Citrus Sinensis ID: 025710
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 249 | ||||||
| 297742494 | 361 | unnamed protein product [Vitis vinifera] | 1.0 | 0.689 | 0.939 | 1e-136 | |
| 359473999 | 371 | PREDICTED: transmembrane protein 120 hom | 0.971 | 0.652 | 0.946 | 1e-133 | |
| 359806628 | 354 | uncharacterized protein LOC100789483 [Gl | 0.987 | 0.694 | 0.922 | 1e-133 | |
| 356576897 | 354 | PREDICTED: transmembrane protein 120 hom | 0.987 | 0.694 | 0.918 | 1e-133 | |
| 255646863 | 354 | unknown [Glycine max] | 0.987 | 0.694 | 0.918 | 1e-133 | |
| 449456299 | 365 | PREDICTED: transmembrane protein 120 hom | 1.0 | 0.682 | 0.939 | 1e-129 | |
| 224117700 | 363 | predicted protein [Populus trichocarpa] | 0.995 | 0.683 | 0.895 | 1e-127 | |
| 255555863 | 360 | conserved hypothetical protein [Ricinus | 1.0 | 0.691 | 0.927 | 1e-126 | |
| 224056717 | 345 | predicted protein [Populus trichocarpa] | 0.991 | 0.715 | 0.883 | 1e-126 | |
| 357445101 | 361 | Transmembrane protein 120 [Medicago trun | 0.987 | 0.681 | 0.906 | 1e-124 |
| >gi|297742494|emb|CBI34643.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/249 (93%), Positives = 239/249 (95%)
Query: 1 MFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQL 60
MF+GPINV A+RKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLP FPVQL
Sbjct: 112 MFLGPINVHATRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPTFPVQL 171
Query: 61 YQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQR 120
YQAWLLFLYTGLALRENILR+NGSDIRPWWIYHHYCAM+MALVSLTWEIKGQPNCAQKQR
Sbjct: 172 YQAWLLFLYTGLALRENILRVNGSDIRPWWIYHHYCAMIMALVSLTWEIKGQPNCAQKQR 231
Query: 121 GVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPIL 180
GVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPIL
Sbjct: 232 GVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPIL 291
Query: 181 FILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKM 240
FILQGFEAYVGLLLLKTA VGVV EWQV FCG LLVLMAVGNF NTVQTLM KSRFKAKM
Sbjct: 292 FILQGFEAYVGLLLLKTAFVGVVSEWQVVFCGVLLVLMAVGNFANTVQTLMVKSRFKAKM 351
Query: 241 KKSKSKPEF 249
K+SKSK E
Sbjct: 352 KRSKSKQEL 360
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473999|ref|XP_002276903.2| PREDICTED: transmembrane protein 120 homolog isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359806628|ref|NP_001241531.1| uncharacterized protein LOC100789483 [Glycine max] gi|255639685|gb|ACU20136.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|356576897|ref|XP_003556566.1| PREDICTED: transmembrane protein 120 homolog [Glycine max] | Back alignment and taxonomy information |
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| >gi|255646863|gb|ACU23902.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|449456299|ref|XP_004145887.1| PREDICTED: transmembrane protein 120 homolog [Cucumis sativus] gi|449524416|ref|XP_004169219.1| PREDICTED: transmembrane protein 120 homolog [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224117700|ref|XP_002317646.1| predicted protein [Populus trichocarpa] gi|222860711|gb|EEE98258.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255555863|ref|XP_002518967.1| conserved hypothetical protein [Ricinus communis] gi|223541954|gb|EEF43500.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224056717|ref|XP_002298988.1| predicted protein [Populus trichocarpa] gi|222846246|gb|EEE83793.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357445101|ref|XP_003592828.1| Transmembrane protein 120 [Medicago truncatula] gi|355481876|gb|AES63079.1| Transmembrane protein 120 [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 249 | ||||||
| TAIR|locus:2127701 | 347 | AT4G10430 "AT4G10430" [Arabido | 0.927 | 0.665 | 0.822 | 1.6e-102 | |
| TAIR|locus:2196668 | 347 | AT1G33230 "AT1G33230" [Arabido | 0.927 | 0.665 | 0.805 | 1.7e-100 | |
| DICTYBASE|DDB_G0288699 | 368 | tmem120 "TMPIT-like family pro | 0.859 | 0.581 | 0.324 | 3.5e-27 | |
