPELASLRVAVMEEG----NKFLGHRIIPI 89

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 6/75 (8%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 112 SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDH-DTFS 165
           +S P+  +++       +       K  + P W       + +    +++ +    +   
Sbjct: 23  ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGR-VIQIVLMRAAEDPM 81

Query: 166 ADDIMGEAEIDIQPL 180
           ++  +G + +  +  
Sbjct: 82  SEVTVGVSVLAERCK 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	249
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.92
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.92
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.88
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.88
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.88
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.86
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.84
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.84
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.83
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.83
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.83
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.81
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.81
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.81
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.78
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.77
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.76
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.76
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.73
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.48
d1dcqa2	122	Pyk2-associated protein beta ARF-GAP domain {Mouse	99.08
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.23

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=2.3e-24  Score=161.66  Aligned_cols=127  Identities=26%  Similarity=0.412  Sum_probs=106.2

Q ss_pred             cccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeec-CcCCceeeeeEEEEeeCCCccEEEEEEecCC
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQEYGPVKLEVFDHDT  163 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~-~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~  163 (249)
                      .++..+.|+|+|+|++|++|+..+.. .+||||+++++.+.++|++++ ++.||.|||+|.|.+......|.|+|||++.
T Consensus         3 ~~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~   82 (136)
T d1wfja_           3 SGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDV   82 (136)
T ss_dssp             CCCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSS
T ss_pred             CCCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecC
Confidence            34566789999999999999998875 899999999999999999987 5899999999999998866779999999999


Q ss_pred             CCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEE
Q 025708          164 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELE  243 (249)
Q Consensus       164 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~  243 (249)
                      +++|++||++.|+|.++....           .....|+++                        .-....+|+|+|.|+
T Consensus        83 ~~~d~~iG~~~i~L~~l~~~~-----------~~~~~~~~l------------------------~~~~~~~G~i~l~l~  127 (136)
T d1wfja_          83 GTEDDAVGEATIPLEPVFVEG-----------SIPPTAYNV------------------------VKDEEYKGEIWVALS  127 (136)
T ss_dssp             CTTTCCSEEEEEESHHHHHHS-----------EEEEEEEEE------------------------EETTEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEEEhHHhcccC-----------CcCcEEEEe------------------------cCCCccCEEEEEEEE
Confidence            999999999999999986542           223456652                        113334699999999


Q ss_pred             EEeC
Q 025708          244 WMPL  247 (249)
Q Consensus       244 ~~~~  247 (249)
                      |.|.
T Consensus       128 ~~p~  131 (136)
T d1wfja_         128 FKPS  131 (136)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9985

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.1e-25  Score=163.20  Aligned_cols=122  Identities=28%  Similarity=0.481  Sum_probs=103.8

Q ss_pred             eeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCC
Q 025708           90 EFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADD  168 (249)
Q Consensus        90 ~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~  168 (249)
                      +..|.|+|+|++|++|+.++.. .+||||++.+++++++|++++++.||.|||+|.|.+......|.|+|||++.+++|+
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcc
Confidence            3579999999999999998876 899999999999999999999999999999999999886688999999999999999


Q ss_pred             eeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEe
Q 025708          169 IMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP  246 (249)
Q Consensus       169 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~  246 (249)
                      +||++.++|.++..+              ...|+.+...                     .++...+|+|+|+|+++.
T Consensus        83 ~lG~~~i~l~~l~~~--------------~~~~~~l~~~---------------------~~~~~~~G~i~l~~~~i~  125 (126)
T d2ep6a1          83 FLGKVAIPLLSIRDG--------------QPNCYVLKNK---------------------DLEQAFKGVIYLEMDLIY  125 (126)
T ss_dssp             ECCBCEEEGGGCCSS--------------CCEECCCBCS---------------------CTTSCCSSEEEEEEEEEE
T ss_pred             eEEEEEEEHHHCCCC--------------CceEEEcccc---------------------CCCCceeEEEEEEEEEEE
Confidence            999999999988432              1357764332                     124445799999999863

