Citrus Sinensis ID: 025709

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
MDGLSNAFSVLELDADDSQVKTPAAASSSSSSSSSCKSVESKSKANSSSNLTLENQQNSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFKTNLKK
cccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccEEEEEEEEEEcccccEEEccccEEEcccHHHHHHcccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccHHHcHHHHHHHHHHHHHHccccEEEcccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccc
ccHHHHHHHEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHccccccEEEEEEccccccccccEEEEEEEEEEcccccEEccccEEEEEccHHHHHHHHHHHHcccccccHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccc
MDGLSNAFSVleldaddsqvktpaaassssssssscksveskskansssnltlenqqnsqtplefeykmPLVWIDLEMTGLKIEVDRILEIACIItdgkltksvegpdlvIHQTKECLDSMgewcqnhheasglTKKVLHSGLTEREAEKQVVEFVKKnvgtytpllagnsVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMrwyprdyrkvpskeqkHRALDDIRESIMELKYYKENIFKTNLKK
MDGLSNAFSVLELDADDSQVKTpaaassssssssscksVESKskansssnltlenqqnsqtpleFEYKMPLVWIDLEMTGLKIEVDRILEIACIITdgkltksvegpdLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKnvgtytpllagNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWyprdyrkvpskeqkhraLDDIRESimelkyykenifktnlkk
MDGLSNAFSVLELDADDSQVKTPaaassssssssscksveskskansssNLTLENQQNSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFKTNLKK
**************************************************************LEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKV***********DIRESIMELKYYKENIF******
****SNA*SVLELDA******************************************************PLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFKT****
MDGLSNAFSVLELDAD********************************************TPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYR*********RALDDIRESIMELKYYKENIFKTNLKK
*DGLSNAFSVLEL*****************************************************YKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFKTNL**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDGLSNAFSVLELDADDSQVKTPAAASSSSSSSSSCKSVESKSKANSSSNLTLENQQNSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFKTNLKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query249 2.2.26 [Sep-21-2011]
Q9ZVE0222 Oligoribonuclease OS=Arab yes no 0.883 0.990 0.628 5e-84
A2VE52237 Oligoribonuclease, mitoch yes no 0.694 0.729 0.514 5e-48
Q5U1X1237 Oligoribonuclease, mitoch yes no 0.694 0.729 0.514 8e-48
Q9D8S4237 Oligoribonuclease, mitoch yes no 0.694 0.729 0.514 8e-48
Q9Y3B8237 Oligoribonuclease, mitoch yes no 0.694 0.729 0.514 1e-47
Q9VCI0211 Probable oligoribonucleas yes no 0.698 0.824 0.488 1e-42
P57885184 Oligoribonuclease OS=Past yes no 0.714 0.967 0.513 2e-41
A5UFF2182 Oligoribonuclease OS=Haem yes no 0.714 0.978 0.497 3e-41
A5UBG1182 Oligoribonuclease OS=Haem yes no 0.714 0.978 0.497 4e-41
Q4QJM8182 Oligoribonuclease OS=Haem yes no 0.714 0.978 0.497 4e-41
>sp|Q9ZVE0|ORN_ARATH Oligoribonuclease OS=Arabidopsis thaliana GN=At2g26970 PE=2 SV=2 Back     alignment and function desciption
 Score =  310 bits (795), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 154/245 (62%), Positives = 185/245 (75%), Gaps = 25/245 (10%)

Query: 1   MDGLSNAFSVLELDADDSQVKTPAAASSSSSSSSSCKSVESKSKANSSSNLTLENQQNSQ 60
           M+ LSNAFSVL    +D+    P A+SSS+             K   S N +LE+     
Sbjct: 1   MNKLSNAFSVLAFADEDA----PMASSSSTG------------KQEESVNGSLEDG---- 40

Query: 61  TPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDS 120
                +YK PLVWIDLEMTGL +EVDRILEIACIIT+G LT+SVEGPDLV+ QTK+CLD 
Sbjct: 41  -----DYKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDK 95

Query: 121 MGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLK 180
           M +WCQ HH ASGLTKKVL S +TEREAE++V+EFVKK+VG+  PLLAGNSVYVDF+FLK
Sbjct: 96  MDDWCQTHHGASGLTKKVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLK 155

Query: 181 KYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKE 240
           KYMP+LA+LF H+LVDVSS+KALC RW+P + RK P+K+  HRA+DDIRESI ELKYYK+
Sbjct: 156 KYMPELAALFPHILVDVSSVKALCARWFPIERRKAPAKKNNHRAMDDIRESIKELKYYKK 215