| ZFIN|ZDB-GENE-050522-49 | 337 | tmem120b "transmembrane protei | 0.670 | 0.495 | 0.306 | 2.6e-20 | |
| UNIPROTKB|A6QPF8 | 339 | TMEM120B "Transmembrane protei | 0.678 | 0.498 | 0.314 | 7e-20 | |
| RGD|1311474 | 343 | Tmem120a "transmembrane protei | 0.871 | 0.632 | 0.306 | 7.2e-20 | |
| UNIPROTKB|Q05B45 | 343 | TMEM120A "Transmembrane protei | 0.871 | 0.632 | 0.306 | 9.2e-20 | |
| UNIPROTKB|Q9BXJ8 | 343 | TMEM120A "Transmembrane protei | 0.871 | 0.632 | 0.306 | 9.2e-20 | |
| MGI|MGI:2686991 | 343 | Tmem120a "transmembrane protei | 0.871 | 0.632 | 0.306 | 9.2e-20 | |
| UNIPROTKB|J9NV54 | 339 | TMEM120B "Uncharacterized prot | 0.670 | 0.492 | 0.312 | 1.3e-19 |
| TAIR|locus:2127701 AT4G10430 "AT4G10430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
Identities = 190/231 (82%), Positives = 200/231 (86%)
Query: 1 MFIGPINVRASRKDVQLKVKEEYNSYRDRTAXXXXXXXXXXXXXRSWIWDGCLPAFPVQL 60
MF GP+NVRA RKDVQLKVKEEYN YRD+TA RS+ W GCLPAFPVQL
Sbjct: 98 MFCGPVNVRALRKDVQLKVKEEYNRYRDKTALLFLFFPATLLILRSYYWGGCLPAFPVQL 157
Query: 61 YQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQR 120
Y+AWLLFLY GLA+RENILR NGSDIRPWW+YHHYCAM MALVSLTWEIKGQPNC QKQR
Sbjct: 158 YEAWLLFLYAGLAMRENILRANGSDIRPWWLYHHYCAMAMALVSLTWEIKGQPNCVQKQR 217
Query: 121 GVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPIL 180
GV LFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPIL
Sbjct: 218 GVHLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPIL 277
Query: 181 FILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLM 231
FILQ FEAYVGLLLL+ + GVV EWQV CG LLV+MAVGNFINTV+TLM
Sbjct: 278 FILQVFEAYVGLLLLRKTVTGVVNEWQVMVCGILLVVMAVGNFINTVETLM 328
|
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| TAIR|locus:2196668 AT1G33230 "AT1G33230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0288699 tmem120 "TMPIT-like family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-050522-49 tmem120b "transmembrane protein 120B" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A6QPF8 TMEM120B "Transmembrane protein 120B" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| RGD|1311474 Tmem120a "transmembrane protein 120A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q05B45 TMEM120A "Transmembrane protein 120A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9BXJ8 TMEM120A "Transmembrane protein 120A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:2686991 Tmem120a "transmembrane protein 120A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9NV54 TMEM120B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 249 | |||
| pfam07851 | 330 | pfam07851, TMPIT, TMPIT-like protein | 5e-91 |
| >gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein | Back alignment and domain information |
|---|
Score = 271 bits (694), Expect = 5e-91
Identities = 79/242 (32%), Positives = 119/242 (49%), Gaps = 13/242 (5%)
Query: 1 MFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQL 60
+ +G +NV K + K+EY ++ ++ LL T L L ++ L
Sbjct: 101 LVLGNVNVTLLSKQAKFAYKDEYEKFKLYLTVILLLLAFTCLFLLNY-------RVLDAL 153
Query: 61 YQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQR 120
+ L++ Y L +RE+IL +NGS I+ WW++HHY + ++ V LTW P+ Q
Sbjct: 154 FNFLLVWYYCTLTIRESILIVNGSRIKGWWVFHHYISTALSGVMLTW-----PDGEMYQL 208
Query: 121 GVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVW-GETAGVDGQLWLLCPI 179
FL ++M Q + LQN YQ LY ALG+ MD+ G + + L L P
Sbjct: 209 FRNQFLYFSMYQSLVQFLQNYYQSGCLYRLRALGERHNMDLTVEGFQSWMWRGLTFLLPF 268
Query: 180 LFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAK 239
LF Q F+ Y L + A EWQV CG L +++ +GNF T+ + K R +AK
Sbjct: 269 LFFGQFFQLYNAWTLFRLARHPECKEWQVFVCGLLFLVLFLGNFFTTLMVVYQKFRNQAK 328
Query: 240 MK 241
MK
Sbjct: 329 MK 330
|
A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. Length = 330 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 249 | |||
| PF07851 | 330 | TMPIT: TMPIT-like protein; InterPro: IPR012926 A n | 100.0 | |
| KOG4758 | 220 | consensus Predicted membrane protein [General func | 100.0 | |