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.88  E-value=6.3e-22  Score=148.25  Aligned_cols=119  Identities=24%  Similarity=0.484  Sum_probs=99.1

Q ss_pred             eeeeEEEEEEEEeecCCCCC------------CCCCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEE
Q 025708           90 EFIGLLKVKVVKGINLAIRD------------MMSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKL  156 (249)
Q Consensus        90 ~~~g~L~V~v~~a~~L~~~~------------~~~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i  156 (249)
                      -+.|.|+|+|++|++|++.+            .+.+||||++.++.+. .+|+++.++.+|.|||+|.|.+... ..|.|
T Consensus         3 ~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~-~~l~i   81 (136)
T d1gmia_           3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIEL   81 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEE
T ss_pred             cEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC-CceEE
Confidence            46899999999999998753            1268999999999866 5899999999999999999999764 68999


Q ss_pred             EEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCc
Q 025708          157 EVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESG  236 (249)
Q Consensus       157 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G  236 (249)
                      +|||++.+++|++||.+.|+|.++....          ....+.||+                          |+  ++|
T Consensus        82 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~----------~~~~~~w~~--------------------------L~--p~G  123 (136)
T d1gmia_          82 AVFHDAPIGYDDFVANCTIQFEELLQNG----------SRHFEDWID--------------------------LE--PEG  123 (136)
T ss_dssp             EEEECCSSSSCEEEEEEEEEHHHHTSTT----------CSEEEEEEE--------------------------CB--SSC
T ss_pred             EEEEecCCCCceeEEEEEEEHHHhhhcC----------CcceeEEEe--------------------------CC--CCc
Confidence            9999999999999999999999996442          223456665                          43  479


Q ss_pred             eEEEEEEEEeC
Q 025708          237 ELELELEWMPL  247 (249)
Q Consensus       237 ~i~l~l~~~~~  247 (249)
                      +|+|++++.+-
T Consensus       124 ~v~l~v~~~~~  134 (136)
T d1gmia_         124 KVYVIIDLSGS  134 (136)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEeC
Confidence            99999998763

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-22  Score=149.17  Aligned_cols=116  Identities=20%  Similarity=0.339  Sum_probs=96.4

Q ss_pred             eeEEEEEEEEeecCCCCCC----CCCCcEEEEEECC---eEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCC
Q 025708           92 IGLLKVKVVKGINLAIRDM----MSSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDT  163 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~----~~~dpyv~v~l~~---~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~  163 (249)
                      .+.|+|+|++|++|+....    +.+||||++.++.   ++++|+++.++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            4789999999999997532    3789999999965   56899999999999999999999977 44679999999987


Q ss_pred             CCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEE
Q 025708          164 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELE  243 (249)
Q Consensus       164 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~  243 (249)
                      . +|++||++.++|.++..            +.....||+                          |....+|+|+++|+
T Consensus        82 ~-~d~~lG~~~i~L~~l~~------------~~~~~~~~~--------------------------L~~~~~g~i~~~l~  122 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKV------------GEKKEVPFI--------------------------FNQVTEMVLEMSLE  122 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCT------------TCEEEEEEE--------------------------ETTTEEEEEEEEEE
T ss_pred             C-CCCeEEEEEEEHHHccC------------CCeEEEEEE--------------------------ccCCCeEEEEEEEE
Confidence            5 68999999999999832            234456665                          66667899999998


Q ss_pred             EEe
Q 025708          244 WMP  246 (249)
Q Consensus       244 ~~~  246 (249)
                      +.|
T Consensus       123 ~~~  125 (126)
T d1rlwa_         123 VAS  125 (126)
T ss_dssp             CCC
T ss_pred             EEe
Confidence            875

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.4e-21  Score=145.84  Aligned_cols=91  Identities=23%  Similarity=0.406  Sum_probs=82.6