Query: 241 NIFKT 245
            IFK 
Sbjct: 216 TIFKA 220
3'-to-5' exoribonuclease specific for small oligoribonucleotides.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|A2VE52|ORN_BOVIN Oligoribonuclease, mitochondrial OS=Bos taurus GN=REXO2 PE=2 SV=1 Back     alignment and function description
>sp|Q5U1X1|ORN_RAT Oligoribonuclease, mitochondrial OS=Rattus norvegicus GN=Rexo2 PE=2 SV=1 Back     alignment and function description
>sp|Q9D8S4|ORN_MOUSE Oligoribonuclease, mitochondrial OS=Mus musculus GN=Rexo2 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y3B8|ORN_HUMAN Oligoribonuclease, mitochondrial OS=Homo sapiens GN=REXO2 PE=1 SV=3 Back     alignment and function description
>sp|Q9VCI0|ORN_DROME Probable oligoribonuclease OS=Drosophila melanogaster GN=CG10214 PE=1 SV=1 Back     alignment and function description
>sp|P57885|ORN_PASMU Oligoribonuclease OS=Pasteurella multocida (strain Pm70) GN=orn PE=3 SV=1 Back     alignment and function description
>sp|A5UFF2|ORN_HAEIG Oligoribonuclease OS=Haemophilus influenzae (strain PittGG) GN=orn PE=3 SV=1 Back     alignment and function description
>sp|A5UBG1|ORN_HAEIE Oligoribonuclease OS=Haemophilus influenzae (strain PittEE) GN=orn PE=3 SV=1 Back     alignment and function description
>sp|Q4QJM8|ORN_HAEI8 Oligoribonuclease OS=Haemophilus influenzae (strain 86-028NP) GN=orn PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
225435975245 PREDICTED: oligoribonuclease [Vitis vini 0.979 0.995 0.706 3e-98
351722973242 uncharacterized protein LOC100527858 [Gl 0.959 0.987 0.681 5e-91
357493709 1551 Oligoribonuclease [Medicago truncatula] 0.935 0.150 0.661 2e-90
449448848253 PREDICTED: oligoribonuclease-like [Cucum 0.987 0.972 0.675 9e-90
356501364241 PREDICTED: oligoribonuclease-like [Glyci 0.951 0.983 0.679 2e-85
224120530219 predicted protein [Populus trichocarpa] 0.879 1.0 0.670 2e-83
297825941223 exonuclease family protein [Arabidopsis 0.887 0.991 0.624 3e-82
30683321222 oligoribonuclease [Arabidopsis thaliana] 0.883 0.990 0.628 3e-82
79323145218 oligoribonuclease [Arabidopsis thaliana] 0.867 0.990 0.624 2e-81
242064994246 hypothetical protein SORBIDRAFT_04g01742 0.907 0.918 0.577 2e-80
>gi|225435975|ref|XP_002271328.1| PREDICTED: oligoribonuclease [Vitis vinifera] gi|296083947|emb|CBI24335.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  363 bits (933), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 176/249 (70%), Positives = 206/249 (82%), Gaps = 5/249 (2%)

Query: 1   MDGLSNAFSVLELDADDSQVKTPAAASSSSSSSSSCKSVESKSKANSSSNLTLENQQNSQ 60
           M+ LSN FSVL+LDADD Q+  P ++S++       KS  +   + +  N     +Q+S 
Sbjct: 1   MEKLSNIFSVLQLDADDDQLHMPDSSSTTDKKEKKGKSSSNLVPSKNEKNC----EQDSM 56

Query: 61  TPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDS 120
            P E +Y++PLVWIDLEMTGL +EVDRILEIACIITDG L KSVEGPDLVIHQTKECLD+
Sbjct: 57  IPSE-QYRLPLVWIDLEMTGLNVEVDRILEIACIITDGNLIKSVEGPDLVIHQTKECLDN 115

Query: 121 MGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLK 180
           MGEWCQ+HH ASGLTKKVL S ++E+EAEKQV+EFVK+NVGTYTPLLAGNSVY+DF+FLK
Sbjct: 116 MGEWCQSHHSASGLTKKVLRSTISEQEAEKQVIEFVKRNVGTYTPLLAGNSVYMDFLFLK 175

Query: 181 KYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKE 240
           KYMPDLASLFSHVLVDVSSIKALC+RWYPRD +K PSKE KHRA+DDIRESI ELKYY+E
Sbjct: 176 KYMPDLASLFSHVLVDVSSIKALCIRWYPRDSKKAPSKENKHRAMDDIRESIRELKYYRE 235

Query: 241 NIFKTNLKK 249
           NIFK +  K
Sbjct: 236 NIFKASKSK 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|351722973|ref|NP_001238542.1| uncharacterized protein LOC100527858 [Glycine max] gi|255633388|gb|ACU17051.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357493709|ref|XP_003617143.1| Oligoribonuclease [Medicago truncatula] gi|355518478|gb|AET00102.1| Oligoribonuclease [Medicago truncatula] Back     alignment and taxonomy information
>gi|449448848|ref|XP_004142177.1| PREDICTED: oligoribonuclease-like [Cucumis sativus] gi|449503429|ref|XP_004161998.1| PREDICTED: oligoribonuclease-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356501364|ref|XP_003519495.1| PREDICTED: oligoribonuclease-like [Glycine max] Back     alignment and taxonomy information
>gi|224120530|ref|XP_002330965.1| predicted protein [Populus trichocarpa] gi|222872757|gb|EEF09888.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297825941|ref|XP_002880853.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] gi|297326692|gb|EFH57112.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30683321|ref|NP_850090.1| oligoribonuclease [Arabidopsis thaliana] gi|83305201|sp|Q9ZVE0.2|ORN_ARATH RecName: Full=Oligoribonuclease gi|17381150|gb|AAL36387.1| unknown protein [Arabidopsis thaliana] gi|25054981|gb|AAN71962.1| unknown protein [Arabidopsis thaliana] gi|330252818|gb|AEC07912.1| oligoribonuclease [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79323145|ref|NP_001031426.1| oligoribonuclease [Arabidopsis thaliana] gi|222423704|dbj|BAH19818.1| AT2G26970 [Arabidopsis thaliana] gi|330252819|gb|AEC07913.1| oligoribonuclease [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242064994|ref|XP_002453786.1| hypothetical protein SORBIDRAFT_04g017420 [Sorghum bicolor] gi|241933617|gb|EES06762.1| hypothetical protein SORBIDRAFT_04g017420 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
TAIR|locus:2059263222 AT2G26970 [Arabidopsis thalian 0.718 0.806 0.748 3.2e-75
UNIPROTKB|F1NGJ1236 REXO2 "Uncharacterized protein 0.718 0.758 0.513 6.2e-46
UNIPROTKB|A2VE52237 REXO2 "Oligoribonuclease, mito 0.718 0.755 0.513 1.3e-45
MGI|MGI:1888981237 Rexo2 "REX2, RNA exonuclease 2 0.718 0.755 0.513 2.1e-45
RGD|1304874237 Rexo2 "REX2, RNA exonuclease 2 0.718 0.755 0.513 2.1e-45
UNIPROTKB|Q5U1X1237 Rexo2 "Oligoribonuclease, mito 0.718 0.755 0.513 2.1e-45
UNIPROTKB|E2QWT2236 REXO2 "Uncharacterized protein 0.714 0.754 0.513 2.7e-45
UNIPROTKB|Q9Y3B8237 REXO2 "Oligoribonuclease, mito 0.710 0.746 0.508 2.7e-45
ZFIN|ZDB-GENE-040426-1709259 smfn "small fragment nuclease" 0.718 0.691 0.480 3.1e-44
UNIPROTKB|H0YG54197 REXO2 "Oligoribonuclease, mito 0.686 0.868 0.497 1.1e-41
TAIR|locus:2059263 AT2G26970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 733 (263.1 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
 Identities = 134/179 (74%), Positives = 158/179 (88%)