| KOG4758 | 220 | consensus Predicted membrane protein [General func | 98.48 |
| >PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-110 Score=772.34 Aligned_cols=228 Identities=36% Similarity=0.620 Sum_probs=220.1
Q ss_pred CCcccceeeecchhhhhhhHHhhhhhhhhHHHHHHHHHHHHH-HHHhhhhcCCCCChhhHHHHHHHHHHhHHHHHhhhhh
Q 025710 1 MFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLL-ILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENIL 79 (249)
Q Consensus 1 ~iLG~vNvt~l~k~~kf~yKdEYEkFKl~~tii~l~~~~~~l-~~~~~v~d~~f~~l~~q~~~~~LvwyYcTLtiREsIL 79 (249)
++||||||++++|++||+|||||||||+++|+|++++|++|+ ++++|+.|+ +|+|||||||||||||||||
T Consensus 101 liLGnVNVsll~k~~kf~yKdEYEkFKl~~tii~l~~~~~~~~~~~~r~~d~--------~~~f~lvwyY~tLtiRE~IL 172 (330)
T PF07851_consen 101 LILGNVNVSLLSKQAKFKYKDEYEKFKLYLTIILLLFAVALLFLLNYRVLDQ--------LFNFLLVWYYCTLTIRESIL 172 (330)
T ss_pred eecccccceecccccccchhhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHH--------HHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999999999999999766 556787775 77899999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHhhhheeecccCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhHhcCcccc
Q 025710 80 RINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRM 159 (249)
Q Consensus 80 ~vNGSrIkgWWv~HHY~S~~lsgv~LtWp~~~~p~~~~~~~~~~qFl~fs~~qs~Vq~lQ~~YQrg~LYrl~ALGe~~~M 159 (249)
+||||||||||+.|||+||++|||+|||| ||..+|+||+|||.||+|||+||++|||||||||||||||||||+|
T Consensus 173 ~~NGS~Ik~WW~~HHy~s~~~s~v~Ltwp-----~~~~~~~fr~~fl~f~~~~~~vq~lQ~~YQ~~~Ly~l~AlG~~~~m 247 (330)
T PF07851_consen 173 IVNGSRIKGWWVFHHYISTFLSGVMLTWP-----DGEAYQKFRPQFLLFSLYQSVVQFLQYRYQRGCLYRLRALGKRHNM 247 (330)
T ss_pred ccCCCcchHHHHHHHHHHHHHHhccccCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCccc
Confidence 99999999999999999999999999995 7889999999999999999999999999999999999999999999
Q ss_pred cee-ecCccccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCCcchHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 025710 160 DVV-WGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKA 238 (249)
Q Consensus 160 Dvt-~g~~~~~~g~LtfLlPfLf~g~~fQlYna~~L~~~s~~~~~~eWQV~~~~llf~il~~GNf~TT~~vv~~K~~~~~ 238 (249)
||| +|++|||++||+||+||||+||+||+||||+||+++.+++|+||||+|||++|++||+|||+||++|+++|+|+++
T Consensus 248 dvt~eG~~s~~~~~L~fLlPfLf~~~~~q~yn~~~l~~~~~~~~~~ewqv~~~~~~f~~l~~gN~~tt~~v~~~K~~~~~ 327 (330)
T PF07851_consen 248 DVTVEGFQSWMWRGLTFLLPFLFFGQFFQLYNAYTLFELSYHPECREWQVFVCGLLFLILFLGNFFTTLKVVHQKLKKKA 327 (330)
T ss_pred eeeecccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Confidence 999 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh
Q 025710 239 KMK 241 (249)
Q Consensus 239 ~~~ 241 (249)
|||
T Consensus 328 ~~~ 330 (330)
T PF07851_consen 328 KMK 330 (330)
T ss_pred ccC
Confidence 986
|
; GO: 0016021 integral to membrane |
| >KOG4758 consensus Predicted membrane protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4758 consensus Predicted membrane protein [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 249 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-05
Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 67/229 (29%)
Query: 11 SRKDVQLKVKEEYNSYRDRTALLFLL--FPSTLLILR----SWIWDGCLPAFPVQ----- 59
SR D +K +S + L + + LL+L + W+ AF +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN----AFNLSCKILL 270
Query: 60 ---------------LYQAWLLFLYTGLALRE------NILRINGSDIRPWWIYHH--YC 96
L L E L D+ + +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 97 AMLMALVS---LTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIAL 153
+++ + TW+ NC + ++ L + + ++++ R+++
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN----------VLEPAEYRKMFDRLSV 380
Query: 154 G------KAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLK 196
+ ++W + D + ++ Y L+ K
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMV--------VVNKLHKY--SLVEK 419
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00