Q ss_pred             eeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCee
Q 025708           92 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM  170 (249)
Q Consensus        92 ~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~i  170 (249)
                      .+.|.|+|++|++++..+.. .+||||++.++++.++|++++++.||.|||.|.|.+.. ...|.|+|||++.+++|++|
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~i   83 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLL   83 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEE
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCCCCceE
Confidence            47899999999999987765 89999999999999999999999999999999999876 46899999999999999999


Q ss_pred             EEEEEechhhhhh
Q 025708          171 GEAEIDIQPLLTS  183 (249)
Q Consensus       171 G~~~i~l~~l~~~  183 (249)
                      |++.++|.++...
T Consensus        84 G~~~i~L~~l~~~   96 (133)
T d2nq3a1          84 GTAALDIYETLKS   96 (133)
T ss_dssp             EEEEEEHHHHHHH
T ss_pred             EEEEEEHHHhhhh
Confidence            9999999998754

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=2.3e-21  Score=144.37  Aligned_cols=103  Identities=31%  Similarity=0.470  Sum_probs=88.7

Q ss_pred             eeeEEEEEEEEeecCCCCCCC-CCCcEEEEEE-----CCeEEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEEEecC
Q 025708           91 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHD  162 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V~d~~  162 (249)
                      ..+.|+|+|++|++|+.++.. .+||||++++     +..+++|+++++|.||.|||.|.|.+..  ....|.|+|||++
T Consensus        13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d   92 (132)
T d1a25a_          13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD   92 (132)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecC
Confidence            358899999999999998876 8899999999     4457899999999999999999999876  2357999999999


Q ss_pred             CCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          163 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       163 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      .+++|++||.+.|+|.++..+             .+.+||+|.+
T Consensus        93 ~~~~d~~iG~~~i~l~~l~~~-------------~~~~W~~L~~  123 (132)
T d1a25a_          93 LTSRNDFMGSLSFGISELQKA-------------GVDGWFKLLS  123 (132)
T ss_dssp             SSSCCEEEEEEEEEHHHHTTC-------------CEEEEEECBC
T ss_pred             CCCCCcEeEEEEEeHHHcCCC-------------CCCeEEECCC
Confidence            999999999999999998321             3578998644

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=3e-21  Score=144.81  Aligned_cols=122  Identities=25%  Similarity=0.325  Sum_probs=94.3

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEE--CC---eEEeeeeecCcCCceeeeeEEEEeeC---CCccEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL--GQ---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVK  155 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~---~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~  155 (249)
                      ++.|....+.|.|+|++|++|+..+.. .+||||++++  +.   .+++|++++++.||.|||+|.|.+..   ....|.
T Consensus         7 sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~   86 (138)
T d1w15a_           7 SLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVE   86 (138)
T ss_dssp             EEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEE
T ss_pred             EEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEE
Confidence            456777788999999999999988876 8899999998  32   34689999999999999999999865   334699


Q ss_pred             EEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          156 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      |+|||++.++++++||++.|++.....+..++.......+..+..|++|.+
T Consensus        87 i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~~  137 (138)
T d1w15a_          87 FLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD  137 (138)
T ss_dssp             EEEEECCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             EEEEeCCCCCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEccc
Confidence            999999999999999999999987655544322112245678889998765

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=1.1e-20  Score=142.48  Aligned_cols=108  Identities=28%  Similarity=0.439  Sum_probs=92.1

Q ss_pred             cccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEE---CCeEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEEE
Q 025708           86 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEV  158 (249)
Q Consensus        86 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~~~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V  158 (249)
                      +.|....+.|.|+|++|+||+.++.. .+||||++++   +..+++|++++++.||.|||+|.|.+..   ....|.|+|
T Consensus        27 l~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V  106 (143)
T d1rsya_          27 LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAV  106 (143)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEE
T ss_pred             EEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEE
Confidence            45556678999999999999988876 8899999998   4456899999999999999999999865   356799999