Query:    66 EYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWC 125
             +YK PLVWIDLEMTGL +EVDRILEIACIIT+G LT+SVEGPDLV+ QTK+CLD M +WC
Sbjct:    41 DYKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWC 100

Query:   126 QNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPD 185
             Q HH ASGLTKKVL S +TEREAE++V+EFVKK+VG+  PLLAGNSVYVDF+FLKKYMP+
Sbjct:   101 QTHHGASGLTKKVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKKYMPE 160

Query:   186 LASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFK 244
             LA+LF H+LVDVSS+KALC RW+P + RK P+K+  HRA+DDIRESI ELKYYK+ IFK
Sbjct:   161 LAALFPHILVDVSSVKALCARWFPIERRKAPAKKNNHRAMDDIRESIKELKYYKKTIFK 219
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004527 "exonuclease activity" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA;ISS
UNIPROTKB|F1NGJ1 REXO2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A2VE52 REXO2 "Oligoribonuclease, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1888981 Rexo2 "REX2, RNA exonuclease 2 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1304874 Rexo2 "REX2, RNA exonuclease 2 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5U1X1 Rexo2 "Oligoribonuclease, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWT2 REXO2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y3B8 REXO2 "Oligoribonuclease, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1709 smfn "small fragment nuclease" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|H0YG54 REXO2 "Oligoribonuclease, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5U1X1ORN_RAT3, ., 1, ., -, ., -0.51440.69470.7299yesno
Q9D8S4ORN_MOUSE3, ., 1, ., -, ., -0.51440.69470.7299yesno
P57885ORN_PASMU3, ., 1, ., -, ., -0.51380.71480.9673yesno
Q9Y3B8ORN_HUMAN3, ., 1, ., -, ., -0.51440.69470.7299yesno
Q9ZVE0ORN_ARATH3, ., 1, ., -, ., -0.62850.88350.9909yesno
A2VE52ORN_BOVIN3, ., 1, ., -, ., -0.51440.69470.7299yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
cd06135173 cd06135, Orn, DEDDh 3'-5' exonuclease domain of ol 1e-100
PRK05359181 PRK05359, PRK05359, oligoribonuclease; Provisional 1e-86
COG1949184 COG1949, Orn, Oligoribonuclease (3'->5' exoribonuc 1e-77
pfam00929161 pfam00929, RNase_T, Exonuclease 5e-31
smart00479169 smart00479, EXOIII, exonuclease domain in DNA-poly 9e-27
cd06127159 cd06127, DEDDh, DEDDh 3'-5' exonuclease domain fam 1e-12
COG0847243 COG0847, DnaQ, DNA polymerase III, epsilon subunit 9e-07
PRK06309232 PRK06309, PRK06309, DNA polymerase III subunit eps 0.001
>gnl|CDD|99838 cd06135, Orn, DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins Back     alignment and domain information 
 Score =  289 bits (743), Expect = e-100
 Identities = 106/173 (61%), Positives = 122/173 (70%)

Query: 71  LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHE 130
           LVWIDLEMTGL  E DRILEIACIITDG L    EGP+LVIHQ  E LD M EWC   H 
Sbjct: 1   LVWIDLEMTGLDPEKDRILEIACIITDGDLNIIAEGPELVIHQPDEVLDGMDEWCTEMHT 60

Query: 131 ASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLF 190
            SGLT++V  S +T  +AE +++EF+KK V      LAGNSV+ D  FL KYMP+L    
Sbjct: 61  KSGLTERVRASTVTLAQAEAELLEFIKKYVPKGKSPLAGNSVHQDRRFLDKYMPELEEYL 120

Query: 191 SHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIF 243
            + ++DVSSIK L  RWYP  YRK P K+  HRALDDIRESI ELKYY+ENIF
Sbjct: 121 HYRILDVSSIKELARRWYPEIYRKAPKKKGTHRALDDIRESIAELKYYRENIF 173