Q ss_pred             EecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecC
Q 025708          159 FDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD  205 (249)
Q Consensus       159 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~  205 (249)
                      ||++.++++++||++.|+|.++.            .+.....||+|.
T Consensus       107 ~d~d~~~~~~~iG~~~i~L~~~~------------~~~~~~~W~~L~  141 (143)
T d1rsya_         107 YDFDRFSKHDIIGEFKVPMNTVD------------FGHVTEEWRDLQ  141 (143)
T ss_dssp             EECCSSSCCEEEEEEEEEGGGCC------------CSSCEEEEEECB
T ss_pred             EEcCCCCCCcEEEEEEEEchhcc------------CCCCCccEEeCC
Confidence            99999999999999999999983            234567899853

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=6.9e-20  Score=135.27  Aligned_cols=101  Identities=23%  Similarity=0.388  Sum_probs=86.3

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEE
Q 025708           93 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE  172 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~  172 (249)
                      +.|+|+|.+|++|.+.+  ..||||++.+++.+.+|.++++ .||.|||.|.|.+......|.|+|||++.. .|++||+
T Consensus         2 ~~L~V~v~~a~~l~~~~--~~dpYv~l~~~~~k~~T~~~k~-~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~lG~   77 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVGT   77 (128)
T ss_dssp             EEEEEEEEEEECSSCGG--GCEEEEEEEETTEEEECCCEES-SSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEEEE
T ss_pred             eEEEEEEEEEECCCCCC--CcCeEEEEEeCCEEEEEEEecC-CCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcceEE
Confidence            67999999999999877  4699999999999999998864 599999999999988778899999999986 6899999


Q ss_pred             EEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708          173 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  207 (249)
Q Consensus       173 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~  207 (249)
                      +.|+|+++..+.          ....+.||+|...
T Consensus        78 ~~I~L~~l~~~~----------~~~~~~W~~L~~~  102 (128)
T d2cjta1          78 VWIPLRTIRQSN----------EEGPGEWLTLDSQ  102 (128)
T ss_dssp             EEEEGGGSCBCS----------SCCCCEEEECBC-
T ss_pred             EEEEehhhccCC----------CCCCCeeEECCcc
Confidence            999999985432          2346689997553

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1e-20  Score=141.62  Aligned_cols=121  Identities=24%  Similarity=0.341  Sum_probs=96.8

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEEeeC---CCccEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVK  155 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~  155 (249)
                      ++.|....+.|.|.|++|+||+..+.. .+||||++++.     ..+++|++++++.+|.|||+|.|.+..   ....|.
T Consensus         7 ~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~   86 (137)
T d2cm5a1           7 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLD   86 (137)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEE
T ss_pred             EEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEE
Confidence            356677789999999999999988765 89999999982     245799999999999999999999875   245799


Q ss_pred             EEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecC
Q 025708          156 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD  205 (249)
Q Consensus       156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~  205 (249)
                      |+|||++.++++++||++.+++..+..+..++.......+..+..|.+|+
T Consensus        87 v~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~v~~Wh~L~  136 (137)
T d2cm5a1          87 ISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQ  136 (137)
T ss_dssp             EEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECB
T ss_pred             EEeeeCCCCCCCCEEEEEEeCccccCcchhhhhhHhhCCCCeeeEceecc
Confidence            99999999999999999999998775544332212224556777887754

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=2e-20  Score=138.86  Aligned_cols=96  Identities=29%  Similarity=0.486  Sum_probs=84.1

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC---CeEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLE  157 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~  157 (249)
                      ++.|....+.|.|+|++|++|+..+.. .+||||++++.   .++++|++++++.||.|||+|.|.+..   ....|.|+
T Consensus        10 sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~   89 (130)
T d1dqva1          10 ALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFS   89 (130)
T ss_dssp             EEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEE
T ss_pred             EEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEE
Confidence            466777889999999999999988876 89999999993   456899999999999999999999865   34679999


Q ss_pred             EEecCCCCCCCeeEEEEEechhh
Q 025708          158 VFDHDTFSADDIMGEAEIDIQPL  180 (249)
Q Consensus       158 V~d~~~~~~d~~iG~~~i~l~~l  180 (249)
                      |||++.+++|++||++.|++...
T Consensus        90 V~d~~~~~~d~~iG~~~i~~~~~  112 (130)
T d1dqva1          90 VYDFDRFSRHDLIGQVVLDNLLE  112 (130)
T ss_dssp             EEECCSSSCCCEEEEEECCCTTG
T ss_pred             EEEcCCCCCCceEEEEEECchhh
Confidence            99999999999999999986544

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=1.6e-19  Score=134.03  Aligned_cols=89  Identities=27%  Similarity=0.475  Sum_probs=75.6

Q ss_pred             eEEEEEEEEeecCCCCCC--C-CCCcEEEEEE-----CCeEEeeeeecCc-CCceeeeeEEEEeeC-CCccEEEEEEecC
Q 025708           93 GLLKVKVVKGINLAIRDM--M-SSDPYVVLRL-----GQQTVQTTIVKSN-LNPVWNEELMLSVPQ-EYGPVKLEVFDHD  162 (249)
Q Consensus        93 g~L~V~v~~a~~L~~~~~--~-~~dpyv~v~l-----~~~~~kT~~~~~t-~~P~W~e~f~f~v~~-~~~~L~i~V~d~~  162 (249)
                      ..|+|+|++|++|+..+.  + .+||||++++     +..+++|++++++ +||.|||+|.|.+.. ....|.|+|||++
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            479999999999986543  3 7899999998     3467899987655 799999999998866 4467999999999


Q ss_pred             CCCCCCeeEEEEEechhhh
Q 025708          163 TFSADDIMGEAEIDIQPLL  181 (249)
Q Consensus       163 ~~~~d~~iG~~~i~l~~l~  181 (249)
                      .+++|++||++.|+|.++.
T Consensus        84 ~~~~d~~iG~~~i~l~~l~  102 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLK  102 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBC
T ss_pred             CCCCCcEEEEEEEEEeccC
Confidence            9999999999999999884

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=2.8e-20  Score=142.47  Aligned_cols=123  Identities=28%  Similarity=0.356  Sum_probs=98.4

Q ss_pred             cccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeCC---CccE
Q 025708           84 KDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPV  154 (249)
Q Consensus        84 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~~---~~~L  154 (249)
                      .++.|....+.|.|+|++|+||+..+.. .+||||++++..     ..++|++++++.||+|||+|.|.+...   ...|
T Consensus        16 ~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l   95 (157)
T d1uowa_          16 FSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQV   95 (157)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEE
T ss_pred             EEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEE
Confidence            3456777789999999999999988775 899999999832     236899999999999999999998762   4579


Q ss_pred             EEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      .|+|||++.++++++||++.|++.....+..++..........+..|++|..
T Consensus        96 ~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_          96 VVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (157)
T ss_dssp             EEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             EEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence            9999999999999999999999987655444332222344567889998654

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=6.6e-21  Score=143.48  Aligned_cols=104  Identities=28%  Similarity=0.457  Sum_probs=87.0

Q ss_pred             eeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC--------------eEEeeeeecCcCCceeeeeEEEEeeC----CC
Q 025708           91 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ--------------QTVQTTIVKSNLNPVWNEELMLSVPQ----EY  151 (249)
Q Consensus        91 ~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~--------------~~~kT~~~~~t~~P~W~e~f~f~v~~----~~  151 (249)
                      ..|.|.|+|++|+||+.++.. .+||||++++..              .+++|++++++.||.|||+|.|.+..    ..
T Consensus        16 ~~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~   95 (142)
T d1rh8a_          16 DLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             ETTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTT
T ss_pred             eCCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCC
Confidence            358999999999999998876 899999999832              23579999999999999999998433    35