Oligoribonuclease (Orn) is a DEDDh-type DnaQ-like 3'-5' exoribonuclease that is responsible for degrading small oligoribonucleotides to mononucleotides. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Orn is essential for Escherichia coli survival. The human homolog, also called Sfn (small fragment nuclease), is able to hydrolyze short single-stranded RNA and DNA oligomers. It plays a role in cellular nucleotide recycling. Length = 173
>gnl|CDD|235429 PRK05359, PRK05359, oligoribonuclease; Provisional Back     alignment and domain information
>gnl|CDD|224860 COG1949, Orn, Oligoribonuclease (3'->5' exoribonuclease) [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|216200 pfam00929, RNase_T, Exonuclease Back     alignment and domain information
>gnl|CDD|214685 smart00479, EXOIII, exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information
>gnl|CDD|176648 cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>gnl|CDD|223916 COG0847, DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|180524 PRK06309, PRK06309, DNA polymerase III subunit epsilon; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 249
KOG3242208 consensus Oligoribonuclease (3'->5' exoribonucleas 100.0
COG1949184 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA 100.0
PRK05359181 oligoribonuclease; Provisional 100.0
cd06135173 Orn DEDDh 3'-5' exonuclease domain of oligoribonuc 100.0
PRK09146239 DNA polymerase III subunit epsilon; Validated 99.98
PRK09145202 DNA polymerase III subunit epsilon; Validated 99.97
PRK05711240 DNA polymerase III subunit epsilon; Provisional 99.97
TIGR01406225 dnaQ_proteo DNA polymerase III, epsilon subunit, P 99.97
PRK07740244 hypothetical protein; Provisional 99.97
PRK06310250 DNA polymerase III subunit epsilon; Validated 99.96
cd06131167 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl 99.96
PRK07942232 DNA polymerase III subunit epsilon; Provisional 99.96
PRK08517257 DNA polymerase III subunit epsilon; Provisional 99.96
TIGR00573217 dnaq exonuclease, DNA polymerase III, epsilon subu 99.96
PRK06063 313 DNA polymerase III subunit epsilon; Provisional 99.96
TIGR01298200 RNaseT ribonuclease T. in gamma-subdivision Proteo 99.96
COG2176 1444 PolC DNA polymerase III, alpha subunit (gram-posit 99.96
PRK05168211 ribonuclease T; Provisional 99.96
PRK06309232 DNA polymerase III subunit epsilon; Validated 99.96
cd06134189 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. 99.96
PRK06807 313 DNA polymerase III subunit epsilon; Validated 99.96
cd06136177 TREX1_2 DEDDh 3'-5' exonuclease domain of three pr 99.96
smart00479169 EXOIII exonuclease domain in DNA-polymerase alpha 99.95
cd06138183 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o 99.95
cd06130156 DNA_pol_III_epsilon_like an uncharacterized bacter 99.95
PRK06195 309 DNA polymerase III subunit epsilon; Validated 99.94
PRK07246 820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.94
PRK05601 377 DNA polymerase III subunit epsilon; Validated 99.94
PRK07883 557 hypothetical protein; Validated 99.94
PRK07748207 sporulation inhibitor KapD; Provisional 99.94
cd06127159 DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh 99.94
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 99.94
PRK08074 928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.94
cd06133176 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o 99.94
TIGR01407 850 dinG_rel DnaQ family exonuclease/DinG family helic 99.93
PRK07247195 DNA polymerase III subunit epsilon; Validated 99.93
cd06137161 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the 99.93
cd06149157 ISG20 DEDDh 3'-5' exonuclease domain of Interferon 99.93
PRK06722281 exonuclease; Provisional 99.93
PRK07983219 exodeoxyribonuclease X; Provisional 99.93
cd06145150 REX1_like DEDDh 3'-5' exonuclease domain of RNA ex 99.92
PRK09182294 DNA polymerase III subunit epsilon; Validated 99.92
PRK11779 476 sbcB exonuclease I; Provisional 99.91
cd06144152 REX4_like DEDDh 3'-5' exonuclease domain of RNA ex 99.91
PTZ00315 582 2'-phosphotransferase; Provisional 99.9
COG0847243 DnaQ DNA polymerase III, epsilon subunit and relat 99.9
PF00929164 RNase_T: Exonuclease; InterPro: IPR013520 This ent 99.89
PRK00448 1437 polC DNA polymerase III PolC; Validated 99.87
COG2925 475 SbcB Exonuclease I [DNA replication, recombination 99.65
KOG2249280 consensus 3'-5' exonuclease [Replication, recombin 99.46
KOG0542280 consensus Predicted exonuclease [Replication, reco 99.43
COG5018210 KapD Inhibitor of the KinA pathway to sporulation, 99.37
cd06143174 PAN2_exo DEDDh 3'-5' exonuclease domain of the euk 99.35
cd05160199 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain 99.3
PHA02570220 dexA exonuclease; Provisional 99.21
cd0612596 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas 99.16
KOG2248380 consensus 3'-5' exonuclease [Replication, recombin 98.97
cd06139193 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease 98.57
cd05780195 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom 98.48
PF13482164 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 98.38
cd05781188 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of 98.38
PRK05755 880 DNA polymerase I; Provisional 98.26
COG3359278 Predicted exonuclease [DNA replication, recombinat 98.04
cd05779204 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai 98.01
cd05777230 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain 97.93
cd05785207 DNA_polB_like2_exo Uncharacterized bacterial subgr 97.92
KOG4793318 consensus Three prime repair exonuclease [Replicat 97.69
PF04857262 CAF1: CAF1 family ribonuclease; InterPro: IPR00694 97.63
cd05783204 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of 97.61
PF03104325 DNA_pol_B_exo1: DNA polymerase family B, exonuclea 97.39
cd05784193 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of 97.28
PTZ00166 1054 DNA polymerase delta catalytic subunit; Provisiona 97.18
cd05778231 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease 97.12
cd05782208 DNA_polB_like1_exo Uncharacterized bacterial subgr 96.8
PF01612176 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 96.78
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 96.63
PRK05762 786 DNA polymerase II; Reviewed 96.6
smart00486 471 POLBc DNA polymerase type-B family. DNA polymerase 96.57
PHA02528 881 43 DNA polymerase; Provisional 96.0
cd06146193 mut-7_like_exo DEDDy 3'-5' exonuclease domain of C 95.81
COG0349 361 Rnd Ribonuclease D [Translation, ribosomal structu 95.03
cd00007155 35EXOc 3'-5' exonuclease. The 35EXOc domain is res 95.02
cd06141170 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and 94.77
cd06129161 RNaseD_like DEDDy 3'-5' exonuclease domain of RNas 93.09
PRK10829 373 ribonuclease D; Provisional 92.7
KOG0304239 consensus mRNA deadenylase subunit [RNA processing 92.31
COG0417 792 PolB DNA polymerase elongation subunit (family B) 91.3
PF10108209 DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate 91.01
KOG3657 1075 consensus Mitochondrial DNA polymerase gamma, cata 90.5
TIGR01388 367 rnd ribonuclease D. This model describes ribonucle 90.38
KOG4793318 consensus Three prime repair exonuclease [Replicat 89.5
cd05776234 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas 88.56
TIGR03491457 RecB family nuclease, putative, TM0106 family. Mem 87.22
KOG1798 2173 consensus DNA polymerase epsilon, catalytic subuni 84.49
TIGR00592 1172 pol2 DNA polymerase (pol2). This family is based o 83.7
cd06148197 Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro 82.94
COG0749 593 PolA DNA polymerase I - 3'-5' exonuclease and poly 82.23
PRK05761 787 DNA polymerase I; Reviewed 82.1
PHA02524 498 43A DNA polymerase subunit A; Provisional 81.7
COG5228299 POP2 mRNA deadenylase subunit [RNA processing and 81.69
PHA03036 1004 DNA polymerase; Provisional 80.22
>KOG3242 consensus Oligoribonuclease (3'->5' exoribonuclease) [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-44  Score=296.71  Aligned_cols=182  Identities=60%  Similarity=0.959  Sum_probs=176.0

Q ss_pred             ccCCcEEEEEEecCCCCCCCCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCCH
Q 025709           66 EYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTE  145 (249)
Q Consensus        66 ~~~~~~V~lDlETTGL~p~~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~~  145 (249)
                      ....++||+|||||||+..+|+|||||||++||.++...+.|+++|+++.++++.|++||+.||+.+|||..++++..++
T Consensus        23 ~l~q~lVWiD~EMTGLdvekd~i~EiacIITD~dL~~~~egpd~vI~~~~evld~MneWc~ehhg~SGLt~kv~~S~~tl  102 (208)
T KOG3242|consen   23 KLKQPLVWIDCEMTGLDVEKDRIIEIACIITDGDLNPVAEGPDLVIHQPKEVLDKMNEWCIEHHGNSGLTEKVLASKITL  102 (208)
T ss_pred             cccCceEEEeeeccccccccceeEEEEEEEecCCccccccCccchhcCCHHHHHHHHHHHHHhccchhHHHHHHHhhccH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHHHHHHHHHCCCcccCCCCCCCCCcHH
Q 025709          146 REAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRAL  225 (249)
Q Consensus       146 ~ea~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl~~la~r~~p~~~~~~l~~~~~HrAl  225 (249)
                      .||..++++|++.++++|.++|+|++++.|+.||.++||.+-..++++.+|++++.+||+||+|....+.|.....|||+
T Consensus       103 ~~aEnevl~yikk~ip~~~~~laGNSV~~DrlFl~k~mPk~~~~lhyrivDVStIkeL~~Rw~P~~~~~aPkK~~~HrAl  182 (208)
T KOG3242|consen  103 ADAENEVLEYIKKHIPKGKCPLAGNSVYMDRLFLKKYMPKLIKHLHYRIVDVSTIKELARRWYPDIKARAPKKKATHRAL  182 (208)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCccCcchhhHHHHHHHHhHHHHHhcceeeeeHHHHHHHHHHhCchhhccCcccccccchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988889999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcCC
Q 025709          226 DDIRESIMELKYYKENIFKTNL  247 (249)
Q Consensus       226 ~Da~aT~~ll~~~~~~~~~~~~  247 (249)
                      +|++.+++.|+|||+++|+++.
T Consensus       183 dDI~ESI~ELq~Yr~nifkk~~  204 (208)
T KOG3242|consen  183 DDIRESIKELQYYRENIFKKST  204 (208)
T ss_pred             HHHHHHHHHHHHHHHHhccCcc
Confidence            9999999999999999999853

>COG1949 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA processing and modification] Back     alignment and domain information
>PRK05359 oligoribonuclease; Provisional Back     alignment and domain information
>cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins Back     alignment and domain information
>PRK09146 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK09145 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK05711 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial Back     alignment and domain information
>PRK07740 hypothetical protein; Provisional Back     alignment and domain information
>PRK06310 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins Back     alignment and domain information
>PRK07942 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK08517 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>TIGR01298 RNaseT ribonuclease T Back     alignment and domain information
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05168 ribonuclease T; Provisional Back     alignment and domain information
>PRK06309 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T Back     alignment and domain information
>PRK06807 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins Back     alignment and domain information
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information
>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins Back     alignment and domain information
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK05601 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK07883 hypothetical protein; Validated Back     alignment and domain information
>PRK07748 sporulation inhibitor KapD; Provisional Back     alignment and domain information
>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK07247 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins Back     alignment and domain information
>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>PRK06722 exonuclease; Provisional Back     alignment and domain information
>PRK07983 exodeoxyribonuclease X; Provisional Back     alignment and domain information
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins Back     alignment and domain information
>PRK09182 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK11779 sbcB exonuclease I; Provisional Back     alignment and domain information
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>PTZ00315 2'-phosphotransferase; Provisional Back     alignment and domain information
>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00929 RNase_T: Exonuclease; InterPro: IPR013520 This entry includes a variety of exonuclease proteins, such as ribonuclease T [] and the epsilon subunit of DNA polymerase III Back     alignment and domain information
>PRK00448 polC DNA polymerase III PolC; Validated Back     alignment and domain information
>COG2925 SbcB Exonuclease I [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2249 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>KOG0542 consensus Predicted exonuclease [Replication, recombination and repair] Back     alignment and domain information
>COG5018 KapD Inhibitor of the KinA pathway to sporulation, predicted exonuclease [General function prediction only] Back     alignment and domain information
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2 Back     alignment and domain information
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>PHA02570 dexA exonuclease; Provisional Back     alignment and domain information
>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily Back     alignment and domain information
>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases Back     alignment and domain information
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A Back     alignment and domain information
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information
>COG3359 Predicted exonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase Back     alignment and domain information
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase Back     alignment and domain information
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>KOG4793 consensus Three prime repair exonuclease [Replication, recombination and repair] Back     alignment and domain information
>PF04857 CAF1: CAF1 family ribonuclease; InterPro: IPR006941 CAF1 is an RNase of the DEDD superfamily, and a subunit of the Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation Back     alignment and domain information
>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included Back     alignment and domain information
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases Back     alignment and domain information
>PTZ00166 DNA polymerase delta catalytic subunit; Provisional Back     alignment and domain information
>cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase Back     alignment and domain information
>cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PRK05762 DNA polymerase II; Reviewed Back     alignment and domain information
>smart00486 POLBc DNA polymerase type-B family Back     alignment and domain information
>PHA02528 43 DNA polymerase; Provisional Back     alignment and domain information
>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00007 35EXOc 3'-5' exonuclease Back     alignment and domain information
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information
>PRK10829 ribonuclease D; Provisional Back     alignment and domain information
>KOG0304 consensus mRNA deadenylase subunit [RNA processing and modification] Back     alignment and domain information
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] Back     alignment and domain information
>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins Back     alignment and domain information
>KOG3657 consensus Mitochondrial DNA polymerase gamma, catalytic subunit [Replication, recombination and repair] Back     alignment and domain information
>TIGR01388 rnd ribonuclease D Back     alignment and domain information
>KOG4793 consensus Three prime repair exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase Back     alignment and domain information
>TIGR03491 RecB family nuclease, putative, TM0106 family Back     alignment and domain information
>KOG1798 consensus DNA polymerase epsilon, catalytic subunit A [Replication, recombination and repair] Back     alignment and domain information
>TIGR00592 pol2 DNA polymerase (pol2) Back     alignment and domain information
>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins Back     alignment and domain information
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05761 DNA polymerase I; Reviewed Back     alignment and domain information
>PHA02524 43A DNA polymerase subunit A; Provisional Back     alignment and domain information
>COG5228 POP2 mRNA deadenylase subunit [RNA processing and modification] Back     alignment and domain information
>PHA03036 DNA polymerase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
1j9a_A184 Oligoribonuclease Length = 184 1e-39
2igi_A180 Crystal Structure Of E. Coli Oligoribonuclease Leng 8e-38
1yta_A180 Crystal Structure Of Oligoribonuclease, The Lone Es 8e-35
3tr8_A186 Structure Of An Oligoribonuclease (Orn) From Coxiel 4e-34
2gbz_A194 The Crystal Structure Of Xc847 From Xanthomonas Cam 2e-33
>pdb|1J9A|A Chain A, Oligoribonuclease Length = 184 Back     alignment and structure 
Iteration: 1