Q ss_pred             ccEEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          152 GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       152 ~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      ..|.|+|||++.+++|++||++.|+|.++..+            .....||+|.+
T Consensus        96 ~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~------------~~~~~W~~L~~  138 (142)
T d1rh8a_          96 KTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL------------DNTPRWYPLKE  138 (142)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEETTSCGGG------------TTCCEEEECBC
T ss_pred             CEEEEEEEEecCCCCCeeeEEEEEEhHHcCCC------------CCceEEEECcC
Confidence            67999999999999999999999999998433            23568998655

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.9e-19  Score=130.84  Aligned_cols=97  Identities=22%  Similarity=0.403  Sum_probs=78.1

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEE-----CCeEEeeeeecCcCCceeeeeEEEE-eeC---CCccE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPV  154 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~kT~~~~~t~~P~W~e~f~f~-v~~---~~~~L  154 (249)
                      ++.|....+.|.|+|++|+||+..+.. .+||||++.+     ...+++|++++++.+|.|||+|.|. +..   ....|
T Consensus         6 ~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L   85 (125)
T d2bwqa1           6 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERML   85 (125)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEE
T ss_pred             EEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEE
Confidence            355666778999999999999988776 8999999998     2346899999999999999999997 443   24579


Q ss_pred             EEEEEecCCCC--CCCeeEEEEEechhhh
Q 025708          155 KLEVFDHDTFS--ADDIMGEAEIDIQPLL  181 (249)
Q Consensus       155 ~i~V~d~~~~~--~d~~iG~~~i~l~~l~  181 (249)
                      .|+|||++.++  ++++||++.|+|.++.
T Consensus        86 ~i~v~d~~~~~~~~~~~iG~~~i~l~~~~  114 (125)
T d2bwqa1          86 EITLWDQARVREEESEFLGEILIELETAL  114 (125)
T ss_dssp             EEEEEEC-------CEEEEEEEEEGGGCC
T ss_pred             EEEEEECCCCCCCCCeeEEEEEEEchhcC
Confidence            99999999764  4569999999999884

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.3e-19  Score=131.04  Aligned_cols=96  Identities=23%  Similarity=0.438  Sum_probs=83.7

Q ss_pred             ccccceeeeEEEEEEEEeecCCCCCCC--CCCcEEEEEE---CCeEEeeeeecCcCCceeeeeEEEE-eeC---CCccEE
Q 025708           85 DVGMVEFIGLLKVKVVKGINLAIRDMM--SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVK  155 (249)
Q Consensus        85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l---~~~~~kT~~~~~t~~P~W~e~f~f~-v~~---~~~~L~  155 (249)
                      ++.|....+.|.|+|++|+||+.++..  .+||||++.+   ...+++|++++++.||.|||+|.|. +..   ....|.
T Consensus        14 sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~   93 (138)
T d1ugka_          14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALH   93 (138)
T ss_dssp             EEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEE
T ss_pred             EEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEE
Confidence            466777789999999999999988764  5799999999   4567899999999999999999997 443   235799


Q ss_pred             EEEEecCCCCCCCeeEEEEEechhh
Q 025708          156 LEVFDHDTFSADDIMGEAEIDIQPL  180 (249)
Q Consensus       156 i~V~d~~~~~~d~~iG~~~i~l~~l  180 (249)
                      |+|||++.+++|++||++.|+|.++
T Consensus        94 ~~V~d~d~~~~~~~iG~~~i~L~~~  118 (138)
T d1ugka_          94 FTILSFDRFSRDDIIGEVLIPLSGI  118 (138)
T ss_dssp             EEEEEECSSCCCCCCEEEEEECTTC
T ss_pred             EEEEECCCCCCCcEEEEEEEEcccc
Confidence            9999999999999999999999987

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.6e-18  Score=129.79  Aligned_cols=109  Identities=18%  Similarity=0.249  Sum_probs=89.5

Q ss_pred             cccccceeeeEEEEEEEEeecCCCCCCCCCCcEEEEEECC----eEEeeeeecCcCCceeeeeEEEEeeC---CCccEEE
Q 025708           84 KDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKL  156 (249)
Q Consensus        84 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i  156 (249)
                      .++.|....+.|.|+|++|++|+..  +.+||||++.+.+    ..++|++++++.+|.|||.|.|.+..   ....|.|
T Consensus        17 ~sl~y~~~~~~L~V~v~~a~~L~~~--g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~   94 (138)
T d1wfma_          17 YCLDYDCQKAELFVTRLEAVTSNHD--GGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTL   94 (138)
T ss_dssp             EEEEEETTTTEEEEEEEEEECCCCS--SCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEE
T ss_pred             EEEEECCCCCEEEEEEEEcCCCCCC--CCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEE
Confidence            3456677789999999999999643  3679999999932    34789999999999999999999865   3467999


Q ss_pred             EEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708          157 EVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       157 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      +|||++.++++++||++.|+|.++..            ......|+.|..
T Consensus        95 ~V~d~~~~~~~~~iG~~~i~L~~l~~------------~~~~~~W~~L~~  132 (138)
T d1wfma_          95 TLRTCDRFSRHSVAGELRLGLDGTSV------------PLGAAQWGELKT  132 (138)
T ss_dssp             EEEECCSSCTTSCSEEEEEESSSSSS------------CTTCCEEEECCC
T ss_pred             EEeeecccccceeeeEEEEEhHHccC------------CCCceEeEeCCC
Confidence            99999999999999999999998832            234567988644

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=8.6e-20  Score=137.88  Aligned_cols=123  Identities=24%  Similarity=0.369  Sum_probs=99.0

Q ss_pred             cccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccE
Q 025708           84 KDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPV  154 (249)
Q Consensus        84 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L  154 (249)
                      .++.|.+..|.|.|+|++|+||+..+.. .+||||++++..     .+++|++++++.||.|||.|.|.+..   ....|
T Consensus        11 ~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l   90 (145)
T d1dqva2          11 FSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGL   90 (145)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCC
T ss_pred             EEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEE
Confidence            3466777889999999999999988765 789999999853     24789999999999999999998865   34679


Q ss_pred             EEEEEecCCCCCCCeeEEEEEechhhhhhh-hhcCCCCCcCCeeeeeeEecCC
Q 025708          155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSA-LAFGDPEMFGNMQIGKWLKSDD  206 (249)
Q Consensus       155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~-~~~~~~~~~~~~~~~~w~~~~~  206 (249)
                      .|.|||++.++++++||++.|+|..+.... .++......++..+..|++|..
T Consensus        91 ~v~v~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~p~~~i~~Wh~L~~  143 (145)
T d1dqva2          91 SIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE  143 (145)
T ss_dssp             CCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBB
T ss_pred             EEEEEecCCCCCCcEEEEEEECchHcCchhhHHHHHHHhCCCCeeeEeEECCC
Confidence            999999999999999999999998874332 2222233456777888987543

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=2.7e-17  Score=120.40  Aligned_cols=112  Identities=13%  Similarity=0.254  Sum_probs=83.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCcEEEEEECCe-----EEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCC
Q 025708           94 LLKVKVVKGINLAIRDMMSSDPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADD  168 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~-----~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~  168 (249)
                      .+.|.+..+..++.. .+.+||||++.+...     ..+|+++++|+||+|||+|.|.+... ..|.|.|||+|    ++
T Consensus         6 ~~~~~~~~~~~~~~~-~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~-~~l~i~V~d~d----d~   79 (123)
T d1bdya_           6 RISFNSYELGSLQAE-DDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG-RVIQIVLMRAA----ED   79 (123)
T ss_dssp             EEEEEEEECCTTCCC-CCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTT-CEEEEEEEEET----TE
T ss_pred             EEEEEEeecccCCCC-CCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccc-cEEEEEEEEcc----cc
Confidence            344555555554433 237899999999542     36789999999999999999999764 68999999976    68