 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 108/177 (61%), Gaps = 1/177 (0%)
Query: 68  KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQN 127
           K  L+WIDLE TGL  E +RI+EIA I+TD  L    EGP L +HQ+ E L+   +WCQ 
Sbjct: 7   KQNLIWIDLEXTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKXNDWCQK 66
Query: 128 HHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLA 187
            H  +GL +++  S LTER AE Q ++F+KK V      + GNS+  D  FL KY PDLA
Sbjct: 67  THSENGLIERIKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYXPDLA 126
Query: 188 SLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFK 244
             F +  +DVS++K L  RW P        KE  H ALDDIRESI EL YY+E+  K
Sbjct: 127 DYFHYRHLDVSTLKELAARWKPEILEGF-KKENTHLALDDIRESIKELAYYREHFXK 182
>pdb|2IGI|A Chain A, Crystal Structure Of E. Coli Oligoribonuclease Length = 180 Back     alignment and structure
>pdb|1YTA|A Chain A, Crystal Structure Of Oligoribonuclease, The Lone Essential Exoribonuclease In Escherichia Coli Length = 180 Back     alignment and structure
>pdb|3TR8|A Chain A, Structure Of An Oligoribonuclease (Orn) From Coxiella Burnetii Length = 186 Back     alignment and structure
>pdb|2GBZ|A Chain A, The Crystal Structure Of Xc847 From Xanthomonas Campestris: A 3-5 Oligoribonuclease Of Dnaq Fold Family With A Novel Opposingly-Shifted Helix Length = 194 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
2gbz_A194 Oligoribonuclease; ORN, deddh, structural genomics 8e-65
2igi_A180 Oligoribonuclease; RNAse, exoribonuclease, exonucl 2e-64
3tr8_A186 Oligoribonuclease; transcription, hydrolase; 2.50A 8e-64
3u3y_B314 Three prime repair exonuclease 1; RNAse H fold, 3' 2e-07
3mxm_B242 Three prime repair exonuclease 1; RNAse H-like fol 8e-07
3v9w_A235 Ribonuclease T; DEDD nucleases family, EXO-nucleas 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 8e-06
2xri_A224 ERI1 exoribonuclease 3; hydrolase, metal binding; 1e-05
2f96_A224 Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas 2e-05
3cg7_A308 CRN-4, cell death-related nuclease 4; hydrolase, a 2e-05
1zbu_A349 ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; 2e-04
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV} Length = 194 Back     alignment and structure
 Score =  199 bits (506), Expect = 8e-65
 Identities = 72/175 (41%), Positives = 103/175 (58%), Gaps = 1/175 (0%)

Query: 70  PLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHH 129
            L+WIDLEMTGL  + D I+EIA I+TD +L    EGP+L I  + E L++M EW +N H
Sbjct: 10  RLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQH 69

Query: 130 EASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASL 189
             SGL ++VL S +T  +AE Q V F+ + +      + GNS+  D  FL + M  L   
Sbjct: 70  RRSGLWQRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRLERY 129

Query: 190 FSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFK 244
           F +  +DVS+IK L  RW P       +K   H AL D+R+SI EL++Y++ +  
Sbjct: 130 FHYRNLDVSTIKELARRWAPAVA-SGFAKSSAHTALSDVRDSIDELRHYRQFMGT 183
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A Length = 180 Back     alignment and structure
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii} Length = 186 Back     alignment and structure
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Length = 314 Back     alignment and structure
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Length = 242 Back     alignment and structure
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A Length = 235 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Length = 299 Back     alignment and structure
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Length = 224 Back     alignment and structure
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 Length = 224 Back     alignment and structure
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Length = 308 Back     alignment and structure
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Length = 349 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query249
3tr8_A186 Oligoribonuclease; transcription, hydrolase; 2.50A 100.0
2igi_A180 Oligoribonuclease; RNAse, exoribonuclease, exonucl 100.0
2gbz_A194 Oligoribonuclease; ORN, deddh, structural genomics 100.0
2gui_A194 DNA polymerase III epsilon subunit; DNA polymerase 99.97
2p1j_A186 POLIII, DNA polymerase III POLC-type; structural g 99.97
1w0h_A204 3'-5' exonuclease ERI1; nuclease domain, hydrolase 99.96
3mxm_B242 Three prime repair exonuclease 1; RNAse H-like fol 99.96
2xri_A224 ERI1 exoribonuclease 3; hydrolase, metal binding; 99.96
3u3y_B314 Three prime repair exonuclease 1; RNAse H fold, 3' 99.96
1y97_A238 Three prime repair exonuclease 2; TREX2, hydrolase 99.96
2f96_A224 Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas 99.96
3v9w_A235 Ribonuclease T; DEDD nucleases family, EXO-nucleas 99.95
1wlj_A189 Interferon stimulated gene 20KDA; exoribonuclease, 99.94
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 99.94
3cg7_A308 CRN-4, cell death-related nuclease 4; hydrolase, a 99.94
2qxf_A 482 Exodeoxyribonuclease I; alpha-beta domain, DNAQ su 99.93
1zbu_A349 ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; 99.93
4hec_A190 Putative uncharacterized protein; ssgcid, structur 99.32
2kfn_A 605 Klenow fragment of DNA polymerase I; complex (poly 98.88
1x9m_A 698 DNA polymerase; DNA ploymerase, N-2-acetylaminoflu 98.52
4gmj_B285 CCR4-NOT transcription complex subunit 7; mRNA dec 98.05
1qht_A 775 Protein (DNA polymerase); archaea, hyperthermostab 98.01
1s5j_A 847 DNA polymerase I; replication, disulfide bonds, tr 97.69
2d5r_A252 CCR4-NOT transcription complex subunit 7; poly(A) 97.6
3iay_A 919 DNA polymerase delta catalytic subunit; protein-DN 97.48
2p51_A333 SPCC18.06C protein; DEDD nuclease fold, hydrolase, 97.46
1noy_A388 Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas 97.35
4dfk_A 540 DNA polymerase I, thermostable; DNA polymerase, tr 97.13
2gv9_A 1193 DNA polymerase; polymerase alpha fold, transferase 96.98
1uoc_A289 POP2; hydrolase, DEDD nuclease, mRNA degradation, 96.84
3k59_A 786 POL II, DNA polymerase II; protein-DNA complex, DN 95.63
3qex_A 903 DNA polymerase, GP43; difluorotoluene nucleoside; 95.22
3pv8_A 592 DNA polymerase I; DNA polymerase I, protein-DNA co 94.65
2py5_A 575 DNA polymerase; protein-DNA complex, replication, 94.59
3saf_A 428 Exosome component 10; exoribonuclease, RNA exosome 93.31
3d45_A 507 Poly(A)-specific ribonuclease PARN; CAP analogue, 91.74
2hbj_A 410 Exosome complex exonuclease RRP6; RNA metabolism, 87.8
2a1r_A430 Poly(A)-specific ribonuclease PARN; DEDD, nuclease 87.31
1vk0_A206 Hypothetical protein; homohexamer, AT5G06450, stru 84.71
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 83.46
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii} Back     alignment and structure
Probab=100.00  E-value=5.5e-46  Score=314.09  Aligned_cols=181  Identities=43%  Similarity=0.670  Sum_probs=163.2

Q ss_pred             cccCCcEEEEEEecCCCCCCCCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCC
Q 025709           65 FEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLT  144 (249)
Q Consensus        65 ~~~~~~~V~lDlETTGL~p~~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~  144 (249)
                      .+...+|||||+|||||+|.+|+|||||||+++++...+.+.++++|+|+...+..|++|+..+|.+||||+++++++|+
T Consensus         5 ~~~~~~~v~~D~ETTGL~p~~d~IiEIgaV~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~   84 (186)
T 3tr8_A            5 DFSDDNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVD   84 (186)
T ss_dssp             CCCTTCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCC
T ss_pred             cCCCCcEEEEEEECCCCCCCCCceEEEEEEEEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCC
Confidence            45578999999999999999999999999999998766667778889877766566789999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHHHHHHHHHCCCcccCCCCCCCCCcH
Q 025709          145 EREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRA  224 (249)
Q Consensus       145 ~~ea~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl~~la~r~~p~~~~~~l~~~~~HrA  224 (249)
                      +.+++.+|++|++++++++.++|||||+.||+.||++++++++.+++++++|++++.+|+|+|+|.... +++..++|||
T Consensus        85 ~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P~~~~-~~~~~~~HrA  163 (186)
T 3tr8_A           85 EVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAPQIAA-AHIKESQHLA  163 (186)
T ss_dssp             HHHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCHHHHT-TSCCCCCSCH
T ss_pred             HHHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCccccc-cCCCCCCcCh
Confidence            999999999999877766667899999999999999999999988999999999987799999998754 6788999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCcC
Q 025709          225 LDDIRESIMELKYYKENIFKTN  246 (249)
Q Consensus       225 l~Da~aT~~ll~~~~~~~~~~~  246 (249)
                      ++||++|+++|+|||+++|+..
T Consensus       164 l~Da~ati~~l~~y~~~~~~~~  185 (186)
T 3tr8_A          164 LQDIRDSIEELRYYRAHLLNLS  185 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHTBCC-
T ss_pred             HHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999864
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A Back     alignment and structure
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* Back     alignment and structure
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Back     alignment and structure
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Back     alignment and structure
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Back     alignment and structure
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Back     alignment and structure
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 Back     alignment and structure
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A Back     alignment and structure
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Back     alignment and structure
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* Back     alignment and structure
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis} Back     alignment and structure
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* Back     alignment and structure
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* Back     alignment and structure
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} Back     alignment and structure
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Back     alignment and structure
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Back     alignment and structure
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9 Back     alignment and structure
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A Back     alignment and structure
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* Back     alignment and structure
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ... Back     alignment and structure
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Back     alignment and structure
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9 Back     alignment and structure
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Back     alignment and structure
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ... Back     alignment and structure
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ... Back     alignment and structure
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A* Back     alignment and structure
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Back     alignment and structure
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus} Back     alignment and structure
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Back     alignment and structure
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A Back     alignment and structure
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Back     alignment and structure
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 249
d2igia1180 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia 2e-48
d3b6oa1226 c.55.3.5 (A:9-234) Three prime repair exonuclease 2e-12
d1y97a1228 c.55.3.5 (A:1-228) Three prime repair exonuclease 8e-12
d2f96a1202 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas ae 3e-09
d2guia1174 c.55.3.5 (A:7-180) N-terminal exonuclease domain o 9e-09
d2qxfa1 467 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli 1e-07
d1w0ha_200 c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapien 5e-07
d1wlja_173 c.55.3.5 (A:) Interferon-stimulated gene 20 kDa pr 1e-05
>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]} Length = 180 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Oligoribonuclease
species: Escherichia coli [TaxId: 562]