Q ss_pred             eeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEe
Q 025708          169 IMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP  246 (249)
Q Consensus       169 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~  246 (249)
                      ++|.+.+++..+......       .+...+.|+                          .|+  ++|+|+|+++|..
T Consensus        80 ~~g~~~i~l~~l~~~~~~-------~~~~~~~W~--------------------------~L~--~~Gkl~l~v~~f~  122 (123)
T d1bdya_          80 PMSEVTVGVSVLAERCKK-------NNGKAEFWL--------------------------DLQ--PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEEHHHHHHHHHT-------TTTEEEEEE--------------------------ECB--SSCEEEEEEEEEE
T ss_pred             ccCccEEehhheeecccc-------CCCcccEEE--------------------------eCC--CCEEEEEEEEEec
Confidence            999999999999765322       222344554                          454  5899999999975

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4e-13  Score=97.63  Aligned_cols=84  Identities=26%  Similarity=0.500  Sum_probs=63.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCcEEEEEEC------CeEEeeee--ecCcCCceeeee-EEEE-eeC-CCccEEEEEEecC
Q 025708           94 LLKVKVVKGINLAIRDMMSSDPYVVLRLG------QQTVQTTI--VKSNLNPVWNEE-LMLS-VPQ-EYGPVKLEVFDHD  162 (249)
Q Consensus        94 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l~------~~~~kT~~--~~~t~~P~W~e~-f~f~-v~~-~~~~L~i~V~d~~  162 (249)
                      +|+|+|++|++|+..   ..||||++++-      ..+.+|++  ..++.||.|||+ |.|. +.. ....|.|.|||++
T Consensus         2 tl~V~Visaq~L~~~---~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d   78 (122)
T d2zkmx2           2 TLSITVISGQFLSER---SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG   78 (122)
T ss_dssp             EEEEEEEEEESCCSS---CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT
T ss_pred             EEEEEEEEeeCCCCC---CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC
Confidence            689999999999865   46999999982      23344444  467899999976 4443 333 3357999999975


Q ss_pred             CCCCCCeeEEEEEechhhhhhh
Q 025708          163 TFSADDIMGEAEIDIQPLLTSA  184 (249)
Q Consensus       163 ~~~~d~~iG~~~i~l~~l~~~~  184 (249)
                          |++||++.++|+.+..+.
T Consensus        79 ----~~~lG~~~ipl~~l~~Gy   96 (122)
T d2zkmx2          79 ----NKFLGHRIIPINALNSGY   96 (122)
T ss_dssp             ----TEEEEEEEEEGGGBCCEE
T ss_pred             ----CCEEEEEEEEcccCcCCc
Confidence                789999999999996543

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=3.4e-11  Score=86.84  Aligned_cols=48  Identities=29%  Similarity=0.481  Sum_probs=43.4

Q ss_pred             cccCchHHHHHHhhcCCC-CCCCCCCCCCHHHHHHHHHHHhhcccccCC
Q 025708            3 EVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFLKP   50 (249)
Q Consensus         3 ~~~gn~~~n~~~e~~~p~-~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~   50 (249)
                      +.+||..+|++||+++|. .+.||.++++...|++||++||++++|+..
T Consensus        72 ~~~GN~~~n~~~ea~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~k  120 (122)
T d1dcqa2          72 KNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARK  120 (122)
T ss_dssp             HHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCC
T ss_pred             HHHhHHHHHHHHHhhCCcccCcCCCCCccHHHHHHHHHHHHHhCccccc
Confidence            456999999999999996 577999999999999999999999999854