 Score =  156 bits (394), Expect = 2e-48
 Identities = 79/177 (44%), Positives = 109/177 (61%), Gaps = 1/177 (0%)

Query: 68  KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQN 127
           +  L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+ E L  M +W   
Sbjct: 4   ENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVR 63

Query: 128 HHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLA 187
            H ASGL ++V  S + +REAE   +EF+K+ V      + GNS+  D  FL KYMP+L 
Sbjct: 64  THTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELE 123

Query: 188 SLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFK 244
           + F +  +DVS++K L  RW P        K+  H+A+DDIRES+ EL YY+E+  K
Sbjct: 124 AYFHYRYLDVSTLKELARRWKPEILDGFT-KQGTHQAMDDIRESVAELAYYREHFIK 179
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 226 Back     information, alignment and structure
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 Back     information, alignment and structure
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]} Length = 202 Back     information, alignment and structure
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} Length = 174 Back     information, alignment and structure
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} Length = 467 Back     information, alignment and structure
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 200 Back     information, alignment and structure
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Length = 173 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query249
d2igia1180 Oligoribonuclease {Escherichia coli [TaxId: 562]} 99.97
d2guia1174 N-terminal exonuclease domain of the epsilon subun 99.95
d1wlja_173 Interferon-stimulated gene 20 kDa protein, ISG20 { 99.94
d3b6oa1226 Three prime repair exonuclease 1, TREX1 {Mouse (Mu 99.93
d1y97a1228 Three prime repair exonuclease 2, TREX2 {Human (Ho 99.91
d1w0ha_200 Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960 99.88
d2qxfa1 467 Exonuclease I {Escherichia coli K12 (Escherichia c 99.88
d2f96a1202 Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287 99.82
d1x9ma1204 Exonuclease domain of T7 DNA polymerase {Bacteriop 98.62
d1kfsa1195 Exonuclease domain of prokaryotic DNA polymerase { 98.45
d2d5ra1252 CCR4-NOT transcription complex subunit 7, CAF1 {Hu 98.26
d1tgoa1347 Exonuclease domain of family B DNA polymerases {Ar 97.59
d2hhva1171 Exonuclease domain of prokaryotic DNA polymerase { 97.37
d1yt3a3193 Ribonuclease D, catalytic domain {Escherichia coli 97.27
d1uoca_286 Pop2 RNase D domain {Baker's yeast (Saccharomyces 96.94
d1s5ja1410 Exonuclease domain of family B DNA polymerases {Su 96.65
d1q8ia1388 Exonuclease domain of family B DNA polymerases {Es 96.32
d2hbka2292 Exosome complex exonuclease RRP6 {Baker's yeast (S 95.17
d1vk0a_206 Hypothetical protein AT5G06450 {Thale-cress (Arabi 94.25
d1ih7a1375 Exonuclease domain of family B DNA polymerases {Ba 94.0
d1noya_372 Exonuclease domain of family B DNA polymerases {Ba 93.52
>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Oligoribonuclease
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.8e-31  Score=215.27  Aligned_cols=178  Identities=44%  Similarity=0.699  Sum_probs=141.6

Q ss_pred             ccCCcEEEEEEecCCCCCCCCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCCH
Q 025709           66 EYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTE  145 (249)
Q Consensus        66 ~~~~~~V~lDlETTGL~p~~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~~  145 (249)
                      ..++++||+|+|||||+|..|+|||||||+++.+.....+.....+.++..............+...+.........+..
T Consensus         2 ~~~~~lv~lD~ETTGLdp~~d~IIeIaaV~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (180)
T d2igia1           2 ANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGD   81 (180)
T ss_dssp             CGGGCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCH
T ss_pred             CCCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCceEeeccceeeeeccccccccccccccccccccchhhhhccccccH
Confidence            45789999999999999999999999999998887655555555656554332222222222334557777778888999


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHHHHHHHHHCCCcccCCCCCCCCCcHH
Q 025709          146 REAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRAL  225 (249)
Q Consensus       146 ~ea~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl~~la~r~~p~~~~~~l~~~~~HrAl  225 (249)
                      ..+...+..|.......+..++++||+.||+.||.+.+.+.+..++++.+|+.++....+++.|... ++++..++||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~FD~~~l~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~~~aH~Al  160 (180)
T d2igia1          82 REAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEIL-DGFTKQGTHQAM  160 (180)
T ss_dssp             HHHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCGGGG-GGSCCCCCCCHH
T ss_pred             HHHHHHHHHHHhhhccCCCcEEEechhcchhHHHHHHhhhhcccCCCcEEeehhhHHHHhhcChHHh-cCCCCCCCcccH
Confidence            9999999999987554555678999999999999999988877888999999888777777776543 457788999999


Q ss_pred             HHHHHHHHHHHHHHHHhcC
Q 025709          226 DDIRESIMELKYYKENIFK  244 (249)
Q Consensus       226 ~Da~aT~~ll~~~~~~~~~  244 (249)
                      +||++|+++|++||++|||
T Consensus       161 ~Dv~~ti~~l~~yr~~~~~  179 (180)
T d2igia1         161 DDIRESVAELAYYREHFIK  179 (180)
T ss_dssp             HHHHHHHHHHHHHHHHTBC
T ss_pred             HHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999997
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} Back     information, alignment and structure
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Back     information, alignment and structure
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Back     information, alignment and structure
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uoca_ c.55.3.9 (A:) Pop2 RNase D domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} Back     information, alignment and structure
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure